BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024385
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 105/198 (53%), Gaps = 10/198 (5%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
R+ ++ GL SGKT+LF +L G ++ T TS+ D+ ++ + +G +
Sbjct: 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT---DSSAIYKVNNNRGN--SL 56
Query: 120 HLVDVPGHSRLRPKL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI 178
L+D+PGH LR +L D F A +VFVVD+ F +E+LY +L +S +K
Sbjct: 57 TLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSP 116
Query: 179 PVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQAFS 235
+LI CNK D A + + I++Q+EKE++ LR +RSA ++ T LG G+ F
Sbjct: 117 SLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFE 176
Query: 236 FSQCHNKVSVAEASGLTG 253
FSQ KV E S G
Sbjct: 177 FSQLPLKVEFLECSAKGG 194
>pdb|1NRJ|B Chain B, Signal Recognition Particle Receptor Beta-Subunit In
Complex With The Srx Domain From The Alpha-Subunit
Length = 218
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 26/216 (12%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVP 125
+I++AG SGKT L L S TV S EP + ++ G V LVD P
Sbjct: 14 SIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEP-----LSAADYDGSG----VTLVDFP 63
Query: 126 GHSRLRPKLDEFLPQAA----GIVFVVDALEFLPNCSAASEYLYDILT-NSTVVKKKIPV 180
GH +LR KL ++L A G++F+VD+ + +E+L DIL+ + + I +
Sbjct: 64 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 123
Query: 181 LICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS--------AVSEADVTNDFTLGI--P 230
LI CNK++ TA I+ +E EI K+ R ++E D + TL +
Sbjct: 124 LIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAEN-TLDVLQS 182
Query: 231 GQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 266
F F+ V E S +ISQ ++I E++
Sbjct: 183 TDGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 218
>pdb|2GED|A Chain A, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
pdb|2GED|B Chain B, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
Length = 193
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 15/153 (9%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVP 125
+I++AG SGKT L L S + TV S EP + ++ G V LVD P
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQEP-----LSAADYDGSG----VTLVDFP 99
Query: 126 GHSRLRPKLDEFLPQAA----GIVFVVDALEFLPNCSAASEYLYDILT-NSTVVKKKIPV 180
GH +LR KL ++L A G++F+VD+ + +E+L DIL+ + + I +
Sbjct: 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 159
Query: 181 LICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213
LI CNK++ TA I+ +E EI K+ R
Sbjct: 160 LIACNKSELFTARPPSKIKDALESEIQKVIERR 192
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 33 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTT-------- 83
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+L
Sbjct: 84 FDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVE-LNALMTDETI--SNVPIL 140
Query: 182 ICCNKTDKVTAHTKEFIRK 200
I NK D+ A ++E +R+
Sbjct: 141 ILGNKIDRTDAISEEKLRE 159
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK+ +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTT-------- 73
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+L
Sbjct: 74 FDLGGHIQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPIL 130
Query: 182 ICCNKTDKVTAHTKEFIRK 200
I NK D+ A ++E +R+
Sbjct: 131 ILGNKIDRPEAISEERLRE 149
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK+ +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 20 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTT-------- 70
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+L
Sbjct: 71 FDLGGHIQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPIL 127
Query: 182 ICCNKTDKVTAHTKEFIRK 200
I NK D+ A ++E +R+
Sbjct: 128 ILGNKIDRPEAISEERLRE 146
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK+ +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 14 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTT-------- 64
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ G + R +LP GIVF+VD + + E L ++T+ T+ +P+L
Sbjct: 65 FDLGGGIQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPIL 121
Query: 182 ICCNKTDKVTAHTKEFIRK 200
I NK D+ A ++E +R+
Sbjct: 122 ILGNKIDRPEAISEERLRE 140
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
K ++ GL +GKT L + L++ + +++P T+ SE G IK
Sbjct: 21 NKHGKLLFLGLDNAGKTTLLHMLKNDR-----LATLQP---TWHPTSEELAIGNIK-FTT 71
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ GH + R ++ P+ GIVF+VDA + P + D L N + K +P +
Sbjct: 72 FDLGGHIQARRLWKDYFPEVNGIVFLVDAAD--PERFDEARVELDALFNIAEL-KDVPFV 128
Query: 182 ICCNKTDKVTAHTKEFIRKQM 202
I NK D A ++ +R +
Sbjct: 129 ILGNKIDAPNAVSEAELRSAL 149
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
++ GL +GKT L + L++ + +++P T+ SE G IK D+ G
Sbjct: 4 LLFLGLDNAGKTTLLHMLKNDR-----LATLQP---TWHPTSEELAIGNIK-FTTFDLGG 54
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
H + R ++ P+ GIVF+VDA + P + D L N + K +P +I NK
Sbjct: 55 HIQARRLWKDYFPEVNGIVFLVDAAD--PERFDEARVELDALFNIAEL-KDVPFVILGNK 111
Query: 187 TDKVTAHTKEFIRKQM 202
D A ++ +R +
Sbjct: 112 IDAPNAVSEAELRSAL 127
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 57 QVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKI 116
+++ K I++ GL G+GKT + Y+L G V + +P T + E+ +
Sbjct: 11 KLWGSNKELRILILGLDGAGKTTILYRL-----QIGEVVTTKP---TIGFNVETLSYKNL 62
Query: 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKK 176
K +++ D+ G + +RP + A ++FVVD+ + S AS+ L+ +L + +
Sbjct: 63 K-LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD-KDRMSTASKELHLMLQEEEL--Q 118
Query: 177 KIPVLICCNKTDKVTAHTKEFIRKQM 202
+L+ NK D+ A + + K++
Sbjct: 119 DAALLVFANKQDQPGALSASEVSKEL 144
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNED---TFVLHSESTKKGKIKP 118
K+ + L GL SGKT T + S + NED T + KG +
Sbjct: 29 KEEMELTLVGLQYSGKT----------TFVNVIASGQFNEDMIPTVGFNMRKITKGNV-T 77
Query: 119 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI 178
+ L D+ G R R + + + IV++VDA + A+ L+++L + + I
Sbjct: 78 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD-QEKIEASKNELHNLLDKPQL--QGI 134
Query: 179 PVLICCNKTDKVTA-HTKEFIRK 200
PVL+ NK D A KE I K
Sbjct: 135 PVLVLGNKRDLPGALDEKELIEK 157
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK I++ GL +GKT + Y+L+ G VT++ T + E+ + I +
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIP----TIGFNVETVEYKNIS-FTV 213
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
DV G ++RP + G++FVVD+ + + A E L +L + + +L
Sbjct: 214 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDEL--RDAVLL 270
Query: 182 ICCNKTD 188
+ NK D
Sbjct: 271 VFANKQD 277
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK I++ GL +GKT + Y+L+ G + + P T + E+ + I +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNI-SFTV 65
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
DV G ++RP + G++FVVD+ + + A E L +L + + +L
Sbjct: 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDEL--RDAVLL 122
Query: 182 ICCNKTD 188
+ NK D
Sbjct: 123 VFANKQD 129
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK I++ GL +GKT + Y+L+ G + + P T + E+ + I +
Sbjct: 14 KKEMRILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNI-SFTV 64
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
DV G ++RP + G++FVVD+ + + A E L +L + + +L
Sbjct: 65 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDEL--RDAVLL 121
Query: 182 ICCNKTD 188
+ NK D
Sbjct: 122 VFANKQD 128
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+V+ GL SGKT + Q++ + +T+ T + E+ +KG++ + D+ G
Sbjct: 20 VVMCGLDNSGKTTIINQVKPAQSSSKHITA------TVGYNVETFEKGRV-AFTVFDMGG 72
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKK-----KIPVL 181
+ R + + ++FVVD+ + L C SE + +L + + ++ ++P L
Sbjct: 73 AKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSE-IQAMLKHEDIRRELPGGGRVPFL 131
Query: 182 ICCNKTDKVTAHT 194
NK D A T
Sbjct: 132 FFANKMDAAGAKT 144
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLV 122
K I++ GL +GKT + Y+L+ G +VT++ T + E+ +K ++
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVK-FNVW 61
Query: 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182
DV G ++RP + G++FVVD + A + L+ I+ + + + +LI
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILI 118
Query: 183 CCNKTD 188
NK D
Sbjct: 119 FANKQD 124
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK I++ GL +GKT + Y+L+ G + + P T + E+ + I +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNI-CFTV 65
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDA 150
DV G R+RP + G++FVVD+
Sbjct: 66 WDVGGQDRIRPLWKHYFQNTQGLIFVVDS 94
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLV 122
K I++ GL +GKT + Y+L+ G +VT++ T + E+ +K ++
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVK-FNVW 62
Query: 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182
DV G ++RP + G++FVVD + A + L+ I+ + + + +LI
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILI 119
Query: 183 CCNKTD 188
NK D
Sbjct: 120 FANKQD 125
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNED---TFVLHSESTKKGKIKP 118
K+ + L GL SGKT T + S + NED T + KG +
Sbjct: 20 KEEMELTLVGLQYSGKT----------TFVNVIASGQFNEDMIPTVGFNMRKITKGNV-T 68
Query: 119 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI 178
+ L D+ G R R + + + IV++VDA + A+ L+++L + + I
Sbjct: 69 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD-QEKIEASKNELHNLLDKPQL--QGI 125
Query: 179 PVLICCNKTDKVTA-HTKEFIRK 200
PVL+ NK D A KE I K
Sbjct: 126 PVLVLGNKRDLPGALDEKELIEK 148
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
R K ++ GL SGKT + +L+ + + T E K +
Sbjct: 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP------TIGFSIEKFKSSSLS-F 69
Query: 120 HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 179
+ D+ G R R + + + I+FV+D+ + L A E L +L + + ++IP
Sbjct: 70 TVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRL-RMVVAKEELDTLLNHPDIKHRRIP 128
Query: 180 VLICCNKTD 188
+L NK D
Sbjct: 129 ILFFANKMD 137
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVH 120
+KK I++ GL +GKT + Y+++ G V + P T + E+ + I
Sbjct: 14 QKKDVRILMVGLDAAGKTTILYKVK-----LGEVVTTIP---TIGFNVETVEFRNI-SFT 64
Query: 121 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 180
+ DV G ++RP + G++FVVD+ + A E L+ ++ + K +
Sbjct: 65 VWDVGGQDKIRPLWRHYYSNTDGLIFVVDSND-RERIDDAREELHRMINEEEL--KDAII 121
Query: 181 LICCNKTD 188
L+ NK D
Sbjct: 122 LVFANKQD 129
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL +GKT + Y+L+ G + VT++ T + E+ +K ++ DV G
Sbjct: 3 ILMLGLDAAGKTTILYKLKLGQS----VTTIP----TVGFNVETVTYKNVK-FNVWDVGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
++RP + G++FVVD + A + L+ I+ + + + +LI NK
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILIFANK 110
Query: 187 TD 188
D
Sbjct: 111 QD 112
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL +GKT + Y+L+ G + VT++ T + E+ +K ++ DV G
Sbjct: 3 ILMLGLDAAGKTTILYKLKLGQS----VTTIP----TVGFNVETVTYKNVK-FNVWDVGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
++RP + G++FVVD + A + L+ I+ + + + +LI NK
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILIFANK 110
Query: 187 TD 188
D
Sbjct: 111 QD 112
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK I++ GL +GKT + Y+L+ G + + P T + E+ + I +
Sbjct: 18 KKEMRILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNI-SFTV 68
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
DV G ++RP + G++FVVD+ + A + L+ +L + + +L
Sbjct: 69 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDEL--RDAVLL 125
Query: 182 ICCNKTD 188
+ NK D
Sbjct: 126 VFANKQD 132
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLV 122
K I++ GL +GKT + Y+L+ G +VT++ T + E+ +K ++
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVK-FNVW 62
Query: 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182
DV G ++RP + G++FVVD + A + L+ I+ + + + +LI
Sbjct: 63 DVGGLDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILI 119
Query: 183 CCNKTD 188
NK D
Sbjct: 120 FANKQD 125
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
K I++ GL +GKT + Y+L+ G +VT++ T + E+ +K ++
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVK-FNV 370
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
DV G ++RP + G++FVVD + A + L+ I+ + + + +L
Sbjct: 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIIL 427
Query: 182 ICCNKTDKVTAHTKEFIRKQM 202
I NK D A I++++
Sbjct: 428 IFANKQDLPDAMKPHEIQEKL 448
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
K I++ GL G+GKT + Y+L+ G V + P T + E+ + I +
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLK-----LGEVITTIP---TIGFNVETVQYKNI-SFTV 65
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
DV G R+R + G++FVVD+ + A E + +L + + L
Sbjct: 66 WDVGGQDRIRSLWRHYYRNTEGVIFVVDSND-RSRIGEAREVMQRMLNEDEL--RNAAWL 122
Query: 182 ICCNKTD 188
+ NK D
Sbjct: 123 VFANKQD 129
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL +GKT + Y+L+ G +VT++ T + E+ +K ++ DV G
Sbjct: 5 ILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVK-FNVWDVGG 55
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
++RP + G++FVVD + A + L+ I+ + + + +LI NK
Sbjct: 56 LDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILIFANK 112
Query: 187 TD 188
D
Sbjct: 113 QD 114
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
K I++ GL G+GKT + Y+L+ G V + P T + E + I +
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLK-----LGEVITTIP---TIGFNVECVQYCNI-SFTV 65
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDA 150
DV G R+R + G++FVVD+
Sbjct: 66 WDVGGQDRIRSLWRHYYCNTEGVIFVVDS 94
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
K I++ GL G+GKT + Y+L+ G V + P T + E+ + I +
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLK-----LGEVITTIP---TIGFNVETVQYKNI-SFTV 65
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDA 150
DV G R+R + G++FV+D+
Sbjct: 66 WDVGGQDRIRSLWRHYYRNTEGVIFVIDS 94
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL +GKT + Y+L+ G +VT++ T + E+ +K ++ DV G
Sbjct: 6 ILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVK-FNVWDVGG 56
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
++RP + G++FVVD + A + L+ I+ + + + +LI NK
Sbjct: 57 LDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILIFANK 113
Query: 187 TD 188
D
Sbjct: 114 QD 115
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL +GKT + Y+L+ G + + P T + E+ + I + DV G
Sbjct: 3 ILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNI-SFTVWDVGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
++RP + G++FVVD+ + + A E L +L + + +L+ NK
Sbjct: 54 QDKIRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDEL--RDAVLLVFANK 110
Query: 187 TD 188
D
Sbjct: 111 QD 112
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK I++ GL +GKT + Y+L+ G VT++ T + E+ + I +
Sbjct: 27 KKQMRILMVGLDAAGKTTILYKLKLGE----IVTTIP----TIGFNVETVEYKNI-CFTV 77
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDA 150
DV G ++RP + G++FVVD+
Sbjct: 78 WDVGGQDKIRPLWRHYFQNTQGLIFVVDS 106
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL G+GKT + Y+L+ G V + P T + E+ + I + DV G
Sbjct: 3 ILMVGLDGAGKTTVLYKLK-----LGEVITTIP---TIGFNVETVQYKNI-SFTVWDVGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
R+R + G++FVVD+ + A E + +L + + L+ NK
Sbjct: 54 QDRIRSLWRHYYRNTEGVIFVVDSND-RSRIGEAREVMQRMLNEDEL--RNAAWLVFANK 110
Query: 187 TD 188
D
Sbjct: 111 QD 112
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I+ GL +GKT + Y+L+ G + VT++ T + E+ +K ++ DV G
Sbjct: 3 ILXLGLDAAGKTTILYKLKLGQS----VTTIP----TVGFNVETVTYKNVK-FNVWDVGG 53
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
++RP + G++FVVD + A + L+ I+ + + +LI NK
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDRE--XRDAIILIFANK 110
Query: 187 TD 188
D
Sbjct: 111 QD 112
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVD 123
S I++ GL +GKT + Y+L+ G + + P T + E+ + I + D
Sbjct: 2 SMRILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNI-SFTVWD 52
Query: 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 183
V G ++RP + G++FVVD+ + + A E L +L + + +L+
Sbjct: 53 VGGLDKIRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDEL--RDAVLLVF 109
Query: 184 CNKTD 188
NK D
Sbjct: 110 ANKQD 114
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 67 IVLAGLSGSGKTVLFYQ-LRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLV--D 123
+++ GL +GKT + YQ L + H T ++ N + V +K H + D
Sbjct: 19 VIIVGLDNAGKTTILYQFLMNEVVH--TSPTIGSNVEEIV----------VKNTHFLMWD 66
Query: 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 183
+ G LR + + I+ VVD+++ + E LY +L + + +K VLI
Sbjct: 67 IGGQESLRSSWNTYYSNTEFIILVVDSID-RERLAITKEELYRMLAHEDL--RKAAVLIF 123
Query: 184 CNKTDKVTAHTKEFIRKQM 202
NK D T I K +
Sbjct: 124 ANKQDMKGCMTAAEISKYL 142
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
KK I++ GL +GKT + Y+L+ G + + P T + E+ + I +
Sbjct: 15 KKEMRILMVGLDAAGKTSILYKLK-----LGEIVTTIP---TIGFNVETVEYKNI-SFTV 65
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
DV G ++RP + I+FVVD+ + A E L +L + + +L
Sbjct: 66 WDVGGQDKIRPLWRHYYQNTQAIIFVVDSND-RDRIGEAREELMKMLNEDEM--RNAILL 122
Query: 182 ICCNKTD 188
+ NK D
Sbjct: 123 VFANKHD 129
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHL 121
K+ + L GL SGKT + G + + T + KG + + +
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIP-------TVGFNMRKVTKGNV-TIKI 71
Query: 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 181
D+ G R R + + IV+++DA + A+ L+++L + + IPVL
Sbjct: 72 WDIGGQPRFRSMWERYCRGVNAIVYMIDAAD-REKIEASRNELHNLLDKPQL--QGIPVL 128
Query: 182 ICCNKTDKVTA-HTKEFIRK 200
+ NK D A K+ I K
Sbjct: 129 VLGNKRDLPNALDEKQLIEK 148
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 26/129 (20%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV------- 119
+++ GL +GKT + YQ SM NE V+H+ T ++ +
Sbjct: 19 VIIVGLDNAGKTTILYQF-----------SM--NE---VVHTSPTIGSNVEEIVINNTRF 62
Query: 120 HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 179
+ D+ G LR + + ++ VVD+ + S E LY +L + + +K
Sbjct: 63 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD-RERISVTREELYKMLAHEDL--RKAG 119
Query: 180 VLICCNKTD 188
+LI NK D
Sbjct: 120 LLIFANKQD 128
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 26/129 (20%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV------- 119
+++ GL +GKT + YQ SM NE V+H+ T ++ +
Sbjct: 19 VIIVGLDNAGKTTILYQF-----------SM--NE---VVHTSPTIGSNVEEIVINNTRF 62
Query: 120 HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 179
+ D+ G LR + + ++ VVD+ + S E LY +L + + +K
Sbjct: 63 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD-RERISVTREELYKMLAHEDL--RKAG 119
Query: 180 VLICCNKTD 188
+LI NK D
Sbjct: 120 LLIFANKQD 128
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 26/136 (19%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
R + +++ GL +GKT + YQ SM NE V+H+ T ++ +
Sbjct: 17 RGSQEHKVIIVGLDNAGKTTILYQF-----------SM--NE---VVHTSPTIGSNVEEI 60
Query: 120 -------HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNST 172
+ D+ G LR + + ++ VVD+ + S E LY +L +
Sbjct: 61 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD-RERISVTREELYKMLAHED 119
Query: 173 VVKKKIPVLICCNKTD 188
+ +K +LI NK D
Sbjct: 120 L--RKAGLLIFANKQD 133
>pdb|1PKF|A Chain A, Crystal Structure Of Epothilone D-Bound Cytochrome
P450epok
Length = 419
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFS 235
T+ + +R ++++ +D+L +RS E DV D+ GIP +A S
Sbjct: 115 TSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPMRAIS 159
>pdb|1Q5D|A Chain A, Epothilone B-Bound Cytochrome P450epok
pdb|1Q5E|A Chain A, Substrate-Free Cytochrome P450epok
Length = 419
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFS 235
T+ + +R ++++ +D+L +RS E DV D+ GIP +A S
Sbjct: 115 TSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPMRAIS 159
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL G+GKT + Y+L G V + P T + E+ +K + D+ G
Sbjct: 5 ILILGLDGAGKTTILYRL-----QVGEVVTTIP---TIGFNVETVTYKNLK-FQVWDLGG 55
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALE 152
+ +RP + +++VVD+ +
Sbjct: 56 QTSIRPYWRCYYSNTDAVIYVVDSCD 81
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 26/129 (20%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV------- 119
+++ GL +GKT + YQ SM NE V+H+ T ++ +
Sbjct: 25 VIIVGLDNAGKTTILYQF-----------SM--NE---VVHTSPTIGSNVEEIVINNTRF 68
Query: 120 HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 179
+ D+ G LR + + ++ VVD+ + S E LY +L + + +K
Sbjct: 69 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD-RERISVTREELYKMLAHEDL--RKAG 125
Query: 180 VLICCNKTD 188
+LI NK D
Sbjct: 126 LLIFANKQD 134
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 17/141 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + + V ++ V H T +G IK ++ D G
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 73
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 126
Query: 185 NKTD----KVTAHTKEFIRKQ 201
NK D KV A + F RK+
Sbjct: 127 NKVDIKDRKVKAKSIVFHRKK 147
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 68
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 121
Query: 185 NKTD----KVTAHTKEFIRKQMEKEID 207
NK D KV A + F RK+ + D
Sbjct: 122 NKVDIKDRKVKAKSIVFHRKKNLQYYD 148
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFH---TNRGPIK-FNVWDTAG 68
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 121
Query: 185 NKTD----KVTAHTKEFIRKQMEKEID 207
NK D KV A + F RK+ + D
Sbjct: 122 NKVDIKDRKVKAKSIVFHRKKNLQYYD 148
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 18/174 (10%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDG---STHQGTVTSMEPNEDTFVLHSESTKKGKI 116
RR+ + I L G G GKT ++ DG + TV ++ + TF+ +G +
Sbjct: 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN-HPVTFL-----DDQGNV 60
Query: 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKK 176
++ D G + D + A+G + D + C + ++ + VV
Sbjct: 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRI-TCQNLARWVKEF---QAVVGN 116
Query: 177 KIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIP 230
+ P+++C NK D ++ I K++ E+ L+ E G+P
Sbjct: 117 EAPIVVCANKID---IKNRQKISKKLVMEV--LKGKNYEYFEISAKTAHNFGLP 165
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 61
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 114
Query: 185 NKTD----KVTAHTKEFIRKQMEKEID 207
NK D KV A + F RK+ + D
Sbjct: 115 NKVDIKDRKVKAKSIVFHRKKNLQYYD 141
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL G+GKT + Y+L G V + P T + E+ +K + D+ G
Sbjct: 7 ILILGLDGAGKTTILYRL-----QVGEVVTTIP---TIGFNVETVTYKNLK-FQVWDLGG 57
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDA 150
+ +RP + +++VVD+
Sbjct: 58 LTSIRPYWRCYYSNTDAVIYVVDS 81
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I++ GL G+GKT + Y+L G V + P T + E+ +K + D+ G
Sbjct: 10 ILILGLDGAGKTTILYRL-----QVGEVVTTIP---TIGFNVETVTYKNLK-FQVWDLGG 60
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALE 152
+ +RP + +++VVD+ +
Sbjct: 61 LTSIRPYWRCYYSNTDAVIYVVDSCD 86
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 68
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 121
Query: 185 NKTD----KVTAHTKEFIRKQ 201
NK D KV A + F RK+
Sbjct: 122 NKVDIKDRKVKAKSIVFHRKK 142
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 68
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 121
Query: 185 NKTD----KVTAHTKEFIRKQ 201
NK D KV A + F RK+
Sbjct: 122 NKVDIKDRKVKAKSIVFHRKK 142
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 73
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 126
Query: 185 NKTD----KVTAHTKEFIRKQ 201
NK D KV A + F RK+
Sbjct: 127 NKVDIKDRKVKAKSIVFHRKK 147
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 15 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 70
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 71 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 123
Query: 185 NKTD----KVTAHTKEFIRKQMEKEID 207
NK D KV A + F RK+ + D
Sbjct: 124 NKVDIKDRKVKAKSIVFHRKKNLQYYD 150
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 12/136 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+++ GL +GKT + Y+L G T E T + K + D+ G
Sbjct: 25 VLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE---------TLQYKNISFEVWDLGG 75
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186
+ +RP + +++VVD+ + A LY +L + +K +LI NK
Sbjct: 76 QTGVRPYWRCYFSDTDAVIYVVDSTDR-DRMGVAKHELYALLDEDEL--RKSLLLIFANK 132
Query: 187 TDKVTAHTKEFIRKQM 202
D A ++ I +Q+
Sbjct: 133 QDLPDAASEAEIAEQL 148
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 68
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 69 QEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 121
Query: 185 NKTD----KVTAHTKEFIRKQ 201
NK D KV A + F RK+
Sbjct: 122 NKVDIKDRKVKAKSIVFHRKK 142
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFH---TNRGPIK-FNVWDTAG 68
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 121
Query: 185 NKTD----KVTAHTKEFIRKQ 201
NK D KV A + F RK+
Sbjct: 122 NKVDIKDRKVKAKSIVFHRKK 142
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 68
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 69 QEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 121
Query: 185 NKTD----KVTAHTKEFIRKQ 201
NK D KV A + F RK+
Sbjct: 122 NKVDIKDRKVKAKSIVFHRKK 142
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 9 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 64
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 117
Query: 185 NKTD----KVTAHTKEFIRKQMEKEID 207
NK D KV A + F RK+ + D
Sbjct: 118 NKVDIKDRKVKAKSIVFHRKKNLQYYD 144
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 17/141 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 68
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I F V + N L + N IP+++C
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 121
Query: 185 NKTD----KVTAHTKEFIRKQ 201
NK D KV A + F RK+
Sbjct: 122 NKVDIKDRKVKAKSIVFHRKK 142
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLV 122
+S +VL G G GKT L DG+ + ++ + ++++ + KGK +H+
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV---FERYMVNLQV--KGKPVHLHIW 87
Query: 123 DVPG---HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVK---- 175
D G + RLRP F P A+ ++ D PN +D + N +
Sbjct: 88 DTAGQDDYDRLRPL---FYPDASVLLLCFDVTS--PNS-------FDNIFNRWYPEVNHF 135
Query: 176 -KKIPVLICCNKTD 188
KK+P+++ KTD
Sbjct: 136 CKKVPIIVVGCKTD 149
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
+VL G G+GKT + G + V ++ V H T +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH---TNRGPIK-FNVWDTAG 68
Query: 127 HSRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
+ D + QA A I+F V + N L + N IP+++C
Sbjct: 69 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCG 121
Query: 185 NKTD----KVTAHTKEFIRKQ 201
NK D KV A + F RK+
Sbjct: 122 NKVDIKDRKVKAKSIVFHRKK 142
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 58 VFRRKKST-----TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK 112
+ R+ KS I+L GL +GKT L QL ++ + P + F + S ++
Sbjct: 6 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED-----ISHITPTQG-FNIKSVQSQ 59
Query: 113 KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTN 170
K+ ++ D+ G ++RP + +++V+D+ + L +
Sbjct: 60 GFKL---NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL 116
Query: 171 STVVKKKIPVLICCNKTDKVTA 192
S V PVLI NK D +TA
Sbjct: 117 SCV-----PVLIFANKQDLLTA 133
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTS--MEPNEDTFVLHSE----STKKGKIKPVHLVDV 124
G SG GKT + YQ DG + +T+ ++ E V + + +G+ + L D
Sbjct: 18 GDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDT 77
Query: 125 PGHSRLRPKLDEFLPQAAGIVFVVD 149
G R R F A G + + D
Sbjct: 78 AGLERFRSLTTAFFRDAMGFLLLFD 102
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 58 VFRRKKST-----TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK 112
+ R+ KS I+L GL +GKT L QL ++ + P + F + S ++
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED-----ISHITPTQG-FNIKSVQSQ 58
Query: 113 KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTN 170
K+ ++ D+ G ++RP + +++V+D+ + L +
Sbjct: 59 GFKL---NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL 115
Query: 171 STVVKKKIPVLICCNKTDKVTA 192
S V PVLI NK D +TA
Sbjct: 116 SCV-----PVLIFANKQDLLTA 132
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I+L GL +GKT L QL ++ + P + F + S ++ K+ ++ D+ G
Sbjct: 7 ILLLGLDNAGKTTLLKQLASED-----ISHITPTQG-FNIKSVQSQGFKL---NVWDIGG 57
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
++RP + +++V+D+ + L + S V PVLI
Sbjct: 58 QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV-----PVLIFA 112
Query: 185 NKTDKVTA 192
NK D +TA
Sbjct: 113 NKQDLLTA 120
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 35/169 (20%)
Query: 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDV 124
TI+ AG S GK+ L Y+L +G P ++ E K ++D
Sbjct: 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGK----RPGVTRKIIEIEW------KNHKIIDX 51
Query: 125 PG-----------HSRLRPKLDEFLPQAAG----IVFVVD---ALEFLPNCSAASEYLYD 166
PG R++ ++ F+ A V VVD A E + E D
Sbjct: 52 PGFGFXXGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPID 111
Query: 167 ILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK------EIDKL 209
+ + + IP ++ NK DK+ + +E I EK EIDK+
Sbjct: 112 VEFYQFLRELDIPTIVAVNKLDKIK-NVQEVINFLAEKFEVPLSEIDKV 159
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGT-VTSMEPNEDTFVLHSESTKKGKIKPVHLVDVP 125
++L G SG GKT L + +DG+ GT ++++ + VL + K + + D
Sbjct: 13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK----VKLQMWDTA 68
Query: 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTN-STVVKKKIPVLICC 184
G R R + A ++ + D A+ + + LT + + +++
Sbjct: 69 GQERFRSVTHAYYRDAHALLLLYDV-----TNKASFDNIQAWLTEIHEYAQHDVALMLLG 123
Query: 185 NKTDKVTAHTKEFIRKQMEK 204
NK D +AH + R+ EK
Sbjct: 124 NKVD--SAHERVVKREDGEK 141
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 20/155 (12%)
Query: 62 KKSTTIVLAGLSGSGKT-----VLFYQLRD---GSTHQGTVT----SMEPNEDTFVLHSE 109
K+ IV+A +GKT +L+Y R G H+G T E + +
Sbjct: 10 KRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV 69
Query: 110 STKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILT 169
+T K ++++D PGH +++ + G + V D+ + SE ++
Sbjct: 70 TTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW---- 122
Query: 170 NSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204
K K+P + NK DK A IR E+
Sbjct: 123 -RQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 120 HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPN-CSAASEYLYDI---LTNSTVVK 175
HL VPG L GIVFV D+ PN A +E + ++ L +
Sbjct: 77 HLYTVPGQVFYNASRKLILRGVDGIVFVADS---APNRLRANAESMRNMRENLAEYGLTL 133
Query: 176 KKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205
+P++I NK D A E +R ++ E
Sbjct: 134 DDVPIVIQVNKRDLPDALPVEMVRAVVDPE 163
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I+L GL +GKT L QL ++ + P + F + S ++ K+ ++ D+ G
Sbjct: 7 ILLLGLDNAGKTTLLKQLASED-----ISHITPTQG-FNIKSVQSQGFKL---NVWDIGG 57
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICC 184
++RP + +++V+D+ + L + S V PVLI
Sbjct: 58 LRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV-----PVLIFA 112
Query: 185 NKTDKVTA 192
NK D +TA
Sbjct: 113 NKQDLLTA 120
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 28/140 (20%)
Query: 66 TIVLAGLSGSGKTVLFYQL--------RDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIK 117
T+ L G +GSGKT L L R G +GT T+ E LH + + G +
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAK--LHRTTVRTG-VA 67
Query: 118 P-------VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTN 170
P V L+D PG+ +F+ + G + DA L SA +
Sbjct: 68 PLLFRGHRVFLLDAPGYG-------DFVGEIRGALEAADAA--LVAVSAEAGVQVGTERA 118
Query: 171 STVVKK-KIPVLICCNKTDK 189
TV ++ +P ++ K DK
Sbjct: 119 WTVAERLGLPRMVVVTKLDK 138
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I+L G SG GK+ L + + + +T++ + F + + K+K + L D G
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID---FKIKTVDINGKKVK-LQLWDTAG 61
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALE 152
R R + A GI+ V D +
Sbjct: 62 QERFRTITTAYYRGAXGIILVYDVTD 87
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/193 (18%), Positives = 84/193 (43%), Gaps = 25/193 (12%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
++++ +++ GL +GKT + + + + ++ P T + ++ + K +
Sbjct: 12 QKERELRLLMLGLDNAGKTTILKKF-----NGEDIDTISP---TLGFNIKTLEHRGFK-L 62
Query: 120 HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALE--FLPNCSAASEYLYDILTNSTVVKKK 177
++ DV G LR + G+++VVD+ + + +C + S +V+++
Sbjct: 63 NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ--------SLLVEER 114
Query: 178 IP---VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAF 234
+ +LI NK D A + IR+ + E+D +R+ + L +PG +
Sbjct: 115 LAGATLLIFANKQDLPGALSSNAIREVL--ELDSIRSHHWCIQGCSAVTGENL-LPGIDW 171
Query: 235 SFSQCHNKVSVAE 247
+++ A+
Sbjct: 172 LLDDISSRIFTAD 184
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I+L G SG GK+ L + + + +T++ + F + + K+K + L D G
Sbjct: 10 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID---FKIKTVDINGKKVK-LQLWDTAG 65
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALE 152
R R + A GI+ V D +
Sbjct: 66 QERFRTITTAYYRGAMGIILVYDVTD 91
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 12/136 (8%)
Query: 24 LNRGIEFINQIPPTQLYIACA---VXXXXXXXXXXXQVFRRKKSTTIVLAGLSGSGKTVL 80
L + + ++ Q P +Q+ A V R++ + L GLSG
Sbjct: 79 LRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADP 138
Query: 81 FYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140
L G + + SM + F+ E PV ++D P + L+ +
Sbjct: 139 L-NLSGGQKQRLAIASMLARDTRFLALDE--------PVSMLDPPSQREIFQVLESLKNE 189
Query: 141 AAGIVFVVDALEFLPN 156
GI+ V LE+L +
Sbjct: 190 GKGIILVTHELEYLDD 205
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 111 TKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTN 170
K G +HL+D PGH ++ L G + ++DA + + + A+ +
Sbjct: 67 AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW------- 119
Query: 171 STVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204
V++ + ++ NK D +A + ++KQ+E+
Sbjct: 120 -KAVEQDLVIIPVINKIDLPSADV-DRVKKQIEE 151
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 111 TKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTN 170
K G +HL+D PGH ++ L G + ++DA + + + A+ +
Sbjct: 67 AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW------- 119
Query: 171 STVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204
V++ + ++ NK D +A + ++KQ+E+
Sbjct: 120 -KAVEQDLVIIPVINKIDLPSADV-DRVKKQIEE 151
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 83 QLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKL 134
+L GS QG T + +P D FV+HS + K P L V H+ + +L
Sbjct: 158 ELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL 211
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG 126
I+L G SG GK+ L + + + +T++ + F + + K+K + L D G
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID---FKIKTVDINGKKVK-LQLWDTAG 78
Query: 127 HSRLRPKLDEFLPQAAGIVFVVDALE 152
R R + A GI+ V D +
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTD 104
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 83 QLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKL 134
+L GS QG T +++P D FV+H+ + K P L V H+ + +L
Sbjct: 139 ELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARL 192
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPV 119
R+K +++ G SG GKT L ++ + Q ++ + F+ + K+ +
Sbjct: 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGAD---FLTKEVTVDGDKVATM 60
Query: 120 HLVDVPGHSRLRPKLDEFLPQAAGIVFVVD---ALEFLPNCSAASEYLYDILTNSTVVKK 176
+ D G R + F A V V D A F S E+L NS +
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS---PE 117
Query: 177 KIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208
P +I NK D +K+ + ++ +E+ K
Sbjct: 118 TFPFVILGNKID--AEESKKIVSEKSAQELAK 147
>pdb|1HTW|A Chain A, Complex Of Hi0065 With Adp And Magnesium
pdb|1HTW|B Chain B, Complex Of Hi0065 With Adp And Magnesium
pdb|1HTW|C Chain C, Complex Of Hi0065 With Adp And Magnesium
Length = 158
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKI 116
+K+ + L G G+GKT L + G HQG V S T+ L E GK+
Sbjct: 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKS-----PTYTLVEEYNIAGKM 80
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLV 122
AG + + + +L+Y R G H+G T E + + +T K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DAPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 183 CCNKTDKVTAHTKEFIRKQMEK 204
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLV 122
AG + + + +L+Y R G H+G T E + + +T K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DAPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 183 CCNKTDKVTAHTKEFIRKQMEK 204
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLV 122
AG + + + +L+Y R G H+G T E + + +T K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 183 CCNKTDKVTAHTKEFIRKQMEK 204
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLV 122
AG + + + +L+Y R G H+G T E + + +T K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 183 CCNKTDKVTAHTKEFIRKQMEK 204
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLV 122
AG + + + +L+Y R G H+G T E + + +T K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 183 CCNKTDKVTAHTKEFIRKQMEK 204
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 114 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA-----LEFLPNCSAASE 162
G+ ++ +D PGH ++ L G + VVDA + L NC A E
Sbjct: 68 GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME 121
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 114 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA-----LEFLPNCSAASE 162
G+ ++ +D PGH ++ L G + VVDA + L NC A E
Sbjct: 68 GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME 121
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLV 122
AG + + + +L+Y R G H+G T E + + +T K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 183 CCNKTDKVTAHTKEFIRKQMEK 204
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|1FL9|A Chain A, The Yjee Protein
pdb|1FL9|B Chain B, The Yjee Protein
pdb|1FL9|C Chain C, The Yjee Protein
Length = 161
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKI 116
+K+ + L G G+GKT L + G HQG V S T+ L E GK+
Sbjct: 34 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKS-----PTYTLVEEYNIAGKM 83
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 57 QVFRRKKSTTIVLAGLSGSGKTV-LFYQLRDGSTHQGTVTSMEPNEDTFVLHS 108
Q+ R +++ +I+++G SG+GKTV Y +R +T G+ + E N + VL S
Sbjct: 149 QMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSAS--EANVEEKVLAS 199
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 10/154 (6%)
Query: 61 RKKSTTIVLAGLSGSGKTV----LFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKI 116
R+ + IV G SGKT ++ ++ +G + + E +E T G++
Sbjct: 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEXVSLATE-DERTLFFDFLPLDIGEV 69
Query: 117 KPV----HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS-EYLYDILTNS 171
K HL VPG L GIVFV D+ +A S + L
Sbjct: 70 KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEY 129
Query: 172 TVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205
+ +P++I NK D A E +R ++ E
Sbjct: 130 GLTLDDVPIVIQVNKRDLPDALPVEXVRAVVDPE 163
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 57 QVFRRKKSTTIVLAGLSGSGKTV-LFYQLRDGSTHQGTVTSMEPNEDTFVLHS 108
Q+ R +++ +I+++G SG+GKTV Y +R +T G+ + E N + VL S
Sbjct: 149 QMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSAS--EANVEEKVLAS 199
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 57 QVFRRKKSTTIVLAGLSGSGKTV-LFYQLRDGSTHQGTVTSMEPNEDTFVLHS 108
Q+ R +++ +I+++G SG+GKTV Y +R +T G+ + E N + VL S
Sbjct: 149 QMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSAS--EANVEEKVLAS 199
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 59 FRRKKSTTIVLAGLSGSGKT-----VLFYQLRD---GSTHQGT--VTSMEPNEDTFVLHS 108
F +K+ I + +GKT +L+Y R G TH+G + ME +D + +
Sbjct: 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITIT 64
Query: 109 ESTKKGKIKP--VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYD 166
+ + V+++D PGH L +++ L G V V+DA +E ++
Sbjct: 65 SAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQS---GVEPQTETVWR 121
Query: 167 ILTNSTVVKKKIPVLICCNKTDKVTAH 193
T V P ++ NK DK+ A+
Sbjct: 122 QATTYGV-----PRIVFVNKMDKLGAN 143
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGT--VTSMEPNEDTFVLHSESTKKGKIKP--VHLV 122
AG + + + +L+Y R G TH+G + ME +D + + + + V+++
Sbjct: 21 AGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNII 80
Query: 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182
D PGH L +++ L G V V+DA +E ++ T V P ++
Sbjct: 81 DTPGHVDLTVEVERSLRVLDGAVTVLDAQS---GVEPQTETVWRQATTYGV-----PRIV 132
Query: 183 CCNKTDKVTAH 193
NK DK+ A+
Sbjct: 133 FVNKMDKLGAN 143
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 118 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF--------LPNCSAASEYLYDILT 169
P +VDV G R + E I+F+V + EF N S +++ +
Sbjct: 202 PFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV 261
Query: 170 NSTVVKKKIPVLICCNKTD 188
N+ V + +++ NKTD
Sbjct: 262 NNRVF-SNVSIILFLNKTD 279
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 118 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF--------LPNCSAASEYLYDILT 169
P +VDV G R + E I+F+V + EF N S +++ +
Sbjct: 178 PFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV 237
Query: 170 NSTVVKKKIPVLICCNKTD 188
N+ V + +++ NKTD
Sbjct: 238 NNRVF-SNVSIILFLNKTD 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,216,824
Number of Sequences: 62578
Number of extensions: 264584
Number of successful extensions: 1158
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 1082
Number of HSP's gapped (non-prelim): 112
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)