Query 024384
Match_columns 268
No_of_seqs 154 out of 334
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 04:09:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.5 1E-13 2.2E-18 101.2 7.6 62 85-149 3-64 (65)
2 PF00170 bZIP_1: bZIP transcri 99.4 1.8E-12 3.9E-17 94.6 7.5 61 85-148 3-63 (64)
3 PF07716 bZIP_2: Basic region 99.2 1.1E-10 2.3E-15 83.3 6.9 46 85-131 3-48 (54)
4 KOG0837 Transcriptional activa 98.8 1.2E-08 2.7E-13 94.7 8.0 66 86-161 205-270 (279)
5 KOG4005 Transcription factor X 98.7 6.5E-08 1.4E-12 89.6 8.4 48 84-131 66-113 (292)
6 KOG4343 bZIP transcription fac 98.6 4.9E-08 1.1E-12 98.0 7.0 63 81-153 275-337 (655)
7 KOG4571 Activating transcripti 98.6 2E-07 4.3E-12 87.6 10.1 66 85-153 225-290 (294)
8 KOG3584 cAMP response element 98.6 4.3E-08 9.4E-13 92.6 5.4 51 82-132 286-336 (348)
9 KOG0709 CREB/ATF family transc 98.4 1.5E-07 3.3E-12 92.8 4.3 73 81-156 245-317 (472)
10 PF03131 bZIP_Maf: bZIP Maf tr 97.9 5.3E-08 1.2E-12 76.1 -8.9 49 83-131 26-74 (92)
11 KOG3119 Basic region leucine z 97.5 0.00029 6.4E-09 64.9 7.5 58 89-149 196-253 (269)
12 KOG3863 bZIP transcription fac 97.1 0.0016 3.4E-08 66.8 7.5 66 87-155 490-555 (604)
13 KOG4196 bZIP transcription fac 96.8 0.0084 1.8E-07 51.5 9.0 64 84-157 50-113 (135)
14 TIGR02449 conserved hypothetic 96.4 0.017 3.8E-07 44.0 6.9 53 108-163 7-59 (65)
15 PRK13922 rod shape-determining 95.1 0.1 2.2E-06 47.2 7.9 49 102-150 63-111 (276)
16 PF06005 DUF904: Protein of un 94.7 0.16 3.4E-06 39.1 6.8 49 110-161 20-68 (72)
17 PF06156 DUF972: Protein of un 94.4 0.2 4.4E-06 41.1 7.3 47 108-157 8-54 (107)
18 TIGR00219 mreC rod shape-deter 94.2 0.13 2.9E-06 47.7 6.7 43 108-150 66-109 (283)
19 PRK13169 DNA replication intia 92.9 0.52 1.1E-05 39.1 7.3 46 108-156 8-53 (110)
20 PF04102 SlyX: SlyX; InterPro 92.5 0.9 1.9E-05 34.2 7.6 48 107-157 3-50 (69)
21 PRK00295 hypothetical protein; 92.2 1 2.2E-05 34.1 7.5 48 107-157 4-51 (68)
22 PRK10884 SH3 domain-containing 91.9 0.83 1.8E-05 41.2 7.9 25 107-131 124-148 (206)
23 PRK10884 SH3 domain-containing 91.7 1.4 3E-05 39.8 9.1 67 90-156 82-156 (206)
24 PRK04325 hypothetical protein; 91.6 1.2 2.7E-05 34.2 7.5 48 107-157 8-55 (74)
25 PF08826 DMPK_coil: DMPK coile 91.3 1.1 2.4E-05 33.8 6.8 43 112-154 15-61 (61)
26 PRK04406 hypothetical protein; 91.3 1.4 2.9E-05 34.2 7.5 49 107-158 10-58 (75)
27 KOG1414 Transcriptional activa 91.3 0.031 6.6E-07 54.1 -1.9 61 83-145 281-341 (395)
28 PRK02793 phi X174 lysis protei 91.3 1.4 3.1E-05 33.7 7.5 49 107-158 7-55 (72)
29 PRK02119 hypothetical protein; 90.8 1.6 3.5E-05 33.5 7.5 49 106-157 7-55 (73)
30 PF07106 TBPIP: Tat binding pr 90.7 1.5 3.2E-05 37.2 7.9 48 110-157 81-134 (169)
31 PRK15422 septal ring assembly 90.6 1.4 3E-05 35.1 7.0 53 110-162 20-76 (79)
32 PHA03155 hypothetical protein; 90.5 1.3 2.7E-05 37.5 7.1 49 109-157 9-72 (115)
33 PRK13729 conjugal transfer pil 90.5 0.72 1.6E-05 46.7 6.7 58 99-156 66-128 (475)
34 PF06156 DUF972: Protein of un 90.5 1.3 2.7E-05 36.5 7.0 44 107-153 14-57 (107)
35 PF12808 Mto2_bdg: Micro-tubul 90.4 0.85 1.8E-05 33.6 5.3 46 105-153 1-50 (52)
36 PF04880 NUDE_C: NUDE protein, 90.3 0.46 1E-05 42.0 4.6 46 110-155 2-47 (166)
37 PRK00736 hypothetical protein; 90.3 2 4.4E-05 32.5 7.5 48 107-157 4-51 (68)
38 COG3074 Uncharacterized protei 89.8 1.7 3.7E-05 34.4 6.9 53 110-162 20-76 (79)
39 PHA03162 hypothetical protein; 89.8 0.87 1.9E-05 39.4 5.7 29 104-132 9-37 (135)
40 PRK00888 ftsB cell division pr 89.7 1.3 2.7E-05 36.0 6.4 27 104-130 30-56 (105)
41 COG1792 MreC Cell shape-determ 89.7 1 2.2E-05 42.1 6.7 48 103-150 61-108 (284)
42 PF05812 Herpes_BLRF2: Herpesv 89.6 2.2 4.8E-05 36.1 7.9 28 106-133 1-28 (118)
43 KOG3119 Basic region leucine z 88.6 1.9 4.2E-05 40.0 7.6 60 98-160 191-250 (269)
44 PRK13169 DNA replication intia 88.3 2.2 4.7E-05 35.5 6.9 44 107-153 14-57 (110)
45 PRK00846 hypothetical protein; 87.8 4 8.6E-05 32.1 7.8 51 106-159 11-61 (77)
46 PF08232 Striatin: Striatin fa 87.8 1.9 4E-05 36.4 6.3 47 103-152 27-73 (134)
47 COG4467 Regulator of replicati 87.7 2.5 5.4E-05 35.7 6.9 46 109-157 9-54 (114)
48 PF08172 CASP_C: CASP C termin 87.6 2.5 5.5E-05 39.1 7.7 51 100-153 85-135 (248)
49 PF12718 Tropomyosin_1: Tropom 87.5 3.2 7E-05 35.3 7.7 50 107-156 13-66 (143)
50 TIGR03752 conj_TIGR03752 integ 87.0 1.6 3.4E-05 44.3 6.4 24 109-132 74-97 (472)
51 TIGR03752 conj_TIGR03752 integ 86.9 2.5 5.4E-05 42.9 7.7 49 109-157 81-141 (472)
52 PF04728 LPP: Lipoprotein leuc 86.3 4.8 0.0001 30.2 7.1 49 108-159 3-51 (56)
53 COG2433 Uncharacterized conser 86.2 2.5 5.5E-05 44.3 7.5 43 108-150 436-492 (652)
54 KOG4343 bZIP transcription fac 85.8 1.2 2.6E-05 46.2 5.0 67 76-145 274-343 (655)
55 PF10805 DUF2730: Protein of u 85.4 5.9 0.00013 32.0 7.8 51 106-156 33-89 (106)
56 KOG1318 Helix loop helix trans 84.9 8 0.00017 38.8 10.0 69 85-153 227-318 (411)
57 KOG0977 Nuclear envelope prote 84.7 3.3 7.2E-05 42.7 7.5 47 110-159 150-196 (546)
58 KOG0977 Nuclear envelope prote 84.6 3 6.4E-05 43.1 7.1 53 99-151 33-104 (546)
59 PRK14872 rod shape-determining 84.5 2.8 6.1E-05 40.7 6.6 42 108-149 57-98 (337)
60 PF11932 DUF3450: Protein of u 84.2 5.6 0.00012 35.8 8.0 30 103-132 51-80 (251)
61 PF02183 HALZ: Homeobox associ 84.2 4.9 0.00011 28.5 6.0 41 113-156 3-43 (45)
62 COG1579 Zn-ribbon protein, pos 83.9 6.7 0.00015 36.6 8.5 44 89-132 33-76 (239)
63 PRK00888 ftsB cell division pr 83.8 5.3 0.00012 32.4 6.9 37 109-148 28-64 (105)
64 COG4026 Uncharacterized protei 83.8 4.7 0.0001 38.3 7.4 47 102-151 157-203 (290)
65 COG4942 Membrane-bound metallo 83.4 5.7 0.00012 39.9 8.3 46 87-132 38-83 (420)
66 PF11559 ADIP: Afadin- and alp 82.6 12 0.00026 31.2 8.8 46 87-132 45-90 (151)
67 KOG1414 Transcriptional activa 82.6 0.061 1.3E-06 52.1 -5.5 48 84-131 151-202 (395)
68 PF09726 Macoilin: Transmembra 82.3 2.9 6.3E-05 44.0 6.1 21 111-131 548-568 (697)
69 PF13747 DUF4164: Domain of un 82.3 9.1 0.0002 30.4 7.6 70 86-158 10-79 (89)
70 PF08614 ATG16: Autophagy prot 82.2 9.2 0.0002 33.4 8.3 27 106-132 114-140 (194)
71 KOG4797 Transcriptional regula 81.7 6.9 0.00015 33.3 7.0 32 112-146 64-95 (123)
72 PRK11637 AmiB activator; Provi 81.5 8.9 0.00019 37.1 8.7 31 101-131 68-98 (428)
73 PF07926 TPR_MLP1_2: TPR/MLP1/ 81.3 21 0.00045 29.5 9.7 55 97-151 17-71 (132)
74 PF14197 Cep57_CLD_2: Centroso 81.0 9.8 0.00021 29.1 7.1 38 115-152 26-67 (69)
75 PRK09039 hypothetical protein; 80.9 13 0.00028 35.7 9.5 10 147-156 173-182 (343)
76 PF04977 DivIC: Septum formati 80.8 4.1 8.9E-05 29.7 4.8 28 104-131 20-47 (80)
77 PF12325 TMF_TATA_bd: TATA ele 80.4 9.2 0.0002 32.1 7.3 17 140-156 69-85 (120)
78 PF05700 BCAS2: Breast carcino 79.8 9.6 0.00021 34.2 7.8 23 109-131 137-159 (221)
79 TIGR00219 mreC rod shape-deter 79.8 8.5 0.00019 35.9 7.7 49 109-157 60-109 (283)
80 PF11932 DUF3450: Protein of u 79.6 19 0.00041 32.5 9.6 25 107-131 41-65 (251)
81 TIGR02894 DNA_bind_RsfA transc 79.5 17 0.00037 32.4 9.0 47 103-152 106-152 (161)
82 PRK11637 AmiB activator; Provi 79.3 13 0.00029 35.9 9.1 35 92-126 182-216 (428)
83 PF09726 Macoilin: Transmembra 79.2 20 0.00043 38.0 10.9 68 97-165 576-662 (697)
84 PF06005 DUF904: Protein of un 78.9 16 0.00035 28.2 7.7 17 135-151 35-51 (72)
85 PF01166 TSC22: TSC-22/dip/bun 78.9 3.5 7.6E-05 31.3 3.9 30 115-147 14-43 (59)
86 PF03993 DUF349: Domain of Unk 78.7 22 0.00047 25.8 8.1 66 96-163 8-73 (77)
87 PF03962 Mnd1: Mnd1 family; I 78.6 15 0.00033 32.5 8.6 12 137-148 115-126 (188)
88 PF14077 WD40_alt: Alternative 78.3 1.9 4.2E-05 31.5 2.3 23 107-129 17-39 (48)
89 COG2900 SlyX Uncharacterized p 78.0 16 0.00035 28.8 7.5 48 107-157 7-54 (72)
90 COG1579 Zn-ribbon protein, pos 77.8 13 0.00029 34.6 8.2 12 210-221 193-204 (239)
91 PF10805 DUF2730: Protein of u 77.6 18 0.00038 29.3 8.0 46 105-153 46-93 (106)
92 PF04350 PilO: Pilus assembly 77.0 2.4 5.1E-05 34.0 2.8 24 108-131 23-46 (144)
93 PF06785 UPF0242: Uncharacteri 77.0 8.4 0.00018 38.3 6.9 29 104-132 123-151 (401)
94 PF09304 Cortex-I_coil: Cortex 77.0 31 0.00066 29.0 9.3 58 90-150 19-76 (107)
95 KOG4005 Transcription factor X 76.9 14 0.00031 35.3 8.2 69 82-152 68-145 (292)
96 PF01166 TSC22: TSC-22/dip/bun 76.8 4.4 9.6E-05 30.8 4.0 25 107-131 20-44 (59)
97 PF07798 DUF1640: Protein of u 76.6 12 0.00026 32.3 7.2 24 109-132 74-97 (177)
98 PF13863 DUF4200: Domain of un 76.4 17 0.00036 29.0 7.5 45 89-133 62-106 (126)
99 PF00038 Filament: Intermediat 76.2 29 0.00062 31.6 9.8 28 105-132 220-247 (312)
100 PRK13922 rod shape-determining 76.1 26 0.00057 31.7 9.5 44 113-156 67-110 (276)
101 PF01486 K-box: K-box region; 76.0 7.2 0.00016 30.7 5.2 34 98-131 61-98 (100)
102 PF12711 Kinesin-relat_1: Kine 75.9 13 0.00028 30.0 6.6 44 112-155 21-67 (86)
103 KOG1853 LIS1-interacting prote 75.9 20 0.00043 34.7 9.0 10 137-146 96-105 (333)
104 PF04340 DUF484: Protein of un 75.9 14 0.0003 32.7 7.6 23 111-133 43-65 (225)
105 PF14257 DUF4349: Domain of un 75.5 8.2 0.00018 34.8 6.1 21 136-156 173-193 (262)
106 PF11559 ADIP: Afadin- and alp 75.2 27 0.00058 29.0 8.7 22 107-128 79-100 (151)
107 PF07888 CALCOCO1: Calcium bin 75.1 18 0.00039 37.5 9.1 65 92-156 155-223 (546)
108 PF08614 ATG16: Autophagy prot 75.1 36 0.00078 29.7 9.8 31 102-132 124-154 (194)
109 PRK10803 tol-pal system protei 74.9 11 0.00024 34.7 6.9 28 105-132 58-85 (263)
110 PF10186 Atg14: UV radiation r 74.9 23 0.0005 31.3 8.7 17 140-156 127-143 (302)
111 PF14389 Lzipper-MIP1: Leucine 74.4 28 0.00061 27.4 8.2 23 134-156 63-85 (88)
112 PRK10963 hypothetical protein; 74.3 12 0.00027 33.5 6.9 18 115-132 44-61 (223)
113 PRK11546 zraP zinc resistance 74.1 23 0.00049 30.9 8.2 63 97-159 50-116 (143)
114 KOG4196 bZIP transcription fac 74.1 11 0.00023 32.8 6.1 23 138-160 87-109 (135)
115 PRK15178 Vi polysaccharide exp 73.9 11 0.00024 37.9 7.0 70 88-157 254-339 (434)
116 PRK09174 F0F1 ATP synthase sub 73.8 30 0.00064 31.1 9.1 47 86-132 83-129 (204)
117 PF06818 Fez1: Fez1; InterPro 73.4 9.7 0.00021 34.9 6.0 26 137-162 136-161 (202)
118 PF07106 TBPIP: Tat binding pr 73.0 21 0.00046 30.3 7.7 19 135-153 119-137 (169)
119 KOG0709 CREB/ATF family transc 73.0 6.8 0.00015 39.9 5.4 61 82-142 250-320 (472)
120 PF07989 Microtub_assoc: Micro 72.5 21 0.00045 27.7 6.8 22 110-131 2-23 (75)
121 PF13851 GAS: Growth-arrest sp 72.2 31 0.00067 30.8 8.8 46 87-132 72-117 (201)
122 PF14817 HAUS5: HAUS augmin-li 71.0 20 0.00044 37.6 8.4 23 110-132 81-103 (632)
123 PF10224 DUF2205: Predicted co 70.7 41 0.00089 26.7 8.2 42 110-151 18-63 (80)
124 PF03980 Nnf1: Nnf1 ; InterPr 70.5 8.9 0.00019 30.4 4.6 28 105-132 77-104 (109)
125 PRK09039 hypothetical protein; 70.3 19 0.00041 34.6 7.5 23 109-131 138-160 (343)
126 KOG0963 Transcription factor/C 69.9 21 0.00045 37.7 8.2 52 95-146 304-358 (629)
127 KOG2391 Vacuolar sorting prote 69.7 24 0.00052 35.0 8.1 47 102-151 219-265 (365)
128 PF05278 PEARLI-4: Arabidopsis 69.1 39 0.00084 32.3 9.2 24 108-131 207-230 (269)
129 PF04111 APG6: Autophagy prote 68.8 20 0.00044 34.0 7.3 27 105-131 61-87 (314)
130 PF07767 Nop53: Nop53 (60S rib 68.3 37 0.00081 32.6 9.1 45 86-130 275-322 (387)
131 PF04977 DivIC: Septum formati 68.3 21 0.00046 25.8 5.9 34 108-144 17-50 (80)
132 PF10211 Ax_dynein_light: Axon 68.2 57 0.0012 28.9 9.6 23 110-132 122-144 (189)
133 PRK13454 F0F1 ATP synthase sub 67.9 56 0.0012 28.5 9.3 46 87-132 62-107 (181)
134 COG2919 Septum formation initi 67.7 21 0.00045 29.3 6.3 41 109-152 51-91 (117)
135 PF06785 UPF0242: Uncharacteri 67.4 27 0.00059 34.8 8.0 65 84-152 72-154 (401)
136 PF15188 CCDC-167: Coiled-coil 67.2 26 0.00057 28.2 6.6 50 107-156 4-60 (85)
137 COG1196 Smc Chromosome segrega 67.1 27 0.00059 38.4 8.7 63 88-154 220-282 (1163)
138 TIGR00606 rad50 rad50. This fa 66.9 30 0.00065 38.5 9.1 64 93-156 842-905 (1311)
139 TIGR02209 ftsL_broad cell divi 66.6 22 0.00048 26.5 5.8 27 105-131 28-54 (85)
140 PF09738 DUF2051: Double stran 66.4 29 0.00063 33.3 7.9 72 84-155 89-170 (302)
141 PF11382 DUF3186: Protein of u 66.3 18 0.0004 34.1 6.5 23 110-132 34-56 (308)
142 PF05308 Mito_fiss_reg: Mitoch 66.1 7.7 0.00017 36.2 3.9 33 121-156 114-146 (253)
143 PF09403 FadA: Adhesion protei 66.1 27 0.00059 29.6 6.8 43 88-132 34-76 (126)
144 PF12325 TMF_TATA_bd: TATA ele 65.8 62 0.0013 27.2 8.8 18 139-156 96-113 (120)
145 KOG0288 WD40 repeat protein Ti 65.7 31 0.00066 35.2 8.1 26 106-131 46-71 (459)
146 PF15058 Speriolin_N: Sperioli 65.7 16 0.00034 33.6 5.7 37 111-151 8-44 (200)
147 cd07624 BAR_SNX7_30 The Bin/Am 65.6 24 0.00051 31.1 6.7 26 98-123 113-138 (200)
148 PF08581 Tup_N: Tup N-terminal 65.5 39 0.00085 26.6 7.1 41 109-149 26-74 (79)
149 PF02403 Seryl_tRNA_N: Seryl-t 65.3 60 0.0013 25.4 8.3 18 136-153 71-88 (108)
150 PF10186 Atg14: UV radiation r 65.3 55 0.0012 29.0 9.0 50 102-154 57-106 (302)
151 PRK09413 IS2 repressor TnpA; R 65.2 27 0.00057 28.3 6.4 29 119-150 75-103 (121)
152 TIGR02449 conserved hypothetic 65.2 39 0.00085 25.9 6.9 35 112-146 25-60 (65)
153 PRK10803 tol-pal system protei 65.0 40 0.00087 31.1 8.3 24 109-132 55-78 (263)
154 KOG4348 Adaptor protein CMS/SE 64.9 19 0.00041 37.2 6.6 49 105-159 566-617 (627)
155 PF06305 DUF1049: Protein of u 64.8 6.5 0.00014 28.3 2.5 16 105-120 52-67 (68)
156 TIGR02894 DNA_bind_RsfA transc 64.7 27 0.00058 31.1 6.8 42 111-155 100-141 (161)
157 CHL00118 atpG ATP synthase CF0 64.4 75 0.0016 26.8 9.2 46 87-132 53-98 (156)
158 PRK05759 F0F1 ATP synthase sub 64.2 79 0.0017 26.1 9.2 46 87-132 35-80 (156)
159 COG4026 Uncharacterized protei 64.1 29 0.00063 33.1 7.2 26 107-132 134-159 (290)
160 PF07558 Shugoshin_N: Shugoshi 64.0 7.2 0.00016 27.6 2.6 42 88-130 2-43 (46)
161 PF09304 Cortex-I_coil: Cortex 63.7 49 0.0011 27.8 7.8 61 96-156 4-75 (107)
162 KOG0804 Cytoplasmic Zn-finger 63.7 47 0.001 34.2 9.0 43 90-132 367-413 (493)
163 PF05791 Bacillus_HBL: Bacillu 63.5 55 0.0012 28.7 8.5 62 102-163 104-166 (184)
164 PRK14474 F0F1 ATP synthase sub 63.5 61 0.0013 29.8 9.1 46 87-132 36-81 (250)
165 PF09730 BicD: Microtubule-ass 63.5 24 0.00051 37.8 7.2 36 110-145 71-110 (717)
166 PF07820 TraC: TraC-like prote 63.5 12 0.00025 30.7 4.0 52 108-159 2-63 (92)
167 PF10458 Val_tRNA-synt_C: Valy 63.3 43 0.00093 24.7 6.7 26 107-132 3-28 (66)
168 PF00170 bZIP_1: bZIP transcri 63.3 26 0.00057 25.4 5.5 24 108-131 33-56 (64)
169 PF05377 FlaC_arch: Flagella a 63.2 50 0.0011 24.8 6.9 22 110-131 9-30 (55)
170 PF00038 Filament: Intermediat 63.0 54 0.0012 29.8 8.7 40 110-152 211-250 (312)
171 PF05278 PEARLI-4: Arabidopsis 62.5 65 0.0014 30.8 9.3 23 134-156 216-238 (269)
172 PF10473 CENP-F_leu_zip: Leuci 62.5 79 0.0017 27.4 9.1 40 92-131 36-75 (140)
173 PF05266 DUF724: Protein of un 62.4 42 0.00091 30.0 7.7 31 90-120 92-122 (190)
174 PF02183 HALZ: Homeobox associ 62.1 33 0.00072 24.3 5.6 35 111-148 8-42 (45)
175 TIGR02977 phageshock_pspA phag 62.0 73 0.0016 28.4 9.2 40 107-149 98-137 (219)
176 KOG0804 Cytoplasmic Zn-finger 61.3 38 0.00082 34.9 7.9 33 94-131 328-360 (493)
177 PF11544 Spc42p: Spindle pole 61.2 21 0.00045 28.4 4.9 27 108-134 12-38 (76)
178 TIGR03185 DNA_S_dndD DNA sulfu 61.2 57 0.0012 33.5 9.3 29 136-164 266-295 (650)
179 PRK15396 murein lipoprotein; P 60.9 48 0.001 26.2 6.9 48 109-159 26-73 (78)
180 COG1792 MreC Cell shape-determ 60.7 36 0.00077 32.0 7.2 45 115-159 66-110 (284)
181 PF05103 DivIVA: DivIVA protei 60.6 5.3 0.00011 31.8 1.6 25 108-132 25-49 (131)
182 PRK13182 racA polar chromosome 60.5 44 0.00094 29.6 7.4 52 106-157 90-143 (175)
183 PRK13455 F0F1 ATP synthase sub 60.4 91 0.002 26.9 9.2 46 87-132 58-103 (184)
184 COG3167 PilO Tfp pilus assembl 60.4 28 0.0006 32.3 6.2 54 105-165 46-99 (211)
185 PRK07352 F0F1 ATP synthase sub 60.2 92 0.002 26.6 9.1 46 87-132 50-95 (174)
186 PRK08032 fliD flagellar cappin 59.9 40 0.00086 33.5 7.8 49 107-155 412-461 (462)
187 PRK14127 cell division protein 59.4 29 0.00064 28.9 5.8 22 135-156 47-68 (109)
188 PF13935 Ead_Ea22: Ead/Ea22-li 59.2 52 0.0011 27.7 7.3 28 103-130 76-105 (139)
189 PF14335 DUF4391: Domain of un 59.2 23 0.00049 31.6 5.5 45 103-148 177-221 (221)
190 PHA02675 ORF104 fusion protein 59.1 61 0.0013 26.5 7.3 27 135-161 61-87 (90)
191 PF07889 DUF1664: Protein of u 59.0 1.1E+02 0.0024 26.1 9.2 25 107-131 67-91 (126)
192 PF12737 Mating_C: C-terminal 58.8 10 0.00022 37.9 3.5 25 100-124 394-418 (419)
193 PF12329 TMF_DNA_bd: TATA elem 58.7 80 0.0017 24.2 7.7 45 106-150 10-58 (74)
194 PF03233 Cauli_AT: Aphid trans 58.7 31 0.00067 30.9 6.1 50 111-160 114-163 (163)
195 PF13815 Dzip-like_N: Iguana/D 58.6 52 0.0011 26.8 7.0 21 110-130 82-102 (118)
196 PRK08476 F0F1 ATP synthase sub 58.5 88 0.0019 26.2 8.6 45 88-132 39-83 (141)
197 PF07061 Swi5: Swi5; InterPro 58.2 91 0.002 24.6 8.3 56 105-160 4-67 (83)
198 KOG1962 B-cell receptor-associ 58.0 27 0.00059 32.3 5.9 17 140-156 194-210 (216)
199 PRK06569 F0F1 ATP synthase sub 58.0 89 0.0019 27.5 8.8 44 87-130 41-84 (155)
200 PF05266 DUF724: Protein of un 57.9 56 0.0012 29.2 7.7 52 102-156 125-176 (190)
201 PF09744 Jnk-SapK_ap_N: JNK_SA 57.8 58 0.0012 28.6 7.6 22 111-132 92-113 (158)
202 cd07596 BAR_SNX The Bin/Amphip 57.7 92 0.002 26.0 8.6 25 89-113 112-136 (218)
203 PF14662 CCDC155: Coiled-coil 57.7 46 0.001 30.5 7.2 16 134-149 62-77 (193)
204 COG2433 Uncharacterized conser 57.6 52 0.0011 35.0 8.4 23 109-131 423-445 (652)
205 PRK05892 nucleoside diphosphat 57.5 63 0.0014 27.9 7.7 49 108-156 11-71 (158)
206 TIGR01010 BexC_CtrB_KpsE polys 57.4 34 0.00073 32.2 6.5 25 96-120 165-189 (362)
207 PF15556 Zwint: ZW10 interacto 57.2 72 0.0016 30.1 8.4 63 92-157 118-180 (252)
208 PF02388 FemAB: FemAB family; 57.1 44 0.00096 32.4 7.4 48 107-154 241-295 (406)
209 PF08647 BRE1: BRE1 E3 ubiquit 56.9 97 0.0021 24.5 8.4 61 91-151 7-71 (96)
210 PF10146 zf-C4H2: Zinc finger- 56.7 49 0.0011 30.5 7.3 24 108-131 32-55 (230)
211 PF15035 Rootletin: Ciliary ro 56.6 57 0.0012 29.0 7.4 23 134-156 97-119 (182)
212 PF04642 DUF601: Protein of un 56.4 19 0.00041 34.7 4.7 48 108-156 217-269 (311)
213 PF04420 CHD5: CHD5-like prote 56.1 42 0.00092 28.9 6.4 21 135-155 76-96 (161)
214 PF04728 LPP: Lipoprotein leuc 56.1 59 0.0013 24.4 6.3 33 116-151 4-36 (56)
215 COG4467 Regulator of replicati 55.8 17 0.00036 30.9 3.7 40 108-150 15-54 (114)
216 KOG0681 Actin-related protein 55.2 25 0.00053 37.1 5.6 64 82-145 346-418 (645)
217 PF04156 IncA: IncA protein; 55.2 1.3E+02 0.0029 25.5 9.4 34 95-128 117-150 (191)
218 PRK03992 proteasome-activating 55.1 43 0.00093 32.2 6.9 41 110-153 10-50 (389)
219 TIGR01843 type_I_hlyD type I s 55.0 1.1E+02 0.0024 28.3 9.4 20 137-156 251-270 (423)
220 PRK10636 putative ABC transpor 54.7 81 0.0018 32.4 9.2 26 107-132 562-587 (638)
221 TIGR01069 mutS2 MutS2 family p 54.6 68 0.0015 34.2 8.9 36 96-131 531-566 (771)
222 PF06216 RTBV_P46: Rice tungro 54.5 60 0.0013 31.6 7.7 37 94-133 67-103 (389)
223 PF08172 CASP_C: CASP C termin 54.4 46 0.001 30.9 6.8 46 111-156 82-131 (248)
224 PF12128 DUF3584: Protein of u 54.3 69 0.0015 35.6 9.1 63 97-162 479-541 (1201)
225 PRK11147 ABC transporter ATPas 54.2 62 0.0013 33.0 8.2 52 105-156 565-626 (635)
226 PF08317 Spc7: Spc7 kinetochor 54.0 58 0.0012 30.8 7.5 7 25-31 15-21 (325)
227 PRK13453 F0F1 ATP synthase sub 53.9 1.4E+02 0.003 25.7 9.2 46 87-132 49-94 (173)
228 PRK14472 F0F1 ATP synthase sub 53.8 1.4E+02 0.0029 25.6 9.1 46 87-132 49-94 (175)
229 PF14282 FlxA: FlxA-like prote 53.8 37 0.0008 27.5 5.4 23 134-156 53-75 (106)
230 PF09755 DUF2046: Uncharacteri 53.7 73 0.0016 31.1 8.2 51 105-155 226-284 (310)
231 PF15290 Syntaphilin: Golgi-lo 53.2 45 0.00098 32.4 6.7 58 96-156 78-141 (305)
232 PF12709 Kinetocho_Slk19: Cent 53.1 78 0.0017 25.7 7.0 28 104-131 45-72 (87)
233 PF04949 Transcrip_act: Transc 53.0 1.1E+02 0.0025 27.3 8.6 57 94-153 96-155 (159)
234 PTZ00454 26S protease regulato 52.7 66 0.0014 31.5 7.9 40 111-153 25-64 (398)
235 PF07407 Seadorna_VP6: Seadorn 52.7 35 0.00076 34.1 5.9 21 104-124 42-62 (420)
236 KOG4643 Uncharacterized coiled 52.6 47 0.001 37.3 7.4 28 105-132 527-554 (1195)
237 PF10146 zf-C4H2: Zinc finger- 52.4 93 0.002 28.8 8.3 41 111-154 63-103 (230)
238 PF13805 Pil1: Eisosome compon 52.4 39 0.00085 32.2 6.1 21 87-107 127-148 (271)
239 PF14775 NYD-SP28_assoc: Sperm 52.2 30 0.00065 25.8 4.3 35 119-157 24-58 (60)
240 PF14915 CCDC144C: CCDC144C pr 52.1 1E+02 0.0022 30.1 8.9 57 97-156 182-245 (305)
241 PF06428 Sec2p: GDP/GTP exchan 51.9 46 0.001 27.2 5.7 24 134-157 46-69 (100)
242 PF02346 Vac_Fusion: Chordopox 51.9 1E+02 0.0022 23.2 7.1 51 110-160 3-57 (57)
243 TIGR03689 pup_AAA proteasome A 51.9 36 0.00079 34.8 6.1 41 110-153 3-43 (512)
244 COG3883 Uncharacterized protei 51.9 62 0.0013 30.9 7.3 20 137-156 78-97 (265)
245 PRK14471 F0F1 ATP synthase sub 51.4 1.5E+02 0.0032 25.0 9.2 46 87-132 39-84 (164)
246 PF05377 FlaC_arch: Flagella a 51.4 98 0.0021 23.2 6.8 22 109-130 1-22 (55)
247 KOG0995 Centromere-associated 51.4 1E+02 0.0022 32.6 9.2 24 109-132 302-325 (581)
248 PRK04863 mukB cell division pr 51.4 78 0.0017 36.5 9.1 20 88-107 322-341 (1486)
249 PF04799 Fzo_mitofusin: fzo-li 51.2 89 0.0019 28.1 7.8 41 109-156 121-161 (171)
250 KOG4001 Axonemal dynein light 50.9 90 0.0019 29.5 8.0 36 97-132 170-209 (259)
251 cd00890 Prefoldin Prefoldin is 50.9 61 0.0013 25.5 6.1 46 111-156 2-47 (129)
252 cd07596 BAR_SNX The Bin/Amphip 50.8 84 0.0018 26.2 7.3 27 99-125 108-134 (218)
253 PF11365 DUF3166: Protein of u 50.7 73 0.0016 26.2 6.6 41 112-155 5-45 (96)
254 TIGR01000 bacteriocin_acc bact 50.7 70 0.0015 31.2 7.7 16 138-153 242-257 (457)
255 KOG0250 DNA repair protein RAD 50.6 72 0.0016 35.8 8.5 21 97-117 368-388 (1074)
256 PF08549 SWI-SNF_Ssr4: Fungal 50.6 50 0.0011 35.2 7.0 53 97-149 360-412 (669)
257 KOG4797 Transcriptional regula 50.6 40 0.00087 28.8 5.2 43 84-130 54-96 (123)
258 TIGR03185 DNA_S_dndD DNA sulfu 50.6 53 0.0011 33.7 7.1 45 109-156 210-254 (650)
259 PF14197 Cep57_CLD_2: Centroso 50.5 92 0.002 23.8 6.8 21 112-132 2-22 (69)
260 PF07047 OPA3: Optic atrophy 3 50.4 28 0.0006 29.2 4.3 22 107-128 111-132 (134)
261 PF07716 bZIP_2: Basic region 50.1 80 0.0017 22.3 6.0 16 136-151 36-51 (54)
262 PRK05431 seryl-tRNA synthetase 50.1 76 0.0016 31.3 7.9 64 100-163 34-104 (425)
263 PF05622 HOOK: HOOK protein; 50.0 5.4 0.00012 41.3 0.0 55 101-156 319-380 (713)
264 PF14282 FlxA: FlxA-like prote 49.9 57 0.0012 26.4 5.9 20 134-153 60-79 (106)
265 PRK13460 F0F1 ATP synthase sub 49.9 1.6E+02 0.0036 25.1 9.2 46 87-132 47-92 (173)
266 PRK09173 F0F1 ATP synthase sub 49.7 1.5E+02 0.0034 24.7 9.3 46 87-132 33-78 (159)
267 PF09766 FimP: Fms-interacting 49.6 87 0.0019 30.3 8.0 33 100-132 100-132 (355)
268 PF07926 TPR_MLP1_2: TPR/MLP1/ 49.2 1.2E+02 0.0026 25.1 7.8 34 96-130 41-74 (132)
269 PF07139 DUF1387: Protein of u 49.1 70 0.0015 31.1 7.3 25 136-160 240-266 (302)
270 PF06305 DUF1049: Protein of u 49.1 30 0.00065 24.8 3.8 24 104-127 44-67 (68)
271 PRK06798 fliD flagellar cappin 48.8 79 0.0017 31.5 7.8 43 111-153 389-432 (440)
272 cd07622 BAR_SNX4 The Bin/Amphi 48.6 66 0.0014 28.8 6.6 26 98-123 112-137 (201)
273 TIGR01242 26Sp45 26S proteasom 48.5 46 0.00099 31.3 5.9 39 111-152 2-40 (364)
274 PF13093 FTA4: Kinetochore com 48.5 13 0.00028 33.8 2.1 66 89-154 147-213 (213)
275 PRK14160 heat shock protein Gr 48.3 70 0.0015 29.4 6.8 13 113-125 66-78 (211)
276 KOG2077 JNK/SAPK-associated pr 48.2 41 0.0009 35.9 6.0 16 135-150 360-375 (832)
277 PTZ00419 valyl-tRNA synthetase 48.1 58 0.0013 35.4 7.3 27 106-132 927-953 (995)
278 PF07334 IFP_35_N: Interferon- 48.1 38 0.00082 26.8 4.4 26 118-146 3-28 (76)
279 TIGR01010 BexC_CtrB_KpsE polys 48.1 1.6E+02 0.0035 27.7 9.4 51 106-156 168-231 (362)
280 PF15369 KIAA1328: Uncharacter 48.0 73 0.0016 31.4 7.3 24 107-130 32-55 (328)
281 PF13747 DUF4164: Domain of un 48.0 1.2E+02 0.0025 24.1 7.2 25 107-131 38-62 (89)
282 PF15294 Leu_zip: Leucine zipp 47.9 61 0.0013 31.1 6.6 41 113-153 130-174 (278)
283 COG3883 Uncharacterized protei 47.8 1E+02 0.0022 29.4 8.1 38 110-150 61-98 (265)
284 PRK10265 chaperone-modulator p 47.8 23 0.00049 28.3 3.2 25 110-134 73-97 (101)
285 KOG0946 ER-Golgi vesicle-tethe 47.7 51 0.0011 36.3 6.7 60 91-150 654-717 (970)
286 PF06295 DUF1043: Protein of u 47.7 1.3E+02 0.0028 25.1 7.8 33 101-133 18-50 (128)
287 PF06152 Phage_min_cap2: Phage 47.5 1.1E+02 0.0024 29.6 8.5 15 58-72 279-293 (361)
288 PF12925 APP_E2: E2 domain of 47.5 82 0.0018 28.8 7.1 52 100-151 39-100 (193)
289 PF08317 Spc7: Spc7 kinetochor 47.4 1.6E+02 0.0035 27.8 9.3 11 141-151 278-288 (325)
290 PHA02562 46 endonuclease subun 47.4 89 0.0019 30.6 7.8 55 92-149 321-375 (562)
291 PF05529 Bap31: B-cell recepto 47.2 1.1E+02 0.0023 26.5 7.5 30 119-151 158-187 (192)
292 PF04799 Fzo_mitofusin: fzo-li 47.0 99 0.0022 27.8 7.4 14 136-149 124-137 (171)
293 PF08700 Vps51: Vps51/Vps67; 46.9 1.1E+02 0.0024 22.7 6.7 20 136-155 62-81 (87)
294 PF10481 CENP-F_N: Cenp-F N-te 46.8 62 0.0013 31.5 6.5 22 111-132 56-77 (307)
295 KOG0982 Centrosomal protein Nu 46.7 78 0.0017 32.6 7.4 10 137-146 309-318 (502)
296 CHL00019 atpF ATP synthase CF0 46.6 1.9E+02 0.0042 24.9 9.1 46 87-132 55-100 (184)
297 PF11853 DUF3373: Protein of u 46.6 21 0.00046 36.6 3.5 27 106-132 29-55 (489)
298 TIGR03017 EpsF chain length de 46.5 98 0.0021 29.5 7.8 46 111-156 321-366 (444)
299 PF05335 DUF745: Protein of un 46.5 1.3E+02 0.0027 27.2 8.1 52 105-156 64-126 (188)
300 PHA00728 hypothetical protein 46.5 26 0.00056 30.6 3.6 19 115-133 5-23 (151)
301 PF02403 Seryl_tRNA_N: Seryl-t 46.5 1.4E+02 0.003 23.3 7.6 60 104-163 39-105 (108)
302 PRK03992 proteasome-activating 46.5 67 0.0015 30.9 6.8 44 110-156 3-46 (389)
303 KOG1318 Helix loop helix trans 46.4 36 0.00078 34.3 5.0 42 104-148 286-327 (411)
304 PRK09973 putative outer membra 46.3 1.2E+02 0.0025 24.6 7.0 24 109-132 25-48 (85)
305 TIGR00414 serS seryl-tRNA synt 46.3 92 0.002 30.7 7.8 61 103-163 39-107 (418)
306 COG1340 Uncharacterized archae 46.3 1.8E+02 0.004 28.2 9.6 70 89-158 28-102 (294)
307 TIGR03007 pepcterm_ChnLen poly 46.2 1.2E+02 0.0025 29.7 8.4 50 107-156 323-379 (498)
308 PF04849 HAP1_N: HAP1 N-termin 46.1 88 0.0019 30.4 7.5 23 42-64 139-164 (306)
309 PRK06664 fliD flagellar hook-a 46.1 89 0.0019 33.0 8.0 48 110-157 609-657 (661)
310 smart00787 Spc7 Spc7 kinetocho 46.1 1.8E+02 0.0039 27.9 9.5 58 97-154 221-286 (312)
311 KOG2129 Uncharacterized conser 46.0 79 0.0017 32.6 7.4 24 110-133 280-303 (552)
312 KOG0288 WD40 repeat protein Ti 46.0 1.2E+02 0.0026 31.1 8.5 19 106-124 53-71 (459)
313 PF05557 MAD: Mitotic checkpoi 45.9 73 0.0016 33.2 7.4 25 107-131 509-533 (722)
314 PF07047 OPA3: Optic atrophy 3 45.7 55 0.0012 27.5 5.4 33 100-132 97-129 (134)
315 KOG1853 LIS1-interacting prote 45.4 1E+02 0.0023 30.0 7.7 48 109-156 134-181 (333)
316 PRK13729 conjugal transfer pil 45.3 2.4E+02 0.0053 29.1 10.7 43 108-150 83-129 (475)
317 PF10883 DUF2681: Protein of u 45.1 1.1E+02 0.0024 24.7 6.8 20 112-131 27-46 (87)
318 KOG0995 Centromere-associated 44.8 1.1E+02 0.0024 32.3 8.3 68 89-156 253-325 (581)
319 cd07627 BAR_Vps5p The Bin/Amph 44.7 1.8E+02 0.0039 25.8 8.7 27 101-127 108-134 (216)
320 PF14362 DUF4407: Domain of un 44.6 1.6E+02 0.0034 27.1 8.6 25 107-131 134-158 (301)
321 PF12329 TMF_DNA_bd: TATA elem 44.5 1.1E+02 0.0023 23.5 6.4 16 114-129 11-26 (74)
322 PF05700 BCAS2: Breast carcino 44.3 1.3E+02 0.0027 27.1 7.8 11 137-147 201-211 (221)
323 PF09755 DUF2046: Uncharacteri 44.3 87 0.0019 30.6 7.1 19 135-153 51-69 (310)
324 PF07544 Med9: RNA polymerase 44.2 42 0.00091 26.1 4.2 21 135-155 62-82 (83)
325 PRK13461 F0F1 ATP synthase sub 44.0 1.9E+02 0.0042 24.2 9.1 46 87-132 36-81 (159)
326 PF10226 DUF2216: Uncharacteri 43.9 2.1E+02 0.0047 26.4 9.1 36 97-132 20-55 (195)
327 PF04012 PspA_IM30: PspA/IM30 43.8 2.1E+02 0.0046 25.0 9.0 15 113-127 103-117 (221)
328 PF02344 Myc-LZ: Myc leucine z 43.8 47 0.001 22.6 3.7 21 112-132 5-25 (32)
329 PF03962 Mnd1: Mnd1 family; I 43.7 1.2E+02 0.0027 26.8 7.5 49 102-150 104-153 (188)
330 KOG0999 Microtubule-associated 43.6 77 0.0017 33.8 7.0 41 113-153 147-191 (772)
331 TIGR01461 greB transcription e 43.5 84 0.0018 27.1 6.3 48 110-157 10-70 (156)
332 KOG0250 DNA repair protein RAD 43.4 1.5E+02 0.0033 33.4 9.5 27 97-124 362-388 (1074)
333 PF05384 DegS: Sensor protein 43.3 1.5E+02 0.0033 26.1 7.9 34 96-129 22-55 (159)
334 PRK05729 valS valyl-tRNA synth 43.2 63 0.0014 34.6 6.6 26 107-132 810-835 (874)
335 PF10481 CENP-F_N: Cenp-F N-te 43.2 2E+02 0.0043 28.2 9.2 60 91-153 71-130 (307)
336 PF02609 Exonuc_VII_S: Exonucl 43.1 1.1E+02 0.0024 21.7 5.9 49 108-156 3-51 (53)
337 PRK10698 phage shock protein P 43.1 1.9E+02 0.0042 26.2 8.8 23 109-131 100-122 (222)
338 TIGR02680 conserved hypothetic 43.1 83 0.0018 35.6 7.7 50 97-151 733-782 (1353)
339 COG4717 Uncharacterized conser 43.0 1.3E+02 0.0029 33.4 8.9 22 96-117 729-752 (984)
340 PF13870 DUF4201: Domain of un 43.0 2.1E+02 0.0046 24.4 8.9 23 134-156 147-169 (177)
341 KOG2077 JNK/SAPK-associated pr 42.6 1.6E+02 0.0034 31.8 9.0 63 94-156 343-423 (832)
342 PTZ00454 26S protease regulato 42.5 1.1E+02 0.0024 30.0 7.6 36 108-146 29-64 (398)
343 PF04871 Uso1_p115_C: Uso1 / p 42.4 2.1E+02 0.0045 24.3 8.4 27 103-129 50-76 (136)
344 PF14303 NAM-associated: No ap 42.4 1.4E+02 0.003 24.4 7.1 12 89-100 59-70 (154)
345 PF08898 DUF1843: Domain of un 42.4 76 0.0016 23.8 5.0 26 127-152 26-51 (53)
346 PF09006 Surfac_D-trimer: Lung 42.3 77 0.0017 23.1 4.9 16 112-127 3-18 (46)
347 PF00804 Syntaxin: Syntaxin; 42.1 1.1E+02 0.0024 22.5 6.1 12 142-153 86-97 (103)
348 COG3159 Uncharacterized protei 42.0 86 0.0019 29.3 6.4 9 123-131 70-78 (218)
349 PRK09413 IS2 repressor TnpA; R 42.0 45 0.00097 27.0 4.2 23 108-130 78-100 (121)
350 PRK11239 hypothetical protein; 41.9 44 0.00096 31.1 4.6 14 24-37 131-144 (215)
351 PF09730 BicD: Microtubule-ass 41.9 1.7E+02 0.0038 31.5 9.5 58 95-152 27-89 (717)
352 TIGR02209 ftsL_broad cell divi 41.7 1.3E+02 0.0028 22.4 6.4 17 135-151 41-57 (85)
353 PF14775 NYD-SP28_assoc: Sperm 41.7 1.5E+02 0.0032 22.1 7.2 20 112-131 37-56 (60)
354 PF07407 Seadorna_VP6: Seadorn 41.7 52 0.0011 32.9 5.2 30 109-141 33-62 (420)
355 PF07200 Mod_r: Modifier of ru 41.6 1E+02 0.0022 25.5 6.3 7 94-100 42-48 (150)
356 PF09403 FadA: Adhesion protei 41.6 1.7E+02 0.0038 24.9 7.8 47 110-156 29-76 (126)
357 KOG1103 Predicted coiled-coil 41.6 1.2E+02 0.0025 31.0 7.7 56 95-153 225-287 (561)
358 cd07666 BAR_SNX7 The Bin/Amphi 41.5 1.5E+02 0.0034 27.6 8.1 47 98-144 153-207 (243)
359 COG1842 PspA Phage shock prote 41.4 1.2E+02 0.0026 27.9 7.3 16 136-151 124-139 (225)
360 TIGR01843 type_I_hlyD type I s 41.4 2.3E+02 0.0051 26.2 9.3 18 140-157 204-221 (423)
361 PF13805 Pil1: Eisosome compon 41.4 76 0.0017 30.3 6.2 48 85-132 142-189 (271)
362 PF12777 MT: Microtubule-bindi 41.4 2.8E+02 0.006 26.4 10.0 43 88-130 222-264 (344)
363 PF10267 Tmemb_cc2: Predicted 41.4 1.2E+02 0.0026 30.4 7.8 18 139-156 276-293 (395)
364 PRK14872 rod shape-determining 41.2 1.5E+02 0.0033 29.1 8.3 45 96-143 30-82 (337)
365 COG4942 Membrane-bound metallo 41.0 1.1E+02 0.0023 31.1 7.4 63 97-159 55-121 (420)
366 PRK08475 F0F1 ATP synthase sub 41.0 2.3E+02 0.0051 24.3 9.1 46 87-132 53-98 (167)
367 PF15290 Syntaphilin: Golgi-lo 41.0 2.2E+02 0.0047 27.9 9.1 14 39-52 44-57 (305)
368 PRK11239 hypothetical protein; 40.9 39 0.00084 31.4 4.1 10 112-121 187-196 (215)
369 PF04012 PspA_IM30: PspA/IM30 40.9 2.5E+02 0.0054 24.6 9.8 24 108-131 105-128 (221)
370 PRK10361 DNA recombination pro 40.9 1.7E+02 0.0036 30.1 8.8 21 111-131 63-83 (475)
371 cd07667 BAR_SNX30 The Bin/Amph 40.9 2E+02 0.0043 27.0 8.7 34 99-132 151-184 (240)
372 PHA03011 hypothetical protein; 40.9 1.3E+02 0.0027 25.7 6.7 14 136-149 103-116 (120)
373 PF04420 CHD5: CHD5-like prote 40.8 60 0.0013 27.9 5.0 25 134-158 68-92 (161)
374 PF05308 Mito_fiss_reg: Mitoch 40.8 33 0.00071 32.1 3.6 23 108-130 122-144 (253)
375 PRK14473 F0F1 ATP synthase sub 40.8 2.2E+02 0.0048 23.9 9.2 46 87-132 39-84 (164)
376 TIGR02169 SMC_prok_A chromosom 40.7 1.7E+02 0.0037 30.9 9.1 10 144-153 474-483 (1164)
377 PF05531 NPV_P10: Nucleopolyhe 40.6 1.3E+02 0.0029 23.7 6.4 52 108-159 11-69 (75)
378 KOG0818 GTPase-activating prot 40.6 48 0.001 34.9 5.0 44 106-152 421-464 (669)
379 KOG2467 Glycine/serine hydroxy 40.6 54 0.0012 33.4 5.3 66 100-165 406-473 (477)
380 PF06818 Fez1: Fez1; InterPro 40.6 97 0.0021 28.5 6.5 45 104-151 62-106 (202)
381 PRK00409 recombination and DNA 40.5 1.7E+02 0.0036 31.4 9.1 44 88-131 517-560 (782)
382 PF10779 XhlA: Haemolysin XhlA 40.4 1.6E+02 0.0034 22.1 7.3 44 107-153 5-48 (71)
383 PF08961 DUF1875: Domain of un 40.4 9.3 0.0002 35.9 0.0 21 107-127 121-141 (243)
384 PF10046 BLOC1_2: Biogenesis o 40.3 1.9E+02 0.0041 23.0 9.4 55 95-150 30-84 (99)
385 COG3096 MukB Uncharacterized p 40.3 1.6E+02 0.0035 32.9 9.0 45 112-156 363-407 (1480)
386 PF06210 DUF1003: Protein of u 40.2 1.2E+02 0.0026 25.0 6.4 10 92-101 55-64 (108)
387 PF10359 Fmp27_WPPW: RNA pol I 40.2 54 0.0012 32.7 5.3 8 54-61 148-155 (475)
388 PRK03947 prefoldin subunit alp 40.1 1.3E+02 0.0027 24.8 6.6 27 106-132 4-30 (140)
389 KOG1962 B-cell receptor-associ 40.1 1.2E+02 0.0025 28.3 7.0 15 134-148 195-209 (216)
390 PF08286 Spc24: Spc24 subunit 39.9 10 0.00022 30.9 0.1 26 107-132 12-37 (118)
391 PF03961 DUF342: Protein of un 39.9 2.2E+02 0.0048 28.0 9.3 25 134-158 384-408 (451)
392 PF04859 DUF641: Plant protein 39.8 1.2E+02 0.0025 26.2 6.5 43 108-153 80-122 (131)
393 PF09789 DUF2353: Uncharacteri 39.8 69 0.0015 31.2 5.7 33 100-132 75-110 (319)
394 PF04156 IncA: IncA protein; 39.8 1.9E+02 0.0042 24.5 7.9 20 112-131 127-146 (191)
395 KOG3561 Aryl-hydrocarbon recep 39.7 45 0.00098 36.2 4.9 52 96-147 21-72 (803)
396 PF01763 Herpes_UL6: Herpesvir 39.7 69 0.0015 33.5 6.0 37 108-147 370-406 (557)
397 PF06637 PV-1: PV-1 protein (P 39.7 3.3E+02 0.0071 27.9 10.4 39 118-159 352-390 (442)
398 PF11577 NEMO: NF-kappa-B esse 39.6 1.6E+02 0.0034 22.7 6.6 21 112-132 3-23 (68)
399 PF04849 HAP1_N: HAP1 N-termin 39.6 1.4E+02 0.003 29.2 7.6 24 134-157 229-252 (306)
400 PF10669 Phage_Gp23: Protein g 39.4 1.8E+02 0.004 24.6 7.4 61 90-154 58-118 (121)
401 PF07227 DUF1423: Protein of u 39.4 83 0.0018 32.2 6.4 31 101-131 343-373 (446)
402 KOG2391 Vacuolar sorting prote 39.3 2.3E+02 0.0049 28.5 9.1 61 94-154 214-282 (365)
403 smart00338 BRLZ basic region l 39.3 1.5E+02 0.0032 21.5 6.3 18 136-153 37-54 (65)
404 COG3206 GumC Uncharacterized p 39.2 1.5E+02 0.0033 28.9 8.0 51 107-157 348-398 (458)
405 PF06657 Cep57_MT_bd: Centroso 39.2 1.6E+02 0.0034 22.9 6.7 25 108-132 17-41 (79)
406 smart00340 HALZ homeobox assoc 39.2 68 0.0015 23.2 4.2 19 135-153 15-33 (44)
407 PF07352 Phage_Mu_Gam: Bacteri 39.0 1.5E+02 0.0032 25.0 7.0 47 108-156 10-56 (149)
408 PF04340 DUF484: Protein of un 39.0 1.5E+02 0.0032 26.3 7.3 27 109-135 48-74 (225)
409 PLN02943 aminoacyl-tRNA ligase 39.0 89 0.0019 34.1 7.0 26 107-132 888-913 (958)
410 PF04568 IATP: Mitochondrial A 38.9 2.1E+02 0.0045 23.6 7.6 34 89-122 50-83 (100)
411 PF06810 Phage_GP20: Phage min 38.9 1E+02 0.0023 26.6 6.2 16 107-122 33-48 (155)
412 PF10168 Nup88: Nuclear pore c 38.9 1.9E+02 0.0041 31.0 9.2 57 97-156 543-603 (717)
413 KOG3910 Helix loop helix trans 38.8 83 0.0018 33.1 6.3 17 79-95 514-531 (632)
414 PF11544 Spc42p: Spindle pole 38.7 1.6E+02 0.0035 23.5 6.6 9 123-131 6-14 (76)
415 PLN03217 transcription factor 38.6 71 0.0015 26.3 4.7 13 108-120 20-32 (93)
416 COG5293 Predicted ATPase [Gene 38.5 1.6E+02 0.0034 31.0 8.2 67 90-156 330-403 (591)
417 PF01920 Prefoldin_2: Prefoldi 38.3 1.1E+02 0.0025 23.1 5.8 21 136-156 73-93 (106)
418 KOG4593 Mitotic checkpoint pro 38.2 96 0.0021 33.5 6.9 56 100-155 551-616 (716)
419 KOG3156 Uncharacterized membra 38.2 1.4E+02 0.003 28.0 7.1 27 133-159 117-143 (220)
420 cd00890 Prefoldin Prefoldin is 38.1 1.3E+02 0.0028 23.6 6.2 37 109-145 7-43 (129)
421 PF13974 YebO: YebO-like prote 38.0 73 0.0016 25.5 4.6 32 95-132 19-50 (80)
422 PF14916 CCDC92: Coiled-coil d 38.0 83 0.0018 23.9 4.7 45 108-158 3-47 (60)
423 PF14662 CCDC155: Coiled-coil 38.0 1.3E+02 0.0029 27.6 6.9 45 109-153 9-57 (193)
424 PRK00409 recombination and DNA 37.9 1.8E+02 0.0039 31.2 8.9 38 94-131 534-571 (782)
425 KOG3540 Beta amyloid precursor 37.9 1E+02 0.0022 32.3 6.8 43 108-150 271-314 (615)
426 PRK07737 fliD flagellar cappin 37.8 1.5E+02 0.0032 30.1 7.9 48 109-156 449-497 (501)
427 PF12999 PRKCSH-like: Glucosid 37.8 2.9E+02 0.0062 24.9 8.9 13 137-149 158-170 (176)
428 TIGR01005 eps_transp_fam exopo 37.8 1.7E+02 0.0037 30.3 8.5 24 133-156 377-400 (754)
429 PF06698 DUF1192: Protein of u 37.5 66 0.0014 24.3 4.1 21 110-130 23-43 (59)
430 PF05957 DUF883: Bacterial pro 37.5 1.6E+02 0.0034 22.8 6.5 21 112-132 2-22 (94)
431 PF02994 Transposase_22: L1 tr 37.5 1.5E+02 0.0031 29.0 7.6 46 109-157 145-190 (370)
432 PF05667 DUF812: Protein of un 37.4 1.7E+02 0.0036 30.7 8.4 11 48-58 290-300 (594)
433 cd00632 Prefoldin_beta Prefold 37.3 1.6E+02 0.0034 23.3 6.6 37 111-150 66-102 (105)
434 PF15035 Rootletin: Ciliary ro 37.3 1.7E+02 0.0038 26.0 7.5 34 113-149 86-119 (182)
435 PF04375 HemX: HemX; InterPro 37.3 1.6E+02 0.0035 28.5 7.8 48 108-155 60-116 (372)
436 PF09486 HrpB7: Bacterial type 37.1 3E+02 0.0064 24.3 8.9 56 100-158 7-62 (158)
437 KOG4593 Mitotic checkpoint pro 37.0 1.9E+02 0.004 31.4 8.7 44 90-133 206-252 (716)
438 KOG3433 Protein involved in me 37.0 2.5E+02 0.0054 26.1 8.5 65 93-157 101-169 (203)
439 PRK04778 septation ring format 36.9 2E+02 0.0044 29.3 8.7 67 96-162 92-163 (569)
440 PF05557 MAD: Mitotic checkpoi 36.7 12 0.00025 38.9 0.0 46 105-150 254-299 (722)
441 PF12709 Kinetocho_Slk19: Cent 36.5 2.3E+02 0.005 23.0 7.3 15 136-150 60-74 (87)
442 COG3879 Uncharacterized protei 36.4 2.5E+02 0.0053 26.7 8.6 26 108-133 57-82 (247)
443 PF06160 EzrA: Septation ring 36.4 2E+02 0.0043 29.4 8.6 66 97-162 89-159 (560)
444 PF11068 YlqD: YlqD protein; 36.4 2.7E+02 0.0058 23.8 8.1 23 109-131 28-50 (131)
445 PF10482 CtIP_N: Tumour-suppre 36.4 88 0.0019 26.9 5.2 29 103-131 91-119 (120)
446 PF09486 HrpB7: Bacterial type 36.3 1.7E+02 0.0037 25.8 7.2 22 110-131 81-102 (158)
447 PLN02678 seryl-tRNA synthetase 36.3 1.6E+02 0.0035 29.7 7.8 27 137-163 83-109 (448)
448 PF04201 TPD52: Tumour protein 36.2 1.3E+02 0.0028 27.0 6.4 14 109-122 37-50 (162)
449 PF04102 SlyX: SlyX; InterPro 36.1 1.6E+02 0.0034 22.1 6.0 19 135-153 35-53 (69)
450 TIGR03321 alt_F1F0_F0_B altern 36.1 3.2E+02 0.007 24.7 9.1 43 88-130 37-79 (246)
451 PF05600 DUF773: Protein of un 36.0 1.6E+02 0.0035 30.1 7.9 26 135-160 470-495 (507)
452 KOG2070 Guanine nucleotide exc 36.0 81 0.0018 33.2 5.8 30 112-141 620-649 (661)
453 COG3167 PilO Tfp pilus assembl 35.9 1.7E+02 0.0038 27.2 7.3 27 105-131 70-96 (211)
454 KOG0239 Kinesin (KAR3 subfamil 35.9 2.2E+02 0.0048 30.3 9.1 18 139-156 300-317 (670)
455 PF15397 DUF4618: Domain of un 35.8 1.6E+02 0.0036 27.9 7.4 27 106-132 4-30 (258)
456 PF08537 NBP1: Fungal Nap bind 35.7 1.2E+02 0.0027 29.7 6.7 18 115-132 175-192 (323)
457 PRK10476 multidrug resistance 35.6 1.4E+02 0.0031 27.7 7.0 19 137-155 188-206 (346)
458 PF01486 K-box: K-box region; 35.5 1.2E+02 0.0025 23.8 5.5 13 136-148 86-98 (100)
459 PF03285 Paralemmin: Paralemmi 35.4 38 0.00083 32.4 3.2 47 180-232 83-130 (278)
460 PRK14475 F0F1 ATP synthase sub 35.3 2.8E+02 0.0061 23.6 9.2 46 87-132 41-86 (167)
461 PF07889 DUF1664: Protein of u 35.3 1.7E+02 0.0038 24.9 6.8 38 118-155 64-105 (126)
462 PRK10132 hypothetical protein; 35.3 96 0.0021 25.6 5.2 25 108-132 5-29 (108)
463 PF06698 DUF1192: Protein of u 35.3 1.4E+02 0.0031 22.5 5.6 19 135-153 31-49 (59)
464 PF15188 CCDC-167: Coiled-coil 35.3 78 0.0017 25.5 4.5 42 84-125 24-67 (85)
465 PRK07353 F0F1 ATP synthase sub 35.2 2.4E+02 0.0053 22.8 9.2 45 88-132 37-81 (140)
466 PF14988 DUF4515: Domain of un 35.2 1.8E+02 0.004 26.2 7.4 44 108-151 47-97 (206)
467 PF09744 Jnk-SapK_ap_N: JNK_SA 35.2 2.5E+02 0.0055 24.6 8.0 32 118-152 85-116 (158)
468 PF04111 APG6: Autophagy prote 34.9 3.2E+02 0.0069 26.1 9.3 17 109-125 79-95 (314)
469 PF15397 DUF4618: Domain of un 34.8 2E+02 0.0044 27.3 7.8 41 92-132 65-105 (258)
470 COG1561 Uncharacterized stress 34.8 1.5E+02 0.0032 28.8 7.0 20 137-156 217-236 (290)
471 PF14257 DUF4349: Domain of un 34.8 1.8E+02 0.0038 26.3 7.2 27 132-158 162-188 (262)
472 PF04999 FtsL: Cell division p 34.6 74 0.0016 24.6 4.2 16 136-151 53-68 (97)
473 PHA03252 DNA packaging tegumen 34.3 2.2E+02 0.0049 30.1 8.7 36 96-132 36-71 (589)
474 PF07200 Mod_r: Modifier of ru 34.1 2.6E+02 0.0056 23.1 7.6 34 92-125 32-65 (150)
475 PF03961 DUF342: Protein of un 34.1 2.9E+02 0.0063 27.1 9.1 21 136-156 379-399 (451)
476 COG1196 Smc Chromosome segrega 34.0 2E+02 0.0043 31.9 8.7 10 29-38 608-617 (1163)
477 TIGR01000 bacteriocin_acc bact 34.0 3.1E+02 0.0068 26.8 9.3 19 138-156 297-315 (457)
478 PRK09841 cryptic autophosphory 34.0 2.9E+02 0.0064 28.9 9.6 61 95-155 254-327 (726)
479 PF03194 LUC7: LUC7 N_terminus 33.7 1.7E+02 0.0037 27.2 7.1 57 97-153 112-170 (254)
480 PRK10636 putative ABC transpor 33.5 2.6E+02 0.0057 28.8 9.0 18 107-124 569-586 (638)
481 PRK11519 tyrosine kinase; Prov 33.4 2.6E+02 0.0057 29.3 9.1 61 95-155 254-320 (719)
482 COG0711 AtpF F0F1-type ATP syn 33.4 2.9E+02 0.0063 23.7 8.0 62 86-147 36-97 (161)
483 COG3166 PilN Tfp pilus assembl 33.2 1.8E+02 0.0038 26.6 7.0 56 104-159 61-116 (206)
484 PF03938 OmpH: Outer membrane 33.2 2.4E+02 0.0052 23.1 7.2 64 96-159 38-103 (158)
485 cd00677 S15_NS1_EPRS_RNA-bind 33.2 1.5E+02 0.0032 20.3 5.1 39 114-152 1-46 (46)
486 PRK05431 seryl-tRNA synthetase 33.0 2E+02 0.0042 28.5 7.8 66 87-155 35-103 (425)
487 TIGR00606 rad50 rad50. This fa 32.9 3.3E+02 0.0071 30.7 10.2 70 97-167 227-299 (1311)
488 PF05837 CENP-H: Centromere pr 32.9 2.3E+02 0.005 22.9 6.9 53 107-159 16-71 (106)
489 TIGR00634 recN DNA repair prot 32.8 3E+02 0.0064 27.9 9.1 81 86-166 314-395 (563)
490 PRK01885 greB transcription el 32.8 2E+02 0.0044 24.8 7.0 47 110-156 12-71 (157)
491 COG4420 Predicted membrane pro 32.6 1.4E+02 0.003 27.5 6.1 62 92-156 109-172 (191)
492 TIGR03346 chaperone_ClpB ATP-d 32.6 1.8E+02 0.004 31.1 8.0 63 96-158 390-460 (852)
493 PF04899 MbeD_MobD: MbeD/MobD 32.3 2.4E+02 0.0052 21.8 7.3 47 110-156 12-59 (70)
494 KOG3650 Predicted coiled-coil 32.1 1.8E+02 0.0039 24.7 6.2 46 108-156 56-101 (120)
495 PF13600 DUF4140: N-terminal d 32.0 1.4E+02 0.0031 23.1 5.5 34 108-144 70-103 (104)
496 PRK14143 heat shock protein Gr 32.0 2.3E+02 0.0051 26.4 7.7 48 107-154 66-114 (238)
497 COG1842 PspA Phage shock prote 31.9 3.1E+02 0.0066 25.3 8.3 57 103-162 101-159 (225)
498 PF11500 Cut12: Spindle pole b 31.4 1.6E+02 0.0034 26.1 6.1 51 86-136 83-133 (152)
499 PF11382 DUF3186: Protein of u 31.4 1.2E+02 0.0025 28.8 5.7 36 107-142 38-73 (308)
500 PF07888 CALCOCO1: Calcium bin 31.4 2.2E+02 0.0047 29.9 8.0 50 104-156 146-195 (546)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.49 E-value=1e-13 Score=101.23 Aligned_cols=62 Identities=40% Similarity=0.548 Sum_probs=57.1
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 85 d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
++|+.||+++||+||++||+||++++.+||.+|..|..+|..|..++ ..|+.|+..|+.++.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~---~~l~~e~~~lk~~~~ 64 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEI---ERLRRELEKLKSELE 64 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999999999999999987 568899999988764
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.37 E-value=1.8e-12 Score=94.61 Aligned_cols=61 Identities=38% Similarity=0.494 Sum_probs=53.5
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (268)
Q Consensus 85 d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL 148 (268)
+.|+.+|+++||+|||+||+||++++++||.+|..|..+|..|..++ ..|+.++..|+.++
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~---~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKEL---EQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999999999998886 56777888877764
No 3
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.16 E-value=1.1e-10 Score=83.34 Aligned_cols=46 Identities=43% Similarity=0.629 Sum_probs=41.5
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 85 d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
++++.||. +||+||+|||+||++++.+|+.+|..|..+|.+|..++
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i 48 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEI 48 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777 99999999999999999999999999999999987665
No 4
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.81 E-value=1.2e-08 Score=94.69 Aligned_cols=66 Identities=32% Similarity=0.500 Sum_probs=58.3
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 024384 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGS 161 (268)
Q Consensus 86 ~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~igs 161 (268)
.|-.|++++|||||+|||.||..||.+||++|..|+.+|..| .+++..||.++.+++.+|...|+.
T Consensus 205 ~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L----------~~~l~~l~~~v~e~k~~V~~hi~n 270 (279)
T KOG0837|consen 205 IKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDL----------ASELSKLKEQVAELKQKVMEHIHN 270 (279)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH----------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445678899999999999999999999999999999999554 788889999999999999888753
No 5
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.68 E-value=6.5e-08 Score=89.57 Aligned_cols=48 Identities=35% Similarity=0.430 Sum_probs=43.5
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 84 TEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 84 ~d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
-|+|-.||+|.||-||..+|-|||++++++|.+|+.|..+|+.|..+-
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en 113 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNEN 113 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888999999999999999999999999999999999998887653
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=98.64 E-value=4.9e-08 Score=97.98 Aligned_cols=63 Identities=32% Similarity=0.343 Sum_probs=52.1
Q ss_pred ccchHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 81 AESTEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 81 ~e~~d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
++.+=.||+.||++|||||-.||+|||+++.-||..+..|.+||++| .+||+.||.+|..+..
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~L----------k~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQL----------KKENATLKRQLDELVS 337 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhHHHHHHHHHHhh
Confidence 44456788889999999999999999999999999999988888776 5667777777776543
No 7
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=98.63 E-value=2e-07 Score=87.60 Aligned_cols=66 Identities=32% Similarity=0.488 Sum_probs=57.5
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 85 d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
+++.+|+...|--||.|||+||++..+.|+.|...|...|++|+.++ ..||.|+..||..+.+...
T Consensus 225 ~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa---~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 225 EKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQA---SELEREIRYLKQLILEVYK 290 (294)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 44556667777778999999999999999999999999999999997 5689999999998877643
No 8
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.61 E-value=4.3e-08 Score=92.63 Aligned_cols=51 Identities=37% Similarity=0.520 Sum_probs=45.3
Q ss_pred cchHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 82 ESTEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 82 e~~d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
|+...||.-|++.||||||-+|+|||+++.-||..|+-|+.+|..|+++|.
T Consensus 286 ee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELK 336 (348)
T KOG3584|consen 286 EEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELK 336 (348)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHH
Confidence 334578889999999999999999999999999999999999988877663
No 9
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.44 E-value=1.5e-07 Score=92.84 Aligned_cols=73 Identities=29% Similarity=0.330 Sum_probs=62.6
Q ss_pred ccchHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 81 AESTEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 81 ~e~~d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+|...+||.||+++|-+||.-||+|||.+++-||..|..-.++|+.|.+++ ..||.+|.-|-+||..+...+.
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV---~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKV---EELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHH---HHHhhccHHHHHHHHHHHHHHh
Confidence 444578999999999999999999999999999999999999999999998 4577777777777777655444
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.93 E-value=5.3e-08 Score=76.15 Aligned_cols=49 Identities=33% Similarity=0.454 Sum_probs=42.5
Q ss_pred chHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 83 STEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 83 ~~d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
-.+.|..||.+.||.||+++|.||..++.+||.++..|+.+..+|..++
T Consensus 26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~ 74 (92)
T PF03131_consen 26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQEL 74 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999888776665544
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.52 E-value=0.00029 Score=64.90 Aligned_cols=58 Identities=34% Similarity=0.506 Sum_probs=45.8
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 89 ~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
+-|+-+|=+||||||.+.|...++...+|..|.+||+.|+.++ ..|+.|+..||..+.
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v---~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQV---EQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999998887665 445556655555433
No 12
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.06 E-value=0.0016 Score=66.79 Aligned_cols=66 Identities=26% Similarity=0.389 Sum_probs=58.4
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl 155 (268)
|-.||+-.||-||.+.|.||..-|.+||.+|..|+.+..+|++. ...+++++-+++.+|.+|-..|
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E---r~~~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE---RDELDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999877 4678899999999999875443
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.85 E-value=0.0084 Score=51.48 Aligned_cols=64 Identities=27% Similarity=0.354 Sum_probs=50.8
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 84 TEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 84 ~d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
...|.+||.|.||-=|.-+|-|+-.+-.+||.+...|..+..+| ..||++++.++..++.+.+.
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L----------~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKL----------KEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999988888777555 45556666666665555553
No 14
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.36 E-value=0.017 Score=44.02 Aligned_cols=53 Identities=23% Similarity=0.205 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~igsfp 163 (268)
++++.|.....+|+.+|..|..++ +.+.+|.+.|+.+....|.||+.-|..+|
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~---~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQE---KTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567888888899999999999886 77899999999999999999999887776
No 15
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=95.10 E-value=0.1 Score=47.25 Aligned_cols=49 Identities=35% Similarity=0.213 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
.-...-..+.+|.+|.++|++||.+|..++.....+++||.+||.+|..
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445567788999999999999999999998888999999999997653
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.65 E-value=0.16 Score=39.14 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGS 161 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~igs 161 (268)
++-|..+|..|+.+|..|.. .+..|+.||.+||..-.....||++-+|-
T Consensus 20 i~~Lq~e~eeLke~n~~L~~---e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKE---ENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555552 36789999999999988888888877654
No 17
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.39 E-value=0.2 Score=41.11 Aligned_cols=47 Identities=32% Similarity=0.348 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.++.+||.++.+|-++-.+|...+ ..|..||.+||-+...||.+|..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~---~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQL---QELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888887776 34556666666666666666553
No 18
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=94.23 E-value=0.13 Score=47.74 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAA-LEAEVARLKCLLVD 150 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~-LEaEn~~LRaqL~e 150 (268)
..+.+|++|-++||+++.+|..+++.... +++||++||.+|.-
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35566777788888887777666665444 99999999996553
No 19
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=92.91 E-value=0.52 Score=39.12 Aligned_cols=46 Identities=26% Similarity=0.198 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
..+.+||.++.+|-++-.+|...+. .|..||.+||-+...||.+|.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~---el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLA---ELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888777777764 344455555544444444444
No 20
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.53 E-value=0.9 Score=34.19 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.++|.+||.+++.+.....+|-+.+. ....++.+|+.++..|..||..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~---~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVT---EQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999998888887773 3456778888888888888774
No 21
>PRK00295 hypothetical protein; Provisional
Probab=92.17 E-value=1 Score=34.11 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.+++.+||.+++.+.....+|-+.|. ....++.+|+.++..|..|+..
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~---~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLV---EQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999988888877763 3356677778888888777764
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.92 E-value=0.83 Score=41.19 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL 131 (268)
+..+++++.++.+|+.+|++|.++|
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555554
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.73 E-value=1.4 Score=39.83 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=41.8
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 90 KRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG--------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 90 KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~--------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+.+++-.++|--=.+=++++++|+++++.++.+.++....++. ...|++||+.|+.++..++.+++
T Consensus 82 ~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 82 LKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666555556677777777777776665555544432 22377777777777777665554
No 24
>PRK04325 hypothetical protein; Provisional
Probab=91.60 E-value=1.2 Score=34.16 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.+++.+||.+|+.+.....+|-+.|.. ...++.+|+.++..|..||..
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~---Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVAR---QQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999988888887743 355667777888888777764
No 25
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.35 E-value=1.1 Score=33.82 Aligned_cols=43 Identities=28% Similarity=0.533 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~r 154 (268)
.|.+++.+.+..|..+..+|++ +..|++++..|+.++.++|.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3567788899999999999984 778999999999999988754
No 26
>PRK04406 hypothetical protein; Provisional
Probab=91.33 E-value=1.4 Score=34.20 Aligned_cols=49 Identities=12% Similarity=0.191 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
.+++.+||.+++.+.....+|-+.|. ....++.+|+.++..|..||...
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~---~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALS---QQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999888888877763 34567788888888888888643
No 27
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=91.31 E-value=0.031 Score=54.11 Aligned_cols=61 Identities=33% Similarity=0.403 Sum_probs=49.5
Q ss_pred chHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 83 STEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (268)
Q Consensus 83 ~~d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LR 145 (268)
..++|++|=..+||.||-|+|+|||.....|+.+...+..+|.+|. +..+..|..++..+.
T Consensus 281 ~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~--~~~~~~l~~~~~~~~ 341 (395)
T KOG1414|consen 281 DPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL--LNEVELLRNEVKQLS 341 (395)
T ss_pred CchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc--cchhhHHHhHHhhhc
Confidence 3456667778899999999999999999999999999999999998 555555555555553
No 28
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.28 E-value=1.4 Score=33.68 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
.++|.+||.+|+.+.....+|-+.|.. ...++.+|+.++..|..||...
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~---Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTA---HEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999888888877743 3566777778888887777643
No 29
>PRK02119 hypothetical protein; Provisional
Probab=90.85 E-value=1.6 Score=33.47 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
-.+++.+||.+|+.+.....+|-+.|. ....++.+|+.+|..|..|+..
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~---~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALI---EQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999888888877764 3356677788888888777764
No 30
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.65 E-value=1.5 Score=37.24 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG------QAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~------~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
+.+|.+|+..|+.++..|..+|.. ...|..++..|+.++..+..||..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555542 345667777777777777777664
No 31
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.58 E-value=1.4 Score=35.11 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGEIGSF 162 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~~~igsf 162 (268)
+.=|.-+|+.|+.+|.+|...++. ...|+.||..||.+...-..||.+-+|-+
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667788888888888888763 56799999999999999888888777643
No 32
>PHA03155 hypothetical protein; Provisional
Probab=90.55 E-value=1.3 Score=37.53 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-HHhhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQG--------------QAALEAEVARLKCLLVD-IRGRIEG 157 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~--------------~a~LEaEn~~LRaqL~e-lr~rl~~ 157 (268)
-+|+|+.++.+|+-||.+|.++|.. .+.+-+-+.+|-++.++ |+.||..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe~kVrk 72 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKIRERVLK 72 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999952 33444445556554443 5555553
No 33
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=90.54 E-value=0.72 Score=46.70 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=38.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 99 VRKYREKKKA-RTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 99 ARRSR~RKQa-hleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+..+..--++ .+++||.|++.||.+.+.+.+++++ ...+|+|+.+|+.|+..+.....
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 3344444333 7888999999998887755555442 34788999999998865555433
No 34
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=90.48 E-value=1.3 Score=36.49 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
.++|..|-+++..|+....+|++. ++.|.-||..||..|.++..
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EE---N~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEE---NARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 467888888999998888888766 88999999999999999877
No 35
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=90.37 E-value=0.85 Score=33.61 Aligned_cols=46 Identities=30% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 105 KKKARTASLEDEVVRLRA----VNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 105 RKQahleeLE~QV~qLra----eN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
|++.+|++||.+++-=+. ++.....+| ..|+.||..||++|.-++.
T Consensus 1 kw~~Rl~ELe~klkaerE~R~~d~~~a~~rl---~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAEREARSLDRSAARKRL---SKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhHHhccCCchhHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 467778888776544331 133334443 6789999999999876654
No 36
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=90.32 E-value=0.46 Score=41.96 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl 155 (268)
|+++|.+..+--..|.-|..+|++-..|+.++.|||.++.||+.-|
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999988889999999988888875544
No 37
>PRK00736 hypothetical protein; Provisional
Probab=90.27 E-value=2 Score=32.50 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.+++.+||.+++.+.....+|-+.|.. -..++.+|+.++..|..|+..
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~---Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAE---QWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999888888777643 345667777777777777764
No 38
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.82 E-value=1.7 Score=34.40 Aligned_cols=53 Identities=26% Similarity=0.324 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGEIGSF 162 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~~~igsf 162 (268)
+.-|.-+|..|+..|++|....+. ..+|+.|+..|+.+-..-..||..-+|-+
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445677889999999999888772 56899999999999888888888777754
No 39
>PHA03162 hypothetical protein; Provisional
Probab=89.76 E-value=0.87 Score=39.39 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
-+|+.-+|+|.+|+.+|+-||..|.++|.
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999994
No 40
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=89.75 E-value=1.3 Score=36.05 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~r 130 (268)
.+.++++++++.++++|+++|++|..+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~e 56 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAE 56 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666555433
No 41
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=89.70 E-value=1 Score=42.08 Aligned_cols=48 Identities=27% Similarity=0.107 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
..-+-+...+|..+-.+||+++.++...+.....|++||.+||..|..
T Consensus 61 ~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 61 VLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566778888888888888888888888888899999999987664
No 42
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=89.63 E-value=2.2 Score=36.13 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~ 133 (268)
|..-+++|.+|+.+|+-||..|.++|..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567899999999999999999999963
No 43
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=88.63 E-value=1.9 Score=40.02 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024384 98 AVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIG 160 (268)
Q Consensus 98 SARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~ig 160 (268)
.=-+|++|+++..+-+...-.+=|....++..|+ ..||.||..||.++.+|+..+..-..
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~---~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRV---AELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888888888887777777777777777776 67888888888888888877665443
No 44
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=88.30 E-value=2.2 Score=35.49 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
.+++..|-.++..|+.+...|+++ ++.|+-||..||..|.++..
T Consensus 14 e~~l~~l~~el~~LK~~~~el~EE---N~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 14 EQNLGVLLKELGALKKQLAELLEE---NTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhc
Confidence 457788888888888888777766 78999999999999998744
No 45
>PRK00846 hypothetical protein; Provisional
Probab=87.82 E-value=4 Score=32.15 Aligned_cols=51 Identities=18% Similarity=0.073 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
-.++|++||.+++.......+|-+.|. ....++.+|+.++.-|.+|+....
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~---~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALA---DARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999998888887777763 356778888888888888888654
No 46
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=87.77 E-value=1.9 Score=36.39 Aligned_cols=47 Identities=26% Similarity=0.324 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
|.-=|++|+.||.|++.++..+..|.+|| ..||..+...|++...+.
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrI---kMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRI---KMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccc
Confidence 44457899999999999999999999997 788988888888766543
No 47
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=87.67 E-value=2.5 Score=35.71 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.+.+||.++..|-++...|.+.| ..+-.||..||-+...||.||..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l---~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHL---GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHhhHHHHHHHhCC
Confidence 56788888888888888887776 45677888888888888888765
No 48
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=87.64 E-value=2.5 Score=39.13 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 100 RRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
..-|-|=+++..|||+|+.+++.+.+.|..++ ..|.++|..|=.++.-|..
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev---~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREV---ESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 34466677789999999999999998887665 4566666666655544433
No 49
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.52 E-value=3.2 Score=35.26 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+.+.+.|+.++++|...+.++...|.. ...||.++..|..+|.++...+.
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888877763 56788888888888887766665
No 50
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.98 E-value=1.6 Score=44.29 Aligned_cols=24 Identities=46% Similarity=0.432 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+++.|+.|-+.|++||++|.+|.+
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467888888888888888887653
No 51
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.89 E-value=2.5 Score=42.93 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~------------~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
+=+.|.+|-++||+..+.+..+|+. ...|..|..+|+.+|.+|..||++
T Consensus 81 ~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 81 ENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456777777888776666666652 234455566666666667777653
No 52
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=86.28 E-value=4.8 Score=30.18 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
+.+++|..+|..|...-.+|...+ ..+.+++...+.+....-.||+--.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv---~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDV---NALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 468888888888888888887665 4566677767776666677776444
No 53
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.17 E-value=2.5 Score=44.26 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQG--------------QAALEAEVARLKCLLVD 150 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~--------------~a~LEaEn~~LRaqL~e 150 (268)
.+..+|+.++.+|+.++..|..+|.. ..+++.++..|+-.|.+
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555531 23455566666665555
No 54
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=85.80 E-value=1.2 Score=46.17 Aligned_cols=67 Identities=24% Similarity=0.236 Sum_probs=52.6
Q ss_pred CCCccccchHHHhhccCcccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 76 STDDTAESTEKKTKKRPLGNREAVRKYR---EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (268)
Q Consensus 76 ~~~d~~e~~d~KK~KRmlSNRESARRSR---~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LR 145 (268)
..|+..-...+|+.|-+.+--.|-+|-. .-=+++|.+|+.+-++||+||..|+++| +.|++|+.+||
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL---~~l~~En~~~k 343 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQL---DELVSENQRLK 343 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHhhcCcccc
Confidence 4456666777788887777776665544 3457889999999999999999999998 67888888875
No 55
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.42 E-value=5.9 Score=32.05 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQG------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
|++.++.|++.+.++...-++|..++.. ...|+-+++.+|..+..+.++|+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455555555555555555555555531 33444444444444444444443
No 56
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=84.86 E-value=8 Score=38.76 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=51.6
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDE-----------------------VVRLRAVNQQLLKRLQGQAALEAEV 141 (268)
Q Consensus 85 d~KK~KRmlSNRESARRSR~RKQahleeLE~Q-----------------------V~qLraeN~qL~~rL~~~a~LEaEn 141 (268)
++|.+||+..--|==||.|.+=..+|.+|-.- +..|++++++..+..+....|+..+
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n 306 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTN 306 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence 56777888888889999999988888888654 3677777777777766667777777
Q ss_pred HHHHHHHHHHHh
Q 024384 142 ARLKCLLVDIRG 153 (268)
Q Consensus 142 ~~LRaqL~elr~ 153 (268)
.+|+.++.+|..
T Consensus 307 ~~L~~rieeLk~ 318 (411)
T KOG1318|consen 307 QELALRIEELKS 318 (411)
T ss_pred HHHHHHHHHHHH
Confidence 777666666543
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.73 E-value=3.3 Score=42.72 Aligned_cols=47 Identities=30% Similarity=0.368 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
+.+|++++..++..+..|...+ ..|.+||.+|+.+|..++..++.++
T Consensus 150 l~~leAe~~~~krr~~~le~e~---~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDEL---KRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4444444444444444443333 3455666666666666666555543
No 58
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.56 E-value=3 Score=43.06 Aligned_cols=53 Identities=34% Similarity=0.411 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 024384 99 VRKYREKKKARTASLED-------EVVRLRAVNQQLLKRLQG------------QAALEAEVARLKCLLVDI 151 (268)
Q Consensus 99 ARRSR~RKQahleeLE~-------QV~qLraeN~qL~~rL~~------------~a~LEaEn~~LRaqL~el 151 (268)
-|.+|.|-|++|.+|-+ +|..|.++|..|...|.. ....|+|...+|..|.+.
T Consensus 33 ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~ 104 (546)
T KOG0977|consen 33 IRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDET 104 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHH
Confidence 47788888888777754 456666666666666641 334566666666655554
No 59
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=84.49 E-value=2.8 Score=40.75 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
.+.-.|.+|-++|++||.+|..++..+..+++|+.+||..+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456789999999999999999999888888899998887654
No 60
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.21 E-value=5.6 Score=35.84 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
++.-++.+..|+.|++.|+..|++|.+.+.
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777777777764
No 61
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.19 E-value=4.9 Score=28.49 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 113 LEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 113 LE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
||..-.-|++.-..|... +..|..|+..|++++..+.+++.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~---~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAE---YDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444455444444333 56777888888888888887764
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.94 E-value=6.7 Score=36.56 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=37.5
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 89 ~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
-+++..-.+++++.=.-++..+++|+.||.++..+.+.+.+|+.
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888888889999999999999999999998888874
No 63
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.77 E-value=5.3 Score=32.41 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL 148 (268)
...+|+.|+++++++|++|..+ +..|+.|+..|+...
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~---n~~L~~eI~~L~~~~ 64 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKAR---NDQLFAEIDDLKGGQ 64 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCcH
Confidence 5778999999999999888777 578889999998743
No 64
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.76 E-value=4.7 Score=38.25 Aligned_cols=47 Identities=26% Similarity=0.258 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el 151 (268)
-=.++++.++++.+.++.|+.+|++|...+ ..|..|+..||..+.+|
T Consensus 157 eleele~e~ee~~erlk~le~E~s~LeE~~---~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSRLEEML---KKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchhHHHHHHHHHHHh
Confidence 333344444444444444444444443332 22333444444444443
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.43 E-value=5.7 Score=39.86 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=37.8
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
++.+-..++=++..++....++..+.|+.+++.|+.++.+|...|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~ 83 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI 83 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677778888888888999999999999999999988875
No 66
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.64 E-value=12 Score=31.18 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=36.9
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
..+.|=..-||..-....++...++.|+..+.+|+.++..+.+++.
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888888888888888888888888888775
No 67
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=82.64 E-value=0.061 Score=52.07 Aligned_cols=48 Identities=31% Similarity=0.353 Sum_probs=42.4
Q ss_pred hHHHhhccCcccHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 024384 84 TEKKTKKRPLGNREAVRK---YREKKKARTASLEDEVVRLR-AVNQQLLKRL 131 (268)
Q Consensus 84 ~d~KK~KRmlSNRESARR---SR~RKQahleeLE~QV~qLr-aeN~qL~~rL 131 (268)
.+.|+..|+..|+.||-+ +|.||+....+|..||+.|. .++..|...+
T Consensus 151 ~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~i 202 (395)
T KOG1414|consen 151 PEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQI 202 (395)
T ss_pred chHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccc
Confidence 478899999999999999 99999999999999999999 7776654444
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.32 E-value=2.9 Score=43.95 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL 131 (268)
.+||.|+.+||.|-.+..+++
T Consensus 548 ~~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677777766655555444
No 69
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=82.30 E-value=9.1 Score=30.38 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=47.8
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 86 ~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
.++-.+.+.+=|++=..|.-+....++|+.+|..|.+...+|..+|.. .++...+|..--.++..+|...
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~---~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQ---AEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667776666666666699999999999999999999853 3444455555555555555543
No 70
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.16 E-value=9.2 Score=33.39 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+...|++|+.++..|+.+..+|...|.
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ 140 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELK 140 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555444444443
No 71
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=81.66 E-value=6.9 Score=33.33 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKC 146 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRa 146 (268)
-..+||+-||.+..+|.+|. .+||.||..||.
T Consensus 64 AVREEVe~Lk~qI~eL~er~---~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERN---SALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 34567777777777777774 678888888875
No 72
>PRK11637 AmiB activator; Provisional
Probab=81.50 E-value=8.9 Score=37.07 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 101 KYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 101 RSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
+....-++.++.|+.++..+..+...+..+|
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i 98 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTL 98 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555555555555444444444
No 73
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=81.28 E-value=21 Score=29.54 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el 151 (268)
+.+..+..+-+...++|+.+....+.-.+.....|..|+..-.++..||.++..+
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~ 71 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQEL 71 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555666666677777776666666666666655444444444444444433
No 74
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=80.98 E-value=9.8 Score=29.07 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 024384 115 DEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 115 ~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~elr 152 (268)
...+.|+.|+...+.+|. ....|.+|+..|+.+|...+
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555555543 24455566666666655443
No 75
>PRK09039 hypothetical protein; Validated
Probab=80.95 E-value=13 Score=35.70 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=3.7
Q ss_pred HHHHHHhhhh
Q 024384 147 LLVDIRGRIE 156 (268)
Q Consensus 147 qL~elr~rl~ 156 (268)
++.+|..+|+
T Consensus 173 ~i~~L~~~L~ 182 (343)
T PRK09039 173 KIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 76
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.77 E-value=4.1 Score=29.65 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
.+.++.+++|+.++++|+++|.+|..++
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888887765554
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.44 E-value=9.2 Score=32.09 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhhh
Q 024384 140 EVARLKCLLVDIRGRIE 156 (268)
Q Consensus 140 En~~LRaqL~elr~rl~ 156 (268)
++..|+.++.++..|.+
T Consensus 69 ~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 78
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=79.82 E-value=9.6 Score=34.20 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL 131 (268)
|.+.|+..+..|+.+...+.+++
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~i 159 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEI 159 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 79
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=79.76 E-value=8.5 Score=35.94 Aligned_cols=49 Identities=22% Similarity=0.161 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQ-AALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~-a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.+.+--..+.+|++||++|++++... +.+......|+.+...||.-|+-
T Consensus 60 ~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 60 GISENLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444456778999999999998654 56666666688888888887764
No 80
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.62 E-value=19 Score=32.51 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL 131 (268)
|+.++++.+|...|..+-.+|.+++
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~ 65 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREI 65 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 81
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.48 E-value=17 Score=32.38 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
-.+.+..+++|..+++.|+++|..|.+++ ..++.++..|-..+...|
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~---~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRL---STIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666665555554 344555555544443333
No 82
>PRK11637 AmiB activator; Provisional
Probab=79.32 E-value=13 Score=35.86 Aligned_cols=35 Identities=6% Similarity=0.125 Sum_probs=18.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQ 126 (268)
Q Consensus 92 mlSNRESARRSR~RKQahleeLE~QV~qLraeN~q 126 (268)
....++.....+..+++.+.+++.+...|..+.++
T Consensus 182 L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 182 LAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555556666666665555554444
No 83
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.16 E-value=20 Score=37.96 Aligned_cols=68 Identities=24% Similarity=0.404 Sum_probs=42.0
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H--HHHHHHHHHH---HHHHHHHhhhhh
Q 024384 97 EAVRKY-REKKKARTASLEDEVVRLRAVNQQLLKRLQGQ-------------A--ALEAEVARLK---CLLVDIRGRIEG 157 (268)
Q Consensus 97 ESARRS-R~RKQahleeLE~QV~qLraeN~qL~~rL~~~-------------a--~LEaEn~~LR---aqL~elr~rl~~ 157 (268)
+..|.+ |+ -++.++.|...+.-|+..|++|...|... + .||--...|+ .++.+|..+|..
T Consensus 576 ~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 576 QELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 33 45678889999999999999999888621 1 1111112222 345556777777
Q ss_pred hccccccc
Q 024384 158 EIGSFPYQ 165 (268)
Q Consensus 158 ~igsfp~q 165 (268)
-+.++|..
T Consensus 655 ~~av~p~~ 662 (697)
T PF09726_consen 655 LLAVMPSD 662 (697)
T ss_pred HHhcCCcc
Confidence 77777754
No 84
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.89 E-value=16 Score=28.17 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024384 135 AALEAEVARLKCLLVDI 151 (268)
Q Consensus 135 a~LEaEn~~LRaqL~el 151 (268)
..|..++..|+.+...+
T Consensus 35 ~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 35 NELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 85
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.88 E-value=3.5 Score=31.33 Aligned_cols=30 Identities=33% Similarity=0.257 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (268)
Q Consensus 115 ~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaq 147 (268)
++|+-||.....|..+. ..||.||..||+.
T Consensus 14 EEVevLK~~I~eL~~~n---~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERN---SQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc
Confidence 45666666666666553 5678888888874
No 86
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=78.73 E-value=22 Score=25.84 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024384 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~igsfp 163 (268)
|++...+..|++++.+++..+...-.+.-..|+.++....... +...+...+.+|+.+.. .+|..|
T Consensus 8 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~-d~~~~~~~~k~l~~~Wk-~iG~vp 73 (77)
T PF03993_consen 8 RAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESE-DWKEAAEEIKELQQEWK-EIGPVP 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHH-HcCCCC
Confidence 5677888999999999999999888888888888886432211 13344444455555444 345444
No 87
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.64 E-value=15 Score=32.47 Aligned_cols=12 Identities=42% Similarity=0.440 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 024384 137 LEAEVARLKCLL 148 (268)
Q Consensus 137 LEaEn~~LRaqL 148 (268)
|+.++..|+.+|
T Consensus 115 l~~~~~~l~~el 126 (188)
T PF03962_consen 115 LKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 88
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=78.25 E-value=1.9 Score=31.49 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLK 129 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~ 129 (268)
+.|+.|||+||.-||+-|..|..
T Consensus 17 ~vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHHHh
Confidence 45789999999999999988754
No 89
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.99 E-value=16 Score=28.77 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.++|.+||.+++--......|-..|. ...-.+.+++.+|..|.+|+..
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~la---Eq~~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALA---EQQLVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999877666666655553 3355678888888888888764
No 90
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.77 E-value=13 Score=34.65 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=7.0
Q ss_pred ccccCCCCCCCC
Q 024384 210 IELNGQGFSGCE 221 (268)
Q Consensus 210 ~~~~gq~~~~c~ 221 (268)
|.+.|+.=+||-
T Consensus 193 vpl~g~~C~GC~ 204 (239)
T COG1579 193 VPLEGRVCGGCH 204 (239)
T ss_pred EeecCCcccCCe
Confidence 456666666663
No 91
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=77.64 E-value=18 Score=29.30 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 105 KKKARTASLEDEVVRL--RAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 105 RKQahleeLE~QV~qL--raeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
+...++..||.+|+.| +.+-.+|.-+| ..++.++..|++++.-+..
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l---~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLEL---AELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHH
Confidence 4467899999999999 88888888887 4456666666666655443
No 92
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=77.03 E-value=2.4 Score=33.99 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL 131 (268)
+.++.|..++.+++.+...+.++|
T Consensus 23 ~~l~~~~~~~~~~~~~l~~~~~~l 46 (144)
T PF04350_consen 23 ANLEELKKQLEQLEQQLEELLKKL 46 (144)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444433
No 93
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=76.97 E-value=8.4 Score=38.27 Aligned_cols=29 Identities=34% Similarity=0.322 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|-+.+...||.-|.+|+.||++|.-+|+
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444555555666666666666666665
No 94
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=76.97 E-value=31 Score=29.01 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=39.6
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 90 KRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 90 KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
.-+..-.|...-||..=.+.-++|+..+..|++++..+.+++. .|+++++.++..+..
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~---eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIA---ELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4444556677777777777777888888888888888877764 456666555554443
No 95
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=76.89 E-value=14 Score=35.28 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=41.7
Q ss_pred cchHHHhhccCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 024384 82 ESTEKKTKKRPL-----GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 82 e~~d~KK~KRml-----SNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~elr 152 (268)
|..+.||-|-++ +.|-=||-+-+ ...+.+|+++-..|+.+|+.|...-. .+..|..+...||..|+++.
T Consensus 68 EK~~RrKLKNRVAAQtaRDrKKaRm~em--e~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 68 EKVQRRKLKNRVAAQTARDRKKARMEEM--EYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 445555555443 34443433322 34688999999999999988766532 24455666666666666643
No 96
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=76.80 E-value=4.4 Score=30.79 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL 131 (268)
|.+|.+|++++.+|+.||.-|+...
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678888888888888888776654
No 97
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=76.59 E-value=12 Score=32.32 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~ 132 (268)
++++|..+.++|+.+...|..+|+
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 98
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=76.39 E-value=17 Score=29.00 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=26.3
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 89 ~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~ 133 (268)
+.|-+..-+.+++-+..|.+.+..|..++..|+.+.+.+..+|..
T Consensus 62 ~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 62 RERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555566666666666666666666666666655543
No 99
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=76.18 E-value=29 Score=31.64 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+-+..+..|+.++..|+..|..|..+|.
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHH
Confidence 4556677788888888888888888775
No 100
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=76.05 E-value=26 Score=31.75 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 113 LEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 113 LE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.-....+|++||++|.+++........+...|+++...|+..++
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456788999999998876555555555677777777887665
No 101
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.96 E-value=7.2 Score=30.65 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=20.1
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 98 AVRKYREKKKA----RTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 98 SARRSR~RKQa----hleeLE~QV~qLraeN~qL~~rL 131 (268)
|.++-|.||.+ +++.|..++..|..+|..|..++
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666644 45556666666666666665554
No 102
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=75.91 E-value=13 Score=29.97 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQG---QAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~~---~a~LEaEn~~LRaqL~elr~rl 155 (268)
.|+++.+.|+.|.+.|..++.. ......||.+||.++..++...
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888864 3345567777777777766544
No 103
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=75.88 E-value=20 Score=34.71 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 024384 137 LEAEVARLKC 146 (268)
Q Consensus 137 LEaEn~~LRa 146 (268)
||-+++.+++
T Consensus 96 Leddlsqt~a 105 (333)
T KOG1853|consen 96 LEDDLSQTHA 105 (333)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 104
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=75.86 E-value=14 Score=32.71 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~ 133 (268)
+=.|-|+..||.+|++|..+|+.
T Consensus 43 SL~erQ~~~LR~~~~~L~~~l~~ 65 (225)
T PF04340_consen 43 SLVERQLERLRERNRQLEEQLEE 65 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666554
No 105
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=75.52 E-value=8.2 Score=34.80 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024384 136 ALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~rl~ 156 (268)
.++.|+..|+.++..|..+++
T Consensus 173 ~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 173 RVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555555555
No 106
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.23 E-value=27 Score=29.05 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLL 128 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~ 128 (268)
+..+++++.++..++..-.+|.
T Consensus 79 ~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 79 KEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333333
No 107
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=75.11 E-value=18 Score=37.52 Aligned_cols=65 Identities=25% Similarity=0.269 Sum_probs=33.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 92 mlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+.-.+........-+.++++|+.++.+.+.++.+|..+... ...+..|+..|..++.+++.||.
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~ 223 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIR 223 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555555555555555555444331 34556666666666666655554
No 108
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.10 E-value=36 Score=29.72 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
-+...+..+.+|+.+++.+...++.|...+.
T Consensus 124 ~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 124 ELAQLEEKIKDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677777777777777777776664
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.92 E-value=11 Score=34.75 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
-=+.+|++|..+|.+||.+++++..+|+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~ 85 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLN 85 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3477888888888888888888777764
No 110
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=74.86 E-value=23 Score=31.32 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhhh
Q 024384 140 EVARLKCLLVDIRGRIE 156 (268)
Q Consensus 140 En~~LRaqL~elr~rl~ 156 (268)
+...++.++..+...+.
T Consensus 127 ~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 127 ELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 111
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=74.44 E-value=28 Score=27.44 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
-+.||+||..|..++.+|..++.
T Consensus 63 IA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 63 IALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888877654
No 112
>PRK10963 hypothetical protein; Provisional
Probab=74.29 E-value=12 Score=33.51 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024384 115 DEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 115 ~QV~qLraeN~qL~~rL~ 132 (268)
-||..||.+|++|..+|.
T Consensus 44 rQ~~~LR~r~~~Le~~l~ 61 (223)
T PRK10963 44 WQMARQRNHIHVLEEEMT 61 (223)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 113
>PRK11546 zraP zinc resistance protein; Provisional
Probab=74.15 E-value=23 Score=30.89 Aligned_cols=63 Identities=22% Similarity=0.214 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
+.+...+.+=+..+++|.+++-.-+.|-+.|+..=. .-.+|..|+..||.+|.+.|-..+.++
T Consensus 50 a~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 50 AAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778888888877777776666644322 245788999999999998877665443
No 114
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=74.07 E-value=11 Score=32.81 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcc
Q 024384 138 EAEVARLKCLLVDIRGRIEGEIG 160 (268)
Q Consensus 138 EaEn~~LRaqL~elr~rl~~~ig 160 (268)
..|+..|+.++..++-.++....
T Consensus 87 ~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 87 QQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444
No 115
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=73.90 E-value=11 Score=37.91 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=53.9
Q ss_pred hhccCcccHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024384 88 TKKRPLGNREAVRKYREKKK------------ARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQ------------ahleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~el 151 (268)
-+.|...-|++-..+|.|.+ .-+..||.|+..++++-.+|..-+. ....|+++++.|+.|+...
T Consensus 254 Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~e 333 (434)
T PRK15178 254 AQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQ 333 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 35667777888888887763 5677888888888888887766554 3567889999999999999
Q ss_pred Hhhhhh
Q 024384 152 RGRIEG 157 (268)
Q Consensus 152 r~rl~~ 157 (268)
++++.+
T Consensus 334 r~kl~~ 339 (434)
T PRK15178 334 RNRLSN 339 (434)
T ss_pred HHHhhc
Confidence 988864
No 116
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=73.81 E-value=30 Score=31.08 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=39.0
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 86 ~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
++|+.+..++-+.|.+.+..=++-+++.|.++.+-|.+-++++....
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar 129 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAR 129 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888889999999999999999999999998888877654
No 117
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.35 E-value=9.7 Score=34.86 Aligned_cols=26 Identities=42% Similarity=0.477 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccc
Q 024384 137 LEAEVARLKCLLVDIRGRIEGEIGSF 162 (268)
Q Consensus 137 LEaEn~~LRaqL~elr~rl~~~igsf 162 (268)
|..++.+||+.|...|.+.+....+|
T Consensus 136 l~~e~erL~aeL~~er~~~e~q~~~F 161 (202)
T PF06818_consen 136 LRREVERLRAELQRERQRREEQRSSF 161 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55667777777777666665443333
No 118
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.04 E-value=21 Score=30.26 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024384 135 AALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~ 153 (268)
..|+.|+..|...|..|++
T Consensus 119 ~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555544
No 119
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=72.97 E-value=6.8 Score=39.91 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=49.4
Q ss_pred cchHHHhhccCcccHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 82 ESTEKKTKKRPLGNREAVRKYREKKKAR----------TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVA 142 (268)
Q Consensus 82 e~~d~KK~KRmlSNRESARRSR~RKQah----------leeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~ 142 (268)
=....||.|.|.+--||-||..+==..+ =.+|..+|.+|..+|..|+.+|+.++.+..+++
T Consensus 250 LKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~a 320 (472)
T KOG0709|consen 250 LKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVA 320 (472)
T ss_pred HHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcc
Confidence 3456778899999999999987654433 358999999999999999999988777776653
No 120
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=72.53 E-value=21 Score=27.68 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL 131 (268)
+.+.|.++..|+.||=.|.=||
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI 23 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRI 23 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH
Confidence 3567777788888776666555
No 121
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=72.21 E-value=31 Score=30.85 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=37.6
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
..-++.+.+-+.-..+=..-++++..++.++..|+-+++.|..++.
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~ 117 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFE 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888889999999999999988888863
No 122
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=71.04 E-value=20 Score=37.63 Aligned_cols=23 Identities=48% Similarity=0.525 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~ 132 (268)
-.+|+.+|++||+++++|.+.|.
T Consensus 81 r~~L~~everLraei~~l~~~I~ 103 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIE 103 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666554
No 123
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=70.71 E-value=41 Score=26.66 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~el 151 (268)
-++|..++..|+..-..|..|+. ++..|+.||..|..-+..|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888874 2445555555555443333
No 124
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=70.47 E-value=8.9 Score=30.42 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
-|+++++.|...+..|+++|.+|..+|.
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999988887774
No 125
>PRK09039 hypothetical protein; Validated
Probab=70.27 E-value=19 Score=34.59 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL 131 (268)
.+..|..|++.||++...|...|
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 126
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=69.87 E-value=21 Score=37.71 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 024384 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ---GQAALEAEVARLKC 146 (268)
Q Consensus 95 NRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~---~~a~LEaEn~~LRa 146 (268)
=+.|-+.-|..=++.+..||.|++.+..+..+|.++|+ +|..+..|+.+||+
T Consensus 304 ~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 304 LEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 36777888999999999999999999999999999997 35566666666653
No 127
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.72 E-value=24 Score=35.04 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el 151 (268)
-|+|.++.++.|..+.+.|+..-+.|..-. ..|+++..+|..++..|
T Consensus 219 lR~r~eeeme~~~aeq~slkRt~EeL~~G~---~kL~~~~etLEqq~~~L 265 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRTEEELNIGK---QKLVAMKETLEQQLQSL 265 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhH---HHHHHHHHHHHHHHHHH
Confidence 355666677777777766666655554443 34555555555555443
No 128
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=69.07 E-value=39 Score=32.30 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL 131 (268)
+.++.+++++++.+++-+.+..++
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 129
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.77 E-value=20 Score=34.00 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
+..+++.+||.+..+|.++..+|..++
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555444444444444443
No 130
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=68.32 E-value=37 Score=32.61 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=26.3
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 024384 86 KKTKKRPLGNREAVRKYREKKKARTAS---LEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 86 ~KK~KRmlSNRESARRSR~RKQahlee---LE~QV~qLraeN~qL~~r 130 (268)
.+|+-|..+||+..++-+++++++... +..+|.+|+..+.+|.++
T Consensus 275 ~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i~~l~~i~~ei~~~ 322 (387)
T PF07767_consen 275 NKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQIDRLKEIAKEIEKE 322 (387)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888877777777664443 344445555555555444
No 131
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=68.27 E-value=21 Score=25.84 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARL 144 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~L 144 (268)
..+..+..|+.+|+.++++|..+ +..|+.++..|
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e---~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKE---NEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 34556666677776666666555 24455565555
No 132
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=68.15 E-value=57 Score=28.88 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~ 132 (268)
..+|+.++..|+.++.+|..++.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~ 144 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQ 144 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666654
No 133
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=67.86 E-value=56 Score=28.47 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=37.3
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+..+.-+.|.+.+..=++-+++.+.++...|.+-++++....
T Consensus 62 ~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~ 107 (181)
T PRK13454 62 ERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETR 107 (181)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777888888888888888899999888888888887764
No 134
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=67.69 E-value=21 Score=29.29 Aligned_cols=41 Identities=29% Similarity=0.254 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
....|..+++.++++|+.|..+ ...|++|+..|+.....|.
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~---~~~l~~ei~~L~dg~~~i~ 91 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSAR---NTALEAEIKDLKDGRDYIE 91 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcccHHHHH
Confidence 3445666666777777777666 4677888888877733343
No 135
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.39 E-value=27 Score=34.84 Aligned_cols=65 Identities=25% Similarity=0.269 Sum_probs=43.5
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHH
Q 024384 84 TEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG------------------QAALEAEVARLK 145 (268)
Q Consensus 84 ~d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~------------------~a~LEaEn~~LR 145 (268)
.=+-|.|+...|-|--|..|+--++| ..+.++|+..|++|+..|-+ ...++.||.+|.
T Consensus 72 llq~kirk~~e~~eglr~i~es~~e~----q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lq 147 (401)
T PF06785_consen 72 LLQTKIRKITEKDEGLRKIRESVEER----QQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQ 147 (401)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 34557888899999999888654333 34456677777777776631 234667777777
Q ss_pred HHHHHHH
Q 024384 146 CLLVDIR 152 (268)
Q Consensus 146 aqL~elr 152 (268)
.+|.++.
T Consensus 148 lqL~~l~ 154 (401)
T PF06785_consen 148 LQLDALQ 154 (401)
T ss_pred HhHHHHH
Confidence 7777653
No 136
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=67.19 E-value=26 Score=28.16 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ-------GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~-------~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+..++.||+.+++.+..-..+..+|. .-..+|.|...|+.++.....++.
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~ 60 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELK 60 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 35789999999999999999988886 256788888888888776655444
No 137
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=67.09 E-value=27 Score=38.36 Aligned_cols=63 Identities=29% Similarity=0.376 Sum_probs=30.7
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024384 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~r 154 (268)
..+|.+.....+.+++..+. +++.++.++..++++...+..++. ..+.++..|+.++.+++..
T Consensus 220 ~e~~~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~e~~~~ 282 (1163)
T COG1196 220 AELRELELALLLAKLKELRK-ELEELEEELSRLEEELEELQEELE---EAEKEIEELKSELEELREE 282 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333 455566666666655555555553 2344444444444444433
No 138
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.91 E-value=30 Score=38.47 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=48.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 93 LGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 93 lSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+..+..+.-+.+++..+.+|+.++..++.+..+|..+++....++.++..|..++..++..|.
T Consensus 842 ~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~ 905 (1311)
T TIGR00606 842 VSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIK 905 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888888888899998888888888888888887767777777777766666655444
No 139
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=66.63 E-value=22 Score=26.52 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
.....++.++.++++|+.+|.+|..++
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777776665554
No 140
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=66.36 E-value=29 Score=33.28 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=48.5
Q ss_pred hHHHhhccCcccHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 024384 84 TEKKTKKRPLGNRE-----AVRKYREKK-KARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 84 ~d~KK~KRmlSNRE-----SARRSR~RK-QahleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~elr~ 153 (268)
.++|=+|=|++|-. ++..|.--- |..|++||+.+.+|+.++....+.+. .+..|..|+..||.+|.+.-.
T Consensus 89 vEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 89 VEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888988754 777777666 77899999999999988854444332 244556666666666644433
Q ss_pred hh
Q 024384 154 RI 155 (268)
Q Consensus 154 rl 155 (268)
.|
T Consensus 169 li 170 (302)
T PF09738_consen 169 LI 170 (302)
T ss_pred HH
Confidence 33
No 141
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=66.25 E-value=18 Score=34.10 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~ 132 (268)
++.|+.++..||.+|++|..+++
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~ 56 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELD 56 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 45677777777777777766653
No 142
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=66.14 E-value=7.7 Score=36.22 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 121 RAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 121 raeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
...|..-++|| .+||.|+++||+|++.|...=+
T Consensus 114 ~~~~~~AlqKI---sALEdELs~LRaQIA~IV~~qe 146 (253)
T PF05308_consen 114 LPANEAALQKI---SALEDELSRLRAQIAKIVAAQE 146 (253)
T ss_pred cCCCHHHHHHH---HHHHHHHHHHHHHHHHHHhccc
Confidence 33444445555 7899999999999999866544
No 143
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=66.12 E-value=27 Score=29.65 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=33.8
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.+--+|-+.|.||--++|.++ +.++.+|+.|++....+..++.
T Consensus 34 ae~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~ 76 (126)
T PF09403_consen 34 AEYQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIE 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHH
Confidence 456678899999988777655 4788888888888888877775
No 144
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=65.76 E-value=62 Score=27.19 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 024384 139 AEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 139 aEn~~LRaqL~elr~rl~ 156 (268)
.+|..||..+.+++.-..
T Consensus 96 E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 96 EEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666555433
No 145
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=65.66 E-value=31 Score=35.18 Aligned_cols=26 Identities=35% Similarity=0.268 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL 131 (268)
=++++.++|.++.+|+.||.||.++.
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999998875
No 146
>PF15058 Speriolin_N: Speriolin N terminus
Probab=65.66 E-value=16 Score=33.64 Aligned_cols=37 Identities=30% Similarity=0.308 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el 151 (268)
+-|.+|+++|=.||.+|++.+ .|..||-.||..|.+.
T Consensus 8 eGlrhqierLv~ENeeLKKlV----rLirEN~eLksaL~ea 44 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLV----RLIRENHELKSALGEA 44 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 457788999999999998874 6889999999988774
No 147
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.61 E-value=24 Score=31.05 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 98 AVRKYREKKKARTASLEDEVVRLRAV 123 (268)
Q Consensus 98 SARRSR~RKQahleeLE~QV~qLrae 123 (268)
++-+.|..||.+.+.+.+.+...+.+
T Consensus 113 ~~l~~R~~~q~~~e~~~e~L~~k~~~ 138 (200)
T cd07624 113 DVLKRRDQFQIEYELSVEELNKKRLE 138 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888877777666654
No 148
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=65.54 E-value=39 Score=26.58 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQG----Q----AALEAEVARLKCLLV 149 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~----~----a~LEaEn~~LRaqL~ 149 (268)
+-+++|.++..--+|.+.+..+|-+ + ..-|.|+++||.+|.
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777767777777776642 1 234677888887764
No 149
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=65.35 E-value=60 Score=25.39 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024384 136 ALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~ 153 (268)
.|.+++..|+.++..+..
T Consensus 71 ~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555544433
No 150
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.31 E-value=55 Score=28.97 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~r 154 (268)
.-...+..+++++.++..|+.+.+++.+++. ....++..+|..+...+..
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~---~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIE---QKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666666653 2334444444444444433
No 151
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=65.18 E-value=27 Score=28.30 Aligned_cols=29 Identities=17% Similarity=-0.016 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 119 RLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 119 qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
+++.++.+|.+++ ..|+.|++.||..+.-
T Consensus 75 ~~~~ei~~L~~el---~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 75 AAMKQIKELQRLL---GKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3444444444443 3456677777765443
No 152
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=65.16 E-value=39 Score=25.92 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKC 146 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~~-~a~LEaEn~~LRa 146 (268)
.|..++..++.++.+|+.+... -..+|+-+.+|++
T Consensus 25 ~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 25 LLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444444445444444431 2234444444443
No 153
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=65.02 E-value=40 Score=31.10 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~ 132 (268)
-+-+|..|+..|+.|..+|.-.+.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E 78 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQ 78 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 356788888888888888877764
No 154
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=64.91 E-value=19 Score=37.22 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhc
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD---IRGRIEGEI 159 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e---lr~rl~~~i 159 (268)
-||+-++||..||.+|+--...|.+.- -.|+..||..|.+ +|.+|+.+|
T Consensus 566 ~~k~s~delr~qi~el~~ive~lk~~~------~kel~kl~~dleeek~mr~~lemei 617 (627)
T KOG4348|consen 566 VKKNSLDELRAQIIELLCIVEALKKDH------GKELEKLRKDLEEEKTMRSNLEMEI 617 (627)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHhhH
Confidence 478899999999999987666665442 3455555555544 455554443
No 155
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=64.77 E-value=6.5 Score=28.28 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRL 120 (268)
Q Consensus 105 RKQahleeLE~QV~qL 120 (268)
|.++++++||.|+++|
T Consensus 52 ~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 52 RLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3334444444444444
No 156
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=64.68 E-value=27 Score=31.14 Aligned_cols=42 Identities=33% Similarity=0.445 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl 155 (268)
..|+.+...|+.++.+|..+ +..|+.|+..|..++..+..-.
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~---~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKR---NEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444 4667777777777666654433
No 157
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=64.37 E-value=75 Score=26.78 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=37.2
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+..+.-+.|.+.+..=.+..++.+.++...+.+-++++....
T Consensus 53 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~ 98 (156)
T CHL00118 53 ERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQ 98 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777888888888888888888888888888888888777664
No 158
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=64.21 E-value=79 Score=26.08 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=38.0
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+..++-+.|...|..=++.+++.+.++.+.+.+-.+++....
T Consensus 35 ~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~ 80 (156)
T PRK05759 35 ERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAK 80 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888999999999999999999888888888877764
No 159
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.10 E-value=29 Score=33.09 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+...++|..++..+.+++..|++++.
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~ele 159 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELE 159 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555553
No 160
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=64.03 E-value=7.2 Score=27.61 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=9.0
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~r 130 (268)
|+|+...|||=|+..=... ..+.+||.++.+|..||-.|..+
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~ 43 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLREL 43 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHH
Confidence 4556666777666543332 34666777777777666666554
No 161
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=63.74 E-value=49 Score=27.80 Aligned_cols=61 Identities=26% Similarity=0.360 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR-------LQ----GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV~qLraeN~qL~~r-------L~----~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
|++.--||.-.+.++..|+..++.++..+.+|.+. ++ ....+...+..|.+++.+++.-|+
T Consensus 4 ~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 4 KEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666665555554444444322 11 123444445555566666555444
No 162
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.72 E-value=47 Score=34.22 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=31.8
Q ss_pred ccCcccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 90 KRPLGNREAVRKYREKKKAR----TASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 90 KRmlSNRESARRSR~RKQah----leeLE~QV~qLraeN~qL~~rL~ 132 (268)
+--++|=||++++=+||.++ ++++..|++.++.+|..|.+.++
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~ 413 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD 413 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55677888888888887655 45677777888888877776654
No 163
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=63.55 E-value=55 Score=28.66 Aligned_cols=62 Identities=23% Similarity=0.348 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQ-AALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~~rL~~~-a~LEaEn~~LRaqL~elr~rl~~~igsfp 163 (268)
.+..-++.|..|..++.+-+.+-+.++..|... ..+..+...|+.....+...|.+..|..|
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~ 166 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIP 166 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHH
Confidence 344555677777777777777777777777653 34666777777777777777766665544
No 164
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=63.54 E-value=61 Score=29.83 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=31.6
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+++..++-+.|.+.+..=++.+++-+.++..++.+-++++....
T Consensus 36 eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~ 81 (250)
T PRK14474 36 KRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQ 81 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777777777777666665553
No 165
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.52 E-value=24 Score=37.78 Aligned_cols=36 Identities=33% Similarity=0.257 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRL----QGQAALEAEVARLK 145 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL----~~~a~LEaEn~~LR 145 (268)
.+.||.|..+||.+..++..|- ++|..||.||.-|.
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4555555666666555555442 23444554444333
No 166
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=63.47 E-value=12 Score=30.73 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQG----------QAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~----------~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
+-+.+|++|+++|+.+..++..+..+ ...|+-+...|+....+|..|.....
T Consensus 2 k~~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~eieI~d~eL~~~FeeIa~RFrk~~ 63 (92)
T PF07820_consen 2 KSSSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEIEISDAELQAAFEEIAARFRKGK 63 (92)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHHHhccc
Confidence 34678889999999888888887653 22344566889999999988877544
No 167
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=63.35 E-value=43 Score=24.69 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.+.++.|+.++..|+.+...+..+|+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35677888888888888888888886
No 168
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=63.32 E-value=26 Score=25.36 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL 131 (268)
..++.|+.+...|+.++..|...+
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555554444443
No 169
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=63.17 E-value=50 Score=24.75 Aligned_cols=22 Identities=9% Similarity=0.297 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL 131 (268)
+..|+..+..+|++|++|.+.+
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554
No 170
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=62.97 E-value=54 Score=29.84 Aligned_cols=40 Identities=30% Similarity=0.328 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
+..+..++..++...+.|..+| ..|++.+..|..++.++.
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el---~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAEL---ESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhh---hccccchhhhhhhHHHHH
Confidence 3333344444444444444333 233334444444444433
No 171
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=62.53 E-value=65 Score=30.84 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+..|++++.++.++.++++||.
T Consensus 216 L~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 216 LKQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777654
No 172
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.49 E-value=79 Score=27.36 Aligned_cols=40 Identities=30% Similarity=0.293 Sum_probs=24.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 92 mlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
...|++.|-+==+-+++-+..|++++..|..+.++|...|
T Consensus 36 ~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 36 SQENKECLILDAENSKAEIETLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666566666666666666666666666665554
No 173
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=62.39 E-value=42 Score=30.04 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=15.0
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 90 KRPLGNREAVRKYREKKKARTASLEDEVVRL 120 (268)
Q Consensus 90 KRmlSNRESARRSR~RKQahleeLE~QV~qL 120 (268)
+.+|...-+.+..+.+++.++..||.++.+-
T Consensus 92 ~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 92 RSRLNKLLSLKDDQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555554444
No 174
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.13 E-value=33 Score=24.29 Aligned_cols=35 Identities=34% Similarity=0.330 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL 148 (268)
+-|-..-..|++++..|.+. ...|.+|+..|+..+
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E---~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKE---NEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Confidence 34555555666666555554 355667777776654
No 175
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=62.02 E-value=73 Score=28.40 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
++.++.|+.++.+++..-.+|..+|. .|+..+..+|....
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~---~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIA---KLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44555666666666666666666553 34444444444433
No 176
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.32 E-value=38 Score=34.86 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=17.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 94 GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 94 SNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
+-=||.|.|++ .++.+++. +||+.+++.+..++
T Consensus 328 sqleSqr~y~e---~~~~e~~q--sqlen~k~~~e~~~ 360 (493)
T KOG0804|consen 328 SQLESQRKYYE---QIMSEYEQ--SQLENQKQYYELLI 360 (493)
T ss_pred hhhhHHHHHHH---HHHHHHHH--HHHHhHHHHHHHHH
Confidence 34577888887 55555555 34444444444433
No 177
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=61.19 E-value=21 Score=28.37 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQ 134 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~ 134 (268)
..|.+.++|+.+|.....+|..+|..|
T Consensus 12 ~kL~~K~eEI~rLn~lv~sLR~KLiKY 38 (76)
T PF11544_consen 12 KKLNDKQEEIDRLNILVGSLRGKLIKY 38 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777776543
No 178
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.15 E-value=57 Score=33.48 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhc-ccccc
Q 024384 136 ALEAEVARLKCLLVDIRGRIEGEI-GSFPY 164 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~rl~~~i-gsfp~ 164 (268)
.|+++...|+.++.+.+.++.... +.+|+
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~~~~~p~ 295 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELAADPLPL 295 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 566677777777777766666444 34454
No 179
>PRK15396 murein lipoprotein; Provisional
Probab=60.92 E-value=48 Score=26.16 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
.+++|..||..|..+-.+|...++ .+..++..-+.+....-.||+--.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~---~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVN---AMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777766553 333444444444444555555443
No 180
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=60.71 E-value=36 Score=32.00 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 115 ~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
....+|..+|++|.+++.+...+..++..|+.+...|+.-++...
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 66 KSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 344677788999999999888999999999999999998877544
No 181
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=60.59 E-value=5.3 Score=31.83 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.+|+.|..++..|..+|..|..++.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~ 49 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIE 49 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777776664
No 182
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=60.48 E-value=44 Score=29.62 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhh
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAAL--EAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~~a~L--EaEn~~LRaqL~elr~rl~~ 157 (268)
=++|++.|++++++|+..-+++...+-.|..| ..|+..+..+|..|..+|..
T Consensus 90 Le~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 90 LEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777766666666666544433 35677777777777777664
No 183
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=60.43 E-value=91 Score=26.89 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=36.6
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+...+-+.|.+.|..=++.+++-+.++.+-+.+-++++....
T Consensus 58 ~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~ 103 (184)
T PRK13455 58 KRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAK 103 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777888888888888888888888888888888877754
No 184
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.40 E-value=28 Score=32.29 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccc
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQ 165 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~igsfp~q 165 (268)
-|++.++.|+.+-++|+++-++=..+ -+-...||+|+.+++.+++.-.-.+|-+
T Consensus 46 ~k~eel~~~~~eEe~LKs~~q~K~~~-------aanL~~lr~Ql~emee~~~~llrQLPs~ 99 (211)
T COG3167 46 GKLEELEELEAEEEELKSTYQQKAIQ-------AANLEALRAQLAEMEERFDILLRQLPSD 99 (211)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 35666666666666666554433222 3445668888888888777554455543
No 185
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=60.16 E-value=92 Score=26.60 Aligned_cols=46 Identities=4% Similarity=0.075 Sum_probs=35.0
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.|+.+..+.-+.|...|..=++-+++.+.++...+.+-++++...+
T Consensus 50 ~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~ 95 (174)
T PRK07352 50 ERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAK 95 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777888888888788888888888888887777777664
No 186
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=59.91 E-value=40 Score=33.50 Aligned_cols=49 Identities=8% Similarity=0.073 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ-GQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~-~~a~LEaEn~~LRaqL~elr~rl 155 (268)
..++.+|+.|++.|....+++.+|+. ++.++|.-+++|.++...|.+.+
T Consensus 412 ~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 412 NKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666666666666665 46777877788777777666654
No 187
>PRK14127 cell division protein GpsB; Provisional
Probab=59.40 E-value=29 Score=28.86 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024384 135 AALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl~ 156 (268)
..|+.|+.+|+.+|.++..++.
T Consensus 47 ~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 47 EELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3456666677777777766655
No 188
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=59.22 E-value=52 Score=27.66 Aligned_cols=28 Identities=29% Similarity=0.240 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 024384 103 REKKKARTASLEDE--VVRLRAVNQQLLKR 130 (268)
Q Consensus 103 R~RKQahleeLE~Q--V~qLraeN~qL~~r 130 (268)
++++|++++.|+.. +..+.....+|...
T Consensus 76 lE~~~~~i~~~~~~~e~~~~a~~~~~l~~~ 105 (139)
T PF13935_consen 76 LERAQQRIAELEQECENEDIALDVQKLRVE 105 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544 33333333333333
No 189
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=59.21 E-value=23 Score=31.63 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL 148 (268)
|.-+.+++++|+.|+++|+++-.. .++++....|-.|+.+|+.+|
T Consensus 177 ~~~~~~~i~~L~kei~~L~~~~~k-Ekq~nrkveln~elk~l~~eL 221 (221)
T PF14335_consen 177 RIERLEQIEKLEKEIAKLKKKIKK-EKQFNRKVELNTELKKLKKEL 221 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcC
Confidence 344456677777777777665431 122334456667777766653
No 190
>PHA02675 ORF104 fusion protein; Provisional
Probab=59.14 E-value=61 Score=26.52 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccc
Q 024384 135 AALEAEVARLKCLLVDIRGRIEGEIGS 161 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl~~~igs 161 (268)
..||.....||.-+..|..+|+-..|-
T Consensus 61 ~RLE~H~ETLRk~Ml~L~KKIDVQTG~ 87 (90)
T PHA02675 61 DRLERHLETLREALLKLNTKIDVQTGY 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhhcceeccc
Confidence 457888999999999999999977664
No 191
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=59.04 E-value=1.1e+02 Score=26.06 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL 131 (268)
.++|+.|..++.+..+..+++.+.+
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEV 91 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544
No 192
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=58.75 E-value=10 Score=37.88 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 100 RKYREKKKARTASLEDEVVRLRAVN 124 (268)
Q Consensus 100 RRSR~RKQahleeLE~QV~qLraeN 124 (268)
--.|+=|++++++||+|+.+|++|.
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3467789999999999999999885
No 193
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=58.73 E-value=80 Score=24.20 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVD 150 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~e 150 (268)
|-+.|+.|.++-..|......+...|. ....+|.++..|+..+..
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777666666555444333332 133444444444444443
No 194
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=58.70 E-value=31 Score=30.86 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIG 160 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~ig 160 (268)
+++..++..|+.+++.|...|--...++..+..+-..|.+|+..|..-||
T Consensus 114 ~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~Iig 163 (163)
T PF03233_consen 114 EEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKKIIG 163 (163)
T ss_pred HHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33344667777777777777766778888898898889999888876665
No 195
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=58.56 E-value=52 Score=26.79 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~r 130 (268)
+..|++++..+..++++|...
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~ 102 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQK 102 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 196
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=58.51 E-value=88 Score=26.17 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=28.3
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
|+.+..++.+.|.+.|..=.+-..+-+..+..-|.+-+.+.....
T Consensus 39 R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~ 83 (141)
T PRK08476 39 RNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAI 83 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777666666666666666666666666655553
No 197
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=58.24 E-value=91 Score=24.62 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRL--------QGQAALEAEVARLKCLLVDIRGRIEGEIG 160 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL--------~~~a~LEaEn~~LRaqL~elr~rl~~~ig 160 (268)
..++.+.+|++++.+|..+.+++...+ +.|..+-.|+..+|----.|.++|....|
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l~~~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA~~rg 67 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAELIEDPEKIVKRHIKLLHEYNEIKDIGQGLIGLIADQRG 67 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 345667777777777777777766653 23555666666666555555666554444
No 198
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=58.02 E-value=27 Score=32.31 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhhh
Q 024384 140 EVARLKCLLVDIRGRIE 156 (268)
Q Consensus 140 En~~LRaqL~elr~rl~ 156 (268)
|..||.++-..++.+|+
T Consensus 194 EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 194 EYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444555554
No 199
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=58.01 E-value=89 Score=27.46 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=32.1
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~r 130 (268)
+|+.+..++-++|.+.+..=.+-.++.++++..-+.+-+++...
T Consensus 41 ~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 41 NRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888877777777777777777777777777554
No 200
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=57.94 E-value=56 Score=29.25 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
...++..++.+||.++-+|+.+.+.+.... ....+|+++|+.....|...+.
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~k---e~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKK---EAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666665555443 3445666666666665555443
No 201
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.82 E-value=58 Score=28.55 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~ 132 (268)
.+|..+|.+|+++|.+|..++.
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3466667777777777776554
No 202
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.73 E-value=92 Score=26.00 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=11.9
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHH
Q 024384 89 KKRPLGNREAVRKYREKKKARTASL 113 (268)
Q Consensus 89 ~KRmlSNRESARRSR~RKQahleeL 113 (268)
+.+.+..-+.+.+.-.+|++.++.|
T Consensus 112 R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 112 RADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555444444
No 203
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=57.68 E-value=46 Score=30.48 Aligned_cols=16 Identities=44% Similarity=0.466 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 134 QAALEAEVARLKCLLV 149 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~ 149 (268)
+.+|+.|+.-||..+.
T Consensus 62 aK~l~eEledLk~~~~ 77 (193)
T PF14662_consen 62 AKALEEELEDLKTLAK 77 (193)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445554444433
No 204
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.65 E-value=52 Score=34.98 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL 131 (268)
.+..|+.+|+.|+.+|+.|...|
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ 445 (652)
T COG2433 423 RIKKLEETVERLEEENSELKREL 445 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554
No 205
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=57.49 E-value=63 Score=27.92 Aligned_cols=49 Identities=29% Similarity=0.376 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~------------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+=++.|++|+++|+.+..++.++++. |.+-..+.+.|...+.+|..+|.
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888999998888888777741 44444555666666677777766
No 206
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=57.37 E-value=34 Score=32.16 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 96 REAVRKYREKKKARTASLEDEVVRL 120 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV~qL 120 (268)
+.+++..+.-=++++++++.++...
T Consensus 165 ~~~~~~a~~fl~~ql~~~~~~l~~a 189 (362)
T TIGR01010 165 ERARKDTIAFAENEVKEAEQRLNAT 189 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444333
No 207
>PF15556 Zwint: ZW10 interactor
Probab=57.22 E-value=72 Score=30.11 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=32.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 92 mlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
|-..|.|...-....++||..|.+-.+.+|..-..-..+| ..|..|+..|+.+...-+.++..
T Consensus 118 ~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeL---e~l~qeL~~lkqQa~qeqdKLQR 180 (252)
T PF15556_consen 118 MEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQEL---ERLYQELGTLKQQAGQEQDKLQR 180 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544444444444555555554444443333222222 34556777777777776666653
No 208
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=57.10 E-value=44 Score=32.45 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQG-------QAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~-------~a~LEaEn~~LRaqL~elr~r 154 (268)
.+.++.|++++.+|..+..+|..+|.. ...++.+++.+..++.++...
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776532 233444444444444444443
No 209
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=56.89 E-value=97 Score=24.54 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=47.1
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024384 91 RPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 91 RmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~el 151 (268)
++-..++.++..=..|+..+..||+.+.+|.++...-.++.- .-..|..|+..|+.++..-
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks 71 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKS 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 344566777788888999999999999999998877666642 3457888888888877653
No 210
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.72 E-value=49 Score=30.53 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL 131 (268)
.+|++++.+...|..|....++.|
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeL 55 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554444
No 211
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=56.57 E-value=57 Score=29.03 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+.+|..|+.+|+.++..+++.|.
T Consensus 97 N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 97 NEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544443
No 212
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=56.44 E-value=19 Score=34.73 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ----GQA-ALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~----~~a-~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+|.++|.+|..|..-|..|..+|. -|. .||.| .++|+.|..+..||.
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke-~q~raeL~acEEkl~ 269 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKE-NQARAELNACEEKLK 269 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhH-HHHHHHHHHHHHHHh
Confidence 4677999999999999999999995 243 34444 456666666555554
No 213
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=56.07 E-value=42 Score=28.85 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024384 135 AALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl 155 (268)
..+++|++.++.++..-+.++
T Consensus 76 ~kl~~el~~~~~~~~~~~~~~ 96 (161)
T PF04420_consen 76 DKLEEELEKLNKSLSSEKSSF 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554433333
No 214
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=56.07 E-value=59 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 116 EVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 116 QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el 151 (268)
+|.+|..+-++|-.++ ..|..++..||..+...
T Consensus 4 kid~Ls~dVq~L~~kv---dqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKV---DQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4555555555555543 34555555555554443
No 215
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=55.79 E-value=17 Score=30.89 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
.++-.|-.|+..|++.-..|++. +.+|.-||..||..|.+
T Consensus 15 ~~l~~l~~el~~lK~~l~~lvEE---N~~L~lENe~LR~RL~~ 54 (114)
T COG4467 15 EQLGVLLAELGGLKQHLGSLVEE---NTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hHHHHhhHHHHHHHhCC
Confidence 44555555555555555444443 56667777777776666
No 216
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=55.25 E-value=25 Score=37.09 Aligned_cols=64 Identities=25% Similarity=0.286 Sum_probs=40.6
Q ss_pred cchHHHhhccCcccHHHHHHHHHHHH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 82 ESTEKKTKKRPLGNREAVRKYREKKK-ART--------ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (268)
Q Consensus 82 e~~d~KK~KRmlSNRESARRSR~RKQ-ahl--------eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LR 145 (268)
.-+++|++|=+--|-+|--|-|..|+ +++ +.++.=++.||..-..|+++++....|..|.+.-+
T Consensus 346 ~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~ 418 (645)
T KOG0681|consen 346 QLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKDRK 418 (645)
T ss_pred HHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34566666666666666556665554 221 22556678888888888888877666777665433
No 217
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.18 E-value=1.3e+02 Score=25.53 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLL 128 (268)
Q Consensus 95 NRESARRSR~RKQahleeLE~QV~qLraeN~qL~ 128 (268)
.....+.-++.++++++.++..++.+..+-..|.
T Consensus 117 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 117 DLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555666666666666666555555
No 218
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=55.11 E-value=43 Score=32.24 Aligned_cols=41 Identities=27% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
+.+|+.++.+|+..+..|...+ ..++.++..|+.++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAEN---EKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhC
Confidence 3345556666666666665554 4566777777777766554
No 219
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=54.97 E-value=1.1e+02 Score=28.31 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 024384 137 LEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 137 LEaEn~~LRaqL~elr~rl~ 156 (268)
+++++..++.++..++..++
T Consensus 251 ~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 251 AQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 220
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=54.73 E-value=81 Score=32.37 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
++.++.||.++++|+++..+|...|.
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44677899999988888888888774
No 221
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.61 E-value=68 Score=34.22 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
++.+++-|+.=++..++|+.+.++|+++...+++++
T Consensus 531 ~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a 566 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKELEQEMEELKERERNKKLEL 566 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555544444443
No 222
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=54.54 E-value=60 Score=31.65 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 94 GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 94 SNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~ 133 (268)
=|-|+-|.+ -+-.-..|.+||..|+.+|..+..+|..
T Consensus 67 y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~ 103 (389)
T PF06216_consen 67 YNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIRE 103 (389)
T ss_pred HHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554432 3455667778888888888777777754
No 223
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=54.40 E-value=46 Score=30.94 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.=+..|=.++|..|.+|.+++.. ...|..|++.||+.-..|=+||.
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555542 34566666666666666655544
No 224
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=54.25 E-value=69 Score=35.56 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSF 162 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~igsf 162 (268)
+.|+.-....++.+..++.+..+++.+.++...+| ..++.++..|++++.+|..+|...-|+|
T Consensus 479 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l---~~~~~~~~~~~~~~~~l~~~L~p~~gSL 541 (1201)
T PF12128_consen 479 EQAQEQQNQAQQAVEELQAEEQELRKERDQAEEEL---RQARRELEELRAQIAELQRQLDPQKGSL 541 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhCCCCCcH
Confidence 44555555556666677777777777766666655 4467778888888888888888666654
No 225
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=54.23 E-value=62 Score=33.02 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQG----------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~~----------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
++++.++.||+++++|.++...|...+.. ...+-.|...++.++.++..++.
T Consensus 565 ~~~~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 626 (635)
T PRK11147 565 KLQRELEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWE 626 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334999999999999999888888852 12333445555555555555544
No 226
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=53.98 E-value=58 Score=30.78 Aligned_cols=7 Identities=29% Similarity=0.776 Sum_probs=2.7
Q ss_pred ChhhHHH
Q 024384 25 SMDSFFE 31 (268)
Q Consensus 25 s~d~~~d 31 (268)
|+..||+
T Consensus 15 sL~~FL~ 21 (325)
T PF08317_consen 15 SLQDFLN 21 (325)
T ss_pred CHHHHHH
Confidence 3333443
No 227
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=53.86 E-value=1.4e+02 Score=25.70 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=34.7
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+....-+.|...|..=++.+++.+.++...+.+-++++....
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~ 94 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAK 94 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777778888888888888888888888888777777664
No 228
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=53.83 E-value=1.4e+02 Score=25.61 Aligned_cols=46 Identities=7% Similarity=0.105 Sum_probs=34.5
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+....-+.|.+.|..=++.+++-+.++...+.+-++++....
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~ 94 (175)
T PRK14472 49 EREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGK 94 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777788888888888888888888888887777776654
No 229
>PF14282 FlxA: FlxA-like protein
Probab=53.79 E-value=37 Score=27.46 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
...|.+++..|.++|..+.....
T Consensus 53 ~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777766655443
No 230
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=53.65 E-value=73 Score=31.08 Aligned_cols=51 Identities=25% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhh
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRL--------QGQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL--------~~~a~LEaEn~~LRaqL~elr~rl 155 (268)
+...|+..|..+|.+|+.+-......- +.-..+..||.+|+..|..-..|.
T Consensus 226 ~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~err 284 (310)
T PF09755_consen 226 RLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERR 284 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776544333222 123456677777777766544443
No 231
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=53.23 E-value=45 Score=32.43 Aligned_cols=58 Identities=19% Similarity=0.404 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHhhhh
Q 024384 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR---LQGQAAL---EAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV~qLraeN~qL~~r---L~~~a~L---EaEn~~LRaqL~elr~rl~ 156 (268)
+|+.+|-.. +...|++|..|+.++|..+ +.++ +..+.+| ..|+.+||+-+..++..|-
T Consensus 78 kes~~~l~d-RetEI~eLksQL~RMrEDW--IEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 78 KESENRLHD-RETEIDELKSQLARMREDW--IEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 566666665 4567888888888887765 2222 2112222 2466667666666665544
No 232
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=53.13 E-value=78 Score=25.69 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
.|=++.+++|+.++..|..+|.+|..+|
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777666665
No 233
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=53.01 E-value=1.1e+02 Score=27.30 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=38.8
Q ss_pred ccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q 024384 94 GNRE--AVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL-LVDIRG 153 (268)
Q Consensus 94 SNRE--SARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaq-L~elr~ 153 (268)
-||| +++.+.+||.+.+.+--+.+.....+-.+|..+|. .|-.|-.+||.+ |.+|..
T Consensus 96 vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~---eLv~eSE~~rmKKLEELsk 155 (159)
T PF04949_consen 96 VNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLM---ELVSESERLRMKKLEELSK 155 (159)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 3555 67778888888888777788888888888888873 356666666643 333433
No 234
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=52.74 E-value=66 Score=31.51 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
.+|+.++.+|+.++..|..++ ..++.|+..|+.++..++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 25 KELEKELEFLDIQEEYIKEEQ---KNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhC
Confidence 334555555555555555443 2344555666666665543
No 235
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=52.65 E-value=35 Score=34.10 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVN 124 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN 124 (268)
.|=|+..++|..+|++|+++.
T Consensus 42 ~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 42 HSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344556777777777774443
No 236
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=52.62 E-value=47 Score=37.27 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.+..++++|+..+..|+.+|..|+++|+
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~ 554 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQ 554 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4567899999999999999999999997
No 237
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=52.42 E-value=93 Score=28.77 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~r 154 (268)
..||..+++++.+...+.+.+ ..+..|+..|+.++.++|.-
T Consensus 63 n~lE~iIkqa~~er~~~~~~i---~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 63 NTLENIIKQAESERNKRQEKI---QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777766665 34456777787777777654
No 238
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=52.38 E-value=39 Score=32.22 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=11.8
Q ss_pred HhhccCcccHHHHH-HHHHHHH
Q 024384 87 KTKKRPLGNREAVR-KYREKKK 107 (268)
Q Consensus 87 KK~KRmlSNRESAR-RSR~RKQ 107 (268)
|-.=|-++|||..- .+|.||+
T Consensus 127 R~~LK~IR~~E~sl~p~R~~r~ 148 (271)
T PF13805_consen 127 RIHLKSIRNREESLQPSRDRRR 148 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhH
Confidence 44456677888654 3444443
No 239
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=52.20 E-value=30 Score=25.75 Aligned_cols=35 Identities=31% Similarity=0.326 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 119 RLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 119 qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
-|+.=|.-|..| ++|..|+..|+.|-.+|+..|.+
T Consensus 24 ~l~rY~~vL~~R----~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 24 FLKRYNKVLLDR----AALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555 44555555555555555554443
No 240
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=52.11 E-value=1e+02 Score=30.09 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 97 EAVRKYREKKKARTASLED-------EVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~-------QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
|++.|-..-.|.++.++|. +|.+.-+.-..|..|| ..|..||..||.||.+...+.+
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL---~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERL---SQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554555555555543 3444444455555554 6788999999999999877665
No 241
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=51.94 E-value=46 Score=27.20 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
...++..+..|+.++.+.+..|+.
T Consensus 46 ~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 46 RAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp HHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777788777777666653
No 242
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=51.93 E-value=1e+02 Score=23.22 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGEIG 160 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~~~ig 160 (268)
+++++..+..|........+.... ...||.....||.-+..|..+|+-..|
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiDvQTG 57 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKIDVQTG 57 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 567777777777777777776652 456888899999999999888875443
No 243
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=51.89 E-value=36 Score=34.77 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
+.+|..++.+|.+.|..|...|+ ....++..||++|..|..
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLK---AARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
Confidence 46788888888888888887774 345677777777766644
No 244
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.86 E-value=62 Score=30.86 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 024384 137 LEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 137 LEaEn~~LRaqL~elr~rl~ 156 (268)
+++|...|..++.++..+|.
T Consensus 78 ~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 78 SKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 245
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=51.42 E-value=1.5e+02 Score=24.99 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=31.7
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+..++-+.|.+.|..=++-.++.+.++...+.+-+.++...+
T Consensus 39 ~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14471 39 EREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAR 84 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667777777777777777777777777777666665543
No 246
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=51.38 E-value=98 Score=23.20 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~r 130 (268)
++++||.++..|......+.+.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~e 22 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKE 22 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999988886555444
No 247
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.37 E-value=1e+02 Score=32.57 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.+++-|+|.+.|+++|..|.+.|.
T Consensus 302 Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 302 EIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666667777766664
No 248
>PRK04863 mukB cell division protein MukB; Provisional
Probab=51.36 E-value=78 Score=36.53 Aligned_cols=20 Identities=5% Similarity=-0.087 Sum_probs=13.1
Q ss_pred hhccCcccHHHHHHHHHHHH
Q 024384 88 TKKRPLGNREAVRKYREKKK 107 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQ 107 (268)
+.++....++.|++++.-++
T Consensus 322 rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 322 AESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556667788888776543
No 249
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=51.22 E-value=89 Score=28.09 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
...+|++++++|..+.+.|.. +......||.+...|...|+
T Consensus 121 ~~~eL~~eI~~L~~~i~~le~-------~~~~~k~LrnKa~~L~~eL~ 161 (171)
T PF04799_consen 121 TKNELEDEIKQLEKEIQRLEE-------IQSKSKTLRNKANWLESELE 161 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555543 44455555555555555444
No 250
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=50.95 E-value=90 Score=29.52 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKKKARTA----SLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 97 ESARRSR~RKQahle----eLE~QV~qLraeN~qL~~rL~ 132 (268)
||+-.+=|||.-+++ .++.+++.|+.++..|..++.
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia 209 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIA 209 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 567777788865543 345555555555555555543
No 251
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=50.90 E-value=61 Score=25.52 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
++|..+..+|+.+.+.|...++.......|+..++..+..+.....
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~ 47 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEE 47 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3455555556655555555555444555666666666666654433
No 252
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.75 E-value=84 Score=26.25 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 99 VRKYREKKKARTASLEDEVVRLRAVNQ 125 (268)
Q Consensus 99 ARRSR~RKQahleeLE~QV~qLraeN~ 125 (268)
+-..|.++...++.++..+...+++-.
T Consensus 108 ~l~~R~~~~~~~~~~~~~l~~k~~~~~ 134 (218)
T cd07596 108 TLDDRADALLTLQSLKKDLASKKAQLE 134 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544433
No 253
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=50.71 E-value=73 Score=26.16 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl 155 (268)
+|..|+.=.+.|-.-|.++| +.|+.+|.+|+.+|..++...
T Consensus 5 eLR~qLqFvEEEa~LlRRkl---~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKL---SELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444444 567888888888888877653
No 254
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=50.70 E-value=70 Score=31.25 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 024384 138 EAEVARLKCLLVDIRG 153 (268)
Q Consensus 138 EaEn~~LRaqL~elr~ 153 (268)
+.++..|+.++.+++.
T Consensus 242 ~~~i~~l~~~i~~~~~ 257 (457)
T TIGR01000 242 QQQIDQLQKSIASYQV 257 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 255
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=50.63 E-value=72 Score=35.80 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKKKARTASLEDEV 117 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV 117 (268)
.+.++.+.+..+.++++++++
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555554
No 256
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=50.59 E-value=50 Score=35.23 Aligned_cols=53 Identities=11% Similarity=0.298 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
|=|--+|.|=.+|+++..+|+++|+++....+.+++....|..--.+||....
T Consensus 360 ~~aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~ 412 (669)
T PF08549_consen 360 GKAEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVE 412 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC
Confidence 45777899999999999999999999999999999876666555556665544
No 257
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=50.57 E-value=40 Score=28.82 Aligned_cols=43 Identities=23% Similarity=0.165 Sum_probs=30.4
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 84 TEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 84 ~d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~r 130 (268)
.|.-|.-=|--=||-+ +-=+.++.+|++.+.+|+.||.-|+.-
T Consensus 54 MDLVKtHLmfAVREEV----e~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 54 MDLVKTHLMFAVREEV----EVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666666665555544 445567899999999999999766443
No 258
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.55 E-value=53 Score=33.70 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+++|+.++..+..+-+.+..++ ..++++...+..++.+++.++.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i---~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEI---AHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333332 3344444444444444444333
No 259
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=50.49 E-value=92 Score=23.81 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~ 132 (268)
.||.+|..|+..+.++..++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~ 22 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNS 22 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888877775
No 260
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=50.41 E-value=28 Score=29.25 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLL 128 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~ 128 (268)
++.+++|+.++..|+.+.+.+.
T Consensus 111 ~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 111 QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3566667777777766665543
No 261
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=50.09 E-value=80 Score=22.30 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCLLVDI 151 (268)
Q Consensus 136 ~LEaEn~~LRaqL~el 151 (268)
.|+.+|..|+.++..|
T Consensus 36 ~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 36 ELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555544
No 262
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=50.07 E-value=76 Score=31.33 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024384 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRL-------QGQAALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (268)
Q Consensus 100 RRSR~RKQahleeLE~QV~qLraeN~qL~~rL-------~~~a~LEaEn~~LRaqL~elr~rl~~~igsfp 163 (268)
...|+.-+..+++|..+.+++.++...+.+.- .+...|..++..|..++.++..++...+-.+|
T Consensus 34 d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iP 104 (425)
T PRK05431 34 DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIP 104 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344445556666666655555554422111 01233444555555555555666655444444
No 263
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=49.98 E-value=5.4 Score=41.30 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 101 KYREKKKARTASLEDEVVRLRAVNQQLLKRLQ-------GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 101 RSR~RKQahleeLE~QV~qLraeN~qL~~rL~-------~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+|| +|-.-+++|..+|+.|+..|..|+++.. ....+..++..++.++.++..++.
T Consensus 319 ~YK-kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~ 380 (713)
T PF05622_consen 319 KYK-KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLS 380 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4667788888888888888887776642 233444555555555555544444
No 264
>PF14282 FlxA: FlxA-like protein
Probab=49.94 E-value=57 Score=26.37 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024384 134 QAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~ 153 (268)
-..|++++++|..+..+-..
T Consensus 60 I~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 60 IQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777666665543
No 265
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=49.88 E-value=1.6e+02 Score=25.10 Aligned_cols=46 Identities=7% Similarity=0.064 Sum_probs=35.3
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+..++=+.|...|..-++.+++.+.++...+.+-++++....
T Consensus 47 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~ 92 (173)
T PRK13460 47 ERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAK 92 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777788888888888888888888888888777777664
No 266
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=49.71 E-value=1.5e+02 Score=24.73 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=37.8
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+..++-+.|.+.|..=++.+++.+.++...+.+-++++....
T Consensus 33 ~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~ 78 (159)
T PRK09173 33 ARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAE 78 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888889999888888889999998888888888777664
No 267
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=49.57 E-value=87 Score=30.29 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 100 RRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
..-|.+..+.+++|+.+.+.|.++|....+.|+
T Consensus 100 L~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~ 132 (355)
T PF09766_consen 100 LEQRKRLEEQLKELEQRKKKLQQENKKKKKFLD 132 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777777777777777777666664
No 268
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.16 E-value=1.2e+02 Score=25.07 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV~qLraeN~qL~~r 130 (268)
++|..+|-+-=..|.+. ..++..||.+.+.+...
T Consensus 41 ~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~ 74 (132)
T PF07926_consen 41 QEAQQKYERELVKHAED-IKELQQLREELQELQQE 74 (132)
T ss_pred HHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHH
Confidence 34444444444444333 33334444444333333
No 269
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=49.12 E-value=70 Score=31.10 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHH--Hhhhhhhcc
Q 024384 136 ALEAEVARLKCLLVDI--RGRIEGEIG 160 (268)
Q Consensus 136 ~LEaEn~~LRaqL~el--r~rl~~~ig 160 (268)
.-|.+++.||+++... ..+++.++|
T Consensus 240 MsE~Ql~ELRadIK~fvs~rk~de~lg 266 (302)
T PF07139_consen 240 MSEEQLAELRADIKHFVSERKYDEELG 266 (302)
T ss_pred cCHHHHHHHHHHHHHHhhhhhhHHHHh
Confidence 3467788888888774 335666776
No 270
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.05 E-value=30 Score=24.81 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQL 127 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL 127 (268)
.|-+.++..++.++++|++++++|
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666667777776666554
No 271
>PRK06798 fliD flagellar capping protein; Validated
Probab=48.84 E-value=79 Score=31.48 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQ-GQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~-~~a~LEaEn~~LRaqL~elr~ 153 (268)
+.|+.++++|.....+..+++. .+.+||.-+++|.+|..-|..
T Consensus 389 ~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~ 432 (440)
T PRK06798 389 SKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAALDSQLKTIKA 432 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433333333433 356677777777766655443
No 272
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=48.59 E-value=66 Score=28.75 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 98 AVRKYREKKKARTASLEDEVVRLRAV 123 (268)
Q Consensus 98 SARRSR~RKQahleeLE~QV~qLrae 123 (268)
++-++|..||...+.+++.+...+++
T Consensus 112 ~vlk~r~~~q~~~e~~~~~L~~k~~~ 137 (201)
T cd07622 112 AVCKKHELLQYDLEKAEDALANKKQQ 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668888888888888777777666
No 273
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=48.54 E-value=46 Score=31.31 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
++|+.++++|+.+..+|..++. .++.|+..||.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 2 SELDVRIRKLEDEKRSLEKEKI---RLERELERLRSEIERLR 40 (364)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 3455556666666655555542 45666777777766543
No 274
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=48.49 E-value=13 Score=33.80 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=44.5
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 024384 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL-QGQAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 89 ~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL-~~~a~LEaEn~~LRaqL~elr~r 154 (268)
.+..|..=...|++.+.|-+++..|+..++-++.....+...| .....|++|+.+.|.+++.+.+|
T Consensus 147 l~~~L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~~IQ~NLvtr~g~l~~El~rmR~LlarV~~r 213 (213)
T PF13093_consen 147 LRERLIELSEQRQYLQQRLEYLRRLRSLLEPFDSPQENIQPNLVTRDGELEAELERMRMLLARVAGR 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccccCCCCchHHHHHHHHHHHHHHHccC
Confidence 3455555566677777777777777777766665555332222 13567999999999999887664
No 275
>PRK14160 heat shock protein GrpE; Provisional
Probab=48.26 E-value=70 Score=29.38 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 024384 113 LEDEVVRLRAVNQ 125 (268)
Q Consensus 113 LE~QV~qLraeN~ 125 (268)
|++++..|+.+..
T Consensus 66 l~~~l~~l~~e~~ 78 (211)
T PRK14160 66 LKEENKKLENELE 78 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 276
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=48.24 E-value=41 Score=35.90 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 135 AALEAEVARLKCLLVD 150 (268)
Q Consensus 135 a~LEaEn~~LRaqL~e 150 (268)
..||.|+.++|+++.+
T Consensus 360 ~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 360 RELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666666554
No 277
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=48.15 E-value=58 Score=35.40 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
..+.++.|+.|+++|+.+.+.+.++|+
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~ 953 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKIS 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566666777777777777777775
No 278
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=48.12 E-value=38 Score=26.84 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 118 VRLRAVNQQLLKRLQGQAALEAEVARLKC 146 (268)
Q Consensus 118 ~qLraeN~qL~~rL~~~a~LEaEn~~LRa 146 (268)
..|..+|.+|.++|+ .||+|...++.
T Consensus 3 ~ei~eEn~~Lk~eiq---kle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQ---KLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 457777877777773 45677666655
No 279
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=48.08 E-value=1.6e+02 Score=27.67 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhhh
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQA-------------ALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~~a-------------~LEaEn~~LRaqL~elr~rl~ 156 (268)
....++.|++|+.+++.+-.....+|+.+. .....+..|+.++.+++.++.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~ 231 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLA 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888877776311 122334555666666555554
No 280
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=47.98 E-value=73 Score=31.36 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~r 130 (268)
+++-+.+|.++.+|+.+|.-|++.
T Consensus 32 ~~~~~~~e~~~~~l~~~~~~~~~~ 55 (328)
T PF15369_consen 32 KAEQESFEKKIRQLEEQNELIIKE 55 (328)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344455556666666666555544
No 281
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=47.97 E-value=1.2e+02 Score=24.15 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL 131 (268)
++.+..|...-.+|-.+-.+...++
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~ 62 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARA 62 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 3334444444444444444444443
No 282
>PF15294 Leu_zip: Leucine zipper
Probab=47.89 E-value=61 Score=31.10 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 024384 113 LEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 113 LE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~ 153 (268)
|..++.+|++||..|..||.. ....-.|...|.++|.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999863 22233455666666666665
No 283
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.84 E-value=1e+02 Score=29.41 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
++++..++..++.++.++...| ..|+.++..|+..+.+
T Consensus 61 i~~~~~k~~~~~~~i~~~~~ei---k~l~~eI~~~~~~I~~ 98 (265)
T COG3883 61 IEEIQSKIDELQKEIDQSKAEI---KKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3333333333333333333333 3455555555554444
No 284
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=47.75 E-value=23 Score=28.34 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQ 134 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~ 134 (268)
+=+|-+|+.+|++++..|.++|..+
T Consensus 73 vl~LLd~i~~Lr~el~~L~~~l~~~ 97 (101)
T PRK10265 73 ALTLLDEIAHLKQENRLLRQRLSRF 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888777543
No 285
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.71 E-value=51 Score=36.28 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=44.3
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 024384 91 RPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVD 150 (268)
Q Consensus 91 RmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~e 150 (268)
...++-..-.--+.+-...++.|..+++.|+.+|.+|..+++. +..++.++..||.+|.-
T Consensus 654 ~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~ 717 (970)
T KOG0946|consen 654 ELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGI 717 (970)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444455556777788888888999999999999888873 56777777778777763
No 286
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=47.67 E-value=1.3e+02 Score=25.10 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 101 KYREKKKARTASLEDEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 101 RSR~RKQahleeLE~QV~qLraeN~qL~~rL~~ 133 (268)
|...++.++...|+.|+++.+.+..+....|.+
T Consensus 18 r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 18 RLTSSNQQKQAKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444566777777777777777666654
No 287
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=47.47 E-value=1.1e+02 Score=29.65 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=10.6
Q ss_pred cceeccccccCCCCC
Q 024384 58 TCFHVHTKIVAPTSE 72 (268)
Q Consensus 58 tc~h~ht~~~~s~s~ 72 (268)
-|.|+++-.|+--+.
T Consensus 279 NCrH~~~p~~~Gi~~ 293 (361)
T PF06152_consen 279 NCRHSLYPFIPGIST 293 (361)
T ss_pred CCCCcccCCCCCCCC
Confidence 488888887775433
No 288
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=47.46 E-value=82 Score=28.78 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=35.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH--------HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024384 100 RKYREKKK-ARTASLEDEVVRLRAV--------NQQLLKRLQG-QAALEAEVARLKCLLVDI 151 (268)
Q Consensus 100 RRSR~RKQ-ahleeLE~QV~qLrae--------N~qL~~rL~~-~a~LEaEn~~LRaqL~el 151 (268)
.|-|+.|- +..+++|.++..|... .+.|..+++. ..+||.|.+..|.+|++.
T Consensus 39 hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~ 100 (193)
T PF12925_consen 39 HRERMTKVMKEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVET 100 (193)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444332 4567777777666544 3555556554 789999999999999874
No 289
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=47.43 E-value=1.6e+02 Score=27.82 Aligned_cols=11 Identities=36% Similarity=0.446 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 024384 141 VARLKCLLVDI 151 (268)
Q Consensus 141 n~~LRaqL~el 151 (268)
+.+||+.+..|
T Consensus 278 v~~Lk~~~~~L 288 (325)
T PF08317_consen 278 VKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHH
Confidence 34444443333
No 290
>PHA02562 46 endonuclease subunit; Provisional
Probab=47.37 E-value=89 Score=30.61 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=26.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 92 mlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
++.-.+...+-+...++.+++|+.++..++.....+..++ ..|++++..|.....
T Consensus 321 ~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~---~~l~~ei~~l~~~~~ 375 (562)
T PHA02562 321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKA---KKVKAAIEELQAEFV 375 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhh
Confidence 3333334444444445555566555555555544444443 445555555544333
No 291
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.24 E-value=1.1e+02 Score=26.54 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 119 RLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 119 qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el 151 (268)
.+..|.++|.++| ...+.|+..||.|...+
T Consensus 158 ~~~~ei~~lk~el---~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 158 KLSEEIEKLKKEL---EKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3334444444443 22455566666665544
No 292
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=47.04 E-value=99 Score=27.80 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCLLV 149 (268)
Q Consensus 136 ~LEaEn~~LRaqL~ 149 (268)
.|+.|+++|..++.
T Consensus 124 eL~~eI~~L~~~i~ 137 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQ 137 (171)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544443
No 293
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=46.90 E-value=1.1e+02 Score=22.67 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 024384 136 ALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~rl 155 (268)
.++.+...|+..|.++...+
T Consensus 62 ~m~~~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 62 SMENDLSELRNLLSELQQSI 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544
No 294
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=46.83 E-value=62 Score=31.52 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~ 132 (268)
++-..+...|+.||+.|.....
T Consensus 56 e~ek~e~s~LkREnq~l~e~c~ 77 (307)
T PF10481_consen 56 EEEKNEYSALKRENQSLMESCE 77 (307)
T ss_pred HHHhhhhhhhhhhhhhHHHHHH
Confidence 3334455677778887776654
No 295
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.68 E-value=78 Score=32.63 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 024384 137 LEAEVARLKC 146 (268)
Q Consensus 137 LEaEn~~LRa 146 (268)
|+.||.+||.
T Consensus 309 leeentelRs 318 (502)
T KOG0982|consen 309 LEEENTELRS 318 (502)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 296
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=46.63 E-value=1.9e+02 Score=24.94 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=31.2
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+...+=+.|.+.|..=++.+.+.+.++...+.+-++++....
T Consensus 55 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~ 100 (184)
T CHL00019 55 NRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGY 100 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666677777777777777777777777777777766654
No 297
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=46.59 E-value=21 Score=36.59 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
++++|++|+.|+++|+++...|.+++.
T Consensus 29 ~~qkie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 29 LLQKIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccc
Confidence 444788888888888888776666653
No 298
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=46.54 E-value=98 Score=29.55 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+|+.++++++.+-..+-.....+..|+.|+...+.....+..|++
T Consensus 321 ~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 321 AELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444566777777777777777766665
No 299
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=46.52 E-value=1.3e+02 Score=27.22 Aligned_cols=52 Identities=25% Similarity=0.247 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQG-----------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~~-----------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
=||.-++.||.+|...+..-++....|+. ....+.++..|+..|...+..+.
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~ 126 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLA 126 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999988888887777752 22344566677766666555443
No 300
>PHA00728 hypothetical protein
Probab=46.52 E-value=26 Score=30.58 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024384 115 DEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 115 ~QV~qLraeN~qL~~rL~~ 133 (268)
.+|+||+.+|.+|.++|+.
T Consensus 5 teveql~keneelkkkla~ 23 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAE 23 (151)
T ss_pred hHHHHHHHhHHHHHHHHHH
Confidence 5788999999999999854
No 301
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.50 E-value=1.4e+02 Score=23.31 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKR------L-QGQAALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~r------L-~~~a~LEaEn~~LRaqL~elr~rl~~~igsfp 163 (268)
+.-+..+++|..+.+.+..+..++... | .....+..++..|..++.++...+...+-.+|
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334445555555555555554444431 1 12456777777777777777777776655444
No 302
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=46.49 E-value=67 Score=30.93 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+..|+.++..|+.++++|..++ ..|+.+...++.++..++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 46 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKL---RDLEAENEKLERELERLKSELE 46 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776665 4456666677777777666665
No 303
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=46.38 E-value=36 Score=34.29 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL 148 (268)
+++++++-|++.+.++|...|++|..+++ .|+.+..+++.++
T Consensus 286 qq~~q~~~E~~~rqk~le~~n~~L~~rie---eLk~~~~~~~~~~ 327 (411)
T KOG1318|consen 286 QQTLQRARELENRQKKLESTNQELALRIE---ELKSEAGRHGLQV 327 (411)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHHHH---HHHHHHHHhcCcc
Confidence 45566788999999999999999999974 4666665555443
No 304
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=46.34 E-value=1.2e+02 Score=24.59 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.+++|..+|..|..+-.+|...++
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~ 48 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMK 48 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888877777766654
No 305
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=46.34 E-value=92 Score=30.69 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-------HHHHHHHhhhhhhccccc
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLK-------CLLVDIRGRIEGEIGSFP 163 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~rL~~-~a~LEaEn~~LR-------aqL~elr~rl~~~igsfp 163 (268)
|+.-+..+++|..+-+++.++..++.+.-.. ...|.++...|+ .++.++...+...+-.+|
T Consensus 39 ~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lP 107 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIP 107 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333444555555555554444443211111 223444444444 444445555554444444
No 306
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=46.33 E-value=1.8e+02 Score=28.18 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=43.1
Q ss_pred hccCcccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhh
Q 024384 89 KKRPLGNREAVRKYRE-KKKARTASLEDEVVRLRAVNQQLLKRLQGQA----ALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 89 ~KRmlSNRESARRSR~-RKQahleeLE~QV~qLraeN~qL~~rL~~~a----~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
+|.-+.+.-++.++.+ -+-+.+-+|.+++..|+.+..+|..+++.+. .+.+.+..|+..+..++..++..
T Consensus 28 kR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~ 102 (294)
T COG1340 28 KRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEF 102 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333444444444432 2446777888888888888888888887543 23444555666666666666644
No 307
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.24 E-value=1.2e+02 Score=29.68 Aligned_cols=50 Identities=28% Similarity=0.218 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ-------GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~-------~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+..++.|+.+++.|+.+-+++..++. ++..|+.|+...+.....+..|++
T Consensus 323 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 323 EAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544 355666666666666666666655
No 308
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=46.14 E-value=88 Score=30.43 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=12.6
Q ss_pred ccccCCCCCC---CCCCcccceeccc
Q 024384 42 HTHTCNPPGP---DSSHTHTCFHVHT 64 (268)
Q Consensus 42 hthtcnpp~p---~~~hthtc~h~ht 64 (268)
+..+|.+|.. ++...|.|+|.-.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~le~ 164 (306)
T PF04849_consen 139 PESSESTPLRRNESSLSSQKCIQLEA 164 (306)
T ss_pred cccCCCccccccccccccccchhHHH
Confidence 3445665542 3456677776543
No 309
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=46.10 E-value=89 Score=33.02 Aligned_cols=48 Identities=8% Similarity=0.072 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQ-GQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~-~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
+..|+.+++.|....+++.+||. .+.+||.-+++|.++...|...+.+
T Consensus 609 i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~~~~ 657 (661)
T PRK06664 609 IADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQSNYLKNFNKS 657 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555555555555555544 3677788888888777777666543
No 310
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.09 E-value=1.8e+02 Score=27.94 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhh
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALE--------AEVARLKCLLVDIRGR 154 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LE--------aEn~~LRaqL~elr~r 154 (268)
+..++.-.-++.++++|+..++.+.++-+++...|+....+. .|+.+||+++..|...
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
No 311
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=46.04 E-value=79 Score=32.64 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~ 133 (268)
+..+.++-...|.+|.+|.++|..
T Consensus 280 ~~qy~~Ee~~~reen~rlQrkL~~ 303 (552)
T KOG2129|consen 280 LMQYRAEEVDHREENERLQRKLIN 303 (552)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344455566777888888777753
No 312
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=45.96 E-value=1.2e+02 Score=31.13 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVN 124 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN 124 (268)
|...|.+|.++..+|..+.
T Consensus 53 ~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 53 KELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 313
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=45.95 E-value=73 Score=33.23 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL 131 (268)
+..+.+|+.++..|+.++..|..+|
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l 533 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESEL 533 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888887666
No 314
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=45.68 E-value=55 Score=27.46 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 100 RRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.|++.+.+++-++++++++.|+.+..+|..++.
T Consensus 97 ~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~ 129 (134)
T PF07047_consen 97 WRSARKEAKKEEELQERLEELEERIEELEEQVE 129 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666667666666655543
No 315
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=45.41 E-value=1e+02 Score=29.99 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
-++++|..+.+--..|..|...|.+...|-.++.+||.+..+||.-|.
T Consensus 134 sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 134 SLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665555555667888888777766543
No 316
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.30 E-value=2.4e+02 Score=29.10 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVD 150 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~e 150 (268)
++|+.|+.++..|.++++.+..+|+ +...|++++..++++...
T Consensus 83 KqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~ 129 (475)
T PRK13729 83 KQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVT 129 (475)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 3344444444444444444444443 234455555555555443
No 317
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=45.11 E-value=1.1e+02 Score=24.68 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL 131 (268)
.+..|.++|.+||+||..+.
T Consensus 27 ka~~~~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 27 KAKKQNAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444666666666665554
No 318
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.82 E-value=1.1e+02 Score=32.27 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=36.8
Q ss_pred hccCcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 89 KKRPLGNREAVRKYREK-KKARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 89 ~KRmlSNRESARRSR~R-KQahleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+++..+|+..-|-+.+ =|.-+..+++=|.+++..++.+.+.|. +....|.|+..|+.+..+|+..|+
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766554443 344455555556666665555555554 234455555555555554444433
No 319
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=44.72 E-value=1.8e+02 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 101 KYREKKKARTASLEDEVVRLRAVNQQL 127 (268)
Q Consensus 101 RSR~RKQahleeLE~QV~qLraeN~qL 127 (268)
.-|.++..+.+.++.++..+++.-..|
T Consensus 108 ~~R~~~~~~~~~~~~~L~k~~~~~~Kl 134 (216)
T cd07627 108 AQRQKLWQYWQSAESELSKKKAQLEKL 134 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444433333
No 320
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=44.61 E-value=1.6e+02 Score=27.13 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL 131 (268)
.+.+..+..+++.|+++..++.+++
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~ 158 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEI 158 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555444
No 321
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.46 E-value=1.1e+02 Score=23.47 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 114 EDEVVRLRAVNQQLLK 129 (268)
Q Consensus 114 E~QV~qLraeN~qL~~ 129 (268)
.+++++|..+-+.|-+
T Consensus 11 De~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSK 26 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 322
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=44.30 E-value=1.3e+02 Score=27.12 Aligned_cols=11 Identities=45% Similarity=0.561 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 024384 137 LEAEVARLKCL 147 (268)
Q Consensus 137 LEaEn~~LRaq 147 (268)
|++|+.+||.+
T Consensus 201 Le~ei~~l~~~ 211 (221)
T PF05700_consen 201 LEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 323
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=44.30 E-value=87 Score=30.60 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024384 135 AALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~ 153 (268)
..|..|+..||...+.+..
T Consensus 51 ~~L~~e~~~lr~~sv~~~~ 69 (310)
T PF09755_consen 51 KHLQEENRALREASVRIQA 69 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555544444333
No 324
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=44.25 E-value=42 Score=26.05 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024384 135 AALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl 155 (268)
..||.++...|+.|..++.++
T Consensus 62 ~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 62 EELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 345555556666666555543
No 325
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=44.03 E-value=1.9e+02 Score=24.18 Aligned_cols=46 Identities=9% Similarity=0.115 Sum_probs=31.6
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+..+.-+.|...|..=++.+++.+.++.+.+.+-++++....
T Consensus 36 ~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~ 81 (159)
T PRK13461 36 SRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYK 81 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667777777777777777777777777777666665543
No 326
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=43.92 E-value=2.1e+02 Score=26.38 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
|=+||-|+=-.+.+.-+.+.=.-++..|.+|...|.
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~ 55 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLN 55 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444444343443444444444444433
No 327
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=43.80 E-value=2.1e+02 Score=24.98 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024384 113 LEDEVVRLRAVNQQL 127 (268)
Q Consensus 113 LE~QV~qLraeN~qL 127 (268)
|+.++.++...-.+|
T Consensus 103 l~~~~~~~~~~~~~l 117 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKL 117 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 328
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=43.77 E-value=47 Score=22.64 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~ 132 (268)
.|..+.++||...+||..+|.
T Consensus 5 kL~sekeqLrrr~eqLK~kLe 25 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLE 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477888899999988888874
No 329
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.73 E-value=1.2e+02 Score=26.83 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQ-GQAALEAEVARLKCLLVD 150 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~~rL~-~~a~LEaEn~~LRaqL~e 150 (268)
-|.+..+.+++|+.++++|+++.+.+..--- ....+..++..++..+..
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666655543322100 133444555555554443
No 330
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.56 E-value=77 Score=33.83 Aligned_cols=41 Identities=27% Similarity=0.271 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 024384 113 LEDEVVRLRAVNQQLLKRL----QGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 113 LE~QV~qLraeN~qL~~rL----~~~a~LEaEn~~LRaqL~elr~ 153 (268)
+|.|-.+||.+...+.-|- ++|..||.||.-|.-++..||+
T Consensus 147 ~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 147 VEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 3444444555444444332 2455666666666666665554
No 331
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=43.49 E-value=84 Score=27.07 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 110 TASLEDEVVRLR-AVNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 110 leeLE~QV~qLr-aeN~qL~~rL~~------------~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
++.|++++++|+ .+.-++.++|+. |.+-..+.+.|...+.+|..+|..
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556777777775 356566666542 334445556666677777777763
No 332
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=43.36 E-value=1.5e+02 Score=33.39 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVN 124 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN 124 (268)
++-..+|+ +|...+.|+.++..++++-
T Consensus 362 ~~~n~i~~-~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 362 EIENSIRK-LKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44444443 3445666777776666654
No 333
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=43.29 E-value=1.5e+02 Score=26.10 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLK 129 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV~qLraeN~qL~~ 129 (268)
.|+||.--.+-++.|+++..+|.+.-.+-..|..
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999888776555555444433
No 334
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=43.22 E-value=63 Score=34.55 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
++.++.|+.++++|+.+.+.+.++|+
T Consensus 810 ~~e~~rL~K~l~kl~~ei~~~~~kL~ 835 (874)
T PRK05729 810 EAELARLEKELAKLEKEIERVEKKLS 835 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556677777777777777777776
No 335
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.15 E-value=2e+02 Score=28.16 Aligned_cols=60 Identities=23% Similarity=0.180 Sum_probs=41.4
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 91 RPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 91 RmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
+.+.-++.--|.|+|=...+.-=|.+|.-|..+.....+.| ..|+.|+.++|.+|...+.
T Consensus 71 ~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqi---e~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 71 SLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQI---EKLEQELKRCKSELERSQQ 130 (307)
T ss_pred hHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666777777777777777665 5688999999998875543
No 336
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=43.14 E-value=1.1e+02 Score=21.69 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+.+++|+.-|++|....-.|..-+.-+..=..-....+..|..+..+|.
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i~ 51 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKIE 51 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999988877777776555444555666677777766654
No 337
>PRK10698 phage shock protein PspA; Provisional
Probab=43.14 E-value=1.9e+02 Score=26.17 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL 131 (268)
.++.|+.++...+..-.+|...+
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l 122 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEI 122 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444444444444443
No 338
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.08 E-value=83 Score=35.60 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el 151 (268)
.+||+ +.++++|++|+.++..|+.+...|..++ ..|++...+|+.....+
T Consensus 733 ~~aR~--~~R~~ri~el~~~IaeL~~~i~~l~~~l---~~l~~r~~~L~~e~~~~ 782 (1353)
T TIGR02680 733 AAARE--RARLRRIAELDARLAAVDDELAELAREL---RALGARQRALADELAGA 782 (1353)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhC
No 339
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=43.05 E-value=1.3e+02 Score=33.40 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHH
Q 024384 96 REAVRKYREKKKA--RTASLEDEV 117 (268)
Q Consensus 96 RESARRSR~RKQa--hleeLE~QV 117 (268)
||+||.++++++- ++..|++|+
T Consensus 729 ~e~A~~~qq~~q~~srl~~~~aql 752 (984)
T COG4717 729 REAAREEQQLTQRESRLESLEAQL 752 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888764 344444444
No 340
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=42.98 E-value=2.1e+02 Score=24.40 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
|....+++..||..+..++.++.
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVE 169 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444
No 341
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=42.56 E-value=1.6e+02 Score=31.81 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhhh
Q 024384 94 GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ------------------GQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 94 SNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~------------------~~a~LEaEn~~LRaqL~elr~rl 155 (268)
.--||+..-..|=+.++.+||+++++++++-..-.++-. +.+.+-.|-.+-|..|++|..-|
T Consensus 343 gElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEav 422 (832)
T KOG2077|consen 343 GELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAV 422 (832)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345788888889999999999999999988765543321 13344455566678888876544
Q ss_pred h
Q 024384 156 E 156 (268)
Q Consensus 156 ~ 156 (268)
.
T Consensus 423 r 423 (832)
T KOG2077|consen 423 R 423 (832)
T ss_pred h
Confidence 3
No 342
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=42.53 E-value=1.1e+02 Score=30.02 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKC 146 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRa 146 (268)
..++.|+.+...|+.+..++.+++ ..++.|+.+|+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 64 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKREL---IRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhC
Confidence 456677777777777777776665 346777777764
No 343
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=42.41 E-value=2.1e+02 Score=24.30 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLK 129 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~ 129 (268)
+....+.++.+..++..|+..+.+|..
T Consensus 50 ~~~~~~~~~~~~~~~~~l~~~~~kl~~ 76 (136)
T PF04871_consen 50 EQAAEAELEELASEVKELEAEKEKLKE 76 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456666666666666666553
No 344
>PF14303 NAM-associated: No apical meristem-associated C-terminal domain
Probab=42.39 E-value=1.4e+02 Score=24.41 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=6.9
Q ss_pred hccCcccHHHHH
Q 024384 89 KKRPLGNREAVR 100 (268)
Q Consensus 89 ~KRmlSNRESAR 100 (268)
.+|+++-..|=+
T Consensus 59 ~~RP~G~K~AK~ 70 (154)
T PF14303_consen 59 SKRPIGRKKAKE 70 (154)
T ss_pred cCCCccHHHHHH
Confidence 367777555443
No 345
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=42.36 E-value=76 Score=23.76 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 127 LLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 127 L~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
-...|.++..|.+.+..|+.++..+.
T Consensus 26 aeq~L~~~~~i~~al~~Lk~EIaklE 51 (53)
T PF08898_consen 26 AEQQLAEAGDIAAALEKLKAEIAKLE 51 (53)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHh
Confidence 33333334444555555555544443
No 346
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=42.29 E-value=77 Score=23.13 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQL 127 (268)
Q Consensus 112 eLE~QV~qLraeN~qL 127 (268)
.|..||.-|+.+-+.|
T Consensus 3 aLrqQv~aL~~qv~~L 18 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRL 18 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 347
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=42.11 E-value=1.1e+02 Score=22.55 Aligned_cols=12 Identities=8% Similarity=-0.105 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 024384 142 ARLKCLLVDIRG 153 (268)
Q Consensus 142 ~~LRaqL~elr~ 153 (268)
..++.++..|..
T Consensus 86 ri~~nq~~~L~~ 97 (103)
T PF00804_consen 86 RIRKNQVQALSK 97 (103)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 348
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.98 E-value=86 Score=29.30 Aligned_cols=9 Identities=44% Similarity=0.730 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 024384 123 VNQQLLKRL 131 (268)
Q Consensus 123 eN~qL~~rL 131 (268)
+|..|..++
T Consensus 70 ~N~~lf~r~ 78 (218)
T COG3159 70 ANERLFYRL 78 (218)
T ss_pred hhHHHHHHH
Confidence 444444443
No 349
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=41.97 E-value=45 Score=26.98 Aligned_cols=23 Identities=13% Similarity=0.084 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~r 130 (268)
+.+.+|+.++.+|+.||.-|.+.
T Consensus 78 ~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 78 KQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666544443
No 350
>PRK11239 hypothetical protein; Provisional
Probab=41.87 E-value=44 Score=31.06 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=9.1
Q ss_pred CChhhHHHHHhccc
Q 024384 24 CSMDSFFEDILKDT 37 (268)
Q Consensus 24 ~s~d~~~d~~l~~t 37 (268)
-+++.+++++....
T Consensus 131 ~~Ve~~L~~L~~r~ 144 (215)
T PRK11239 131 AEVESTLEQLANRE 144 (215)
T ss_pred HHHHHHHHHHHhcc
Confidence 35677788876543
No 351
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=41.86 E-value=1.7e+02 Score=31.49 Aligned_cols=58 Identities=24% Similarity=0.256 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 024384 95 NREAVRKYREKK-KARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 95 NRESARRSR~RK-QahleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~elr 152 (268)
+||+.-..|... +..+..+..++...++||..|....+ ....+|.+..+||..+.++.
T Consensus 27 ~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 27 SKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444322 22333334444444456666666554 25678888888888888753
No 352
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=41.73 E-value=1.3e+02 Score=22.35 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024384 135 AALEAEVARLKCLLVDI 151 (268)
Q Consensus 135 a~LEaEn~~LRaqL~el 151 (268)
..+++|+..|+.++..+
T Consensus 41 ~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 41 DKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45567777777766665
No 353
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=41.70 E-value=1.5e+02 Score=22.13 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL 131 (268)
.|..++..|+++|.+|..-|
T Consensus 37 ~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 37 ALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 354
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=41.67 E-value=52 Score=32.95 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEV 141 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn 141 (268)
+...|..|-..|++||+.|..++ ++||+|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eV---erLE~e~ 62 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEV---ERLENEM 62 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHH---HHHHHHh
Confidence 45667788888888888888776 3455444
No 355
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=41.63 E-value=1e+02 Score=25.48 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=3.1
Q ss_pred ccHHHHH
Q 024384 94 GNREAVR 100 (268)
Q Consensus 94 SNRESAR 100 (268)
+|++-|+
T Consensus 42 ~n~~lAe 48 (150)
T PF07200_consen 42 ENEELAE 48 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 356
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=41.63 E-value=1.7e+02 Score=24.86 Aligned_cols=47 Identities=32% Similarity=0.358 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQ-GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~-~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
++.||.|..+|.+.=.+...+.. .-..++++++.|++.-..+..++.
T Consensus 29 l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~ 76 (126)
T PF09403_consen 29 LNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIE 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45555555555544333333332 234566666666665555544433
No 357
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=41.56 E-value=1.2e+02 Score=30.99 Aligned_cols=56 Identities=27% Similarity=0.253 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 95 NREAVRKYREKKKA-------RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 95 NRESARRSR~RKQa-------hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
--|.|..-|.|-.+ .|+++.-++..||++...+.++ +..|..|+..||..+.++..
T Consensus 225 ~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r---~K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 225 GEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKR---QKMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred ChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhh
Confidence 34555555665444 4444555555555555444444 56788888888887776543
No 358
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.55 E-value=1.5e+02 Score=27.58 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 024384 98 AVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG--------QAALEAEVARL 144 (268)
Q Consensus 98 SARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~--------~a~LEaEn~~L 144 (268)
++-+-|.-+|..++.+++.+..++++..+|..++.. ...+.+|+.|-
T Consensus 153 ~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k~e~~Rf 207 (243)
T cd07666 153 GVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALKADWERW 207 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888777777666666642 33455555554
No 359
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=41.45 E-value=1.2e+02 Score=27.91 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCLLVDI 151 (268)
Q Consensus 136 ~LEaEn~~LRaqL~el 151 (268)
.|+..+..||.++..+
T Consensus 124 ~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 124 ALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 360
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=41.45 E-value=2.3e+02 Score=26.19 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 024384 140 EVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 140 En~~LRaqL~elr~rl~~ 157 (268)
++..++.++..++..+..
T Consensus 204 ~~~~~~~~l~~~~~~l~~ 221 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEV 221 (423)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 344445555555555554
No 361
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=41.44 E-value=76 Score=30.34 Aligned_cols=48 Identities=27% Similarity=0.384 Sum_probs=35.1
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 85 d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
..|.+|+.+.+.-+.-+++.-.-..|..||.|+.++.+++.-...+|.
T Consensus 142 p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~ 189 (271)
T PF13805_consen 142 PSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLS 189 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 466777888888776666555555788999999888888877666665
No 362
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.38 E-value=2.8e+02 Score=26.41 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=31.9
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~r 130 (268)
+..+....-+.++..=..+++.+.+|++++..|+.+-+....+
T Consensus 222 ~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e 264 (344)
T PF12777_consen 222 KLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKE 264 (344)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777788888889998888888877665544
No 363
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.37 E-value=1.2e+02 Score=30.36 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 024384 139 AEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 139 aEn~~LRaqL~elr~rl~ 156 (268)
.|+..||++|..+..|+.
T Consensus 276 ~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 577888888887666554
No 364
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=41.24 E-value=1.5e+02 Score=29.11 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 96 REAVRKYREKKKARTASLEDEV--------VRLRAVNQQLLKRLQGQAALEAEVAR 143 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV--------~qLraeN~qL~~rL~~~a~LEaEn~~ 143 (268)
|..+.|-|.+=-..++-+.+.. -.|++||++|++++. .|++++.+
T Consensus 30 ~~~~e~~r~~~~d~~ap~~~~~~~p~~~~y~~L~~EN~~Lk~Ena---~L~~~l~~ 82 (337)
T PRK14872 30 RPVYEKIQDTFVSLCSKFFPKFRQGPSSHALVLETENFLLKERIA---LLEERLKS 82 (337)
T ss_pred cHHHHHHHHhhHHHhchhhHHHhCcchHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4445555555554444444433 478888888887764 34444433
No 365
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=41.05 E-value=1.1e+02 Score=31.12 Aligned_cols=63 Identities=24% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
.-.++.+.+=+++|.+||.++++++.+..+....+.. .+.++.....|+.|..+-+++|...+
T Consensus 55 ~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L 121 (420)
T COG4942 55 REQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQL 121 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777888888888888888877776666642 23444445555554444444444333
No 366
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=40.98 E-value=2.3e+02 Score=24.31 Aligned_cols=46 Identities=4% Similarity=0.083 Sum_probs=30.0
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+..+.-+.|...+..=+.-+++.+.++.+.+.+-++++....
T Consensus 53 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~ 98 (167)
T PRK08475 53 SRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAK 98 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666677777777777777666666654
No 367
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.97 E-value=2.2e+02 Score=27.94 Aligned_cols=14 Identities=36% Similarity=1.021 Sum_probs=8.2
Q ss_pred cccccccCCCCCCC
Q 024384 39 ACTHTHTCNPPGPD 52 (268)
Q Consensus 39 ~cththtcnpp~p~ 52 (268)
.|.--|-=-||-|.
T Consensus 44 ~C~dNHGikPP~PE 57 (305)
T PF15290_consen 44 SCGDNHGIKPPNPE 57 (305)
T ss_pred ecccCCCCCCCCHH
Confidence 36666666666664
No 368
>PRK11239 hypothetical protein; Provisional
Probab=40.95 E-value=39 Score=31.43 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 024384 112 SLEDEVVRLR 121 (268)
Q Consensus 112 eLE~QV~qLr 121 (268)
.|+++|..|+
T Consensus 187 ~Le~rv~~Le 196 (215)
T PRK11239 187 DLQARVEALE 196 (215)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 369
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=40.94 E-value=2.5e+02 Score=24.57 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL 131 (268)
+.++.++.+|.+|+....+|..+|
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl 128 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKL 128 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554
No 370
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=40.93 E-value=1.7e+02 Score=30.13 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL 131 (268)
+.|+.++.+++.++..+..++
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~ 83 (475)
T PRK10361 63 ELLNNEVRSLQSINTSLEADL 83 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 371
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.86 E-value=2e+02 Score=26.99 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 99 VRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 99 ARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.-|-|.-||...++|.+.+..-|.....|..++.
T Consensus 151 vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie 184 (240)
T cd07667 151 VLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVE 184 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888877777776544444555555543
No 372
>PHA03011 hypothetical protein; Provisional
Probab=40.86 E-value=1.3e+02 Score=25.67 Aligned_cols=14 Identities=36% Similarity=0.422 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCLLV 149 (268)
Q Consensus 136 ~LEaEn~~LRaqL~ 149 (268)
.|.+|..+||.+++
T Consensus 103 ~LraeIDkLK~nia 116 (120)
T PHA03011 103 FLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555543
No 373
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.82 E-value=60 Score=27.95 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
++.++-....|..++..+.+.+...
T Consensus 68 waKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 68 WAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544
No 374
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=40.76 E-value=33 Score=32.13 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~r 130 (268)
++|..||+|+..||++...|+..
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~ 144 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAA 144 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999877654
No 375
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=40.76 E-value=2.2e+02 Score=23.94 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=32.8
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+..++-+.|...+..=++-+++.+.++...+.+-++++....
T Consensus 39 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14473 39 ERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQ 84 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777777777777777777777766554
No 376
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=40.65 E-value=1.7e+02 Score=30.90 Aligned_cols=10 Identities=20% Similarity=0.022 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 024384 144 LKCLLVDIRG 153 (268)
Q Consensus 144 LRaqL~elr~ 153 (268)
++..+..+..
T Consensus 474 ~~~~l~~l~~ 483 (1164)
T TIGR02169 474 LKEEYDRVEK 483 (1164)
T ss_pred HHHHHHHHHH
Confidence 3333333433
No 377
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=40.64 E-value=1.3e+02 Score=23.73 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQ-------AALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~-------a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
+-+.++..+|..|+..-..|...+..- .++.+.+..|-.++.++..-|+..+
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~~~~ 69 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILNPDI 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 346677777777777777777666542 2333444444455555555555443
No 378
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=40.57 E-value=48 Score=34.88 Aligned_cols=44 Identities=30% Similarity=0.333 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
-+.+++.|+.|+..|..++++|.+-+ ..|.+++..|+.++.-.+
T Consensus 421 ~~~e~s~l~~~~vt~~~q~~el~~~v---~~l~~~n~~l~s~~~~~r 464 (669)
T KOG0818|consen 421 MKSELSDLRKQAVTLTKQVQELTEVV---HALQASNAKLQSLMKVNR 464 (669)
T ss_pred hhhhhhhHhhcchhhHHHHHHHHHHH---HHHHhhhHHHHHHHhhcc
Confidence 36789999999999999999998876 568888999988776554
No 379
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=40.56 E-value=54 Score=33.44 Aligned_cols=66 Identities=23% Similarity=0.329 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccc
Q 024384 100 RKYREKKKARTASLEDEVVRLRAVNQQLL--KRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQ 165 (268)
Q Consensus 100 RRSR~RKQahleeLE~QV~qLraeN~qL~--~rL~~~a~LEaEn~~LRaqL~elr~rl~~~igsfp~q 165 (268)
|-..+.-=+++.+...++.+|-.+.+... .+|++....-.++..+++++.+||.+|+...+.||++
T Consensus 406 RG~~e~df~~v~~fi~~av~i~~~~~~~~~~~~lkdf~~~~~~~~~~~~~v~~Lr~~Ve~fa~~fp~p 473 (477)
T KOG2467|consen 406 RGFGEEDFEKVADFIDRAVKIALEIQKEAGGKKLKDFKKFLSENKVMSEEVAELRKRVEEFAGQFPMP 473 (477)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Confidence 33445556677888888888887777655 5677777777888888999999999999888888874
No 380
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=40.56 E-value=97 Score=28.50 Aligned_cols=45 Identities=29% Similarity=0.316 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el 151 (268)
..|...++..+.++.+.+.+.+.|..++ ..|++|+..||..+..+
T Consensus 62 ~~K~~ELE~ce~ELqr~~~Ea~lLrekl---~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 62 RTKQLELEVCENELQRKKNEAELLREKL---GQLEAELAELREELACA 106 (202)
T ss_pred HHhhHhHHHhHHHHHHHhCHHHHhhhhh---hhhHHHHHHHHHHHHhh
Confidence 3477788888888888888888888886 56899999999988877
No 381
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.53 E-value=1.7e+02 Score=31.40 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=25.2
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
+.-+++..=|+.|+.=+.+++.++.+..++.+++++-++..+++
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666655555555554444
No 382
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=40.44 E-value=1.6e+02 Score=22.09 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
++++.+++..++.+......|..+. +.++.+...+..++.+|..
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~---~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRD---AANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666555555555443 4455555556666655544
No 383
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=40.42 E-value=9.3 Score=35.92 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQL 127 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL 127 (268)
|..|+|...+++.|+..-+.|
T Consensus 121 KT~IEEQ~T~I~dLrrlVe~L 141 (243)
T PF08961_consen 121 KTRIEEQATKIADLRRLVEFL 141 (243)
T ss_dssp ---------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444333
No 384
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=40.29 E-value=1.9e+02 Score=23.00 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 95 NRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
|+.++.||=.= ..-+..|+..+.+|......|..-++.-..+|.+|..|-+-+..
T Consensus 30 N~~~~~kY~~~-~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~ 84 (99)
T PF10046_consen 30 NKATSLKYKKM-KDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYE 84 (99)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776432 23466777777888887777777777666777777777654443
No 385
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=40.28 E-value=1.6e+02 Score=32.90 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.||+|..-....|.++...-......|.||..||+||+++...++
T Consensus 363 RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD 407 (1480)
T COG3096 363 RLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALD 407 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555666666665544556788899999999999888777
No 386
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.24 E-value=1.2e+02 Score=25.01 Aligned_cols=10 Identities=40% Similarity=0.414 Sum_probs=7.1
Q ss_pred CcccHHHHHH
Q 024384 92 PLGNREAVRK 101 (268)
Q Consensus 92 mlSNRESARR 101 (268)
|..||.++|.
T Consensus 55 msQNRq~~~d 64 (108)
T PF06210_consen 55 MSQNRQAARD 64 (108)
T ss_pred HHhhHhHHHH
Confidence 4568888774
No 387
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=40.21 E-value=54 Score=32.74 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=5.8
Q ss_pred CCccccee
Q 024384 54 SHTHTCFH 61 (268)
Q Consensus 54 ~hthtc~h 61 (268)
-+||.|+=
T Consensus 148 E~tH~C~m 155 (475)
T PF10359_consen 148 EPTHDCLM 155 (475)
T ss_pred CCceeeEe
Confidence 57888864
No 388
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=40.09 E-value=1.3e+02 Score=24.76 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+...+++|..+..+|+.+.+.|...+.
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~ 30 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLE 30 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666677777766666666653
No 389
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=40.06 E-value=1.2e+02 Score=28.27 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 024384 134 QAALEAEVARLKCLL 148 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL 148 (268)
+..|-+|++.|+.++
T Consensus 195 ydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 195 YDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555444
No 390
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=39.93 E-value=10 Score=30.88 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.+.+.+||.++..|+++-..|..++.
T Consensus 12 aK~~~~LE~~l~~l~~el~~L~~~l~ 37 (118)
T PF08286_consen 12 AKELSDLESELESLQSELEELKEELE 37 (118)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555555553
No 391
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=39.87 E-value=2.2e+02 Score=27.97 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
...+.+++..|+.++.+|...+...
T Consensus 384 ~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 384 KKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777776666644
No 392
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=39.83 E-value=1.2e+02 Score=26.16 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
+++.++.+.+.-....-..|...+ ..-++|+..||.+|.++..
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~---~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAEL---RAKDSEIDRLREKLDELNR 122 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333 4457888889988888644
No 393
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=39.82 E-value=69 Score=31.24 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=17.3
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 100 RKYREKKKA---RTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 100 RRSR~RKQa---hleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+.+|++.+. ++++|..++..++.++.-|.+++.
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 445555443 333455555555666666666554
No 394
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.80 E-value=1.9e+02 Score=24.53 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL 131 (268)
.+++++..++.....+.+++
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEI 146 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 395
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=39.72 E-value=45 Score=36.21 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaq 147 (268)
||+...+=.|+..++..+.+|++.|--.|..|-+|+.....|+.-|..||..
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~ 72 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLI 72 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHH
Confidence 5666555555666666666666666666666666665555555555555543
No 396
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=39.68 E-value=69 Score=33.46 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaq 147 (268)
.++.+|-+++..||++|+.+++||+ .+|.|+.+++.+
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~---~~e~~L~r~~~~ 406 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLR---ELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 4677777888889999999988874 467777777765
No 397
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=39.68 E-value=3.3e+02 Score=27.91 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 118 VRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 118 ~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
+.||.+...|.++| ...+.|++.|+.++.--...|+.-|
T Consensus 352 aaLrkerd~L~keL---eekkreleql~~q~~v~~saLdtCi 390 (442)
T PF06637_consen 352 AALRKERDSLAKEL---EEKKRELEQLKMQLAVKTSALDTCI 390 (442)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 66777777777776 4456777777777766555555443
No 398
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=39.65 E-value=1.6e+02 Score=22.73 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~ 132 (268)
+.-.++.+|-.+|.+|...|.
T Consensus 3 e~~~~l~~LL~EN~~LKealr 23 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEALR 23 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHH
Confidence 345566777777777777764
No 399
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=39.56 E-value=1.4e+02 Score=29.15 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
+.....|+.+|.++++++..|+..
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~ 252 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQ 252 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777788888877776654
No 400
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=39.44 E-value=1.8e+02 Score=24.65 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=37.7
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024384 90 KRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 90 KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~r 154 (268)
+|-.+||||-| -|++-+....++...|-.+|..+..+-+....|..-+-.|-..+.-|..+
T Consensus 58 ~~q~r~rES~~----Er~K~~~s~~~~q~Lm~rQN~mm~~qqqsidslsksvgklahkvdllehk 118 (121)
T PF10669_consen 58 KRQKRNRESKR----ERQKFIWSMNKQQSLMNRQNNMMKQQQQSIDSLSKSVGKLAHKVDLLEHK 118 (121)
T ss_pred HHHHHhhhhHH----HHHhHHhhhhHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 44555777643 45666777777777788888887777665555555555555544444333
No 401
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=39.36 E-value=83 Score=32.17 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 101 KYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 101 RSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
-.|.||+..+++||.-|.-=++|-.....|.
T Consensus 343 ~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kA 373 (446)
T PF07227_consen 343 FERQRKKPQIEELESIVRIKQAEAKMFQLKA 373 (446)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999998866666655554443
No 402
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.35 E-value=2.3e+02 Score=28.47 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhh
Q 024384 94 GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG--------QAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 94 SNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~--------~a~LEaEn~~LRaqL~elr~r 154 (268)
.-||..|+-|+.+-.++.-|.+.+++-..+...-.++|.. ...|.+...+|+....+..++
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~ 282 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK 282 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 4566667777777666666666665555444444444431 234445555565555553333
No 403
>smart00338 BRLZ basic region leucin zipper.
Probab=39.30 E-value=1.5e+02 Score=21.45 Aligned_cols=18 Identities=44% Similarity=0.457 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024384 136 ALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~ 153 (268)
.|+++|..|+.++..|+.
T Consensus 37 ~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 37 QLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555544444433
No 404
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=39.22 E-value=1.5e+02 Score=28.90 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
+++...|+.++.+|+.+...+-+....+..|+.|+...|..+..+-.|...
T Consensus 348 ~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe 398 (458)
T COG3206 348 EQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQE 398 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555556777888888888877777666553
No 405
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=39.20 E-value=1.6e+02 Score=22.93 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.=|..|++++.+|+.+-++|..+++
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~ 41 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYK 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999954443
No 406
>smart00340 HALZ homeobox associated leucin zipper.
Probab=39.18 E-value=68 Score=23.23 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024384 135 AALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~ 153 (268)
..|-.||.+|+.++.+||.
T Consensus 15 e~LteeNrRL~ke~~eLra 33 (44)
T smart00340 15 ESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777765
No 407
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=39.04 E-value=1.5e+02 Score=24.98 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+.+.+|..++.++.++-+.=+.+|+ ..++++.+.|...+..+.+.|.
T Consensus 10 ~ki~~l~~~~~~i~~~~~~~I~~i~--~~~~~~~~~l~~~i~~l~~~l~ 56 (149)
T PF07352_consen 10 RKIAELQREIARIEAEANDEIARIK--EWYEAEIAPLQNRIEYLEGLLQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666665554444443 2334444444444444444433
No 408
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=39.02 E-value=1.5e+02 Score=26.29 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQA 135 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a 135 (268)
+++.|.+++.+|+.+.++|+..-.++.
T Consensus 48 Q~~~LR~~~~~L~~~l~~Li~~Ar~Ne 74 (225)
T PF04340_consen 48 QLERLRERNRQLEEQLEELIENARENE 74 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554433
No 409
>PLN02943 aminoacyl-tRNA ligase
Probab=38.97 E-value=89 Score=34.12 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
++.++.|+.|+++|+++.+.+.++|+
T Consensus 888 ~~E~~rL~K~l~klekei~~~~~kLs 913 (958)
T PLN02943 888 SAEVERLSKRLSKMQTEYDALAARLS 913 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45556677777777777777777776
No 410
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=38.94 E-value=2.1e+02 Score=23.59 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=19.0
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRA 122 (268)
Q Consensus 89 ~KRmlSNRESARRSR~RKQahleeLE~QV~qLra 122 (268)
.-.-.+-||+|+--+.=+|...+.|+.--++|..
T Consensus 50 ag~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 50 AGGAFGKREAAQEEQYFRKKEKEQLKKLKEKLKE 83 (100)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCccchHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888887665555555444443333333
No 411
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=38.94 E-value=1e+02 Score=26.56 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRA 122 (268)
Q Consensus 107 QahleeLE~QV~qLra 122 (268)
+.+|.+...+++.|+.
T Consensus 33 k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444444443
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.94 E-value=1.9e+02 Score=30.96 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 97 EAVRKYREK--KKART--ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 97 ESARRSR~R--KQahl--eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+|....|+. ++.++ ++++..|+.|+.+-++-+++| ..++.+...|+.....|.+|++
T Consensus 543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L---~~l~e~~~~l~~~ae~LaeR~e 603 (717)
T PF10168_consen 543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKEL---QELQEERKSLRESAEKLAERYE 603 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
No 413
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=38.84 E-value=83 Score=33.10 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=9.8
Q ss_pred ccccchHHH-hhccCccc
Q 024384 79 DTAESTEKK-TKKRPLGN 95 (268)
Q Consensus 79 d~~e~~d~K-K~KRmlSN 95 (268)
.+.|.+++| |.|||..|
T Consensus 514 l~peqkaeREkERR~aNN 531 (632)
T KOG3910|consen 514 LNPEQKAEREKERRMANN 531 (632)
T ss_pred cChhhhhhHHHHHHhhhh
Confidence 444445555 66777766
No 414
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=38.74 E-value=1.6e+02 Score=23.46 Aligned_cols=9 Identities=44% Similarity=0.641 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 024384 123 VNQQLLKRL 131 (268)
Q Consensus 123 eN~qL~~rL 131 (268)
+|.+|..+|
T Consensus 6 qNk~L~~kL 14 (76)
T PF11544_consen 6 QNKELKKKL 14 (76)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 344444444
No 415
>PLN03217 transcription factor ATBS1; Provisional
Probab=38.58 E-value=71 Score=26.29 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRL 120 (268)
Q Consensus 108 ahleeLE~QV~qL 120 (268)
.+|.+|..++.+|
T Consensus 20 dqi~dLvsKLq~l 32 (93)
T PLN03217 20 DQINDLIIKLQQL 32 (93)
T ss_pred HHHHHHHHHHHHH
Confidence 4455554444443
No 416
>COG5293 Predicted ATPase [General function prediction only]
Probab=38.49 E-value=1.6e+02 Score=30.95 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=35.4
Q ss_pred ccCcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 90 KRPLGNREAVRKYREKK-KARTASLEDEVVRLRAVNQQLLKRLQ------GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 90 KRmlSNRESARRSR~RK-QahleeLE~QV~qLraeN~qL~~rL~------~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
|+|.-||-+--.+--.| ++-|.+++.++..|..+..+++.-|. .+..|-.|..+++..|++++-||+
T Consensus 330 r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie 403 (591)
T COG5293 330 RAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIE 403 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhh
Confidence 66777765544433222 33444555555555555555554443 244555666666666666555544
No 417
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=38.34 E-value=1.1e+02 Score=23.11 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024384 136 ALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~rl~ 156 (268)
.++.++..|+.++..+..++.
T Consensus 73 ~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 73 KLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444
No 418
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.24 E-value=96 Score=33.45 Aligned_cols=56 Identities=30% Similarity=0.252 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH--HHHHHHHHHHHHHHhhh
Q 024384 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRL--------QGQAALE--AEVARLKCLLVDIRGRI 155 (268)
Q Consensus 100 RRSR~RKQahleeLE~QV~qLraeN~qL~~rL--------~~~a~LE--aEn~~LRaqL~elr~rl 155 (268)
-++|+.|+..++.|+++...|+..++.|..-= .-+..+- .|+++||.++..+..|.
T Consensus 551 ~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~ 616 (716)
T KOG4593|consen 551 SKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRN 616 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHH
Confidence 37899999999999999998888776654321 0122222 47777877777654443
No 419
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=38.21 E-value=1.4e+02 Score=28.05 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 133 GQAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 133 ~~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
+.+.|.+||+.|+..+..++..|.-++
T Consensus 117 EF~~lr~e~EklkndlEk~ks~lr~ei 143 (220)
T KOG3156|consen 117 EFANLRAENEKLKNDLEKLKSSLRHEI 143 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777766666666655555443
No 420
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.07 E-value=1.3e+02 Score=23.64 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LR 145 (268)
.+..|+.++..|.+...+|...+.++..+..++..|.
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555555555554
No 421
>PF13974 YebO: YebO-like protein
Probab=38.02 E-value=73 Score=25.53 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 95 NRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
||.|.|.. ++++=|++-++|.+.+|. |+++|.
T Consensus 19 nRaSvRAN-----EQI~LL~~ileqQKrQn~-LL~rL~ 50 (80)
T PF13974_consen 19 NRASVRAN-----EQIELLEEILEQQKRQNA-LLRRLC 50 (80)
T ss_pred HHHHHhHH-----HHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 77777654 467778888888888886 445553
No 422
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=38.01 E-value=83 Score=23.92 Aligned_cols=45 Identities=29% Similarity=0.312 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
.++..||.-+.=|+.+....++. |-+|+.+|+..-.+|.-+|...
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~------LH~EIe~Lq~~~~dL~~kL~m~ 47 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKG------LHAEIERLQKRNKDLTFKLIMK 47 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccccceeeeec
Confidence 46677777777788777777666 4689999999888877766543
No 423
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=37.96 E-value=1.3e+02 Score=27.55 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~elr~ 153 (268)
-+++|+..-.+|+.+|..|...+- .++.|-+|+.-||.++..+..
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666667766666653 355666666666666655433
No 424
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.92 E-value=1.8e+02 Score=31.21 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=18.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 94 GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 94 SNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
.-++.+.+-++.=++..++|+.+.++|+.+-..+++++
T Consensus 534 ~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~ 571 (782)
T PRK00409 534 QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555555554444
No 425
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=37.88 E-value=1e+02 Score=32.33 Aligned_cols=43 Identities=28% Similarity=0.277 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKCLLVD 150 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~-~a~LEaEn~~LRaqL~e 150 (268)
+.-+++|.|.+.=+++.++|.+++|. ...||.|.++.|++|++
T Consensus 271 kEW~~ae~qaKnPKAekqalnqhFQ~~v~sLEee~a~erqqlve 314 (615)
T KOG3540|consen 271 KEWEEAETQAKNPKAEKQALNQHFQKTVSSLEEEAARERQQLVE 314 (615)
T ss_pred HHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777888888888775 55788888888888876
No 426
>PRK07737 fliD flagellar capping protein; Validated
Probab=37.85 E-value=1.5e+02 Score=30.07 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQ-GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~-~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
++..|+.|++.|...-+++.+|+. .+.+||.-++.|.++-.-|...+.
T Consensus 449 ~i~~l~~~i~~~~~rl~~~e~ry~~qf~ale~~~s~mnsq~s~L~~~l~ 497 (501)
T PRK07737 449 DLNQIETQIDRFQDRLKQIEDRYYKKFSAMEKAIQKANEQSMYLMNALG 497 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555566655555555556654 467788888888888777766653
No 427
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=37.82 E-value=2.9e+02 Score=24.94 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 024384 137 LEAEVARLKCLLV 149 (268)
Q Consensus 137 LEaEn~~LRaqL~ 149 (268)
++.++..|+.++.
T Consensus 158 ~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 158 LEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 428
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=37.75 E-value=1.7e+02 Score=30.31 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 133 GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 133 ~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
++..|+.|....+.....+..|++
T Consensus 377 e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 377 DLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655555
No 429
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=37.53 E-value=66 Score=24.29 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~r 130 (268)
++||++.+..|++|...+...
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAA 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444333
No 430
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=37.49 E-value=1.6e+02 Score=22.75 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~ 132 (268)
+|..++.+|+.+-+.|...+.
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~ 22 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAA 22 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665554
No 431
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=37.46 E-value=1.5e+02 Score=28.95 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
++++||+.+..|......+...+ ..++.++..|...|.+|..++..
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~---~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAI---KELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHhhccC
Confidence 44444444444444444443333 34567777888888888777664
No 432
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=37.43 E-value=1.7e+02 Score=30.70 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=5.6
Q ss_pred CCCCCCCCccc
Q 024384 48 PPGPDSSHTHT 58 (268)
Q Consensus 48 pp~p~~~htht 58 (268)
..|-.|+|+.-
T Consensus 290 ~k~s~f~~~ek 300 (594)
T PF05667_consen 290 DKGSRFTHSEK 300 (594)
T ss_pred ccccccccccc
Confidence 34445555554
No 433
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.35 E-value=1.6e+02 Score=23.27 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
..|+.+++.|..+...|.+++ ..++.+...|+..|.+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~---~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQE---EDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344444444444444443333 3344444455544444
No 434
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=37.33 E-value=1.7e+02 Score=26.00 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 113 LEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 113 LE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
|.+|+.+.+..|+.|...| ..|..+..+|+.+|.
T Consensus 86 LReQLEq~~~~N~~L~~dl---~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDL---QKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 7777777788888887776 344555555555444
No 435
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=37.31 E-value=1.6e+02 Score=28.47 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhh
Q 024384 108 ARTASLEDEVVRLRAVNQ-QLLKRLQ--------GQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~-qL~~rL~--------~~a~LEaEn~~LRaqL~elr~rl 155 (268)
++++.|+.|+.++....+ ++..++. ....++.++..|..++.+++.++
T Consensus 60 ~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~ 116 (372)
T PF04375_consen 60 QQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQL 116 (372)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655444 3333332 12334444555555544444443
No 436
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=37.08 E-value=3e+02 Score=24.34 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 100 RRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
++-..||..+-+.|.+.+..++.+-.++...+. .-.+++...+..|.....+|+.-
T Consensus 7 ~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~---~~~a~v~~~~~~l~~~~~ri~~m 62 (158)
T PF09486_consen 7 RTLIQRRRRRERRLRARLAAQRRALAAAEAELA---EQQAEVEAARQRLRAHDARIDAM 62 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHH
Confidence 456678888888899999999888888877763 33455555555566666666643
No 437
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.99 E-value=1.9e+02 Score=31.41 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=32.8
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 024384 90 KRPLGNREAVRKYREKKKARTASLEDEVV---RLRAVNQQLLKRLQG 133 (268)
Q Consensus 90 KRmlSNRESARRSR~RKQahleeLE~QV~---qLraeN~qL~~rL~~ 133 (268)
-..+.+++++-+.|+--.+..++++.++. +|.+.|..+..+|+.
T Consensus 206 ~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqe 252 (716)
T KOG4593|consen 206 NQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQE 252 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34577889999999988888888888873 566666666666654
No 438
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.95 E-value=2.5e+02 Score=26.06 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=42.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhh
Q 024384 93 LGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQ----AALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 93 lSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~----a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
..-=|.+.+.|.....+.++|+.+...|+.+.+.|...|... -.+-.....++-.+++...|+.-
T Consensus 101 ~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwtD 169 (203)
T KOG3433|consen 101 GESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWTD 169 (203)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334566677888888888899999999998888887777531 12223334455555555555553
No 439
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.94 E-value=2e+02 Score=29.30 Aligned_cols=67 Identities=25% Similarity=0.265 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024384 96 REAVRKYREKKKA-RTASLEDEVVRLRAVNQQLLKRLQGQ----AALEAEVARLKCLLVDIRGRIEGEIGSF 162 (268)
Q Consensus 96 RESARRSR~RKQa-hleeLE~QV~qLraeN~qL~~rL~~~----a~LEaEn~~LRaqL~elr~rl~~~igsf 162 (268)
-+.+.++|-+|.+ .+.++++.+.....+-+.++..|+.. ..-..++..||....+++..|-....+|
T Consensus 92 e~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~ 163 (569)
T PRK04778 92 EELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSF 163 (569)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3567778877754 46777888887777777777777653 3344566777777777777776554443
No 440
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=36.71 E-value=12 Score=38.94 Aligned_cols=46 Identities=28% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
....|+.+||.++.+|+.++..|.........|+.|+..|+.+|..
T Consensus 254 ~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~ 299 (722)
T PF05557_consen 254 EQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLER 299 (722)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888877766556666666666555443
No 441
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=36.45 E-value=2.3e+02 Score=23.02 Aligned_cols=15 Identities=40% Similarity=0.297 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCLLVD 150 (268)
Q Consensus 136 ~LEaEn~~LRaqL~e 150 (268)
.+..||..|+.++..
T Consensus 60 ~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 60 ALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555544443
No 442
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.40 E-value=2.5e+02 Score=26.75 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~ 133 (268)
+.+..|++++.+|.+|...|.+++..
T Consensus 57 ~e~~s~Q~~~~~L~~ev~~~~~~~~s 82 (247)
T COG3879 57 KELRSLQKKVNTLAAEVEDLENKLDS 82 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666555555543
No 443
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=36.39 E-value=2e+02 Score=29.41 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024384 97 EAVRKYREKKKA-RTASLEDEVVRLRAVNQQLLKRLQGQA----ALEAEVARLKCLLVDIRGRIEGEIGSF 162 (268)
Q Consensus 97 ESARRSR~RKQa-hleeLE~QV~qLraeN~qL~~rL~~~a----~LEaEn~~LRaqL~elr~rl~~~igsf 162 (268)
+.+.++|-+|-+ .+.++++++..+..+-..|...|.... .-..++..|+.....++..|.....+|
T Consensus 89 ~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~ 159 (560)
T PF06160_consen 89 EYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSY 159 (560)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456677766643 456677777777777777777766432 333456667777777777766554443
No 444
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=36.36 E-value=2.7e+02 Score=23.79 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL 131 (268)
.+..|+.|..+|+-+-+.++...
T Consensus 28 ~i~~~d~el~QLefq~kr~~~e~ 50 (131)
T PF11068_consen 28 QIQQLDQELQQLEFQGKRMIKEI 50 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554
No 445
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=36.35 E-value=88 Score=26.86 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
...-.+||..|..+...|+.||..|...|
T Consensus 91 ~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 91 HLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 33444566667777777776666665544
No 446
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=36.33 E-value=1.7e+02 Score=25.79 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL 131 (268)
.+.|+.++..+.++..+|...|
T Consensus 81 r~~l~~~~~~~e~~~a~l~~~l 102 (158)
T PF09486_consen 81 RDVLEERVRAAEAELAALRQAL 102 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 447
>PLN02678 seryl-tRNA synthetase
Probab=36.26 E-value=1.6e+02 Score=29.74 Aligned_cols=27 Identities=7% Similarity=0.297 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccc
Q 024384 137 LEAEVARLKCLLVDIRGRIEGEIGSFP 163 (268)
Q Consensus 137 LEaEn~~LRaqL~elr~rl~~~igsfp 163 (268)
|..|+..|..++.++...|...+-.+|
T Consensus 83 Lk~ei~~le~~~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 83 LKKEITEKEAEVQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444444445555555554444444
No 448
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=36.20 E-value=1.3e+02 Score=26.97 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRA 122 (268)
Q Consensus 109 hleeLE~QV~qLra 122 (268)
.|..+|+++.-||.
T Consensus 37 EL~KvEeEI~TLrq 50 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQ 50 (162)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444554444443
No 449
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.09 E-value=1.6e+02 Score=22.11 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024384 135 AALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~ 153 (268)
..|+.++..|+.++.++..
T Consensus 35 ~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 35 DRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5567777778877777764
No 450
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=36.09 E-value=3.2e+02 Score=24.73 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=21.4
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~r 130 (268)
|+++..+.-+.|.+.+..=++.+++.+.++...+.+-++++..
T Consensus 37 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~ 79 (246)
T TIGR03321 37 REKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTK 79 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544455555555555555554444443
No 451
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=36.00 E-value=1.6e+02 Score=30.11 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024384 135 AALEAEVARLKCLLVDIRGRIEGEIG 160 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl~~~ig 160 (268)
..++..+..|.++-.+|+..|+.+|.
T Consensus 470 ~~l~pkL~~l~~~Tr~Lq~~iE~~IS 495 (507)
T PF05600_consen 470 QELEPKLDALVERTRELQKQIEADIS 495 (507)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666667777777764
No 452
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=36.00 E-value=81 Score=33.24 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEV 141 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~~~a~LEaEn 141 (268)
.|.+||.+|+.+|+++.+.|.+..++.+++
T Consensus 620 alkd~v~~lqqd~~kmkk~leeEqkaRrdL 649 (661)
T KOG2070|consen 620 ALKDEVSELQQDNKKMKKVLEEEQKARRDL 649 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888877765433333333
No 453
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.91 E-value=1.7e+02 Score=27.21 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
-+.+-|+.|.+|+.+++..-..|+++|
T Consensus 70 ~~aanL~~lr~Ql~emee~~~~llrQL 96 (211)
T COG3167 70 IQAANLEALRAQLAEMEERFDILLRQL 96 (211)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHhC
Confidence 344455666666666666666666665
No 454
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=35.90 E-value=2.2e+02 Score=30.31 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 024384 139 AEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 139 aEn~~LRaqL~elr~rl~ 156 (268)
.++..|+.++.+|+|-|.
T Consensus 300 ~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHhhcCce
Confidence 556677777777777655
No 455
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.79 E-value=1.6e+02 Score=27.93 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+++-|++|..-...|...|.+|.+.|+
T Consensus 4 rr~sl~el~~h~~~L~~~N~~L~~~Iq 30 (258)
T PF15397_consen 4 RRTSLQELKKHEDFLTKLNKELIKEIQ 30 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345678888888888888888888875
No 456
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=35.69 E-value=1.2e+02 Score=29.74 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024384 115 DEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 115 ~QV~qLraeN~qL~~rL~ 132 (268)
++|-.|+.++++|.++|.
T Consensus 175 D~v~LLqkk~~~l~~~l~ 192 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLN 192 (323)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567777777777777774
No 457
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=35.60 E-value=1.4e+02 Score=27.68 Aligned_cols=19 Identities=21% Similarity=0.059 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 024384 137 LEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 137 LEaEn~~LRaqL~elr~rl 155 (268)
.++++..+++++...+..+
T Consensus 188 ~~a~~~~~~a~l~~a~~~l 206 (346)
T PRK10476 188 LVAQRAAREAALAIAELHL 206 (346)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3444445555555444444
No 458
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.47 E-value=1.2e+02 Score=23.82 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCLL 148 (268)
Q Consensus 136 ~LEaEn~~LRaqL 148 (268)
.|+.+|..|+.++
T Consensus 86 ~l~~en~~L~~~~ 98 (100)
T PF01486_consen 86 ELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 459
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=35.38 E-value=38 Score=32.40 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=32.6
Q ss_pred CCccccCCCCCCCCccccccCCCCCCCCCCccccC-CCCCCCCccccccccccC
Q 024384 180 GAYVVNPCNMRCDDQVYCLHPGMEDKSGEGIELNG-QGFSGCEFENLQCVGNQS 232 (268)
Q Consensus 180 g~~~mNp~n~~c~~~~~c~~~~~~~~s~~~~~~~g-q~~~~c~f~~l~c~~~~~ 232 (268)
+.-+|.. .|+|..-+.|-- .|..++.-|| +.++.++.+-|==.+++.
T Consensus 83 ~~~~m~a---VYdDgrKVVyaV---~S~~g~~eNGv~~LSSsEVeELi~KAdE~ 130 (278)
T PF03285_consen 83 GSDMMKA---VYDDGRKVVYAV---HSGGGTSENGVHPLSSSEVEELIHKADEV 130 (278)
T ss_pred ccccccc---cccccceEEEEE---ecCCCcccCccccCcHHHHHHHHHhcccc
Confidence 4556666 899999998843 3445555677 778888887776666554
No 460
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=35.35 E-value=2.8e+02 Score=23.60 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=34.7
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|+.+..++-+.|.+.|..=.+-+++-+.++.+.+.+-++++....
T Consensus 41 ~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~ 86 (167)
T PRK14475 41 AYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAK 86 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777788888888888888888888888887777777654
No 461
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.34 E-value=1.7e+02 Score=24.90 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q 024384 118 VRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 118 ~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl 155 (268)
++|....+.|..+|.+ ....+.|+..+|..+..++.-+
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDV 105 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444444443 2344555666665555554433
No 462
>PRK10132 hypothetical protein; Provisional
Probab=35.31 E-value=96 Score=25.62 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
....+|++|+++|+.+.+.|..-+.
T Consensus 5 ~~~~~~~~q~e~L~~Dl~~L~~~le 29 (108)
T PRK10132 5 PNRNDVDDGVQDIQNDVNQLADSLE 29 (108)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777764
No 463
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.26 E-value=1.4e+02 Score=22.46 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024384 135 AALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~ 153 (268)
+.|++|++|+++.+..-+.
T Consensus 31 a~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 31 ALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6678888888877665433
No 464
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=35.25 E-value=78 Score=25.48 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred hHHHhhccCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 84 TEKKTKKRPLGN--REAVRKYREKKKARTASLEDEVVRLRAVNQ 125 (268)
Q Consensus 84 ~d~KK~KRmlSN--RESARRSR~RKQahleeLE~QV~qLraeN~ 125 (268)
.+.|-+++-++. |++--.-..==+.++...|.|+..||.+|+
T Consensus 24 ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 24 VESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 344445555553 333332222234455556666666666663
No 465
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=35.23 E-value=2.4e+02 Score=22.81 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=33.2
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
|+.+..++=+.|...+..=++.+.+.+.++...+.+-.+++....
T Consensus 37 R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~ 81 (140)
T PRK07353 37 REDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAE 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777888888888888888777777664
No 466
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=35.23 E-value=1.8e+02 Score=26.25 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQG-------QAALEAEVARLKCLLVDI 151 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~-------~a~LEaEn~~LRaqL~el 151 (268)
.++++|+.++-+-+.+...|...|+. ....+.|+..|+.++..+
T Consensus 47 ~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~ 97 (206)
T PF14988_consen 47 KQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKM 97 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888777763 234556666666555543
No 467
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.20 E-value=2.5e+02 Score=24.58 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 118 VRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 118 ~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
..++.+.+.|..++ ..|+++|..|..++..+.
T Consensus 85 d~~~~e~k~L~~~v---~~Le~e~r~L~~~~~~~~ 116 (158)
T PF09744_consen 85 DQWRQERKDLQSQV---EQLEEENRQLELKLKNLS 116 (158)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhh
Confidence 45666666666665 456777777665554433
No 468
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.89 E-value=3.2e+02 Score=26.07 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQ 125 (268)
Q Consensus 109 hleeLE~QV~qLraeN~ 125 (268)
.+.+|+.+.++|..+-.
T Consensus 79 el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 79 ELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 469
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.77 E-value=2e+02 Score=27.32 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=28.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 92 mlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+..=+.-=.---.+-..++..|+.||.+|.+......+.|+
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333445567777888999999999888877777775
No 470
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=34.76 E-value=1.5e+02 Score=28.79 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 024384 137 LEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 137 LEaEn~~LRaqL~elr~rl~ 156 (268)
+..|+.||++-+.+.+.-|.
T Consensus 217 I~EEldRL~sHv~~~~~iL~ 236 (290)
T COG1561 217 IAEELDRLKSHVKEFRNILE 236 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666553
No 471
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.76 E-value=1.8e+02 Score=26.31 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 132 QGQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 132 ~~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
.+-..+|.|+.+.+.++..+++++..-
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888889999988888877643
No 472
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=34.60 E-value=74 Score=24.55 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCLLVDI 151 (268)
Q Consensus 136 ~LEaEn~~LRaqL~el 151 (268)
.++.|+.+|+.++..+
T Consensus 53 ~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 53 QLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444443
No 473
>PHA03252 DNA packaging tegument protein UL25; Provisional
Probab=34.34 E-value=2.2e+02 Score=30.11 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
|+||.+.|.++.....+ .-....|+.|-..|.++++
T Consensus 36 ~~a~~~~R~~~~~~~~~-~~~~~~l~~ELd~l~~~~~ 71 (589)
T PHA03252 36 DDSALRLRRYREDLLRD-RLLRRRLGEELDDLQKRLQ 71 (589)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 57778888555443333 2223456666666665543
No 474
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=34.07 E-value=2.6e+02 Score=23.07 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=13.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 92 PLGNREAVRKYREKKKARTASLEDEVVRLRAVNQ 125 (268)
Q Consensus 92 mlSNRESARRSR~RKQahleeLE~QV~qLraeN~ 125 (268)
+...++..+..-+.=..+.-.++.++..+|.+-.
T Consensus 32 ~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~ 65 (150)
T PF07200_consen 32 LQQEREELLAENEELAEQNLSLEPELEELRSQLQ 65 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3444455554444444444344444444444333
No 475
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=34.06 E-value=2.9e+02 Score=27.13 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024384 136 ALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+......|+.++.++..++.
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELK 399 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 476
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.03 E-value=2e+02 Score=31.94 Aligned_cols=10 Identities=30% Similarity=0.169 Sum_probs=4.7
Q ss_pred HHHHHhcccc
Q 024384 29 FFEDILKDTH 38 (268)
Q Consensus 29 ~~d~~l~~t~ 38 (268)
-|.-+|.+|.
T Consensus 608 ~~~~~l~~t~ 617 (1163)
T COG1196 608 AVRFVLGDTL 617 (1163)
T ss_pred HHHHHhCCeE
Confidence 3444555543
No 477
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=34.00 E-value=3.1e+02 Score=26.80 Aligned_cols=19 Identities=5% Similarity=0.212 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 024384 138 EAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 138 EaEn~~LRaqL~elr~rl~ 156 (268)
++++..+++++..++.++.
T Consensus 297 ~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 297 NQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444443
No 478
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.99 E-value=2.9e+02 Score=28.94 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhh
Q 024384 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ-------------GQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 95 NRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~-------------~~a~LEaEn~~LRaqL~elr~rl 155 (268)
+++...+....-++-++.|++|+..|+.+-.+...+|+ +...+-.++..|+.|+.+++.++
T Consensus 254 i~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~ 327 (726)
T PRK09841 254 LQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFRE 327 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=33.72 E-value=1.7e+02 Score=27.18 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR--LQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~r--L~~~a~LEaEn~~LRaqL~elr~ 153 (268)
+.+...-..|.+.|.+|++++..|-++-.+|-.. +..-..+-+++..|+.+..++..
T Consensus 112 ~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~ 170 (254)
T PF03194_consen 112 EQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELEK 170 (254)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445777888888887777776666553 33445677888888888887776
No 480
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=33.46 E-value=2.6e+02 Score=28.77 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVN 124 (268)
Q Consensus 107 QahleeLE~QV~qLraeN 124 (268)
.+.+++||.+++.|.++.
T Consensus 569 e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 569 EKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455566666665555544
No 481
>PRK11519 tyrosine kinase; Provisional
Probab=33.36 E-value=2.6e+02 Score=29.28 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhh
Q 024384 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAA------LEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 95 NRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~------LEaEn~~LRaqL~elr~rl 155 (268)
.++...+.+..-++-++.|++|+.+|+.+-+...++|+.+.. ++.|...+-.++.+++.++
T Consensus 254 i~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql 320 (719)
T PRK11519 254 LEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQL 320 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH
No 482
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=33.36 E-value=2.9e+02 Score=23.65 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (268)
Q Consensus 86 ~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaq 147 (268)
..|+++-..+-..|.+.|+-=++.+++.+.++...|.+-+.++..-+..+....+-.+-+++
T Consensus 36 ~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~ 97 (161)
T COG0711 36 DERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAE 97 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.22 E-value=1.8e+02 Score=26.65 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
.+.+++++....+|.+|+++-+.++.+++.+..++..-..--..+.+|...|-+.+
T Consensus 61 ~~e~~~l~~~~aei~~l~~~~~~~~qr~q~~~~~q~~r~~~s~~le~L~~~lP~~v 116 (206)
T COG3166 61 TTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQKRAGWSVLLEQLANLLPESV 116 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcccchHHHHHHHHHHhCCCce
No 484
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=33.21 E-value=2.4e+02 Score=23.08 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 96 REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ--GQAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~--~~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
.+.-..-+...++.++.++.++..+..+.+.....+. ....++.|+..+...+......+...+
T Consensus 38 ~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l 103 (158)
T PF03938_consen 38 QAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQL 103 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Probab=33.15 E-value=1.5e+02 Score=20.34 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 024384 114 EDEVVRLRAVNQQLLKRLQ-------GQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 114 E~QV~qLraeN~qL~~rL~-------~~a~LEaEn~~LRaqL~elr 152 (268)
|.||+.|......|...+. .-..|...+.+++..+..++
T Consensus 1 ~vqia~lt~~i~~L~~hl~~~~kD~~~kr~L~~~v~kr~rLl~ylk 46 (46)
T cd00677 1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK 46 (46)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHhC
No 486
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.99 E-value=2e+02 Score=28.51 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDE---VVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~Q---V~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl 155 (268)
+++|..+.--+..|+-|-.-.+.+..+... +..|+++-.+|.++| ..+|++...+..++.++.-+|
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEI---KALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhC
No 487
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.91 E-value=3.3e+02 Score=30.67 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhccccccccc
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKC---LLVDIRGRIEGEIGSFPYQKS 167 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRa---qL~elr~rl~~~igsfp~qk~ 167 (268)
+.+.+.=...++.++.|+.++..++.+..+|...++....+..++..|+. .+..+..++...++ -+++.+
T Consensus 227 ~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~~i~-~~l~~s 299 (1311)
T TIGR00606 227 TSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKME-KVFQGT 299 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCCC
No 488
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=32.86 E-value=2.3e+02 Score=22.87 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhc
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVAR---LKCLLVDIRGRIEGEI 159 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~---LRaqL~elr~rl~~~i 159 (268)
++.|.+++.+--+|+..|++|...+.....-...... ++.++..+...+..+.
T Consensus 16 ~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r 71 (106)
T PF05837_consen 16 QEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSR 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH
No 489
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.81 E-value=3e+02 Score=27.93 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhcccccc
Q 024384 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD-IRGRIEGEIGSFPY 164 (268)
Q Consensus 86 ~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e-lr~rl~~~igsfp~ 164 (268)
.+.+|+--...+....++.+.++.++.|+..-..+....+++.+--..+..+-.++...|.+... +...+...+..+.+
T Consensus 314 ~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m 393 (563)
T TIGR00634 314 KRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALAM 393 (563)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q ss_pred cc
Q 024384 165 QK 166 (268)
Q Consensus 165 qk 166 (268)
.+
T Consensus 394 ~~ 395 (563)
T TIGR00634 394 EK 395 (563)
T ss_pred CC
No 490
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=32.80 E-value=2e+02 Score=24.75 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 110 TASLEDEVVRLRA-VNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 110 leeLE~QV~qLra-eN~qL~~rL~~------------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
++.|++++.+|+. +..++.++|+. |.+-..+...|...+.+|..+|.
T Consensus 12 ~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~ 71 (157)
T PRK01885 12 YARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLE 71 (157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHc
No 491
>COG4420 Predicted membrane protein [Function unknown]
Probab=32.62 E-value=1.4e+02 Score=27.51 Aligned_cols=62 Identities=24% Similarity=0.247 Sum_probs=0.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 92 PLGNREAVRKYREKKKARTASLEDE--VVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 92 mlSNRESARRSR~RKQahleeLE~Q--V~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
|.+||.|+|.-=.=+..+--.|.+| |.+|-.+-..|...|. .+..|+.-||..+.++...+.
T Consensus 109 mSQNRQa~rDr~~a~~d~qvnlkaE~e~~~l~~kLd~lr~~lg---~~~~~l~~lre~l~~i~~~~~ 172 (191)
T COG4420 109 MSQNRQAERDRLRAELDYQVNLKAEQEVAALHEKLDELRLDLG---YVRDELDDLRELLAEIEPELA 172 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhhchHHHHHHHHHhCcccc
No 492
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=32.58 E-value=1.8e+02 Score=31.11 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 96 REAVRKYREK---KKARTASLEDEVVRLRAVNQQLLKR-----LQGQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 96 RESARRSR~R---KQahleeLE~QV~qLraeN~qL~~r-----L~~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
.||+-+-|.+ +-+.+++|+.++.+|+.+.+.+.+. -.....++.++..|+.++..+..++..+
T Consensus 390 d~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (852)
T TIGR03346 390 DEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAE 460 (852)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=32.28 E-value=2.4e+02 Score=21.84 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~-~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
++.|+....+=..+.+.-...|+. ...-..+++.|++++..|..+|.
T Consensus 12 le~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 12 LEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 494
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=32.10 E-value=1.8e+02 Score=24.74 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+.-+.|..||-+|+.....|-.|+ ..+..|+-.||++-.-|-..|+
T Consensus 56 EEKaRlItQVLELQnTLdDLSqRV---dsVKEEnLKLrSENQVLGQYIe 101 (120)
T KOG3650|consen 56 EEKARLITQVLELQNTLDDLSQRV---DSVKEENLKLRSENQVLGQYIE 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhhhhHHHHHHHH
No 495
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=31.98 E-value=1.4e+02 Score=23.07 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARL 144 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~L 144 (268)
..+.+|+++++.|+.+...+..++ ..++++.+.|
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~---~~~~~~~~~L 103 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEI---QALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh
No 496
>PRK14143 heat shock protein GrpE; Provisional
Probab=31.95 E-value=2.3e+02 Score=26.38 Aligned_cols=48 Identities=25% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~-~a~LEaEn~~LRaqL~elr~r 154 (268)
...+.+|+.++..|+++..+|..++.. .+.++.--.|.+.+..+++.+
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~ 114 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQ 114 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=31.93 E-value=3.1e+02 Score=25.30 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhcccc
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD--IRGRIEGEIGSF 162 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e--lr~rl~~~igsf 162 (268)
....++++.++.++|.+|+.....|..+| ..+++....|++.... ...+|+..++.+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki---~e~~~~~~~l~ar~~~akA~~~v~~~~~~~ 159 (225)
T COG1842 101 AKALEAELQQAEEQVEKLKKQLAALEQKI---AELRAKKEALKARKAAAKAQEKVNRSLGGG 159 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 498
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=31.38 E-value=1.6e+02 Score=26.05 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAA 136 (268)
Q Consensus 86 ~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~ 136 (268)
++..++.+..|..|+-|=.+|-....+|..++++.+....++..+|...+.
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas 133 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELAS 133 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=31.37 E-value=1.2e+02 Score=28.81 Aligned_cols=36 Identities=31% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVA 142 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~ 142 (268)
..+.++|.+|..+|+.++++|..++.....+.+++.
T Consensus 38 ~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~ 73 (308)
T PF11382_consen 38 EDQFDSLREENDELRAELDALQAQLNAADQFIAAVA 73 (308)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.36 E-value=2.2e+02 Score=29.94 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
++.++..++|......|+.++.+|..++ ..|++++...+.....|.....
T Consensus 146 E~~qkE~eeL~~~~~~Le~e~~~l~~~v---~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 146 EECQKEKEELLKENEQLEEEVEQLREEV---ERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Done!