Query 024381
Match_columns 268
No_of_seqs 236 out of 1651
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02692 tRNA_CCA_actino tRNA 100.0 2.5E-58 5.3E-63 441.3 20.7 242 1-250 41-296 (466)
2 PRK10885 cca multifunctional t 100.0 8.5E-56 1.9E-60 416.4 21.5 245 1-259 14-279 (409)
3 PRK13298 tRNA CCA-pyrophosphor 100.0 1.9E-54 4.1E-59 404.2 21.2 235 1-249 14-262 (417)
4 PRK11623 pcnB poly(A) polymera 100.0 2.8E-53 6E-58 399.9 21.2 204 1-210 80-292 (472)
5 TIGR01942 pcnB poly(A) polymer 100.0 4.1E-52 8.8E-57 387.4 21.7 201 1-210 43-247 (410)
6 PRK13299 tRNA CCA-pyrophosphor 100.0 9.4E-52 2E-56 387.3 20.0 229 1-247 34-262 (394)
7 COG0617 PcnB tRNA nucleotidylt 100.0 9.4E-50 2E-54 377.1 18.2 236 1-249 36-283 (412)
8 PRK13297 tRNA CCA-pyrophosphor 100.0 2E-47 4.3E-52 350.4 20.2 219 1-243 25-248 (364)
9 PRK13296 tRNA CCA-pyrophosphor 100.0 1.1E-43 2.4E-48 323.3 19.6 191 1-208 14-212 (360)
10 KOG2159 tRNA nucleotidyltransf 100.0 2.5E-40 5.5E-45 304.1 14.1 199 1-209 42-260 (416)
11 PRK00275 glnD PII uridylyl-tra 100.0 3E-29 6.5E-34 256.1 10.3 156 102-259 339-523 (895)
12 PRK03381 PII uridylyl-transfer 100.0 2.2E-28 4.8E-33 246.7 12.4 148 110-259 311-468 (774)
13 PRK00227 glnD PII uridylyl-tra 100.0 2.7E-28 5.9E-33 241.4 12.3 149 107-259 270-428 (693)
14 PF01743 PolyA_pol: Poly A pol 100.0 2.5E-28 5.3E-33 195.3 8.7 111 1-118 12-126 (126)
15 TIGR01693 UTase_glnD [Protein- 99.9 8.1E-28 1.8E-32 245.4 10.8 153 105-259 312-491 (850)
16 PRK03059 PII uridylyl-transfer 99.9 8.3E-28 1.8E-32 244.6 10.7 153 105-259 322-503 (856)
17 PRK05092 PII uridylyl-transfer 99.9 5.8E-27 1.3E-31 240.9 9.3 149 107-259 379-556 (931)
18 cd05398 NT_ClassII-CCAase Nucl 99.9 2.1E-26 4.6E-31 187.0 10.2 105 1-114 30-139 (139)
19 PRK01759 glnD PII uridylyl-tra 99.9 2.2E-26 4.8E-31 234.3 11.2 151 105-259 319-499 (854)
20 COG2844 GlnD UTP:GlnB (protein 99.9 1.1E-25 2.5E-30 220.3 10.8 155 103-259 327-509 (867)
21 PRK05007 PII uridylyl-transfer 99.9 3.7E-25 8E-30 226.1 10.2 148 110-259 348-524 (884)
22 PRK04374 PII uridylyl-transfer 99.9 2.6E-24 5.7E-29 218.9 12.3 151 107-259 334-512 (869)
23 PF12627 PolyA_pol_RNAbd: Prob 99.4 3E-13 6.5E-18 95.1 5.8 62 145-206 1-62 (64)
24 PHA01806 hypothetical protein 99.4 1.4E-12 3E-17 109.2 7.1 80 1-108 49-156 (200)
25 PF01966 HD: HD domain; Inter 96.2 0.0011 2.4E-08 50.7 -0.4 21 232-252 24-44 (122)
26 PRK12704 phosphodiesterase; Pr 95.9 0.021 4.6E-07 56.0 7.2 27 232-258 357-387 (520)
27 TIGR00277 HDIG uncharacterized 95.7 0.0043 9.3E-08 44.1 0.9 27 232-258 26-58 (80)
28 cd00077 HDc Metal dependent ph 95.3 0.003 6.6E-08 48.6 -1.1 18 232-249 27-44 (145)
29 PRK00106 hypothetical protein; 95.0 0.12 2.6E-06 50.8 8.7 98 145-258 291-402 (535)
30 TIGR03319 YmdA_YtgF conserved 94.9 0.072 1.6E-06 52.3 7.0 27 232-258 351-381 (514)
31 smart00471 HDc Metal dependent 94.8 0.012 2.6E-07 44.3 0.9 19 232-250 27-45 (124)
32 PRK13480 3'-5' exoribonuclease 94.7 0.077 1.7E-06 48.8 6.2 17 232-248 182-198 (314)
33 TIGR00295 conserved hypothetic 94.6 0.022 4.8E-07 47.4 2.3 27 232-258 40-68 (164)
34 COG1418 Predicted HD superfami 94.3 0.016 3.5E-07 50.7 0.8 35 224-258 49-88 (222)
35 PRK12705 hypothetical protein; 94.1 0.051 1.1E-06 53.1 3.8 27 232-258 345-375 (508)
36 TIGR01596 cas3_HD CRISPR-assoc 91.7 0.099 2.1E-06 43.1 1.7 17 232-248 30-46 (177)
37 PRK12703 tRNA 2'-O-methylase; 91.5 0.38 8.2E-06 44.7 5.5 27 232-258 209-237 (339)
38 PRK07152 nadD putative nicotin 91.5 0.36 7.7E-06 44.9 5.4 17 232-248 218-234 (342)
39 TIGR00488 putative HD superfam 90.9 0.1 2.2E-06 43.0 1.0 17 232-248 30-46 (158)
40 TIGR03401 cyanamide_fam HD dom 88.8 0.22 4.7E-06 43.8 1.5 17 232-248 81-97 (228)
41 KOG1573 Aldehyde reductase [Ge 88.6 0.25 5.5E-06 40.9 1.6 40 222-261 104-147 (204)
42 COG1480 Predicted membrane-ass 88.4 0.53 1.1E-05 47.2 4.0 39 211-249 489-528 (700)
43 COG2206 c-di-GMP phosphodieste 88.3 0.24 5.2E-06 46.1 1.5 18 233-250 174-191 (344)
44 TIGR03760 ICE_TraI_Pfluor inte 86.9 0.3 6.4E-06 42.7 1.2 15 234-248 106-120 (218)
45 COG1078 HD superfamily phospho 86.9 0.99 2.1E-05 43.3 4.8 59 184-249 28-99 (421)
46 COG3481 Predicted HD-superfami 83.4 3.7 8E-05 37.3 6.5 34 232-265 164-203 (287)
47 TIGR03276 Phn-HD phosphonate d 81.9 1.4 3E-05 37.3 3.0 32 217-248 25-58 (179)
48 PF05153 DUF706: Family of unk 80.9 1.8 4E-05 38.2 3.5 38 224-261 72-114 (253)
49 PF07514 TraI_2: Putative heli 80.6 0.86 1.9E-05 42.2 1.5 15 234-248 105-119 (327)
50 PRK10119 putative hydrolase; P 77.6 1.5 3.2E-05 38.7 1.9 16 232-247 47-62 (231)
51 COG3437 Response regulator con 76.2 1.1 2.3E-05 41.8 0.7 21 233-253 211-231 (360)
52 COG4341 Predicted HD phosphohy 71.7 3.1 6.6E-05 34.7 2.2 37 225-261 40-79 (186)
53 KOG2681 Metal-dependent phosph 70.7 2.3 5.1E-05 40.6 1.5 26 235-261 109-134 (498)
54 PF08668 HDOD: HDOD domain; I 67.2 2 4.3E-05 36.1 0.3 16 232-247 117-132 (196)
55 COG2254 Predicted HD superfami 64.6 1.8 3.9E-05 38.0 -0.5 24 233-256 51-74 (230)
56 TIGR02621 cas3_GSU0051 CRISPR- 62.2 4.4 9.5E-05 42.2 1.7 15 236-250 703-717 (844)
57 PRK11031 guanosine pentaphosph 62.1 6.6 0.00014 38.4 2.9 19 232-250 351-369 (496)
58 COG1713 Predicted HD superfami 61.5 3.2 6.8E-05 35.3 0.4 20 232-251 39-58 (187)
59 TIGR02562 cas3_yersinia CRISPR 58.1 5.1 0.00011 42.6 1.4 16 234-249 114-129 (1110)
60 cd07749 NT_Pol-beta-like_1 Nuc 56.7 33 0.00071 28.4 5.6 44 4-49 35-89 (156)
61 PRK01286 deoxyguanosinetriphos 47.8 23 0.00051 32.9 3.8 23 232-255 84-106 (336)
62 PRK10854 exopolyphosphatase; P 45.8 12 0.00025 36.9 1.6 19 233-251 360-378 (513)
63 TIGR01353 dGTP_triPase deoxygu 45.3 15 0.00032 34.8 2.1 18 232-249 71-88 (381)
64 TIGR03836 termin_org_HMW1 cyta 38.3 23 0.0005 25.3 1.7 17 93-109 47-63 (82)
65 COG3294 HD supefamily hydrolas 37.8 19 0.0004 31.8 1.4 22 232-253 96-117 (269)
66 KOG3689 Cyclic nucleotide phos 37.5 38 0.00082 34.7 3.7 62 185-247 391-475 (707)
67 PRK11639 zinc uptake transcrip 37.0 1.6E+02 0.0035 24.3 7.0 62 139-200 15-79 (169)
68 cd05402 NT_PAP_TUTase Nucleoti 35.8 1.5E+02 0.0032 22.2 6.2 48 3-50 33-98 (114)
69 PF00770 Peptidase_C5: Adenovi 34.0 34 0.00073 28.8 2.3 16 92-107 38-55 (183)
70 PF09821 AAA_assoc_C: C-termin 33.7 1.1E+02 0.0024 24.0 5.1 91 108-201 25-116 (120)
71 PF05598 DUF772: Transposase d 33.6 1.5E+02 0.0033 20.5 5.6 33 128-160 4-36 (77)
72 PF00233 PDEase_I: 3'5'-cyclic 33.6 27 0.00058 30.6 1.8 15 234-248 33-47 (237)
73 PLN02291 phospho-2-dehydro-3-d 29.5 1.1E+02 0.0023 29.9 5.1 16 128-143 163-178 (474)
74 TIGR01358 DAHP_synth_II 3-deox 29.2 1E+02 0.0022 29.8 5.0 16 128-143 144-159 (443)
75 PRK01096 deoxyguanosinetriphos 29.2 36 0.00078 32.9 2.0 21 234-255 100-120 (440)
76 COG0735 Fur Fe2+/Zn2+ uptake r 28.3 1.6E+02 0.0035 23.7 5.5 64 138-201 9-75 (145)
77 PRK05318 deoxyguanosinetriphos 26.1 47 0.001 32.1 2.2 18 232-249 91-108 (432)
78 PRK04926 dgt deoxyguanosinetri 25.3 46 0.001 32.8 2.0 17 233-249 107-123 (503)
79 PF14091 DUF4269: Domain of un 25.2 1.2E+02 0.0025 25.1 4.0 22 3-24 29-51 (152)
80 smart00135 LY Low-density lipo 22.9 59 0.0013 19.2 1.5 16 88-103 9-24 (43)
81 PF10346 Con-6: Conidiation pr 22.7 1.5E+02 0.0032 18.3 3.2 30 129-159 1-30 (36)
82 PRK03007 deoxyguanosinetriphos 20.6 1.2E+02 0.0025 29.4 3.7 18 232-249 92-109 (428)
83 COG5200 LUC7 U1 snRNP componen 20.2 2.7E+02 0.0059 24.3 5.4 31 238-268 223-253 (258)
No 1
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=100.00 E-value=2.5e-58 Score=441.34 Aligned_cols=242 Identities=22% Similarity=0.302 Sum_probs=211.5
Q ss_pred CCCCCCCceEEEeCCCHHHHHHHhcc----CcccccccceEEEEeCCEEEEEecccccccccccCccccccCCCCCChhh
Q 024381 1 MLNRIPKDFDIITSAELKEVVRVFSQ----CEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKD 76 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~~~~~~~f~~----~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~~~~~~~~eD 76 (268)
|||++|+|+||+|+++|+++++.|.+ ...+|+.|||+.+..++..+||+++|++.++..+..+ .....+++++|
T Consensus 41 llg~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~v~~~~~~~ei~~~r~e~~~~~~~~~--~v~~~~~i~~D 118 (466)
T TIGR02692 41 LLGRLGHDLDFTTDARPEETLAILRPWADAVWDTGIAFGTVGAEKDGQQIEITTFRSDSYDGTSRKP--EVTFGDTLEGD 118 (466)
T ss_pred HcCCCCCCEEEEeCCCHHHHHHHHHHhhhhccccCcccceEEEEECCcEEEEEecccccCcCCCCCC--cccCCCCHHHH
Confidence 68999999999999999999999873 3478999999999999999999999998766543322 11113468999
Q ss_pred hHHhhhhccCCccccceeecCCCC---eEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHHH
Q 024381 77 FIRWRNCLQRDFTINGLMFDPYAK---IIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETA 153 (268)
Q Consensus 77 L~r~~d~~rRDFTINAma~~~~~~---~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t~ 153 (268)
|. |||||||||||++.++ .|+|||||++||++|+||++++|.++|.|||+||||+||||+++||.|+++|.
T Consensus 119 l~------rRDFTiNA~a~~~~~~~~g~l~D~~~G~~Dl~~~~ir~v~~~~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~ 192 (466)
T TIGR02692 119 LI------RRDFTVNAMAVRIPADGSLEFHDPVGGLDDLLAKVLDTPATPEQSFGDDPLRMLRAARFVSQLGFEVAPRVR 192 (466)
T ss_pred HH------hccccHHHhhccccCCCCceeecCCCcHHHHhCCceEecCChHHhhhhChHHHHHHHHHHHHhCCCcCHHHH
Confidence 96 9999999999999754 89999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHh-h-cCCccCchhHhHHHHHHh--c
Q 024381 154 HFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV-K-HGFRRRDKRSNLLLVIST--Y 229 (268)
Q Consensus 154 ~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~-q-~~yH~~d~~~~~l~~l~~--~ 229 (268)
++|++++..+..++.||++.||.++|.++++..+++.|+++|+|..+|||+..+.. | +.||++|++.|++..+-. .
T Consensus 193 ~~i~~~~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~glL~~~~Pe~~~~~~~~~~~~h~~~v~~Htl~vl~~~~~ 272 (466)
T TIGR02692 193 AAMTEMADQIERISAERVRVELDKLLLGDHPRAGIDLMVETGLADRVLPEIPALRLEIDEHHQHKDVYEHSLTVLRQAID 272 (466)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhhhhhhhcCchHHHHhcccccCCCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998753 5 678889999998765432 1
Q ss_pred c---CchhHHHHHHHhcccCCCCC
Q 024381 230 L---LLIITLFFFEILSFLGYSRG 250 (268)
Q Consensus 230 ~---~~~~~L~lA~LlHDIGKg~g 250 (268)
+ ....+|+||+|||||||+.+
T Consensus 273 l~~~~~~~~l~lAaLLHDiGK~~t 296 (466)
T TIGR02692 273 LEDDGPDLVLRWAALLHDIGKPAT 296 (466)
T ss_pred ccccccCHHHHHHHHHhhccCCCC
Confidence 1 23447999999999999974
No 2
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=100.00 E-value=8.5e-56 Score=416.39 Aligned_cols=245 Identities=27% Similarity=0.331 Sum_probs=206.8
Q ss_pred CCCCCCCceEEEe-CCCHHHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccCccccc-cCCCCCChhhhH
Q 024381 1 MLNRIPKDFDIIT-SAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEF-ERPIGCDEKDFI 78 (268)
Q Consensus 1 llg~~~~D~Di~t-~~~~~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~-~~~~~~~~eDL~ 78 (268)
|||++|+|+|||| .++|+++.+. +...+|+.|+++... +...|++++|++.+.+.+...+++ ..|..+++|||.
T Consensus 14 Llg~~~~D~D~vv~~~~~~~~~~~--~~~~~g~~f~v~~~~--~~~~e~~~~r~er~~~~g~~~~~~~~~~~~~l~eDl~ 89 (409)
T PRK10885 14 LLGLPVKDRDWVVVGATPEEMLAQ--GYQQVGKDFPVFLHP--KTHEEYALARTERKSGRGYTGFTCYAAPDVTLEEDLI 89 (409)
T ss_pred HcCCCCCCeeEEeeCChHHHHHhC--CCeecCceeEEEEeC--CceEEEEeeeeccccCCCCCCceeccCCCCCHHHHHH
Confidence 6899999999976 4688887664 345689999987543 456799999998876654333332 345678999996
Q ss_pred HhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHh---CCCCCHHHHHH
Q 024381 79 RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAHF 155 (268)
Q Consensus 79 r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~---gf~i~~~t~~~ 155 (268)
|||||||||||+. .|.|+|||||++||++|+||++++ +|.|||+||||++|||+++ ||+|+++|+++
T Consensus 90 ------RRDfTiNA~a~~~-~~~liDp~~G~~Dl~~~~lr~v~~---~f~eDPlRiLRa~RFaarl~~lgf~i~~~T~~~ 159 (409)
T PRK10885 90 ------RRDLTINAMAQDD-DGELIDPYGGQRDLEARLLRHVSP---AFAEDPLRVLRVARFAARFAHLGFRIAPETLAL 159 (409)
T ss_pred ------hccchhhhheeCC-CCCEecCCCCHHHHhCCceEeCCc---hhhhCHHHHHHHHHHHHHhccCCCCcCHHHHHH
Confidence 9999999999996 467999999999999999999985 5999999999999999999 99999999999
Q ss_pred HHHcCc--cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHh--h-cCCcc-CchhHhHHHHH--H
Q 024381 156 VKHLSP--SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV--K-HGFRR-RDKRSNLLLVI--S 227 (268)
Q Consensus 156 i~~~~~--~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~--q-~~yH~-~d~~~~~l~~l--~ 227 (268)
|++++. .+..+++||++.||.++|.++++..+++.|+++|+|..+|||+..+.+ | +.||. +|++.|++..+ +
T Consensus 160 i~~~~~~~~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~l~~~~Q~~~~H~e~dv~~Htl~~l~~~ 239 (409)
T PRK10885 160 MREMVASGELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEIDALFGVPQPAKWHPEIDTGIHTLMVLDQA 239 (409)
T ss_pred HHHhhhhchhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHHHhcCCCCcCCCCCCcHHHHHHHHHHHH
Confidence 999877 888899999999999999999999999999999999999999999865 6 67886 69988877544 3
Q ss_pred hccCchhHHHHHHHhcccCCCCCC--------ccccCCcc
Q 024381 228 TYLLLIITLFFFEILSFLGYSRGQ--------TDCSRGSL 259 (268)
Q Consensus 228 ~~~~~~~~L~lA~LlHDIGKg~g~--------~h~~~g~~ 259 (268)
+.+.....++||+||||||||.+. +|+..|+.
T Consensus 240 ~~l~~~l~lr~AaLlHDlGK~~t~~~~~~~~~gH~~~Ga~ 279 (409)
T PRK10885 240 AKLSPSLDVRFAALCHDLGKGLTPPEEWPRHHGHEPRGVK 279 (409)
T ss_pred HhcCCCHHHHHHHHhccccCCCCCcccCcccCchhHhHHH
Confidence 455667789999999999998632 67777753
No 3
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=1.9e-54 Score=404.21 Aligned_cols=235 Identities=26% Similarity=0.290 Sum_probs=196.2
Q ss_pred CCCCCCCceEEEeCC-CHHHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccCcccccc-CCCCCChhhhH
Q 024381 1 MLNRIPKDFDIITSA-ELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFE-RPIGCDEKDFI 78 (268)
Q Consensus 1 llg~~~~D~Di~t~~-~~~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~-~~~~~~~eDL~ 78 (268)
|||++|+|+||+|++ +|+++.+. +...+|+.|||+.+. ....|++++|++.+.+.+.-.+... .|..+++|||.
T Consensus 14 LLg~~~~D~D~vv~g~~~~~~~~~--~~~~vG~~f~v~l~~--~~~~e~a~aRter~~g~g~~g~~~~~~~~~tleeDL~ 89 (417)
T PRK13298 14 LLNLPVKDKDWVVVGGTPKILLSI--NFQQVGKDFPVFLHP--ETHEEYALARTERKSGVGYTGFITDTSSDVTLEEDLI 89 (417)
T ss_pred HcCCCCCCeeEEecCCCHHHHHHH--HHHHhCCeeEEEEeC--ceeEEEEeecccccccCCCCCcccccCCCCCHHHHHH
Confidence 689999999998876 58877552 233589999997653 3567999999987765432222222 24568899996
Q ss_pred HhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHh---CCCCCHHHHHH
Q 024381 79 RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAHF 155 (268)
Q Consensus 79 r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~---gf~i~~~t~~~ 155 (268)
||||||||||||+. |.|+|||||++||++|+||++++ +|.|||+||||++|||+++ ||+|+++|.++
T Consensus 90 ------RRDFTINAmA~~~~-g~liDp~~G~~DL~~r~lR~v~~---~F~EDPLRiLRa~RFaar~~~lgF~i~~~T~~~ 159 (417)
T PRK13298 90 ------RRDLTINAIAQDEN-GNYIDPFQGKKDIQLRLLRHVSE---SFIEDPLRVLRVARFAALLVHLGFKIAKETMIL 159 (417)
T ss_pred ------hcccceeeeEECCC-CCEEeCCCcHHHHHCCcEecCCc---ccccCHHHHHHHHHHHHHhccCCCccCHHHHHH
Confidence 99999999999986 56899999999999999999974 7999999999999999995 99999999999
Q ss_pred HHHcC--ccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHh--hc---CCccCchhHhHHHHHH-
Q 024381 156 VKHLS--PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV--KH---GFRRRDKRSNLLLVIS- 227 (268)
Q Consensus 156 i~~~~--~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~--q~---~yH~~d~~~~~l~~l~- 227 (268)
|++++ ..|..+++|||+.|+.|+|.+++|+.+++.|.++|+|..+|||+..+.+ |+ .+|+.|++.|++..+.
T Consensus 160 i~~~~~~~~l~~~s~ERI~~El~k~L~~~~p~~~~~~L~~~g~L~~~~PEl~~~~g~~q~~~~~~~~~d~~~htl~~l~~ 239 (417)
T PRK13298 160 MCIMVKKHELLYLTPERIWNETEKALKTDNPHVYFQVLYECNALKFLFPEIDFLYEKPYFLNSFFKKFNLGNYILMGLSK 239 (417)
T ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCcchHHHcCCCCCccccCCchhHHHHHHHHHHH
Confidence 99987 7899999999999999999999999999999999999999999999864 52 3666788888765433
Q ss_pred -hccCchhHHHHHHHhcccCCCC
Q 024381 228 -TYLLLIITLFFFEILSFLGYSR 249 (268)
Q Consensus 228 -~~~~~~~~L~lA~LlHDIGKg~ 249 (268)
..+..+..++||+|||||||+.
T Consensus 240 ~~~~~~~l~lR~AaLlHDiGK~~ 262 (417)
T PRK13298 240 ISKLTKDIDIRFSYLCQFLGSMI 262 (417)
T ss_pred HHhcCCCHHHHHHHHHhhhcCCC
Confidence 3345677899999999999985
No 4
>PRK11623 pcnB poly(A) polymerase I; Provisional
Probab=100.00 E-value=2.8e-53 Score=399.86 Aligned_cols=204 Identities=32% Similarity=0.558 Sum_probs=185.4
Q ss_pred CCCCCCCceEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccCccccc--------c-CCCC
Q 024381 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEF--------E-RPIG 71 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~--------~-~~~~ 71 (268)
|||++|||+||+|+++|+++.++|.++..+|++|++++|..++..+||+|||++..+..+..+... + +..+
T Consensus 80 LLG~~pkD~DIaT~A~peev~~lf~~~r~iGrrF~~~hV~~~~~~iEVaTfR~~~~~~~~~~~~~~~~~~g~~~rdn~~g 159 (472)
T PRK11623 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNESDRNTSQRGQNGMLLRDNIFG 159 (472)
T ss_pred HcCCCCCCEEEecCCCHHHHHHHhhhCeeecCCCCEEEEEECCceEEEeccccccccccccccccccCCCCceecccCCC
Confidence 699999999999999999999999988889999999999999999999999987654322111000 0 1236
Q ss_pred CChhhhHHhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHH
Q 024381 72 CDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRE 151 (268)
Q Consensus 72 ~~~eDL~r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~ 151 (268)
+++|||. ||||||||||||+.++.|+|||||++||++|+||++++|+++|.|||+|||||+|||+++||.|+++
T Consensus 160 tieeDl~------RRDFTINALayd~~~~~IiD~~gG~~DLk~riLR~IGdp~~rf~EDPlRmLRAvRFAArLgF~Ie~~ 233 (472)
T PRK11623 160 SIEEDAQ------RRDFTINSLYYSVADFTVRDYVGGMKDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPE 233 (472)
T ss_pred CHHHHHH------hccccHHHheecCCCCeEecCCCCHHHHhCCceeecCChHhhcccchHHHHHHHHHHHHhCCCcCHH
Confidence 7899986 9999999999999888999999999999999999999998999999999999999999999999999
Q ss_pred HHHHHHHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHhh
Q 024381 152 TAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210 (268)
Q Consensus 152 t~~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~q 210 (268)
|..+|++++..|..+|+|||+.|+.|+|.++++..+++.|.++|+|..+|||+..++.+
T Consensus 234 T~~aI~~~a~lL~~vs~eRI~~El~KlL~~~~~~~~~~lL~e~GLl~~lfPel~~~~~~ 292 (472)
T PRK11623 234 TAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTE 292 (472)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999998764
No 5
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=100.00 E-value=4.1e-52 Score=387.40 Aligned_cols=201 Identities=35% Similarity=0.595 Sum_probs=183.4
Q ss_pred CCCCCCCceEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccCccccccC----CCCCChhh
Q 024381 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFER----PIGCDEKD 76 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~~----~~~~~~eD 76 (268)
|||++|+|+||+|+++|+++.++|+++..+|++|++++|..++..+||++||++.+.. ...+... ..+++++|
T Consensus 43 LLG~~pkD~DIat~a~peei~~lf~~~~~iG~rf~~~~v~~~~~~iEvatfR~~~~~~---~~~~g~~~~d~~~gtieeD 119 (410)
T TIGR01942 43 LLGIEPKDFDVVTSATPEEVRKLFRNSRIVGRRFRLVHVSFGRQIIEVATFRSGHKSS---VNAEGRILKDNVYGTLEED 119 (410)
T ss_pred HcCCCCCCEEEEcCCCHHHHHHHhhhCeecCCCCCEEEEEECCEEEEEecccccccCC---CCCCCCcccccccCCHHHH
Confidence 6899999999999999999999999888899999999999999999999999864321 1111111 13688999
Q ss_pred hHHhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 024381 77 FIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFV 156 (268)
Q Consensus 77 L~r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t~~~i 156 (268)
+. ||||||||||||+.+++|+|||||++||++|+||++++|.++|.|||+|||||+|||+++||.|+++|.++|
T Consensus 120 l~------RRDFTINALayd~~~~~IiD~~gG~~DL~~~~LR~igdp~~rf~EDPlRiLRAvRFaa~LgF~Ie~~T~~~I 193 (410)
T TIGR01942 120 AW------RRDFTVNALYYDPSREVIIDYVGGMEDLKNRRLRLIGDPRSRYQEDPVRMLRALRFSVKLEFTIDESTARPI 193 (410)
T ss_pred hh------cCCchhhheeecCCCCeeeCCCCcHHHHHCCceeecCChhhcccccHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 96 999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHhh
Q 024381 157 KHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210 (268)
Q Consensus 157 ~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~q 210 (268)
++++..|..+|++||+.|+.|++.++++..+++.|.++|+|..+||++...+.+
T Consensus 194 ~~~a~~L~~vs~eRI~~El~Kll~~~~~~~~l~~L~~~gll~~lfPel~~~l~~ 247 (410)
T TIGR01942 194 RESAPLLKGIPPARLFEEILKLLFSGRSAALFRMLCGYQLLEPLFPSVAYALRE 247 (410)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHHHHHhc
Confidence 999999999999999999999999999999999999999999999999976653
No 6
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=9.4e-52 Score=387.31 Aligned_cols=229 Identities=28% Similarity=0.334 Sum_probs=193.7
Q ss_pred CCCCCCCceEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccCccccccCCCCCChhhhHHh
Q 024381 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRW 80 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~~~~~~~~eDL~r~ 80 (268)
|||++|+|+||+|++.|+++++.|++...+|..|||+.|..++..+||+++|++..+..+..+... ...+++++||.
T Consensus 34 LLg~~~~DiDi~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~~~~ei~t~R~e~~~~d~~~p~~~-~~~~~i~eDl~-- 110 (394)
T PRK13299 34 LLGRPIHDVDIATSAYPEEVKAIFPRTVDVGIEHGTVLVLENGEEYEVTTFRTESEYVDYRRPSEV-TFVRSLEEDLK-- 110 (394)
T ss_pred HcCCCCCCEEEecCCCHHHHHHHhhhhhhccccCCEEEEEECCEEEEEEeeccccCccCCCCCccc-cCCCCHHHHHH--
Confidence 689999999999999999999999987789999999999999999999999998544332222111 11257899996
Q ss_pred hhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHHHHHHHHcC
Q 024381 81 RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLS 160 (268)
Q Consensus 81 ~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t~~~i~~~~ 160 (268)
|||||||||||++. |.|+|||||++||++|+||++++|.++|.|||+|||||+||++++||+++++|.++|++++
T Consensus 111 ----RRDFTINAma~~~~-g~liDpf~G~~DL~~~~iR~v~~~~~~f~eDplRiLRa~Rfaa~l~f~i~~~t~~~i~~~~ 185 (394)
T PRK13299 111 ----RRDFTINAIAMDEN-GEIIDLFDGLEDLKNRLIRAVGNAEERFQEDALRMMRAVRFASQLGFDLETETFEAMKTQA 185 (394)
T ss_pred ----hccccHHHhhcCCC-CCEeeCCCCHHHHhCCceeecCCHHHhhccCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 99999999999986 6699999999999999999999988899999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHhhcCCccCchhHhHHHHHHhccCchhHHHHHH
Q 024381 161 PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLVISTYLLLIITLFFFE 240 (268)
Q Consensus 161 ~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~q~~yH~~d~~~~~l~~l~~~~~~~~~L~lA~ 240 (268)
+.+..+|.|||+.||.++|.++++..+++.|.++|++.. +|++..... ....+.. .......+..+.||+
T Consensus 186 ~~l~~vs~eRI~~El~kll~~~~~~~~l~~l~~~gll~~-~p~l~~~~~--------~~~~~~~-~~~~~~~~~~~~~a~ 255 (394)
T PRK13299 186 PLLEKISVERIFVEFEKLLLGPFWRKGLKLLIETGLYNY-LPGLKGKEE--------NLLKLTQ-LLWFSFETSEQAWAA 255 (394)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHCChHHh-CcccccchH--------HHHHHHH-HHhccCCCHHHHHHH
Confidence 999999999999999999999999999999999999998 899764211 0001111 111222456689999
Q ss_pred HhcccCC
Q 024381 241 ILSFLGY 247 (268)
Q Consensus 241 LlHDIGK 247 (268)
||||+||
T Consensus 256 ll~~~~~ 262 (394)
T PRK13299 256 LLISLKI 262 (394)
T ss_pred HHHhcCH
Confidence 9999986
No 7
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.4e-50 Score=377.08 Aligned_cols=236 Identities=33% Similarity=0.471 Sum_probs=199.7
Q ss_pred CCCCCCCceEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccc-ccccCccccccCCCCCChhhhHH
Q 024381 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-RFSRDFKYEFERPIGCDEKDFIR 79 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~-~~~~~~~~d~~~~~~~~~eDL~r 79 (268)
|||++|+|+||+|++.|+++.++|++...+|+.|||+++..++..+|++|||++.+ +.+... ...+.+++++||.
T Consensus 36 LLG~~~~D~Diat~~~p~~~~~~~~~~~~~G~~f~t~~v~~~~~~~ev~T~R~~~~~~~~~~~---~~~~~~tleeDl~- 111 (412)
T COG0617 36 LLGRPPKDVDIATNATPEEVKKLFRNTRPVGRKFGTVTVPFNGEIIEVTTFRKEGYGYNGRPL---PVVFPGTLEEDLK- 111 (412)
T ss_pred HcCCCCcceeeeCCCCCHHHHHHHhhhhhhhhhcCeEEeccCCEEEEEEEeecCCCCcCCCcC---CcCCCCCHHHHHH-
Confidence 69999999999999999999999998889999999999999889999999999975 221111 1234578899996
Q ss_pred hhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHHHHHHHHc
Q 024381 80 WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHL 159 (268)
Q Consensus 80 ~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t~~~i~~~ 159 (268)
|||||||||||++.+|+|+|||||+.||++|+||++++|+++|.|||+||||++||++++||.+++.|..+|+..
T Consensus 112 -----RRDFTINAla~~~~~~~iiD~~gG~~DL~~~~lR~i~~~~~rf~EDplRiLRa~RFaa~l~f~i~~~t~~~i~~~ 186 (412)
T COG0617 112 -----RRDFTINALAYDPEDGEIIDPFGGLKDLENRVLRHIGDASERFREDPLRILRAARFAARLGFTIEPETEEAIRLM 186 (412)
T ss_pred -----HhcccHHhhccCCCCCeEEeCCCCHHHHhcCceeccCCHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHh-----------hcCCccCchhHhHHHHHHh
Q 024381 160 SPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV-----------KHGFRRRDKRSNLLLVIST 228 (268)
Q Consensus 160 ~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~-----------q~~yH~~d~~~~~l~~l~~ 228 (268)
...+..+|.||++.|+.|+|.++++..+++.|.++|++..++|++..... ...+|..+.+... +.
T Consensus 187 ~~~~~~is~ERi~~El~KlL~~~~~~~~l~~l~~~g~l~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 262 (412)
T COG0617 187 APLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILFPELDKLFGVPKLLLALREIELLLHNTDELLLA----LA 262 (412)
T ss_pred HHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChhhcChhHHHhhcCcchhhhhHHHHHhccccchHHHH----HH
Confidence 99888899999999999999999999999999999999999999986311 0223333332221 12
Q ss_pred ccCchhHHHHHHHhcccCCCC
Q 024381 229 YLLLIITLFFFEILSFLGYSR 249 (268)
Q Consensus 229 ~~~~~~~L~lA~LlHDIGKg~ 249 (268)
.+........+.+.|+++|+.
T Consensus 263 ~l~~~~~~~~~~~~~~~~~~~ 283 (412)
T COG0617 263 ALLPAFLLAAATLPLLLRKGK 283 (412)
T ss_pred hcCcHhHHHHHhhhhHHHHHh
Confidence 222334566777888887764
No 8
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=2e-47 Score=350.40 Aligned_cols=219 Identities=23% Similarity=0.237 Sum_probs=181.0
Q ss_pred CCCCCCCceEEEeC-CCHHHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccCccccc-cCCCCCChhhhH
Q 024381 1 MLNRIPKDFDIITS-AELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEF-ERPIGCDEKDFI 78 (268)
Q Consensus 1 llg~~~~D~Di~t~-~~~~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~-~~~~~~~~eDL~ 78 (268)
|||++|+|+||+|+ +.|+++++. ....+|+.|+++.. .+..+|++++|+|.+.+.+...+.+ ..|..+++|||.
T Consensus 25 LLg~~~~D~D~vv~ga~pe~l~~~--~~~~vG~~f~v~l~--~~~~~e~a~aRterk~g~g~~~f~~~~~~~~tLeeDL~ 100 (364)
T PRK13297 25 LLGLPAGDRDWVVVGATPEDMARR--GFIPVGGDFPVFLH--PRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQ 100 (364)
T ss_pred HcCCCCCCeeeeccCChHHHHHhc--CceeeCCEEEEEEe--CCceEEEEEEEEeeccCCCCceeEEeCCCCCCHHHHHH
Confidence 68999999998765 569999885 35578999987542 3456799999999876654322222 223467899996
Q ss_pred HhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Q 024381 79 RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLG-FRFSRETAHFVK 157 (268)
Q Consensus 79 r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~g-f~i~~~t~~~i~ 157 (268)
||||||||||++.. |.|+|||||++||++|+||++++ +|.|||+||||++|||+++| |+|+++|.++|+
T Consensus 101 ------RRDFTINAmA~~~~-g~liDpfgG~~DL~~riLR~v~~---~F~EDPLRILRa~RFaarlg~F~i~~eT~~~~~ 170 (364)
T PRK13297 101 ------RRDLTVNAIARTPQ-GELVDPLDGVADVRARVLRHVGE---AFAEDPVRILRLGRFAARFGDFSIAPETMQLCR 170 (364)
T ss_pred ------hccceeeeeEECCC-CCEEECCCCHHHHhCCCeeeCcc---ccccCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 99999999999975 67999999999999999999984 79999999999999999996 999999999999
Q ss_pred HcCc--cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHhhcCCccCchhHhHHHHHHhccCchhH
Q 024381 158 HLSP--SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLVISTYLLLIIT 235 (268)
Q Consensus 158 ~~~~--~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~q~~yH~~d~~~~~l~~l~~~~~~~~~ 235 (268)
+++. .+..+++|||+.|+.|+|.+++|..+++.|.++|+|..+|||+..+.+. | ..+ +.++.+..+..
T Consensus 171 ~~~~~~~l~~l~~ERI~~El~k~L~~~~p~~~l~~L~~~g~L~~l~Pel~~~~~~---~------~~l-~~a~~~~~~~~ 240 (364)
T PRK13297 171 RMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDDAAV---R------AEI-DRAAAAGLPLA 240 (364)
T ss_pred HHhhhcccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCccccccccc---c------HHH-HHHHhcCCChH
Confidence 9874 6889999999999999999999999999999999999999998775432 1 122 23344556677
Q ss_pred HHHHHHhc
Q 024381 236 LFFFEILS 243 (268)
Q Consensus 236 L~lA~LlH 243 (268)
++||+|+|
T Consensus 241 ~r~a~L~~ 248 (364)
T PRK13297 241 GRYALLCR 248 (364)
T ss_pred HHHHHHHc
Confidence 89999998
No 9
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=1.1e-43 Score=323.26 Aligned_cols=191 Identities=24% Similarity=0.336 Sum_probs=159.5
Q ss_pred CCCCCCCceEEEeCCCH-HHHHH-HhccCcccccccceEEEEeCCEEEEEecccccccccccCccccccC-CCCCChhhh
Q 024381 1 MLNRIPKDFDIITSAEL-KEVVR-VFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFER-PIGCDEKDF 77 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~-~~~~~-~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~~-~~~~~~eDL 77 (268)
|||++|+|+||+|++.+ +++.. .+. .+|+.|+++. ..+..+|++++|+|.++.++.-+..+.. +.++++|||
T Consensus 14 LLgr~p~DiDivV~g~~~~~~l~~~~~---~vg~~f~V~~--~~~~~~Eiat~R~E~~~~~g~~~~~v~~~~~~tieeDL 88 (360)
T PRK13296 14 LLGITPKDKDWVVVGATEDEMLANGFI---KIAANFPVFI--HPQTKQEYALARSEKKTASGYHGFEVNFSKYITLEDDL 88 (360)
T ss_pred HcCCCCCCeeEEecCCcHHHHHHhhhh---hcCCceEEEE--ECCeeEEEeeccccccccCCCCCCeEeeCCCCCHHHHH
Confidence 69999999999877654 44432 333 4688888753 3567899999999987766543332221 234789999
Q ss_pred HHhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHh---CCCCCHHHHH
Q 024381 78 IRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAH 154 (268)
Q Consensus 78 ~r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~---gf~i~~~t~~ 154 (268)
. |||||||||||++. |.|+|||||++||++|+||+++ .+|.|||+|||||+||++++ ||.++++|.+
T Consensus 89 ~------RRDFTINAmA~d~~-g~liDpfgG~~DL~~kiLR~v~---~sF~EDPLRILRa~RFaarL~~~gF~ie~eT~~ 158 (360)
T PRK13296 89 K------RRDLTINSIAIDQN-NKVIDPFNGQADLQNRILRHTS---IAFIEDPLRVVRLARFKAQLSNFNFSIAQEMLA 158 (360)
T ss_pred H------hcCcceeeeEECCC-CCEecCCCCHHHHHCCceecCc---cccccCHHHHHHHHHHHHHhccCCCCcCHHHHH
Confidence 6 99999999999986 6799999999999999999985 48999999999999999986 9999999999
Q ss_pred HHHHcC--ccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhH
Q 024381 155 FVKHLS--PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208 (268)
Q Consensus 155 ~i~~~~--~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~ 208 (268)
+|++++ ..|..++.||++.||.|++.+ +..+++.|.++|+|..++||+..+.
T Consensus 159 ~i~~~~~~~~L~~vs~ERI~~El~kiL~~--p~~~l~~L~~~glL~~lfPel~~~~ 212 (360)
T PRK13296 159 LIKELVKTGELNHLTRERLHIEFVKALNN--PKIFFTTLKELEALKIIFPNISCIL 212 (360)
T ss_pred HHHHhhhhhhhhcCCHHHHHHHHHHHHhC--hHHHHHHHHHcCCHHHhCcchHHHh
Confidence 999975 578999999999999999974 5678999999999999999998864
No 10
>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-40 Score=304.06 Aligned_cols=199 Identities=44% Similarity=0.693 Sum_probs=166.5
Q ss_pred CCCCCCCceEEEeCCCHHHHHHHhccCcc-cccccceEEEEeC---------------CEEEEEecccccccccccCccc
Q 024381 1 MLNRIPKDFDIITSAELKEVVRVFSQCEI-VGKRFPICHVHFE---------------NTIVEVSSFSTSGRRFSRDFKY 64 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~~~~~~~f~~~~~-~g~~f~~~~v~~~---------------~~~~ev~~~r~~~~~~~~~~~~ 64 (268)
|||++|+|+||+|++.+.|+.+.|.++.. +|+.++.+++..+ +..+|++..|.+.+...
T Consensus 42 LLg~~p~DiDiatta~~g~~~e~f~~~~~~~~~~~~~~h~~~np~~skhletat~~i~~~~iD~v~lr~~~y~e~----- 116 (416)
T KOG2159|consen 42 LLGREPKDIDIATTAMSGQMKEMFQSAQIRVGKKFPICHVIMGPIKSKHLETATFRITTLRIDFVNLRREAYTET----- 116 (416)
T ss_pred HcCCCCcccceeeccccHHHHHHHHHHHHhhcccCCcceeecCCcceeeecceeeeeeccccceeecCccccccc-----
Confidence 69999999999999999999999988764 8999988885432 22344444454443321
Q ss_pred cccCCCCCChhhhHHhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHh
Q 024381 65 EFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL 144 (268)
Q Consensus 65 d~~~~~~~~~eDL~r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~ 144 (268)
..|. ..|-.+|+||.|||||||+++|++.+|.|+|++||++||++++||++.+|.++|.|||+||||++|||+|+
T Consensus 117 --~~~~---~~dgt~~~nalRRD~TIN~Lffn~~~~~VeDytgG~eDL~~~kvrt~~~A~~tf~eDpLRILR~iRFaaRl 191 (416)
T KOG2159|consen 117 --SIPY---VTDGTRDENALRRDFTINSLFFNPFDGTVEDYTGGLEDLKNKKVRTVLHAKQTFLEDPLRILRGIRFAARL 191 (416)
T ss_pred --CCCC---CCcCcchhhhhhhccchhhhhccCCCCceeeccccHhHHhcCeEEeeccccceeccchHHHHHHHHHHHhh
Confidence 1111 22333455667999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC---CHHHHHHHHHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCchhhhhhhHHhHh
Q 024381 145 GFRF---SRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK-FGLLEVLLPIQAAYLV 209 (268)
Q Consensus 145 gf~i---~~~t~~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~-~glL~~llPe~~~~~~ 209 (268)
||++ ..+|+.+++.++..+..+++|||+.|+.|||.++.+..+|++|++ .++...++|--+....
T Consensus 192 gftid~~~~e~~~~~k~~~~~~~kIS~ERI~~Ei~kmL~g~~~~~~L~ll~~~~~~~~i~lp~~~s~~~ 260 (416)
T KOG2159|consen 192 GFTIDEESKETLEAIKENVALLAKISRERIGVEINKMLVGNSAEASLRLLWRLFGFEYIFLPIEASLEE 260 (416)
T ss_pred cCccCcccHHHHhhHHHHHHHhccccHHHHHHHHHHHHcCCcHHHHHHHHHHhcCceEEeccchhhhhh
Confidence 9999 678888888998899999999999999999999999999999999 7777777887777643
No 11
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3e-29 Score=256.13 Aligned_cols=156 Identities=14% Similarity=0.139 Sum_probs=139.1
Q ss_pred EeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhC--CCCCHHHHHHHHHcCccccCC--CHHHHHHHHHH
Q 024381 102 IYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLG--FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNY 177 (268)
Q Consensus 102 l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~g--f~i~~~t~~~i~~~~~~l~~~--~~eRi~~El~k 177 (268)
.+||++|..|+++|.|+++++ ..|.+||+||||+|||+++.+ ..++++|+++|++++..++.. +.+|++.||.+
T Consensus 339 ~~~~~~~~~~l~~~~i~~~~~--~~f~~dP~riLr~f~~~a~~~~i~~i~~~t~~~i~~~~~~i~~~~~~~~~~~~~f~~ 416 (895)
T PRK00275 339 TIQPLNSRFQLRDGYIEATHP--NVFKRTPFALLEIFVLMAQHPEIKGVRADTIRLLREHRHLIDDAFRNDIRNTSLFIE 416 (895)
T ss_pred cccccCCCeEEECCEEEecCh--hhhhcCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhcCchhccCHHHHHHHHH
Confidence 579999999999999999997 779999999999999999965 567899999999999888886 77899999999
Q ss_pred HHhCCCH-HHHHHHHHHcCCchhhhhhhHHhHh--h-cCCccCchhHhHHH---------------------HHHhccCc
Q 024381 178 MLAYGSA-EASLRLLWKFGLLEVLLPIQAAYLV--K-HGFRRRDKRSNLLL---------------------VISTYLLL 232 (268)
Q Consensus 178 iL~~~~~-~~~l~~m~~~glL~~llPe~~~~~~--q-~~yH~~d~~~~~l~---------------------~l~~~~~~ 232 (268)
||.++++ ..+|+.|+++|+|+.++|||+++.+ | +.||+++++.|++. +++.++++
T Consensus 417 iL~~~~~~~~~l~~M~~~GvL~~~iPe~~~i~~~~Q~d~yH~ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~ 496 (895)
T PRK00275 417 LFKCPIGIHRNLRRMNRYGILGRYLPEFGHIVGQMQHDLFHIYTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPK 496 (895)
T ss_pred HHcCCCchHHHHHHHHHcCCHHHhCchHhhEeeeccCcccccCcHHHHHHHHHHHHHHhhcccccccCchHHHHHHhcCC
Confidence 9999875 6789999999999999999999975 6 88999999877653 34455667
Q ss_pred hhHHHHHHHhcccCCCCCCccccCCcc
Q 024381 233 IITLFFFEILSFLGYSRGQTDCSRGSL 259 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg~g~~h~~~g~~ 259 (268)
+.+|+||+||||||||+++|||..|.-
T Consensus 497 ~~lL~lAaLlHDIGKg~~~~Hs~~Ga~ 523 (895)
T PRK00275 497 PELLYIAGLYHDIGKGRGGDHSELGAV 523 (895)
T ss_pred HHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 889999999999999999999999964
No 12
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.2e-28 Score=246.68 Aligned_cols=148 Identities=19% Similarity=0.127 Sum_probs=132.3
Q ss_pred HHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHHHHHHHHcCccccCCCHHHHHHHHHHHHhCCCH-HHHH
Q 024381 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSA-EASL 188 (268)
Q Consensus 110 ~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t~~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~-~~~l 188 (268)
.-+.+|.|.+..+ .+|.+||+||||+||||+++||.|+++|+++|+++++.+..++.||++.||.++|.++++ ..++
T Consensus 311 ~~~~~~~l~~~~~--~~~~~DplRiLRa~rfaa~lgf~I~~~T~~~i~~~~~~l~~~~~eri~~ef~kiL~~~~~~~~~l 388 (774)
T PRK03381 311 VVEHAGEVVLARD--ARPARDPGLVLRVAAAAATTGLPIAAATLSRLAASAPPLPTPWPAEARDDLLVLLGAGPAAVAVI 388 (774)
T ss_pred eEEECCEEEeCCc--cccccCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCchHHHH
Confidence 3467888888776 789999999999999999999999999999999999999999999999999999988765 5799
Q ss_pred HHHHHcCCchhhhhhhHHhHh--h-cCCccCchhHhHHHH------HHhccCchhHHHHHHHhcccCCCCCCccccCCcc
Q 024381 189 RLLWKFGLLEVLLPIQAAYLV--K-HGFRRRDKRSNLLLV------ISTYLLLIITLFFFEILSFLGYSRGQTDCSRGSL 259 (268)
Q Consensus 189 ~~m~~~glL~~llPe~~~~~~--q-~~yH~~d~~~~~l~~------l~~~~~~~~~L~lA~LlHDIGKg~g~~h~~~g~~ 259 (268)
+.|+++|+|..++|||+.+.+ | +.||+++++.|++.. +..++.++.+|+||+||||||||+++||+..|..
T Consensus 389 ~~m~~~GvL~~~iPE~~~i~~~~Q~~~~H~ytVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGKg~~~~Hs~~Ga~ 468 (774)
T PRK03381 389 EALDRTGLWGRLLPEWEAVRDLPPRDPVHRWTVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGKGRGGDHSVVGAE 468 (774)
T ss_pred HHHHHhCCHHHhchhHHHhhCCCCCCCCccChHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCChHHHHHH
Confidence 999999999999999999975 6 889999998876643 3456678889999999999999999999999864
No 13
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.7e-28 Score=241.38 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=130.1
Q ss_pred CCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHHHHHHHHcCccccCCCHHHHHHHHHHHHhCC-CHH
Q 024381 107 GGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG-SAE 185 (268)
Q Consensus 107 ~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t~~~i~~~~~~l~~~~~eRi~~El~kiL~~~-~~~ 185 (268)
+...-+.+|.|++++++. + |||+||||+||||+++||+|+++|+++|+++ ..+.....+|++.||.++|.++ ++.
T Consensus 270 ~~~f~~~~~~I~~~~~~~--~-eDPlRiLRafrfAa~~gf~I~~~Tl~~i~~~-~~L~~~~~er~~~ef~kiL~s~~~~~ 345 (693)
T PRK00227 270 DVDVVDANGTIALSRTPD--L-DDPALPLRVAAAAARTGLPVSESVWKRLEEC-PELPEPWPASAAGDFFRLLSSPVNSR 345 (693)
T ss_pred CCCeEEECCEEEeCCCCc--c-cCHHHHHHHHHHHHhcCCCcCHHHHHHHHhh-hhcchhhHHHHHHHHHHHHcCCCChH
Confidence 433457899999998752 4 8999999999999999999999999999987 6677777889999999999986 778
Q ss_pred HHHHHHHHcCCchhhhhhhHHhHh--h-cCCccCchhHhHHHH------HHhccCchhHHHHHHHhcccCCCCCCccccC
Q 024381 186 ASLRLLWKFGLLEVLLPIQAAYLV--K-HGFRRRDKRSNLLLV------ISTYLLLIITLFFFEILSFLGYSRGQTDCSR 256 (268)
Q Consensus 186 ~~l~~m~~~glL~~llPe~~~~~~--q-~~yH~~d~~~~~l~~------l~~~~~~~~~L~lA~LlHDIGKg~g~~h~~~ 256 (268)
.+++.|+++|+|+.+||||+++.+ | +.||+++++.|++.. +..+++++.+|+||+||||||||+|+|||..
T Consensus 346 ~~L~~M~~~GvL~~llPE~~~i~g~~Q~d~yH~ytVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg~g~dHs~~ 425 (693)
T PRK00227 346 RVIKQMDRHGLWERIVPEWDRIRGLMPREPSHIHTIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKGYPRPHEQV 425 (693)
T ss_pred HHHHHHHHcCCHHHHhHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCCCCCChhHH
Confidence 999999999999999999999975 5 889999998887643 3345678999999999999999999999999
Q ss_pred Ccc
Q 024381 257 GSL 259 (268)
Q Consensus 257 g~~ 259 (268)
|.-
T Consensus 426 GA~ 428 (693)
T PRK00227 426 GAE 428 (693)
T ss_pred HHH
Confidence 864
No 14
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=99.95 E-value=2.5e-28 Score=195.30 Aligned_cols=111 Identities=31% Similarity=0.438 Sum_probs=86.3
Q ss_pred CCCCCCCceEEEeCCCHHHHHHHhccCc----ccccccceEEEEeCCEEEEEecccccccccccCccccccCCCCCChhh
Q 024381 1 MLNRIPKDFDIITSAELKEVVRVFSQCE----IVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKD 76 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~~~~~~~f~~~~----~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~~~~~~~~eD 76 (268)
|||++|+|+||+|+++++++++.|.+.. .+|++|+++++..++..+|++++|.+.+..++..+. ...-..++++|
T Consensus 12 Llg~~~~DiDi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~r~~~~~~~~~~~~-~~~~~~~i~~D 90 (126)
T PF01743_consen 12 LLGRPPKDIDIVTNADPEEFAKLLAKKLGGVFVVGKRFGTVRVVFGGGSIDIASFRGEFYIGDGRNPD-VVEFGPTIEED 90 (126)
T ss_dssp HHTS--SEEEEEESS-HHHHHHHHCTTCCEEEEEETTTTEEEEEETTCEEEEEE-ECE--SSSSS--C-CCCCSSTHHHH
T ss_pred HcCCCCCCeEEEEeCCHHHHHHHHHhhcccccccccccceeeecCCCccccccccccccccccccccc-cccccCCHHHH
Confidence 5899999999999999999999998653 348999999999988889999999987665433221 11112367888
Q ss_pred hHHhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEE
Q 024381 77 FIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118 (268)
Q Consensus 77 L~r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr 118 (268)
|. |||||||||||++.+|+|+|||||++||++|+||
T Consensus 91 l~------rRDFTiNAla~~~~~~~liDp~gG~~DL~~~~iR 126 (126)
T PF01743_consen 91 LK------RRDFTINALAYDLETGKLIDPFGGLEDLKNKIIR 126 (126)
T ss_dssp HC------TSSBGGGSEEEECTTTCEEESSSHHHHHHTTEE-
T ss_pred HH------hcCCeehheeEECCCCeEEcCCCCHHHHHcCCCC
Confidence 85 9999999999999999999999999999999997
No 15
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.95 E-value=8.1e-28 Score=245.44 Aligned_cols=153 Identities=18% Similarity=0.128 Sum_probs=134.7
Q ss_pred cCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHHHHHHHHcCccccCCCH--HHHHHHHHHHHhCC
Q 024381 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR--GRLLMEMNYMLAYG 182 (268)
Q Consensus 105 p~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t~~~i~~~~~~l~~~~~--eRi~~El~kiL~~~ 182 (268)
|.++..-+.+|.|++.++ .+|.+||+||||+|||++++||.|+++|+++|++++..+..++. +|++.||.+||.++
T Consensus 312 ~~~~~f~~~~~~l~~~~~--~~f~eDPlriLR~~rfaa~~~~~i~~~T~~~i~~~~~~l~~~~~~~er~~~ef~~iL~~~ 389 (850)
T TIGR01693 312 PLDEGFVEDGGELVLART--AVFERDPALLLRLFAIAAQRGLPIHPAALRQLTASLPLLPTPLREDPEARELFLELLTSG 389 (850)
T ss_pred ccCCCeEEECCEEEecCc--cchhhCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHcCC
Confidence 345445689999999987 89999999999999999999999999999999999988888866 99999999999876
Q ss_pred -CHHHHHHHHHHcCCchhhhhhhHHhHh--h-cCCccCchhHhHHH---------------------HHHhccCchhHHH
Q 024381 183 -SAEASLRLLWKFGLLEVLLPIQAAYLV--K-HGFRRRDKRSNLLL---------------------VISTYLLLIITLF 237 (268)
Q Consensus 183 -~~~~~l~~m~~~glL~~llPe~~~~~~--q-~~yH~~d~~~~~l~---------------------~l~~~~~~~~~L~ 237 (268)
++..+++.|+++|+|+.++|||+.+.+ | +.||+++++.|++. +++.+++++.+|+
T Consensus 390 ~~~~~~l~~m~~~gvL~~~iPe~~~i~~~~Q~~~~H~~tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 469 (850)
T TIGR01693 390 NGTVRALRAMNRAGVLGRFLPEWGRIVGQMQFDLFHVYTVDEHTLRTVVHLAPFARGRLAREHPLASELMPKIEDPELLY 469 (850)
T ss_pred CchHHHHHHHHHhCCHHHhCchHhhheeccccCceeecchhHHHHHHHHHHHHHhccccccccccHHHHHhccCCHHHHH
Confidence 568899999999999999999999875 5 78999998877543 3444566788999
Q ss_pred HHHHhcccCCCCCCccccCCcc
Q 024381 238 FFEILSFLGYSRGQTDCSRGSL 259 (268)
Q Consensus 238 lA~LlHDIGKg~g~~h~~~g~~ 259 (268)
||+||||||||++++|+..|..
T Consensus 470 lAaLlHDiGKg~~~~H~~~Ga~ 491 (850)
T TIGR01693 470 LAALLHDIGKGRGGDHSVLGAE 491 (850)
T ss_pred HHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999863
No 16
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=8.3e-28 Score=244.59 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=135.4
Q ss_pred cCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHh-C-CCCCHHHHHHHHHcCccccCC--CHHHHHHHHHHHHh
Q 024381 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL-G-FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNYMLA 180 (268)
Q Consensus 105 p~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~-g-f~i~~~t~~~i~~~~~~l~~~--~~eRi~~El~kiL~ 180 (268)
|.++...+.+|.|+++++ ..|.+||+||||+|||++++ + +.|++.|.++|++++..++.. +.||++.||.+||.
T Consensus 322 ~~~~~f~~~~~~i~~~~~--~~f~~dP~riLr~fr~aa~~~~~~~i~~~T~~~i~~~~~~i~~~~~~~er~~~ef~~iL~ 399 (856)
T PRK03059 322 VINERFVEKQGMLEIASD--DLFERHPHAILEAFLLYQQTPGLKGLSARTLRALYNARDVMNAAFRRDPVNRALFMQILQ 399 (856)
T ss_pred ccCCCeEEECCEEEecCc--hhhhcCHHHHHHHHHHHHhcCCccCcCHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHc
Confidence 446567799999999987 67999999999999999998 5 699999999999999999887 77999999999999
Q ss_pred CCCH-HHHHHHHHHcCCchhhhhhhHHhHh--h-cCCccCchhHhHHH---------------------HHHhccCchhH
Q 024381 181 YGSA-EASLRLLWKFGLLEVLLPIQAAYLV--K-HGFRRRDKRSNLLL---------------------VISTYLLLIIT 235 (268)
Q Consensus 181 ~~~~-~~~l~~m~~~glL~~llPe~~~~~~--q-~~yH~~d~~~~~l~---------------------~l~~~~~~~~~ 235 (268)
.+++ ..+|+.|+++|+|+.++|||+++.+ | +.||++|++.|++. +++.++.++.+
T Consensus 400 ~~~~~~~~l~~m~~~GlL~~~lPe~~~i~~~~Q~~~~H~ytVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~l 479 (856)
T PRK03059 400 QPRGITHALRLMNQTSVLGRYLPNFRRIVGQMQHDLFHVYTVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWL 479 (856)
T ss_pred CCCchHHHHHHHHHhCCHHHhCchHhheeeeecccccccCcHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhH
Confidence 9875 6899999999999999999999975 6 78999999877653 33445667899
Q ss_pred HHHHHHhcccCCCCCCccccCCcc
Q 024381 236 LFFFEILSFLGYSRGQTDCSRGSL 259 (268)
Q Consensus 236 L~lA~LlHDIGKg~g~~h~~~g~~ 259 (268)
|+||+||||||||+|++||..|.-
T Consensus 480 L~LAaLlHDIGKg~~~~Hs~~GA~ 503 (856)
T PRK03059 480 LYVAALFHDIAKGRGGDHSTLGAV 503 (856)
T ss_pred HHHHHHHHhhccCCCCCchHHHHH
Confidence 999999999999999999999863
No 17
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=5.8e-27 Score=240.86 Aligned_cols=149 Identities=14% Similarity=0.201 Sum_probs=126.9
Q ss_pred CCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHHHHHHHHcCccccC-----CCHHHHHHHHHHHHhC
Q 024381 107 GGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK-----LDRGRLLMEMNYMLAY 181 (268)
Q Consensus 107 ~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t~~~i~~~~~~l~~-----~~~eRi~~El~kiL~~ 181 (268)
+...-+.+|.|+++++ ..|.+||+||||+||||+++||.|+++|+++|+++...++. .+.+|++.|++ +..
T Consensus 379 ~~~f~~~~~~i~~~~~--~~f~edPlriLR~fr~aa~~~~~i~~~T~~~i~~~~~~i~~~~~~~~~~~r~f~eil--~~~ 454 (931)
T PRK05092 379 SDGFVVDNGRINLADP--DVFERDPVNLIRLFHLADRHGLDIHPDAMRLVTRSLRLIDAALREDPEANRLFLDIL--TSR 454 (931)
T ss_pred CCCeEEECCEEEecCh--hhhhhCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChhhccCHHHHHHHHHHH--cCC
Confidence 4344589999999987 78999999999999999999999999999999999887776 45677776653 334
Q ss_pred CCHHHHHHHHHHcCCchhhhhhhHHhHh--h-cCCccCchhHhHHH---------------------HHHhccCchhHHH
Q 024381 182 GSAEASLRLLWKFGLLEVLLPIQAAYLV--K-HGFRRRDKRSNLLL---------------------VISTYLLLIITLF 237 (268)
Q Consensus 182 ~~~~~~l~~m~~~glL~~llPe~~~~~~--q-~~yH~~d~~~~~l~---------------------~l~~~~~~~~~L~ 237 (268)
+++..+++.|+++|+|+.++|||+.+.+ | +.||.++++.|++. +++.+++++.+|+
T Consensus 455 ~~~~~~l~~m~~~GvL~~~iPef~~i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 534 (931)
T PRK05092 455 RNPERVLRRMNEAGVLGRFIPDFGRIVAMMQFNMYHHYTVDEHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALY 534 (931)
T ss_pred CchHHHHHHHHHhCChHHhcccHHhcccccccccceeccHhHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHH
Confidence 5678899999999999999999999875 6 89999998777542 3445677889999
Q ss_pred HHHHhcccCCCCCCccccCCcc
Q 024381 238 FFEILSFLGYSRGQTDCSRGSL 259 (268)
Q Consensus 238 lA~LlHDIGKg~g~~h~~~g~~ 259 (268)
||+||||||||+++|||..|..
T Consensus 535 lAaLlHDIGKg~~~dHs~~Ga~ 556 (931)
T PRK05092 535 VAVLLHDIAKGRPEDHSIAGAR 556 (931)
T ss_pred HHHHHHHhhcCCCCCHHHHHHH
Confidence 9999999999999999999864
No 18
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=99.94 E-value=2.1e-26 Score=187.02 Aligned_cols=105 Identities=27% Similarity=0.355 Sum_probs=85.1
Q ss_pred CCCCCCCceEEEeCC-CHHHHHHHhcc--Cc--ccccccceEEEEeCCEEEEEecccccccccccCccccccCCCCCChh
Q 024381 1 MLNRIPKDFDIITSA-ELKEVVRVFSQ--CE--IVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEK 75 (268)
Q Consensus 1 llg~~~~D~Di~t~~-~~~~~~~~f~~--~~--~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~~~~~~~~e 75 (268)
|||++|+|+||+|++ .++.+.+++.. .. ..|+.|||+++..++..+||+++|+|.++.++..+. ....++++
T Consensus 30 Llg~~~~DiDi~v~~~~~~~~~~l~~~~~~~~v~~~~~f~t~~v~~~~~~~di~~~R~e~~~~~~~~p~---~~~~~~~~ 106 (139)
T cd05398 30 LLGRPPKDIDIATDADGPEFAEALFKKIGGRVVGLGEEFGTATVVINGLTIDVATLRTETYTDPGRRPP---VVGFTIEE 106 (139)
T ss_pred HcCCCCCCceEEEeCCCHHHHHHHHHhcCCcEEecCCcccEEEEEECCEEEEEcccccccccCCCCCCc---ccCCCCHH
Confidence 689999999999999 66666666642 22 345699999999999999999999998766533321 11346788
Q ss_pred hhHHhhhhccCCccccceeecCCCCeEeecCCCHHHHhc
Q 024381 76 DFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114 (268)
Q Consensus 76 DL~r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~ 114 (268)
||. |||||||||||++.+|.|+|||||++||++
T Consensus 107 Dl~------RRDFTINAmA~~~~~~~liDp~~G~~DL~~ 139 (139)
T cd05398 107 DLL------RRDFTINAMAYDLDDGELIDPFGGLKDLEN 139 (139)
T ss_pred HHh------hcCcchhheEecCCCCEEEeCCCCHHHHhC
Confidence 886 999999999999988899999999999985
No 19
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=2.2e-26 Score=234.27 Aligned_cols=151 Identities=14% Similarity=0.141 Sum_probs=129.4
Q ss_pred cCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHh-CCCCCHHHHHHHHHc----CccccCCCHHHHHHHHHHHH
Q 024381 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL-GFRFSRETAHFVKHL----SPSILKLDRGRLLMEMNYML 179 (268)
Q Consensus 105 p~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~-gf~i~~~t~~~i~~~----~~~l~~~~~eRi~~El~kiL 179 (268)
|.++...+.+|.|.+.++ ..|.+||+||||+|||++++ ||+|+++|+++|+++ ...+...+.+| .||.+||
T Consensus 319 ~i~~~f~~~~~~i~~~~~--~~f~~dp~riLr~fr~~a~~~~~~i~~~t~~~i~~~~~~~~~~l~~~~~eR--~ef~kiL 394 (854)
T PRK01759 319 PLDDDFYLINNAICLRNP--DCFEQQPESILDLFFYLTQYPQAEIHSTTLRQLRLALEQLQQPLCELPAAR--ERFLRLF 394 (854)
T ss_pred cCCCCeEEECCEEEecCh--hhhhhCHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHhccchhccCHHHH--HHHHHHH
Confidence 345667789999999876 89999999999999999999 699999999988755 34555567776 8999999
Q ss_pred hCCCH-HHHHHHHHHcCCchhhhhhhHHhHh--h-cCCccCchhHhHHH---------------------HHHhccCchh
Q 024381 180 AYGSA-EASLRLLWKFGLLEVLLPIQAAYLV--K-HGFRRRDKRSNLLL---------------------VISTYLLLII 234 (268)
Q Consensus 180 ~~~~~-~~~l~~m~~~glL~~llPe~~~~~~--q-~~yH~~d~~~~~l~---------------------~l~~~~~~~~ 234 (268)
.++++ ..+++.|+++|+|+.++|||+++.+ | +.||++|++.|++. +++.+++++.
T Consensus 395 ~~~~~~~~~l~~M~~~GvL~~~iPe~~~i~~~~Q~d~yH~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (854)
T PRK01759 395 NQPNAIKRALVPMHQYGVLTAYLPQWKGIVGLMQFDLFHIYTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRT 474 (854)
T ss_pred cCCCchHHHHHHHHHhCCHHHhChHHHheeeccCCcccccCcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHH
Confidence 98775 6899999999999999999999875 5 88999999887653 3445668899
Q ss_pred HHHHHHHhcccCCCCCCccccCCcc
Q 024381 235 TLFFFEILSFLGYSRGQTDCSRGSL 259 (268)
Q Consensus 235 ~L~lA~LlHDIGKg~g~~h~~~g~~ 259 (268)
+|+||+||||||||+++|||..|..
T Consensus 475 ~L~lAaLlHDIGKG~~~dHs~~Ga~ 499 (854)
T PRK01759 475 LLYIAALFHDIAKGRGGDHAELGAV 499 (854)
T ss_pred HHHHHHHHHhhcCCCCCChhHHHHH
Confidence 9999999999999999999999974
No 20
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-25 Score=220.31 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=137.9
Q ss_pred eecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCC-CHHHHHHHHHcCccccCC--CHHHHHHHHHHHH
Q 024381 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRF-SRETAHFVKHLSPSILKL--DRGRLLMEMNYML 179 (268)
Q Consensus 103 ~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i-~~~t~~~i~~~~~~l~~~--~~eRi~~El~kiL 179 (268)
..|.++-.-..+|.|.+.++ ..|+.||..|||.|-.+++.|... +++|+++++.+.+.|+.. ..++.+.-|..||
T Consensus 327 ~r~ld~~fv~~~g~I~l~~~--~~f~~dP~~ilrlf~~~~~~~~~~~~~~Tlr~L~~a~~~l~~~l~~~peA~~~Fl~il 404 (867)
T COG2844 327 KRPLDDDFVERNGRIELRDP--DLFERDPEAILRLFAIMAQTGLITGHPDTLRQLRRALRLLNQPLREDPEARRLFLSIL 404 (867)
T ss_pred cccCcccceeeCCEEEecCc--hhhhhChHHHHHHHHHHHhcCCcccchHHHHHHHHhccccCcccccCHHHHHHHHHHH
Confidence 46777788889999999887 789999999999999999999988 799999999998888875 4478888899999
Q ss_pred hCCCH-HHHHHHHHHcCCchhhhhhhHHhHh--h-cCCccCchhHh---------------------HHHHHHhccCchh
Q 024381 180 AYGSA-EASLRLLWKFGLLEVLLPIQAAYLV--K-HGFRRRDKRSN---------------------LLLVISTYLLLII 234 (268)
Q Consensus 180 ~~~~~-~~~l~~m~~~glL~~llPe~~~~~~--q-~~yH~~d~~~~---------------------~l~~l~~~~~~~~ 234 (268)
+.++. .++|+.|+++|+|+.++|||+++++ | |+||+|+|..| .++.+++.+++++
T Consensus 405 ~~~~~~~r~l~~Mn~~GVLgrylPew~~Ivg~MQfdlfH~YTVDeH~lr~v~~l~~~a~~~~~~~hPl~~~l~~~~~~~e 484 (867)
T COG2844 405 RSPNAIRRTLRPMNRYGVLGRYLPEWGKIVGLMQFDLFHIYTVDEHTLRVVLKLARFARGEARHEHPLASQLMPRLEKRE 484 (867)
T ss_pred hCCCcHHHHHHHHHHhhhHHHhcccHHhhhcccccCcceecchhHHHHHHHHHHHHhhcccccccCccHHhhccCCCChh
Confidence 87765 8999999999999999999999987 5 99999877544 3578888999999
Q ss_pred HHHHHHHhcccCCCCCCccccCCcc
Q 024381 235 TLFFFEILSFLGYSRGQTDCSRGSL 259 (268)
Q Consensus 235 ~L~lA~LlHDIGKg~g~~h~~~g~~ 259 (268)
+||+||||||||||||||||+.|-.
T Consensus 485 lLylAaLfHDIaKGRggDHs~lGA~ 509 (867)
T COG2844 485 LLYLAALFHDIAKGRGGDHSILGAE 509 (867)
T ss_pred HHHHHHHHHHhhcCCCCchHHhhHH
Confidence 9999999999999999999999953
No 21
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=3.7e-25 Score=226.05 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=127.5
Q ss_pred HHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhC--CCCCHHHHHHHHHcCccccCC--CHHHHHHHHHHHHhCCCHH
Q 024381 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLG--FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNYMLAYGSAE 185 (268)
Q Consensus 110 ~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~g--f~i~~~t~~~i~~~~~~l~~~--~~eRi~~El~kiL~~~~~~ 185 (268)
.-+.++.|+++++ ..|.+||+||||+|||+++.+ ..++++|+++|+++++.++.. ..++++.||.+||.++++.
T Consensus 348 f~~~~~~i~~~~~--~~f~~dp~~iLr~f~~aa~~~~i~~i~~~t~~~i~~~~~~i~~~~~~~~~~~~~f~~iL~~~~~~ 425 (884)
T PRK05007 348 FQLRGTLIDLRDE--TLFQRQPEAILRMFYLMARNSNITGIYSTTLRQLRHARRHLNQPLCEIPEARKLFMEILRHPGAV 425 (884)
T ss_pred eEEECCEEeecCh--hhhhhCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHcCCCch
Confidence 4578999999997 679999999999999999965 467799999999988877743 3567999999999998875
Q ss_pred -HHHHHHHHcCCchhhhhhhHHhHh--h-cCCccCchhHhHHH---------------------HHHhccCchhHHHHHH
Q 024381 186 -ASLRLLWKFGLLEVLLPIQAAYLV--K-HGFRRRDKRSNLLL---------------------VISTYLLLIITLFFFE 240 (268)
Q Consensus 186 -~~l~~m~~~glL~~llPe~~~~~~--q-~~yH~~d~~~~~l~---------------------~l~~~~~~~~~L~lA~ 240 (268)
.+++.|+++|+|+.++|||+.+.+ | +.||+++++.|++. +++.+++++.+|+||+
T Consensus 426 ~~~l~~m~~~GlL~~~iPe~~~i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAa 505 (884)
T PRK05007 426 SRALLPMHRHSVLSAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAA 505 (884)
T ss_pred HHHHHHHHHhCCHHHhCchHhheeeccccCccccCcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHH
Confidence 599999999999999999999865 6 88999999877543 3344567899999999
Q ss_pred HhcccCCCCCCccccCCcc
Q 024381 241 ILSFLGYSRGQTDCSRGSL 259 (268)
Q Consensus 241 LlHDIGKg~g~~h~~~g~~ 259 (268)
||||||||+++|||..|.-
T Consensus 506 LlHDIGKg~~~dHs~~Ga~ 524 (884)
T PRK05007 506 LFHDIAKGRGGDHSILGAQ 524 (884)
T ss_pred HHHhhcCCCCCChHHHHHH
Confidence 9999999999999999963
No 22
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=2.6e-24 Score=218.88 Aligned_cols=151 Identities=14% Similarity=0.094 Sum_probs=132.3
Q ss_pred CCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhC--CCCCHHHHHHHHHcCccccCC--CHHHHHHHHHHHHhCC
Q 024381 107 GGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLG--FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNYMLAYG 182 (268)
Q Consensus 107 ~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~g--f~i~~~t~~~i~~~~~~l~~~--~~eRi~~El~kiL~~~ 182 (268)
+...-+.+|.|.+.++ ..|.++|..|||+|..+++.+ ..|++.|++.++++...++.. ..+|++.||.+||.++
T Consensus 334 ~~~f~~~~~~i~~~~~--~~f~~~P~~il~lf~~~~~~~~~~~i~~~t~r~l~~~~~~l~~~~~~~~ri~~ef~kiL~~~ 411 (869)
T PRK04374 334 GGGFSLRRGYLAADAD--SWPDGDVLQVFALFAQWAAHREVRGLHSLTARALAEVLRDLPAYDVADATARERFMALLRGP 411 (869)
T ss_pred CCCeEEECCEEeecCc--ccchhCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHcCC
Confidence 4334477888887765 899999999999999999999 899999999999988777653 6789999999999999
Q ss_pred CHHHHHHHHHHcCCchhhhhhhHHhHh--h-cCCccCchhHhHHH---------------------HHHhccCchhHHHH
Q 024381 183 SAEASLRLLWKFGLLEVLLPIQAAYLV--K-HGFRRRDKRSNLLL---------------------VISTYLLLIITLFF 238 (268)
Q Consensus 183 ~~~~~l~~m~~~glL~~llPe~~~~~~--q-~~yH~~d~~~~~l~---------------------~l~~~~~~~~~L~l 238 (268)
++..+|+.|+++|+|+.++|||+++.+ | +.||++|++.|++. +++.++.++.+|+|
T Consensus 412 ~~~~~l~~m~~~GvL~~~lPE~~~i~~~~Q~d~yH~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~lL~l 491 (869)
T PRK04374 412 RAVETLNRMARLGVLGQWIPAFASVSGRMQFDLFHVYTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLL 491 (869)
T ss_pred ChhHHHHHHHHhCCHHHHhhhHHHHhccccccCccCCcHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCccHHHH
Confidence 998899999999999999999999975 6 89999999877643 45556677899999
Q ss_pred HHHhcccCCCCCCccccCCcc
Q 024381 239 FEILSFLGYSRGQTDCSRGSL 259 (268)
Q Consensus 239 A~LlHDIGKg~g~~h~~~g~~ 259 (268)
|+||||||||+++|||..|.-
T Consensus 492 AaLlHDIGKg~~~dHs~~Ga~ 512 (869)
T PRK04374 492 AGLFHDIAKGRGGDHSELGAV 512 (869)
T ss_pred HHHHHhccCCCCCChHHHhHH
Confidence 999999999999999999964
No 23
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=99.42 E-value=3e-13 Score=95.14 Aligned_cols=62 Identities=27% Similarity=0.456 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHH
Q 024381 145 GFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAA 206 (268)
Q Consensus 145 gf~i~~~t~~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~ 206 (268)
||+|+++|.++|+++++.|..+|+|||+.|+.|+|.++++..+++.|.++|++..+||++.+
T Consensus 1 gF~ie~~t~~ai~~~~~~L~~is~ERi~~El~kil~~~~~~~~~~~l~~~gll~~ifP~l~~ 62 (64)
T PF12627_consen 1 GFKIEPETEEAIKENAELLSKISKERIREELEKILSSPNPSRAFKLLDELGLLEYIFPELDA 62 (64)
T ss_dssp T-EE-HHHHHHHHHHGGGGGGS-HHHHHHHHHHHHTSTTHHHHHHHHHHTTCHHHHSTTHHT
T ss_pred CCccCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHCccccc
Confidence 79999999999999999999999999999999999999999999999999999999999865
No 24
>PHA01806 hypothetical protein
Probab=99.36 E-value=1.4e-12 Score=109.20 Aligned_cols=80 Identities=23% Similarity=0.174 Sum_probs=54.0
Q ss_pred CCCCCCCceEEEeC-CCHHHHHHHhccC----cccccccceEE---------------------EEeCCEEEEEeccccc
Q 024381 1 MLNRIPKDFDIITS-AELKEVVRVFSQC----EIVGKRFPICH---------------------VHFENTIVEVSSFSTS 54 (268)
Q Consensus 1 llg~~~~D~Di~t~-~~~~~~~~~f~~~----~~~g~~f~~~~---------------------v~~~~~~~ev~~~r~~ 54 (268)
|||++|+|+||+|. +.|+++.++..+. .....+.|.++ +..++..+|++.++++
T Consensus 49 Llgr~~kDiDivt~~~~pe~v~~L~~klG~k~V~~~~~~ggwr~~~~~~gd~~~~~~~~~l~g~~vl~g~tvD~A~~~g~ 128 (200)
T PHA01806 49 MHGAEPKDIDIALYGMDDRQAELLIGCILPKLVSRFLRDGGWSQEYHDGGDGGIFKGVVSLKGCRGLEGMDVDFNYYDTD 128 (200)
T ss_pred HcCCCCCceEEEccCCCHHHHHHHHHHhCCcccccccccceeeeeccccccccccccceeeeeeEEeCCeEEEeeeccCC
Confidence 58999999999994 6788877665421 12222333444 3346677777766543
Q ss_pred ccccccCccccccCCCCCChhhhHHhhhhccCCcccc--ceeecCCCCeEeecCCC
Q 024381 55 GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTIN--GLMFDPYAKIIYDYIGG 108 (268)
Q Consensus 55 ~~~~~~~~~~d~~~~~~~~~eDL~r~~d~~rRDFTIN--Ama~~~~~~~l~Dp~~G 108 (268)
++++||. ||||||| ||||++. ||-||
T Consensus 129 -----------------sleeDL~------rRDFTINq~AIA~~~~-----~~~~~ 156 (200)
T PHA01806 129 -----------------SVGEVME------SFDYTINQVGIAYNWP-----DPEGG 156 (200)
T ss_pred -----------------CHHHHHH------HcCCccchhhhcccCC-----CCCCC
Confidence 4789996 9999999 7777753 55555
No 25
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=96.18 E-value=0.0011 Score=50.65 Aligned_cols=21 Identities=14% Similarity=-0.085 Sum_probs=18.3
Q ss_pred chhHHHHHHHhcccCCCCCCc
Q 024381 232 LIITLFFFEILSFLGYSRGQT 252 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g~~ 252 (268)
...++.+|+|||||||....+
T Consensus 24 ~~~~l~~aaLlHDiGk~~~~~ 44 (122)
T PF01966_consen 24 DRELLRIAALLHDIGKIPTPD 44 (122)
T ss_dssp HHHHHHHHHHHTTTTHHSTHH
T ss_pred hHHHHHHHHHHHhcCCCCCch
Confidence 677899999999999998654
No 26
>PRK12704 phosphodiesterase; Provisional
Probab=95.93 E-value=0.021 Score=56.00 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=21.1
Q ss_pred chhHHHHHHHhcccCCCC----CCccccCCc
Q 024381 232 LIITLFFFEILSFLGYSR----GQTDCSRGS 258 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~----g~~h~~~g~ 258 (268)
++..++.|+|||||||.. +++|+..|.
T Consensus 357 d~~~a~~AgLLHDIGK~~~~e~~~~H~~iGa 387 (520)
T PRK12704 357 DVKLAKRAGLLHDIGKALDHEVEGSHVEIGA 387 (520)
T ss_pred CHHHHHHHHHHHccCcCccccccCCHHHHHH
Confidence 577799999999999973 446766664
No 27
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=95.66 E-value=0.0043 Score=44.08 Aligned_cols=27 Identities=11% Similarity=-0.030 Sum_probs=20.2
Q ss_pred chhHHHHHHHhcccCCCCC------CccccCCc
Q 024381 232 LIITLFFFEILSFLGYSRG------QTDCSRGS 258 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g------~~h~~~g~ 258 (268)
++..+++|+|||||||... .+|+..|.
T Consensus 26 ~~~~l~~AalLHDiG~~~~~~~~~~~~H~~~g~ 58 (80)
T TIGR00277 26 DVELARRGALLHDIGKPITREGVIFESHAVVGA 58 (80)
T ss_pred CHHHHHHHHHHHccCCcccchHHHHHchHHHHH
Confidence 3456999999999999864 45665553
No 28
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=95.30 E-value=0.003 Score=48.64 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=15.8
Q ss_pred chhHHHHHHHhcccCCCC
Q 024381 232 LIITLFFFEILSFLGYSR 249 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~ 249 (268)
++..+++|+|||||||..
T Consensus 27 ~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 27 DIELLRLAALLHDIGKPG 44 (145)
T ss_pred HHHHHHHHHHHHhcCCcc
Confidence 467899999999999974
No 29
>PRK00106 hypothetical protein; Provisional
Probab=94.98 E-value=0.12 Score=50.79 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHhhcCCcc-C--chhHh
Q 024381 145 GFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRR-R--DKRSN 221 (268)
Q Consensus 145 gf~i~~~t~~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~q~~yH~-~--d~~~~ 221 (268)
+-.|+|...+-+-+ ....|+.+.+.. .+=+.+.++|+.. +=|++-.+++.=.|.. + ..|.|
T Consensus 291 dgrIhp~rIEe~v~-----------k~~~e~~~~i~~----~Ge~a~~~lg~~~-~~~e~~~~lg~l~~r~sy~qnl~~H 354 (535)
T PRK00106 291 DGRIHPARIEELVE-----------KNRLEMDNRIRE----YGEAAAYEIGAPN-LHPDLIKIMGRLQFRTSYGQNVLRH 354 (535)
T ss_pred cCCcCHHHHHHHHH-----------HHHHHHHHHHHH----HHHHHHHHcCCCC-CCHHHHHHHHHHhhhccCCCcHHHH
Confidence 44577766555433 244555443321 1234455667653 4566666555311111 1 23444
Q ss_pred HH-----H-HHHhccC-chhHHHHHHHhcccCCCC----CCccccCCc
Q 024381 222 LL-----L-VISTYLL-LIITLFFFEILSFLGYSR----GQTDCSRGS 258 (268)
Q Consensus 222 ~l-----~-~l~~~~~-~~~~L~lA~LlHDIGKg~----g~~h~~~g~ 258 (268)
.+ + .++..+. ++..++.|+|||||||.- .++|+..|.
T Consensus 355 Sv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~~e~~g~Ha~iGa 402 (535)
T PRK00106 355 SVEVGKLAGILAGELGENVALARRAGFLHDMGKAIDREVEGSHVEIGM 402 (535)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccCccccCChHHHHH
Confidence 32 2 2222222 678899999999999983 235666554
No 30
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.93 E-value=0.072 Score=52.30 Aligned_cols=27 Identities=11% Similarity=-0.010 Sum_probs=21.5
Q ss_pred chhHHHHHHHhcccCCCC----CCccccCCc
Q 024381 232 LIITLFFFEILSFLGYSR----GQTDCSRGS 258 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~----g~~h~~~g~ 258 (268)
++..++.|+|||||||.- .++|+..|.
T Consensus 351 d~~~a~~AGLLHDIGK~~~~e~~~~H~~~Ga 381 (514)
T TIGR03319 351 DVKLAKRAGLLHDIGKAVDHEVEGSHVEIGA 381 (514)
T ss_pred CHHHHHHHHHHHhcCcccchhhcccHHHHHH
Confidence 567899999999999972 456777774
No 31
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=94.77 E-value=0.012 Score=44.32 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=16.6
Q ss_pred chhHHHHHHHhcccCCCCC
Q 024381 232 LIITLFFFEILSFLGYSRG 250 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g 250 (268)
++..+++|+|||||||...
T Consensus 27 ~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 27 DIELLLLAALLHDIGKPGT 45 (124)
T ss_pred HHHHHHHHHHHHcccCccC
Confidence 4677999999999999875
No 32
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=94.71 E-value=0.077 Score=48.83 Aligned_cols=17 Identities=29% Similarity=-0.007 Sum_probs=15.2
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
++++|..++|||||||-
T Consensus 182 n~dll~agalLHDiGKi 198 (314)
T PRK13480 182 NKDLLYAGIILHDLGKV 198 (314)
T ss_pred CHHHHHHHHHHHHhhhH
Confidence 57889999999999994
No 33
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=94.63 E-value=0.022 Score=47.39 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=22.0
Q ss_pred chhHHHHHHHhcccCCCCC--CccccCCc
Q 024381 232 LIITLFFFEILSFLGYSRG--QTDCSRGS 258 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g--~~h~~~g~ 258 (268)
++..++.|+|||||||... .+|+..|.
T Consensus 40 d~~~l~~aaLLHDIGK~~~~~~~H~~~G~ 68 (164)
T TIGR00295 40 DMDLVLKGALLHDIGRARTHGFEHFVKGA 68 (164)
T ss_pred CHHHHHHHHHHhcCCcccCCCCCHHHHHH
Confidence 5778999999999999753 47877775
No 34
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=94.33 E-value=0.016 Score=50.68 Aligned_cols=35 Identities=11% Similarity=-0.070 Sum_probs=24.5
Q ss_pred HHHHhccC-chhHHHHHHHhcccCCCCCCc----cccCCc
Q 024381 224 LVISTYLL-LIITLFFFEILSFLGYSRGQT----DCSRGS 258 (268)
Q Consensus 224 ~~l~~~~~-~~~~L~lA~LlHDIGKg~g~~----h~~~g~ 258 (268)
..+..+.. ++.++.-|+|||||||+...+ |+..|.
T Consensus 49 ~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~~~~~~h~~~ga 88 (222)
T COG1418 49 YRIAEEEGVDPDLALRAALLHDIGKAIDHEPGGSHAEIGA 88 (222)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhccccccCCccchHHHHH
Confidence 33444322 789999999999999986433 666554
No 35
>PRK12705 hypothetical protein; Provisional
Probab=94.09 E-value=0.051 Score=53.07 Aligned_cols=27 Identities=15% Similarity=-0.057 Sum_probs=21.1
Q ss_pred chhHHHHHHHhcccCCCC----CCccccCCc
Q 024381 232 LIITLFFFEILSFLGYSR----GQTDCSRGS 258 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~----g~~h~~~g~ 258 (268)
++..++.|+|||||||.- +++|+..|.
T Consensus 345 d~d~a~~AGLLHDIGK~ie~e~~~~H~~iGa 375 (508)
T PRK12705 345 DPALAKRAGLLHDIGKSIDRESDGNHVEIGA 375 (508)
T ss_pred CHHHHHHHHHHHHcCCcchhhhcccHHHHHH
Confidence 567789999999999973 456776664
No 36
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=91.69 E-value=0.099 Score=43.13 Aligned_cols=17 Identities=24% Similarity=0.172 Sum_probs=14.9
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
-+.++.+|+++|||||.
T Consensus 30 ~~~~~~~~~~lHDiGK~ 46 (177)
T TIGR01596 30 LRELLDLLALLHDIGKI 46 (177)
T ss_pred HHHHHHHHHHHccCccC
Confidence 36789999999999995
No 37
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=91.52 E-value=0.38 Score=44.71 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=21.0
Q ss_pred chhHHHHHHHhcccCCCCCC--ccccCCc
Q 024381 232 LIITLFFFEILSFLGYSRGQ--TDCSRGS 258 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g~--~h~~~g~ 258 (268)
+..++..|||||||||.... +|...|.
T Consensus 209 D~~ll~aAALLHDIGK~k~~~~~H~~~Ga 237 (339)
T PRK12703 209 DRRLVAAGALLHDIGRTKTNGIDHAVAGA 237 (339)
T ss_pred CHHHHHHHHHHHhcccccccCCCHHHHHH
Confidence 56778899999999998653 5776664
No 38
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=91.50 E-value=0.36 Score=44.86 Aligned_cols=17 Identities=0% Similarity=-0.091 Sum_probs=15.1
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
++..+++|+|||||||-
T Consensus 218 d~~~a~~AGLLHDIGK~ 234 (342)
T PRK07152 218 DPKKAYYAGLYHDITKE 234 (342)
T ss_pred CHHHHHHHHHHHHhhcc
Confidence 45889999999999995
No 39
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=90.87 E-value=0.1 Score=42.97 Aligned_cols=17 Identities=6% Similarity=-0.406 Sum_probs=15.0
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
+++..++|+|||||||-
T Consensus 30 d~e~a~~AGLLHDIGk~ 46 (158)
T TIGR00488 30 DSKKAEIAGAYHDLAKF 46 (158)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 46789999999999994
No 40
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=88.84 E-value=0.22 Score=43.79 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=15.2
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
++++|++|+||||||+.
T Consensus 81 D~evl~lAALLHDIG~~ 97 (228)
T TIGR03401 81 SDETWFLTCLLHDIGTT 97 (228)
T ss_pred CHHHHHHHHHHHhhccc
Confidence 57889999999999984
No 41
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=88.61 E-value=0.25 Score=40.89 Aligned_cols=40 Identities=15% Similarity=-0.003 Sum_probs=28.2
Q ss_pred HHHHHHhccCchhHHHHHHHhcccCCCC----CCccccCCcccc
Q 024381 222 LLLVISTYLLLIITLFFFEILSFLGYSR----GQTDCSRGSLYP 261 (268)
Q Consensus 222 ~l~~l~~~~~~~~~L~lA~LlHDIGKg~----g~~h~~~g~~~~ 261 (268)
+...+-++-++..+|+|++|.||+||-- -.--...|-.+|
T Consensus 104 tAE~iR~~~Pd~dWlHLtaLiHDLGKvl~f~GepQWAVvGDTfp 147 (204)
T KOG1573|consen 104 TAEAIRKDYPDEDWLHLTALIHDLGKVLAFGGEPQWAVVGDTFP 147 (204)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHhcCCcceeeecCccc
Confidence 4456667778899999999999999952 223344555555
No 42
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=88.44 E-value=0.53 Score=47.20 Aligned_cols=39 Identities=8% Similarity=-0.087 Sum_probs=24.7
Q ss_pred cCCccCchhHhHHHHHHhccC-chhHHHHHHHhcccCCCC
Q 024381 211 HGFRRRDKRSNLLLVISTYLL-LIITLFFFEILSFLGYSR 249 (268)
Q Consensus 211 ~~yH~~d~~~~~l~~l~~~~~-~~~~L~lA~LlHDIGKg~ 249 (268)
..|||.=.-.++....+..+. +..+.|.|+..|||||=.
T Consensus 489 GTy~HSvmVAnLAEaAa~~IGan~lLaRVgayYHDIGK~~ 528 (700)
T COG1480 489 GTYQHSVMVANLAEAAAEEIGANSLLARVGAYYHDIGKMK 528 (700)
T ss_pred CCccchhhHHHHHHHHHHHhCCchHHHHHHHHHhhccccc
Confidence 345542212233344444554 788999999999999973
No 43
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=88.26 E-value=0.24 Score=46.05 Aligned_cols=18 Identities=22% Similarity=0.074 Sum_probs=14.9
Q ss_pred hhHHHHHHHhcccCCCCC
Q 024381 233 IITLFFFEILSFLGYSRG 250 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg~g 250 (268)
-..|++|+|||||||-.-
T Consensus 174 i~~l~~aalLHDIGKi~i 191 (344)
T COG2206 174 IEELALAGLLHDIGKIGI 191 (344)
T ss_pred HHHHHHHHHHhhcccccC
Confidence 356999999999999544
No 44
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=86.95 E-value=0.3 Score=42.66 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.9
Q ss_pred hHHHHHHHhcccCCC
Q 024381 234 ITLFFFEILSFLGYS 248 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg 248 (268)
.++++|+|||||||.
T Consensus 106 ~~~~~aaLlHDlgK~ 120 (218)
T TIGR03760 106 AAVFYAALLHDLGKL 120 (218)
T ss_pred HHHHHHHHHHhhhhh
Confidence 489999999999997
No 45
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=86.85 E-value=0.99 Score=43.28 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCchhhhhhhHHhHh--h-cCCccCchhHhHHHHHHhccC----------chhHHHHHHHhcccCCCC
Q 024381 184 AEASLRLLWKFGLLEVLLPIQAAYLV--K-HGFRRRDKRSNLLLVISTYLL----------LIITLFFFEILSFLGYSR 249 (268)
Q Consensus 184 ~~~~l~~m~~~glL~~llPe~~~~~~--q-~~yH~~d~~~~~l~~l~~~~~----------~~~~L~lA~LlHDIGKg~ 249 (268)
+.+=|+...++|+-..++|....-.. . ..| ++...+...+. ...++.+||||||||-|.
T Consensus 28 ~FQRLRrIkQLG~a~lvyPgAnHTRFeHSLGV~-------~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIGHgP 99 (421)
T COG1078 28 EFQRLRRIKQLGLAYLVYPGANHTRFEHSLGVY-------HLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIGHGP 99 (421)
T ss_pred HHHHHHHhhhccceeEecCCCcccccchhhHHH-------HHHHHHHHHHhhccccccchHHHHHHHHHHHHHccCCCc
Confidence 55667777788877777776432100 0 122 22233333222 233799999999999765
No 46
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=83.38 E-value=3.7 Score=37.30 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=24.3
Q ss_pred chhHHHHHHHhcccCCCCCCcc------ccCCcccccccc
Q 024381 232 LIITLFFFEILSFLGYSRGQTD------CSRGSLYPCLSF 265 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g~~h------~~~g~~~~~~~~ 265 (268)
+.++++-+++|||+||+.+-+- +.+|-+++-+++
T Consensus 164 n~dli~Ag~ilHdigK~~el~~~~~~~yt~~g~ligHia~ 203 (287)
T COG3481 164 NRELIYAGAILHDIGKVLELTGPEATEYTVRGNLIGHIAL 203 (287)
T ss_pred cHHHHHHHHHHhcccccccCCCcccccceeccceeEEEEe
Confidence 6789999999999999975432 334656555443
No 47
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=81.93 E-value=1.4 Score=37.27 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=20.4
Q ss_pred chhHhHHHH--HHhccCchhHHHHHHHhcccCCC
Q 024381 217 DKRSNLLLV--ISTYLLLIITLFFFEILSFLGYS 248 (268)
Q Consensus 217 d~~~~~l~~--l~~~~~~~~~L~lA~LlHDIGKg 248 (268)
+...|.++. ++.+-..++.+-.|+||||||.-
T Consensus 25 s~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhl 58 (179)
T TIGR03276 25 SQLEHALQCAQLAEAAGADDELIVAAFLHDIGHL 58 (179)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchh
Confidence 334555543 23333346678899999999863
No 48
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=80.90 E-value=1.8 Score=38.23 Aligned_cols=38 Identities=13% Similarity=-0.017 Sum_probs=23.6
Q ss_pred HHHHhccCchhHHHHHHHhcccCC-----CCCCccccCCcccc
Q 024381 224 LVISTYLLLIITLFFFEILSFLGY-----SRGQTDCSRGSLYP 261 (268)
Q Consensus 224 ~~l~~~~~~~~~L~lA~LlHDIGK-----g~g~~h~~~g~~~~ 261 (268)
..+-+.-++|.++.|.+|+||+|| |..+--+..|..+|
T Consensus 72 EaiR~d~~~~dW~~LtGLiHDLGKvl~~~~~e~QW~vvGDTfp 114 (253)
T PF05153_consen 72 EAIRRDHPDPDWMQLTGLIHDLGKVLALFGGEPQWAVVGDTFP 114 (253)
T ss_dssp HHHHHHSTT-HHHHHHHHHTTGGGHHHHC-T--GGGTSS---B
T ss_pred HHHHHhCCCcchhhheehhccchhhhhhhcCCCCceeecCcee
Confidence 333333378999999999999999 34556777787777
No 49
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=80.64 E-value=0.86 Score=42.22 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.2
Q ss_pred hHHHHHHHhcccCCC
Q 024381 234 ITLFFFEILSFLGYS 248 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg 248 (268)
-.+++|+|||||||.
T Consensus 105 ~avf~AALlhdlgk~ 119 (327)
T PF07514_consen 105 YAVFYAALLHDLGKP 119 (327)
T ss_pred HHHHHHHHHhccCcc
Confidence 368999999999994
No 50
>PRK10119 putative hydrolase; Provisional
Probab=77.60 E-value=1.5 Score=38.68 Aligned_cols=16 Identities=0% Similarity=-0.168 Sum_probs=14.0
Q ss_pred chhHHHHHHHhcccCC
Q 024381 232 LIITLFFFEILSFLGY 247 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGK 247 (268)
+..++.+|||||||+-
T Consensus 47 D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 47 DMLVVLTACYFHDIVS 62 (231)
T ss_pred CHHHHHHHHHHhhcch
Confidence 6778999999999974
No 51
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=76.18 E-value=1.1 Score=41.82 Aligned_cols=21 Identities=10% Similarity=-0.154 Sum_probs=16.9
Q ss_pred hhHHHHHHHhcccCCCCCCcc
Q 024381 233 IITLFFFEILSFLGYSRGQTD 253 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg~g~~h 253 (268)
-..+++|+.||||||-.=.|+
T Consensus 211 v~~i~~AapLHDIGKvaiPD~ 231 (360)
T COG3437 211 VDLIKKAAPLHDIGKVAIPDS 231 (360)
T ss_pred HHHHHhccchhhcccccCChH
Confidence 456999999999999765554
No 52
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=71.68 E-value=3.1 Score=34.65 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=24.7
Q ss_pred HHHhccCchhHHHHHHHhcccCCCC---CCccccCCcccc
Q 024381 225 VISTYLLLIITLFFFEILSFLGYSR---GQTDCSRGSLYP 261 (268)
Q Consensus 225 ~l~~~~~~~~~L~lA~LlHDIGKg~---g~~h~~~g~~~~ 261 (268)
.++.+--.+..|--|+||||||-=. |.+-+..|+.-|
T Consensus 40 tlAerdGa~~~lVaaALLHDiGhl~~~~g~~ps~~~i~d~ 79 (186)
T COG4341 40 TLAERDGADTALVAAALLHDIGHLYADYGHTPSAAGIDDP 79 (186)
T ss_pred HHHHhcCCcHHHHHHHHHHhHHHHhhhcCCCccccccchh
Confidence 4444445677888999999999532 445666666544
No 53
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=70.67 E-value=2.3 Score=40.58 Aligned_cols=26 Identities=15% Similarity=0.177 Sum_probs=17.9
Q ss_pred HHHHHHHhcccCCCCCCccccCCcccc
Q 024381 235 TLFFFEILSFLGYSRGQTDCSRGSLYP 261 (268)
Q Consensus 235 ~L~lA~LlHDIGKg~g~~h~~~g~~~~ 261 (268)
.+.+|+||||||-|.= +|---|.-.|
T Consensus 109 ~vqvA~LLHDIGHGPf-SHmFe~~f~~ 134 (498)
T KOG2681|consen 109 AVQVAALLHDIGHGPF-SHLFEGEFTP 134 (498)
T ss_pred HHHHHHHHhhcCCCch-hhhhhheecc
Confidence 4789999999998753 4544444333
No 54
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=67.19 E-value=2 Score=36.07 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.5
Q ss_pred chhHHHHHHHhcccCC
Q 024381 232 LIITLFFFEILSFLGY 247 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGK 247 (268)
.++..|+|+|||||||
T Consensus 117 ~~~~a~~~gLL~~iG~ 132 (196)
T PF08668_consen 117 DPDEAYLAGLLHDIGK 132 (196)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHhH
Confidence 4689999999999997
No 55
>COG2254 Predicted HD superfamily hydrolase, possibly a nuclease [DNA replication, recombination, and repair]
Probab=64.57 E-value=1.8 Score=38.02 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=17.5
Q ss_pred hhHHHHHHHhcccCCCCCCccccC
Q 024381 233 IITLFFFEILSFLGYSRGQTDCSR 256 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg~g~~h~~~ 256 (268)
.+++.+|..||||||+-..=++..
T Consensus 51 ~~~vk~AiilHDiGKa~~~yQ~~~ 74 (230)
T COG2254 51 EELVKLAIILHDIGKASEAYQKGR 74 (230)
T ss_pred HHHHHHeeEEeechhhHHHHHHhc
Confidence 456889999999999854433333
No 56
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=62.17 E-value=4.4 Score=42.21 Aligned_cols=15 Identities=27% Similarity=0.056 Sum_probs=13.2
Q ss_pred HHHHHHhcccCCCCC
Q 024381 236 LFFFEILSFLGYSRG 250 (268)
Q Consensus 236 L~lA~LlHDIGKg~g 250 (268)
+++|+|+||+||...
T Consensus 703 ~~laGllHDlGK~~~ 717 (844)
T TIGR02621 703 VRQAARLHDLGKQRP 717 (844)
T ss_pred HHHHHHhcccccCCH
Confidence 689999999999763
No 57
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=62.13 E-value=6.6 Score=38.43 Aligned_cols=19 Identities=21% Similarity=-0.066 Sum_probs=16.0
Q ss_pred chhHHHHHHHhcccCCCCC
Q 024381 232 LIITLFFFEILSFLGYSRG 250 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g 250 (268)
...+|.+|++|||||+--+
T Consensus 351 ~~~LL~~Aa~LhdiG~~I~ 369 (496)
T PRK11031 351 SRELLISACQLHEIGLSVD 369 (496)
T ss_pred HHHHHHHHHHHHhcCCccC
Confidence 3568999999999999753
No 58
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=61.48 E-value=3.2 Score=35.34 Aligned_cols=20 Identities=10% Similarity=-0.061 Sum_probs=15.7
Q ss_pred chhHHHHHHHhcccCCCCCC
Q 024381 232 LIITLFFFEILSFLGYSRGQ 251 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g~ 251 (268)
++.-.++|+++||++|-...
T Consensus 39 d~~kA~~AgilHD~aK~~p~ 58 (187)
T COG1713 39 DPEKAYLAGILHDIAKELPE 58 (187)
T ss_pred CHHHHHHHHHHHHHHhhCCH
Confidence 45559999999999996543
No 59
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=58.14 E-value=5.1 Score=42.60 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=13.1
Q ss_pred hHHHHHHHhcccCCCC
Q 024381 234 ITLFFFEILSFLGYSR 249 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg~ 249 (268)
.+.-+|+||||+||..
T Consensus 114 lLa~~AgL~HD~GKA~ 129 (1110)
T TIGR02562 114 LLAGLAGLLHDIGKAS 129 (1110)
T ss_pred HHHHHHHHhhccccch
Confidence 3566999999999963
No 60
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily. The Pol beta-like NT superfamily includes DNA polymerase beta and other family X DNA Polymerases, as well as Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly(A) polymerases, terminal uridylyl transferases, Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. Proteins belonging to this subgroup are uncharacterized. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations essential for catalysis. These divalent metal ions are involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.
Probab=56.72 E-value=33 Score=28.37 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=28.4
Q ss_pred CCCCceEEEeCC-CHHHHHHHhccCc--c--------cccccceEEEEeCCEEEEEe
Q 024381 4 RIPKDFDIITSA-ELKEVVRVFSQCE--I--------VGKRFPICHVHFENTIVEVS 49 (268)
Q Consensus 4 ~~~~D~Di~t~~-~~~~~~~~f~~~~--~--------~g~~f~~~~v~~~~~~~ev~ 49 (268)
..|+||||-|+- +.+++..+|.... + +-+.|+- +.++|..+||.
T Consensus 35 ~~p~DIDI~~D~~d~e~i~~il~~~~~~~~~~~~~~~~ts~F~e--~~I~gv~Vdvm 89 (156)
T cd07749 35 VEPHDIDIQTDNEGAYEIERIFHEFVNTEVRFSESEGIRSHFGE--LQIDGIKVEIM 89 (156)
T ss_pred CCCCcceEEEchhhHHHHHHHHHHhccCCCccCCCCceeeeeeE--EEECCEEEEEe
Confidence 469999999875 6788887776431 1 1123443 34577778876
No 61
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=47.82 E-value=23 Score=32.94 Aligned_cols=23 Identities=9% Similarity=-0.281 Sum_probs=17.2
Q ss_pred chhHHHHHHHhcccCCCCCCcccc
Q 024381 232 LIITLFFFEILSFLGYSRGQTDCS 255 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g~~h~~ 255 (268)
+..++..|+|+||||-|.= +|+.
T Consensus 84 ~~~l~~aaaL~HDiGh~Pf-gH~g 106 (336)
T PRK01286 84 NEDLTEAIALGHDLGHTPF-GHAG 106 (336)
T ss_pred CHHHHHHHHHHhcCCCCCC-cchH
Confidence 4677888999999998753 4443
No 62
>PRK10854 exopolyphosphatase; Provisional
Probab=45.77 E-value=12 Score=36.87 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=15.9
Q ss_pred hhHHHHHHHhcccCCCCCC
Q 024381 233 IITLFFFEILSFLGYSRGQ 251 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg~g~ 251 (268)
..+|.+|++|||||+--+.
T Consensus 360 ~~LL~~Aa~LhdiG~~I~~ 378 (513)
T PRK10854 360 EALLKWAAMLHEVGLNINH 378 (513)
T ss_pred HHHHHHHHHHHhcCCccCC
Confidence 5689999999999987543
No 63
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=45.30 E-value=15 Score=34.84 Aligned_cols=18 Identities=6% Similarity=-0.230 Sum_probs=15.6
Q ss_pred chhHHHHHHHhcccCCCC
Q 024381 232 LIITLFFFEILSFLGYSR 249 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~ 249 (268)
+..++..|+|+||||-|.
T Consensus 71 ~~~l~~~a~L~HDiGhpP 88 (381)
T TIGR01353 71 FERLAETACLAHDIGNPP 88 (381)
T ss_pred cHHHHHHHHHHhcCCCCC
Confidence 567899999999999875
No 64
>TIGR03836 termin_org_HMW1 cytadherence high molecular weight protein 1 N-terminal region. This model describes the N-terminal region of the Mycoplasma cytadherence protein HMW1, up to but not including the first EAGR box domain. The apparent orthologs in different Mycoplasma species differ profoundly in archictecture C-terminally to the region described here.
Probab=38.25 E-value=23 Score=25.27 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=14.7
Q ss_pred eeecCCCCeEeecCCCH
Q 024381 93 LMFDPYAKIIYDYIGGI 109 (268)
Q Consensus 93 ma~~~~~~~l~Dp~~G~ 109 (268)
|||++.+|..+||+|.-
T Consensus 47 Iafn~EtgvyydPYgdt 63 (82)
T TIGR03836 47 IAFNPETGVYYDPYGDT 63 (82)
T ss_pred EEecCCCceEecCCCcc
Confidence 68899999999999943
No 65
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=37.77 E-value=19 Score=31.80 Aligned_cols=22 Identities=18% Similarity=0.153 Sum_probs=17.6
Q ss_pred chhHHHHHHHhcccCCCCCCcc
Q 024381 232 LIITLFFFEILSFLGYSRGQTD 253 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g~~h 253 (268)
.+.+..+|+.|||||-.--+||
T Consensus 96 ~~vivlLga~LHDIGnsVHRd~ 117 (269)
T COG3294 96 SPVIVLLGAYLHDIGNSVHRDD 117 (269)
T ss_pred hhHHHHHHHHHHhccchhcccc
Confidence 5778889999999998755443
No 66
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms]
Probab=37.48 E-value=38 Score=34.67 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCchhh-hh--hhHHhH--hhcCCc-c--CchhHhH---------------HHHHHhccCchhHHHHHHH
Q 024381 185 EASLRLLWKFGLLEVL-LP--IQAAYL--VKHGFR-R--RDKRSNL---------------LLVISTYLLLIITLFFFEI 241 (268)
Q Consensus 185 ~~~l~~m~~~glL~~l-lP--e~~~~~--~q~~yH-~--~d~~~~~---------------l~~l~~~~~~~~~L~lA~L 241 (268)
..++.+.++.|+...+ || -+.+.+ .+..|| . |-.|.|. +...+..+ ...++.+|++
T Consensus 391 ~~~~~mf~~l~lv~~f~I~~~tL~r~lltV~k~Yr~~v~YHNw~HAf~VaQ~m~~lL~t~~L~~~fTdl-EiLalliAal 469 (707)
T KOG3689|consen 391 KCTFRMFQDLGLVKKFKIDVETLCRFLLTVEKNYRSNVPYHNWRHAFDVAQAMFALLKTPKLQNKFTDL-EILALLIAAL 469 (707)
T ss_pred HHHHHHHHHcCcceeeccCHHHHHHHHhhhhhccccCCcchhHHHHHHHHHHHHHHHhchhHHhhcChH-HHHHHHHHHH
Confidence 4578888899998766 44 344433 246777 3 2223221 12222222 2456889999
Q ss_pred hcccCC
Q 024381 242 LSFLGY 247 (268)
Q Consensus 242 lHDIGK 247 (268)
.|||.-
T Consensus 470 cHDlDH 475 (707)
T KOG3689|consen 470 CHDLDH 475 (707)
T ss_pred HccCCC
Confidence 999985
No 67
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.96 E-value=1.6e+02 Score=24.30 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=42.7
Q ss_pred HHHHHhCCCCCHHHHHHHHHcCccccCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHcCCchhh
Q 024381 139 RIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA---YGSAEASLRLLWKFGLLEVL 200 (268)
Q Consensus 139 Rfaa~~gf~i~~~t~~~i~~~~~~l~~~~~eRi~~El~kiL~---~~~~~~~l~~m~~~glL~~l 200 (268)
.+..+.|+.+.+.-...+.-....=..++.+.|...+.+... -....+.|++|.+.|++..+
T Consensus 15 ~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 15 KLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 334566998887655555433333245799999999876532 12337999999999999887
No 68
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=35.83 E-value=1.5e+02 Score=22.17 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=27.6
Q ss_pred CCCCCceEEEeCCC-----HHHHH----HHhccCc-------ccccccceEEEEeC--CEEEEEec
Q 024381 3 NRIPKDFDIITSAE-----LKEVV----RVFSQCE-------IVGKRFPICHVHFE--NTIVEVSS 50 (268)
Q Consensus 3 g~~~~D~Di~t~~~-----~~~~~----~~f~~~~-------~~g~~f~~~~v~~~--~~~~ev~~ 50 (268)
+.+..|+|+++..+ ..++. +.+.+.. ....+-|++++... |..+|++-
T Consensus 33 ~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~~ArVPiik~~~~~~~i~~Dis~ 98 (114)
T cd05402 33 GLPGSDIDLCLLGPNHRVDREDFLRKLAKLLKKSGEVVEVEPIINARVPIIKFVDKPTGIEVDISF 98 (114)
T ss_pred CCCCCCeeEEEEeCCCCccHHHHHHHHHHHHHhCCCceeeEEeccCCCCEEEEEEcCCCeEEEEEc
Confidence 45678999987554 23333 3333221 23455677776665 77777763
No 69
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=33.96 E-value=34 Score=28.78 Aligned_cols=16 Identities=25% Similarity=0.748 Sum_probs=11.6
Q ss_pred ceeecCCCCe--EeecCC
Q 024381 92 GLMFDPYAKI--IYDYIG 107 (268)
Q Consensus 92 Ama~~~~~~~--l~Dp~~ 107 (268)
|||+||...+ +.||||
T Consensus 38 A~Aw~P~s~t~YmFDPfG 55 (183)
T PF00770_consen 38 AFAWDPRSRTFYMFDPFG 55 (183)
T ss_dssp EEEEETTTTEEEEE-TT-
T ss_pred EEEecCCcceEEEeCCCC
Confidence 7899998765 679998
No 70
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=33.66 E-value=1.1e+02 Score=24.02 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=55.7
Q ss_pred CHHHHhcCeEEecCCcccchhh-cHHHHHHHHHHHHHhCCCCCHHHHHHHHHcCccccCCCHHHHHHHHHHHHhCCCHHH
Q 024381 108 GIEDIRKAKVQTVIPASTSFQE-DCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEA 186 (268)
Q Consensus 108 G~~DL~~~~Lr~v~~~~~~f~e-DPlRiLRa~Rfaa~~gf~i~~~t~~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~ 186 (268)
|.-.+.+|-|...... ..|.+ |...-=+.||-...--.++-....+.+++. .-..++.+++..++...+....+.+
T Consensus 25 gf~~~~~Gdi~LT~~G-~~f~~a~~~~rK~if~~~l~~~~Pl~~~I~~~L~~~--~~~~~~~~~~~~~L~~~~~~~~ae~ 101 (120)
T PF09821_consen 25 GFAEVEEGDIRLTPLG-RRFAEADIDERKEIFREQLLRHVPLAAHIRRVLRER--PNHRLPEERFLDELEDHFSPEEAER 101 (120)
T ss_pred CCeeecCCcEEeccch-HHHHHCChHHHHHHHHHHHHhcCCHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHCChhHHHH
Confidence 4445667777776544 44544 333444444433322244444444444432 3355789999999988877667788
Q ss_pred HHHHHHHcCCchhhh
Q 024381 187 SLRLLWKFGLLEVLL 201 (268)
Q Consensus 187 ~l~~m~~~glL~~ll 201 (268)
.++.+-++|....+|
T Consensus 102 ~l~~~i~WGrYaeLf 116 (120)
T PF09821_consen 102 QLRTAIDWGRYAELF 116 (120)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999988766554
No 71
>PF05598 DUF772: Transposase domain (DUF772); InterPro: IPR008490 This presumed domain is found at the N terminus of transposase insH and other related transposases.
Probab=33.64 E-value=1.5e+02 Score=20.46 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=27.0
Q ss_pred hhcHHHHHHHHHHHHHhCCCCCHHHHHHHHHcC
Q 024381 128 QEDCARILRAIRIAARLGFRFSRETAHFVKHLS 160 (268)
Q Consensus 128 ~eDPlRiLRa~Rfaa~~gf~i~~~t~~~i~~~~ 160 (268)
.-+|..|++++=++.-+|+.=+.++.++++.+.
T Consensus 4 ~~~~~~ml~~ll~~~~~~~~S~r~l~~~l~~~~ 36 (77)
T PF05598_consen 4 AYPPRMMLKALLLKYLFGLRSDRELEERLRDNL 36 (77)
T ss_pred CCCHHHHHHHHHHHHHHhcchHHHHHhhHhhhh
Confidence 347899999999999999877778888877654
No 72
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=33.57 E-value=27 Score=30.62 Aligned_cols=15 Identities=7% Similarity=0.069 Sum_probs=12.0
Q ss_pred hHHHHHHHhcccCCC
Q 024381 234 ITLFFFEILSFLGYS 248 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg 248 (268)
..+.+|+|.||+|-+
T Consensus 33 ~alliAal~HDv~Hp 47 (237)
T PF00233_consen 33 FALLIAALCHDVDHP 47 (237)
T ss_dssp HHHHHHHHHTTTT-S
T ss_pred HHHHHHHHHhcCCCC
Confidence 458899999999963
No 73
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=29.45 E-value=1.1e+02 Score=29.91 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=12.7
Q ss_pred hhcHHHHHHHHHHHHH
Q 024381 128 QEDCARILRAIRIAAR 143 (268)
Q Consensus 128 ~eDPlRiLRa~Rfaa~ 143 (268)
.-||.|||+|+..++.
T Consensus 163 ~PDP~Rll~aY~~Saa 178 (474)
T PLN02291 163 RPDPQRMVRAYSQSAA 178 (474)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4499999999987653
No 74
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=29.22 E-value=1e+02 Score=29.78 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=12.6
Q ss_pred hhcHHHHHHHHHHHHH
Q 024381 128 QEDCARILRAIRIAAR 143 (268)
Q Consensus 128 ~eDPlRiLRa~Rfaa~ 143 (268)
.-||.|||+|+..++.
T Consensus 144 ~PDP~Rll~aY~~saa 159 (443)
T TIGR01358 144 VPDPRRLVRAYHQSAA 159 (443)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3499999999987553
No 75
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=29.20 E-value=36 Score=32.90 Aligned_cols=21 Identities=5% Similarity=-0.191 Sum_probs=15.9
Q ss_pred hHHHHHHHhcccCCCCCCcccc
Q 024381 234 ITLFFFEILSFLGYSRGQTDCS 255 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg~g~~h~~ 255 (268)
.++..|+|+||||-+.= +|..
T Consensus 100 ~lv~aa~L~HDiGhpPF-gH~g 120 (440)
T PRK01096 100 AIVQSACLAHDIGNPPF-GHFG 120 (440)
T ss_pred HHHHHHHHHhcCCCCCC-cccH
Confidence 47889999999998652 3443
No 76
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.33 E-value=1.6e+02 Score=23.66 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=42.3
Q ss_pred HHHHHHhCCCCCHHHHHHHHHcCccccCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHcCCchhhh
Q 024381 138 IRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML---AYGSAEASLRLLWKFGLLEVLL 201 (268)
Q Consensus 138 ~Rfaa~~gf~i~~~t~~~i~~~~~~l~~~~~eRi~~El~kiL---~~~~~~~~l~~m~~~glL~~ll 201 (268)
.....+.|+++.+.=...++-....-..++.+.+..++.+-. +-....++|+.|.+.|++..+-
T Consensus 9 ~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~ 75 (145)
T COG0735 9 IERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLE 75 (145)
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEE
Confidence 334456788888765555443322223379999999988642 1112378999999999988763
No 77
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=26.15 E-value=47 Score=32.05 Aligned_cols=18 Identities=6% Similarity=-0.188 Sum_probs=14.8
Q ss_pred chhHHHHHHHhcccCCCC
Q 024381 232 LIITLFFFEILSFLGYSR 249 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~ 249 (268)
+..++-.|+|+||||-|.
T Consensus 91 ~~~l~~a~~L~HDiGhpP 108 (432)
T PRK05318 91 SDSLIESLCLAHDIGHPP 108 (432)
T ss_pred cHHHHHHHHHHhcCCCCC
Confidence 456678999999999875
No 78
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=25.35 E-value=46 Score=32.76 Aligned_cols=17 Identities=6% Similarity=-0.046 Sum_probs=14.2
Q ss_pred hhHHHHHHHhcccCCCC
Q 024381 233 IITLFFFEILSFLGYSR 249 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg~ 249 (268)
..++-.|+|+||||-+.
T Consensus 107 ~~lveaa~L~HDiGhpP 123 (503)
T PRK04926 107 ESIVEMACLMHDIGNPP 123 (503)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 35678999999999875
No 79
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=25.18 E-value=1.2e+02 Score=25.05 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=15.6
Q ss_pred CCCCCceEEEeCC-CHHHHHHHh
Q 024381 3 NRIPKDFDIITSA-ELKEVVRVF 24 (268)
Q Consensus 3 g~~~~D~Di~t~~-~~~~~~~~f 24 (268)
..+..|+||++.. +++.+.+.+
T Consensus 29 di~~SDLDIic~~~d~~~F~~~l 51 (152)
T PF14091_consen 29 DIPGSDLDIICEVPDPEAFEQLL 51 (152)
T ss_pred CCCCCCccEEEEeCCHHHHHHHH
Confidence 4567999998765 566666554
No 80
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=22.89 E-value=59 Score=19.23 Aligned_cols=16 Identities=31% Similarity=0.247 Sum_probs=12.1
Q ss_pred ccccceeecCCCCeEe
Q 024381 88 FTINGLMFDPYAKIIY 103 (268)
Q Consensus 88 FTINAma~~~~~~~l~ 103 (268)
-..|+||+|+..+.|+
T Consensus 9 ~~~~~la~d~~~~~lY 24 (43)
T smart00135 9 GHPNGLAVDWIEGRLY 24 (43)
T ss_pred CCcCEEEEeecCCEEE
Confidence 3459999999887654
No 81
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=22.71 E-value=1.5e+02 Score=18.28 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=21.4
Q ss_pred hcHHHHHHHHHHHHHhCCCCCHHHHHHHHHc
Q 024381 129 EDCARILRAIRIAARLGFRFSRETAHFVKHL 159 (268)
Q Consensus 129 eDPlRiLRa~Rfaa~~gf~i~~~t~~~i~~~ 159 (268)
+||-|++|++. |+-.+=.++.+..+..++.
T Consensus 1 k~~~~V~~G~K-Aal~NPnvSeeaK~~A~~~ 30 (36)
T PF10346_consen 1 KDPNNVAGGYK-AALHNPNVSEEAKQHAREK 30 (36)
T ss_pred CcHHHHHHHHH-HHhcCCCcCHHHHHHHHHH
Confidence 47899999998 4555666777777665543
No 82
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=20.59 E-value=1.2e+02 Score=29.37 Aligned_cols=18 Identities=6% Similarity=-0.217 Sum_probs=15.4
Q ss_pred chhHHHHHHHhcccCCCC
Q 024381 232 LIITLFFFEILSFLGYSR 249 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~ 249 (268)
+..++--|+|+||||-|.
T Consensus 92 ~~~~~~~~~l~hd~GhpP 109 (428)
T PRK03007 92 DPDLVDLAGLAHDIGHPP 109 (428)
T ss_pred CHHHHHHHHHHhcCCCCC
Confidence 467888999999999875
No 83
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=20.17 E-value=2.7e+02 Score=24.31 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=27.7
Q ss_pred HHHHhcccCCCCCCccccCCccccccccccC
Q 024381 238 FFEILSFLGYSRGQTDCSRGSLYPCLSFKAS 268 (268)
Q Consensus 238 lA~LlHDIGKg~g~~h~~~g~~~~~~~~~~~ 268 (268)
+|.|+-+-||.|..+-+--|...||+.-+.|
T Consensus 223 l~~llk~~~~sr~~~~~k~~~sl~~~~~~~s 253 (258)
T COG5200 223 LADLLKKFGISRVAEIFKEGFSLKCLRVHPS 253 (258)
T ss_pred HHHHHHHhccchhhhcccccccchhhccCCC
Confidence 8999999999999999999999999976654
Done!