Query 024384
Match_columns 268
No_of_seqs 154 out of 334
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 07:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 7.7E-15 2.6E-19 105.4 5.1 46 87-132 1-46 (55)
2 2wt7_A Proto-oncogene protein 99.5 8.4E-14 2.9E-18 101.7 7.8 61 86-149 1-61 (63)
3 1ci6_A Transcription factor AT 99.4 6.6E-13 2.3E-17 97.3 8.4 62 86-150 1-62 (63)
4 1t2k_D Cyclic-AMP-dependent tr 99.4 4.2E-13 1.4E-17 97.0 7.0 60 87-149 1-60 (61)
5 1jnm_A Proto-oncogene C-JUN; B 99.4 3.6E-13 1.2E-17 97.8 5.0 60 87-149 1-60 (62)
6 2dgc_A Protein (GCN4); basic d 99.4 4E-13 1.4E-17 98.8 5.3 46 94-149 16-61 (63)
7 1hjb_A Ccaat/enhancer binding 99.1 2.3E-10 7.7E-15 89.4 7.3 68 86-156 14-81 (87)
8 1gd2_E Transcription factor PA 99.1 1.6E-10 5.4E-15 87.1 6.2 58 88-155 9-66 (70)
9 1gu4_A CAAT/enhancer binding p 99.0 6.9E-10 2.4E-14 85.1 5.6 62 86-150 14-75 (78)
10 3a5t_A Transcription factor MA 98.4 3.5E-09 1.2E-13 85.5 -6.6 47 82-128 32-78 (107)
11 2wt7_B Transcription factor MA 98.2 2.5E-06 8.6E-11 67.2 6.3 66 82-150 22-87 (90)
12 2oqq_A Transcription factor HY 97.1 0.0015 5E-08 45.3 6.1 40 107-149 2-41 (42)
13 3m48_A General control protein 96.3 0.0036 1.2E-07 41.4 3.5 30 109-148 1-30 (33)
14 1deb_A APC protein, adenomatou 96.0 0.025 8.4E-07 40.9 7.1 46 110-155 5-54 (54)
15 2oxj_A Hybrid alpha/beta pepti 96.0 0.0089 3E-07 39.8 4.4 31 108-148 1-31 (34)
16 1kd8_B GABH BLL, GCN4 acid bas 95.9 0.012 4.2E-07 39.5 4.8 33 108-150 1-33 (36)
17 3c3f_A Alpha/beta peptide with 95.8 0.012 4.2E-07 39.1 4.4 32 108-149 1-32 (34)
18 1skn_P DNA-binding domain of S 95.7 0.0016 5.4E-08 51.6 -0.4 32 84-115 59-90 (92)
19 3c3g_A Alpha/beta peptide with 95.6 0.017 5.8E-07 38.2 4.4 31 109-149 1-31 (33)
20 1kd8_A GABH AIV, GCN4 acid bas 95.6 0.014 4.7E-07 39.3 4.0 32 109-150 2-33 (36)
21 1uo4_A General control protein 95.4 0.017 5.7E-07 38.5 3.7 31 109-149 2-32 (34)
22 2bni_A General control protein 95.1 0.02 6.7E-07 38.1 3.5 32 108-149 1-32 (34)
23 2wq1_A General control protein 95.0 0.034 1.2E-06 36.8 4.4 30 109-148 1-30 (33)
24 2hy6_A General control protein 95.0 0.031 1.1E-06 37.1 4.2 31 109-149 2-32 (34)
25 2jee_A YIIU; FTSZ, septum, coi 93.9 0.21 7.3E-06 38.6 7.3 52 110-161 22-77 (81)
26 2j5u_A MREC protein; bacterial 93.5 0.031 1E-06 49.7 2.4 41 109-149 20-60 (255)
27 3he5_A Synzip1; heterodimeric 92.5 0.36 1.2E-05 33.8 6.0 39 110-148 5-47 (49)
28 3a2a_A Voltage-gated hydrogen 92.4 0.24 8.3E-06 36.2 5.3 37 114-150 10-50 (58)
29 2r2v_A GCN4 leucine zipper; co 91.9 0.23 7.9E-06 33.0 4.2 31 109-149 2-32 (34)
30 2lw1_A ABC transporter ATP-bin 91.8 0.82 2.8E-05 34.5 8.0 61 87-156 10-80 (89)
31 3vmx_A Voltage-gated hydrogen 91.3 0.64 2.2E-05 32.9 6.3 37 114-150 3-43 (48)
32 3efg_A Protein SLYX homolog; x 91.0 0.92 3.1E-05 34.3 7.5 48 107-157 13-60 (78)
33 3m91_A Proteasome-associated A 90.3 1.2 4.1E-05 31.6 7.1 42 107-151 8-49 (51)
34 2oa5_A Hypothetical protein BQ 89.3 0.84 2.9E-05 37.1 6.3 51 108-158 8-75 (110)
35 2c9l_Y EB1, zebra, BZLF1 trans 89.0 0.8 2.7E-05 33.7 5.4 44 91-151 5-48 (63)
36 2yy0_A C-MYC-binding protein; 88.5 0.9 3.1E-05 32.1 5.3 31 115-148 19-49 (53)
37 3mq7_A Bone marrow stromal ant 88.5 2.2 7.6E-05 35.2 8.4 38 116-156 72-109 (121)
38 2xv5_A Lamin-A/C; structural p 88.2 2.5 8.5E-05 31.7 7.8 48 100-147 4-55 (74)
39 3s4r_A Vimentin; alpha-helix, 87.5 2.5 8.7E-05 32.6 7.8 50 110-159 18-79 (93)
40 2oqq_A Transcription factor HY 86.9 1 3.5E-05 31.1 4.6 27 106-132 15-41 (42)
41 3hnw_A Uncharacterized protein 86.8 3.2 0.00011 34.1 8.4 52 104-155 71-126 (138)
42 3oja_B Anopheles plasmodium-re 85.5 3.4 0.00011 38.8 9.0 22 136-157 562-583 (597)
43 1go4_E MAD1 (mitotic arrest de 84.9 4.4 0.00015 32.2 8.1 48 109-156 20-92 (100)
44 3s9g_A Protein hexim1; cyclin 84.6 1.5 5.2E-05 35.3 5.3 16 136-151 69-84 (104)
45 1fmh_A General control protein 84.2 2.1 7.2E-05 27.8 4.8 22 110-131 3-24 (33)
46 1wt6_A Myotonin-protein kinase 84.1 3.9 0.00013 31.7 7.1 55 95-152 14-72 (81)
47 2dfs_A Myosin-5A; myosin-V, in 83.6 3.9 0.00013 43.2 9.3 22 135-156 1026-1047(1080)
48 3m9b_A Proteasome-associated A 82.9 1.8 6.1E-05 39.4 5.7 44 107-153 53-96 (251)
49 1gk6_A Vimentin; intermediate 81.1 7.6 0.00026 27.5 7.3 42 107-148 6-51 (59)
50 1gd2_E Transcription factor PA 79.8 2.1 7.3E-05 31.9 4.2 36 107-145 35-70 (70)
51 2v66_B Nuclear distribution pr 79.4 15 0.0005 29.7 9.3 51 109-159 36-90 (111)
52 3o0z_A RHO-associated protein 78.1 13 0.00044 32.0 9.1 36 97-132 79-114 (168)
53 1jcd_A Major outer membrane li 78.0 12 0.00042 26.5 7.5 46 108-156 4-49 (52)
54 3m91_A Proteasome-associated A 77.9 7.9 0.00027 27.3 6.5 40 114-156 8-47 (51)
55 1x8y_A Lamin A/C; structural p 77.6 20 0.00067 27.0 9.1 45 105-149 32-80 (86)
56 1dip_A Delta-sleep-inducing pe 77.3 2.5 8.5E-05 32.5 4.0 30 115-147 15-44 (78)
57 4h22_A Leucine-rich repeat fli 77.1 11 0.00036 30.4 7.7 70 84-156 7-82 (103)
58 1am9_A Srebp-1A, protein (ster 77.1 2.9 0.0001 31.2 4.3 66 91-156 6-74 (82)
59 3lay_A Zinc resistance-associa 76.4 9.9 0.00034 32.4 8.0 57 100-156 77-137 (175)
60 4ati_A MITF, microphthalmia-as 76.3 3.4 0.00012 33.0 4.7 31 87-117 23-53 (118)
61 2xdj_A Uncharacterized protein 76.3 12 0.00043 28.4 7.7 28 104-131 23-50 (83)
62 1hjb_A Ccaat/enhancer binding 76.1 9.9 0.00034 29.3 7.1 22 135-156 46-67 (87)
63 1p9i_A Cortexillin I/GCN4 hybr 75.8 2.9 0.0001 26.8 3.4 21 135-155 9-29 (31)
64 2kz5_A Transcription factor NF 75.8 0.078 2.7E-06 41.9 -4.8 24 85-108 64-87 (91)
65 1gmj_A ATPase inhibitor; coile 75.7 24 0.00081 27.4 9.1 57 93-152 22-78 (84)
66 3s9g_A Protein hexim1; cyclin 75.5 10 0.00035 30.5 7.2 24 107-130 64-87 (104)
67 2v71_A Nuclear distribution pr 75.2 17 0.00059 31.6 9.3 49 110-158 90-142 (189)
68 4etp_A Kinesin-like protein KA 75.2 8.8 0.0003 36.1 8.0 48 108-158 17-64 (403)
69 2eqb_B RAB guanine nucleotide 74.7 16 0.00054 29.0 8.1 23 109-131 13-35 (97)
70 3u06_A Protein claret segregat 74.1 11 0.00036 35.8 8.3 45 109-156 18-62 (412)
71 1dip_A Delta-sleep-inducing pe 73.5 2.6 8.8E-05 32.5 3.2 24 107-130 21-44 (78)
72 2yy0_A C-MYC-binding protein; 72.5 5 0.00017 28.3 4.3 25 108-132 26-50 (53)
73 3a7p_A Autophagy protein 16; c 72.4 15 0.00051 31.2 7.9 14 23-36 23-36 (152)
74 3he5_B Synzip2; heterodimeric 72.4 16 0.00055 25.7 6.8 40 110-152 5-44 (52)
75 3nmd_A CGMP dependent protein 72.1 19 0.00065 27.2 7.6 14 138-151 53-66 (72)
76 2v66_B Nuclear distribution pr 71.7 18 0.00061 29.2 7.9 49 108-156 3-59 (111)
77 1nkp_B MAX protein, MYC proto- 71.7 5.1 0.00018 29.5 4.4 16 139-154 61-76 (83)
78 1gk4_A Vimentin; intermediate 71.6 25 0.00085 26.2 8.3 42 107-148 32-77 (84)
79 1m1j_C Fibrinogen gamma chain; 71.6 16 0.00054 35.0 8.9 65 89-156 72-136 (409)
80 3s4r_A Vimentin; alpha-helix, 71.3 9.2 0.00032 29.4 5.9 38 107-154 55-92 (93)
81 3m9b_A Proteasome-associated A 71.3 5.1 0.00018 36.4 5.1 41 114-157 53-93 (251)
82 2k48_A Nucleoprotein; viral pr 70.8 17 0.00059 29.3 7.6 23 134-156 77-99 (107)
83 1gk7_A Vimentin; intermediate 70.8 7 0.00024 26.1 4.5 34 116-149 4-37 (39)
84 3k66_A Beta-amyloid-like prote 70.8 22 0.00076 32.1 9.1 55 97-151 26-90 (239)
85 3w03_C DNA repair protein XRCC 70.0 10 0.00034 33.0 6.5 39 108-156 145-183 (184)
86 2xu6_A MDV1 coiled coil; prote 69.8 15 0.00052 27.8 6.7 46 108-156 21-66 (72)
87 2v71_A Nuclear distribution pr 69.4 22 0.00077 30.9 8.6 18 137-154 93-110 (189)
88 3ra3_B P2F; coiled coil domain 69.3 5.3 0.00018 25.1 3.4 24 118-144 3-26 (28)
89 3a7p_A Autophagy protein 16; c 69.3 39 0.0013 28.7 9.8 14 136-149 121-134 (152)
90 3swy_A Cyclic nucleotide-gated 69.2 24 0.00082 24.5 7.1 39 112-153 2-44 (46)
91 1am9_A Srebp-1A, protein (ster 69.1 8.6 0.00029 28.6 5.2 29 106-134 48-76 (82)
92 4emc_A Monopolin complex subun 69.1 7.4 0.00025 34.2 5.5 31 102-132 7-37 (190)
93 2jee_A YIIU; FTSZ, septum, coi 69.0 27 0.00094 26.8 8.1 17 110-126 29-45 (81)
94 3i00_A HIP-I, huntingtin-inter 68.9 27 0.00092 28.2 8.4 49 103-154 35-83 (120)
95 3viq_B Mating-type switching p 68.8 25 0.00086 27.2 7.9 56 105-160 5-69 (85)
96 3oja_B Anopheles plasmodium-re 68.5 23 0.0008 33.1 9.2 13 144-156 563-575 (597)
97 3na7_A HP0958; flagellar bioge 68.4 23 0.00079 30.8 8.6 7 194-200 222-228 (256)
98 3pmr_A Amyloid-like protein 1; 68.2 6.6 0.00023 35.1 5.1 55 97-151 38-95 (219)
99 1zme_C Proline utilization tra 67.9 5.4 0.00018 27.5 3.6 25 108-132 44-68 (70)
100 3e98_A GAF domain of unknown f 67.9 14 0.00046 32.7 7.1 22 112-133 69-90 (252)
101 1gu4_A CAAT/enhancer binding p 67.1 16 0.00054 27.6 6.3 18 136-153 47-64 (78)
102 3ol1_A Vimentin; structural ge 66.7 15 0.00052 29.1 6.5 60 85-150 21-80 (119)
103 3nmd_A CGMP dependent protein 66.4 18 0.00061 27.3 6.4 26 106-131 38-63 (72)
104 1dh3_A Transcription factor CR 66.1 31 0.0011 24.1 7.4 22 134-155 31-52 (55)
105 3bas_A Myosin heavy chain, str 66.1 40 0.0014 25.4 8.7 51 106-156 33-87 (89)
106 3hnw_A Uncharacterized protein 65.4 49 0.0017 27.0 9.5 49 107-155 81-133 (138)
107 2xdj_A Uncharacterized protein 64.7 44 0.0015 25.4 8.5 21 111-131 23-43 (83)
108 3mov_A Lamin-B1; LMNB1, B-type 64.3 33 0.0011 26.5 7.8 43 105-147 41-87 (95)
109 1nkp_B MAX protein, MYC proto- 64.2 13 0.00046 27.2 5.4 14 137-150 66-79 (83)
110 2ic6_A Nucleocapsid protein; h 64.1 33 0.0011 26.3 7.6 48 109-156 6-69 (78)
111 2j5u_A MREC protein; bacterial 63.2 3.9 0.00013 36.1 2.7 40 117-156 21-60 (255)
112 2ic9_A Nucleocapsid protein; h 62.9 32 0.0011 27.3 7.6 24 134-157 47-70 (96)
113 4ath_A MITF, microphthalmia-as 62.7 17 0.00058 28.0 5.8 27 107-133 48-74 (83)
114 1go4_E MAD1 (mitotic arrest de 62.4 15 0.00052 29.1 5.7 22 109-130 13-34 (100)
115 3mq7_A Bone marrow stromal ant 62.0 37 0.0013 28.0 8.0 16 136-151 75-90 (121)
116 3uux_B Mitochondrial division 61.9 25 0.00086 31.9 7.7 48 107-157 176-223 (242)
117 2w6b_A RHO guanine nucleotide 61.8 19 0.00066 26.1 5.6 22 111-132 13-34 (56)
118 3swf_A CGMP-gated cation chann 61.7 25 0.00086 26.7 6.5 47 111-157 3-50 (74)
119 1t3j_A Mitofusin 1; coiled coi 61.3 34 0.0012 27.0 7.4 39 111-156 50-88 (96)
120 2v4h_A NF-kappa-B essential mo 61.2 6.6 0.00023 31.9 3.4 43 109-154 63-105 (110)
121 1nkp_A C-MYC, MYC proto-oncoge 61.1 15 0.00051 27.8 5.3 16 137-152 71-86 (88)
122 4fi5_A Nucleoprotein; structur 61.1 34 0.0012 27.9 7.6 26 134-159 64-89 (113)
123 3qne_A Seryl-tRNA synthetase, 60.8 16 0.00054 35.7 6.6 62 102-163 41-109 (485)
124 4etp_A Kinesin-like protein KA 60.8 26 0.0009 32.8 8.0 38 109-149 4-41 (403)
125 3swk_A Vimentin; cytoskeleton, 59.4 16 0.00056 27.6 5.2 41 110-150 2-60 (86)
126 1lwu_C Fibrinogen gamma chain; 58.4 34 0.0012 31.7 8.2 44 109-155 13-56 (323)
127 2lw1_A ABC transporter ATP-bin 58.4 54 0.0018 24.4 7.9 51 106-156 27-87 (89)
128 3cve_A Homer protein homolog 1 58.3 43 0.0015 25.1 7.3 20 113-132 5-24 (72)
129 3tnu_A Keratin, type I cytoske 58.2 28 0.00095 27.7 6.6 12 136-147 88-99 (131)
130 3tnu_B Keratin, type II cytosk 57.7 51 0.0017 26.0 8.1 39 110-148 45-98 (129)
131 1wlq_A Geminin; coiled-coil; 2 57.7 45 0.0015 25.8 7.4 10 136-145 56-65 (83)
132 2xzr_A Immunoglobulin-binding 57.3 74 0.0025 25.7 8.8 57 90-147 34-105 (114)
133 3he4_A Synzip6; heterodimeric 57.2 17 0.00058 25.9 4.6 35 108-145 17-51 (56)
134 3tnu_A Keratin, type I cytoske 57.1 52 0.0018 26.1 8.1 22 110-131 47-68 (131)
135 1uii_A Geminin; human, DNA rep 57.0 58 0.002 25.2 7.9 11 136-146 64-74 (83)
136 1nkp_A C-MYC, MYC proto-oncoge 56.5 35 0.0012 25.7 6.6 18 138-155 65-82 (88)
137 3tul_A Cell invasion protein S 56.4 12 0.00042 32.0 4.4 39 119-157 80-125 (158)
138 1wle_A Seryl-tRNA synthetase; 56.4 48 0.0016 32.3 9.1 22 106-127 82-103 (501)
139 3u1c_A Tropomyosin alpha-1 cha 56.2 66 0.0023 24.7 8.8 22 135-156 54-75 (101)
140 2dq0_A Seryl-tRNA synthetase; 56.1 45 0.0015 31.8 8.8 61 103-163 40-107 (455)
141 3cvf_A Homer-3, homer protein 56.0 23 0.00078 27.0 5.4 20 113-132 11-30 (79)
142 1nlw_A MAD protein, MAX dimeri 55.6 25 0.00086 26.2 5.6 20 108-127 47-66 (80)
143 3tnu_B Keratin, type II cytosk 55.4 27 0.00092 27.7 6.1 16 110-125 84-99 (129)
144 1zxa_A CGMP-dependent protein 55.4 18 0.00061 26.9 4.6 27 105-131 22-48 (67)
145 1ci6_A Transcription factor AT 55.4 38 0.0013 24.1 6.3 18 135-152 40-57 (63)
146 1joc_A EEA1, early endosomal a 55.1 18 0.00063 28.7 5.1 29 106-134 9-37 (125)
147 1t3j_A Mitofusin 1; coiled coi 54.7 51 0.0017 26.0 7.4 25 99-123 45-69 (96)
148 3umh_A Amyloid beta A4 protein 52.9 30 0.001 30.7 6.6 55 97-151 31-88 (211)
149 1gk4_A Vimentin; intermediate 52.6 63 0.0021 24.0 7.4 19 110-128 28-46 (84)
150 3vp9_A General transcriptional 52.6 38 0.0013 26.5 6.4 41 111-151 39-87 (92)
151 1i84_S Smooth muscle myosin he 52.5 38 0.0013 35.6 8.3 22 110-131 880-901 (1184)
152 1fzc_C Fibrin; blood coagulati 52.3 8.2 0.00028 35.8 3.0 46 108-156 4-49 (319)
153 2akf_A Coronin-1A; coiled coil 52.3 19 0.00066 23.3 3.8 22 111-132 2-23 (32)
154 2w6a_A ARF GTPase-activating p 52.2 52 0.0018 24.3 6.6 37 110-146 22-62 (63)
155 3u59_A Tropomyosin beta chain; 52.2 76 0.0026 24.2 8.1 45 108-152 23-71 (101)
156 3iox_A AGI/II, PA; alpha helix 51.8 43 0.0015 33.1 8.0 21 110-130 36-56 (497)
157 1fmh_A General control protein 51.7 24 0.00083 22.8 4.2 27 116-145 2-28 (33)
158 2er8_A Regulatory protein Leu3 51.7 8.3 0.00028 26.8 2.3 21 107-127 48-68 (72)
159 2ve7_C Kinetochore protein NUF 51.6 11 0.00037 33.5 3.5 48 85-132 118-172 (250)
160 1j1d_C Troponin I, TNI; THIN f 51.2 39 0.0013 27.9 6.5 35 88-123 7-41 (133)
161 1wlq_A Geminin; coiled-coil; 2 51.1 29 0.001 26.9 5.4 25 105-129 42-66 (83)
162 3q8t_A Beclin-1; autophagy, AT 51.1 58 0.002 25.0 7.2 19 112-130 22-40 (96)
163 3kqg_A Langerin, C-type lectin 51.1 13 0.00044 29.4 3.5 13 138-150 22-34 (182)
164 3i00_A HIP-I, huntingtin-inter 51.1 72 0.0025 25.7 8.0 43 108-150 15-58 (120)
165 3vem_A Helicase protein MOM1; 51.0 64 0.0022 26.3 7.7 53 97-155 49-102 (115)
166 2efr_A General control protein 50.8 74 0.0025 26.7 8.4 23 108-130 70-92 (155)
167 2wvr_A Geminin; DNA replicatio 50.8 66 0.0023 28.6 8.3 29 116-147 116-144 (209)
168 3w03_C DNA repair protein XRCC 50.3 23 0.00078 30.7 5.2 39 95-133 139-177 (184)
169 1x8y_A Lamin A/C; structural p 49.4 28 0.00097 26.1 5.1 26 107-132 27-52 (86)
170 1i84_S Smooth muscle myosin he 49.0 60 0.002 34.2 9.1 13 109-121 886-898 (1184)
171 2v4h_A NF-kappa-B essential mo 48.9 1.1E+02 0.0036 24.9 9.9 30 95-124 32-61 (110)
172 2wt7_B Transcription factor MA 48.8 51 0.0018 25.6 6.5 39 115-156 48-86 (90)
173 3qh9_A Liprin-beta-2; coiled-c 48.4 64 0.0022 24.9 6.9 40 108-150 26-65 (81)
174 4dzn_A Coiled-coil peptide CC- 48.3 40 0.0014 21.8 4.8 26 117-145 4-29 (33)
175 2z5i_A TM, general control pro 48.3 62 0.0021 22.5 6.3 35 97-131 8-42 (52)
176 1a93_A Coiled coil, LZ, MYC pr 47.6 33 0.0011 22.6 4.4 25 108-132 7-31 (34)
177 1jnm_A Proto-oncogene C-JUN; B 47.4 25 0.00085 24.7 4.2 20 135-154 32-51 (62)
178 3ghg_A Fibrinogen alpha chain; 46.8 44 0.0015 33.5 7.2 12 112-123 114-125 (562)
179 3mq9_A Bone marrow stromal ant 46.6 75 0.0026 29.0 8.4 22 135-156 446-467 (471)
180 1t2k_D Cyclic-AMP-dependent tr 46.4 71 0.0024 22.2 9.3 21 134-154 38-58 (61)
181 2ocy_A RAB guanine nucleotide 46.3 52 0.0018 27.8 6.7 46 109-154 45-94 (154)
182 1ez3_A Syntaxin-1A; three heli 46.1 40 0.0014 25.6 5.6 20 109-128 20-39 (127)
183 2wvr_A Geminin; DNA replicatio 46.1 44 0.0015 29.7 6.5 23 107-129 121-143 (209)
184 2wuj_A Septum site-determining 45.1 30 0.001 24.2 4.3 22 110-131 29-50 (57)
185 3lss_A Seryl-tRNA synthetase; 45.1 78 0.0027 30.8 8.6 29 101-129 44-72 (484)
186 4ath_A MITF, microphthalmia-as 44.8 37 0.0013 26.2 5.1 39 117-155 41-81 (83)
187 2zxx_A Geminin; coiled-coil, c 44.7 89 0.003 23.9 7.2 21 107-127 40-60 (79)
188 2wt7_A Proto-oncogene protein 44.7 79 0.0027 22.2 8.9 21 134-154 39-59 (63)
189 2dgc_A Protein (GCN4); basic d 44.7 83 0.0028 22.4 7.9 21 135-155 40-60 (63)
190 1m1j_B Fibrinogen beta chain; 44.6 1.2E+02 0.0041 29.5 9.8 72 85-156 104-192 (464)
191 2l5g_A GPS2 protein, G protein 44.5 28 0.00095 23.5 3.8 23 106-128 13-35 (38)
192 1uii_A Geminin; human, DNA rep 43.6 40 0.0014 26.1 5.1 29 123-154 47-75 (83)
193 1p9i_A Cortexillin I/GCN4 hybr 43.4 38 0.0013 21.6 4.1 21 111-131 2-22 (31)
194 3ghg_A Fibrinogen alpha chain; 43.3 1.2E+02 0.0041 30.5 9.6 15 119-133 114-128 (562)
195 3kin_B Kinesin heavy chain; mo 43.2 36 0.0012 26.9 5.0 9 28-36 27-35 (117)
196 1nlw_A MAD protein, MAX dimeri 43.2 56 0.0019 24.2 5.8 17 138-154 60-76 (80)
197 2fxo_A Myosin heavy chain, car 43.0 1.2E+02 0.0042 23.9 9.3 16 136-151 108-123 (129)
198 1qvr_A CLPB protein; coiled co 42.9 49 0.0017 33.1 7.1 31 97-127 387-420 (854)
199 1f5n_A Interferon-induced guan 42.7 1E+02 0.0035 30.5 9.2 15 140-154 568-582 (592)
200 2xzr_A Immunoglobulin-binding 42.6 75 0.0026 25.7 6.7 43 109-151 53-95 (114)
201 1l8d_A DNA double-strand break 42.3 73 0.0025 23.9 6.5 12 142-153 74-85 (112)
202 3q8t_A Beclin-1; autophagy, AT 42.2 1.1E+02 0.0039 23.3 8.2 17 114-130 10-26 (96)
203 3pjs_K KCSA, voltage-gated pot 42.1 54 0.0018 26.5 6.0 30 103-132 133-162 (166)
204 2eqb_B RAB guanine nucleotide 42.0 1.1E+02 0.0038 24.1 7.6 54 97-150 8-65 (97)
205 3u06_A Protein claret segregat 41.9 76 0.0026 29.9 7.8 36 111-149 6-41 (412)
206 1joc_A EEA1, early endosomal a 41.9 1.3E+02 0.0043 23.8 9.1 24 108-131 18-41 (125)
207 3qne_A Seryl-tRNA synthetase, 41.3 57 0.0019 31.8 7.0 11 144-154 76-86 (485)
208 1g6u_A Domain swapped dimer; d 41.1 75 0.0026 22.0 5.6 24 134-157 22-45 (48)
209 3htk_A Structural maintenance 41.0 83 0.0028 21.4 8.3 47 106-155 10-56 (60)
210 1jcd_A Major outer membrane li 40.8 88 0.003 22.0 6.1 32 115-149 4-35 (52)
211 4i0x_B ESAT-6-like protein MAB 40.5 1.1E+02 0.0037 22.6 7.5 53 110-162 27-90 (103)
212 3mq9_A Bone marrow stromal ant 39.8 97 0.0033 28.3 8.0 20 134-153 431-450 (471)
213 3t98_B Nucleoporin NUP58/NUP45 39.7 1.3E+02 0.0044 23.2 8.1 50 108-157 26-90 (93)
214 3ghg_C Fibrinogen gamma chain; 39.6 1.6E+02 0.0053 28.4 9.6 67 87-156 70-136 (411)
215 3o0z_A RHO-associated protein 39.3 1.5E+02 0.005 25.5 8.5 15 135-149 65-79 (168)
216 2dq3_A Seryl-tRNA synthetase; 39.2 39 0.0013 31.8 5.4 29 135-163 78-106 (425)
217 1j1e_C Troponin I, TNI; THIN f 39.0 71 0.0024 27.7 6.5 35 88-123 7-41 (180)
218 1wle_A Seryl-tRNA synthetase; 38.8 1E+02 0.0035 30.0 8.4 20 113-132 82-101 (501)
219 2wuj_A Septum site-determining 38.7 42 0.0014 23.5 4.3 22 133-154 35-56 (57)
220 2fxo_A Myosin heavy chain, car 38.7 1.4E+02 0.0049 23.5 8.7 22 111-132 37-58 (129)
221 2rjz_A PILO protein; structura 38.6 18 0.00062 29.4 2.6 28 105-132 12-39 (147)
222 1hlo_A Protein (transcription 37.6 30 0.001 25.3 3.4 22 96-117 17-38 (80)
223 3oja_A Leucine-rich immune mol 37.5 1.4E+02 0.0046 27.4 8.6 26 107-132 434-459 (487)
224 2ocy_A RAB guanine nucleotide 37.5 1.9E+02 0.0063 24.4 9.0 23 134-156 110-132 (154)
225 1ytz_T Troponin T; muscle, THI 37.4 85 0.0029 24.9 6.3 26 136-162 67-92 (107)
226 3vkg_A Dynein heavy chain, cyt 36.8 94 0.0032 37.0 8.9 31 97-127 2024-2054(3245)
227 4b4t_K 26S protease regulatory 36.4 54 0.0018 31.0 5.9 43 108-153 49-91 (428)
228 3he5_B Synzip2; heterodimeric 36.3 1.1E+02 0.0038 21.4 6.4 34 112-148 14-47 (52)
229 3eff_K Voltage-gated potassium 36.1 74 0.0025 24.6 5.8 28 104-131 107-134 (139)
230 1t6f_A Geminin; coiled-coil, c 35.8 51 0.0017 22.1 4.0 9 123-131 8-16 (37)
231 1deb_A APC protein, adenomatou 35.8 59 0.002 23.4 4.6 26 125-153 6-31 (54)
232 1ses_A Seryl-tRNA synthetase; 35.7 1.8E+02 0.0061 27.3 9.3 27 137-163 76-102 (421)
233 2ve7_C Kinetochore protein NUF 35.7 26 0.0009 31.0 3.4 47 101-150 134-180 (250)
234 1gmj_A ATPase inhibitor; coile 35.7 1.5E+02 0.0052 22.9 8.2 14 139-152 58-71 (84)
235 3gp4_A Transcriptional regulat 35.6 73 0.0025 25.4 5.8 20 109-128 89-108 (142)
236 2xus_A Breast cancer metastasi 35.4 1.1E+02 0.0039 21.4 6.1 24 104-131 6-29 (49)
237 3ibp_A Chromosome partition pr 35.2 2.1E+02 0.0073 26.6 9.5 22 138-159 78-99 (302)
238 1ik9_A DNA repair protein XRCC 35.2 1.4E+02 0.0049 25.9 8.0 31 103-133 134-164 (213)
239 3s84_A Apolipoprotein A-IV; fo 35.0 1.7E+02 0.0059 26.0 8.7 9 140-148 89-97 (273)
240 1ic2_A Tropomyosin alpha chain 35.0 1.3E+02 0.0045 21.9 8.9 41 114-157 33-73 (81)
241 3l4q_C Phosphatidylinositol 3- 34.8 1.4E+02 0.0047 25.6 7.6 50 106-158 101-150 (170)
242 3kqg_A Langerin, C-type lectin 34.7 52 0.0018 25.8 4.8 7 139-145 30-36 (182)
243 3thf_A Protein shroom; coiled- 34.1 1.5E+02 0.0051 26.0 7.8 43 102-144 13-55 (190)
244 3iv1_A Tumor susceptibility ge 33.9 1.5E+02 0.0053 22.4 8.4 52 102-153 12-74 (78)
245 3q0x_A Centriole protein; cent 33.6 2.2E+02 0.0074 25.3 9.0 24 108-131 178-201 (228)
246 3pxg_A Negative regulator of g 33.4 84 0.0029 29.1 6.6 50 109-158 395-446 (468)
247 2p4v_A Transcription elongatio 33.2 1.6E+02 0.0054 24.1 7.6 48 109-156 10-70 (158)
248 3gpv_A Transcriptional regulat 32.2 48 0.0017 26.5 4.2 21 136-156 106-126 (148)
249 3q0x_A Centriole protein; cent 32.2 1.4E+02 0.0046 26.6 7.4 40 117-156 173-216 (228)
250 3e98_A GAF domain of unknown f 31.9 1.4E+02 0.0048 26.1 7.5 35 110-144 74-108 (252)
251 1vp7_A Exodeoxyribonuclease VI 31.8 55 0.0019 25.9 4.3 49 108-156 34-82 (100)
252 1ses_A Seryl-tRNA synthetase; 31.3 1.3E+02 0.0043 28.3 7.5 21 136-156 68-88 (421)
253 3sja_C Golgi to ER traffic pro 31.2 1.3E+02 0.0044 22.2 6.0 45 114-158 5-58 (65)
254 1j1d_B Troponin T, TNT; THIN f 31.1 1E+02 0.0036 24.4 5.9 23 136-158 67-89 (106)
255 3jsv_C NF-kappa-B essential mo 30.8 2E+02 0.0067 22.7 8.1 30 95-124 10-39 (94)
256 3fpp_A Macrolide-specific effl 30.8 2.2E+02 0.0076 24.4 8.5 16 139-154 128-143 (341)
257 1x79_B RAB GTPase binding effe 30.8 1.9E+02 0.0065 23.2 7.4 21 111-131 16-36 (112)
258 1lrz_A FEMA, factor essential 30.7 1.4E+02 0.0049 27.2 7.6 25 108-132 247-271 (426)
259 3cve_A Homer protein homolog 1 30.5 1.7E+02 0.0058 21.9 7.1 37 108-144 7-47 (72)
260 4g2k_A General control protein 30.4 81 0.0028 26.1 5.2 40 107-156 13-52 (125)
261 2e7s_A RAB guanine nucleotide 30.1 21 0.00072 29.7 1.7 48 109-156 33-84 (135)
262 4dzo_A Mitotic spindle assembl 30.0 1.3E+02 0.0043 24.2 6.3 40 108-153 4-43 (123)
263 3iox_A AGI/II, PA; alpha helix 29.8 1.6E+02 0.0055 29.2 8.1 14 113-126 46-59 (497)
264 1cii_A Colicin IA; bacteriocin 29.7 2.1E+02 0.0072 28.7 8.9 91 56-155 315-414 (602)
265 3fx0_A NF-kappa-B essential mo 29.4 1.2E+02 0.0042 24.0 5.9 50 105-161 35-87 (96)
266 3vkg_A Dynein heavy chain, cyt 29.4 1.7E+02 0.006 34.9 9.5 10 57-66 1866-1875(3245)
267 3cvf_A Homer-3, homer protein 29.3 1.9E+02 0.0064 22.0 7.1 25 108-132 13-37 (79)
268 1grj_A GREA protein; transcrip 29.3 2.3E+02 0.0079 23.0 8.1 49 108-156 9-70 (158)
269 1rtm_1 Mannose-binding protein 29.2 64 0.0022 24.6 4.3 25 107-131 3-27 (149)
270 3jsv_C NF-kappa-B essential mo 29.2 21 0.00071 28.2 1.5 15 108-122 40-54 (94)
271 2oto_A M protein; helical coil 29.0 2.2E+02 0.0077 22.8 8.6 23 110-132 52-74 (155)
272 3fav_B ESAT-6, 6 kDa early sec 28.8 1.5E+02 0.0053 20.8 8.2 29 134-162 54-82 (94)
273 1s94_A S-syntaxin; three helix 28.7 71 0.0024 26.0 4.7 20 143-162 123-142 (180)
274 2ke4_A CDC42-interacting prote 28.6 1.6E+02 0.0056 22.7 6.5 27 106-132 20-46 (98)
275 3rrk_A V-type ATPase 116 kDa s 28.4 1.4E+02 0.0047 26.4 6.9 34 111-147 95-128 (357)
276 1gk7_A Vimentin; intermediate 28.3 74 0.0025 21.0 3.9 24 109-132 14-37 (39)
277 2ve7_A Kinetochore protein HEC 28.3 97 0.0033 28.1 6.0 24 108-131 185-208 (315)
278 3q4f_C DNA repair protein XRCC 28.3 53 0.0018 28.8 4.0 37 94-130 147-183 (186)
279 4ati_A MITF, microphthalmia-as 28.3 15 0.00051 29.2 0.5 69 84-152 33-111 (118)
280 2lz1_A Nuclear factor erythroi 28.3 0.81 2.8E-05 36.1 -6.7 23 85-107 64-86 (90)
281 2w83_C C-JUN-amino-terminal ki 28.3 1.1E+02 0.0037 23.4 5.3 17 114-130 8-24 (77)
282 1lwu_C Fibrinogen gamma chain; 28.2 1.2E+02 0.0043 28.0 6.7 13 212-224 227-239 (323)
283 2zxx_A Geminin; coiled-coil, c 28.1 1.7E+02 0.0057 22.4 6.3 35 115-152 34-68 (79)
284 2w83_C C-JUN-amino-terminal ki 27.8 2E+02 0.007 21.9 7.4 15 109-123 10-24 (77)
285 2yko_A LINE-1 ORF1P; RNA-bindi 27.5 1.4E+02 0.0046 26.9 6.6 46 109-157 7-52 (233)
286 1fxk_C Protein (prefoldin); ar 27.4 1.5E+02 0.0051 22.9 6.2 23 110-132 3-25 (133)
287 4ani_A Protein GRPE; chaperone 27.2 2.1E+02 0.0072 25.0 7.7 27 106-132 71-97 (213)
288 4dk0_A Putative MACA; alpha-ha 26.9 1.7E+02 0.0057 25.5 7.0 8 72-79 51-58 (369)
289 3h6p_C ESAT-6-like protein ESX 26.8 1.3E+02 0.0044 21.6 5.4 27 135-161 56-82 (96)
290 4b4t_L 26S protease subunit RP 26.8 37 0.0013 32.3 3.0 22 109-130 66-87 (437)
291 1gk6_A Vimentin; intermediate 26.8 1.6E+02 0.0056 20.5 6.0 49 110-158 2-54 (59)
292 3duz_A GP67, major envelope gl 26.7 3.4E+02 0.012 26.7 9.6 47 107-156 276-325 (487)
293 3plt_A Sphingolipid long chain 26.7 1.1E+02 0.0036 27.6 5.8 24 87-110 93-117 (234)
294 3vem_A Helicase protein MOM1; 26.5 2.3E+02 0.0077 23.1 7.1 45 112-156 36-85 (115)
295 3bas_A Myosin heavy chain, str 26.4 2E+02 0.0069 21.4 8.5 19 134-152 44-62 (89)
296 2dq0_A Seryl-tRNA synthetase; 26.3 1.3E+02 0.0044 28.7 6.6 43 114-156 44-93 (455)
297 2zvf_A Alanyl-tRNA synthetase; 26.1 1.1E+02 0.0037 24.3 5.3 17 135-151 42-58 (171)
298 3lvh_D LCB, clathrin light cha 26.0 84 0.0029 27.9 4.9 34 91-124 94-127 (205)
299 2zqm_A Prefoldin beta subunit 25.8 1.5E+02 0.0051 22.0 5.8 19 137-155 82-100 (117)
300 1q08_A Zn(II)-responsive regul 25.7 92 0.0032 22.4 4.4 21 136-156 50-70 (99)
301 3mud_A DNA repair protein XRCC 25.5 1.2E+02 0.0041 26.2 5.7 41 91-131 117-165 (175)
302 1r8e_A Multidrug-efflux transp 25.4 1.4E+02 0.0049 24.9 6.2 8 89-96 69-76 (278)
303 3sjb_C Golgi to ER traffic pro 24.9 1.8E+02 0.0062 22.8 6.1 24 135-158 59-82 (93)
304 4gkw_A Spindle assembly abnorm 24.8 2.7E+02 0.0093 23.6 7.6 47 110-156 13-77 (167)
305 2b5u_A Colicin E3; high resolu 24.6 4.5E+02 0.015 26.4 10.2 10 12-22 218-228 (551)
306 1zxa_A CGMP-dependent protein 23.9 1.1E+02 0.0036 22.7 4.4 19 137-155 37-55 (67)
307 2oto_A M protein; helical coil 23.8 2.8E+02 0.0096 22.2 7.4 12 116-127 30-41 (155)
308 1hwt_C Protein (heme activator 23.5 46 0.0016 23.3 2.3 22 106-127 56-77 (81)
309 2e7s_A RAB guanine nucleotide 23.3 1.5E+02 0.005 24.7 5.6 23 134-156 98-120 (135)
310 3okq_A BUD site selection prot 23.3 3.3E+02 0.011 22.8 10.0 66 93-158 6-80 (141)
311 2zvf_A Alanyl-tRNA synthetase; 23.2 1.3E+02 0.0044 23.9 5.2 20 112-131 29-48 (171)
312 3rrk_A V-type ATPase 116 kDa s 22.9 3.1E+02 0.011 24.1 8.1 27 104-130 229-255 (357)
313 2zdi_C Prefoldin subunit alpha 22.6 30 0.001 27.8 1.3 42 112-156 6-50 (151)
314 2zqm_A Prefoldin beta subunit 22.5 2.4E+02 0.0082 20.9 7.4 25 135-159 87-111 (117)
315 1dkg_A Nucleotide exchange fac 22.3 1.5E+02 0.0052 25.3 5.8 16 116-131 61-76 (197)
316 1fxk_C Protein (prefoldin); ar 22.3 2.7E+02 0.0092 21.4 7.0 24 108-131 8-31 (133)
317 1fxk_A Prefoldin; archaeal pro 22.1 2.3E+02 0.008 20.6 6.3 13 110-122 17-29 (107)
318 1deq_A Fibrinogen (alpha chain 22.0 1.8E+02 0.006 28.1 6.6 7 54-60 26-32 (390)
319 3hhm_B NISH2 P85alpha; PI3KCA, 22.0 1.6E+02 0.0054 27.6 6.2 47 112-158 209-259 (373)
320 2q6q_A Spindle POLE BODY compo 21.9 1.2E+02 0.004 23.0 4.3 51 106-159 15-65 (74)
321 3r2p_A Apolipoprotein A-I; amp 21.7 3.3E+02 0.011 22.3 7.6 18 102-119 83-100 (185)
322 2qyw_A Vesicle transport throu 21.4 2.7E+02 0.0093 21.2 8.4 29 104-132 45-73 (102)
323 2f23_A Anti-cleavage anti-GREA 21.4 3.2E+02 0.011 22.0 8.1 49 109-157 11-71 (156)
324 3rvy_A ION transport protein; 21.4 20 0.00068 30.7 0.0 25 108-132 256-280 (285)
325 2q6q_A Spindle POLE BODY compo 21.3 2.7E+02 0.0092 21.0 8.0 8 124-131 5-12 (74)
326 1m1j_C Fibrinogen gamma chain; 21.2 4.3E+02 0.015 25.1 9.1 24 108-131 41-64 (409)
327 4a9a_A Ribosome-interacting GT 21.2 50 0.0017 30.6 2.7 45 108-156 6-50 (376)
328 1lq7_A Alpha3W; three helix bu 21.0 2.5E+02 0.0084 20.5 6.9 31 118-148 28-64 (67)
329 1ik9_A DNA repair protein XRCC 20.8 2.6E+02 0.0089 24.2 7.0 22 109-130 147-168 (213)
330 2c5k_T Syntaxin TLG1, T-snare 20.8 2.8E+02 0.0097 21.1 6.7 50 108-157 36-93 (95)
331 3u1c_A Tropomyosin alpha-1 cha 20.7 2.8E+02 0.0097 21.1 7.7 16 113-128 42-57 (101)
332 1a93_B MAX protein, coiled coi 20.3 1.5E+02 0.0052 19.5 4.1 18 114-131 13-30 (34)
333 2nrj_A HBL B protein; enteroto 20.3 4.3E+02 0.015 24.1 8.7 57 106-162 121-178 (346)
334 2yo3_A General control protein 20.3 1.3E+02 0.0044 27.6 5.1 47 101-147 209-259 (268)
335 2ve7_A Kinetochore protein HEC 20.3 92 0.0031 28.2 4.1 20 113-132 183-202 (315)
336 2f1m_A Acriflavine resistance 20.2 3.8E+02 0.013 22.3 8.1 50 107-156 59-122 (277)
337 3coq_A Regulatory protein GAL4 20.2 1E+02 0.0035 21.7 3.6 22 108-129 45-66 (89)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.52 E-value=7.7e-15 Score=105.44 Aligned_cols=46 Identities=41% Similarity=0.533 Sum_probs=42.4
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
|+++||++|||||++||+|||+|+++||.+|.+|+.+|..|..++.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999988877653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.48 E-value=8.4e-14 Score=101.72 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=55.0
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 86 ~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
+|++||+.+||+||+|||+||++++++|+.+|..|..+|..|..+| ..|..|+..|+..|.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei---~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEI---ANLLKEKEKLEFILA 61 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999998887 457888888887664
No 3
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.41 E-value=6.6e-13 Score=97.32 Aligned_cols=62 Identities=32% Similarity=0.427 Sum_probs=52.5
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 86 ~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
.|+.+|+.+||.||+|||+||++++++|+.+|..|+.+|.+|..++ ..|+.|+..||..|.+
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i---~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERA---DSLAKEIQYLKDLIEE 62 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 3688999999999999999999999999999999999999999998 6789999999998875
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.41 E-value=4.2e-13 Score=97.03 Aligned_cols=60 Identities=38% Similarity=0.447 Sum_probs=54.9
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
|+++|+.+||+||++||+||++++++||.+|..|..+|..|..++ ..|+.|+..|+.+|+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i---~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEV---TLLRNEVAQLKQLLL 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999998887 568888888888764
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.38 E-value=3.6e-13 Score=97.82 Aligned_cols=60 Identities=35% Similarity=0.462 Sum_probs=50.2
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
|+.||+.+||+||++||+||++++++||.+|..|..+|..|..++ ..|+.|+..||.+|.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v---~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTA---NMLREQVAQLKQKVM 60 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTTC----
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 356777889999999999999999999999999999999998887 567888888887764
No 6
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.37 E-value=4e-13 Score=98.82 Aligned_cols=46 Identities=48% Similarity=0.541 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 94 GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 94 SNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
.|||||||||+||++|+++||.+|.+|+.+|..| ++|+..||.+|.
T Consensus 16 rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L----------~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 16 RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHL----------ENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHC--
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHh
Confidence 3999999999999999999999999999999766 456667776553
No 7
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=99.08 E-value=2.3e-10 Score=89.38 Aligned_cols=68 Identities=31% Similarity=0.393 Sum_probs=57.3
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 86 ~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+...|+..|.+||||||++++++..+++.+|..|+.+|.+|..+| ..|+.|+..||..|..+.+.|-
T Consensus 14 ~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v---~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV---EQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCcHHHh
Confidence 4466677899999999999999999999999999999999999998 5799999999999998877644
No 8
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.08 E-value=1.6e-10 Score=87.11 Aligned_cols=58 Identities=26% Similarity=0.419 Sum_probs=46.9
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024384 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl 155 (268)
..||+..||+|+|.+|+||++||.+||.+|..|+.+++.| ..||..||.++..|+..+
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l----------~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSST----------TLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHTTHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999999999988765 455556665555555443
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.96 E-value=6.9e-10 Score=85.06 Aligned_cols=62 Identities=34% Similarity=0.430 Sum_probs=53.2
Q ss_pred HHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 86 ~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
..-..|+..|.+||+|||+++++...+++.+|..|+.+|.+|..+| ..|+.|+..||..|..
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v---~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV---EQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3455567899999999999999999999999999999999999887 5688888888876543
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.36 E-value=3.5e-09 Score=85.53 Aligned_cols=47 Identities=26% Similarity=0.334 Sum_probs=40.7
Q ss_pred cchHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 82 ESTEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLL 128 (268)
Q Consensus 82 e~~d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~ 128 (268)
+-.+.|.+||.++||+||+++|-||+++.++||.++..|..+..+|.
T Consensus 32 e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 32 EIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLA 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999888877765553
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.19 E-value=2.5e-06 Score=67.15 Aligned_cols=66 Identities=27% Similarity=0.272 Sum_probs=53.6
Q ss_pred cchHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 82 ESTEKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 82 e~~d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
+-...|.+||.+.||-+|.-+|-||..+..+||.++.+|..+.++|...+ ..+..|...+|..+..
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~---~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEV---SRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44578999999999999999999999999999999999999988886664 4455556666555443
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.06 E-value=0.0015 Score=45.33 Aligned_cols=40 Identities=33% Similarity=0.406 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
|+++.+||.+|+.|...|.+|..|+ .-|+.||.-||+.+.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEerv---stLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERL---STLQNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHhc
Confidence 5899999999999999999999998 568999999998763
No 13
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=96.30 E-value=0.0036 Score=41.43 Aligned_cols=30 Identities=53% Similarity=0.575 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL 148 (268)
+|.+||++|++|-.+|.. |++||.+||..|
T Consensus 1 RM~QLE~kVEeLl~~n~~----------Le~EV~RLk~Ll 30 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWN----------LENEVARLKKLV 30 (33)
T ss_dssp --CHHHHHHHHHHHHHHH----------HHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhHH----------HHHHHHHHHHHh
Confidence 477899999999999855 488999999875
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.03 E-value=0.025 Score=40.87 Aligned_cols=46 Identities=28% Similarity=0.401 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl 155 (268)
-++|-.||+-|+.||..|.++|++ ...||.|..-+|..+..+.++|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~~i 54 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcccC
Confidence 478999999999999999999985 4579999999999888887654
No 15
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=96.03 E-value=0.0089 Score=39.77 Aligned_cols=31 Identities=45% Similarity=0.558 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL 148 (268)
++|.+||++|+.|-.+|+. |+.||.+||+.|
T Consensus 1 eRMnQLE~kVEeLl~~n~~----------Le~eV~rLk~ll 31 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXH----------LEXEVXRLKXLV 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhh----------HHHHHHHHHHHH
Confidence 3688999999999888855 488899999875
No 16
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=95.91 E-value=0.012 Score=39.50 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
++|.+||++|++|-.+|.. |+.||+|||..+.+
T Consensus 1 eRMnQLE~KVEeLl~~~~~----------Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWH----------LKNKVARLKKKNAE 33 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHH----------HHHHHHHHHHHhcc
Confidence 3678999999999888855 48889999988765
No 17
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=95.83 E-value=0.012 Score=39.07 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
++|.+||++|+.|-.+|.. |+.||++||..|.
T Consensus 1 eRMnQLEdKVEeLl~~~~~----------Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYH----------XENEXARIXKLLX 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHh
Confidence 3688999999999888744 5899999998763
No 18
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.68 E-value=0.0016 Score=51.63 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.7
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHHHHHHHHH
Q 024384 84 TEKKTKKRPLGNREAVRKYREKKKARTASLED 115 (268)
Q Consensus 84 ~d~KK~KRmlSNRESARRSR~RKQahleeLE~ 115 (268)
...|+.||+..||.||+++|.||.+.++.|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 46788999999999999999999999988864
No 19
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=95.60 E-value=0.017 Score=38.19 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
+|.+||++|+.|-.+|.. |+.||++||..|.
T Consensus 1 RMnQLEdKvEeLl~~~~~----------Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYH----------XENXLARIKXLLX 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHhhH----------HHHHHHHHHHHHc
Confidence 478899999999888754 5889999998763
No 20
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=95.59 E-value=0.014 Score=39.30 Aligned_cols=32 Identities=34% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
+|.+||++|+.|-.+|.. |+.||+|||..+.+
T Consensus 2 RMnQLE~kVEeLl~~~~~----------Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWH----------LENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHH----------HHHHHHHHHHHhcc
Confidence 578899999999888754 58899999988764
No 21
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=95.36 E-value=0.017 Score=38.48 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
+|.+||++|++|-.+|.. ||.||+|||..|.
T Consensus 2 RM~QLEdKVEeLl~~n~~----------Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYH----------IENELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhhHH----------HHHHHHHHHHHHc
Confidence 578899999999888854 5889999998753
No 22
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=95.10 E-value=0.02 Score=38.14 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
++|.+||++|+.|-.+|+. |+.||++||..|.
T Consensus 1 eRMnQLEdKvEeLl~~~~~----------L~~EV~RLk~lL~ 32 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHH----------ICNELARIKKLLG 32 (34)
T ss_dssp --CHHHHHHHHHHHHHHHH----------HHHHHHHHHHHC-
T ss_pred CchhHHHHHHHHHHHccHH----------HHHHHHHHHHHhc
Confidence 3678999999999888754 5889999998753
No 23
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=95.03 E-value=0.034 Score=36.78 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL 148 (268)
+|.+||++|++|-.+|.. |+.||++||..|
T Consensus 1 RMnQLEdKVEell~~~~~----------le~EV~Rl~~ll 30 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYH----------NTNEIARNTKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHH----------HHHHHHHHHHHh
Confidence 477899999999888754 588899998865
No 24
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=95.01 E-value=0.031 Score=37.15 Aligned_cols=31 Identities=32% Similarity=0.359 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
+|.+||++|++|-.+|.. |+.||++||..|.
T Consensus 2 RMnQLEdkVEeLl~~~~~----------Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 2 KVKQLADAVEELASANYH----------LANAVARLAKAVG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHH----------HHHHHHHHHHHhc
Confidence 578899999999888855 4888999998763
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.87 E-value=0.21 Score=38.58 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGEIGS 161 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~~~igs 161 (268)
+.-|.-+|+.|+.+|..|....+. ...|+.||.+|+.+......||++-+|-
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555777788888887777653 4569999999999999999999877664
No 26
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=93.55 E-value=0.031 Score=49.73 Aligned_cols=41 Identities=22% Similarity=0.071 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
.+.+|.+|.++|+++|.+|..++.....+++||++||.+|.
T Consensus 20 ~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 20 DLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788889999999999998888999999999999755
No 27
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=92.47 E-value=0.36 Score=33.78 Aligned_cols=39 Identities=38% Similarity=0.414 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLL 148 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL 148 (268)
+++||.+|+-|..+|..|.++--. .+-||.|++.||..+
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999887321 345777777777654
No 28
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=92.43 E-value=0.24 Score=36.21 Aligned_cols=37 Identities=35% Similarity=0.504 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 024384 114 EDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVD 150 (268)
Q Consensus 114 E~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~e 150 (268)
|.||.+|+..|-+|..++++ ....|.|+.||+..|.+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999998874 56788999999987654
No 29
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=91.87 E-value=0.23 Score=33.01 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
+|.+||++|+.|-.++.. |+.||++||..|.
T Consensus 2 RMnQledKvEel~~~~~~----------l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYH----------NANELARVAKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHH----------HHHHHHHHHHHhc
Confidence 578899999988877754 4778888888764
No 30
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=91.84 E-value=0.82 Score=34.52 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=42.9
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~----------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
||.++++|-. -|+.++.|+.++.+|.++...|..+|.+ ...|-++...+..+|..+-.|+.
T Consensus 10 kk~~~KLSyk---------eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 10 KRSSSKLSYK---------LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp SSSSCSCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677743 3567999999999999999999999862 23455566666666666655553
No 31
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=91.27 E-value=0.64 Score=32.95 Aligned_cols=37 Identities=35% Similarity=0.533 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 024384 114 EDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVD 150 (268)
Q Consensus 114 E~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~e 150 (268)
|.++.+|+.-|.+|..++++ ...+|.|+.||+..|.+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 56889999999999999874 56788999999987653
No 32
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=91.05 E-value=0.92 Score=34.25 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.++|.+||.+++.+.....+|-..| .....++.+|+.++..|.+|+..
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v---~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEAL---ADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999988888887776 34467888999999999998874
No 33
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=90.33 E-value=1.2 Score=31.57 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el 151 (268)
..++.+|..++..|.+.|..|..-|+. -..++..|+++|..|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~---AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKE---ARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 345668899999999999998888743 356666777766654
No 34
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=89.28 E-value=0.84 Score=37.15 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH-HHhhhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQG----------------QAALEAEVARLKCLLVD-IRGRIEGE 158 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~----------------~a~LEaEn~~LRaqL~e-lr~rl~~~ 158 (268)
.-+++|.+|+.+|+-||..|.++|+. .+.+-+-+.+|-++.+. |+.||...
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KIe~kVr~~ 75 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSR 75 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999972 33444455666555443 56666543
No 35
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=88.95 E-value=0.8 Score=33.67 Aligned_cols=44 Identities=34% Similarity=0.346 Sum_probs=28.8
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 91 RPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 91 RmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el 151 (268)
++-.||-|+||+|.|=+..|+-..+-. ++--.||.+||-.+..+
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~va-----------------aaks~en~rlr~l~kqm 48 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVA-----------------AAKSSENDRLRLLLKQM 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhcccchHHHHHHHHh
Confidence 445799999999998766554433221 33446777887766554
No 36
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.54 E-value=0.9 Score=32.14 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (268)
Q Consensus 115 ~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL 148 (268)
.+|..|+.+|+.|..++ ..|.+++..|+++|
T Consensus 19 ~d~eaLk~E~~eLk~k~---~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKY---EAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 56788888887777764 45566666666654
No 37
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.52 E-value=2.2 Score=35.17 Aligned_cols=38 Identities=32% Similarity=0.260 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 116 EVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 116 QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+|..|+.|+..|..+|+ ..++|+.+||.+...+..||.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq---~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQ---DASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHhhchhhhhHhh
Confidence 46666666666666664 357899999998888877765
No 38
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=88.16 E-value=2.5 Score=31.72 Aligned_cols=48 Identities=29% Similarity=0.344 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 024384 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCL 147 (268)
Q Consensus 100 RRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaq 147 (268)
++-|+..+..+..||+++.+++++-+..+..-+. ..+|+.|++.-|..
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888999999999999999987766555432 23455555555544
No 39
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=87.48 E-value=2.5 Score=32.57 Aligned_cols=50 Identities=30% Similarity=0.331 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH---Hhhhhhhc
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG---------QAALEAEVARLKCLLVDI---RGRIEGEI 159 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~---------~a~LEaEn~~LRaqL~el---r~rl~~~i 159 (268)
++.-.++|..|.++|..|..++.. ....++++..||.++..+ ++++..++
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777777777666642 334578888888887775 33444443
No 40
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=86.88 E-value=1 Score=31.13 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.+...++||+.|.-|+.||+.|.+.|+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 456789999999999999999988763
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.76 E-value=3.2 Score=34.13 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl 155 (268)
.+.++..+.|+.++..+..+...|...|.. ...++.++..|+.++.+|..++
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888888888887777777642 4456666677777666665544
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.51 E-value=3.4 Score=38.80 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 024384 136 ALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.+..|+..+++++.++..+++.
T Consensus 562 ~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4455556666666666555543
No 43
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=84.93 E-value=4.4 Score=32.23 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQG-------------------------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~-------------------------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+++|+.+..+|+.++..|.-+|-. +...+.++..|++++..|+.+|.
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665521 23456777888888888887776
No 44
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=84.65 E-value=1.5 Score=35.28 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCLLVDI 151 (268)
Q Consensus 136 ~LEaEn~~LRaqL~el 151 (268)
.|++|+.+||.+-..|
T Consensus 69 eLe~everL~~ENq~L 84 (104)
T 3s9g_A 69 ELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555554444333
No 45
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=84.19 E-value=2.1 Score=27.84 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL 131 (268)
++.||.+|++-.++|-||.+.+
T Consensus 3 vaqlekevaqaeaenyqleqev 24 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 5688999999999997775543
No 46
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=84.07 E-value=3.9 Score=31.70 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024384 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 95 NRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr 152 (268)
|=.||--+=.|-|+= +.+++.+.|..|..+..+|++ +..|.+|+..|+.++.+|+
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776665553 456778999999999999974 6678888888888888865
No 47
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.56 E-value=3.9 Score=43.20 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024384 135 AALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl~ 156 (268)
..|+.|+..||.|+.+|...+.
T Consensus 1026 ~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1026 SELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888999988888875443
No 48
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=82.92 E-value=1.8 Score=39.40 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
..++.+|+.++..|.+.|..|...| ..+..|+.+||.++..|+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~L---k~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETL---KEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHH---HHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 3457788888888888888887776 4567788888888777654
No 49
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=81.08 E-value=7.6 Score=27.55 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLL 148 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL 148 (268)
+..+..||+++.++|++-+.....-+. -.+|+.|++.-|..|
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 567888888888888887666555442 345677776666654
No 50
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=79.84 E-value=2.1 Score=31.87 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LR 145 (268)
...+.+|+.....|..+|..|...| ..|..|+..||
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i---~~L~~El~~lr 70 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKV---RQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHH---HHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcC
Confidence 3457788888889999999888776 55677776654
No 51
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=79.38 E-value=15 Score=29.65 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
.+..|+.++.+|+..+..|..+|.+ +..||-.....-+-|.++..+++..|
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ai 90 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677999999999999999888863 44555555555556667777776554
No 52
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=78.14 E-value=13 Score=32.01 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+.-||.|.+-...+.+|+..|..|..+...+..++.
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777777777776666653
No 53
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=78.04 E-value=12 Score=26.48 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+.+++|..+|.+|..+-.+|...+ ..|..++..-+.+....-.||+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV---~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDA---NAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Confidence 457778888888877777776654 3455555555555555555554
No 54
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=77.93 E-value=7.9 Score=27.33 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 114 EDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 114 E~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+.++..|+.++.+|-.+ +..|.+....-|.++..|+..|+
T Consensus 8 ~~r~~~l~~~l~~L~~r---N~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 8 ARDIHQLEARIDSLAAR---NSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666555 45666666666666666666554
No 55
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=77.63 E-value=20 Score=27.02 Aligned_cols=45 Identities=31% Similarity=0.332 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLV 149 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~ 149 (268)
.-+..+..||+++.++|.+-+......+. -.+|+.|++.-|..|.
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 34566777888888887776655554432 3356777777666553
No 56
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=77.27 E-value=2.5 Score=32.51 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (268)
Q Consensus 115 ~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaq 147 (268)
++|+-||....+|..++ ..||.||..||..
T Consensus 15 EEVevLKe~I~EL~e~~---~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 15 EEVEILKEQIRELVEKN---SQLERENTLLKTL 44 (78)
T ss_dssp TSCHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 45666666666666664 5678899999874
No 57
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=77.07 E-value=11 Score=30.38 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=43.4
Q ss_pred hHHHhhccCccc-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 84 TEKKTKKRPLGN-----REAVRKYREKK-KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 84 ~d~KK~KRmlSN-----RESARRSR~RK-QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.++|=+|=|++| --+|..|---- |..|+++|+.+.+|+.++....+.+ ..+.-....|+.++..+++.|.
T Consensus 7 vEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~---e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 7 VEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEF---EREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 356667778775 45666664433 4567788888888887776655554 4445555566666666665555
No 58
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=77.06 E-value=2.9 Score=31.18 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=34.5
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 91 RPLGNREAVRKYREKKKARTASLEDEVVRL--RA-VNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 91 RmlSNRESARRSR~RKQahleeLE~QV~qL--ra-eN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
|+..--.+-|+.|.+=...+.+|..-|-.. +. .-.-|...+.--..|+.++..|+.+...|+..+.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677777777777777777766321 11 1111222222233455555556555555555544
No 59
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=76.42 E-value=9.9 Score=32.43 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 100 RKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 100 RRSR~RKQahleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+.-|++=++.+.+|..++..++.+-+.|+..=+ ...+|..|+..||.++...|-+..
T Consensus 77 ~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 77 QKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555666666555555555543211 234677788888888887665444
No 60
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=76.34 E-value=3.4 Score=32.98 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=18.0
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEV 117 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV 117 (268)
|.++|+..--.+-||.|.+=...+.+|..-|
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lv 53 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLI 53 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666788888888778888877654
No 61
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=76.27 E-value=12 Score=28.44 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
..=+.++++|..+|..||..++++...|
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l 50 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQL 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445566666666666666666665554
No 62
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=76.10 E-value=9.9 Score=29.31 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024384 135 AALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl~ 156 (268)
..|+.||..||.++..|...+.
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444333
No 63
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=75.83 E-value=2.9 Score=26.84 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024384 135 AALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl 155 (268)
+.||+||.+|++++.++-.++
T Consensus 9 asleaenkqlkakveellakv 29 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888877776654
No 64
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=75.79 E-value=0.078 Score=41.94 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.0
Q ss_pred HHHhhccCcccHHHHHHHHHHHHH
Q 024384 85 EKKTKKRPLGNREAVRKYREKKKA 108 (268)
Q Consensus 85 d~KK~KRmlSNRESARRSR~RKQa 108 (268)
-.|..||+..||.||+++|.||..
T Consensus 64 lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 64 LVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 467899999999999999999853
No 65
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=75.66 E-value=24 Score=27.40 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 93 LGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 93 lSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
.+-||+|+--+.=+++..+.|..--++|.. +|.........|+.++.+++..+.+|.
T Consensus 22 FgKrEaA~Ee~YfrqkekEqL~~LKkkl~~---el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 22 FGKREQAEEERYFRARAKEQLAALKKHKEN---EISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455888887664444444444332222222 222222233556677777777666664
No 66
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=75.51 E-value=10 Score=30.53 Aligned_cols=24 Identities=54% Similarity=0.565 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~r 130 (268)
-+++.+|+.+|.+|+++|+.|+..
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888777654
No 67
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=75.23 E-value=17 Score=31.59 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
+..|+.++..|+..+..|..+|.. +..||.....+.+-+.++..+++..
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a 142 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA 142 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788899999999999999988853 5556666666666666666665543
No 68
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.19 E-value=8.8 Score=36.05 Aligned_cols=48 Identities=21% Similarity=0.201 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
+.+++|+.++++|+.++++|.+++ ..-+.+..+|-.++.++++.|.-.
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 17 EKIAALKEKIKDTELGMKELNEIL---IKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCeEEE
Confidence 333444444444444444444443 223344556667777777776643
No 69
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.69 E-value=16 Score=29.00 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL 131 (268)
.+..|+.+++....+...|..+|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 44444455544444444444444
No 70
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.09 E-value=11 Score=35.77 Aligned_cols=45 Identities=22% Similarity=0.164 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
..++|+.+.+++++++..+.++| ...+.+..+|-.++.++++.|.
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~l---~~~~~~rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 18 RTEELLRCNEQQAAELETCKEQL---FQSNMERKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCEE
Confidence 33444445555555554444443 2234555666677777777665
No 71
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=73.53 E-value=2.6 Score=32.45 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~r 130 (268)
|.+|.+|++++.+|+.||.-|+.-
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777665443
No 72
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.53 E-value=5 Score=28.27 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+.+++|..++..|++++++|..+|.
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666666666666553
No 73
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.44 E-value=15 Score=31.25 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCChhhHHHHHhcc
Q 024384 23 SCSMDSFFEDILKD 36 (268)
Q Consensus 23 s~s~d~~~d~~l~~ 36 (268)
.=|||++|-+-|+.
T Consensus 23 ~~~md~~l~~rL~~ 36 (152)
T 3a7p_A 23 TDSMDDLLIRRLTD 36 (152)
T ss_dssp --------------
T ss_pred chhHHHHHHHHHHH
Confidence 44788776555544
No 74
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.37 E-value=16 Score=25.70 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
-+.|..++++|+..|-||.+-- ..||.-++.||.++..|.
T Consensus 5 naylrkkiarlkkdnlqlerde---qnlekiianlrdeiarle 44 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDE---QNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhH---hhHHHHHHHHHHHHHHHH
Confidence 3456677888888888876553 345555555555554443
No 75
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=72.13 E-value=19 Score=27.20 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 024384 138 EAEVARLKCLLVDI 151 (268)
Q Consensus 138 EaEn~~LRaqL~el 151 (268)
++++..||.+|..+
T Consensus 53 d~eI~~LqseLDKf 66 (72)
T 3nmd_A 53 DELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444433
No 76
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=71.74 E-value=18 Score=29.15 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQG--------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~--------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
++..+|..++.+|+.+..++..++.. ...|+.|+..||..-..+..+|.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888763 33577788888776666555443
No 77
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=71.70 E-value=5.1 Score=29.51 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 024384 139 AEVARLKCLLVDIRGR 154 (268)
Q Consensus 139 aEn~~LRaqL~elr~r 154 (268)
.|+..|+.+...|+.+
T Consensus 61 ~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 61 QDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 78
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=71.64 E-value=25 Score=26.23 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLL 148 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL 148 (268)
+..+..||+++.++|.+-+......+. -.+|+.|++.-|..|
T Consensus 32 q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455666677776666665555444332 234556655555543
No 79
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=71.60 E-value=16 Score=34.96 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=43.0
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 89 KKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 89 ~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+++...|.|.|-+.=.+=+.++..||..|....++.+.|...|. .++..+..|+.++.+|..++.
T Consensus 72 Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~---~~~~~i~~l~~~i~~l~~~~~ 136 (409)
T 1m1j_C 72 KQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHI---MNSNKITQLKQKIAQLESHCQ 136 (409)
T ss_dssp TTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhh
Confidence 45666777777544444455666777767666666666666653 456777788888888877654
No 80
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=71.29 E-value=9.2 Score=29.40 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~r 154 (268)
.+.|++|..+|..+..++..| +.|+..|.+.+.+++.+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l----------~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARV----------EVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhh
Confidence 345555555555555555444 44444455555555444
No 81
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=71.25 E-value=5.1 Score=36.42 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 114 EDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 114 E~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
+..+++|+.++.+|..+ +..|.++...||.++..|+..|+.
T Consensus 53 ~~~l~eL~~ql~~L~ar---Ne~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAAR---NSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp CHHHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666555544 355677777777777777776664
No 82
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=70.78 E-value=17 Score=29.35 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+....++|..|+.++.+|...|.
T Consensus 77 l~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 77 LQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777766654
No 83
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=70.76 E-value=7 Score=26.09 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 116 EVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 116 QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
+..+++..|..|..=|.....||.+|..|..++.
T Consensus 4 EKe~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 4 EKVELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666776666656556677888887777653
No 84
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=70.76 E-value=22 Score=32.14 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=42.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKK-KARTASLEDEVVRLRAVN--------QQLLKRLQG-QAALEAEVARLKCLLVDI 151 (268)
Q Consensus 97 ESARRSR~RK-QahleeLE~QV~qLraeN--------~qL~~rL~~-~a~LEaEn~~LRaqL~el 151 (268)
|.-.|.|+-| -+..+++|.++..|.... +.|..+++. ..+||.|.+.-|.+|++.
T Consensus 26 e~~hr~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~et 90 (239)
T 3k66_A 26 DEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAV 90 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4445556655 466799999999998876 566666664 778999999999999873
No 85
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=69.98 E-value=10 Score=33.02 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.-++.|.+.+..|+++|.+| ..||.+|+.+..++.++++
T Consensus 145 elid~~ld~~~~L~~~n~~L----------qkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHL----------QKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhc
Confidence 46777777777777777554 4567777777777766654
No 86
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=69.83 E-value=15 Score=27.78 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
..+.++..+++.|+...+-+++|| +.||.+=.-|-..|..+..||+
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRl---A~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKI---ANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHH
Confidence 567889999999999999999998 5667777777777777777765
No 87
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=69.40 E-value=22 Score=30.88 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024384 137 LEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 137 LEaEn~~LRaqL~elr~r 154 (268)
|+.|+..||.....+..+
T Consensus 93 Lq~el~~l~~~~~~l~~~ 110 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKY 110 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444433333
No 88
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=69.33 E-value=5.3 Score=25.15 Aligned_cols=24 Identities=46% Similarity=0.582 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 118 VRLRAVNQQLLKRLQGQAALEAEVARL 144 (268)
Q Consensus 118 ~qLraeN~qL~~rL~~~a~LEaEn~~L 144 (268)
.+|+..|..|.+.+ ++||-|++.|
T Consensus 3 rrlkqknarlkqei---aaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEI---AALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred hHHHHhhhHHHHHH---HHHHHHHHHh
Confidence 45666666666554 5666666655
No 89
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=69.29 E-value=39 Score=28.68 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCLLV 149 (268)
Q Consensus 136 ~LEaEn~~LRaqL~ 149 (268)
.|++||..|=..|+
T Consensus 121 kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 121 DLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433333
No 90
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=69.19 E-value=24 Score=24.48 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEV----ARLKCLLVDIRG 153 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~~~a~LEaEn----~~LRaqL~elr~ 153 (268)
+||+.|.+|..--..|..|+. .|-+|. ..||.-+..|..
T Consensus 2 dlEekv~~Le~~ld~LqTr~A---rLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFA---RLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 688889888888888887763 344444 445555554443
No 91
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=69.09 E-value=8.6 Score=28.59 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQ 134 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~~ 134 (268)
--.+|.+|+.+|..|+.++.+|..+++..
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34688888888888888888888877654
No 92
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.08 E-value=7.4 Score=34.19 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
|...=|++|+.=..-|..|..||..|..+|.
T Consensus 7 YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 7 YKNSVKQQIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp -------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555556666666666555553
No 93
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=69.02 E-value=27 Score=26.79 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQ 126 (268)
Q Consensus 110 leeLE~QV~qLraeN~q 126 (268)
+++|..+-..|..++++
T Consensus 29 ieELKekN~~L~~e~~e 45 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 94
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.87 E-value=27 Score=28.22 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~r 154 (268)
...-+..+.+|+.+|.+|.++..+-.... .....|+..||.++..++.+
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~---q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLR---QQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666655443221 12234566777777776544
No 95
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=68.84 E-value=25 Score=27.21 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ---------GQAALEAEVARLKCLLVDIRGRIEGEIG 160 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~---------~~a~LEaEn~~LRaqL~elr~rl~~~ig 160 (268)
+=++.++.|++|..+|.++.+++..+|. .|..+-.++..+|----.|.++|....|
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rg 69 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 3456777888888888888777765443 3555556666666555556666654444
No 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.46 E-value=23 Score=33.08 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhhh
Q 024384 144 LKCLLVDIRGRIE 156 (268)
Q Consensus 144 LRaqL~elr~rl~ 156 (268)
|+.++..++..|.
T Consensus 563 l~~e~~~~~~~~~ 575 (597)
T 3oja_B 563 LRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 97
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.36 E-value=23 Score=30.75 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=3.4
Q ss_pred ccccccC
Q 024384 194 QVYCLHP 200 (268)
Q Consensus 194 ~~~c~~~ 200 (268)
-++|-|-
T Consensus 222 Iv~Cp~C 228 (256)
T 3na7_A 222 MITCPYC 228 (256)
T ss_dssp CEECTTT
T ss_pred EEECCCC
Confidence 3555543
No 98
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=68.16 E-value=6.6 Score=35.10 Aligned_cols=55 Identities=24% Similarity=0.199 Sum_probs=37.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKK-KARTASLEDEVVRLR-AVNQQLLKRLQG-QAALEAEVARLKCLLVDI 151 (268)
Q Consensus 97 ESARRSR~RK-QahleeLE~QV~qLr-aeN~qL~~rL~~-~a~LEaEn~~LRaqL~el 151 (268)
|.-.|.|+=| -+..+++|.|++.|. +.-+.|..+++. ..+||.|++.-|.+|++.
T Consensus 38 e~~hr~k~~~VmkEW~eae~q~k~lpkadkk~m~~rFQ~~v~aLE~E~~~ErqqL~et 95 (219)
T 3pmr_A 38 EERRMRQINEVMREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQRLVET 95 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5555555433 455677777776663 344556666664 678999999999999873
No 99
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=67.87 E-value=5.4 Score=27.52 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.++++|+.+|.+|+.+..+|...|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888887777766553
No 100
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=67.86 E-value=14 Score=32.68 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~~ 133 (268)
=.|-|+..||.+|.+|..+|..
T Consensus 69 L~erQ~~~LR~r~~~Le~~L~~ 90 (252)
T 3e98_A 69 LVERQVRLLRERNIEMRHRLSQ 90 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555543
No 101
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.11 E-value=16 Score=27.59 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024384 136 ALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~ 153 (268)
.|+.||..|+.++..|..
T Consensus 47 ~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 47 ELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555554444443
No 102
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=66.69 E-value=15 Score=29.10 Aligned_cols=60 Identities=13% Similarity=0.286 Sum_probs=37.3
Q ss_pred HHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 85 EKKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 85 d~KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
..+--||.+ +.+..-|.|=+..++.+...+..+|.... ..+.....+|+++..||..+.+
T Consensus 21 ~I~~LR~qi---d~~~~e~a~l~leldn~~~~~edfk~KyE---~E~~~r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 21 EMRELRRQV---DQLTNDKARVEVERDNLAEDIMRLREKLQ---EEMLQREEAENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHhhhcccH
Confidence 334444444 44555566666677777777777766543 2333356788889999887765
No 103
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.38 E-value=18 Score=27.34 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL 131 (268)
|++.+++||.++.++..+.+.|...|
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 104
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=66.12 E-value=31 Score=24.10 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl 155 (268)
...|+.||..|+.++..|+..+
T Consensus 31 v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3568888999998888887654
No 105
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=66.10 E-value=40 Score=25.39 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
-.+...+|+.+..+|..+...|...+.+ ...|.+.-..|-.++.++..||.
T Consensus 33 ~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 33 TERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344556666666666666666555432 34455555566666666666654
No 106
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.38 E-value=49 Score=26.99 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRaqL~elr~rl 155 (268)
.+.+++++.++..|+.+...+..++. ....|..++..|..++..|...+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443 23556666666666666665443
No 107
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=64.67 E-value=44 Score=25.37 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL 131 (268)
-+|..++.+|+.+...|.-.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 345555555555555554444
No 108
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=64.28 E-value=33 Score=26.49 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCL 147 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaq 147 (268)
.-+..+..||+++.+++++-...+..-+. -..|+.|++.-|..
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777766554433321 23455555555544
No 109
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=64.25 E-value=13 Score=27.23 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 024384 137 LEAEVARLKCLLVD 150 (268)
Q Consensus 137 LEaEn~~LRaqL~e 150 (268)
|..++..|+++|..
T Consensus 66 L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 66 LKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555543
No 110
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=64.13 E-value=33 Score=26.29 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQ----------------GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~----------------~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
-|++|++++.+...+..--.++|. .+....++|..|+.++.+|...|-
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666554444333333332 144566777777777777766654
No 111
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=63.23 E-value=3.9 Score=36.12 Aligned_cols=40 Identities=35% Similarity=0.388 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 117 VVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 117 V~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
...|++||++|.+++........++..|+++...|+.-|+
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888887766666777777777777887665
No 112
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=62.85 E-value=32 Score=27.27 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
+....++|..|+.++.+|...|..
T Consensus 47 ~~~R~~~V~~lq~Ki~elkr~lAd 70 (96)
T 2ic9_A 47 LQSRRAAVSALETKLGELKRELAD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777666653
No 113
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=62.72 E-value=17 Score=28.05 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~ 133 (268)
.+++.+++.+.++|...|.+|..|+++
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqE 74 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 355666666666777777777666643
No 114
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.44 E-value=15 Score=29.13 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~r 130 (268)
.+..|..+++.|+.+|..|.++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~ 34 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEE 34 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555444
No 115
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=62.02 E-value=37 Score=27.95 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCLLVDI 151 (268)
Q Consensus 136 ~LEaEn~~LRaqL~el 151 (268)
.|+.|+..|..+|-+.
T Consensus 75 eLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555443
No 116
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=61.93 E-value=25 Score=31.87 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
...+.++..++++|....+.+++|| +.||.+=..|-..|..+..||+.
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RL---A~lEqdEl~LE~eL~~V~~Rief 223 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKI---ANIEQNQLLLEDNLKQIDDRLDF 223 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHH
Confidence 3567888889999999998888887 66777777788888888888873
No 117
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=61.81 E-value=19 Score=26.11 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~ 132 (268)
=.|.+||..|+++|.+|.+.|.
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999987764
No 118
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=61.67 E-value=25 Score=26.70 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~-~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
++||++|.+|..--..|..|+.. .+..++--..||+.+..|..++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56888888888888888888743 222333335566666666665554
No 119
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=61.28 E-value=34 Score=27.03 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+|++|+++|..+.+.|. .+..+...||.+...|...|+
T Consensus 50 ~eL~~EI~~L~~eI~~LE-------~iqs~aK~LRnKA~~L~~eLe 88 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLE-------KMQNNSKLLRNKAVQLESELE 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHH
Confidence 456666666666655554 344555666666555555444
No 120
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=61.19 E-value=6.6 Score=31.87 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~r 154 (268)
.+.-|+.||.-.+..-.. +| ..-..+-.|...|..+|..|..+
T Consensus 63 ~I~vLkaQv~IY~~DF~a--ER-adREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQA--ER-HAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc--ch-hhHHHHHhHHHHHHHHHHHHHHH
Confidence 667777777665544211 11 11122334445555555544443
No 121
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=61.10 E-value=15 Score=27.78 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 137 LEAEVARLKCLLVDIR 152 (268)
Q Consensus 137 LEaEn~~LRaqL~elr 152 (268)
|..++..|+.+|..|+
T Consensus 71 L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 71 LRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555555555555543
No 122
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=61.10 E-value=34 Score=27.88 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 134 QAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
+....++|..|+.++.+|...|...+
T Consensus 64 l~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 64 LTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888777766444
No 123
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=60.83 E-value=16 Score=35.68 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhhccccc
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEV-------ARLKCLLVDIRGRIEGEIGSFP 163 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn-------~~LRaqL~elr~rl~~~igsfp 163 (268)
-|+.-+..+++|.++.+.+.++..++.+.=.+...|.+|+ ..|..++.++...+...+-.+|
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445556666777776666666655533211122344444 4444444555555554444444
No 124
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.81 E-value=26 Score=32.84 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
.+++|+++++.|+.+..+|.+.+. .++.++..|++++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIK---DTELGMKELNEILI 41 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 455666666666666666666653 33444444444333
No 125
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=59.44 E-value=16 Score=27.61 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG------------------QAALEAEVARLKCLLVD 150 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~------------------~a~LEaEn~~LRaqL~e 150 (268)
|.+|..|+..|..+|.+|.-.+.. ...+|+++..||..+.+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 456666666666666666555431 23456666667655544
No 126
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=58.44 E-value=34 Score=31.75 Aligned_cols=44 Identities=32% Similarity=0.226 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl 155 (268)
.+..||..|....++.+.|...|. .+++.+..|+.++.+|..++
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~---~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWR---VNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554442 34455566666666665544
No 127
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=58.37 E-value=54 Score=24.39 Aligned_cols=51 Identities=20% Similarity=0.049 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 106 KKARTASLEDEVVRLRAVNQ----------QLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~----------qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
=-+.|+.||.+++.|.++-. .+..-+.....++.++..+=..+.+|...-+
T Consensus 27 le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~~ 87 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALKN 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 34678899999988887753 2333334578889999998888888866543
No 128
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=58.26 E-value=43 Score=25.10 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024384 113 LEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 113 LE~QV~qLraeN~qL~~rL~ 132 (268)
+..++..+...|+.|..+|+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~ 24 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLS 24 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44444455555555555554
No 129
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.16 E-value=28 Score=27.72 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCL 147 (268)
Q Consensus 136 ~LEaEn~~LRaq 147 (268)
.||+++..+|..
T Consensus 88 ~lE~eL~~~r~e 99 (131)
T 3tnu_A 88 SVEEQLAQLRCE 99 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666555543
No 130
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.72 E-value=51 Score=26.03 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQG---------------QAALEAEVARLKCLL 148 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~---------------~a~LEaEn~~LRaqL 148 (268)
+..|+.++..|+..+..|...|.+ ...||+++..+|..+
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 555666666666666666655542 224666666666543
No 131
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=57.66 E-value=45 Score=25.83 Aligned_cols=10 Identities=30% Similarity=0.258 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 024384 136 ALEAEVARLK 145 (268)
Q Consensus 136 ~LEaEn~~LR 145 (268)
.|+.||..|+
T Consensus 56 ~Lk~en~~L~ 65 (83)
T 1wlq_A 56 RLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 132
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=57.26 E-value=74 Score=25.68 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=28.2
Q ss_pred ccCcccHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 024384 90 KRPLGNREAVRK--------YREKKKARTASLEDEVVRLRAVNQQLLKRLQ-------GQAALEAEVARLKCL 147 (268)
Q Consensus 90 KRmlSNRESARR--------SR~RKQahleeLE~QV~qLraeN~qL~~rL~-------~~a~LEaEn~~LRaq 147 (268)
+|..+|+.|-+. .|.= |+|-+.|-.+-.|.+.-++++.+--. ..--+|.|+++|+..
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~l-Qqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTL-QQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456678877762 2222 22555555554444433333322211 123467777777764
No 133
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=57.24 E-value=17 Score=25.92 Aligned_cols=35 Identities=40% Similarity=0.512 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LR 145 (268)
+.-+.||.-|++|...|.-|.+-+ +.||.+++.|.
T Consensus 17 kenaklenivarlendnanlekdi---anlekdianle 51 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDI---ANLEKDIANLE 51 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHH---HHHHHHHHHHH
Confidence 345678888999998888877766 45666665554
No 134
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.13 E-value=52 Score=26.09 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL 131 (268)
+..|+.++..|+..+..|...|
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444444444444444444
No 135
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=57.01 E-value=58 Score=25.19 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 024384 136 ALEAEVARLKC 146 (268)
Q Consensus 136 ~LEaEn~~LRa 146 (268)
.++.+|..||.
T Consensus 64 ~lk~en~eL~e 74 (83)
T 1uii_A 64 RLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 136
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=56.45 E-value=35 Score=25.73 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 024384 138 EAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 138 EaEn~~LRaqL~elr~rl 155 (268)
+.+...|+.+-..|+.+|
T Consensus 65 ~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 65 ISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 137
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=56.40 E-value=12 Score=31.95 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 119 RLRAVNQQLLKRLQ-------GQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 119 qLraeN~qL~~rL~-------~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.|....+++..||. +|+.+++++..||..+...+..++.
T Consensus 80 ~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 80 AATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp HHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554 4888999999999999988877663
No 138
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=56.37 E-value=48 Score=32.26 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQL 127 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL 127 (268)
-+..+++|.++.+++.++..++
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444443
No 139
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=56.23 E-value=66 Score=24.69 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024384 135 AALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl~ 156 (268)
..|+.|+..+...|.+...++.
T Consensus 54 ~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 54 RVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666655544443
No 140
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=56.14 E-value=45 Score=31.82 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKR-------LQGQAALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~r-------L~~~a~LEaEn~~LRaqL~elr~rl~~~igsfp 163 (268)
|+.-+..+++|.++.+.+.++..++.+. +..-..|..++..|..++.++...+...+-.+|
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLP 107 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4444455555555555555555443221 011233444455555555555666655544444
No 141
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=55.96 E-value=23 Score=27.05 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024384 113 LEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 113 LE~QV~qLraeN~qL~~rL~ 132 (268)
+..++..+...|+.|..+|+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~ 30 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLR 30 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 33444444444444444443
No 142
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=55.59 E-value=25 Score=26.18 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQL 127 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL 127 (268)
.||..|+.+..+|..+..+|
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554333
No 143
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.44 E-value=27 Score=27.66 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQ 125 (268)
Q Consensus 110 leeLE~QV~qLraeN~ 125 (268)
+..||.++.++|.+-.
T Consensus 84 i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 84 LAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH
Confidence 4444444444444433
No 144
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=55.41 E-value=18 Score=26.92 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
.|...+.+||..+.+-..++++|...|
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677666655555555554444
No 145
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=55.36 E-value=38 Score=24.13 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024384 135 AALEAEVARLKCLLVDIR 152 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr 152 (268)
..|++++..|+.++..|+
T Consensus 40 ~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 40 EALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 146
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.08 E-value=18 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQ 134 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~~ 134 (268)
=.++.-..|.+|+.|+.+..+|..+|...
T Consensus 9 ~~~~~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 9 LLERCLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34566677888999999999998888653
No 147
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=54.69 E-value=51 Score=25.98 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 99 VRKYREKKKARTASLEDEVVRLRAV 123 (268)
Q Consensus 99 ARRSR~RKQahleeLE~QV~qLrae 123 (268)
+...+.-=+..+++|+.++.+|...
T Consensus 45 Vd~t~~eL~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 45 VDMTQKHLEEEIARLSKEIDQLEKM 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555555554443
No 148
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=52.95 E-value=30 Score=30.69 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=40.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKK-KARTASLEDEVVRLR-AVNQQLLKRLQG-QAALEAEVARLKCLLVDI 151 (268)
Q Consensus 97 ESARRSR~RK-QahleeLE~QV~qLr-aeN~qL~~rL~~-~a~LEaEn~~LRaqL~el 151 (268)
|.-.|.|+-| -+..+++|.+++.|. ++.+.|..+++. ..+||.|++.-|.+|++.
T Consensus 31 e~~hr~k~~~VmkEW~eae~q~k~l~kadkk~~~~rFQ~~v~aLE~E~~~ErqqL~et 88 (211)
T 3umh_A 31 EAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVET 88 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5555555444 456788888887664 456677777774 778999999999999874
No 149
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=52.63 E-value=63 Score=23.98 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLL 128 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~ 128 (268)
+.++...+..|.++-+++.
T Consensus 28 ~~~~q~~i~~lE~eL~~~r 46 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMK 46 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444443333333
No 150
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=52.59 E-value=38 Score=26.51 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQG----Q----AALEAEVARLKCLLVDI 151 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~----~----a~LEaEn~~LRaqL~el 151 (268)
++.|.+|.+--+|-+++...|-+ | ..-|.|+.+||.+|...
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35555555555555555555421 2 23578899999887643
No 151
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=52.52 E-value=38 Score=35.60 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL 131 (268)
+++|+.++..|+.+...+...+
T Consensus 880 l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 880 LKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 152
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=52.33 E-value=8.2 Score=35.80 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
..|..||.+|..++++.+.|...| ..+++++..|+.++..|..++.
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l---~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIY---NSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 345666777777777776666665 3456777777777777766544
No 153
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=52.27 E-value=19 Score=23.34 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~ 132 (268)
..||++|..|.+--+.|.+|+.
T Consensus 2 srlee~~r~l~~ivq~lq~r~d 23 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLD 23 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3588889888888888888863
No 154
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=52.23 E-value=52 Score=24.30 Aligned_cols=37 Identities=32% Similarity=0.329 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQ----GQAALEAEVARLKC 146 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~----~~a~LEaEn~~LRa 146 (268)
+.--|++|.||-+.|..|-.+|. ....|..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 55567888888888888877664 23456677777763
No 155
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=52.21 E-value=76 Score=24.15 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr 152 (268)
.+.+.|+.+++.+...+.++...+.. ...|+.++..+...|.++.
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333321 2334444444444444433
No 156
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=51.79 E-value=43 Score=33.14 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~r 130 (268)
++++.++-+.+++||..+.+|
T Consensus 36 ~ae~~a~n~~i~aeNeaikkr 56 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKR 56 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHH
Confidence 555555555566666666555
No 157
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=51.73 E-value=24 Score=22.84 Aligned_cols=27 Identities=37% Similarity=0.357 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 116 EVVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (268)
Q Consensus 116 QV~qLraeN~qL~~rL~~~a~LEaEn~~LR 145 (268)
+|++|.++-.|.... +-.||.|+++|.
T Consensus 2 evaqlekevaqaeae---nyqleqevaqle 28 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAE---NYQLEQEVAQLE 28 (33)
T ss_dssp CHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---HhHHHHHHHHHH
Confidence 456666554433221 334455554443
No 158
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=51.67 E-value=8.3 Score=26.84 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQL 127 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL 127 (268)
..++++||.+|+.|+...++|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888766544
No 159
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=51.58 E-value=11 Score=33.52 Aligned_cols=48 Identities=29% Similarity=0.292 Sum_probs=27.1
Q ss_pred HHHhhccCccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 85 EKKTKKRPLGN-------REAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 85 d~KK~KRmlSN-------RESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+-+|-||.||= ||...--=....++.+++.+++++|+++|+.+..+|+
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie 172 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLE 172 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666553 3333333334445556666666667777666666654
No 160
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=51.17 E-value=39 Score=27.93 Aligned_cols=35 Identities=23% Similarity=0.102 Sum_probs=19.9
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAV 123 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQahleeLE~QV~qLrae 123 (268)
++.+|..-|----|+-++++| .++|+.|..+..++
T Consensus 7 ~k~~mt~~Rk~~Lk~lll~kA-~e~l~kE~e~k~ee 41 (133)
T 1j1d_C 7 KKSKISASRKLQLKTLLLQIA-KQELEREAEERRGE 41 (133)
T ss_dssp SSCSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 445566666666666666655 34555555554444
No 161
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=51.14 E-value=29 Score=26.86 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLK 129 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~ 129 (268)
+=.+.++.+++++..|+.+|.+|..
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777777766643
No 162
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=51.12 E-value=58 Score=25.03 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~r 130 (268)
.|..++..|..+...|...
T Consensus 22 ~L~~eL~~lEke~~~l~~e 40 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAEN 40 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3333333333333333333
No 163
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=51.11 E-value=13 Score=29.44 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 024384 138 EAEVARLKCLLVD 150 (268)
Q Consensus 138 EaEn~~LRaqL~e 150 (268)
...+..|+.+|..
T Consensus 22 ~~~~~~l~~~l~~ 34 (182)
T 3kqg_A 22 NTKIRALQGSLEN 34 (182)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 164
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=51.05 E-value=72 Score=25.67 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQG-QAALEAEVARLKCLLVD 150 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~-~a~LEaEn~~LRaqL~e 150 (268)
..|+.|-.+|..|+.+...|..+-+. ...|+..+..|.++|.+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666555555444332 22333344444444333
No 165
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=50.98 E-value=64 Score=26.30 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=35.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024384 97 EAVRK-YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 97 ESARR-SR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl 155 (268)
+...+ .=.+|++=..++|.+|++++..-..+++.+ |+|..+-+..+..+..+|
T Consensus 49 d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~------ese~~~kkK~le~~~~kV 102 (115)
T 3vem_A 49 ENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEV------EAEHNTRTTKIEKDKNLV 102 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 33443 345566666899999999999988887775 555555555555555544
No 166
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=50.84 E-value=74 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~r 130 (268)
++.+.++.+++.|+........|
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~R 92 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETR 92 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 167
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=50.76 E-value=66 Score=28.63 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 116 EVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (268)
Q Consensus 116 QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaq 147 (268)
|-.+|..+..+|...| +.|+.||..||..
T Consensus 116 EN~~Lh~~ie~l~eEi---~~LkeEn~eLkeL 144 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEI---ARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3344444444443333 4455555555543
No 168
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=50.29 E-value=23 Score=30.74 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 95 NREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 95 NRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~ 133 (268)
-.|+-|-.=..=-.++.+|.+++.+|+.+|+.|....++
T Consensus 139 p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 139 PAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667788999999999999999999887653
No 169
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=49.43 E-value=28 Score=26.11 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
...++.+...+..|.++..++...+.
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665553
No 170
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=48.96 E-value=60 Score=34.18 Aligned_cols=13 Identities=23% Similarity=0.255 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLR 121 (268)
Q Consensus 109 hleeLE~QV~qLr 121 (268)
+++.|+.++..|+
T Consensus 886 ~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 886 KHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 171
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=48.89 E-value=1.1e+02 Score=24.85 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 95 NREAVRKYREKKKARTASLEDEVVRLRAVN 124 (268)
Q Consensus 95 NRESARRSR~RKQahleeLE~QV~qLraeN 124 (268)
|=.+|-..=..|+..+++|..++.++++..
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677779999999999998877743
No 172
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=48.76 E-value=51 Score=25.60 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 115 ~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+|...|+.++.+|...+ ..|..|+++++..+..+..+++
T Consensus 48 ~q~~~LE~e~~~L~~e~---~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQV---EQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665554 4456666666666666665554
No 173
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=48.39 E-value=64 Score=24.90 Aligned_cols=40 Identities=28% Similarity=0.209 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
+.+.+|.-.|..|..|..|..++|. +-.+|++.|+.+|..
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLK---sTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLK---ATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHh
Confidence 3445555555555555556555553 334677777766654
No 174
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=48.27 E-value=40 Score=21.84 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 117 VVRLRAVNQQLLKRLQGQAALEAEVARLK 145 (268)
Q Consensus 117 V~qLraeN~qL~~rL~~~a~LEaEn~~LR 145 (268)
++.|++|...|.+++ ++|.-|++.|+
T Consensus 4 iaalkqeiaalkkei---aalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEI---AALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 334444444443333 34444444444
No 175
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=48.27 E-value=62 Score=22.52 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
|-|-||=.|-++.+++||+++..-+..+..+...|
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44556666666666666666555555444444433
No 176
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=47.63 E-value=33 Score=22.59 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+.-..|-.+.++|+..+++|+++|.
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe 31 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLE 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677888999999999999985
No 177
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=47.39 E-value=25 Score=24.73 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 024384 135 AALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~r 154 (268)
..|+.+|..|+.++..|+.-
T Consensus 32 ~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 32 KTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 178
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.78 E-value=44 Score=33.54 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAV 123 (268)
Q Consensus 112 eLE~QV~qLrae 123 (268)
+|+.++..|+.+
T Consensus 114 ELRRrIqyLKek 125 (562)
T 3ghg_A 114 DLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 179
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.58 E-value=75 Score=29.01 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024384 135 AALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl~ 156 (268)
..||+|+..|.++|.+++..|+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777766655
No 180
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.44 E-value=71 Score=22.19 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024384 134 QAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~r 154 (268)
+..|.+++..|+.++..|+..
T Consensus 38 n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 38 NGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566555555544
No 181
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.29 E-value=52 Score=27.78 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~r 154 (268)
++..|+.+++....+...|..+|.. -...|.+...+...|.+|..-
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas 94 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 94 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555542 122334445555555555443
No 182
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=46.13 E-value=40 Score=25.58 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLL 128 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~ 128 (268)
-|+.|+..|.+|+..+..++
T Consensus 20 ~i~~i~~~v~~l~~~~~~~L 39 (127)
T 1ez3_A 20 FIDKIAENVEEVKRKHSAIL 39 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 183
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=46.13 E-value=44 Score=29.74 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLK 129 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~ 129 (268)
.+.++.|+++++.|+.+|.+|..
T Consensus 121 h~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 121 HKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666543
No 184
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=45.13 E-value=30 Score=24.25 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL 131 (268)
|+++...+..|..+|..|..++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~ 50 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKV 50 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555554444443
No 185
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=45.11 E-value=78 Score=30.80 Aligned_cols=29 Identities=10% Similarity=-0.087 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 101 KYREKKKARTASLEDEVVRLRAVNQQLLK 129 (268)
Q Consensus 101 RSR~RKQahleeLE~QV~qLraeN~qL~~ 129 (268)
.-|+.-+..+++|.++.+.+.++..++.+
T Consensus 44 ~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 44 KKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555567777777777777777666554
No 186
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=44.84 E-value=37 Score=26.15 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhh
Q 024384 117 VVRLRAVNQQLLKRLQGQAALEAEVARL--KCLLVDIRGRI 155 (268)
Q Consensus 117 V~qLraeN~qL~~rL~~~a~LEaEn~~L--RaqL~elr~rl 155 (268)
+..|+.+++++.+.......||..|..| |-|-.++..++
T Consensus 41 I~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 41 IRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4455666666666666667788888776 44444445543
No 187
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=44.74 E-value=89 Score=23.86 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQL 127 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL 127 (268)
.+.++.+.++++.|+.+|..|
T Consensus 40 h~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 40 HKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444
No 188
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=44.71 E-value=79 Score=22.24 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024384 134 QAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~r 154 (268)
+..|..++..|+.++..|...
T Consensus 39 n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 39 KSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 189
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.71 E-value=83 Score=22.44 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024384 135 AALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl 155 (268)
..|+.||..|+.++..|+..+
T Consensus 40 ~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 40 EELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776654
No 190
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.63 E-value=1.2e+02 Score=29.53 Aligned_cols=72 Identities=8% Similarity=0.068 Sum_probs=34.4
Q ss_pred HHHhhccCcccHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q 024384 85 EKKTKKRPLGNREAVR--------KYREKKKARTASLEDEVVRLRAVNQQLLKRLQG---------QAALEAEVARLKCL 147 (268)
Q Consensus 85 d~KK~KRmlSNRESAR--------RSR~RKQahleeLE~QV~qLraeN~qL~~rL~~---------~a~LEaEn~~LRaq 147 (268)
+++.+=..++|..+.- .+=..+|..+.+++..|.++..+.+++...|+. ...|+..+..|+.+
T Consensus 104 eLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~k 183 (464)
T 1m1j_B 104 DLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKK 183 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 3444444556655542 123344455666666666655555444444432 22344444555555
Q ss_pred HHHHHhhhh
Q 024384 148 LVDIRGRIE 156 (268)
Q Consensus 148 L~elr~rl~ 156 (268)
+..|...|.
T Consensus 184 i~~l~~~~~ 192 (464)
T 1m1j_B 184 IQKLENAIA 192 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 191
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.47 E-value=28 Score=23.55 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLL 128 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~ 128 (268)
-+.++..|+.++..|+.+..||.
T Consensus 13 tkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777764
No 192
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=43.60 E-value=40 Score=26.11 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024384 123 VNQQLLKRLQGQAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 123 eN~qL~~rL~~~a~LEaEn~~LRaqL~elr~r 154 (268)
+|..|.++| ..|+.|++.||..+.+++.-
T Consensus 47 EN~~Lh~~i---e~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 47 ENEKLHKEI---EQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455555554 34666777777666666553
No 193
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=43.40 E-value=38 Score=21.65 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL 131 (268)
++|.+-++-|.++|.||..++
T Consensus 2 dqlnallasleaenkqlkakv 22 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKV 22 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666665554
No 194
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.30 E-value=1.2e+02 Score=30.54 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024384 119 RLRAVNQQLLKRLQG 133 (268)
Q Consensus 119 qLraeN~qL~~rL~~ 133 (268)
+||...+.|..+|+.
T Consensus 114 ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666653
No 195
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=43.19 E-value=36 Score=26.89 Aligned_cols=9 Identities=44% Similarity=0.530 Sum_probs=4.3
Q ss_pred hHHHHHhcc
Q 024384 28 SFFEDILKD 36 (268)
Q Consensus 28 ~~~d~~l~~ 36 (268)
|-+.-+|++
T Consensus 27 SkLT~lL~d 35 (117)
T 3kin_B 27 SKMTRILQD 35 (117)
T ss_dssp SHHHHHTHH
T ss_pred hHHHHHHHH
Confidence 344455554
No 196
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=43.17 E-value=56 Score=24.23 Aligned_cols=17 Identities=6% Similarity=0.132 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 024384 138 EAEVARLKCLLVDIRGR 154 (268)
Q Consensus 138 EaEn~~LRaqL~elr~r 154 (268)
+.|...|+.+...|+.+
T Consensus 60 ~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 60 VHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 197
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=43.03 E-value=1.2e+02 Score=23.90 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 136 ALEAEVARLKCLLVDI 151 (268)
Q Consensus 136 ~LEaEn~~LRaqL~el 151 (268)
.++.++..|+.++.++
T Consensus 108 kle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 108 KLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555444
No 198
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=42.92 E-value=49 Score=33.09 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=15.9
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREK---KKARTASLEDEVVRLRAVNQQL 127 (268)
Q Consensus 97 ESARRSR~R---KQahleeLE~QV~qLraeN~qL 127 (268)
||+.+.|.+ +-..+++|+.++.+|+.+...|
T Consensus 387 ea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~ 420 (854)
T 1qvr_A 387 EAAARLRMALESAPEEIDALERKKLQLEIEREAL 420 (854)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 444444443 3445666666665555554443
No 199
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=42.74 E-value=1e+02 Score=30.46 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhh
Q 024384 140 EVARLKCLLVDIRGR 154 (268)
Q Consensus 140 En~~LRaqL~elr~r 154 (268)
+...|..++.+|+.+
T Consensus 568 ~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 568 ESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444443
No 200
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=42.59 E-value=75 Score=25.66 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI 151 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el 151 (268)
....|..--++|-.+-.|+.+..++...+++.++.|-++.-.|
T Consensus 53 nTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ 95 (114)
T 2xzr_A 53 NTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHI 95 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3334444444555555555555555555666666555544433
No 201
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.27 E-value=73 Score=23.89 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 024384 142 ARLKCLLVDIRG 153 (268)
Q Consensus 142 ~~LRaqL~elr~ 153 (268)
..|+.++..|..
T Consensus 74 ~~l~~~i~~l~~ 85 (112)
T 1l8d_A 74 NNSKNTLAKLID 85 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 202
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.24 E-value=1.1e+02 Score=23.34 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024384 114 EDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 114 E~QV~qLraeN~qL~~r 130 (268)
+.++..|+.+=..|+..
T Consensus 10 ~~eL~~l~~eE~~L~~e 26 (96)
T 3q8t_A 10 QRELKELALEEERLIQE 26 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 203
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=42.13 E-value=54 Score=26.50 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
|++.++..+.|+.++++|+.+-..|.++++
T Consensus 133 ~~~~~~~~~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 133 RHSEKAAEEAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666777777777777777766654
No 204
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.02 E-value=1.1e+02 Score=24.08 Aligned_cols=54 Identities=24% Similarity=0.230 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRL----QGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL----~~~a~LEaEn~~LRaqL~e 150 (268)
|++|--..+=+..+...+.++.+|..+-..-..+- .....++.|+.-|-+.|.+
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555666555554332222111 1133455555555544443
No 205
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=41.91 E-value=76 Score=29.95 Aligned_cols=36 Identities=36% Similarity=0.402 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
..|++++..|+.+..+|.++++ .+.+|+..|+++|.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~---~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNE---QQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 6788888888888888877764 34455555555443
No 206
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=41.88 E-value=1.3e+02 Score=23.78 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL 131 (268)
++++.|.++|..|+..-......+
T Consensus 18 ~e~~~l~~~~~el~~~l~~~~~~~ 41 (125)
T 1joc_A 18 GEIEKLQTKVLELQRKLDNTTAAV 41 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777776655554444
No 207
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.28 E-value=57 Score=31.82 Aligned_cols=11 Identities=9% Similarity=-0.013 Sum_probs=4.3
Q ss_pred HHHHHHHHHhh
Q 024384 144 LKCLLVDIRGR 154 (268)
Q Consensus 144 LRaqL~elr~r 154 (268)
|++++.+|..+
T Consensus 76 l~~~~~~l~~~ 86 (485)
T 3qne_A 76 LIAEKEKLSNE 86 (485)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 208
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=41.10 E-value=75 Score=22.00 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
.++||.|...|...|..+..++..
T Consensus 22 laaleselqalekklaalksklqa 45 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777766666543
No 209
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.95 E-value=83 Score=21.37 Aligned_cols=47 Identities=2% Similarity=0.049 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl 155 (268)
.+..+++++.++..++.+-..+..++ ..+.+++...|..+..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~---~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKI---NEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544 233444444454444444433
No 210
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=40.83 E-value=88 Score=22.04 Aligned_cols=32 Identities=3% Similarity=-0.094 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLV 149 (268)
Q Consensus 115 ~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~ 149 (268)
++|.+|..+-++|-.++ ..|..++..||..+.
T Consensus 4 aki~~Lss~V~~L~~kV---dqLssdV~al~~~v~ 35 (52)
T 1jcd_A 4 AKADQASSDAQTANAKA---DQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34555555555554444 334445555554433
No 211
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=40.49 E-value=1.1e+02 Score=22.57 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024384 110 TASLEDEVVRLRAVNQQLLKR--LQG---------QAALEAEVARLKCLLVDIRGRIEGEIGSF 162 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~r--L~~---------~a~LEaEn~~LRaqL~elr~rl~~~igsf 162 (268)
..+|+.++.+|+.....|... -.+ +.........|+..|.+|...|......|
T Consensus 27 ~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~~y 90 (103)
T 4i0x_B 27 KEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHGAY 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555 321 34455667788888888888887655443
No 212
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=39.81 E-value=97 Score=28.28 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024384 134 QAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~ 153 (268)
++.||+++++-...+.++.+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~ 450 (471)
T 3mq9_A 431 MASLDAEKAQGQKKVEELEG 450 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566665543333444433
No 213
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=39.68 E-value=1.3e+02 Score=23.21 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 108 ARTASLEDEVVRLRAVN----QQLLKRLQ-----------GQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 108 ahleeLE~QV~qLraeN----~qL~~rL~-----------~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
+.|++||..|.-+-... +.|..-|+ ..+.|-++|..+|.+-..+|.++-+
T Consensus 26 ~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~~ 90 (93)
T 3t98_B 26 QQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLG 90 (93)
T ss_dssp HHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777665543210 23433333 2345667778888887777766543
No 214
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=39.63 E-value=1.6e+02 Score=28.39 Aligned_cols=67 Identities=9% Similarity=0.065 Sum_probs=40.3
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 87 KTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 87 KK~KRmlSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+++|.+..|-++|-.+=.+=...+..||..+.........|...+. .....+..|+..+..|..+..
T Consensus 70 ~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~---~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 70 PDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYN---SNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp TTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTSC
T ss_pred cccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 3456666677777666555555555566666665666655555543 234556777777777766654
No 215
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=39.34 E-value=1.5e+02 Score=25.47 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024384 135 AALEAEVARLKCLLV 149 (268)
Q Consensus 135 a~LEaEn~~LRaqL~ 149 (268)
..|+.|+..|.++|.
T Consensus 65 ~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 65 SQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554444
No 216
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=39.23 E-value=39 Score=31.77 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 024384 135 AALEAEVARLKCLLVDIRGRIEGEIGSFP 163 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl~~~igsfp 163 (268)
..|..++..|..++.++...+...+-.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 106 (425)
T 2dq3_A 78 KELKEEIDRLEEELRKVEEELKNTLLWIP 106 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44566666666666667777665544444
No 217
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=38.96 E-value=71 Score=27.68 Aligned_cols=35 Identities=23% Similarity=0.102 Sum_probs=20.2
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 88 TKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAV 123 (268)
Q Consensus 88 K~KRmlSNRESARRSR~RKQahleeLE~QV~qLrae 123 (268)
++.+|..-|-=--|+-++++| .++|+.|..+..++
T Consensus 7 kk~~mt~~Rk~~Lk~lll~kA-~e~L~~E~e~k~eE 41 (180)
T 1j1e_C 7 KKSKISASRKLQLKTLLLQIA-KQELEREAEERRGE 41 (180)
T ss_dssp CCCSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 445566666666666666655 35555555555444
No 218
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.77 E-value=1e+02 Score=29.95 Aligned_cols=20 Identities=10% Similarity=0.317 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024384 113 LEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 113 LE~QV~qLraeN~qL~~rL~ 132 (268)
|..++.+|+++..++-++|.
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~ 101 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVR 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555553
No 219
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=38.74 E-value=42 Score=23.45 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024384 133 GQAALEAEVARLKCLLVDIRGR 154 (268)
Q Consensus 133 ~~a~LEaEn~~LRaqL~elr~r 154 (268)
.+..|..||..|+.++..+..+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3555666677777666665544
No 220
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=38.72 E-value=1.4e+02 Score=23.49 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~ 132 (268)
.+|+.+...|..+...|...|+
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555545444443
No 221
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=38.58 E-value=18 Score=29.42 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+|.+.++.|+.|+++|+.+..+++++|=
T Consensus 12 ~~aa~L~~l~~ql~~l~~~l~~l~~~LP 39 (147)
T 2rjz_A 12 FQAANLEAYKAQMKEMEESFGALLRQLP 39 (147)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4467788999999999999988888873
No 222
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=37.62 E-value=30 Score=25.28 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 96 REAVRKYREKKKARTASLEDEV 117 (268)
Q Consensus 96 RESARRSR~RKQahleeLE~QV 117 (268)
-++-|+.|.+=...+++|..-|
T Consensus 17 n~~Er~RR~~in~~f~~Lr~lv 38 (80)
T 1hlo_A 17 NALERKRRDHIKDSFHSLRDSV 38 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHC
Confidence 3444555555455666665544
No 223
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.52 E-value=1.4e+02 Score=27.44 Aligned_cols=26 Identities=15% Similarity=0.005 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
++.++...++..+|+.+|+.+.+.+.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhh
Confidence 33344444444555555555554443
No 224
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.49 E-value=1.9e+02 Score=24.41 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+.++..|..|+.++.+-..+|+
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788889888888777666
No 225
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=37.37 E-value=85 Score=24.89 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024384 136 ALEAEVARLKCLLVDIRGRIEGEIGSF 162 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~rl~~~igsf 162 (268)
.||..+.+-.-++.+|+.||..- |-|
T Consensus 67 DlE~kv~kq~yEI~eL~~rV~dl-gKf 92 (107)
T 1ytz_T 67 DFAEQIKRKKYEIVTLRNRIDQA-QKH 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-CCC
T ss_pred hHHHHHHhhhhHHHHHHHHHHHh-cCc
Confidence 34444444445555566665544 443
No 226
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.83 E-value=94 Score=37.05 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 97 EAVRKYREKKKARTASLEDEVVRLRAVNQQL 127 (268)
Q Consensus 97 ESARRSR~RKQahleeLE~QV~qLraeN~qL 127 (268)
+.|...=..+++.+++|+++|++|+++-+++
T Consensus 2024 ~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 2024 NELKLKQDEIVATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556667777777777666654443
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.44 E-value=54 Score=31.01 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
.++..|+.+...|+.++..|..++ ..+..|+..++.++..++.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~---~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQ---RHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcC
Confidence 345566777777777766665553 3456677777777665543
No 228
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.26 E-value=1.1e+02 Score=21.44 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLL 148 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL 148 (268)
.|...--||...-+-|.+-+ +.|..|+++|..++
T Consensus 14 rlkkdnlqlerdeqnlekii---anlrdeiarlenev 47 (52)
T 3he5_B 14 RLKKDNLQLERDEQNLEKII---ANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhHhhHHHHH---HHHHHHHHHHHHHH
Confidence 33334444544444454443 44555666655443
No 229
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=36.12 E-value=74 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
+.+++..+.|+.++++|..+-+.|.+++
T Consensus 107 ~~~~~~~~~l~~~~~~l~~~l~~le~~~ 134 (139)
T 3eff_K 107 HSEKAAEEAYTRTTRALHERFDRLERML 134 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777777777766666554
No 230
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=35.85 E-value=51 Score=22.14 Aligned_cols=9 Identities=33% Similarity=0.505 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 024384 123 VNQQLLKRL 131 (268)
Q Consensus 123 eN~qL~~rL 131 (268)
||.+|-+.|
T Consensus 8 ENekLhk~i 16 (37)
T 1t6f_A 8 ENEKLHKEI 16 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 231
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=35.84 E-value=59 Score=23.36 Aligned_cols=26 Identities=38% Similarity=0.431 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 125 QQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 125 ~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
.||++++ ..|..||..||.+|.+-..
T Consensus 6 dQL~~QV---e~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 6 DQLLKQV---EALKMENSNLRQELEDNSN 31 (54)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHhhHHHHHHHhhHH
Confidence 3555554 6788888888888877544
No 232
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.75 E-value=1.8e+02 Score=27.28 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccc
Q 024384 137 LEAEVARLKCLLVDIRGRIEGEIGSFP 163 (268)
Q Consensus 137 LEaEn~~LRaqL~elr~rl~~~igsfp 163 (268)
|..++..|..++.++...+...+-.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 76 LGEEAKRLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444444455555555554443444
No 233
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=35.68 E-value=26 Score=30.99 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 101 KYREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD 150 (268)
Q Consensus 101 RSR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e 150 (268)
|+|+-|..-.+++-.+.+.+..+.++|...+ ..+++++..|+.++.+
T Consensus 134 ~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En---~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 134 HFREACRETYMEFLWQYKSSADKMQQLNAAH---QEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH---HHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 4566666666666666666666665555553 3455555555555443
No 234
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.65 E-value=1.5e+02 Score=22.86 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 024384 139 AEVARLKCLLVDIR 152 (268)
Q Consensus 139 aEn~~LRaqL~elr 152 (268)
.++.+|..++....
T Consensus 58 ~ei~~le~~i~rhk 71 (84)
T 1gmj_A 58 KEIERLQKEIERHK 71 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444443333333
No 235
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=35.58 E-value=73 Score=25.41 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLL 128 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~ 128 (268)
++++|++++++|+...+.|.
T Consensus 89 ~~~~l~~~i~~L~~~~~~L~ 108 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRLD 108 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333
No 236
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=35.35 E-value=1.1e+02 Score=21.39 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
+||...+++| ..|+.+...|..+|
T Consensus 6 rrr~e~ld~l----~~LEkqF~~LkEql 29 (49)
T 2xus_A 6 RRRSECVSEM----LDLEKQFSELKEKL 29 (49)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3455555443 34556666666665
No 237
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=35.22 E-value=2.1e+02 Score=26.62 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc
Q 024384 138 EAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 138 EaEn~~LRaqL~elr~rl~~~i 159 (268)
|.+...+|.++...+..|+..|
T Consensus 78 Ere~~~~Rd~~a~~k~~Le~~i 99 (302)
T 3ibp_A 78 EREAIVERDEVGARKNAVDEEI 99 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666555555443
No 238
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=35.20 E-value=1.4e+02 Score=25.87 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 103 REKKKARTASLEDEVVRLRAVNQQLLKRLQG 133 (268)
Q Consensus 103 R~RKQahleeLE~QV~qLraeN~qL~~rL~~ 133 (268)
-..-|++...|..++..|+.++.+|..++..
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888888888777764
No 239
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=35.05 E-value=1.7e+02 Score=25.99 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 024384 140 EVARLKCLL 148 (268)
Q Consensus 140 En~~LRaqL 148 (268)
.+..||..|
T Consensus 89 ~~eeLr~~L 97 (273)
T 3s84_A 89 NADSLQASL 97 (273)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 333333333
No 240
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.00 E-value=1.3e+02 Score=21.95 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 114 EDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 114 E~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
+....++..+...|.+++ ..||.++..+...|.....+|..
T Consensus 33 e~~~~~~E~ev~~L~kKi---q~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 33 EERSKQLEDELVALQKKL---KGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444443 45677777777777776666653
No 241
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=34.75 E-value=1.4e+02 Score=25.57 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
=+.+|++|.+.-.+|... |..+...+..||.+...||-.|..|+..-+..
T Consensus 101 LksRL~~l~~sk~~L~e~---L~~q~~~~relERemnsLKPeL~qL~K~rD~y 150 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQE---LRAQASDNREIDKRMNSLKPDLMQLRKIRDQY 150 (170)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345666666666666433 33333345566777777777777765554433
No 242
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=34.73 E-value=52 Score=25.81 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 024384 139 AEVARLK 145 (268)
Q Consensus 139 aEn~~LR 145 (268)
.++..|+
T Consensus 30 ~~l~~~~ 36 (182)
T 3kqg_A 30 GSLENMS 36 (182)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 243
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=34.15 E-value=1.5e+02 Score=25.97 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARL 144 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~L 144 (268)
..+||.+=++.|..++.-|+.+-..|...++.+.++-+++..+
T Consensus 13 i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~ 55 (190)
T 3thf_A 13 IKQKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAK 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3578888899999999999999999999998777666666444
No 244
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=33.87 E-value=1.5e+02 Score=22.44 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH-HHHHHHHHHHHHHHHHHHHHh
Q 024384 102 YREKKKARTASLEDEVVRLRAVNQQLL----------KRLQ-GQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 102 SR~RKQahleeLE~QV~qLraeN~qL~----------~rL~-~~a~LEaEn~~LRaqL~elr~ 153 (268)
-|+|=+..+..-.+++.-|+...+.|. .+|+ +.+.|+..+..|+....+|..
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666655554443 2332 355677777777777666654
No 245
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=33.58 E-value=2.2e+02 Score=25.31 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL 131 (268)
+.+..|+.++.+.++|++.+...|
T Consensus 178 ~kl~~l~~~L~~~~~e~~s~~~~~ 201 (228)
T 3q0x_A 178 GTCHDLSDDLSRTRDDRDSMVAQL 201 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888886665554
No 246
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=33.42 E-value=84 Score=29.14 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRL--QGQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL--~~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
.+.+|+.++.+|+.+....+..- ..-+.|..+...|+.++.++..++...
T Consensus 395 ~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 446 (468)
T 3pxg_A 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEK 446 (468)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888888887766554321 134567788888888888888887754
No 247
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=33.24 E-value=1.6e+02 Score=24.07 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 109 RTASLEDEVVRLRA-VNQQLLKRLQ------------GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 109 hleeLE~QV~qLra-eN~qL~~rL~------------~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
=++.|++++++|+. +...+.+++. +|.+-..+...+...+.+|..+|.
T Consensus 10 g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~ 70 (158)
T 2p4v_A 10 GYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCME 70 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888843 5666666663 133344555666666666776665
No 248
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.20 E-value=48 Score=26.52 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024384 136 ALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~rl~ 156 (268)
.|+++++.|+..+..|..+|.
T Consensus 106 ~l~~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 106 NVLQLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444443
No 249
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=32.17 E-value=1.4e+02 Score=26.61 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 117 VVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 117 V~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
...+++++.+|..+|+. ...+.+..+.-|.+++++|...+
T Consensus 173 ~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 173 LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444432 23445555555666666665544
No 250
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=31.91 E-value=1.4e+02 Score=26.11 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARL 144 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~L 144 (268)
++.|++++.+|+.+..+|+....++..+-..+.+|
T Consensus 74 ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l 108 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRL 108 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666655554444444443
No 251
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=31.79 E-value=55 Score=25.86 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+-+++||+-|.+|..-.--|..-|..+..=.+-+...+..|.....+|.
T Consensus 34 eal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~ 82 (100)
T 1vp7_A 34 TALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVK 82 (100)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999887777777776555444555666666776666655
No 252
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=31.28 E-value=1.3e+02 Score=28.32 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024384 136 ALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~rl~ 156 (268)
.|.++...|+.++.++...+.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~ 88 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALR 88 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544443
No 253
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=31.17 E-value=1.3e+02 Score=22.21 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 114 EDEVVRLRAVNQQLLKRLQ---------GQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 114 E~QV~qLraeN~qL~~rL~---------~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
-.+..+|+.|..+|...++ ..+.|.-.+..|..+|..+...|..+
T Consensus 5 ~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 5 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455556666666666654 24556666666666666666666544
No 254
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=31.06 E-value=1e+02 Score=24.39 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 024384 136 ALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
.||..+.+-.-++.+|+.||..-
T Consensus 67 DlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 67 DLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444555555566666666544
No 255
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=30.82 E-value=2e+02 Score=22.67 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 95 NREAVRKYREKKKARTASLEDEVVRLRAVN 124 (268)
Q Consensus 95 NRESARRSR~RKQahleeLE~QV~qLraeN 124 (268)
+-.+|-..=..||..+++|-+++.++++..
T Consensus 10 ~L~~aEeaL~~kq~~id~lke~~~q~~~~~ 39 (94)
T 3jsv_C 10 QLQQAEEALVAKQELIDKLKEEAEQHKIVM 39 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555566679999999999999888544
No 256
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=30.80 E-value=2.2e+02 Score=24.44 Aligned_cols=16 Identities=6% Similarity=0.200 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 024384 139 AEVARLKCLLVDIRGR 154 (268)
Q Consensus 139 aEn~~LRaqL~elr~r 154 (268)
+++..+++++..++..
T Consensus 128 a~l~~~~a~l~~a~a~ 143 (341)
T 3fpp_A 128 AQIGTIDAQIKRNQAS 143 (341)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 257
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=30.77 E-value=1.9e+02 Score=23.24 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL 131 (268)
.+|..++..+.++...|...+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w 36 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFI 36 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 258
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=30.67 E-value=1.4e+02 Score=27.21 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+++++|++++++|.++...|.++|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIE 271 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777788888887777766553
No 259
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.54 E-value=1.7e+02 Score=21.86 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARL 144 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~L 144 (268)
++|.+||.+-..|+..-+.|..+|.+ ...+.+|+.+|
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666642 33444444443
No 260
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=30.36 E-value=81 Score=26.09 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
|--|..||++|+.+-..+ --+|.|+++|+..+..|..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ig~L~~~l~ 52 (125)
T 4g2k_A 13 QGNMKQIEDKIEEILSKI----------YHIENEIARIKKLIGNLVSRLR 52 (125)
T ss_dssp ---CHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH----------HhhhHHHHHHHHHHHHHHHHHH
No 261
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.10 E-value=21 Score=29.73 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+++.|...++.+..+...|..+|.. -...|.+...+...|.+|..-|=
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF 84 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 84 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566666666666653 33455666777777777766543
No 262
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=29.98 E-value=1.3e+02 Score=24.17 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRG 153 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~ 153 (268)
+.+++|++||+.+...++.|.+-.+ +-....|.-+..|-|
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~------~ks~eFReav~~LlG 43 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQ------TKIQEFRKACYTLTG 43 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhC
Confidence 5678888888888888877766542 233344444444444
No 263
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=29.77 E-value=1.6e+02 Score=29.15 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 024384 113 LEDEVVRLRAVNQQ 126 (268)
Q Consensus 113 LE~QV~qLraeN~q 126 (268)
++++.+.+++.|.+
T Consensus 46 i~aeNeaikkrNa~ 59 (497)
T 3iox_A 46 LTAENTAIKKRNAD 59 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 264
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=29.72 E-value=2.1e+02 Score=28.73 Aligned_cols=91 Identities=21% Similarity=0.255 Sum_probs=0.0
Q ss_pred cccceeccccccCCCCCCCCCCCccccchHHHhhccCcccHH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 56 THTCFHVHTKIVAPTSEDKVSTDDTAESTEKKTKKRPLGNRE--AVRKYREK---KKARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 56 thtc~h~ht~~~~s~s~d~~~~~d~~e~~d~KK~KRmlSNRE--SARRSR~R---KQahleeLE~QV~qLraeN~qL~~r 130 (268)
||+|+.-.--|+.. -.++.+.|-.+. +++-|-| +=-|-|+| ++..+..++.-|..|++.-+++..+
T Consensus 315 ~~~~~~~~~~~~~~--~~~~~~~~ve~~-------Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e 385 (602)
T 1cii_A 315 SHSGLDYKRNILND--RNPVVTEDVEGD-------KKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNE 385 (602)
T ss_dssp TSCHHHHHHHTSCC--CCSCCSSCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhcC--CCCcchhhhhhH-------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHhhh
Q 024384 131 LQG----QAALEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 131 L~~----~a~LEaEn~~LRaqL~elr~rl 155 (268)
.+. ..+++.|-.-+|.++..+.+++
T Consensus 386 ~k~A~d~l~a~~kek~~~~n~~a~~~~Ki 414 (602)
T 1cii_A 386 QKHANDALNALLKEKENIRNQLSGINQKI 414 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHH
No 265
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=29.44 E-value=1.2e+02 Score=23.99 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhccc
Q 024384 105 KKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVD---IRGRIEGEIGS 161 (268)
Q Consensus 105 RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~e---lr~rl~~~igs 161 (268)
.||..+++|-+++.+++....++ ..|.+.+.+-+..... -|.++.++...
T Consensus 35 ~KQ~~ideLKe~i~q~~~~~E~i-------~vL~aQ~~iY~~DF~aERaaREk~~~EKe~ 87 (96)
T 3fx0_A 35 AKQEVIDKLKEEAEQHKIVMETV-------PVLKAQADIYKADFQAERQAREKLAEKKEL 87 (96)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 38888888888888888664333 3455555555544332 45666666543
No 266
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.43 E-value=1.7e+02 Score=34.88 Aligned_cols=10 Identities=20% Similarity=0.364 Sum_probs=5.9
Q ss_pred ccceeccccc
Q 024384 57 HTCFHVHTKI 66 (268)
Q Consensus 57 htc~h~ht~~ 66 (268)
..|.++|+.+
T Consensus 1866 ~~~~~iH~sv 1875 (3245)
T 3vkg_A 1866 SSLVYIHQTI 1875 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566777543
No 267
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=29.32 E-value=1.9e+02 Score=21.95 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
++|.+||.+-..|+..-+.|..+|.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455555555555555555555553
No 268
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=29.26 E-value=2.3e+02 Score=22.99 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRA-VNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLra-eN~qL~~rL~~------------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+=++.|++|+++|+. +...+.+++.. |.+-..+...+-..+.+|..+|.
T Consensus 9 ~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~ 70 (158)
T 1grj_A 9 RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLS 70 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888877 56666666642 22333344444455666666666
No 269
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=29.21 E-value=64 Score=24.59 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL 131 (268)
+++|.+|+.++.+|+..-.+|...+
T Consensus 3 ~~~l~~l~~~~~~l~~~l~~l~~~~ 27 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKLELTNKLH 27 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3568888888888888888777765
No 270
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=29.17 E-value=21 Score=28.24 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRA 122 (268)
Q Consensus 108 ahleeLE~QV~qLra 122 (268)
..+.-|+.||.-.+.
T Consensus 40 E~i~vLk~Qv~IY~~ 54 (94)
T 3jsv_C 40 ETVPVLKAQADIYKA 54 (94)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666654443
No 271
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=29.04 E-value=2.2e+02 Score=22.82 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~ 132 (268)
.++|+.++..|+..|+.|..++.
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lk 74 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLK 74 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888775
No 272
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=28.77 E-value=1.5e+02 Score=20.82 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024384 134 QAALEAEVARLKCLLVDIRGRIEGEIGSF 162 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~~~igsf 162 (268)
+.........|+..|.+|...|......|
T Consensus 54 ~~~w~~~~~~~~~~L~~i~~~l~~~~~~y 82 (94)
T 3fav_B 54 QQKWDATATELNNALQNLARTISEAGQAM 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788888888888887655443
No 273
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=28.72 E-value=71 Score=25.99 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhhhcccc
Q 024384 143 RLKCLLVDIRGRIEGEIGSF 162 (268)
Q Consensus 143 ~LRaqL~elr~rl~~~igsf 162 (268)
.-+.+...|..++...+..|
T Consensus 123 ir~~q~~~L~~kf~~~m~~y 142 (180)
T 1s94_A 123 IRKTQYSTISRKFVEVMSDY 142 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777766655
No 274
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.58 E-value=1.6e+02 Score=22.72 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
=++.|.+|+.++.+......-|.+-+.
T Consensus 20 L~~Ki~el~~ei~ke~~~regl~Km~~ 46 (98)
T 2ke4_A 20 LQQQLEERSRELQKEVDQREALKKMKD 46 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999888888777766654
No 275
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.37 E-value=1.4e+02 Score=26.42 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 111 ASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCL 147 (268)
Q Consensus 111 eeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaq 147 (268)
+++++.+..+..+-..|.+++ ..|+++...|+.+
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~---~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKER---AALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhH
Confidence 333333434433333333333 3344444444444
No 276
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=28.34 E-value=74 Score=21.03 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~ 132 (268)
+++.-.++|..|+.+|..|..+|.
T Consensus 14 rlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 14 RFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788899999988877763
No 277
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=28.32 E-value=97 Score=28.05 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL 131 (268)
+.++.|+++...|++|.++|.+.+
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666554443
No 278
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=28.31 E-value=53 Score=28.76 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 94 GNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 94 SNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~r 130 (268)
.=.|+-|-.=-.=..++++|+++..+|++||+.|...
T Consensus 147 nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 147 NPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456665555556677778888888888888777654
No 279
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=28.29 E-value=15 Score=29.18 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=28.1
Q ss_pred hHHHhhccCcccHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 84 TEKKTKKRPLGNREAVRKYR----------EKKKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 84 ~d~KK~KRmlSNRESARRSR----------~RKQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
.-+|++|-.+.++-.+-+.= +=|-.=|+.-.+=+..|+.+++.|.........|+.++..|...+.+|.
T Consensus 33 ~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 33 LIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELE 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667776677766665442 1144444444555566666666666655556677777877776665543
No 280
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.29 E-value=0.81 Score=36.09 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=19.4
Q ss_pred HHHhhccCcccHHHHHHHHHHHH
Q 024384 85 EKKTKKRPLGNREAVRKYREKKK 107 (268)
Q Consensus 85 d~KK~KRmlSNRESARRSR~RKQ 107 (268)
-.|..||...||.||++.|.||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 35678899999999999998874
No 281
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=28.28 E-value=1.1e+02 Score=23.43 Aligned_cols=17 Identities=41% Similarity=0.360 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024384 114 EDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 114 E~QV~qLraeN~qL~~r 130 (268)
-.+|..|-.||.+|+..
T Consensus 8 gkevEnLi~EN~eLl~T 24 (77)
T 2w83_C 8 GREVENLILENTQLLET 24 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34566666666666544
No 282
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.21 E-value=1.2e+02 Score=27.96 Aligned_cols=13 Identities=38% Similarity=0.212 Sum_probs=6.6
Q ss_pred ccCCCCCCCCccc
Q 024384 212 LNGQGFSGCEFEN 224 (268)
Q Consensus 212 ~~gq~~~~c~f~~ 224 (268)
.+|+.|++=+-+|
T Consensus 227 h~g~~FST~DrDn 239 (323)
T 1lwu_C 227 HLGMLFSTPERDN 239 (323)
T ss_dssp CTTCCCBBTTBCC
T ss_pred cCCCeeeccCcCC
Confidence 4556665444444
No 283
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.10 E-value=1.7e+02 Score=22.35 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 115 DEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 115 ~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr 152 (268)
.+-.+|..+..++...| ..|+.||..|+..+...+
T Consensus 34 ~EN~~Lh~~ie~~~eEi---~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEI---ARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34455555555554444 567777777776555543
No 284
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=27.76 E-value=2e+02 Score=21.91 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAV 123 (268)
Q Consensus 109 hleeLE~QV~qLrae 123 (268)
.++.|..|-.+|...
T Consensus 10 evEnLi~EN~eLl~T 24 (77)
T 2w83_C 10 EVENLILENTQLLET 24 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666543
No 285
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=27.50 E-value=1.4e+02 Score=26.87 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
+++++|+.+..|.....++.+.. ...|..+..|...|.+|-+++..
T Consensus 7 Rvd~~EErIs~le~rleei~q~e---q~~ekrik~ne~sL~dL~d~iRr 52 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKREG---KFREKRIKRNEQSLQEIWDYVKR 52 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666777776666666665443 34566677777888888777764
No 286
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.42 E-value=1.5e+02 Score=22.87 Aligned_cols=23 Identities=4% Similarity=0.125 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~ 132 (268)
+.+|.++..+|+.+-+.|..+++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~ 25 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQME 25 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555543
No 287
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.16 E-value=2.1e+02 Score=25.03 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
.++.+++|.+++.+|+++-.-+++|..
T Consensus 71 l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 71 LEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666654
No 288
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=26.87 E-value=1.7e+02 Score=25.49 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=3.8
Q ss_pred CCCCCCCc
Q 024384 72 EDKVSTDD 79 (268)
Q Consensus 72 ~d~~~~~d 79 (268)
.|.+..++
T Consensus 51 G~~V~~Gq 58 (369)
T 4dk0_A 51 GQQVKKGD 58 (369)
T ss_dssp TSCCCSSC
T ss_pred CCEECCCC
Confidence 45554444
No 289
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=26.83 E-value=1.3e+02 Score=21.62 Aligned_cols=27 Identities=11% Similarity=0.104 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccc
Q 024384 135 AALEAEVARLKCLLVDIRGRIEGEIGS 161 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl~~~igs 161 (268)
.........|+..|..|...|......
T Consensus 56 ~~W~~~~~~l~~~L~~i~~~l~~a~~~ 82 (96)
T 3h6p_C 56 TQWNQALEDLVRAYQSMSGTHESNTMA 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677788888887777654433
No 290
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.79 E-value=37 Score=32.26 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~r 130 (268)
...+||.+++.++.+...|.+.
T Consensus 66 ~~~~~e~~~~~~~~~~~~l~~~ 87 (437)
T 4b4t_L 66 EHRRYDDQLKQRRQNIRDLEKL 87 (437)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655544433
No 291
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=26.78 E-value=1.6e+02 Score=20.50 Aligned_cols=49 Identities=27% Similarity=0.257 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQGQ----AALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~~~----a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
+.++...+..|.++.+++...+..+ ..|-.=-..|-.+++.+|.-++|+
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEgE 54 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGE 54 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 4567788888888888877776432 222222223344444455555543
No 292
>3duz_A GP67, major envelope glycoprotein; fusion protein, coiled-coil, fusion peptide, trimer, viral, lipoprotein; 2.95A {Autographa californica nuclearpolyhedrosis virus}
Probab=26.74 E-value=3.4e+02 Score=26.72 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDI---RGRIE 156 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~el---r~rl~ 156 (268)
-+-+++|..-++.|.=||++|...+ +.|++.+..|+..+.++ .++|+
T Consensus 276 aAs~~Dl~~I~~~lm~e~~~lr~Nl---~~L~~~~n~l~~~l~~vI~SVaKID 325 (487)
T 3duz_A 276 TATKGDLMHIQEELMYENDLLKMNI---ELMHAHINKLNNMLHDLIVSVAKVD 325 (487)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4668999999999999999998886 66778888887777765 44555
No 293
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=26.65 E-value=1.1e+02 Score=27.56 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=13.9
Q ss_pred HhhccCcccHHHH-HHHHHHHHHHH
Q 024384 87 KTKKRPLGNREAV-RKYREKKKART 110 (268)
Q Consensus 87 KK~KRmlSNRESA-RRSR~RKQahl 110 (268)
|-.=+-++|||+. +.+|.||+.=.
T Consensus 93 R~~LK~IR~~E~svqp~R~~R~~l~ 117 (234)
T 3plt_A 93 RVTLKSIRNIEASVQPSRDRKEKIT 117 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344567788765 55666655433
No 294
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=26.49 E-value=2.3e+02 Score=23.09 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQ-----GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~-----~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
=|--|+.+||.+..++.+.-. -....|.|++.+|.+-..+-.-++
T Consensus 36 PL~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 36 PFLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777766665432 244567777777766555443333
No 295
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=26.41 E-value=2e+02 Score=21.42 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024384 134 QAALEAEVARLKCLLVDIR 152 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr 152 (268)
+..|..|...|-.++.++.
T Consensus 44 ~~~l~~ek~~L~~ql~eaE 62 (89)
T 3bas_A 44 NVTLLEQKNDLFGSMKQLE 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3455555555555544433
No 296
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.30 E-value=1.3e+02 Score=28.68 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 114 EDEVVRLRAVNQQLLKRLQG-------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 114 E~QV~qLraeN~qL~~rL~~-------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
..++.+|+++...+-++|.. ...|.++...|+.++.++...+.
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVE 93 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555542 12455666666666666555444
No 297
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=26.11 E-value=1.1e+02 Score=24.32 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024384 135 AALEAEVARLKCLLVDI 151 (268)
Q Consensus 135 a~LEaEn~~LRaqL~el 151 (268)
..++.|+..|+.++...
T Consensus 42 k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 42 KDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 298
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=25.96 E-value=84 Score=27.88 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=23.6
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 91 RPLGNREAVRKYREKKKARTASLEDEVVRLRAVN 124 (268)
Q Consensus 91 RmlSNRESARRSR~RKQahleeLE~QV~qLraeN 124 (268)
|...-=|+.|+-|++.+++|+++.++-+..+++.
T Consensus 94 ~leeEPEsIRkWREEq~kRLeekDa~sekkk~E~ 127 (205)
T 3lvh_D 94 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEW 127 (205)
T ss_dssp TTTBSTTHHHHHHHHHTTTSTHHHHHHHHHHHHH
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567888888888888887766665555544
No 299
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.75 E-value=1.5e+02 Score=22.03 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 024384 137 LEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 137 LEaEn~~LRaqL~elr~rl 155 (268)
++.++..|..++..+...+
T Consensus 82 ie~~i~~le~~~~~l~~~l 100 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKL 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555554444433
No 300
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=25.72 E-value=92 Score=22.45 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024384 136 ALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 136 ~LEaEn~~LRaqL~elr~rl~ 156 (268)
.|+.+.+.|...+..|...+.
T Consensus 50 ~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 50 EVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555444444444443
No 301
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=25.48 E-value=1.2e+02 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=26.1
Q ss_pred cCcccHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 91 RPLGNREA--------VRKYREKKKARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 91 RmlSNRES--------ARRSR~RKQahleeLE~QV~qLraeN~qL~~rL 131 (268)
+...||.- |-|+-.+.|+.++.||+++...+.++..+.+.|
T Consensus 117 k~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 117 EKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566655 556666777777777777777766666665554
No 302
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.38 E-value=1.4e+02 Score=24.92 Aligned_cols=8 Identities=13% Similarity=0.032 Sum_probs=3.3
Q ss_pred hccCcccH
Q 024384 89 KKRPLGNR 96 (268)
Q Consensus 89 ~KRmlSNR 96 (268)
.|+.+.++
T Consensus 69 i~~~~~~~ 76 (278)
T 1r8e_A 69 MKKAQDLE 76 (278)
T ss_dssp HHHHTTSC
T ss_pred HHHHHHhC
Confidence 34444443
No 303
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=24.94 E-value=1.8e+02 Score=22.77 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 135 AALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
..|.+|+..|+.+|..-+...+..
T Consensus 59 DKl~~ele~l~~~l~~~k~~F~~~ 82 (93)
T 3sjb_C 59 DSLDKEINNLKDEIQSENKAFQAH 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444433
No 304
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.81 E-value=2.7e+02 Score=23.58 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 110 TASLEDEVVRLRAVNQQLLKRLQ------------------GQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 110 leeLE~QV~qLraeN~qL~~rL~------------------~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
+++|+..|+-|..+-.+....|. .+.+-..|+.+||+.+..+...++
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~ 77 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE 77 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH
No 305
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=24.58 E-value=4.5e+02 Score=26.41 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=6.2
Q ss_pred cccc-CCCCCCC
Q 024384 12 EMLS-ANIGDFP 22 (268)
Q Consensus 12 ~~~~-~~~~~~~ 22 (268)
.||+ | +|.+|
T Consensus 218 gVysa~-vPG~p 228 (551)
T 2b5u_A 218 GVFTAS-IPGAP 228 (551)
T ss_dssp TCEEEC-CTTSC
T ss_pred ceEEec-cCCCC
Confidence 4677 6 66655
No 306
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=23.91 E-value=1.1e+02 Score=22.71 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 024384 137 LEAEVARLKCLLVDIRGRI 155 (268)
Q Consensus 137 LEaEn~~LRaqL~elr~rl 155 (268)
-++|+..||.+|..++.-+
T Consensus 37 kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 37 KEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4567777777766655433
No 307
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=23.83 E-value=2.8e+02 Score=22.23 Aligned_cols=12 Identities=25% Similarity=0.133 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 024384 116 EVVRLRAVNQQL 127 (268)
Q Consensus 116 QV~qLraeN~qL 127 (268)
+-..|+.+|.+|
T Consensus 30 eN~~Lk~e~e~l 41 (155)
T 2oto_A 30 ENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 308
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=23.47 E-value=46 Score=23.28 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 106 KKARTASLEDEVVRLRAVNQQL 127 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL 127 (268)
+..+++.|+++|.+|+....+|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888877655444
No 309
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.30 E-value=1.5e+02 Score=24.65 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 134 QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 134 ~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
.+.++..|..|+.++.+-...|+
T Consensus 98 ~~~~e~r~~~L~~ql~e~e~ll~ 120 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLREKDMLLD 120 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777776666655
No 310
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=23.29 E-value=3.3e+02 Score=22.77 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=46.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 93 LGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQ---------GQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 93 lSNRESARRSR~RKQahleeLE~QV~qLraeN~qL~~rL~---------~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
-+||.-.-.++.|=-...+.|-.+|..|+-....|.+-+- ....+..++..++..|..+...|..+
T Consensus 6 ~~~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~e 80 (141)
T 3okq_A 6 SSNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTE 80 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566666667766667777788888888777777766653 24566778888888888877776643
No 311
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.23 E-value=1.3e+02 Score=23.85 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024384 112 SLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL 131 (268)
+|.+.|.+|..++.+|.+++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~ 48 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEI 48 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666555
No 312
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.88 E-value=3.1e+02 Score=24.13 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~r 130 (268)
..=++++++|+.++..++++..++...
T Consensus 229 ~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 229 ARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666665555
No 313
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.59 E-value=30 Score=27.79 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhh
Q 024384 112 SLEDEVVRLRAVNQQLLKRLQGQAALEAEVARL---KCLLVDIRGRIE 156 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~L---RaqL~elr~rl~ 156 (268)
+++.++.+|....++|...+ ..|......| ..++.++..-++
T Consensus 6 ~~~~~l~ql~~~~qql~~~~---~~l~~~~~~L~~a~~~~~e~~~~l~ 50 (151)
T 2zdi_C 6 QNNKELEKLAYEYQVLQAQA---QILAQNLELLNLAKAEVQTVRETLE 50 (151)
T ss_dssp SSTTHHHHHHHHHHHHTTTT---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555444444443 2233444444 444444444333
No 314
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.52 E-value=2.4e+02 Score=20.88 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 135 AALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 135 a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
..|+.....|+.++.++...|..-.
T Consensus 87 ~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 87 NALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444
No 315
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=22.32 E-value=1.5e+02 Score=25.28 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 116 EVVRLRAVNQQLLKRL 131 (268)
Q Consensus 116 QV~qLraeN~qL~~rL 131 (268)
++.+|.++-.-+++|.
T Consensus 61 ~~lR~~Ae~eN~rkR~ 76 (197)
T 1dkg_A 61 GILRVKAEMENLRRRT 76 (197)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 316
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.26 E-value=2.7e+02 Score=21.38 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL 131 (268)
+.+..|+.++..|....++|...+
T Consensus 8 ~~~q~l~~~~~~l~~~~~~l~~~i 31 (133)
T 1fxk_C 8 AQLNIYQSQVELIQQQMEAVRATI 31 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555554444444
No 317
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.10 E-value=2.3e+02 Score=20.64 Aligned_cols=13 Identities=0% Similarity=0.038 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 024384 110 TASLEDEVVRLRA 122 (268)
Q Consensus 110 leeLE~QV~qLra 122 (268)
+..|..++..|+.
T Consensus 17 ~~~l~~q~~~l~~ 29 (107)
T 1fxk_A 17 AQAISVQKQTVEM 29 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 318
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.98 E-value=1.8e+02 Score=28.09 Aligned_cols=7 Identities=14% Similarity=0.458 Sum_probs=3.5
Q ss_pred CCcccce
Q 024384 54 SHTHTCF 60 (268)
Q Consensus 54 ~hthtc~ 60 (268)
.|..+|-
T Consensus 26 ~~~s~Ck 32 (390)
T 1deq_A 26 RQQSACK 32 (390)
T ss_pred hhccccC
Confidence 4555554
No 319
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=21.98 E-value=1.6e+02 Score=27.55 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024384 112 SLEDEVVRLRAVNQQLLKRL----QGQAALEAEVARLKCLLVDIRGRIEGE 158 (268)
Q Consensus 112 eLE~QV~qLraeN~qL~~rL----~~~a~LEaEn~~LRaqL~elr~rl~~~ 158 (268)
.|...|+.|+..-++|.+.| ..+..+|.+...||-.|..|+..-+..
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 34444444443333333333 345677888888888887776644443
No 320
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=21.90 E-value=1.2e+02 Score=23.03 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEI 159 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~~~i 159 (268)
||..+++|---|..||+.--.. ..-+..||.+...++....+|...+.-..
T Consensus 15 Kq~EI~rLnvlvgslR~KLiKY---telnKKLe~~~~~~q~s~~~l~k~~~d~~ 65 (74)
T 2q6q_A 15 KQNEIFELKKIAETLRSKLEKY---VDITKKLEDQNLNLQIKISDLEKKLSDAN 65 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhHHHHhhccccc
Confidence 4555555555555555432111 11145566777666666666666554433
No 321
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=21.74 E-value=3.3e+02 Score=22.31 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024384 102 YREKKKARTASLEDEVVR 119 (268)
Q Consensus 102 SR~RKQahleeLE~QV~q 119 (268)
-|.+=+++++++..++.-
T Consensus 83 Lr~~l~kdlee~r~~l~P 100 (185)
T 3r2p_A 83 LRQEMSKDLEEVKAKVQP 100 (185)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHH
Confidence 344444555555555433
No 322
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=21.43 E-value=2.7e+02 Score=21.15 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 104 EKKKARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 104 ~RKQahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
..|++.+.+.+..+.+.....+|+.-.++
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r 73 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELR 73 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444466666666666666666555554
No 323
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=21.40 E-value=3.2e+02 Score=21.96 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 109 RTASLEDEVVRLRAVNQQLLKRLQG------------QAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~rL~~------------~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
-++.|++++.+++.+...+.++++. +.+...+...|-..+.+|..+|..
T Consensus 11 g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 11 GYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777766666666666642 333444455555566666666663
No 324
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=21.36 E-value=20 Score=30.72 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~ 132 (268)
++.+++.+++++|+++.++|.++++
T Consensus 256 ~~~~~~~~~~~~l~~~~~~l~~~l~ 280 (285)
T 3rvy_A 256 SHEDNINNEIIKLREEIVELKELIK 280 (285)
T ss_dssp -------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456667777777777666665553
No 325
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=21.31 E-value=2.7e+02 Score=21.04 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 024384 124 NQQLLKRL 131 (268)
Q Consensus 124 N~qL~~rL 131 (268)
|.+|..+|
T Consensus 5 NKeL~~kl 12 (74)
T 2q6q_A 5 NKELNFKL 12 (74)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 44444443
No 326
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.17 E-value=4.3e+02 Score=25.10 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL 131 (268)
.+|+++..||..+..+-.+|++.|
T Consensus 41 ~~LE~~l~elsn~ts~v~~Lvk~i 64 (409)
T 1m1j_C 41 LEIEGLLQQATNSTGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555444
No 327
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=21.16 E-value=50 Score=30.63 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~~~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
-||...+++.+.|+.+- .+.+.+.+-|..+.+||+.|+.||..+.
T Consensus 6 ~~~~t~~eki~~ie~~~----~~~~k~k~Te~~~~~lk~kla~lr~el~ 50 (376)
T 4a9a_A 6 HHMSTTVEKIKAIEDEM----ARTQKNKATSFHLGQLKAKLAKLRRELL 50 (376)
T ss_dssp ---CHHHHHHHHHHHHH----HHSCCSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH----HhcchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 47778888888887663 3444445555555566666666655443
No 328
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=21.03 E-value=2.5e+02 Score=20.50 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 024384 118 VRLRAVNQQLLKRLQG------QAALEAEVARLKCLL 148 (268)
Q Consensus 118 ~qLraeN~qL~~rL~~------~a~LEaEn~~LRaqL 148 (268)
..|+....+|.++|.+ ...+|.|+..|...+
T Consensus 28 eelkkkweelkkkieelggggevkkveeevkkleeei 64 (67)
T 1lq7_A 28 EELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEI 64 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4567777777777762 556777777776554
No 329
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.80 E-value=2.6e+02 Score=24.18 Aligned_cols=22 Identities=5% Similarity=0.021 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 109 RTASLEDEVVRLRAVNQQLLKR 130 (268)
Q Consensus 109 hleeLE~QV~qLraeN~qL~~r 130 (268)
..+.|+.+..+|.++..+++..
T Consensus 147 e~~~l~~~~~~l~~qlE~~v~~ 168 (213)
T 1ik9_A 147 ENERLLRDWNDVQGRFEKAVSA 168 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544443
No 330
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=20.79 E-value=2.8e+02 Score=21.08 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024384 108 ARTASLEDEVVRLRAVNQQLLKRLQ--------GQAALEAEVARLKCLLVDIRGRIEG 157 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~rL~--------~~a~LEaEn~~LRaqL~elr~rl~~ 157 (268)
....+|+.-+..|+.....|.+.+. +-...+..++.|+.++..|+..++.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~~ 93 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFDR 93 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555555555555555555543 1234566677777777777766653
No 331
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=20.74 E-value=2.8e+02 Score=21.07 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024384 113 LEDEVVRLRAVNQQLL 128 (268)
Q Consensus 113 LE~QV~qLraeN~qL~ 128 (268)
+|.+|..|...+++|.
T Consensus 42 ~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 332
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.30 E-value=1.5e+02 Score=19.47 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024384 114 EDEVVRLRAVNQQLLKRL 131 (268)
Q Consensus 114 E~QV~qLraeN~qL~~rL 131 (268)
...+++|+.+|..|..++
T Consensus 13 qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 344555666665554443
No 333
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=20.29 E-value=4.3e+02 Score=24.11 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 024384 106 KKARTASLEDEVVRLRAVNQQLLKRLQGQ-AALEAEVARLKCLLVDIRGRIEGEIGSF 162 (268)
Q Consensus 106 KQahleeLE~QV~qLraeN~qL~~rL~~~-a~LEaEn~~LRaqL~elr~rl~~~igsf 162 (268)
-++.|+.|..++.+.+..-+.++..|... ..|+.....|+.....|...|.+..|..
T Consensus 121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I 178 (346)
T 2nrj_A 121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADV 178 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccH
Confidence 45668888888888888888888888753 3566666666666666666666555443
No 334
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=20.27 E-value=1.3e+02 Score=27.61 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 024384 101 KYREKKKARTASLEDEVVRLRAVNQQLLKRLQG----QAALEAEVARLKCL 147 (268)
Q Consensus 101 RSR~RKQahleeLE~QV~qLraeN~qL~~rL~~----~a~LEaEn~~LRaq 147 (268)
....---.++.+|..+|.+++.+-.|+.+++++ -..||.|+.|+|.+
T Consensus 209 ~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T 2yo3_A 209 EANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKL 259 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445667888888888888888888888764 34577888877653
No 335
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.25 E-value=92 Score=28.22 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024384 113 LEDEVVRLRAVNQQLLKRLQ 132 (268)
Q Consensus 113 LE~QV~qLraeN~qL~~rL~ 132 (268)
.+++++.|+++++.|.++++
T Consensus 183 ~~~eie~L~~~~~~L~eEi~ 202 (315)
T 2ve7_A 183 DAFKLESLEAKNRALNEQIA 202 (315)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777664
No 336
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=20.24 E-value=3.8e+02 Score=22.29 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhh
Q 024384 107 KARTASLEDEVVRLRAVNQQLLKRLQG--------------QAALEAEVARLKCLLVDIRGRIE 156 (268)
Q Consensus 107 QahleeLE~QV~qLraeN~qL~~rL~~--------------~a~LEaEn~~LRaqL~elr~rl~ 156 (268)
++.++.++.++.+++++.......++. ....+.++...++++..++..|.
T Consensus 59 ~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~ 122 (277)
T 2f1m_A 59 QATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVE 122 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 337
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.23 E-value=1e+02 Score=21.72 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024384 108 ARTASLEDEVVRLRAVNQQLLK 129 (268)
Q Consensus 108 ahleeLE~QV~qLraeN~qL~~ 129 (268)
.++++|+++|.+|+...++|..
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4677888888888766665543
Done!