Query 024381
Match_columns 268
No_of_seqs 236 out of 1651
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 07:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aql_A Poly(A) polymerase; tra 100.0 2.3E-59 8E-64 440.6 13.2 252 1-258 46-323 (415)
2 1miw_A TRNA CCA-adding enzyme; 100.0 1.6E-53 5.6E-58 400.0 16.2 224 1-247 33-261 (404)
3 1vfg_A A-adding enzyme, poly A 100.0 6.6E-53 2.3E-57 394.6 18.9 235 1-248 24-271 (390)
4 1ou5_A TRNA CCA-adding enzyme, 100.0 2E-52 6.8E-57 396.9 16.1 228 1-248 84-320 (448)
5 3h38_A TRNA nucleotidyl transf 100.0 3.4E-50 1.2E-54 380.1 16.0 235 1-247 48-293 (441)
6 3djb_A Hydrolase, HD family; a 95.0 0.0059 2E-07 52.1 0.9 27 232-258 47-73 (223)
7 3b57_A LIN1889 protein; Q92AN1 94.3 0.012 4E-07 49.5 1.3 25 231-255 46-70 (209)
8 3dto_A BH2835 protein; all alp 94.3 0.015 5E-07 49.7 1.9 27 231-257 46-72 (223)
9 2qgs_A Protein Se1688; alpha-h 94.3 0.0087 3E-07 51.0 0.5 20 232-251 48-67 (225)
10 2pjq_A Uncharacterized protein 94.3 0.0097 3.3E-07 50.9 0.6 27 231-257 51-77 (231)
11 3gw7_A Uncharacterized protein 93.9 0.016 5.3E-07 50.1 1.1 26 232-257 47-77 (239)
12 2pq7_A Predicted HD superfamil 93.0 0.047 1.6E-06 46.0 2.6 27 232-258 55-85 (220)
13 2hek_A Hypothetical protein; p 92.7 0.056 1.9E-06 49.5 3.0 26 234-259 75-111 (371)
14 2o08_A BH1327 protein; putativ 92.5 0.047 1.6E-06 44.9 2.0 18 232-249 40-57 (188)
15 3ccg_A HD superfamily hydrolas 92.3 0.053 1.8E-06 44.7 2.0 19 232-250 41-59 (190)
16 2ogi_A Hypothetical protein SA 92.3 0.053 1.8E-06 44.9 2.0 18 232-249 48-65 (196)
17 2ibn_A Inositol oxygenase; red 89.5 0.25 8.7E-06 42.3 3.6 31 231-261 75-110 (250)
18 3kq5_A Hypothetical cytosolic 85.3 0.26 8.9E-06 45.2 1.3 16 233-248 103-118 (393)
19 3m5f_A Metal dependent phospho 85.2 0.27 9.1E-06 42.3 1.3 17 233-249 56-72 (244)
20 3tm8_A BD1817, uncharacterized 84.7 0.27 9.3E-06 44.0 1.1 16 236-251 196-211 (328)
21 2q14_A Phosphohydrolase; BT420 83.5 0.46 1.6E-05 44.1 2.1 17 233-249 86-102 (410)
22 3hc1_A Uncharacterized HDOD do 83.4 0.25 8.5E-06 43.6 0.3 17 232-248 141-157 (305)
23 2dqb_A Deoxyguanosinetriphosph 82.8 0.85 2.9E-05 41.8 3.6 25 225-249 89-114 (376)
24 3i7a_A Putative metal-dependen 81.2 0.52 1.8E-05 40.9 1.5 17 232-248 146-162 (281)
25 3rf0_A Exopolyphosphatase; str 80.8 0.67 2.3E-05 38.7 2.0 19 234-252 52-70 (209)
26 1vqr_A Hypothetical protein CJ 80.7 0.28 9.5E-06 43.0 -0.4 17 232-248 147-163 (297)
27 3ljx_A MMOQ response regulator 74.3 0.77 2.6E-05 40.1 0.5 17 232-248 131-147 (288)
28 3m1t_A Putative phosphohydrola 73.6 0.76 2.6E-05 39.8 0.3 17 232-248 127-143 (275)
29 3mem_A Putative signal transdu 71.5 1.6 5.3E-05 40.8 1.9 17 232-248 304-320 (457)
30 2paq_A 5'-deoxynucleotidase YF 70.7 0.86 3E-05 37.9 -0.0 22 232-253 59-80 (201)
31 1u6z_A Exopolyphosphatase; alp 70.6 3.1 0.00011 39.4 3.9 18 234-251 361-378 (513)
32 3sk9_A Putative uncharacterize 69.3 1.4 4.7E-05 38.3 1.0 16 233-248 64-79 (265)
33 3hi0_A Putative exopolyphospha 67.3 2.3 7.9E-05 40.3 2.2 39 211-249 327-375 (508)
34 2r8q_A Class I phosphodiestera 60.0 11 0.00037 34.1 5.1 15 233-247 130-144 (359)
35 3dyn_A High affinity CGMP-spec 59.2 16 0.00056 32.5 6.1 90 146-247 9-119 (329)
36 3qi3_A High affinity CGMP-spec 58.9 16 0.00054 34.8 6.2 15 233-247 282-296 (533)
37 1tbf_A CGMP-specific 3',5'-cyc 57.0 15 0.0005 33.1 5.4 15 233-247 131-145 (347)
38 1f0j_A PDE4B, phosphodiesteras 56.8 10 0.00035 34.5 4.4 15 233-247 113-127 (377)
39 3irh_A HD domain protein; phos 56.7 4.8 0.00016 37.9 2.2 16 234-249 125-140 (480)
40 3v93_A Cyclic nucleotide speci 55.3 15 0.00052 33.0 5.2 15 233-247 130-144 (345)
41 3itu_A CGMP-dependent 3',5'-cy 54.3 15 0.0005 33.0 4.9 15 233-247 112-126 (345)
42 1y2k_A DPDE3, PDE43, CAMP-spec 51.8 17 0.00058 32.6 4.9 15 233-247 126-140 (349)
43 3u1n_A SAM domain and HD domai 49.0 6.9 0.00023 37.3 1.9 26 234-260 99-124 (528)
44 2huo_A Inositol oxygenase; pro 48.5 10 0.00036 32.9 2.8 35 227-261 110-149 (289)
45 3bg2_A DGTP triphosphohydrolas 46.8 8.4 0.00029 35.9 2.1 16 234-249 107-122 (444)
46 2our_A CAMP and CAMP-inhibited 46.8 9.9 0.00034 33.9 2.5 15 233-247 108-122 (331)
47 3ecm_A High affinity CAMP-spec 46.6 24 0.00081 31.5 5.0 63 185-247 35-119 (338)
48 3ibj_A CGMP-dependent 3',5'-cy 45.4 27 0.00093 33.8 5.7 63 185-248 404-488 (691)
49 1zkl_A HCP1, TM22, high-affini 44.3 16 0.00055 32.8 3.6 16 233-248 113-128 (353)
50 3bjc_A CGMP-specific 3',5'-cyc 42.9 28 0.00095 35.0 5.4 16 233-248 646-661 (878)
51 2pgs_A Putative deoxyguanosine 42.8 10 0.00035 35.4 2.1 16 234-249 100-115 (451)
52 1so2_A CGMP-inhibited 3',5'-cy 42.6 34 0.0012 31.5 5.5 14 234-247 159-172 (420)
53 3g4g_A DPDE3, PDE43, CAMP-spec 41.6 32 0.0011 31.8 5.1 61 186-247 123-206 (421)
54 2cqz_A 177AA long hypothetical 36.6 7.3 0.00025 31.4 -0.0 22 232-253 59-80 (177)
55 4ekf_A Adenain; alpha and beta 31.6 21 0.00071 29.3 1.9 16 92-107 57-74 (204)
56 2fcl_A Hypothetical protein TM 28.6 87 0.003 24.7 5.2 23 4-26 51-74 (169)
57 4ets_A Ferric uptake regulatio 25.0 92 0.0031 24.3 4.7 65 137-201 20-89 (162)
58 1taz_A Calcium/calmodulin-depe 24.9 26 0.0009 31.6 1.6 15 233-247 112-126 (365)
59 1gxi_E Photosystem I reaction 22.1 25 0.00086 24.0 0.6 20 242-263 18-37 (73)
60 1qgp_A Protein (double strande 22.1 11 0.00039 25.9 -1.2 58 140-199 2-63 (77)
No 1
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=100.00 E-value=2.3e-59 Score=440.59 Aligned_cols=252 Identities=28% Similarity=0.436 Sum_probs=215.7
Q ss_pred CCCCCCCceEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccc--ccC---ccccccC----CCC
Q 024381 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRF--SRD---FKYEFER----PIG 71 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~--~~~---~~~d~~~----~~~ 71 (268)
|||++|+|+||+|+++|++++++|+++..+|++|||++|..++..+||+|||++.+.. ... +..+.+. ..+
T Consensus 46 LLg~~~~D~Di~t~a~p~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (415)
T 3aql_A 46 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFG 125 (415)
T ss_dssp HHSSCCSCCEEEESSCHHHHHHHTTTSCCCCCSSSCCEEESSSCEEEEEECCC-----------------------CCCC
T ss_pred HcCCCCCCEEEEcCCCHHHHHHHhhhCeEecccCCEEEEEECCcEEEEeeecccccccccccccccccCCCcccccccCC
Confidence 5899999999999999999999998888899999999999999999999999976532 000 0011111 236
Q ss_pred CChhhhHHhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHH
Q 024381 72 CDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRE 151 (268)
Q Consensus 72 ~~~eDL~r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~ 151 (268)
++++||. |||||||||||++.+|.|+|||||++||++|+||++++|.++|.|||+||||+||||+++||.|+++
T Consensus 126 tl~eDl~------RRDFTINAla~~~~~~~l~D~~gG~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~ 199 (415)
T 3aql_A 126 SIEEDAQ------RRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPE 199 (415)
T ss_dssp CHHHHHT------TSSBSGGGCEEETTTCCEECSSSHHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHH
T ss_pred CHHHHHh------cCCccceeEEEeCCCCeeeCCCCCHHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHH
Confidence 7899986 9999999999999888999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHhh-cCCccCchhHhHHHH----H
Q 024381 152 TAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK-HGFRRRDKRSNLLLV----I 226 (268)
Q Consensus 152 t~~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~q-~~yH~~d~~~~~l~~----l 226 (268)
|.++|++++..|..++.||++.||.|||.++++..+|+.|+++|+|..++|++..+++| ..||++++..|++.. +
T Consensus 200 T~~ai~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL~~~lPe~~~i~~~~q~~h~~~v~~h~L~~~d~~i 279 (415)
T 3aql_A 200 TAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRI 279 (415)
T ss_dssp HHTHHHHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCSTTTCHHHHTTCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhchhHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887 448888887777654 3
Q ss_pred HhccCchhHHHHHHHhc-ccCCC------C-C----CccccCCc
Q 024381 227 STYLLLIITLFFFEILS-FLGYS------R-G----QTDCSRGS 258 (268)
Q Consensus 227 ~~~~~~~~~L~lA~LlH-DIGKg------~-g----~~h~~~g~ 258 (268)
....+.+++|+||+||| ||||| + | ++|+..|.
T Consensus 280 ~~~~~~~~~L~lAALLH~di~K~~~~~~~~~G~~~~~~h~~~ga 323 (415)
T 3aql_A 280 HNDMRVNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMN 323 (415)
T ss_dssp HTTCCCCHHHHHHHHTHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hcCCCCCHHHHHhHhcCcchhhhhhhhhhccCCCchHHHHHHHH
Confidence 34456778999999999 99997 3 2 37876653
No 2
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=100.00 E-value=1.6e-53 Score=400.01 Aligned_cols=224 Identities=30% Similarity=0.404 Sum_probs=192.7
Q ss_pred CCCCCCCceEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccCccccccCC-----CCCChh
Q 024381 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERP-----IGCDEK 75 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~~~-----~~~~~e 75 (268)
|||++|+|+||+|++.|+++++.|++...+|+.|||++|..+|..+||+++|+|.++.+ .+.| .+++++
T Consensus 33 lLg~~~~D~Di~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~~~~ev~t~R~e~~~~~------~~~p~~v~~~~~l~~ 106 (404)
T 1miw_A 33 LLGRPIGDVDIATSALPEDVMAIFPKTIDVGSKHGTVVVVHKGKAYEVTTFKTDGDYED------YRRPESVTFVRSLEE 106 (404)
T ss_dssp HHTCCCCCCEEEESSCHHHHHHHCSSEEEEEGGGTEEEEEETTEEEEEEECEECC---------------CCEECSCHHH
T ss_pred HcCCCCCCEEEEeCCCHHHHHHHhhhhcccCcCCCeEEEEECCeEEEEeeecccCCCCC------CcCCcccccCCcHHH
Confidence 58999999999999999999999987667899999999999999999999999876543 3444 257799
Q ss_pred hhHHhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHHHHH
Q 024381 76 DFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHF 155 (268)
Q Consensus 76 DL~r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t~~~ 155 (268)
||. |||||||||||++ +|.|+|||||++||++|+||++++|.++|.|||+||||+||||+++||.|+++|.++
T Consensus 107 Dl~------RRDfTiNAla~~~-~g~l~D~~~G~~Dl~~~~ir~~~~p~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~~a 179 (404)
T 1miw_A 107 DLK------RRDFTMNAIAMDE-YGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELGFALAPDTEQA 179 (404)
T ss_dssp HHH------TSSBSGGGCEECT-TCCEECTTCHHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHHCCEECHHHHHH
T ss_pred HHH------hCCCCcchheeCC-CCCEeCCCCCHHHHhCCeeeecCChHhhHHhhHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 996 9999999999998 677999999999999999999999989999999999999999999999999999999
Q ss_pred HHHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHhhcCCccCchhHhHHHHHHhccCchhH
Q 024381 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLVISTYLLLIIT 235 (268)
Q Consensus 156 i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~q~~yH~~d~~~~~l~~l~~~~~~~~~ 235 (268)
|+++++.+..+|.||++.||.|||.++++..+++.|+++|+|.. +|++..+. +.||++.+... + .+. ..+
T Consensus 180 i~~~~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~~-lPe~~~~~--~~~~~l~~~~~-----~-~~~-~~~ 249 (404)
T 1miw_A 180 IVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY-LPGLAGKE--KQLRLAAAYRW-----P-WLA-ARE 249 (404)
T ss_dssp HHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTS-STTCSSCH--HHHHHGGGSCG-----G-GCC-SHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhh-CcchhhHH--HHHHHHHHHhc-----c-ccC-ChH
Confidence 99999999999999999999999999999999999999999998 69987643 23444332100 0 122 356
Q ss_pred HHHHHHhcccCC
Q 024381 236 LFFFEILSFLGY 247 (268)
Q Consensus 236 L~lA~LlHDIGK 247 (268)
++||+|||||||
T Consensus 250 l~~aaLlhdigk 261 (404)
T 1miw_A 250 ERWALLCHALGV 261 (404)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHhCCH
Confidence 999999999998
No 3
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=6.6e-53 Score=394.59 Aligned_cols=235 Identities=25% Similarity=0.337 Sum_probs=191.0
Q ss_pred CCCCCCCceEEEeCCCH----HHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccCccccccCCCCCChhh
Q 024381 1 MLNRIPKDFDIITSAEL----KEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKD 76 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~----~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~~~~~~~~eD 76 (268)
|||++|+|+||+|++++ +++++.|+....+|++|||++|..+|..+||+++|+|.++.++..+. + ..+++++|
T Consensus 24 llg~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~~~~~~e~~~~R~e~~~~~~~~p~-v--~~~~l~~D 100 (390)
T 1vfg_A 24 LLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRETYPRPGAYPK-V--EPASLKED 100 (390)
T ss_dssp HTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSCC----------C--CCCCHHHH
T ss_pred HcCCCCCCEEEEEeCChHHHHHHHHHHcCCceeecCCCcEEEEEECCEEEEEeccCcccCCCCCCCCc-c--CCCCHHHH
Confidence 68999999999999986 55667776555679999999999999999999999997655433221 1 13578999
Q ss_pred hHHhhhhccCCccccceeecCCC---CeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHHH
Q 024381 77 FIRWRNCLQRDFTINGLMFDPYA---KIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETA 153 (268)
Q Consensus 77 L~r~~d~~rRDFTINAma~~~~~---~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t~ 153 (268)
|. |||||||||||+++. |.|+|||||++||++|+||++++ .+|.|||+||||+|||++++||.|+++|.
T Consensus 101 l~------RRDfTiNAla~~~~~~~~g~l~D~~~G~~DL~~~~ir~v~~--~~F~eDPlRiLRa~Rfaa~~gf~i~~~T~ 172 (390)
T 1vfg_A 101 LI------RRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDKVIRVLHP--VSFIEDPVRILRALRFAGRLNFKLSRSTE 172 (390)
T ss_dssp HH------TSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTTEECBSST--THHHHCTTHHHHHHHHHHHHTCEECHHHH
T ss_pred Hh------hCCCchhheeecccCCCCCeEEeCCCCHHHHhCCeeEeCCc--cchhhCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 96 999999999999763 78999999999999999999997 79999999999999999999999999999
Q ss_pred HHHHHcC--ccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHh--h--cCCccCchhHhHHHHHH
Q 024381 154 HFVKHLS--PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV--K--HGFRRRDKRSNLLLVIS 227 (268)
Q Consensus 154 ~~i~~~~--~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~--q--~~yH~~d~~~~~l~~l~ 227 (268)
++|++++ ..+..++.||++.||.|+|.++++..+++.|+++|+|..++|++....+ | ...|+. ..++.. ...
T Consensus 173 ~~i~~~~~~~~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~~lPe~~~~~~~~q~l~~~~~~-~~~~~~-~~~ 250 (390)
T 1vfg_A 173 KLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWNEKVLQKLYALRKV-VDWHAL-EFS 250 (390)
T ss_dssp HHHHHHHHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHHSTTCCCCHHHHHHHHHHHHH-HHHHHH-HGG
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhhhhhhhHHHHHHHHHHH-HHHhHH-hhh
Confidence 9999984 4799999999999999999999999999999999999999999986543 2 111110 011111 113
Q ss_pred hccCchhHHHHHHHhcccCCC
Q 024381 228 TYLLLIITLFFFEILSFLGYS 248 (268)
Q Consensus 228 ~~~~~~~~L~lA~LlHDIGKg 248 (268)
.+...+.+++||+|||||||.
T Consensus 251 ~~~~~~~~l~laaLlhdi~~~ 271 (390)
T 1vfg_A 251 EERIDYGWLYLLILISNLDYE 271 (390)
T ss_dssp GSCCCHHHHHHHHHHCSCCSS
T ss_pred ccccchHHHHHHHHHccCCHH
Confidence 345577899999999999973
No 4
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=2e-52 Score=396.87 Aligned_cols=228 Identities=19% Similarity=0.243 Sum_probs=192.8
Q ss_pred CCCCCCCceEEEeCCCHHHHHHHhccC----cc-cccccceEEEEeCCEEEEEecccccccccccCccccccCCCCCChh
Q 024381 1 MLNRIPKDFDIITSAELKEVVRVFSQC----EI-VGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEK 75 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~~~~~~~f~~~----~~-~g~~f~~~~v~~~~~~~ev~~~r~~~~~~~~~~~~d~~~~~~~~~e 75 (268)
|||++|+|+||+|+++|+++++.|.+. .. +|.+|||+++..++..+||+++|++.+... ..+ .+ ....++++
T Consensus 84 LLg~~~~D~Di~~~~~p~~~~~~~~~~g~~~~~~~g~~~gt~~v~~~~~~~ev~t~R~~~~~~~-r~~-~v-~~~~~l~e 160 (448)
T 1ou5_A 84 LNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDG-RHA-EV-EFTTDWQK 160 (448)
T ss_dssp HHTSCCSSCEEEESSCHHHHHHHHTTTTCCBCCCCCTTCCCEEECTTTTCEEEEECCS---------------SSCCSSC
T ss_pred HcCCCCCCEEEEeCCCHHHHHHHHHHcCCccccCcCcccceEEEEECCEEEEEEeecccccccC-CCC-cc-ccCccHHH
Confidence 589999999999999999999999853 23 689999999998889999999999865321 111 01 11235789
Q ss_pred hhHHhhhhccCCccccceeecCCCCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHh--CC-CCCHHH
Q 024381 76 DFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL--GF-RFSRET 152 (268)
Q Consensus 76 DL~r~~d~~rRDFTINAma~~~~~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~--gf-~i~~~t 152 (268)
||. |||||||||||++ +|.|+|||||++||++|+||++++|.++|.|||+||||+|||++++ || .|+++|
T Consensus 161 Dl~------RRDFTINAla~~~-~g~l~D~~gG~~DL~~~~IR~v~d~~~rF~EDPLRiLRa~RFaarl~~gf~~I~~~T 233 (448)
T 1ou5_A 161 DAE------RRDLTINSMFLGF-DGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPET 233 (448)
T ss_dssp CGG------GSSBGGGSCEECS-SCBEECSSSHHHHTTTTCCCBSSTTTTTSSSCTTHHHHHHHHHHHSCSSSSCCCHHH
T ss_pred HHH------HcCCChhheeECC-CCCEeCCCCCHHHHhCCeEEecCChHHhhhhCHHHHHHHHHHHHHcCcCCCCcCHHH
Confidence 986 9999999999999 6889999999999999999999999899999999999999999999 96 999999
Q ss_pred HHHHHHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhh-hhhhHHhHhhcCCccCchhHhHHHHHHhccC
Q 024381 153 AHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVL-LPIQAAYLVKHGFRRRDKRSNLLLVISTYLL 231 (268)
Q Consensus 153 ~~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~l-lPe~~~~~~q~~yH~~d~~~~~l~~l~~~~~ 231 (268)
+++|+++++.|..++.||++.||.|||.++++..+|+.|+++|+|..+ +|++..+.. ..+++ .....+.
T Consensus 234 ~~ai~~~~~~L~~is~ERi~~El~kiL~~~~~~~~l~~L~~~GlL~~i~lPe~~~i~~---------~~~~l-~~~~~~~ 303 (448)
T 1ou5_A 234 LEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEE---------FDKVS-KNVDGFS 303 (448)
T ss_dssp HHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGGTCCCCSCCHH---------HHHHH-HHHTTSC
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHCCCceEecCcchhhHHH---------HHHHH-HHHHhcC
Confidence 999999999999999999999999999999999999999999999999 999876432 12233 2334556
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
.+++++||+||||+||.
T Consensus 304 ~~~~l~lAaLlhDi~ka 320 (448)
T 1ou5_A 304 PKPVTLLASLFKVQDDV 320 (448)
T ss_dssp CCHHHHHGGGCCSTTTT
T ss_pred CCHHHHHHHHhcChHHH
Confidence 78899999999999984
No 5
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=100.00 E-value=3.4e-50 Score=380.09 Aligned_cols=235 Identities=19% Similarity=0.263 Sum_probs=190.3
Q ss_pred CCCCCCCceEEEeCCCHHHHHHHhccC----cccccccceEEEEe-CCEEEEEecccccccccccCccccccCCCCCChh
Q 024381 1 MLNRIPKDFDIITSAELKEVVRVFSQC----EIVGKRFPICHVHF-ENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEK 75 (268)
Q Consensus 1 llg~~~~D~Di~t~~~~~~~~~~f~~~----~~~g~~f~~~~v~~-~~~~~ev~~~r~~~~~~~~~~~~d~~~~~~~~~e 75 (268)
|||++|+|+||+|+++|+++++.+.+. ..+|++|||++|.. +|..+||+|+|+|.|..++..+. +. .+++++
T Consensus 48 LLg~~~~D~Di~t~~~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~g~~~ev~t~R~e~~~~~~~~p~-V~--~~~l~e 124 (441)
T 3h38_A 48 LLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPD-VE--MSTIKK 124 (441)
T ss_dssp HHTCCCCCEEEEESSCHHHHHHHHHTTSCEEEECCSSTTEEEEEETTSCEEEEEECCEECCSSSSSCCE-ES--CCCHHH
T ss_pred HCCCCCCCeeEEeCCCHHHHHHHHHHHcCCEeccCCcCcEEEEEEeCCeEEEEecccccccCCCCCCCc-cC--CCCHHH
Confidence 589999999999999999888776532 24699999999998 88999999999997655443331 11 357899
Q ss_pred hhHHhhhhccCCccccceeecCC---CCeEeecCCCHHHHhcCeEEecCCcccchhhcHHHHHHHHHHHHHhCCCCCHHH
Q 024381 76 DFIRWRNCLQRDFTINGLMFDPY---AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRET 152 (268)
Q Consensus 76 DL~r~~d~~rRDFTINAma~~~~---~~~l~Dp~~G~~DL~~~~Lr~v~~~~~~f~eDPlRiLRa~Rfaa~~gf~i~~~t 152 (268)
||. |||||||||||+++ .|.|+|||||++||++|+||++++ .+|.|||+||||++||++++||.++++|
T Consensus 125 Dl~------RRDFTINAla~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~--~~F~eDplRiLRa~Rfaa~lgf~i~~~t 196 (441)
T 3h38_A 125 DLY------RRDFTINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIEETT 196 (441)
T ss_dssp HHH------TSSBGGGSCEEECSGGGTTEEECSSSHHHHHHTTEECBSST--THHHHCTTHHHHHHHHHHHTTCEECHHH
T ss_pred HHH------hccchhhhhhcccCCCCCCeEeCCCCCHHHHhCCEEEECCC--CChhhCHHHHHHHHHHHHHhCCCCChHH
Confidence 996 99999999999876 489999999999999999999997 6899999999999999999999999999
Q ss_pred HHHHHHcC--ccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhHHhHh-hcCCccCchhHhHHHHHHhc
Q 024381 153 AHFVKHLS--PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV-KHGFRRRDKRSNLLLVISTY 229 (268)
Q Consensus 153 ~~~i~~~~--~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~llPe~~~~~~-q~~yH~~d~~~~~l~~l~~~ 229 (268)
.++|++++ ..+..+|.||++.||.|+|.++++..+++.|+++|+|..++|++..... ...++............+..
T Consensus 197 ~~~i~~~~~~~~l~~is~eRi~~El~kll~~~~~~~~l~~l~~~glL~~i~Pel~~~~~~~~~l~~~~~~~~~~~~~~~~ 276 (441)
T 3h38_A 197 ERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYTPSMDEKMENLFRNIPWVEENFGE 276 (441)
T ss_dssp HHHHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTHHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhchhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhCcccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999874 6788999999999999999999999999999999999999999874211 11111111000011112222
Q ss_pred cCchhHHHHHHHhcccCC
Q 024381 230 LLLIITLFFFEILSFLGY 247 (268)
Q Consensus 230 ~~~~~~L~lA~LlHDIGK 247 (268)
...++++||+|+|++++
T Consensus 277 -~~~~~~~l~~L~~~~~~ 293 (441)
T 3h38_A 277 -VDRFYAVLHVFLEFYDD 293 (441)
T ss_dssp -CCHHHHHHHHHTTTCCH
T ss_pred -hhhHHHHHHHHhCCCCH
Confidence 35678899999999875
No 6
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=94.98 E-value=0.0059 Score=52.14 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=22.3
Q ss_pred chhHHHHHHHhcccCCCCCCccccCCc
Q 024381 232 LIITLFFFEILSFLGYSRGQTDCSRGS 258 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g~~h~~~g~ 258 (268)
++.++++|+|||||||+...+|+..|.
T Consensus 47 d~~~l~~AAlLHDig~~k~~~h~~~ga 73 (223)
T 3djb_A 47 NRFIIEMAALLHDVADEKLNESEEAGM 73 (223)
T ss_dssp CHHHHHHHHTTHHHHC--CCSSSTTTH
T ss_pred CHHHHHHHHHHhhccccccCCcHHHHH
Confidence 689999999999999998888887774
No 7
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=94.35 E-value=0.012 Score=49.48 Aligned_cols=25 Identities=12% Similarity=-0.063 Sum_probs=15.9
Q ss_pred CchhHHHHHHHhcccCCCCCCcccc
Q 024381 231 LLIITLFFFEILSFLGYSRGQTDCS 255 (268)
Q Consensus 231 ~~~~~L~lA~LlHDIGKg~g~~h~~ 255 (268)
.++.++++|+|||||||....++..
T Consensus 46 ~d~~~v~~AAlLHDig~~~~~~~~~ 70 (209)
T 3b57_A 46 GDLFTIELAALFHDYSDIKLTTDEQ 70 (209)
T ss_dssp SCHHHHHHHHHHTTCCC-------C
T ss_pred CCHHHHHHHHHHhccCcccCCCchH
Confidence 3688999999999999987665543
No 8
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=94.35 E-value=0.015 Score=49.69 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=17.2
Q ss_pred CchhHHHHHHHhcccCCCCCCccccCC
Q 024381 231 LLIITLFFFEILSFLGYSRGQTDCSRG 257 (268)
Q Consensus 231 ~~~~~L~lA~LlHDIGKg~g~~h~~~g 257 (268)
.++.++++|+|||||||....+|...|
T Consensus 46 ~d~~~l~~AalLHDig~~k~~~~~~~g 72 (223)
T 3dto_A 46 VDVFVVQIAALFHDLIDDKLVDDPETA 72 (223)
T ss_dssp CCHHHHHHHHHHHSTTC-------CHH
T ss_pred CCHHHHHHHHHHhhccccccCCCHHHH
Confidence 368999999999999998776775554
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=94.35 E-value=0.0087 Score=50.96 Aligned_cols=20 Identities=10% Similarity=-0.135 Sum_probs=17.3
Q ss_pred chhHHHHHHHhcccCCCCCC
Q 024381 232 LIITLFFFEILSFLGYSRGQ 251 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g~ 251 (268)
++.++++|+|||||||....
T Consensus 48 d~~~l~lAAlLHDigk~~~~ 67 (225)
T 2qgs_A 48 DTLVIELSSLLHDTVDSKLT 67 (225)
T ss_dssp CCHHHHHHHHHTTTTCCSSS
T ss_pred CHHHHHHHHHHHcCCCCCCC
Confidence 68899999999999997544
No 10
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=94.27 E-value=0.0097 Score=50.90 Aligned_cols=27 Identities=4% Similarity=-0.190 Sum_probs=16.1
Q ss_pred CchhHHHHHHHhcccCCCCCCccccCC
Q 024381 231 LLIITLFFFEILSFLGYSRGQTDCSRG 257 (268)
Q Consensus 231 ~~~~~L~lA~LlHDIGKg~g~~h~~~g 257 (268)
.++.++++|+|||||||+...+|...|
T Consensus 51 ~d~~ll~lAAlLHDigk~k~~~~~~~g 77 (231)
T 2pjq_A 51 ANLNLTLAAAWLHDVIDDKLMANPAKA 77 (231)
T ss_dssp CCHHHHHHHHHHHHHHC---------C
T ss_pred CCHHHHHHHHHHHcCCcccCCChHHHH
Confidence 368899999999999998766665544
No 11
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=93.89 E-value=0.016 Score=50.05 Aligned_cols=26 Identities=4% Similarity=-0.142 Sum_probs=18.7
Q ss_pred chhHHHHHHHhcccCCCC-----CCccccCC
Q 024381 232 LIITLFFFEILSFLGYSR-----GQTDCSRG 257 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~-----g~~h~~~g 257 (268)
++.++++|+|||||||.. ..+|+..|
T Consensus 47 d~~~~~~AalLHDig~~~~~~~~~~~H~~~g 77 (239)
T 3gw7_A 47 DMLVILTACYFHDIVSLAKNHPQRQRSSILA 77 (239)
T ss_dssp CTTHHHHHHHHTTTTC--------CCSSHHH
T ss_pred CHHHHHHHHHHhhcccccccCCccccHHHHH
Confidence 688999999999999963 23566554
No 12
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=92.95 E-value=0.047 Score=45.98 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=21.2
Q ss_pred chhHHHHHHHhcccCCC----CCCccccCCc
Q 024381 232 LIITLFFFEILSFLGYS----RGQTDCSRGS 258 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg----~g~~h~~~g~ 258 (268)
++.++++|+||||||+. .+.+|+..|.
T Consensus 55 d~~~l~~AaLLHDIg~~~~~~~~~~H~~~ga 85 (220)
T 2pq7_A 55 DLQKAIIAALLHDIKRPHEALTGVDHAESGA 85 (220)
T ss_dssp CHHHHHHHHHHTTTTHHHHHHHCCCHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcccCCCcCCHHHHHH
Confidence 67899999999999874 2456776665
No 13
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=92.73 E-value=0.056 Score=49.55 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=20.9
Q ss_pred hHHHHHHHhcccCCCC-----------CCccccCCcc
Q 024381 234 ITLFFFEILSFLGYSR-----------GQTDCSRGSL 259 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg~-----------g~~h~~~g~~ 259 (268)
..++.|+|||||||+. |.+|...|..
T Consensus 75 ~~~~~AaLLHDiG~~pfsh~~e~~~~~g~~He~~g~~ 111 (371)
T 2hek_A 75 ELVKLAGLLHDLGHPPFSHTTEVLLPRERSHEDFTER 111 (371)
T ss_dssp HHHHHHHHTTTTTCCSSSSCHHHHSTTSSSCCCHHHH
T ss_pred HHHHHHHHHHhcCccccccchHHHhccCCCHHHHHHH
Confidence 6899999999999986 5677666543
No 14
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=92.52 E-value=0.047 Score=44.87 Aligned_cols=18 Identities=11% Similarity=-0.210 Sum_probs=15.5
Q ss_pred chhHHHHHHHhcccCCCC
Q 024381 232 LIITLFFFEILSFLGYSR 249 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~ 249 (268)
+++.+++|+|||||||..
T Consensus 40 ~~~~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 40 DQQKAELAAIFHDYAKFR 57 (188)
T ss_dssp CHHHHHHHHHHTTTTTTS
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 456799999999999974
No 15
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=92.28 E-value=0.053 Score=44.65 Aligned_cols=19 Identities=0% Similarity=-0.358 Sum_probs=15.7
Q ss_pred chhHHHHHHHhcccCCCCC
Q 024381 232 LIITLFFFEILSFLGYSRG 250 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g 250 (268)
+++.+++|+|||||||...
T Consensus 41 d~~~~~~AgLLHDiGk~~~ 59 (190)
T 3ccg_A 41 DTEKARIAGLVHDCAKKLP 59 (190)
T ss_dssp CHHHHHHHHHHTTTTTTSC
T ss_pred CHHHHHHHHHHHHhcCCCC
Confidence 3567999999999999753
No 16
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=92.26 E-value=0.053 Score=44.94 Aligned_cols=18 Identities=6% Similarity=-0.310 Sum_probs=15.4
Q ss_pred chhHHHHHHHhcccCCCC
Q 024381 232 LIITLFFFEILSFLGYSR 249 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~ 249 (268)
+++.+++|+|||||||..
T Consensus 48 d~~~~~~AgLLHDIGK~~ 65 (196)
T 2ogi_A 48 DKEKAGLAALLHDYAKEL 65 (196)
T ss_dssp CHHHHHHHHHHTTTTTTC
T ss_pred CHHHHHHHHHHHHcCCcC
Confidence 456799999999999974
No 17
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=89.48 E-value=0.25 Score=42.30 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=24.3
Q ss_pred Cch-hHHHHHHHhcccCCC---C-CCccccCCcccc
Q 024381 231 LLI-ITLFFFEILSFLGYS---R-GQTDCSRGSLYP 261 (268)
Q Consensus 231 ~~~-~~L~lA~LlHDIGKg---~-g~~h~~~g~~~~ 261 (268)
..+ +++.+|+|+|||||- . .+.|+..|..+|
T Consensus 75 g~d~dw~~laaLlHDLGkll~~~~~~qW~vvgdtfp 110 (250)
T 2ibn_A 75 HPDKDWFHLVGLLHDLGKVLALFGEPQWAVVGDTFP 110 (250)
T ss_dssp STTCHHHHHHHHHTTGGGHHHHTTCCGGGTSSCCCB
T ss_pred CcChhHHHHHHHHhccHhhhcccCCcchhhccCccc
Confidence 344 889999999999993 2 345888998877
No 18
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=85.32 E-value=0.26 Score=45.17 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=14.6
Q ss_pred hhHHHHHHHhcccCCC
Q 024381 233 IITLFFFEILSFLGYS 248 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg 248 (268)
..++++|||||||||-
T Consensus 103 r~~l~~aALLHDIGKl 118 (393)
T 3kq5_A 103 RYALFSAGLLLEVAHA 118 (393)
T ss_dssp HHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHhccchh
Confidence 4589999999999998
No 19
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=85.23 E-value=0.27 Score=42.34 Aligned_cols=17 Identities=12% Similarity=-0.066 Sum_probs=14.4
Q ss_pred hhHHHHHHHhcccCCCC
Q 024381 233 IITLFFFEILSFLGYSR 249 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg~ 249 (268)
..++.+|++|||+||..
T Consensus 56 ~~ll~~a~llHDiGKa~ 72 (244)
T 3m5f_A 56 DEFMKILIKLHDIGKAS 72 (244)
T ss_dssp HHHHHHHHHHTTGGGGB
T ss_pred HHHHHHHHHHcccccCC
Confidence 35688999999999973
No 20
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=84.69 E-value=0.27 Score=43.97 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=13.7
Q ss_pred HHHHHHhcccCCCCCC
Q 024381 236 LFFFEILSFLGYSRGQ 251 (268)
Q Consensus 236 L~lA~LlHDIGKg~g~ 251 (268)
+.+|+|||||||-.-.
T Consensus 196 l~~aaLLHDIGk~~ip 211 (328)
T 3tm8_A 196 LTLGALLHDYGHHHSP 211 (328)
T ss_dssp HHHHHHHTTGGGTTCS
T ss_pred HHHHHHHhcCCcccCC
Confidence 8899999999997543
No 21
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=83.49 E-value=0.46 Score=44.05 Aligned_cols=17 Identities=12% Similarity=-0.041 Sum_probs=15.2
Q ss_pred hhHHHHHHHhcccCCCC
Q 024381 233 IITLFFFEILSFLGYSR 249 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg~ 249 (268)
..++..|+|+||||+|.
T Consensus 86 ~~~~~~AaLlHDiGh~P 102 (410)
T 2q14_A 86 AEAVQAAILLHDIGHGP 102 (410)
T ss_dssp HHHHHHHHHHTTTTCCT
T ss_pred HHHHHHHHHHhccCCCc
Confidence 47799999999999986
No 22
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=83.41 E-value=0.25 Score=43.61 Aligned_cols=17 Identities=12% Similarity=0.172 Sum_probs=15.3
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
.++.+++|+|||||||-
T Consensus 141 ~~~~~~~agllHDIGkl 157 (305)
T 3hc1_A 141 NPVNVYVAGLLHDVGEV 157 (305)
T ss_dssp CHHHHHHHHHTTTHHHH
T ss_pred CHHHHHHHHHHHHhhHH
Confidence 57889999999999984
No 23
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=82.78 E-value=0.85 Score=41.76 Aligned_cols=25 Identities=16% Similarity=-0.158 Sum_probs=18.7
Q ss_pred HHHhccC-chhHHHHHHHhcccCCCC
Q 024381 225 VISTYLL-LIITLFFFEILSFLGYSR 249 (268)
Q Consensus 225 ~l~~~~~-~~~~L~lA~LlHDIGKg~ 249 (268)
.+...+. ++.++..|+|+||||++.
T Consensus 89 ~ia~~l~l~~~l~~~a~LlHDiGh~P 114 (376)
T 2dqb_A 89 SIARALGLNEDLTEAIALSHDLGHPP 114 (376)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTTTCCS
T ss_pred HHHHHcCCCHHHHHHHHHHHhcCCCc
Confidence 3444443 567899999999999983
No 24
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=81.21 E-value=0.52 Score=40.93 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=15.3
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
+++.+++|+|||||||-
T Consensus 146 ~~~~~~laGLLHdiGkl 162 (281)
T 3i7a_A 146 NYDTLTLAGLVHNIGAL 162 (281)
T ss_dssp CHHHHHHHHHHTTTTHH
T ss_pred CHHHHHHHHHHHHCCHH
Confidence 57889999999999984
No 25
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis}
Probab=80.83 E-value=0.67 Score=38.67 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.9
Q ss_pred hHHHHHHHhcccCCCCCCc
Q 024381 234 ITLFFFEILSFLGYSRGQT 252 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg~g~~ 252 (268)
.+|.+|++|||||+.-..+
T Consensus 52 ~lL~~Aa~LHdIG~~I~~~ 70 (209)
T 3rf0_A 52 ALLKWAAMLHEVGLSINHS 70 (209)
T ss_dssp HHHHHHHHHTTGGGGTCST
T ss_pred HHHHHHHHHHHcccccCcc
Confidence 7899999999999875443
No 26
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=80.69 E-value=0.28 Score=43.03 Aligned_cols=17 Identities=29% Similarity=0.165 Sum_probs=14.9
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
.++.+++|+|||||||-
T Consensus 147 ~~e~a~~aGLLHDIGkl 163 (297)
T 1vqr_A 147 LSHLLVPCAMLLRLGIV 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccHH
Confidence 46789999999999984
No 27
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=74.32 E-value=0.77 Score=40.11 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=15.2
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
.++.+++|+|||||||-
T Consensus 131 ~~~~~~~agLLhdiGkl 147 (288)
T 3ljx_A 131 APKEAFTLGLLADVGRL 147 (288)
T ss_dssp CHHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHhccHH
Confidence 57889999999999984
No 28
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=73.59 E-value=0.76 Score=39.81 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=15.1
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
+++.+++|+|||||||-
T Consensus 127 ~~~~~~~agLLhdiGkl 143 (275)
T 3m1t_A 127 LPEEAFTCGILHSIGEL 143 (275)
T ss_dssp CHHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHccHH
Confidence 47789999999999985
No 29
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=71.48 E-value=1.6 Score=40.84 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.8
Q ss_pred chhHHHHHHHhcccCCC
Q 024381 232 LIITLFFFEILSFLGYS 248 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg 248 (268)
.++.+++|+|||||||-
T Consensus 304 ~~~~aflaGLLhDIGkl 320 (457)
T 3mem_A 304 LFGLAYLAGLLHNFGHL 320 (457)
T ss_dssp CHHHHHHHHHHTTTHHH
T ss_pred CHHHHHHHHHHHHhhHH
Confidence 46789999999999984
No 30
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=70.73 E-value=0.86 Score=37.90 Aligned_cols=22 Identities=0% Similarity=-0.257 Sum_probs=18.7
Q ss_pred chhHHHHHHHhcccCCCCCCcc
Q 024381 232 LIITLFFFEILSFLGYSRGQTD 253 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g~~h 253 (268)
++.-+..++|+||||+...||-
T Consensus 59 D~~~~~~~aLlHDi~E~~~GDi 80 (201)
T 2paq_A 59 NAERIALLAMYHDASEVLTGDL 80 (201)
T ss_dssp CHHHHHHHHHHTTTTHHHHCCC
T ss_pred CHHHHHHHHHhcccccccCCCC
Confidence 5667889999999999998883
No 31
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=70.63 E-value=3.1 Score=39.41 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.5
Q ss_pred hHHHHHHHhcccCCCCCC
Q 024381 234 ITLFFFEILSFLGYSRGQ 251 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg~g~ 251 (268)
.+|.+|++|||||+--..
T Consensus 361 ~lL~~Aa~LhdiG~~I~~ 378 (513)
T 1u6z_A 361 ALLRWAAMLHEVGLNINH 378 (513)
T ss_dssp HHHHHHHHHTTTTTTTCS
T ss_pred HHHHHHHHHHHccCcCCc
Confidence 799999999999996543
No 32
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=69.28 E-value=1.4 Score=38.31 Aligned_cols=16 Identities=19% Similarity=-0.056 Sum_probs=13.8
Q ss_pred hhHHHHHHHhcccCCC
Q 024381 233 IITLFFFEILSFLGYS 248 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg 248 (268)
..++.+++++|||||-
T Consensus 64 ~~~~~~~~~lHDiGK~ 79 (265)
T 3sk9_A 64 LAWAAALVGLHDLGKA 79 (265)
T ss_dssp HHHHHHHHTTTTGGGC
T ss_pred HHHHHHHHHHhhcccc
Confidence 4678888999999997
No 33
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=67.33 E-value=2.3 Score=40.29 Aligned_cols=39 Identities=5% Similarity=-0.244 Sum_probs=24.7
Q ss_pred cCCccCchhH----hHHHHHHhccC------chhHHHHHHHhcccCCCC
Q 024381 211 HGFRRRDKRS----NLLLVISTYLL------LIITLFFFEILSFLGYSR 249 (268)
Q Consensus 211 ~~yH~~d~~~----~~l~~l~~~~~------~~~~L~lA~LlHDIGKg~ 249 (268)
..||....|. .....++.++. ...+|.||++|||||+--
T Consensus 327 ~ry~~d~~ha~~V~~~a~~Lf~ql~~~~~~~~~~lL~~Aa~LhdiG~~i 375 (508)
T 3hi0_A 327 ILRARSPEHARELADWSGRTFPVFGIDETEEESRYRQAACLLADISWRA 375 (508)
T ss_dssp HHHCSCHHHHHHHHHHHHHHGGGGTCCCCHHHHHHHHHHHHHTTTTTTS
T ss_pred HHhCcCHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhHHh
Confidence 4566543442 23445555432 357899999999999864
No 34
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major}
Probab=59.96 E-value=11 Score=34.10 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=12.7
Q ss_pred hhHHHHHHHhcccCC
Q 024381 233 IITLFFFEILSFLGY 247 (268)
Q Consensus 233 ~~~L~lA~LlHDIGK 247 (268)
...+.+|||+||+|-
T Consensus 130 ~~alliAAl~HDv~H 144 (359)
T 2r8q_A 130 CYVLLVTALVHDLDH 144 (359)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcCCC
Confidence 445889999999995
No 35
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A*
Probab=59.21 E-value=16 Score=32.48 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHcCccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhh-hhh--hHHhH--hh-----cCCcc
Q 024381 146 FRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVL-LPI--QAAYL--VK-----HGFRR 215 (268)
Q Consensus 146 f~i~~~t~~~i~~~~~~l~~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~l-lPe--~~~~~--~q-----~~yH~ 215 (268)
+.++.++.+.++...-..-..+. .|+.+. .+.++++.|++..+ +|. +.+.+ .+ +.||.
T Consensus 9 ~~~~~~~~~~l~~~~Fd~~~~~~----~~~~~~--------~~~mF~~~~l~~~f~i~~~~L~~fl~~v~~~Y~~npYHN 76 (329)
T 3dyn_A 9 YLLSPETIEALRKPTFDVWLWEP----NEMLSC--------LEHMYHDLGLVRDFSINPVTLRRWLFCVHDNYRNNPFHN 76 (329)
T ss_dssp TSCCHHHHHHTTSTTCCGGGCCH----HHHHHH--------HHHHHHHTTHHHHHTCCHHHHHHHHHHHHHHSCCCSSSS
T ss_pred ccCCHHHHHHHhcCCCCcccCCc----chHHHH--------HHHHHHHCCchHhcCCCHHHHHHHHHHHHHhcCCCCCcC
Confidence 45667777766644332222333 233332 34567788888876 443 33332 12 45664
Q ss_pred ----CchhHhHH-----HHHHhccC--chhHHHHHHHhcccCC
Q 024381 216 ----RDKRSNLL-----LVISTYLL--LIITLFFFEILSFLGY 247 (268)
Q Consensus 216 ----~d~~~~~l-----~~l~~~~~--~~~~L~lA~LlHDIGK 247 (268)
.|+-..+. ..+...+. ....+.+||++||+|-
T Consensus 77 ~~Ha~dV~q~~~~~l~~~~l~~~l~~le~~alliAal~HDv~H 119 (329)
T 3dyn_A 77 FRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDH 119 (329)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHHTTTTC
T ss_pred cHHHhHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHhcCCC
Confidence 22211111 11112222 2346889999999994
No 36
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Probab=58.87 E-value=16 Score=34.84 Aligned_cols=15 Identities=27% Similarity=0.157 Sum_probs=12.6
Q ss_pred hhHHHHHHHhcccCC
Q 024381 233 IITLFFFEILSFLGY 247 (268)
Q Consensus 233 ~~~L~lA~LlHDIGK 247 (268)
...+.+|||+||+|-
T Consensus 282 ~lAlliAAl~HDvdH 296 (533)
T 3qi3_A 282 ILILMTAAICHDLDH 296 (533)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhccCC
Confidence 346889999999994
No 37
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Probab=57.01 E-value=15 Score=33.06 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=12.7
Q ss_pred hhHHHHHHHhcccCC
Q 024381 233 IITLFFFEILSFLGY 247 (268)
Q Consensus 233 ~~~L~lA~LlHDIGK 247 (268)
...+.+|||+||+|-
T Consensus 131 ~~alliAAl~HDv~H 145 (347)
T 1tbf_A 131 ILALLIAALSHDLDH 145 (347)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHccCCC
Confidence 455889999999995
No 38
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Probab=56.83 E-value=10 Score=34.53 Aligned_cols=15 Identities=13% Similarity=0.199 Sum_probs=12.6
Q ss_pred hhHHHHHHHhcccCC
Q 024381 233 IITLFFFEILSFLGY 247 (268)
Q Consensus 233 ~~~L~lA~LlHDIGK 247 (268)
...+.+|||+||+|-
T Consensus 113 ~~alliAAl~HDvdH 127 (377)
T 1f0j_A 113 ILAAIFAAAIHDVDH 127 (377)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHcCCCC
Confidence 345889999999995
No 39
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=56.74 E-value=4.8 Score=37.92 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=13.8
Q ss_pred hHHHHHHHhcccCCCC
Q 024381 234 ITLFFFEILSFLGYSR 249 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg~ 249 (268)
.++..|+|+||||-|.
T Consensus 125 ~~v~~AaLlHDIGH~P 140 (480)
T 3irh_A 125 LITLCAALLHDVGHGP 140 (480)
T ss_dssp HHHHHHHHHTTTTCCT
T ss_pred HHHHHHHHHhccCCCC
Confidence 4678999999999875
No 40
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A*
Probab=55.32 E-value=15 Score=32.95 Aligned_cols=15 Identities=7% Similarity=-0.153 Sum_probs=12.7
Q ss_pred hhHHHHHHHhcccCC
Q 024381 233 IITLFFFEILSFLGY 247 (268)
Q Consensus 233 ~~~L~lA~LlHDIGK 247 (268)
...+.+|||.||+|-
T Consensus 130 ~~alliAAl~HDvdH 144 (345)
T 3v93_A 130 CKAAAFAALTHDVCH 144 (345)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcCCC
Confidence 446899999999995
No 41
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=54.34 E-value=15 Score=33.03 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=12.6
Q ss_pred hhHHHHHHHhcccCC
Q 024381 233 IITLFFFEILSFLGY 247 (268)
Q Consensus 233 ~~~L~lA~LlHDIGK 247 (268)
...+.+||+.||+|-
T Consensus 112 ~~alliAal~HDv~H 126 (345)
T 3itu_A 112 IFALFISCMCHDLDH 126 (345)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcCCC
Confidence 346889999999995
No 42
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ...
Probab=51.84 E-value=17 Score=32.62 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=12.5
Q ss_pred hhHHHHHHHhcccCC
Q 024381 233 IITLFFFEILSFLGY 247 (268)
Q Consensus 233 ~~~L~lA~LlHDIGK 247 (268)
...+.+|||+||+|-
T Consensus 126 ~~alliAAl~HDv~H 140 (349)
T 1y2k_A 126 ILAAIFASAIHDVDH 140 (349)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhccCCC
Confidence 345889999999995
No 43
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=49.02 E-value=6.9 Score=37.29 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=19.3
Q ss_pred hHHHHHHHhcccCCCCCCccccCCccc
Q 024381 234 ITLFFFEILSFLGYSRGQTDCSRGSLY 260 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg~g~~h~~~g~~~ 260 (268)
.++..|+|+||||-|. -+|+.-++..
T Consensus 99 ~~v~~AaLlHDiGH~P-FsH~~E~~~~ 124 (528)
T 3u1n_A 99 LCVQIAGLCHDLGHGP-FSHMFDGRFI 124 (528)
T ss_dssp HHHHHHHHHTTTTCBT-TBHHHHHTHH
T ss_pred HHHHHHHHHhccCCCC-ccchhhhhhh
Confidence 4678999999999876 4666555543
No 44
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=48.49 E-value=10 Score=32.93 Aligned_cols=35 Identities=14% Similarity=0.005 Sum_probs=25.7
Q ss_pred HhccCch-hHHHHHHHhcccCCC----CCCccccCCcccc
Q 024381 227 STYLLLI-ITLFFFEILSFLGYS----RGQTDCSRGSLYP 261 (268)
Q Consensus 227 ~~~~~~~-~~L~lA~LlHDIGKg----~g~~h~~~g~~~~ 261 (268)
+++-.+| .++.|.+|+||+||- ..+--+..|..+|
T Consensus 110 iR~d~pp~dW~qLtGLiHDLGKvl~~~~epQW~vvGDTfp 149 (289)
T 2huo_A 110 IRKAHPDKDWFHLVGLLHDLGKIMALWGEPQWAVVGDTFP 149 (289)
T ss_dssp HHHHCTTCHHHHHHHHHTTGGGGGGGGTCCGGGTSSCCCB
T ss_pred HHHhCCCcchheeeeecccchhhhhhcCCCceeeecCcce
Confidence 3333445 899999999999996 2345677787777
No 45
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=46.79 E-value=8.4 Score=35.90 Aligned_cols=16 Identities=6% Similarity=-0.041 Sum_probs=14.2
Q ss_pred hHHHHHHHhcccCCCC
Q 024381 234 ITLFFFEILSFLGYSR 249 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg~ 249 (268)
.++..|+|+||||-|.
T Consensus 107 ~lv~~a~L~HDiGH~P 122 (444)
T 3bg2_A 107 AIVAAAALAHDIGNPP 122 (444)
T ss_dssp HHHHHHHHHTTTTCCT
T ss_pred HHHHHHHHhcccCCCC
Confidence 5789999999999865
No 46
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=46.79 E-value=9.9 Score=33.92 Aligned_cols=15 Identities=13% Similarity=-0.117 Sum_probs=12.7
Q ss_pred hhHHHHHHHhcccCC
Q 024381 233 IITLFFFEILSFLGY 247 (268)
Q Consensus 233 ~~~L~lA~LlHDIGK 247 (268)
...+.+|||+||+|-
T Consensus 108 ~~alliAAl~HDv~H 122 (331)
T 2our_A 108 RKGLLIACLCHDLDH 122 (331)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHccCCC
Confidence 456889999999995
No 47
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A*
Probab=46.60 E-value=24 Score=31.46 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCchhh-hhh--hHHhH--hhcCCc------c----CchhHhH---H--HHHHhccC--chhHHHHHHHh
Q 024381 185 EASLRLLWKFGLLEVL-LPI--QAAYL--VKHGFR------R----RDKRSNL---L--LVISTYLL--LIITLFFFEIL 242 (268)
Q Consensus 185 ~~~l~~m~~~glL~~l-lPe--~~~~~--~q~~yH------~----~d~~~~~---l--~~l~~~~~--~~~~L~lA~Ll 242 (268)
.-++.++.+.|++..+ +|. +.+.+ .+..|| . .||-..+ + ..+...+. ....+.+||+.
T Consensus 35 ~~~~~lf~~~~l~~~f~i~~~~L~~fl~~v~~~Y~~~npYHN~~Ha~dV~q~~~~~l~~~~l~~~l~~~e~~all~Aal~ 114 (338)
T 3ecm_A 35 YLGLKMFARFGICEFLHCSESTLRSWLQIIEANYHSSNPYHNSTHSADVLHATAYFLSKERIKETLDPIDEVAALIAATI 114 (338)
T ss_dssp HHHHHHHHHTTCHHHHTCCHHHHHHHHHHHHHTSCTTSSSSSHHHHHHHHHHHHHHHTSHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHhcCCCHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHH
Confidence 3567788999998887 553 33333 234554 3 1221111 1 11222233 24468899999
Q ss_pred cccCC
Q 024381 243 SFLGY 247 (268)
Q Consensus 243 HDIGK 247 (268)
||+|-
T Consensus 115 HD~~H 119 (338)
T 3ecm_A 115 HDVDH 119 (338)
T ss_dssp TTTTC
T ss_pred hccCC
Confidence 99994
No 48
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=45.35 E-value=27 Score=33.80 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCchhh-hhh--hHHhHh--h-----cCCcc----CchhHhHHHHHHh------ccC--chhHHHHHHHh
Q 024381 185 EASLRLLWKFGLLEVL-LPI--QAAYLV--K-----HGFRR----RDKRSNLLLVIST------YLL--LIITLFFFEIL 242 (268)
Q Consensus 185 ~~~l~~m~~~glL~~l-lPe--~~~~~~--q-----~~yH~----~d~~~~~l~~l~~------~~~--~~~~L~lA~Ll 242 (268)
..++.++.+.|+++.+ +|. +.+.+. + +.||. .|+- ++...++. .+. ....+++|+|.
T Consensus 404 ~~~~~~f~~~~~~~~~~i~~~~l~~fl~~v~~~y~~~pyHN~~Ha~dv~-q~~~~~~~~~~~~~~~~~~e~~a~~~aa~~ 482 (691)
T 3ibj_A 404 MAILSMLQDMNFINNYKIDCPTLARFCLMVKKGYRDPPYHNWMHAFSVS-HFCYLLYKNLELTNYLEDIEIFALFISCMC 482 (691)
T ss_dssp HHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHTSBCCSSSBHHHHHHHH-HHHHHHHHHHTGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHhcCCCHHHHHHHHHHHHhcCCCCCCcCcHHHHHHH-HHHHHHHhccchhhhCCHHHHHHHHHHHHH
Confidence 3467778889998877 332 333321 2 44554 2221 11122222 122 23458999999
Q ss_pred cccCCC
Q 024381 243 SFLGYS 248 (268)
Q Consensus 243 HDIGKg 248 (268)
||+|-+
T Consensus 483 HD~~H~ 488 (691)
T 3ibj_A 483 HDLDHR 488 (691)
T ss_dssp TTTTCC
T ss_pred ccCCCC
Confidence 999864
No 49
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A*
Probab=44.30 E-value=16 Score=32.84 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=12.9
Q ss_pred hhHHHHHHHhcccCCC
Q 024381 233 IITLFFFEILSFLGYS 248 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg 248 (268)
...+.+|||+||+|-+
T Consensus 113 ~~alliAAl~HDv~Hp 128 (353)
T 1zkl_A 113 ILLSLIAAATHDLDHP 128 (353)
T ss_dssp HHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHhccCCC
Confidence 3457899999999953
No 50
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=42.90 E-value=28 Score=34.96 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.1
Q ss_pred hhHHHHHHHhcccCCC
Q 024381 233 IITLFFFEILSFLGYS 248 (268)
Q Consensus 233 ~~~L~lA~LlHDIGKg 248 (268)
...+.+|+|+||+|-+
T Consensus 646 ~~a~~~aa~~HD~~Hp 661 (878)
T 3bjc_A 646 ILALLIAALSHDLDHR 661 (878)
T ss_dssp HHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHccCCCC
Confidence 4458899999999953
No 51
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=42.85 E-value=10 Score=35.37 Aligned_cols=16 Identities=6% Similarity=-0.039 Sum_probs=13.9
Q ss_pred hHHHHHHHhcccCCCC
Q 024381 234 ITLFFFEILSFLGYSR 249 (268)
Q Consensus 234 ~~L~lA~LlHDIGKg~ 249 (268)
.++..|+|+||||-|.
T Consensus 100 ~~v~~a~L~HDiGH~P 115 (451)
T 2pgs_A 100 MVVQSACLAHDIGNPP 115 (451)
T ss_dssp HHHHHHHHHTTTTCCT
T ss_pred HHHHHHHHhhccCCCC
Confidence 3789999999999875
No 52
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=42.58 E-value=34 Score=31.49 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=12.0
Q ss_pred hHHHHHHHhcccCC
Q 024381 234 ITLFFFEILSFLGY 247 (268)
Q Consensus 234 ~~L~lA~LlHDIGK 247 (268)
..+++|||.||+|-
T Consensus 159 lAlliAAl~HDvdH 172 (420)
T 1so2_A 159 MALYVAAAMHDYDH 172 (420)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhcCCC
Confidence 35889999999995
No 53
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A*
Probab=41.57 E-value=32 Score=31.76 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCchhh-hhh--hHHhH--hhcCCc------c----CchhHhHHHHHHhc------cC--chhHHHHHHHh
Q 024381 186 ASLRLLWKFGLLEVL-LPI--QAAYL--VKHGFR------R----RDKRSNLLLVISTY------LL--LIITLFFFEIL 242 (268)
Q Consensus 186 ~~l~~m~~~glL~~l-lPe--~~~~~--~q~~yH------~----~d~~~~~l~~l~~~------~~--~~~~L~lA~Ll 242 (268)
-++.++.+.|++..+ +|. +.+.+ .+..|| . .||- +....++.. +. ....+.+|||+
T Consensus 123 l~~~iF~~~~L~~~f~I~~~~L~~FL~~ve~~Y~~~~pYHN~~HA~dV~-Q~~~~ll~~~~l~~~ls~le~lalliAAl~ 201 (421)
T 3g4g_A 123 IMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVV-QSTHVLLSTPALEAVFTDLEILAAIFASAI 201 (421)
T ss_dssp HHHHHHHHTTHHHHHTCCHHHHHHHHHHHHHTSCSSCSSSSHHHHHHHH-HHHHHHHTCGGGTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHhhcCCCHHHHHHHHHHHHHcccCCCCCcCcHHHhHHH-HHHHHHHhhhhhhhhcchHHHHHHHHHHHH
Confidence 356778899998887 554 33332 234554 2 1221 111222221 11 23468899999
Q ss_pred cccCC
Q 024381 243 SFLGY 247 (268)
Q Consensus 243 HDIGK 247 (268)
||+|-
T Consensus 202 HDvdH 206 (421)
T 3g4g_A 202 HDVDH 206 (421)
T ss_dssp TTTTC
T ss_pred hcCCC
Confidence 99994
No 54
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=36.59 E-value=7.3 Score=31.36 Aligned_cols=22 Identities=9% Similarity=-0.165 Sum_probs=16.8
Q ss_pred chhHHHHHHHhcccCCCCCCcc
Q 024381 232 LIITLFFFEILSFLGYSRGQTD 253 (268)
Q Consensus 232 ~~~~L~lA~LlHDIGKg~g~~h 253 (268)
++..+.+++|+||++-...||.
T Consensus 59 d~~~v~~~aLlHD~~E~~~GD~ 80 (177)
T 2cqz_A 59 DVEKALKMAIVHDLAEAIITDI 80 (177)
T ss_dssp CHHHHHHHHHHTTTTHHHHCCC
T ss_pred CHHHHHHHHHHhchHHHHcCCC
Confidence 4566779999999986666664
No 55
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=31.65 E-value=21 Score=29.33 Aligned_cols=16 Identities=19% Similarity=0.671 Sum_probs=13.5
Q ss_pred ceeecCCCCe--EeecCC
Q 024381 92 GLMFDPYAKI--IYDYIG 107 (268)
Q Consensus 92 Ama~~~~~~~--l~Dp~~ 107 (268)
||||||...+ +.||||
T Consensus 57 A~Aw~P~s~~~YmFDPfG 74 (204)
T 4ekf_A 57 AFAWNPRSKTCYLFEPFG 74 (204)
T ss_dssp EEEEETTTTEEEEECTBT
T ss_pred EeEecCCcceEEEeCCCC
Confidence 7899998765 679998
No 56
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=28.55 E-value=87 Score=24.74 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=16.8
Q ss_pred CCCCceEEEeCC-CHHHHHHHhcc
Q 024381 4 RIPKDFDIITSA-ELKEVVRVFSQ 26 (268)
Q Consensus 4 ~~~~D~Di~t~~-~~~~~~~~f~~ 26 (268)
+.|+||||.++. +.+.+.+.|..
T Consensus 51 ~~~~DIDi~i~~~da~~~~~~L~~ 74 (169)
T 2fcl_A 51 VEVHDIDIQTDEEGAYEIERIFSE 74 (169)
T ss_dssp CCCCSEEEEECHHHHHHHHHHTGG
T ss_pred CCCCccEEEecccCHHHHHHHHHH
Confidence 579999999865 45666666654
No 57
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.97 E-value=92 Score=24.27 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=43.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHcCccccCCCHHHHHHHHHHH--HhCC---CHHHHHHHHHHcCCchhhh
Q 024381 137 AIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM--LAYG---SAEASLRLLWKFGLLEVLL 201 (268)
Q Consensus 137 a~Rfaa~~gf~i~~~t~~~i~~~~~~l~~~~~eRi~~El~ki--L~~~---~~~~~l~~m~~~glL~~ll 201 (268)
+-.+..+.|+++.+.=...+......=..++.+.|..++.+- ...- ...+.|+.|.+.|++..+-
T Consensus 20 ~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 20 FKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 334456679999876555444332222457999999998765 2222 2378999999999998874
No 58
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2
Probab=24.95 E-value=26 Score=31.60 Aligned_cols=15 Identities=7% Similarity=0.202 Sum_probs=12.7
Q ss_pred hhHHHHHHHhcccCC
Q 024381 233 IITLFFFEILSFLGY 247 (268)
Q Consensus 233 ~~~L~lA~LlHDIGK 247 (268)
...+.+|||+||+|-
T Consensus 112 ~~alliAAl~HDv~H 126 (365)
T 1taz_A 112 LLAIIFAAAIHDYEH 126 (365)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcCCC
Confidence 455889999999995
No 59
>1gxi_E Photosystem I reaction center subunit IV; photosynthesis, PSAE SUB-UNIT, thylakoid; NMR {Synechocystis SP} SCOP: b.34.4.2 PDB: 1pse_A 1psf_A
Probab=22.10 E-value=25 Score=23.98 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=17.6
Q ss_pred hcccCCCCCCccccCCcccccc
Q 024381 242 LSFLGYSRGQTDCSRGSLYPCL 263 (268)
Q Consensus 242 lHDIGKg~g~~h~~~g~~~~~~ 263 (268)
+-|||+--.-|.+ |+.||++
T Consensus 18 yn~vGtVasVD~s--gi~YPVv 37 (73)
T 1gxi_E 18 YGDVGTVASVEKS--GILYPVI 37 (73)
T ss_dssp TTEEECBCCTTTC--CSSSCEE
T ss_pred ecCcceEEEEcCC--CCEeeEE
Confidence 6789999999997 9999986
No 60
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=22.07 E-value=11 Score=25.89 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=31.4
Q ss_pred HHHHhC-CCCCHHHHHHHHHcCcccc---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchh
Q 024381 140 IAARLG-FRFSRETAHFVKHLSPSIL---KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEV 199 (268)
Q Consensus 140 faa~~g-f~i~~~t~~~i~~~~~~l~---~~~~eRi~~El~kiL~~~~~~~~l~~m~~~glL~~ 199 (268)
|+..|+ |.+.++..+.|-....... .++...|..++- +......+.|..|.+.|++..
T Consensus 2 ~~~~~~~~~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg--vs~~tV~~~L~~L~~~G~I~~ 63 (77)
T 1qgp_A 2 LSSHFQELSIYQDQEQRILKFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYSLAKKGKLQK 63 (77)
T ss_dssp CHHHHTCTHHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC--CCHHHHHHHHHHHHHHTSEEE
T ss_pred hhHhhcccCCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEe
Confidence 456666 7776666444433222222 344455555443 222223678888988888754
Done!