Query 024385
Match_columns 268
No_of_seqs 313 out of 2893
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:10:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0090 Signal recognition par 100.0 1.4E-35 3.1E-40 227.0 19.5 226 32-266 5-238 (238)
2 cd04105 SR_beta Signal recogni 100.0 1.3E-30 2.8E-35 208.3 19.5 196 65-265 1-203 (203)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 3.9E-31 8.5E-36 199.6 13.9 163 62-268 3-168 (200)
4 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.9E-30 4.1E-35 196.7 13.3 162 62-266 7-171 (205)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.5E-30 1.2E-34 193.4 14.4 163 63-267 21-185 (221)
6 cd04120 Rab12 Rab12 subfamily. 100.0 1.6E-28 3.6E-33 195.5 17.2 160 66-266 2-162 (202)
7 cd04121 Rab40 Rab40 subfamily. 100.0 2.5E-28 5.3E-33 192.7 16.3 158 63-265 5-165 (189)
8 cd04133 Rop_like Rop subfamily 100.0 3.9E-28 8.4E-33 189.5 16.3 164 65-265 2-171 (176)
9 KOG0394 Ras-related GTPase [Ge 100.0 4.7E-29 1E-33 186.6 9.6 169 61-265 6-176 (210)
10 smart00177 ARF ARF-like small 100.0 8.8E-28 1.9E-32 188.0 17.1 163 62-267 11-174 (175)
11 cd04149 Arf6 Arf6 subfamily. 100.0 5.8E-28 1.3E-32 187.7 15.9 159 62-264 7-167 (168)
12 cd01875 RhoG RhoG subfamily. 100.0 7E-28 1.5E-32 191.1 16.5 172 64-266 3-176 (191)
13 PLN00223 ADP-ribosylation fact 100.0 8.3E-28 1.8E-32 189.0 16.6 161 62-266 15-177 (181)
14 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.6E-27 3.5E-32 190.6 17.8 162 65-266 1-167 (201)
15 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1E-27 2.2E-32 184.7 16.0 157 65-264 1-158 (159)
16 KOG0078 GTP-binding protein SE 100.0 4.2E-28 9.2E-33 186.6 13.6 162 62-266 10-173 (207)
17 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 9.1E-28 2E-32 187.3 15.6 161 64-266 2-163 (172)
18 cd00877 Ran Ran (Ras-related n 100.0 1.7E-27 3.6E-32 184.8 16.2 157 65-266 1-158 (166)
19 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.7E-27 3.8E-32 183.5 16.0 159 65-266 2-161 (162)
20 cd04158 ARD1 ARD1 subfamily. 100.0 1.7E-27 3.6E-32 185.4 16.0 158 66-267 1-161 (169)
21 cd04175 Rap1 Rap1 subgroup. T 100.0 1.1E-27 2.4E-32 185.4 14.9 161 64-266 1-162 (164)
22 cd04122 Rab14 Rab14 subfamily. 100.0 1.8E-27 3.9E-32 184.7 16.0 158 65-266 3-163 (166)
23 PTZ00133 ADP-ribosylation fact 100.0 2.5E-27 5.5E-32 186.4 16.8 163 61-267 14-178 (182)
24 cd04136 Rap_like Rap-like subf 100.0 2.4E-27 5.2E-32 183.1 16.1 160 65-266 2-162 (163)
25 cd04140 ARHI_like ARHI subfami 100.0 2.6E-27 5.6E-32 183.6 16.2 163 65-267 2-165 (165)
26 cd04157 Arl6 Arl6 subfamily. 100.0 3.2E-27 6.9E-32 182.3 16.6 158 66-264 1-161 (162)
27 cd04117 Rab15 Rab15 subfamily. 100.0 3.5E-27 7.5E-32 182.2 16.5 158 65-265 1-160 (161)
28 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.6E-27 7.7E-32 184.5 16.3 171 65-266 2-174 (175)
29 PLN03071 GTP-binding nuclear p 100.0 2.3E-27 4.9E-32 191.9 15.7 160 62-266 11-171 (219)
30 cd01865 Rab3 Rab3 subfamily. 100.0 4E-27 8.7E-32 182.5 16.3 158 65-266 2-162 (165)
31 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.7E-27 5.8E-32 186.2 15.4 164 65-266 1-165 (182)
32 PTZ00369 Ras-like protein; Pro 100.0 3.9E-27 8.4E-32 186.6 16.2 161 62-266 3-166 (189)
33 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.1E-27 6.6E-32 184.0 15.1 162 66-266 2-164 (170)
34 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.7E-27 1E-31 184.5 16.2 120 62-191 3-123 (182)
35 cd04131 Rnd Rnd subfamily. Th 100.0 5.8E-27 1.3E-31 183.6 16.4 171 64-265 1-174 (178)
36 cd01871 Rac1_like Rac1-like su 100.0 6.4E-27 1.4E-31 182.9 16.6 169 65-265 2-173 (174)
37 cd01867 Rab8_Rab10_Rab13_like 100.0 5.6E-27 1.2E-31 182.1 16.2 159 64-266 3-164 (167)
38 cd04161 Arl2l1_Arl13_like Arl2 100.0 6.4E-27 1.4E-31 181.7 16.1 159 66-264 1-166 (167)
39 cd04176 Rap2 Rap2 subgroup. T 100.0 4.6E-27 9.9E-32 181.7 15.2 160 64-266 1-162 (163)
40 smart00173 RAS Ras subfamily o 100.0 4.8E-27 1E-31 181.8 15.3 161 65-267 1-162 (164)
41 cd01864 Rab19 Rab19 subfamily. 100.0 7.7E-27 1.7E-31 180.9 16.4 163 63-266 2-165 (165)
42 cd04134 Rho3 Rho3 subfamily. 99.9 5.6E-27 1.2E-31 185.7 15.8 171 65-266 1-173 (189)
43 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 4.8E-27 1E-31 182.2 15.1 158 65-266 3-163 (166)
44 cd04144 Ras2 Ras2 subfamily. 99.9 3.7E-27 8.1E-32 186.9 14.8 161 66-266 1-162 (190)
45 cd04112 Rab26 Rab26 subfamily. 99.9 7E-27 1.5E-31 185.5 16.2 159 65-266 1-162 (191)
46 PF00025 Arf: ADP-ribosylation 99.9 6.6E-27 1.4E-31 182.8 15.8 160 62-265 12-174 (175)
47 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 6.6E-27 1.4E-31 182.9 15.8 161 62-265 13-174 (174)
48 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.1E-26 2.3E-31 179.7 16.4 161 64-266 2-163 (164)
49 cd04109 Rab28 Rab28 subfamily. 99.9 8.1E-27 1.7E-31 188.4 16.3 163 65-266 1-165 (215)
50 cd04154 Arl2 Arl2 subfamily. 99.9 8.9E-27 1.9E-31 182.0 15.9 160 62-264 12-172 (173)
51 cd01861 Rab6 Rab6 subfamily. 99.9 1.2E-26 2.6E-31 179.0 15.9 159 65-266 1-161 (161)
52 cd04116 Rab9 Rab9 subfamily. 99.9 1.5E-26 3.2E-31 180.1 16.6 164 63-266 4-170 (170)
53 cd04127 Rab27A Rab27a subfamil 99.9 9.6E-27 2.1E-31 182.9 15.5 167 63-266 3-176 (180)
54 smart00178 SAR Sar1p-like memb 99.9 1.5E-26 3.3E-31 182.4 16.5 169 62-266 15-184 (184)
55 cd04110 Rab35 Rab35 subfamily. 99.9 1.5E-26 3.2E-31 184.7 16.3 159 63-266 5-166 (199)
56 cd01868 Rab11_like Rab11-like. 99.9 1.7E-26 3.7E-31 178.9 16.0 159 64-266 3-164 (165)
57 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 2.1E-26 4.5E-31 186.5 16.9 119 63-191 12-131 (232)
58 cd04124 RabL2 RabL2 subfamily. 99.9 2.3E-26 5E-31 177.6 16.4 156 65-266 1-157 (161)
59 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.5E-26 3.4E-31 179.4 15.1 164 66-265 1-167 (167)
60 cd04119 RJL RJL (RabJ-Like) su 99.9 2.2E-26 4.9E-31 178.4 16.0 161 65-266 1-166 (168)
61 cd00879 Sar1 Sar1 subfamily. 99.9 3.5E-26 7.5E-31 181.3 17.2 173 62-266 17-190 (190)
62 KOG0098 GTPase Rab2, small G p 99.9 7.2E-27 1.6E-31 175.2 12.3 160 62-264 4-165 (216)
63 cd04113 Rab4 Rab4 subfamily. 99.9 2.7E-26 5.8E-31 177.0 16.1 158 65-266 1-161 (161)
64 KOG0080 GTPase Rab18, small G 99.9 6.8E-27 1.5E-31 171.0 11.8 160 63-265 10-172 (209)
65 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.4E-26 5.2E-31 179.0 15.7 163 64-268 2-170 (170)
66 cd01860 Rab5_related Rab5-rela 99.9 3.8E-26 8.2E-31 176.5 16.6 160 64-267 1-163 (163)
67 cd01866 Rab2 Rab2 subfamily. 99.9 2.7E-26 5.8E-31 178.4 15.8 159 64-266 4-165 (168)
68 cd04126 Rab20 Rab20 subfamily. 99.9 2.3E-26 5E-31 185.2 15.8 114 65-191 1-114 (220)
69 cd04106 Rab23_lke Rab23-like s 99.9 3.4E-26 7.5E-31 176.5 16.0 158 65-265 1-161 (162)
70 PF09439 SRPRB: Signal recogni 99.9 3E-27 6.6E-32 182.0 9.7 174 63-243 2-181 (181)
71 cd04151 Arl1 Arl1 subfamily. 99.9 3.5E-26 7.6E-31 176.0 15.6 156 66-264 1-157 (158)
72 smart00176 RAN Ran (Ras-relate 99.9 2E-26 4.4E-31 183.2 14.7 152 70-266 1-153 (200)
73 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 3.7E-26 8E-31 184.1 16.1 119 65-192 2-120 (222)
74 cd04143 Rhes_like Rhes_like su 99.9 3.9E-26 8.5E-31 187.3 16.3 161 65-266 1-170 (247)
75 cd04111 Rab39 Rab39 subfamily. 99.9 5.3E-26 1.1E-30 183.0 16.1 161 64-266 2-165 (211)
76 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 5.4E-26 1.2E-30 176.0 15.4 154 67-263 2-162 (164)
77 cd04125 RabA_like RabA-like su 99.9 7.3E-26 1.6E-30 179.2 16.1 159 65-266 1-161 (188)
78 cd04132 Rho4_like Rho4-like su 99.9 1.2E-25 2.6E-30 177.8 17.3 161 65-266 1-166 (187)
79 cd04118 Rab24 Rab24 subfamily. 99.9 1.1E-25 2.4E-30 178.9 17.0 163 65-266 1-165 (193)
80 cd04142 RRP22 RRP22 subfamily. 99.9 1.3E-25 2.9E-30 178.7 17.1 163 65-265 1-172 (198)
81 smart00174 RHO Rho (Ras homolo 99.9 8.8E-26 1.9E-30 176.4 15.8 168 67-265 1-170 (174)
82 cd01863 Rab18 Rab18 subfamily. 99.9 1.3E-25 2.8E-30 173.2 16.4 159 65-266 1-161 (161)
83 PLN03110 Rab GTPase; Provision 99.9 9.3E-26 2E-30 182.2 15.9 161 63-266 11-173 (216)
84 cd04103 Centaurin_gamma Centau 99.9 8E-26 1.7E-30 173.8 14.8 156 65-265 1-157 (158)
85 smart00175 RAB Rab subfamily o 99.9 1.3E-25 2.8E-30 173.6 16.0 159 65-267 1-162 (164)
86 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.7E-25 3.6E-30 172.1 16.4 156 66-264 1-157 (158)
87 cd01862 Rab7 Rab7 subfamily. 99.9 1.9E-25 4.1E-30 174.0 16.8 162 65-266 1-166 (172)
88 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.7E-25 3.6E-30 176.3 16.6 166 63-266 2-169 (183)
89 KOG0073 GTP-binding ADP-ribosy 99.9 2.2E-25 4.7E-30 163.8 15.7 164 61-266 13-177 (185)
90 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.4E-25 2.9E-30 172.9 15.5 158 66-264 1-159 (160)
91 KOG0087 GTPase Rab11/YPT3, sma 99.9 3E-26 6.4E-31 175.6 11.3 158 63-263 13-172 (222)
92 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.6E-25 3.4E-30 173.3 15.4 159 65-266 1-163 (164)
93 KOG0070 GTP-binding ADP-ribosy 99.9 4.6E-26 9.9E-31 171.8 11.7 164 61-267 14-178 (181)
94 cd04177 RSR1 RSR1 subgroup. R 99.9 2.5E-25 5.4E-30 172.9 16.3 162 64-266 1-163 (168)
95 KOG0079 GTP-binding protein H- 99.9 3.8E-26 8.2E-31 164.9 10.1 157 65-265 9-167 (198)
96 KOG0086 GTPase Rab4, small G p 99.9 8.4E-26 1.8E-30 164.0 11.9 154 64-259 9-163 (214)
97 KOG0095 GTPase Rab30, small G 99.9 8.4E-26 1.8E-30 163.4 11.2 160 64-265 7-167 (213)
98 PLN03108 Rab family protein; P 99.9 3.8E-25 8.3E-30 177.9 16.2 160 63-266 5-167 (210)
99 cd01893 Miro1 Miro1 subfamily. 99.9 7.4E-25 1.6E-29 170.0 16.9 160 66-266 2-163 (166)
100 cd04123 Rab21 Rab21 subfamily. 99.9 6.4E-25 1.4E-29 169.1 16.3 160 65-266 1-161 (162)
101 cd01870 RhoA_like RhoA-like su 99.9 5.2E-25 1.1E-29 172.2 15.7 172 64-266 1-174 (175)
102 cd04139 RalA_RalB RalA/RalB su 99.9 5E-25 1.1E-29 170.1 15.3 158 65-266 1-161 (164)
103 PF00071 Ras: Ras family; Int 99.9 5.2E-25 1.1E-29 170.0 14.8 157 66-266 1-160 (162)
104 cd04114 Rab30 Rab30 subfamily. 99.9 7.4E-25 1.6E-29 170.3 15.7 162 63-266 6-168 (169)
105 cd04135 Tc10 TC10 subfamily. 99.9 9.2E-25 2E-29 170.6 16.3 171 65-266 1-173 (174)
106 cd01873 RhoBTB RhoBTB subfamil 99.9 1.1E-24 2.3E-29 172.9 16.4 167 64-265 2-194 (195)
107 cd04159 Arl10_like Arl10-like 99.9 1.2E-24 2.6E-29 166.8 15.8 156 67-264 2-158 (159)
108 cd00157 Rho Rho (Ras homology) 99.9 1.2E-24 2.6E-29 169.3 16.0 159 65-264 1-170 (171)
109 PLN03118 Rab family protein; P 99.9 1.3E-24 2.9E-29 175.0 16.7 164 62-266 12-176 (211)
110 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.3E-24 2.8E-29 169.8 15.9 117 65-191 1-118 (173)
111 cd00154 Rab Rab family. Rab G 99.9 1.5E-24 3.1E-29 166.2 16.0 156 65-264 1-159 (159)
112 KOG0071 GTP-binding ADP-ribosy 99.9 8.8E-25 1.9E-29 156.4 13.5 165 61-268 14-179 (180)
113 cd04147 Ras_dva Ras-dva subfam 99.9 8.7E-25 1.9E-29 174.4 15.2 162 66-267 1-163 (198)
114 cd01892 Miro2 Miro2 subfamily. 99.9 5.8E-25 1.3E-29 171.0 13.6 161 62-266 2-165 (169)
115 KOG0075 GTP-binding ADP-ribosy 99.9 7.3E-25 1.6E-29 158.0 12.5 164 62-267 18-182 (186)
116 cd04146 RERG_RasL11_like RERG/ 99.9 8.4E-25 1.8E-29 169.4 13.6 160 66-266 1-163 (165)
117 cd04148 RGK RGK subfamily. Th 99.9 1.7E-24 3.8E-29 175.3 15.0 158 65-266 1-162 (221)
118 cd01890 LepA LepA subfamily. 99.9 5.7E-24 1.2E-28 166.9 16.8 163 65-268 1-178 (179)
119 cd04155 Arl3 Arl3 subfamily. 99.9 7.4E-24 1.6E-28 165.3 16.1 159 62-264 12-172 (173)
120 cd00876 Ras Ras family. The R 99.9 5E-24 1.1E-28 163.8 14.4 159 66-266 1-160 (160)
121 KOG0093 GTPase Rab3, small G p 99.9 2.8E-24 6E-29 155.1 11.5 158 63-263 20-179 (193)
122 cd04137 RheB Rheb (Ras Homolog 99.9 7.3E-24 1.6E-28 166.5 14.9 160 65-266 2-162 (180)
123 cd04129 Rho2 Rho2 subfamily. 99.9 2.5E-23 5.5E-28 164.5 15.7 165 65-266 2-172 (187)
124 PTZ00132 GTP-binding nuclear p 99.9 4.4E-23 9.4E-28 166.7 16.5 160 62-266 7-167 (215)
125 TIGR00436 era GTP-binding prot 99.9 4.4E-23 9.4E-28 172.1 16.0 155 66-268 2-165 (270)
126 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 7.6E-23 1.7E-27 158.7 16.2 164 65-267 1-166 (168)
127 cd01897 NOG NOG1 is a nucleola 99.9 9.4E-23 2E-27 158.3 16.3 156 65-266 1-167 (168)
128 PRK15494 era GTPase Era; Provi 99.9 5E-23 1.1E-27 176.4 16.0 159 62-268 50-217 (339)
129 cd04171 SelB SelB subfamily. 99.9 7.7E-23 1.7E-27 157.9 15.2 158 66-264 2-163 (164)
130 KOG0091 GTPase Rab39, small G 99.9 2.6E-23 5.6E-28 152.7 11.7 161 63-265 7-171 (213)
131 cd01891 TypA_BipA TypA (tyrosi 99.9 8.7E-23 1.9E-27 162.3 15.2 170 64-267 2-192 (194)
132 COG1159 Era GTPase [General fu 99.9 6.7E-23 1.4E-27 166.3 13.7 159 63-268 5-173 (298)
133 KOG0083 GTPase Rab26/Rab37, sm 99.9 7.8E-25 1.7E-29 155.5 2.0 157 68-266 1-159 (192)
134 KOG0097 GTPase Rab14, small G 99.9 6.2E-23 1.3E-27 147.3 11.5 153 62-258 9-164 (215)
135 KOG0088 GTPase Rab21, small G 99.9 1.1E-23 2.5E-28 153.8 7.4 160 62-265 11-173 (218)
136 cd00881 GTP_translation_factor 99.9 2.3E-22 5.1E-27 158.8 15.7 175 66-268 1-188 (189)
137 cd01898 Obg Obg subfamily. Th 99.9 4.3E-22 9.2E-27 154.8 16.2 159 66-266 2-170 (170)
138 cd01889 SelB_euk SelB subfamil 99.9 3.6E-22 7.8E-27 158.5 15.6 170 65-268 1-187 (192)
139 KOG0081 GTPase Rab27, small G 99.9 8.3E-24 1.8E-28 154.6 5.4 128 65-195 10-142 (219)
140 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.6E-21 3.5E-26 171.9 20.6 169 9-192 143-325 (442)
141 PRK05291 trmE tRNA modificatio 99.9 1.1E-21 2.3E-26 174.0 18.9 201 9-266 151-369 (449)
142 cd04102 RabL3 RabL3 (Rab-like3 99.9 5.9E-22 1.3E-26 157.6 15.2 127 65-192 1-144 (202)
143 KOG0395 Ras-related GTPase [Ge 99.9 3.2E-22 7E-27 158.0 13.0 159 63-264 2-162 (196)
144 PF02421 FeoB_N: Ferrous iron 99.9 3.1E-22 6.7E-27 151.1 10.3 147 65-262 1-156 (156)
145 PF00009 GTP_EFTU: Elongation 99.9 5.5E-22 1.2E-26 156.9 12.3 166 63-267 2-187 (188)
146 cd01878 HflX HflX subfamily. 99.9 6E-21 1.3E-25 153.0 18.2 155 62-266 39-204 (204)
147 TIGR00231 small_GTP small GTP- 99.9 3.2E-21 7E-26 147.2 15.4 158 64-263 1-160 (161)
148 PLN00023 GTP-binding protein; 99.9 2.1E-21 4.6E-26 161.8 15.4 130 62-192 19-166 (334)
149 PRK12299 obgE GTPase CgtA; Rev 99.9 3.3E-21 7.1E-26 164.2 16.5 160 64-266 158-327 (335)
150 PRK00089 era GTPase Era; Revie 99.9 2.9E-21 6.4E-26 163.1 15.3 160 63-268 4-172 (292)
151 COG0486 ThdF Predicted GTPase 99.9 9.4E-21 2E-25 162.5 18.2 152 62-266 215-375 (454)
152 TIGR01393 lepA GTP-binding pro 99.9 4.9E-21 1.1E-25 174.5 17.1 165 63-268 2-181 (595)
153 cd01894 EngA1 EngA1 subfamily. 99.9 2.4E-21 5.2E-26 148.4 12.8 148 68-266 1-157 (157)
154 cd01879 FeoB Ferrous iron tran 99.9 3E-21 6.4E-26 148.2 13.3 147 69-266 1-156 (158)
155 PRK00454 engB GTP-binding prot 99.9 3.7E-21 8E-26 153.1 14.2 165 57-268 17-195 (196)
156 PRK03003 GTP-binding protein D 99.9 3.4E-21 7.3E-26 172.4 15.3 155 62-267 36-199 (472)
157 TIGR03156 GTP_HflX GTP-binding 99.9 4.1E-21 8.8E-26 164.9 14.4 153 63-266 188-351 (351)
158 KOG0076 GTP-binding ADP-ribosy 99.9 3.8E-22 8.2E-27 148.2 6.9 167 60-267 13-187 (197)
159 PRK04213 GTP-binding protein; 99.9 6.7E-21 1.4E-25 152.3 14.7 162 62-267 7-192 (201)
160 TIGR02729 Obg_CgtA Obg family 99.9 7.6E-21 1.6E-25 161.8 15.6 162 63-267 156-329 (329)
161 KOG0393 Ras-related small GTPa 99.9 7.9E-22 1.7E-26 152.6 8.6 119 63-191 3-123 (198)
162 TIGR03594 GTPase_EngA ribosome 99.9 4E-21 8.7E-26 170.8 14.4 159 64-265 172-342 (429)
163 cd01895 EngA2 EngA2 subfamily. 99.9 1.1E-20 2.4E-25 146.9 15.1 158 64-265 2-173 (174)
164 PRK03003 GTP-binding protein D 99.9 4.5E-21 9.8E-26 171.6 14.6 160 63-266 210-381 (472)
165 KOG0074 GTP-binding ADP-ribosy 99.9 3.1E-21 6.8E-26 138.4 10.3 166 61-268 14-180 (185)
166 TIGR03598 GTPase_YsxC ribosome 99.9 5.8E-21 1.3E-25 149.9 12.9 154 57-255 11-178 (179)
167 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.6E-20 3.4E-25 143.7 14.9 147 65-267 2-157 (157)
168 COG1084 Predicted GTPase [Gene 99.9 3.9E-20 8.6E-25 151.6 17.9 172 12-201 122-304 (346)
169 COG1160 Predicted GTPases [Gen 99.9 6.1E-21 1.3E-25 163.2 13.6 152 65-267 4-165 (444)
170 TIGR00487 IF-2 translation ini 99.9 2E-20 4.4E-25 169.8 17.7 162 62-264 85-247 (587)
171 TIGR02528 EutP ethanolamine ut 99.9 6E-21 1.3E-25 144.1 11.9 134 66-263 2-141 (142)
172 cd01888 eIF2_gamma eIF2-gamma 99.9 1.4E-20 3.1E-25 150.5 14.5 117 117-268 83-200 (203)
173 KOG0072 GTP-binding ADP-ribosy 99.9 3.1E-21 6.7E-26 138.9 9.2 163 62-267 16-179 (182)
174 TIGR00491 aIF-2 translation in 99.9 3.1E-20 6.7E-25 168.3 17.5 184 63-264 3-213 (590)
175 CHL00189 infB translation init 99.8 2.6E-20 5.6E-25 171.5 16.7 166 62-265 242-408 (742)
176 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.6E-20 7.9E-25 146.7 15.3 169 64-268 2-194 (195)
177 cd04163 Era Era subfamily. Er 99.8 3.9E-20 8.6E-25 142.7 14.8 157 64-266 3-168 (168)
178 cd01881 Obg_like The Obg-like 99.8 2.5E-20 5.4E-25 145.6 13.7 155 69-265 1-175 (176)
179 PRK05306 infB translation init 99.8 4E-20 8.7E-25 171.6 17.0 161 62-264 288-449 (787)
180 PRK09518 bifunctional cytidyla 99.8 4.3E-20 9.4E-25 172.6 15.8 156 61-267 272-436 (712)
181 cd01885 EF2 EF2 (for archaea a 99.8 2.7E-19 5.9E-24 144.1 17.8 189 65-268 1-221 (222)
182 PTZ00099 rab6; Provisional 99.8 3.8E-20 8.3E-25 144.5 12.5 129 99-267 11-142 (176)
183 cd00882 Ras_like_GTPase Ras-li 99.8 8.7E-20 1.9E-24 138.0 13.7 155 69-264 1-157 (157)
184 PRK00093 GTP-binding protein D 99.8 7.5E-20 1.6E-24 162.9 15.4 158 63-264 172-341 (435)
185 TIGR03594 GTPase_EngA ribosome 99.8 4.6E-20 9.9E-25 164.0 14.0 151 66-267 1-160 (429)
186 PRK05433 GTP-binding protein L 99.8 1.2E-19 2.6E-24 165.6 16.5 163 62-268 5-185 (600)
187 TIGR00475 selB selenocysteine- 99.8 1.1E-19 2.5E-24 165.5 15.9 159 66-266 2-165 (581)
188 COG1100 GTPase SAR1 and relate 99.8 1.3E-19 2.7E-24 146.8 14.5 125 64-195 5-129 (219)
189 PRK00093 GTP-binding protein D 99.8 9.3E-20 2E-24 162.2 14.6 149 65-264 2-159 (435)
190 PRK12296 obgE GTPase CgtA; Rev 99.8 1.2E-19 2.6E-24 160.3 14.5 161 63-266 158-339 (500)
191 PRK15467 ethanolamine utilizat 99.8 1.2E-19 2.7E-24 139.3 12.8 140 66-267 3-147 (158)
192 COG1160 Predicted GTPases [Gen 99.8 2.4E-19 5.1E-24 153.5 15.4 158 63-264 177-348 (444)
193 PRK04004 translation initiatio 99.8 2.6E-19 5.6E-24 162.9 16.4 184 62-263 4-214 (586)
194 cd04165 GTPBP1_like GTPBP1-lik 99.8 2E-19 4.3E-24 145.5 13.9 185 66-266 1-222 (224)
195 TIGR01394 TypA_BipA GTP-bindin 99.8 2E-19 4.4E-24 163.7 15.0 168 65-268 2-192 (594)
196 PRK12298 obgE GTPase CgtA; Rev 99.8 2.4E-19 5.2E-24 155.7 14.9 164 65-267 160-333 (390)
197 PRK11058 GTPase HflX; Provisio 99.8 3.4E-19 7.5E-24 156.4 15.7 154 64-267 197-362 (426)
198 PRK10218 GTP-binding protein; 99.8 5.8E-19 1.3E-23 160.5 17.5 172 63-268 4-196 (607)
199 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.2E-19 7E-24 143.2 13.9 117 66-191 1-144 (208)
200 PRK12317 elongation factor 1-a 99.8 2.4E-19 5.2E-24 158.8 14.0 123 62-191 4-153 (425)
201 PRK12297 obgE GTPase CgtA; Rev 99.8 8.1E-19 1.8E-23 153.2 16.5 156 65-266 159-326 (424)
202 cd04167 Snu114p Snu114p subfam 99.8 2.6E-18 5.7E-23 138.5 18.0 180 65-267 1-211 (213)
203 cd01883 EF1_alpha Eukaryotic e 99.8 5.2E-19 1.1E-23 143.1 13.7 119 66-191 1-151 (219)
204 TIGR00483 EF-1_alpha translati 99.8 3.7E-19 8E-24 157.6 13.9 173 62-267 5-219 (426)
205 PRK09518 bifunctional cytidyla 99.8 4E-19 8.7E-24 166.2 14.3 160 63-266 449-620 (712)
206 cd04168 TetM_like Tet(M)-like 99.8 7.1E-19 1.5E-23 143.5 14.0 189 66-268 1-236 (237)
207 TIGR03680 eif2g_arch translati 99.8 5.4E-19 1.2E-23 155.3 13.9 171 62-267 2-196 (406)
208 cd00880 Era_like Era (E. coli 99.8 1.3E-18 2.7E-23 133.0 14.3 155 69-266 1-163 (163)
209 PRK10512 selenocysteinyl-tRNA- 99.8 1.1E-18 2.3E-23 159.7 15.9 163 66-268 2-167 (614)
210 PRK09554 feoB ferrous iron tra 99.8 1.1E-18 2.5E-23 162.7 16.3 153 63-266 2-167 (772)
211 COG2229 Predicted GTPase [Gene 99.8 3.7E-18 7.9E-23 128.9 15.2 160 62-264 8-175 (187)
212 PF08477 Miro: Miro-like prote 99.8 2.1E-19 4.7E-24 131.4 8.4 116 66-188 1-119 (119)
213 PRK12736 elongation factor Tu; 99.8 1.8E-18 3.8E-23 151.5 15.1 171 61-267 9-201 (394)
214 TIGR00437 feoB ferrous iron tr 99.8 8.4E-19 1.8E-23 160.0 13.3 144 71-265 1-153 (591)
215 PF10662 PduV-EutP: Ethanolami 99.8 1.9E-18 4.2E-23 127.6 11.6 136 65-264 2-143 (143)
216 KOG0462 Elongation factor-type 99.8 3.6E-18 7.7E-23 147.9 14.7 161 62-268 58-236 (650)
217 COG0218 Predicted GTPase [Gene 99.8 5.6E-18 1.2E-22 130.7 14.3 164 60-267 20-197 (200)
218 PRK04000 translation initiatio 99.8 3.3E-18 7.2E-23 150.3 14.6 172 61-267 6-201 (411)
219 PRK12735 elongation factor Tu; 99.8 3.6E-18 7.7E-23 149.7 14.1 170 62-267 10-203 (396)
220 COG0532 InfB Translation initi 99.8 5.7E-18 1.2E-22 147.4 15.1 164 62-264 3-167 (509)
221 cd01876 YihA_EngB The YihA (En 99.8 1.1E-17 2.3E-22 129.4 15.1 156 66-266 1-170 (170)
222 CHL00071 tufA elongation facto 99.8 5.3E-18 1.1E-22 149.2 14.5 170 62-267 10-211 (409)
223 KOG4252 GTP-binding protein [S 99.8 1.6E-19 3.4E-24 134.9 3.8 122 63-193 19-140 (246)
224 KOG0077 Vesicle coat complex C 99.8 2.7E-18 5.9E-23 126.8 10.1 174 62-266 18-192 (193)
225 KOG1145 Mitochondrial translat 99.8 9.3E-18 2E-22 145.3 14.1 161 62-263 151-312 (683)
226 PRK00741 prfC peptide chain re 99.8 9.1E-18 2E-22 151.0 13.2 132 62-204 8-157 (526)
227 cd01896 DRG The developmentall 99.8 1.8E-17 3.8E-22 135.1 12.9 80 66-153 2-90 (233)
228 COG0481 LepA Membrane GTPase L 99.7 1.6E-17 3.5E-22 141.8 12.8 163 62-268 7-187 (603)
229 PLN03126 Elongation factor Tu; 99.7 3.3E-17 7.1E-22 145.7 15.4 157 62-254 79-248 (478)
230 PLN03127 Elongation factor Tu; 99.7 5E-17 1.1E-21 143.8 16.4 171 61-267 58-252 (447)
231 TIGR00485 EF-Tu translation el 99.7 2.7E-17 5.9E-22 144.2 14.5 120 62-191 10-142 (394)
232 PTZ00141 elongation factor 1- 99.7 3.1E-17 6.7E-22 145.3 14.8 175 62-267 5-225 (446)
233 TIGR02034 CysN sulfate adenyly 99.7 3.4E-17 7.3E-22 143.9 14.7 157 65-257 1-187 (406)
234 PRK00049 elongation factor Tu; 99.7 4.2E-17 9.1E-22 142.8 14.7 170 62-267 10-203 (396)
235 KOG1423 Ras-like GTPase ERA [C 99.7 3.6E-17 7.8E-22 132.6 12.6 184 62-268 70-272 (379)
236 PLN00043 elongation factor 1-a 99.7 5.4E-17 1.2E-21 143.7 14.8 119 62-190 5-158 (447)
237 cd04169 RF3 RF3 subfamily. Pe 99.7 3.8E-17 8.3E-22 135.5 13.0 120 64-193 2-139 (267)
238 cd04170 EF-G_bact Elongation f 99.7 4.4E-17 9.5E-22 135.9 12.8 128 66-204 1-142 (268)
239 cd01886 EF-G Elongation factor 99.7 6.7E-17 1.5E-21 134.2 13.3 117 66-192 1-131 (270)
240 PRK05124 cysN sulfate adenylyl 99.7 1.5E-16 3.1E-21 142.1 16.1 122 61-191 24-174 (474)
241 TIGR00503 prfC peptide chain r 99.7 8.6E-17 1.9E-21 144.8 14.6 136 62-206 9-160 (527)
242 cd04104 p47_IIGP_like p47 (47- 99.7 2.5E-16 5.5E-21 125.4 15.2 116 64-191 1-121 (197)
243 PTZ00327 eukaryotic translatio 99.7 1.2E-16 2.6E-21 141.2 14.0 173 61-268 31-234 (460)
244 KOG1707 Predicted Ras related/ 99.7 5.1E-17 1.1E-21 141.8 11.1 145 62-214 7-151 (625)
245 KOG3883 Ras family small GTPas 99.7 6.3E-16 1.4E-20 112.8 14.7 165 62-265 7-173 (198)
246 TIGR00484 EF-G translation elo 99.7 1.6E-16 3.4E-21 148.4 14.7 131 62-203 8-152 (689)
247 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 4.2E-16 9E-21 125.6 15.0 172 66-268 1-177 (232)
248 KOG1489 Predicted GTP-binding 99.7 3.8E-16 8.3E-21 127.4 14.5 160 62-265 194-365 (366)
249 KOG1490 GTP-binding protein CR 99.7 4.7E-17 1E-21 139.7 9.5 203 9-258 119-332 (620)
250 COG0370 FeoB Fe2+ transport sy 99.7 1.6E-16 3.5E-21 142.1 13.3 150 63-265 2-162 (653)
251 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 4.8E-17 1E-21 122.9 7.2 159 63-266 9-168 (216)
252 PRK05506 bifunctional sulfate 99.7 2.9E-16 6.4E-21 145.4 14.0 122 61-191 21-171 (632)
253 COG1217 TypA Predicted membran 99.7 6.4E-16 1.4E-20 131.8 14.2 170 63-268 4-196 (603)
254 PRK13351 elongation factor G; 99.7 4.7E-16 1E-20 145.5 13.3 121 62-192 6-140 (687)
255 COG5256 TEF1 Translation elong 99.7 9.7E-16 2.1E-20 129.5 13.3 161 62-254 5-197 (428)
256 PF01926 MMR_HSR1: 50S ribosom 99.7 1.2E-15 2.7E-20 111.0 11.4 107 66-186 1-116 (116)
257 cd01899 Ygr210 Ygr210 subfamil 99.7 1.5E-15 3.2E-20 128.5 13.2 86 67-152 1-111 (318)
258 PRK12739 elongation factor G; 99.7 1.9E-15 4.1E-20 141.1 14.7 132 62-204 6-151 (691)
259 KOG1191 Mitochondrial GTPase [ 99.6 4.3E-15 9.2E-20 127.8 14.6 126 62-192 266-404 (531)
260 PRK00007 elongation factor G; 99.6 3.6E-15 7.9E-20 139.2 15.2 132 62-204 8-153 (693)
261 COG2262 HflX GTPases [General 99.6 2.7E-14 5.8E-19 121.0 18.8 156 62-267 190-356 (411)
262 cd01850 CDC_Septin CDC/Septin. 99.6 3.2E-15 6.8E-20 124.7 12.9 136 64-208 4-174 (276)
263 COG3596 Predicted GTPase [Gene 99.6 6.8E-15 1.5E-19 118.3 13.9 170 61-267 36-222 (296)
264 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 2.3E-14 5E-19 114.0 14.8 137 65-209 1-148 (196)
265 COG4108 PrfC Peptide chain rel 99.6 1.4E-14 3.1E-19 122.8 12.7 137 62-207 10-162 (528)
266 PRK13768 GTPase; Provisional 99.6 1.5E-14 3.2E-19 119.3 12.3 138 118-267 98-247 (253)
267 PRK14845 translation initiatio 99.6 3E-14 6.5E-19 135.6 15.1 172 75-264 472-670 (1049)
268 PRK09866 hypothetical protein; 99.6 6.9E-14 1.5E-18 125.1 16.3 114 117-265 230-351 (741)
269 KOG1532 GTPase XAB1, interacts 99.6 8.2E-15 1.8E-19 117.4 9.3 193 62-265 17-262 (366)
270 KOG1144 Translation initiation 99.6 1.2E-14 2.6E-19 129.8 11.2 189 62-265 473-685 (1064)
271 PRK07560 elongation factor EF- 99.6 4E-14 8.7E-19 133.0 14.1 136 62-209 18-174 (731)
272 COG0536 Obg Predicted GTPase [ 99.6 4.5E-14 9.8E-19 116.7 12.2 119 65-191 160-289 (369)
273 PLN00116 translation elongatio 99.5 1.4E-13 3.1E-18 130.8 15.0 145 62-214 17-190 (843)
274 PRK09602 translation-associate 99.5 1.7E-13 3.8E-18 119.3 14.3 87 65-151 2-113 (396)
275 PRK12740 elongation factor G; 99.5 6.7E-14 1.5E-18 130.8 12.4 123 70-203 1-137 (668)
276 KOG4423 GTP-binding protein-li 99.5 1.5E-15 3.3E-20 114.4 -0.1 165 64-265 25-192 (229)
277 KOG1673 Ras GTPases [General f 99.5 1.3E-13 2.8E-18 101.1 9.8 164 64-265 20-184 (205)
278 COG1163 DRG Predicted GTPase [ 99.5 1.5E-13 3.3E-18 112.8 11.2 84 64-153 63-153 (365)
279 TIGR00490 aEF-2 translation el 99.5 1.7E-13 3.6E-18 128.5 12.9 140 62-209 17-173 (720)
280 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.4E-12 3E-17 105.9 15.0 110 62-191 37-147 (225)
281 TIGR00991 3a0901s02IAP34 GTP-b 99.5 3.1E-12 6.8E-17 106.5 17.1 138 62-208 36-186 (313)
282 KOG0458 Elongation factor 1 al 99.5 4.1E-13 9E-18 117.8 12.1 161 62-254 175-368 (603)
283 PTZ00416 elongation factor 2; 99.5 3.5E-13 7.6E-18 128.0 12.3 145 62-214 17-184 (836)
284 PF03029 ATP_bind_1: Conserved 99.5 1.7E-13 3.6E-18 111.7 8.3 133 118-265 92-235 (238)
285 KOG0461 Selenocysteine-specifi 99.5 1.8E-12 3.9E-17 107.2 13.7 172 62-266 5-192 (522)
286 PRK09435 membrane ATPase/prote 99.5 3.2E-12 6.9E-17 108.4 15.3 198 21-267 21-260 (332)
287 COG2895 CysN GTPases - Sulfate 99.4 8.8E-13 1.9E-17 109.3 11.1 124 62-193 4-155 (431)
288 COG4917 EutP Ethanolamine util 99.4 4.9E-13 1.1E-17 94.6 8.3 138 65-265 2-144 (148)
289 TIGR00750 lao LAO/AO transport 99.4 2.7E-12 6E-17 108.6 14.0 192 21-265 3-236 (300)
290 COG5257 GCD11 Translation init 99.4 6E-13 1.3E-17 109.0 9.1 172 62-268 8-203 (415)
291 cd00066 G-alpha G protein alph 99.4 1.1E-11 2.4E-16 105.5 14.7 73 117-191 161-242 (317)
292 cd01853 Toc34_like Toc34-like 99.4 6.6E-12 1.4E-16 103.0 12.0 123 62-193 29-165 (249)
293 smart00275 G_alpha G protein a 99.4 2.3E-11 5E-16 104.5 15.3 73 117-191 184-265 (342)
294 KOG0468 U5 snRNP-specific prot 99.3 1.4E-11 3E-16 109.5 12.8 143 62-215 126-290 (971)
295 COG0480 FusA Translation elong 99.3 6.8E-12 1.5E-16 115.5 11.1 123 62-193 8-144 (697)
296 PF05049 IIGP: Interferon-indu 99.3 3.8E-11 8.3E-16 102.7 14.0 113 62-189 33-153 (376)
297 COG0050 TufB GTPases - transla 99.3 1.2E-11 2.6E-16 100.3 10.0 172 61-268 9-202 (394)
298 KOG3886 GTP-binding protein [S 99.3 7.2E-12 1.6E-16 98.2 7.6 139 63-209 3-148 (295)
299 COG3276 SelB Selenocysteine-sp 99.3 2E-11 4.3E-16 104.4 10.9 156 66-266 2-161 (447)
300 PF04548 AIG1: AIG1 family; I 99.3 2.6E-11 5.7E-16 97.5 10.9 136 66-209 2-149 (212)
301 PTZ00258 GTP-binding protein; 99.3 5.6E-11 1.2E-15 102.8 12.8 90 62-151 19-126 (390)
302 PF00735 Septin: Septin; Inte 99.3 5.4E-11 1.2E-15 99.3 12.3 138 64-209 4-174 (281)
303 TIGR00101 ureG urease accessor 99.3 6.2E-11 1.3E-15 94.2 11.8 100 117-267 92-196 (199)
304 TIGR00073 hypB hydrogenase acc 99.3 1E-10 2.2E-15 93.8 13.0 160 61-267 19-207 (207)
305 PF00350 Dynamin_N: Dynamin fa 99.3 5.5E-11 1.2E-15 92.1 11.0 64 117-187 101-168 (168)
306 PF03308 ArgK: ArgK protein; 99.2 1.2E-10 2.5E-15 94.0 11.2 106 117-265 122-228 (266)
307 COG1703 ArgK Putative periplas 99.2 5.8E-10 1.3E-14 91.3 14.6 204 14-266 9-253 (323)
308 PRK09601 GTP-binding protein Y 99.2 6.3E-10 1.4E-14 95.2 14.5 87 65-151 3-107 (364)
309 KOG0460 Mitochondrial translat 99.2 1.2E-10 2.6E-15 96.3 9.6 172 61-267 51-245 (449)
310 COG5019 CDC3 Septin family pro 99.2 7.5E-10 1.6E-14 93.0 14.4 142 60-209 19-194 (373)
311 KOG0467 Translation elongation 99.2 5.8E-10 1.3E-14 100.8 14.2 192 62-265 7-217 (887)
312 COG5258 GTPBP1 GTPase [General 99.2 2.9E-10 6.2E-15 95.6 11.2 189 62-267 115-338 (527)
313 KOG2655 Septin family protein 99.2 4.9E-10 1.1E-14 94.7 12.5 142 60-209 17-190 (366)
314 TIGR02836 spore_IV_A stage IV 99.2 1.6E-09 3.5E-14 92.9 15.0 123 62-190 15-193 (492)
315 KOG1143 Predicted translation 99.1 1E-10 2.3E-15 97.8 7.1 190 64-268 167-388 (591)
316 smart00053 DYNc Dynamin, GTPas 99.1 1.4E-09 3.1E-14 88.4 13.5 70 117-193 125-208 (240)
317 COG0012 Predicted GTPase, prob 99.1 2.6E-09 5.6E-14 90.3 15.2 90 64-153 2-110 (372)
318 KOG1547 Septin CDC10 and relat 99.1 1E-09 2.2E-14 86.7 11.6 154 54-215 36-222 (336)
319 TIGR00157 ribosome small subun 99.1 3.6E-10 7.9E-15 92.8 9.4 96 128-264 24-120 (245)
320 PRK10463 hydrogenase nickel in 99.1 1.4E-09 3E-14 90.2 12.6 31 57-87 97-127 (290)
321 KOG0082 G-protein alpha subuni 99.1 4.9E-09 1.1E-13 88.7 13.6 73 117-191 195-276 (354)
322 KOG0410 Predicted GTP binding 99.1 8.3E-10 1.8E-14 91.0 8.5 150 62-266 176-340 (410)
323 COG0378 HypB Ni2+-binding GTPa 99.0 1.3E-09 2.7E-14 84.0 7.8 80 143-266 120-200 (202)
324 TIGR00993 3a0901s04IAP86 chlor 99.0 1E-08 2.3E-13 92.7 13.4 120 64-192 118-251 (763)
325 KOG3887 Predicted small GTPase 99.0 2.1E-08 4.5E-13 79.5 13.2 124 64-195 27-153 (347)
326 cd01900 YchF YchF subfamily. 98.9 2.3E-09 5.1E-14 88.8 7.2 85 67-151 1-103 (274)
327 KOG1954 Endocytosis/signaling 98.9 1.1E-08 2.3E-13 85.9 11.0 124 63-194 57-228 (532)
328 cd01859 MJ1464 MJ1464. This f 98.9 4.5E-09 9.6E-14 80.4 6.7 93 130-266 2-95 (156)
329 KOG0463 GTP-binding protein GP 98.9 5.5E-09 1.2E-13 87.8 7.3 185 64-262 133-353 (641)
330 KOG3905 Dynein light intermedi 98.9 1.2E-07 2.6E-12 78.4 14.7 95 62-163 50-150 (473)
331 smart00010 small_GTPase Small 98.9 1.1E-08 2.4E-13 74.7 8.0 91 65-191 1-91 (124)
332 KOG2486 Predicted GTPase [Gene 98.8 4.5E-09 9.8E-14 85.0 4.8 117 62-192 134-263 (320)
333 PF05783 DLIC: Dynein light in 98.8 1.3E-07 2.7E-12 84.1 14.4 87 62-153 23-113 (472)
334 cd01855 YqeH YqeH. YqeH is an 98.8 1.5E-08 3.3E-13 80.1 7.5 101 130-267 24-125 (190)
335 KOG0469 Elongation factor 2 [T 98.8 2.3E-08 5E-13 86.9 9.0 145 62-214 17-190 (842)
336 KOG0465 Mitochondrial elongati 98.8 1.1E-08 2.3E-13 90.8 6.2 124 63-196 38-175 (721)
337 cd01858 NGP_1 NGP-1. Autoanti 98.7 4.2E-08 9.1E-13 75.1 7.6 89 136-265 4-93 (157)
338 PF00503 G-alpha: G-protein al 98.7 3.9E-08 8.5E-13 86.4 8.0 72 117-190 236-316 (389)
339 PRK12289 GTPase RsgA; Reviewed 98.7 6.1E-08 1.3E-12 83.4 8.7 90 134-265 83-173 (352)
340 KOG0464 Elongation factor G [T 98.7 6E-09 1.3E-13 88.6 1.5 122 63-192 36-169 (753)
341 cd01856 YlqF YlqF. Proteins o 98.7 3E-08 6.5E-13 77.1 5.3 97 124-266 2-100 (171)
342 KOG0466 Translation initiation 98.7 2.6E-08 5.7E-13 81.6 5.0 116 117-267 125-241 (466)
343 KOG1707 Predicted Ras related/ 98.7 1.9E-07 4E-12 82.8 10.2 119 62-192 423-541 (625)
344 cd01858 NGP_1 NGP-1. Autoanti 98.7 6.3E-08 1.4E-12 74.2 6.5 57 63-127 101-157 (157)
345 COG5192 BMS1 GTP-binding prote 98.6 4.1E-07 8.9E-12 80.4 11.3 113 62-193 67-179 (1077)
346 KOG0448 Mitofusin 1 GTPase, in 98.6 1.4E-06 3E-11 78.7 14.3 139 59-207 104-289 (749)
347 cd04178 Nucleostemin_like Nucl 98.6 9.8E-08 2.1E-12 74.1 6.3 57 63-127 116-172 (172)
348 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 8.6E-08 1.9E-12 72.0 5.6 57 64-128 83-139 (141)
349 cd01854 YjeQ_engC YjeQ/EngC. 98.6 3.2E-07 7E-12 77.2 8.6 87 136-264 74-161 (287)
350 KOG1491 Predicted GTP-binding 98.6 2.9E-07 6.3E-12 76.7 7.9 92 62-153 18-127 (391)
351 TIGR03596 GTPase_YlqF ribosome 98.5 1.1E-07 2.4E-12 79.6 5.6 97 124-266 4-102 (276)
352 cd03112 CobW_like The function 98.5 5.7E-07 1.2E-11 68.9 8.9 64 117-189 87-158 (158)
353 TIGR00092 GTP-binding protein 98.5 4.4E-07 9.6E-12 77.9 8.9 88 65-152 3-109 (368)
354 PRK00098 GTPase RsgA; Reviewed 98.5 4.8E-07 1E-11 76.6 9.1 86 138-264 78-164 (298)
355 cd01855 YqeH YqeH. YqeH is an 98.5 1.6E-07 3.5E-12 74.2 5.8 60 63-127 126-190 (190)
356 cd01849 YlqF_related_GTPase Yl 98.5 3.9E-07 8.4E-12 69.6 7.4 81 142-265 1-83 (155)
357 cd01851 GBP Guanylate-binding 98.5 1.3E-06 2.9E-11 70.7 10.9 88 63-153 6-104 (224)
358 KOG1486 GTP-binding protein DR 98.5 6.5E-07 1.4E-11 71.7 8.4 85 63-153 61-152 (364)
359 KOG3859 Septins (P-loop GTPase 98.5 8.4E-07 1.8E-11 72.0 9.1 139 61-207 39-206 (406)
360 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3.4E-07 7.4E-12 68.8 6.3 51 134-191 5-56 (141)
361 PRK12288 GTPase RsgA; Reviewed 98.5 1.1E-06 2.4E-11 75.6 10.2 88 138-265 118-206 (347)
362 TIGR03597 GTPase_YqeH ribosome 98.5 5E-07 1.1E-11 78.5 8.0 100 127-265 50-151 (360)
363 PF03193 DUF258: Protein of un 98.5 7E-08 1.5E-12 73.3 2.4 26 63-88 34-59 (161)
364 TIGR03597 GTPase_YqeH ribosome 98.4 2.1E-07 4.5E-12 80.8 4.5 128 64-205 154-294 (360)
365 cd01856 YlqF YlqF. Proteins o 98.4 5.6E-07 1.2E-11 69.9 6.3 58 62-127 113-170 (171)
366 KOG0459 Polypeptide release fa 98.4 8.6E-07 1.9E-11 75.4 7.6 116 117-259 157-278 (501)
367 PRK09563 rbgA GTPase YlqF; Rev 98.4 3E-07 6.4E-12 77.5 4.8 99 122-266 5-105 (287)
368 KOG1487 GTP-binding protein DR 98.4 7.9E-07 1.7E-11 71.5 6.8 83 65-153 60-149 (358)
369 TIGR03596 GTPase_YlqF ribosome 98.4 5.7E-07 1.2E-11 75.3 6.3 58 63-128 117-174 (276)
370 PRK09563 rbgA GTPase YlqF; Rev 98.4 5.4E-07 1.2E-11 75.9 6.1 59 63-129 120-178 (287)
371 cd01849 YlqF_related_GTPase Yl 98.4 6.6E-07 1.4E-11 68.3 6.1 58 62-127 98-155 (155)
372 COG1161 Predicted GTPases [Gen 98.3 8E-07 1.7E-11 75.9 5.9 58 63-128 131-188 (322)
373 COG0523 Putative GTPases (G3E 98.3 1.3E-05 2.9E-10 68.1 13.0 69 117-193 85-161 (323)
374 PRK10416 signal recognition pa 98.3 2.9E-06 6.2E-11 72.3 8.9 65 117-191 197-273 (318)
375 TIGR01425 SRP54_euk signal rec 98.3 1.9E-05 4.2E-10 69.4 14.3 65 117-191 183-253 (429)
376 cd01859 MJ1464 MJ1464. This f 98.3 1.5E-06 3.3E-11 66.3 6.4 27 62-88 99-125 (156)
377 KOG0705 GTPase-activating prot 98.3 1.1E-06 2.3E-11 77.5 5.8 113 61-187 27-139 (749)
378 PRK12288 GTPase RsgA; Reviewed 98.3 9.4E-07 2E-11 76.1 5.1 25 65-89 206-230 (347)
379 KOG0099 G protein subunit Galp 98.3 1.2E-06 2.6E-11 70.6 4.8 73 117-191 202-283 (379)
380 PRK13796 GTPase YqeH; Provisio 98.3 1.7E-06 3.7E-11 75.3 6.0 61 63-128 159-221 (365)
381 COG1162 Predicted GTPases [Gen 98.2 1.5E-06 3.3E-11 72.1 4.6 25 63-87 163-187 (301)
382 PF02492 cobW: CobW/HypB/UreG, 98.2 1.9E-06 4E-11 67.4 4.7 68 117-193 85-157 (178)
383 TIGR03348 VI_IcmF type VI secr 98.2 5E-06 1.1E-10 82.5 8.6 118 65-190 112-256 (1169)
384 TIGR00157 ribosome small subun 98.2 3.3E-06 7.3E-11 69.4 6.1 26 64-89 120-145 (245)
385 PRK14974 cell division protein 98.2 1.2E-05 2.5E-10 68.9 9.4 67 117-193 223-295 (336)
386 PRK12289 GTPase RsgA; Reviewed 98.2 2.9E-06 6.3E-11 73.1 5.8 24 65-88 173-196 (352)
387 KOG1534 Putative transcription 98.2 3.2E-06 7E-11 66.0 4.9 80 118-200 99-187 (273)
388 PRK11537 putative GTP-binding 98.1 3.4E-05 7.4E-10 65.8 11.1 67 117-192 91-165 (318)
389 KOG0447 Dynamin-like GTP bindi 98.1 3.7E-05 8.1E-10 68.1 11.4 80 118-203 413-507 (980)
390 TIGR00064 ftsY signal recognit 98.1 5.7E-05 1.2E-09 63.0 12.2 67 117-193 155-233 (272)
391 PRK00098 GTPase RsgA; Reviewed 98.1 8.6E-06 1.9E-10 69.0 6.1 27 63-89 163-189 (298)
392 TIGR02475 CobW cobalamin biosy 98.1 5.7E-05 1.2E-09 65.1 11.1 37 117-153 93-136 (341)
393 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1E-05 2.2E-10 68.2 6.4 26 64-89 161-186 (287)
394 PRK11889 flhF flagellar biosyn 98.0 8.3E-05 1.8E-09 64.4 11.6 66 117-192 321-392 (436)
395 PRK14722 flhF flagellar biosyn 98.0 5.8E-05 1.3E-09 65.4 10.6 127 63-192 136-296 (374)
396 PRK13796 GTPase YqeH; Provisio 98.0 3.3E-05 7.1E-10 67.3 9.2 92 136-266 64-158 (365)
397 KOG2485 Conserved ATP/GTP bind 98.0 2.7E-05 5.9E-10 64.5 7.9 67 62-129 141-208 (335)
398 cd03115 SRP The signal recogni 98.0 0.0001 2.2E-09 57.3 10.7 66 117-192 83-154 (173)
399 cd02038 FleN-like FleN is a me 98.0 0.00024 5.2E-09 53.1 12.2 120 68-208 4-126 (139)
400 PRK01889 GTPase RsgA; Reviewed 98.0 8E-05 1.7E-09 64.6 10.4 83 138-263 110-193 (356)
401 cd03114 ArgK-like The function 98.0 4.2E-05 9E-10 57.9 7.6 57 117-188 92-148 (148)
402 KOG1424 Predicted GTP-binding 97.9 7.4E-06 1.6E-10 71.9 3.3 57 64-128 314-370 (562)
403 PF00448 SRP54: SRP54-type pro 97.9 2.3E-05 5.1E-10 62.1 5.8 66 117-192 84-155 (196)
404 PF06858 NOG1: Nucleolar GTP-b 97.9 5.9E-05 1.3E-09 46.4 5.9 45 140-188 13-58 (58)
405 KOG0085 G protein subunit Galp 97.9 4.3E-06 9.4E-11 66.2 1.2 74 117-192 199-281 (359)
406 COG1618 Predicted nucleotide k 97.9 0.0002 4.4E-09 53.9 9.8 109 62-189 3-142 (179)
407 PRK05703 flhF flagellar biosyn 97.9 0.00028 6E-09 62.7 12.4 65 117-192 300-372 (424)
408 PRK12727 flagellar biosynthesi 97.8 0.00015 3.3E-09 65.2 10.2 118 63-191 349-498 (559)
409 COG1419 FlhF Flagellar GTP-bin 97.8 0.00016 3.4E-09 62.6 9.7 117 63-192 202-353 (407)
410 COG3523 IcmF Type VI protein s 97.8 4.5E-05 9.8E-10 74.3 7.0 120 65-191 126-270 (1188)
411 COG3640 CooC CO dehydrogenase 97.8 0.00014 3E-09 58.1 8.1 62 118-190 135-198 (255)
412 KOG1533 Predicted GTPase [Gene 97.7 4.6E-05 1E-09 60.7 4.4 74 117-193 97-179 (290)
413 COG1162 Predicted GTPases [Gen 97.7 0.00037 8.1E-09 58.1 9.8 88 138-265 77-165 (301)
414 cd03110 Fer4_NifH_child This p 97.7 0.0011 2.3E-08 51.8 12.0 66 116-191 92-157 (179)
415 PRK12726 flagellar biosynthesi 97.7 0.00012 2.6E-09 63.2 6.7 23 63-85 205-227 (407)
416 KOG2423 Nucleolar GTPase [Gene 97.7 7E-05 1.5E-09 63.9 5.1 61 61-129 304-364 (572)
417 PRK00771 signal recognition pa 97.7 0.00017 3.8E-09 63.9 7.7 37 117-153 176-218 (437)
418 PRK14721 flhF flagellar biosyn 97.6 0.00045 9.8E-09 60.9 10.0 24 63-86 190-213 (420)
419 KOG0780 Signal recognition par 97.6 0.00016 3.6E-09 61.6 6.5 53 115-168 182-240 (483)
420 PF09547 Spore_IV_A: Stage IV 97.6 0.003 6.5E-08 55.0 14.0 24 62-85 15-38 (492)
421 TIGR00959 ffh signal recogniti 97.5 0.00027 5.9E-09 62.5 6.6 37 117-153 183-225 (428)
422 PRK10867 signal recognition pa 97.5 0.00083 1.8E-08 59.6 9.6 22 63-84 99-120 (433)
423 PRK14723 flhF flagellar biosyn 97.5 0.00071 1.5E-08 63.6 9.5 23 64-86 185-207 (767)
424 KOG2743 Cobalamin synthesis pr 97.5 0.0011 2.3E-08 55.0 9.1 82 117-203 146-237 (391)
425 KOG2484 GTPase [General functi 97.5 0.0001 2.2E-09 63.1 3.3 59 62-128 250-308 (435)
426 PRK12724 flagellar biosynthesi 97.4 0.00051 1.1E-08 60.2 7.4 119 64-192 223-374 (432)
427 KOG0781 Signal recognition par 97.4 0.00052 1.1E-08 60.1 7.3 72 117-191 467-544 (587)
428 PRK06731 flhF flagellar biosyn 97.4 0.00088 1.9E-08 55.7 8.3 120 63-192 74-226 (270)
429 COG0552 FtsY Signal recognitio 97.4 0.00051 1.1E-08 57.9 6.6 24 62-85 137-160 (340)
430 PRK13695 putative NTPase; Prov 97.4 0.0019 4.1E-08 50.2 9.5 22 65-86 1-22 (174)
431 COG0541 Ffh Signal recognition 97.4 0.00071 1.5E-08 58.9 7.5 50 117-167 183-238 (451)
432 PRK12723 flagellar biosynthesi 97.4 0.0011 2.4E-08 58.0 8.7 66 117-192 255-327 (388)
433 cd01983 Fer4_NifH The Fer4_Nif 97.3 0.0031 6.7E-08 43.3 8.9 97 67-185 2-99 (99)
434 PRK06995 flhF flagellar biosyn 97.3 0.0012 2.6E-08 59.2 8.3 23 64-86 256-278 (484)
435 KOG4273 Uncharacterized conser 97.2 0.0017 3.6E-08 52.4 7.8 131 63-204 3-137 (418)
436 cd02042 ParA ParA and ParB of 97.2 0.0024 5.2E-08 44.9 7.9 82 67-165 2-84 (104)
437 cd04178 Nucleostemin_like Nucl 97.2 0.00037 8E-09 54.1 3.9 44 142-192 1-45 (172)
438 cd02036 MinD Bacterial cell di 97.2 0.0095 2.1E-07 46.1 11.7 65 118-191 64-128 (179)
439 PF05621 TniB: Bacterial TniB 97.2 0.0024 5.2E-08 53.5 8.3 109 58-186 55-189 (302)
440 cd03111 CpaE_like This protein 97.1 0.0074 1.6E-07 42.8 9.4 97 69-186 5-106 (106)
441 PF13207 AAA_17: AAA domain; P 97.1 0.00046 1E-08 50.0 3.0 22 66-87 1-22 (121)
442 PRK01889 GTPase RsgA; Reviewed 97.1 0.00072 1.6E-08 58.8 4.4 26 63-88 194-219 (356)
443 COG1116 TauB ABC-type nitrate/ 97.1 0.00047 1E-08 55.8 3.0 27 62-88 27-53 (248)
444 PRK08118 topology modulation p 97.0 0.00064 1.4E-08 52.5 3.2 23 65-87 2-24 (167)
445 KOG2484 GTPase [General functi 97.0 0.00081 1.8E-08 57.7 3.9 74 129-209 135-209 (435)
446 PF13555 AAA_29: P-loop contai 96.9 0.00094 2E-08 42.1 3.0 21 65-85 24-44 (62)
447 PF13671 AAA_33: AAA domain; P 96.9 0.00075 1.6E-08 50.4 3.0 20 67-86 2-21 (143)
448 COG1126 GlnQ ABC-type polar am 96.9 0.00097 2.1E-08 52.8 3.5 27 62-88 26-52 (240)
449 COG1161 Predicted GTPases [Gen 96.9 0.0032 6.9E-08 53.9 6.9 73 120-202 13-86 (322)
450 PRK07261 topology modulation p 96.8 0.00093 2E-08 51.8 3.0 22 66-87 2-23 (171)
451 PF03266 NTPase_1: NTPase; In 96.8 0.0028 6E-08 49.0 5.4 21 66-86 1-21 (168)
452 COG0563 Adk Adenylate kinase a 96.8 0.0011 2.4E-08 51.7 3.2 23 65-87 1-23 (178)
453 COG1136 SalX ABC-type antimicr 96.8 0.00097 2.1E-08 53.6 2.8 27 62-88 29-55 (226)
454 cd03116 MobB Molybdenum is an 96.8 0.0034 7.4E-08 48.0 5.5 22 65-86 2-23 (159)
455 cd02019 NK Nucleoside/nucleoti 96.7 0.0015 3.2E-08 42.4 2.8 21 67-87 2-22 (69)
456 PF00005 ABC_tran: ABC transpo 96.7 0.0016 3.4E-08 48.3 3.4 27 62-88 9-35 (137)
457 PF13521 AAA_28: AAA domain; P 96.7 0.0012 2.6E-08 50.7 2.5 22 66-87 1-22 (163)
458 PF03205 MobB: Molybdopterin g 96.6 0.0018 4E-08 48.4 3.0 23 65-87 1-23 (140)
459 COG0194 Gmk Guanylate kinase [ 96.6 0.0031 6.7E-08 48.9 4.2 26 63-88 3-28 (191)
460 KOG1424 Predicted GTP-binding 96.6 0.0035 7.5E-08 55.6 5.0 61 136-203 170-231 (562)
461 smart00382 AAA ATPases associa 96.6 0.0025 5.4E-08 46.7 3.5 26 64-89 2-27 (148)
462 COG3839 MalK ABC-type sugar tr 96.6 0.0018 3.9E-08 55.3 3.0 26 63-88 28-53 (338)
463 COG4619 ABC-type uncharacteriz 96.6 0.0036 7.8E-08 47.8 4.2 25 62-86 27-51 (223)
464 cd00071 GMPK Guanosine monopho 96.5 0.0021 4.5E-08 47.9 2.9 21 67-87 2-22 (137)
465 TIGR00235 udk uridine kinase. 96.5 0.0018 4E-08 51.8 2.8 25 62-86 4-28 (207)
466 PF02263 GBP: Guanylate-bindin 96.5 0.0045 9.9E-08 51.4 5.2 65 62-129 19-86 (260)
467 PRK14738 gmk guanylate kinase; 96.5 0.0021 4.6E-08 51.4 3.1 26 62-87 11-36 (206)
468 cd00820 PEPCK_HprK Phosphoenol 96.5 0.0027 5.9E-08 44.9 3.1 23 63-85 14-36 (107)
469 COG3840 ThiQ ABC-type thiamine 96.5 0.0027 5.9E-08 49.0 3.3 27 62-88 23-49 (231)
470 PRK10078 ribose 1,5-bisphospho 96.5 0.0026 5.7E-08 50.0 3.3 23 65-87 3-25 (186)
471 cd03238 ABC_UvrA The excision 96.5 0.0029 6.2E-08 49.3 3.4 25 62-86 19-43 (176)
472 PRK13833 conjugal transfer pro 96.5 0.011 2.5E-07 50.4 7.3 25 63-87 143-167 (323)
473 PF00004 AAA: ATPase family as 96.5 0.0024 5.2E-08 46.7 2.8 21 67-87 1-21 (132)
474 COG4525 TauB ABC-type taurine 96.4 0.0025 5.3E-08 49.9 2.8 25 62-86 29-53 (259)
475 TIGR02322 phosphon_PhnN phosph 96.4 0.0028 6.1E-08 49.4 3.2 22 66-87 3-24 (179)
476 PRK14530 adenylate kinase; Pro 96.4 0.003 6.4E-08 50.9 3.4 22 64-85 3-24 (215)
477 cd01130 VirB11-like_ATPase Typ 96.4 0.0031 6.7E-08 49.6 3.4 26 62-87 23-48 (186)
478 PF13238 AAA_18: AAA domain; P 96.4 0.0027 5.8E-08 46.3 2.8 21 67-87 1-21 (129)
479 PRK10751 molybdopterin-guanine 96.4 0.003 6.5E-08 48.9 3.1 25 63-87 5-29 (173)
480 COG1117 PstB ABC-type phosphat 96.4 0.0032 6.9E-08 49.9 3.2 25 62-86 31-55 (253)
481 PF00437 T2SE: Type II/IV secr 96.4 0.0086 1.9E-07 50.0 6.0 26 62-87 125-150 (270)
482 KOG3347 Predicted nucleotide k 96.4 0.0029 6.2E-08 47.1 2.6 25 62-86 5-29 (176)
483 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0037 8.1E-08 48.7 3.5 27 62-88 23-49 (177)
484 PRK05480 uridine/cytidine kina 96.4 0.0029 6.3E-08 50.7 3.0 26 62-87 4-29 (209)
485 TIGR03263 guanyl_kin guanylate 96.4 0.0036 7.8E-08 48.8 3.4 23 65-87 2-24 (180)
486 COG1120 FepC ABC-type cobalami 96.4 0.0037 8E-08 51.4 3.5 25 62-86 26-50 (258)
487 PRK08233 hypothetical protein; 96.3 0.0036 7.8E-08 48.8 3.3 24 64-87 3-26 (182)
488 PRK13851 type IV secretion sys 96.3 0.0052 1.1E-07 53.0 4.5 26 62-87 160-185 (344)
489 PRK06217 hypothetical protein; 96.3 0.0033 7.2E-08 49.2 3.1 23 65-87 2-24 (183)
490 cd02023 UMPK Uridine monophosp 96.3 0.0029 6.4E-08 50.2 2.8 21 67-87 2-22 (198)
491 PRK05800 cobU adenosylcobinami 96.3 0.0074 1.6E-07 46.7 4.9 22 66-87 3-24 (170)
492 PRK04195 replication factor C 96.3 0.04 8.8E-07 50.0 10.3 24 64-87 39-62 (482)
493 PLN02796 D-glycerate 3-kinase 96.3 0.017 3.8E-07 49.5 7.4 24 63-86 99-122 (347)
494 TIGR01360 aden_kin_iso1 adenyl 96.3 0.004 8.6E-08 48.8 3.4 23 64-86 3-25 (188)
495 PRK00300 gmk guanylate kinase; 96.3 0.0041 8.9E-08 49.6 3.5 25 63-87 4-28 (205)
496 PRK14737 gmk guanylate kinase; 96.3 0.0043 9.2E-08 48.8 3.4 26 63-88 3-28 (186)
497 cd00009 AAA The AAA+ (ATPases 96.3 0.0094 2E-07 44.0 5.1 26 63-88 18-43 (151)
498 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.2 0.0047 1E-07 49.8 3.6 27 62-88 28-54 (218)
499 cd01131 PilT Pilus retraction 96.2 0.0036 7.9E-08 49.7 2.9 22 66-87 3-24 (198)
500 TIGR03499 FlhF flagellar biosy 96.2 0.016 3.5E-07 48.7 6.8 24 63-86 193-216 (282)
No 1
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=227.01 Aligned_cols=226 Identities=57% Similarity=0.816 Sum_probs=197.2
Q ss_pred ccCChHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccc
Q 024385 32 NQIPPTQLYIACAVLLLTTALL-LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES 110 (268)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (268)
.+.+|...+..+...++..... +.....++.....|+++|+.+||||+|+.+|..+.. +.++++++|+.+.+.+..
T Consensus 5 ~~~~p~~l~~~i~~lli~~~~~~~~~~~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~-~~TvtSiepn~a~~r~gs-- 81 (238)
T KOG0090|consen 5 QQIDPTLLAVIITVLLILTILLFLKLKLFRRSKQNAVLLVGLSDSGKTSLFTQLITGSH-RGTVTSIEPNEATYRLGS-- 81 (238)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcEEEEecCCCCceeeeeehhcCCc-cCeeeeeccceeeEeecC--
Confidence 4566777777666655555444 555666667778999999999999999999999965 447889999998887765
Q ss_pred ccCCceeeEEEEeCCCCCCchhhHhhhcc---CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 111 TKKGKIKPVHLVDVPGHSRLRPKLDEFLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 111 ~~~~~~~~~~i~DtpG~~~~~~~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
-.++++|.|||.+.+.....|+. .+.++|||+|+...........+++.+++.........+|++|++||.
T Consensus 82 ------~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKq 155 (238)
T KOG0090|consen 82 ------ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQ 155 (238)
T ss_pred ------cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecch
Confidence 24799999999999999888887 789999999999876789999999999998876566899999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhhh---ccccccccCcccCCCCCCCeeeccCC-ceeEEEEeeeccCCchhHHHHHH
Q 024385 188 DKVTAHTKEFIRKQMEKEIDKLRASRS---AVSEADVTNDFTLGIPGQAFSFSQCH-NKVSVAEASGLTGEISQVEQFIR 263 (268)
Q Consensus 188 Dl~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~f~f~~~~-~~~~~~~~Sa~~g~i~~l~~~l~ 263 (268)
|+..+.+.+.+++.++++++.++.+++ +++.++..+...++..+.+|.|+++. .++.|.++|+++|++++|.+||+
T Consensus 156 Dl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~~i~~~~~wi~ 235 (238)
T KOG0090|consen 156 DLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTGEIDQWESWIR 235 (238)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcCChHHHHHHHH
Confidence 999999999999999999999999999 57788889999999999999999998 89999999999999999999999
Q ss_pred hhc
Q 024385 264 EQV 266 (268)
Q Consensus 264 ~~~ 266 (268)
+.+
T Consensus 236 ~~l 238 (238)
T KOG0090|consen 236 EAL 238 (238)
T ss_pred HhC
Confidence 864
No 2
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.97 E-value=1.3e-30 Score=208.33 Aligned_cols=196 Identities=46% Similarity=0.641 Sum_probs=154.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC-CE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA-AG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~-d~ 143 (268)
++|+++|++|||||||+++|..+.+... .+++.+....+.... .+....+.+||||||.+++..+..+++.+ ++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t-~~s~~~~~~~~~~~~----~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~ 75 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST-VTSIEPNVATFILNS----EGKGKKFRLVDVPGHPKLRDKLLETLKNSAKG 75 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc-cCcEeecceEEEeec----CCCCceEEEEECCCCHHHHHHHHHHHhccCCE
Confidence 4799999999999999999999877543 334444443332221 12236799999999999999999999998 99
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc----
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA---- 219 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---- 219 (268)
+|||+|+.+..+++.....++..++........++|+++|+||+|+..+.+.+.+++.++++++.++.+++..-..
T Consensus 76 vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~ 155 (203)
T cd04105 76 IVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGD 155 (203)
T ss_pred EEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999999996456788888888876643322368999999999999999999999999999999999998763211
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC--chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~ 265 (268)
+.......+..+..|.|+++..++.|++||++.++ ++.|.+||.++
T Consensus 156 ~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~~ 203 (203)
T cd04105 156 EGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDEL 203 (203)
T ss_pred cccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhhC
Confidence 11111222445678999999999999999999987 99999999874
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-31 Score=199.62 Aligned_cols=163 Identities=21% Similarity=0.281 Sum_probs=134.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....|++++|..++|||||+-|+..+.|... ..++++.-.+...+..++..+++.||||+|+++|.++.+.|++++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~----~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA 78 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHEN----IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGA 78 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccc----cccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCC
Confidence 4578999999999999999999999999664 334444445555566677778999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+++|+|||+++. +||..+..|+.++.++.. +++-+.+||||+||...+.. ++.....+
T Consensus 79 ~AAivvYDit~~-~SF~~aK~WvkeL~~~~~---~~~vialvGNK~DL~~~R~V~~~ea~~yAe---------------- 138 (200)
T KOG0092|consen 79 NAAIVVYDITDE-ESFEKAKNWVKELQRQAS---PNIVIALVGNKADLLERREVEFEEAQAYAE---------------- 138 (200)
T ss_pred cEEEEEEecccH-HHHHHHHHHHHHHHhhCC---CCeEEEEecchhhhhhcccccHHHHHHHHH----------------
Confidence 999999999998 899999999999999864 77778899999999874322 22222211
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....|+|+|||||. +++++..|.+.+|+
T Consensus 139 --------------------~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 139 --------------------SQGLLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred --------------------hcCCEEEEEecccccCHHHHHHHHHHhccC
Confidence 345689999999998 99999999999875
No 4
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-30 Score=196.66 Aligned_cols=162 Identities=19% Similarity=0.290 Sum_probs=132.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...+||+++|++|||||+|+.|+..+.|.+.+..|++. ......+.++|+.+.++||||+||++|+....+|+++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGV----Df~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGV----DFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeee----EEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 34679999999999999999999999998777766543 33344467788889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH-HHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI-RKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+++|+|||+++. +||..+..|+.++..+.. .++|.++||||+|+........- .+.+
T Consensus 83 hGii~vyDiT~~-~SF~~v~~Wi~Ei~~~~~---~~v~~lLVGNK~Dl~~~~~v~~~~a~~f------------------ 140 (205)
T KOG0084|consen 83 HGIIFVYDITKQ-ESFNNVKRWIQEIDRYAS---ENVPKLLVGNKCDLTEKRVVSTEEAQEF------------------ 140 (205)
T ss_pred CeEEEEEEcccH-HHhhhHHHHHHHhhhhcc---CCCCeEEEeeccccHhheecCHHHHHHH------------------
Confidence 999999999998 899999999999998865 78999999999999876533211 1111
Q ss_pred ccCcccCCCCCCCeeeccCCceeE-EEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVS-VAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~-~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. ..+.+ |+|+|||++. +++.+..|...+
T Consensus 141 ----------------a~-~~~~~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 141 ----------------AD-ELGIPIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred ----------------HH-hcCCcceeecccCCccCHHHHHHHHHHHH
Confidence 11 22345 9999999987 888887776654
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.5e-30 Score=193.44 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=134.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.+|++++|+.+|||||||+|+..+.|... +.++++.......+.+.|..+++++|||+||++|+.+.+.|++++.
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~----YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhccc----ccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 458999999999999999999999998554 4555666666666778888999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHH-HHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK-QMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|||.++. .+|+...+|+.+++..... .++-+++||||.||.+.+....... ...+
T Consensus 97 vaviVyDit~~-~Sfe~t~kWi~dv~~e~gs--~~viI~LVGnKtDL~dkrqvs~eEg~~kAk----------------- 156 (221)
T KOG0094|consen 97 VAVIVYDITDR-NSFENTSKWIEDVRRERGS--DDVIIFLVGNKTDLSDKRQVSIEEGERKAK----------------- 156 (221)
T ss_pred EEEEEEecccc-chHHHHHHHHHHHHhccCC--CceEEEEEcccccccchhhhhHHHHHHHHH-----------------
Confidence 99999999998 8999999999999987642 3577889999999987654322211 1111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..++.|+++||++|. +.+++.-|...++
T Consensus 157 ------------------el~a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 157 ------------------ELNAEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred ------------------HhCcEEEEecccCCCCHHHHHHHHHHhcc
Confidence 334589999999998 9999988887664
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=1.6e-28 Score=195.53 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=121.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
.|+++|..|||||||++++..+.|...+.++ .+.......+..++..+.+.+|||+|+++|+..+..|++++|++|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~T----i~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iI 77 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSG----VGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 77 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCc----ceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEE
Confidence 6899999999999999999999886544333 332222333556777789999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|||+++. ++++.+..|+..+.... ..+.|+++|+||+|+........ +..++
T Consensus 78 lVfDvtd~-~Sf~~l~~w~~~i~~~~---~~~~piilVgNK~DL~~~~~v~~--~~~~~--------------------- 130 (202)
T cd04120 78 LVYDITKK-ETFDDLPKWMKMIDKYA---SEDAELLLVGNKLDCETDREISR--QQGEK--------------------- 130 (202)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCH--HHHHH---------------------
Confidence 99999998 88999999887665442 26799999999999964332110 01111
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
|.+...++.|++|||++|. |+++++||.+.+
T Consensus 131 ----------~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 131 ----------FAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred ----------HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0100123579999999999 999999998754
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=2.5e-28 Score=192.73 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=123.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...||+++|..|||||||+.++..+.+...+.++ .+.......+..++..+.+.+|||+|+++|...+..|++.+|
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t----~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad 80 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYN----MGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQ 80 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----ceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 4579999999999999999999998775433322 222222333455677789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|||+++. .+++.+..|+..+.... ++.|++||+||+|+..... .++..+.. +
T Consensus 81 ~illVfD~t~~-~Sf~~~~~w~~~i~~~~----~~~piilVGNK~DL~~~~~v~~~~~~~~a----~------------- 138 (189)
T cd04121 81 GIILVYDITNR-WSFDGIDRWIKEIDEHA----PGVPKILVGNRLHLAFKRQVATEQAQAYA----E------------- 138 (189)
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECccchhccCCCHHHHHHHH----H-------------
Confidence 99999999998 89999999999987653 6899999999999965332 22211111 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++|++|||++|. +++++++|.+.
T Consensus 139 -------------------~~~~~~~e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 139 -------------------RNGMTFFEVSPLCNFNITESFTELARI 165 (189)
T ss_pred -------------------HcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 224589999999998 99999999865
No 8
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=3.9e-28 Score=189.55 Aligned_cols=164 Identities=12% Similarity=0.107 Sum_probs=121.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.|++++|.+|+|||||+.++..+.|...+.+++... +...+..++..+.+.+|||+|+++++.....+++.+|++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~-----~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ 76 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-----FSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVF 76 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceee-----eEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEE
Confidence 489999999999999999999999866555554321 222345567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH----HHHHHHHHHHHHHHhhhccccc
Q 024385 145 VFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF----IRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|+|||.++. ++++.+ ..|+..+.... .+.|+++||||+|+.+...... .+....++.+.
T Consensus 77 ilvyd~~~~-~Sf~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~----------- 140 (176)
T cd04133 77 VLAFSLISR-ASYENVLKKWVPELRHYA----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE----------- 140 (176)
T ss_pred EEEEEcCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH-----------
Confidence 999999998 889998 67888876543 5799999999999965321000 00000111111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
++...+...|+||||++|. |+++++.+.+.
T Consensus 141 ----------------~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 141 ----------------LRKQIGAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred ----------------HHHHcCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 1111222269999999999 99999998874
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=4.7e-29 Score=186.61 Aligned_cols=169 Identities=17% Similarity=0.222 Sum_probs=135.2
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
++.-.||+++|++|+|||||+|+++..+|...+..+ ++....+.++.++++.+.++||||+|+++|.++.-.++++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaT----IgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRg 81 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKAT----IGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRG 81 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccc----cchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecC
Confidence 345689999999999999999999999986655544 4445566778888998999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc-CCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV-KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+|++++|||+++. .+++.+..|-.+++.++... +...|+||+|||+|+....+...-.+....
T Consensus 82 aDcCvlvydv~~~-~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~--------------- 145 (210)
T KOG0394|consen 82 ADCCVLVYDVNNP-KSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQT--------------- 145 (210)
T ss_pred CceEEEEeecCCh-hhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHH---------------
Confidence 9999999999998 89999999999999987743 367899999999999764322111111111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
|....++++|+|+|||.+- +++.++.+.+.
T Consensus 146 ----------------WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 146 ----------------WCKSKGNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred ----------------HHHhcCCceeEEecccccccHHHHHHHHHHH
Confidence 3333678999999999986 77777666543
No 10
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=8.8e-28 Score=187.97 Aligned_cols=163 Identities=22% Similarity=0.349 Sum_probs=121.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||++++..+.+.. +.++ .+..... .... .+.+.+|||||+.+++..+..|++.+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t----~~~~~~~--~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~a 81 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPT----IGFNVET--VTYK--NISFTVWDVGGQDKIRPLWRHYYTNT 81 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCc----cccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCC
Confidence 457899999999999999999998777632 2333 2221111 1222 27899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|++++ .+++...+++..++..... .+.|++||+||+|+....+.+++.+.+.. .
T Consensus 82 d~ii~v~D~t~~-~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~-------------- 142 (175)
T smart00177 82 QGLIFVVDSNDR-DRIDEAREELHRMLNEDEL--RDAVILVFANKQDLPDAMKAAEITEKLGL--H-------------- 142 (175)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHhhCHhh--cCCcEEEEEeCcCcccCCCHHHHHHHhCc--c--------------
Confidence 999999999997 7799999999888764321 57899999999999765544433332210 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
. .....+.++++||++|+ ++++++||.+.+.
T Consensus 143 --------------~-~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 143 --------------S-IRDRNWYIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred --------------c-cCCCcEEEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 0 00234678899999999 9999999988753
No 11
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=5.8e-28 Score=187.72 Aligned_cols=159 Identities=22% Similarity=0.378 Sum_probs=119.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++..+.+.. +.++. +..... ... ..+.+.+|||||+++++..+..+++.+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~----g~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a 77 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTV----GFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGT 77 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCc----ccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccC
Confidence 467899999999999999999998876632 22222 211111 111 237899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+++. .++.....++.+++..... .++|+++|+||+|+......+++.+.+.
T Consensus 78 ~~ii~v~D~t~~-~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~------------------ 136 (168)
T cd04149 78 QGLIFVVDSADR-DRIDEARQELHRIINDREM--RDALLLVFANKQDLPDAMKPHEIQEKLG------------------ 136 (168)
T ss_pred CEEEEEEeCCch-hhHHHHHHHHHHHhcCHhh--cCCcEEEEEECcCCccCCCHHHHHHHcC------------------
Confidence 999999999997 7799999998888764321 5789999999999976544444333321
Q ss_pred cCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
++.. ...+.++++||++|+ ++++++||.+
T Consensus 137 --------------~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 137 --------------LTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred --------------CCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 0010 234579999999999 9999999975
No 12
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=7e-28 Score=191.10 Aligned_cols=172 Identities=14% Similarity=0.159 Sum_probs=121.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|+.|||||||+.++..+.|...+.++... . +...+..++..+.+.+|||+|+++|+..+..|++.+|+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~----~-~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~ 77 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD----N-YSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNV 77 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEe----e-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCE
Confidence 479999999999999999999999886555544432 1 22234456777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+|+|||+++. .+++.+.. |+..+.... .++|+++|+||+|+.......+...... ...+..++.
T Consensus 78 ~ilvydit~~-~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~~~~~~~~~~~~~---------~~~v~~~~~- 142 (191)
T cd01875 78 FIICFSIASP-SSYENVRHKWHPEVCHHC----PNVPILLVGTKKDLRNDADTLKKLKEQG---------QAPITPQQG- 142 (191)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhhC----CCCCEEEEEeChhhhcChhhHHHHhhcc---------CCCCCHHHH-
Confidence 9999999998 88999974 666555432 5799999999999965322111000000 000000000
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
-.|+...+.++|++|||++|+ ++++++++.+.+
T Consensus 143 -----------~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 143 -----------GALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred -----------HHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 001111233589999999998 999999998753
No 13
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=8.3e-28 Score=188.99 Aligned_cols=161 Identities=22% Similarity=0.382 Sum_probs=121.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++..+.+.. .. |+.+.... .+... .+.+.+||+||+++++..+..|++.+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~----pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a 85 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TI----PTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-cc----CCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccC
Confidence 467899999999999999999998877632 22 33322111 12222 37899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+++. +++.....++..++..... .+.|++||+||+|+......+++.+.+.
T Consensus 86 ~~iI~V~D~s~~-~s~~~~~~~l~~~l~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~l~------------------ 144 (181)
T PLN00223 86 QGLIFVVDSNDR-DRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLG------------------ 144 (181)
T ss_pred CEEEEEEeCCcH-HHHHHHHHHHHHHhcCHhh--CCCCEEEEEECCCCCCCCCHHHHHHHhC------------------
Confidence 999999999997 7788888888887764322 5799999999999976655443333221
Q ss_pred cCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+..+ ...+.+++|||++|+ ++++++||.+.+
T Consensus 145 --------------l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 145 --------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred --------------ccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 1111 234567899999999 999999998865
No 14
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.6e-27 Score=190.65 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=121.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccC-CceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+||+++|++|||||||++++.++.+...+.++. +.......+..+ +..+.+.+|||||+++++..+..+++.+|+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~----~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~ 76 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATI----GVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVG 76 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce----eEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCE
Confidence 489999999999999999999988754433333 222222233444 566889999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCC--CCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVT--AHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|+|||+++. ++++.+..|+..+...... ...++|+++|+||+|+.. ....+++.+....
T Consensus 77 ~ilv~D~t~~-~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~---------------- 139 (201)
T cd04107 77 AIIVFDVTRP-STFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE---------------- 139 (201)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH----------------
Confidence 9999999997 8899998888777543211 126789999999999973 2233322222111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+...+++|||++|. ++++++||.+.+
T Consensus 140 -------------------~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 140 -------------------NGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred -------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122479999999998 999999998764
No 15
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=1e-27 Score=184.73 Aligned_cols=157 Identities=20% Similarity=0.384 Sum_probs=115.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|.+|||||||++++..+.+.. +.++...... .... ..+.+.+|||||++++...+..+++++|++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~------~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~ 71 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE------TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 71 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE------EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 379999999999999999998877642 3333222111 1112 237899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|||+|+++. .++.....++..++..... .+.|+++++||+|+......+++.+.+. ++.
T Consensus 72 i~v~D~~~~-~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~---------------- 130 (159)
T cd04150 72 IFVVDSNDR-ERIGEAREELQRMLNEDEL--RDAVLLVFANKQDLPNAMSAAEVTDKLG--LHS---------------- 130 (159)
T ss_pred EEEEeCCCH-HHHHHHHHHHHHHHhcHHh--cCCCEEEEEECCCCCCCCCHHHHHHHhC--ccc----------------
Confidence 999999997 7789998888888754321 4689999999999965444333222211 000
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+ ....+.+++|||++|+ ++++++||.+
T Consensus 131 -----------~--~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 131 -----------L--RNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred -----------c--CCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 0 0234578999999999 9999999975
No 16
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.2e-28 Score=186.57 Aligned_cols=162 Identities=18% Similarity=0.232 Sum_probs=132.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||+++.++..+.|......++ +.......+..+|..+.+++|||+|+++|+.....|+++|
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi----GIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI----GIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceE----EEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 356799999999999999999999999866555544 3344444567788889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+++++|||.++. .+|+.+..|+..+-.+.. .++|+++||||+|+...+.+ .+.-+.+..
T Consensus 86 ~gi~LvyDitne-~Sfeni~~W~~~I~e~a~---~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~---------------- 145 (207)
T KOG0078|consen 86 MGILLVYDITNE-KSFENIRNWIKNIDEHAS---DDVVKILVGNKCDLEEKRQVSKERGEALAR---------------- 145 (207)
T ss_pred CeeEEEEEccch-HHHHHHHHHHHHHHhhCC---CCCcEEEeeccccccccccccHHHHHHHHH----------------
Confidence 999999999997 899999999999988864 69999999999999874432 222233332
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+.|+|+|||+|. |++.+-.|.+.+
T Consensus 146 -------------------e~G~~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 146 -------------------EYGIKFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred -------------------HhCCeEEEccccCCCCHHHHHHHHHHHH
Confidence 346799999999998 888877776644
No 17
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=9.1e-28 Score=187.35 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=121.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|.+|||||||++++..+.+.....++.. ..+...+..++..+.+.+|||||+++++..+..+++.+|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~-----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ 76 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE-----DAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEG 76 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc-----ceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCE
Confidence 46899999999999999999999988654433332 1122234556777889999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+|+|||+++. .++..+..|+..+.+... ..++|+++|+||+|+......... ......+
T Consensus 77 ~ilv~d~~~~-~Sf~~~~~~~~~i~~~~~--~~~~piilvgNK~Dl~~~~~v~~~--~~~~~a~---------------- 135 (172)
T cd04141 77 FIICYSVTDR-HSFQEASEFKKLITRVRL--TEDIPLVLVGNKVDLESQRQVTTE--EGRNLAR---------------- 135 (172)
T ss_pred EEEEEECCch-hHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhhhhcCccCHH--HHHHHHH----------------
Confidence 9999999998 889999887766654321 267999999999998654322110 0111001
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. |+++++||.+.+
T Consensus 136 ----------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 136 ----------------EFNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ----------------HhCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 224689999999998 999999998654
No 18
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.95 E-value=1.7e-27 Score=184.83 Aligned_cols=157 Identities=15% Similarity=0.209 Sum_probs=119.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++..+.+.....++..... ....+..++..+.+.+|||||++++......+++.+|++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCA 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEE----EEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEE
Confidence 4899999999999999999998876544444333222 222223345558999999999999988888999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|+|+|+++. .++..+..|+..+.... .++|+++|+||+|+.......+.. .+.+
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~piiiv~nK~Dl~~~~~~~~~~-~~~~-------------------- 130 (166)
T cd00877 77 IIMFDVTSR-VTYKNVPNWHRDLVRVC----GNIPIVLCGNKVDIKDRKVKAKQI-TFHR-------------------- 130 (166)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC----CCCcEEEEEEchhcccccCCHHHH-HHHH--------------------
Confidence 999999997 78999999988887653 489999999999997332211111 1110
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++||++|+ +++++++|.+.+
T Consensus 131 ---------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 131 ---------------KKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred ---------------HcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 234579999999999 999999998764
No 19
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=1.7e-27 Score=183.51 Aligned_cols=159 Identities=15% Similarity=0.212 Sum_probs=119.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+.....++. +.. +......++..+.+.+|||||+++++..+..|++.+|++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~----~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~ 76 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI----EDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 76 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcc----hhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEE
Confidence 589999999999999999999988754333332 211 222344556667889999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|+++. .++..+..|+..+.+... ..+.|+++|+||+|+........ ......+
T Consensus 77 i~v~~~~~~-~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~----------------- 133 (162)
T cd04138 77 LCVFAINSR-KSFEDIHTYREQIKRVKD--SDDVPMVLVGNKCDLAARTVSSR---QGQDLAK----------------- 133 (162)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccceecHH---HHHHHHH-----------------
Confidence 999999997 778888888888876532 25889999999999975321111 1111111
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 134 ---------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 134 ---------------SYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ---------------HhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 123479999999998 999999998764
No 20
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=1.7e-27 Score=185.41 Aligned_cols=158 Identities=23% Similarity=0.369 Sum_probs=119.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++.++.+.. +.++...... ..... .+.+.+|||||+.+++..+..+++.+|+++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~------~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii 71 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE------TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVV 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE------EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEE
Confidence 68999999999999999999886532 2333222111 11222 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
||+|+++. +++.....|+..+++.... .+.|+++|+||+|+......+++.+.+.
T Consensus 72 ~V~D~s~~-~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~---------------------- 126 (169)
T cd04158 72 FVVDSSHR-DRVSEAHSELAKLLTEKEL--RDALLLIFANKQDVAGALSVEEMTELLS---------------------- 126 (169)
T ss_pred EEEeCCcH-HHHHHHHHHHHHHhcChhh--CCCCEEEEEeCcCcccCCCHHHHHHHhC----------------------
Confidence 99999997 7899999999999865321 4689999999999976544444333321
Q ss_pred cCCCCCCCeeecc--CCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 226 TLGIPGQAFSFSQ--CHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 226 ~~~~~~~~f~f~~--~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+.+ ....+.+++|||++|. ++++++||.+.+.
T Consensus 127 ----------~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 127 ----------LHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred ----------CccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 000 0224578999999999 9999999998654
No 21
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.95 E-value=1.1e-27 Score=185.43 Aligned_cols=161 Identities=16% Similarity=0.194 Sum_probs=121.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
++||+++|.+|||||||++++..+.+.....+ +.+.. +...+..++..+.+.+|||||++++...+..+++.+|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~----t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDP----TIEDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQG 75 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCC----cchhe-EEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCE
Confidence 46899999999999999999998876443322 22211 22334456666889999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|+++. .+++.+..|+..+..... ..+.|+++|+||+|+........ +......+
T Consensus 76 ~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~---------------- 134 (164)
T cd04175 76 FVLVYSITAQ-STFNDLQDLREQILRVKD--TEDVPMILVGNKCDLEDERVVGK--EQGQNLAR---------------- 134 (164)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECCcchhccEEcH--HHHHHHHH----------------
Confidence 9999999987 789999999888876432 26899999999999975432111 01111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|. ++++++||.+.+
T Consensus 135 ----------------~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 135 ----------------QWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred ----------------HhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 112579999999998 999999998765
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.95 E-value=1.8e-27 Score=184.65 Aligned_cols=158 Identities=19% Similarity=0.215 Sum_probs=120.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++..+.+.....++... ......+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 78 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV----EFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 78 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccce----eEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 68999999999999999999998875433333221 11122234456668899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
|+|||++++ ++++.+..|+..+..... .+.|+++|+||+|+...... ++..+. .+
T Consensus 79 ilv~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iiiv~nK~Dl~~~~~~~~~~~~~~----~~--------------- 135 (166)
T cd04122 79 LMVYDITRR-STYNHLSSWLTDARNLTN---PNTVIFLIGNKADLEAQRDVTYEEAKQF----AD--------------- 135 (166)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccCcCHHHHHHH----HH---------------
Confidence 999999998 889999999988765432 67899999999999754322 221111 11
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ ++++++++.+.+
T Consensus 136 -----------------~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 136 -----------------ENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred -----------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123589999999999 999998887654
No 23
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=2.5e-27 Score=186.44 Aligned_cols=163 Identities=22% Similarity=0.367 Sum_probs=120.9
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.+...+|+++|++|||||||++++..+.+.. +.++..... . .+... .+.+.+|||||+++++..+..+++.
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~-----~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ 84 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV-----E-TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQN 84 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce-----E-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcC
Confidence 3567899999999999999999998877643 222322211 1 12222 3789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++|+|+|+++. +++.....++..++..... .+.|++||+||+|+......+++.+.+..
T Consensus 85 ad~iI~v~D~t~~-~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~l~~---------------- 145 (182)
T PTZ00133 85 TNGLIFVVDSNDR-ERIGDAREELERMLSEDEL--RDAVLLVFANKQDLPNAMSTTEVTEKLGL---------------- 145 (182)
T ss_pred CCEEEEEEeCCCH-HHHHHHHHHHHHHHhCHhh--cCCCEEEEEeCCCCCCCCCHHHHHHHhCC----------------
Confidence 9999999999997 7788888888887654221 56899999999999765444433222110
Q ss_pred ccCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
... ..++.++++||++|+ ++++++||.+.+.
T Consensus 146 ----------------~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 146 ----------------HSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred ----------------CcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 000 234678899999999 9999999998653
No 24
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.95 E-value=2.4e-27 Score=183.13 Aligned_cols=160 Identities=16% Similarity=0.217 Sum_probs=120.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++..+.+...+.++ .+. .+...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t----~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 76 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPT----IED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGF 76 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCc----hhh-hEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEE
Confidence 68999999999999999999998875433332 221 1223344566667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|+++. .+++.+..|+..+..... ..+.|+++|+||+|+........ +.... +.+
T Consensus 77 ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~--~~~~~-~~~---------------- 134 (163)
T cd04136 77 VLVYSITSQ-SSFNDLQDLREQILRVKD--TENVPMVLVGNKCDLEDERVVSR--EEGQA-LAR---------------- 134 (163)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceecH--HHHHH-HHH----------------
Confidence 999999997 789999998888876432 25799999999999965322111 11111 110
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 135 ---------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 135 ---------------QWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ---------------HcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 112589999999999 999999998764
No 25
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=2.6e-27 Score=183.59 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=119.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
++|+++|++|||||||+++++++.+...+.++.... + .......+..+.+.+|||||++++......+++.+|++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~---~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 76 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT---Y--RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAF 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe---E--EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEE
Confidence 689999999999999999999998865444433211 1 12223344557899999999999998888999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|+|+|+++. +++..+..|+..+.........+.|+++|+||+|+......... .... ...
T Consensus 77 ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~--~~~~-~~~---------------- 136 (165)
T cd04140 77 ILVYSVTSK-QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSN--EGAA-CAT---------------- 136 (165)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHH--HHHH-HHH----------------
Confidence 999999997 78888888876665432211267999999999999653221110 0000 000
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++|++|||++|+ ++++++||.+..|
T Consensus 137 ---------------~~~~~~~e~SA~~g~~v~~~f~~l~~~~~ 165 (165)
T cd04140 137 ---------------EWNCAFMETSAKTNHNVQELFQELLNLEK 165 (165)
T ss_pred ---------------HhCCcEEEeecCCCCCHHHHHHHHHhccC
Confidence 123579999999998 9999999987643
No 26
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=3.2e-27 Score=182.27 Aligned_cols=158 Identities=22% Similarity=0.345 Sum_probs=115.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCc-ccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGST-HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+|+++|++|||||||++++.++.+ .....++....... .. ...+.+.+|||||+.+++..+..+++.+|++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~------~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES------FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE------EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEE
Confidence 589999999999999999998753 22222222211111 11 1236899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|+|+|+++. .++.....++..++........++|+++|+||+|+.......++.+.+.
T Consensus 73 i~v~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~--------------------- 130 (162)
T cd04157 73 IFVIDSSDR-LRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLG--------------------- 130 (162)
T ss_pred EEEEeCCcH-HHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhC---------------------
Confidence 999999997 6777888888887764322235899999999999976544333322211
Q ss_pred ccCCCCCCCeeecc-CCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 225 FTLGIPGQAFSFSQ-CHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 225 ~~~~~~~~~f~f~~-~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
... ....+.++++||++|+ ++++++||.+
T Consensus 131 -----------~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 131 -----------LENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred -----------CccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 000 1234579999999999 9999999975
No 27
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.95 E-value=3.5e-27 Score=182.17 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=121.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.+|+++|++|+|||||++++..+.+...+.++.. .......+...+..+.+.+|||+|++++...+..+++.+|++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG----VDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGI 76 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee----eEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEE
Confidence 4799999999999999999999988544443332 222223344556667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|||+++. ++++.+..|+..+.... ..+.|+++|+||+|+....... +....+.+
T Consensus 77 i~v~d~~~~-~sf~~~~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~------------------- 133 (161)
T cd04117 77 FLVYDISSE-RSYQHIMKWVSDVDEYA---PEGVQKILIGNKADEEQKRQVGDEQGNKLAK------------------- 133 (161)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCCCHHHHHHHHH-------------------
Confidence 999999997 88999999998887653 2579999999999997544321 11111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++|++|||++|. ++++++||.+.
T Consensus 134 ----------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 134 ----------------EYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ----------------HcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 122579999999998 99999999875
No 28
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.95 E-value=3.6e-27 Score=184.48 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=120.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|.+|||||||++++..+.|...+.+++... +...+..++..+.+.+|||+|++++...+..+++.+|++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~-----~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ 76 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-----YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 76 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeee-----eEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEE
Confidence 589999999999999999999998865554444321 222344567678999999999999999899999999999
Q ss_pred EEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
|+|||+++. ++++.+.. |+..+.... .+.|+++|+||+|+..... ..+.+... ....+..++..
T Consensus 77 ilv~d~~~~-~s~~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~---~~~~l~~~------~~~~v~~~~~~- 141 (175)
T cd01874 77 LVCFSVVSP-SSFENVKEKWVPEITHHC----PKTPFLLVGTQIDLRDDPS---TIEKLAKN------KQKPITPETGE- 141 (175)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhChh---hHHHhhhc------cCCCcCHHHHH-
Confidence 999999997 78998874 666665432 5799999999999864321 11111100 00000000000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.++...+.+.|++|||++|+ ++++++.+.+++
T Consensus 142 -----------~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 142 -----------KLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred -----------HHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 01111234689999999998 999999887753
No 29
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=2.3e-27 Score=191.88 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=123.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...+||+++|++|||||||++++..+.+...+.+++.. ......+..++..+.+.+|||||++++...+..|++.+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 86 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV----EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccce----eEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc
Confidence 46789999999999999999999998875544444332 22222233345557999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|||+++. .++..+..|+..+.... .+.|+++|+||+|+....... +.+ . +..
T Consensus 87 ~~~ilvfD~~~~-~s~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~---~~~-~-~~~------------- 143 (219)
T PLN03071 87 QCAIIMFDVTAR-LTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKA---KQV-T-FHR------------- 143 (219)
T ss_pred cEEEEEEeCCCH-HHHHHHHHHHHHHHHhC----CCCcEEEEEEchhhhhccCCH---HHH-H-HHH-------------
Confidence 999999999998 88999999998887642 679999999999996432111 111 0 000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. ++++++||.+.+
T Consensus 144 ------------------~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 144 ------------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred ------------------hcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 234579999999999 999999998765
No 30
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.95 E-value=4e-27 Score=182.52 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=120.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+...+.++.... +. ...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~-~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~ 77 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID---FK-VKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGF 77 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE---EE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEE
Confidence 589999999999999999999998754443333211 11 12233345557899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|+++. ++++.+..|+..+.... ..+.|+++|+||+|+...... ++..+ +.+
T Consensus 78 l~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~~------------------ 134 (165)
T cd01865 78 ILMYDITNE-ESFNAVQDWSTQIKTYS---WDNAQVILVGNKCDMEDERVVSSERGRQ-LAD------------------ 134 (165)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCCEEEEEECcccCcccccCHHHHHH-HHH------------------
Confidence 999999997 78999999998876543 257899999999999754321 21111 111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. ++++++++.+.+
T Consensus 135 -----------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 135 -----------------QLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred -----------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998765
No 31
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=2.7e-27 Score=186.22 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=120.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++..+.|...+.++. +.......+..++..+.+.+|||+|++++...+..+++.+|++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~----g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~i 76 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTL----GVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAI 76 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc----ceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEE
Confidence 489999999999999999999998865444433 3222333445567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|||+++. .++..+..|+..+..... ...| ++|+||+|+......+.... +.++.+++
T Consensus 77 ilv~D~t~~-~s~~~i~~~~~~~~~~~~---~~~p-ilVgnK~Dl~~~~~~~~~~~-~~~~~~~~--------------- 135 (182)
T cd04128 77 LFMFDLTRK-STLNSIKEWYRQARGFNK---TAIP-ILVGTKYDLFADLPPEEQEE-ITKQARKY--------------- 135 (182)
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhCC---CCCE-EEEEEchhccccccchhhhh-hHHHHHHH---------------
Confidence 999999997 889999999988876432 4566 67899999964322111111 11112211
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
++ ..++++++|||++|+ ++++++++.+.+
T Consensus 136 ------------a~-~~~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 136 ------------AK-AMKAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred ------------HH-HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 122579999999998 999999998753
No 32
>PTZ00369 Ras-like protein; Provisional
Probab=99.95 E-value=3.9e-27 Score=186.63 Aligned_cols=161 Identities=13% Similarity=0.192 Sum_probs=122.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...+||+++|++|||||||++++.++.+.....++. +. .+...+..++..+.+.+|||||++++...+..|++.+
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~----~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~ 77 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI----ED-SYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTG 77 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch----hh-EEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcC
Confidence 356899999999999999999999988754433332 21 1223344566668899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH--HHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE--FIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. ++++.+..|+..+.+... ..+.|+++|+||+|+....... +..+. . +
T Consensus 78 d~iilv~D~s~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~i~~~~~~~~-~---~------------ 138 (189)
T PTZ00369 78 QGFLCVYSITSR-SSFEEIASFREQILRVKD--KDRVPMILVGNKCDLDSERQVSTGEGQEL-A---K------------ 138 (189)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHHH-H---H------------
Confidence 999999999998 789999998888876432 2588999999999986533211 11111 1 1
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. ++++++||.+.+
T Consensus 139 --------------------~~~~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 139 --------------------SFGIPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred --------------------HhCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 113479999999999 999999998764
No 33
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=3.1e-27 Score=184.01 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=121.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|.+|||||||++++.++.|...+.++.. .......+..+|..+.+++|||||++++...+..+++.+|+++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 77 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIG----VDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAII 77 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee----eEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEE
Confidence 799999999999999999999988655544433 2222233445666689999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|+++. +++..+..|+..+..... ..+.|+++|+||+|+..........+......+
T Consensus 78 lv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~------------------ 136 (170)
T cd04108 78 IVFDLTDV-ASLEHTRQWLEDALKEND--PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA------------------ 136 (170)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCeEEEEEEChhcCccccccccHHHHHHHHH------------------
Confidence 99999996 789999999988876532 145789999999999654321111111111111
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.+++++||++|. +++++++|.+.+
T Consensus 137 --------------~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 137 --------------EMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred --------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 113478999999998 999999988754
No 34
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=4.7e-27 Score=184.51 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=99.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...+||+++|++|||||||++++..+.|...+.+++... +...+..++..+.+.+|||+|+++|......+++.+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~-----~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a 77 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-----YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 77 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeee-----eEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCC
Confidence 456799999999999999999999998866555544321 223355677778999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|++|+|||+++. .+++.+ ..|+..+.... ++.|+++|+||+|+..
T Consensus 78 d~~ilvyDit~~-~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 123 (182)
T cd04172 78 DAVLICFDISRP-ETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 123 (182)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHHC----CCCCEEEEeEChhhhc
Confidence 999999999998 889997 67887776542 5799999999999954
No 35
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=5.8e-27 Score=183.57 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=120.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+.||+++|++|||||||++++.++.|...+.++.. .. +...+.+++..+.+.+|||+|++.+......+++.+|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~----~~-~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ 75 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVF----EN-YTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDA 75 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceE----EE-EEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCE
Confidence 36899999999999999999999988655544432 22 22334556777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+|+|||+++. ++++.+ ..|+..+.... ++.|+++|+||+||..... ...+ +... ....++.++..
T Consensus 76 ~ilvfdit~~-~Sf~~~~~~w~~~i~~~~----~~~~iilVgnK~DL~~~~~--~~~~-----~~~~--~~~~v~~~e~~ 141 (178)
T cd04131 76 VLICFDISRP-ETLDSVLKKWRGEIQEFC----PNTKVLLVGCKTDLRTDLS--TLME-----LSHQ--RQAPVSYEQGC 141 (178)
T ss_pred EEEEEECCCh-hhHHHHHHHHHHHHHHHC----CCCCEEEEEEChhhhcChh--HHHH-----HHhc--CCCCCCHHHHH
Confidence 9999999998 889986 68887776643 6899999999999964211 1000 0000 00001000000
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC--chhHHHHHHhh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQ 265 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~ 265 (268)
.|+...+...|+||||++|+ ++++++.+.+.
T Consensus 142 ------------~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 142 ------------AIAKQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred ------------HHHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 02221222379999999985 99998887763
No 36
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=6.4e-27 Score=182.86 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=118.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.+++++|++|||||||+.++..+.|...+.++... .+......++..+.+.+|||||++++...+..+++.+|++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-----~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-----NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 76 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-----eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEE
Confidence 58999999999999999999999886555444322 1222334567678999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC-HHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
|+|||+++. +++..+. .|+..+.... .+.|+++|+||+|+..... .+.+.+. ....++..+..
T Consensus 77 ilv~d~~~~-~sf~~~~~~~~~~~~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~----------~~~~v~~~~~~ 141 (174)
T cd01871 77 LICFSLVSP-ASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEK----------KLTPITYPQGL 141 (174)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhccChhhHHHHhhc----------cCCCCCHHHHH
Confidence 999999997 8899886 4666555432 5899999999999964321 1111000 00000000000
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.+....+.++|+||||++|+ ++++++.+.+.
T Consensus 142 ------------~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 142 ------------AMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ------------HHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 01111233589999999999 99999998764
No 37
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.95 E-value=5.6e-27 Score=182.07 Aligned_cols=159 Identities=18% Similarity=0.248 Sum_probs=122.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|+|||||++++.++.+...+.++. +.......+...+..+.+.+|||||++++......+++.+|+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~----~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~ 78 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI----GIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 78 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc----cceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCE
Confidence 4799999999999999999999998755443333 222222234455666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+.. +
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~-------------- 136 (167)
T cd01867 79 IILVYDITDE-KSFENIRNWMRNIEEHA---SEDVERMLVGNKCDMEEKRVVSKEEGEALA----D-------------- 136 (167)
T ss_pred EEEEEECcCH-HHHHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCCHHHHHHHH----H--------------
Confidence 9999999997 78999999998887653 26899999999999975332 22211111 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. ++++++++.+.+
T Consensus 137 ------------------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 137 ------------------EYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998764
No 38
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=6.4e-27 Score=181.74 Aligned_cols=159 Identities=22% Similarity=0.332 Sum_probs=119.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
+|+++|++|||||||++++.++ +...+.++...... .+...+ +.+++||+||+..++..+..|++.+|++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~------~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii 71 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT------KLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLV 71 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE------EEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEE
Confidence 4899999999999999999976 44333344332211 122233 78999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|||+++. .++.....|+..++..... .++|+++|+||+|+....+..++.+.+. ++.+
T Consensus 72 ~V~D~s~~-~s~~~~~~~l~~l~~~~~~--~~~piliv~NK~Dl~~~~~~~~i~~~~~--l~~~---------------- 130 (167)
T cd04161 72 FVVDSSDD-DRVQEVKEILRELLQHPRV--SGKPILVLANKQDKKNALLGADVIEYLS--LEKL---------------- 130 (167)
T ss_pred EEEECCch-hHHHHHHHHHHHHHcCccc--cCCcEEEEEeCCCCcCCCCHHHHHHhcC--cccc----------------
Confidence 99999997 6899999999998875322 5789999999999987766655544432 1110
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccC------C-chhHHHHHHh
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTG------E-ISQVEQFIRE 264 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g------~-i~~l~~~l~~ 264 (268)
.......+++++|||++| + +++.++||.+
T Consensus 131 ----------~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 131 ----------VNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred ----------cCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 001123578999999998 5 9999999975
No 39
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=4.6e-27 Score=181.72 Aligned_cols=160 Identities=16% Similarity=0.239 Sum_probs=121.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+++|+++|.+|+|||||++++..+.+.....++. +.+ +...+..++..+.+++|||||++++...+..|++.+|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~----~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI----EDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQG 75 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch----hhe-EEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCE
Confidence 3689999999999999999999988755433332 212 22334456666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+++|+|+++. +++..+..|+..+..... ..++|+++|+||+|+........ ....+.+
T Consensus 76 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~------------------ 134 (163)
T cd04176 76 FIVVYSLVNQ-QTFQDIKPMRDQIVRVKG--YEKVPIILVGNKVDLESEREVSSAEGRALAE------------------ 134 (163)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcCccCHHHHHHHHH------------------
Confidence 9999999997 789999998888876432 26899999999999865332111 1111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+++++|||++|. ++++++|+.+.+
T Consensus 135 -----------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 135 -----------------EWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred -----------------HhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 112479999999998 999999998765
No 40
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.95 E-value=4.8e-27 Score=181.76 Aligned_cols=161 Identities=14% Similarity=0.235 Sum_probs=120.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++.++.+.....++. . ..+......++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~----~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ 75 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTI----E-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGF 75 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCch----h-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEE
Confidence 489999999999999999999988754333322 1 11222344456668899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|+++. ++++.+..|...+.+... ..+.|+++|+||+|+........ +......+
T Consensus 76 i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~pii~v~nK~Dl~~~~~~~~--~~~~~~~~----------------- 133 (164)
T smart00173 76 LLVYSITDR-QSFEEIKKFREQILRVKD--RDDVPIVLVGNKCDLESERVVST--EEGKELAR----------------- 133 (164)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceEcH--HHHHHHHH-----------------
Confidence 999999997 788888888877766432 25789999999999975432111 11111111
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..++++++|||++|. +++++++|.+.+.
T Consensus 134 ---------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 134 ---------------QWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred ---------------HcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 112589999999998 9999999998764
No 41
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=7.7e-27 Score=180.88 Aligned_cols=163 Identities=15% Similarity=0.208 Sum_probs=120.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++|+|||||++++..+.+.....++ .+.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d 77 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNT----IGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSAN 77 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCc----cceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCC
Confidence 3579999999999999999999988774433222 222222223445565578999999999999988999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|++++ .+++.+..|+..+.... ..+.|+++|+||+|+....... .+......+.
T Consensus 78 ~~llv~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~-------------- 137 (165)
T cd01864 78 GAIIAYDITRR-SSFESVPHWIEEVEKYG---ASNVVLLLIGNKCDLEEQREVL--FEEACTLAEK-------------- 137 (165)
T ss_pred EEEEEEECcCH-HHHHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccccC--HHHHHHHHHH--------------
Confidence 99999999997 78899999998887643 2689999999999997543211 0111110110
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....++++||++|. ++++++++.+.+
T Consensus 138 -----------------~~~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 138 -----------------NGMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred -----------------cCCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 222468999999998 999999998764
No 42
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=5.6e-27 Score=185.66 Aligned_cols=171 Identities=13% Similarity=0.096 Sum_probs=120.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+...+.++.. .. +...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~----~~-~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ 75 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVF----EN-YVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVI 75 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcce----ee-eEEEEEECCEEEEEEEEECCCChhccccccccccCCCEE
Confidence 4899999999999999999999988654433332 11 122234456668899999999999998888999999999
Q ss_pred EEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
|+|||+++. ++++.+. .|+..+.... .+.|+++|+||+|+.......+....... ..+..+
T Consensus 76 ilv~dv~~~-~sf~~~~~~~~~~i~~~~----~~~piilvgNK~Dl~~~~~~~~~~~~~~~---------~~v~~~---- 137 (189)
T cd04134 76 MLCFSVDSP-DSLENVESKWLGEIREHC----PGVKLVLVALKCDLREARNERDDLQRYGK---------HTISYE---- 137 (189)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccChhhHHHHhhccC---------CCCCHH----
Confidence 999999997 7888876 5777766532 58999999999999765433222111000 000000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+....+.++|++|||++|+ ++++++||.+.+
T Consensus 138 --------~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 138 --------EGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred --------HHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 00001111234689999999998 999999998754
No 43
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=4.8e-27 Score=182.20 Aligned_cols=158 Identities=18% Similarity=0.280 Sum_probs=121.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++.++.+...+.++. +.......+...+..+.+.+|||||++++...+..+++.+|++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~i 78 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI----GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 78 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----ceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEE
Confidence 689999999999999999999988754333332 2222223344456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
|+|+|+++. +++..+..|+..+..... .+.|+++|+||+|+...... ++.. .+.+
T Consensus 79 i~v~d~~~~-~s~~~l~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~-~~~~------------------ 135 (166)
T cd01869 79 IIVYDVTDQ-ESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLTDKRVVDYSEAQ-EFAD------------------ 135 (166)
T ss_pred EEEEECcCH-HHHHhHHHHHHHHHHhCC---CCCcEEEEEEChhcccccCCCHHHHH-HHHH------------------
Confidence 999999997 789999999988866432 57899999999998654322 1111 1111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 136 -----------------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 136 -----------------ELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred -----------------HcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 224589999999998 999999998765
No 44
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=3.7e-27 Score=186.88 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=119.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
+|+++|.+|||||||++++..+.|.....++. +.. +......++..+.+.+|||||+++++..+..+++.+|++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~----~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 75 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI----EDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFI 75 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch----Hhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEE
Confidence 58999999999999999999888754333332 211 1222345666678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|||+++. .++..+..|+..+.........+.|+++|+||+|+......... ...+..+
T Consensus 76 lv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~--~~~~~~~------------------ 134 (190)
T cd04144 76 LVYSITSR-STFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTE--EGAALAR------------------ 134 (190)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHH--HHHHHHH------------------
Confidence 99999997 78999999988876543211257899999999999653322110 0111111
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++++.+.+
T Consensus 135 --------------~~~~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 135 --------------RLGCEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred --------------HhCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998753
No 45
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=7e-27 Score=185.47 Aligned_cols=159 Identities=19% Similarity=0.281 Sum_probs=119.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++..+.+... ...++.+.......+.+++..+.+.||||||++++......+++.+|++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 77 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG---NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHAL 77 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc---CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEE
Confidence 4899999999999999999999887432 1122222222222344566668999999999999988889999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
|+|+|+++. ++++.+..|+..+.... ..+.|+++|+||+|+..... .++.. .+. +
T Consensus 78 i~v~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~---~--------------- 134 (191)
T cd04112 78 LLLYDITNK-ASFDNIRAWLTEIKEYA---QEDVVIMLLGNKADMSGERVVKREDGE-RLA---K--------------- 134 (191)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEEcccchhccccCHHHHH-HHH---H---------------
Confidence 999999997 78999999988887653 25789999999999964322 11111 111 1
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++|+++||++|+ +++++++|.+.+
T Consensus 135 -----------------~~~~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 135 -----------------EYGVPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred -----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998765
No 46
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=6.6e-27 Score=182.82 Aligned_cols=160 Identities=32% Similarity=0.491 Sum_probs=129.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|+.||||||+++++..+.... ..+|...+... +...+ +.+.+||.+|+..++..|..|++.+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~~------i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~ 82 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIEE------IKYKG--YSLTIWDLGGQESFRPLWKSYFQNA 82 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEEE------EEETT--EEEEEEEESSSGGGGGGGGGGHTTE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccce------eeeCc--EEEEEEeccccccccccceeecccc
Confidence 678999999999999999999999876432 33333322222 22234 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|||+|+++. +.+.+....+..++.+... .++|++|++||+|+......+++.+.+..
T Consensus 83 ~~iIfVvDssd~-~~l~e~~~~L~~ll~~~~~--~~~piLIl~NK~D~~~~~~~~~i~~~l~l----------------- 142 (175)
T PF00025_consen 83 DGIIFVVDSSDP-ERLQEAKEELKELLNDPEL--KDIPILILANKQDLPDAMSEEEIKEYLGL----------------- 142 (175)
T ss_dssp SEEEEEEETTGG-GGHHHHHHHHHHHHTSGGG--TTSEEEEEEESTTSTTSSTHHHHHHHTTG-----------------
T ss_pred ceeEEEEecccc-eeecccccchhhhcchhhc--ccceEEEEeccccccCcchhhHHHhhhhh-----------------
Confidence 999999999997 7799999999999987543 68999999999999887777766655431
Q ss_pred cCcccCCCCCCCeeeccC--CceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQC--HNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~--~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+ ...+.++.|||++|+ +.+.++||.+.
T Consensus 143 ---------------~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 143 ---------------EKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp ---------------GGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ---------------hhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 111 356889999999999 99999999875
No 47
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=6.6e-27 Score=182.88 Aligned_cols=161 Identities=22% Similarity=0.374 Sum_probs=120.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|+|||||++++..+.+.. ..++....... ...++ +.+.+|||||+..+...+..+++.+
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~------~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~ 83 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE------IVYKN--IRFLMWDIGGQESLRSSWNTYYTNT 83 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE------EEECC--eEEEEEECCCCHHHHHHHHHHhhcC
Confidence 357899999999999999999999887743 23333322221 12222 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. +++.....++..++..... .+.|+++++||+|+....+.+++.+.+.. ..
T Consensus 84 d~vi~V~D~s~~-~~~~~~~~~l~~~~~~~~~--~~~p~viv~NK~Dl~~~~~~~~i~~~l~~--~~------------- 145 (174)
T cd04153 84 DAVILVIDSTDR-ERLPLTKEELYKMLAHEDL--RKAVLLVLANKQDLKGAMTPAEISESLGL--TS------------- 145 (174)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhchhh--cCCCEEEEEECCCCCCCCCHHHHHHHhCc--cc-------------
Confidence 999999999997 6788888888888765321 57999999999999764444433332210 00
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
. ...++++++|||++|+ ++++++||.++
T Consensus 146 --------------~--~~~~~~~~~~SA~~g~gi~e~~~~l~~~ 174 (174)
T cd04153 146 --------------I--RDHTWHIQGCCALTGEGLPEGLDWIASR 174 (174)
T ss_pred --------------c--cCCceEEEecccCCCCCHHHHHHHHhcC
Confidence 0 0234689999999998 99999999763
No 48
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=1.1e-26 Score=179.72 Aligned_cols=161 Identities=14% Similarity=0.224 Sum_probs=120.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
..||+++|++|+|||||++++.++.+..... ++.+.. +......++..+.+.+|||||++++...+..+++.+|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~----~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 76 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYD----PTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEG 76 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccC----CCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCE
Confidence 4699999999999999999999887643332 222222 22223456666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+........ +...+..+
T Consensus 77 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~Dl~~~~~~~~--~~~~~~~~---------------- 135 (164)
T cd04145 77 FLLVFSVTDR-GSFEEVDKFHTQILRVKD--RDEFPMILVGNKADLEHQRKVSR--EEGQELAR---------------- 135 (164)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHhC--CCCCCEEEEeeCccccccceecH--HHHHHHHH----------------
Confidence 9999999997 789999999888776432 25889999999999975432111 11111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 136 ----------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 136 ----------------KLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ----------------HcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 123478999999998 999999998765
No 49
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=8.1e-27 Score=188.43 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=120.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCC-ceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKG-KIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+||+++|++|||||||+++|.++.+...+.++ .+...+...+.+++ ..+.+.+|||||++.+...+..+++.+|+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T----~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ 76 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQT----IGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHA 76 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc----eeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCE
Confidence 48999999999999999999998875544333 33222333333333 45789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+|+|||+++. ++++.+..|+..+.........+.|+++|+||+|+....... .+......+
T Consensus 77 iilV~D~t~~-~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~~---------------- 137 (215)
T cd04109 77 VFLVYDVTNS-QSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK--DDKHARFAQ---------------- 137 (215)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC--HHHHHHHHH----------------
Confidence 9999999997 789999988888876532212467899999999996432211 111111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 138 ----------------~~~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 138 ----------------ANGMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred ----------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123478999999999 999999998764
No 50
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=8.9e-27 Score=181.98 Aligned_cols=160 Identities=22% Similarity=0.357 Sum_probs=118.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.+..+. .+.++.+. ... .+..++ +.+.+|||||++.++..+..+++.+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-----~~~~t~g~-~~~-~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-----TISPTLGF-QIK-TLEYEG--YKLNIWDVGGQKTLRPYWRNYFEST 82 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-----CcCCcccc-ceE-EEEECC--EEEEEEECCCCHHHHHHHHHHhCCC
Confidence 46789999999999999999999987542 12232221 111 122233 6899999999999998999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+...
T Consensus 83 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~---------------- 143 (173)
T cd04154 83 DALIWVVDSSDR-LRLDDCKRELKELLQEER--LAGATLLILANKQDLPGALSEEEIREALELD---------------- 143 (173)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECcccccCCCHHHHHHHhCcc----------------
Confidence 999999999997 678888888888875422 2689999999999997655444333322110
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
......+++++|||++|+ ++++++||..
T Consensus 144 ---------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 144 ---------------KISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ---------------ccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 001345789999999999 9999999864
No 51
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=1.2e-26 Score=178.96 Aligned_cols=159 Identities=15% Similarity=0.203 Sum_probs=120.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||+++++++++... ..++.+.......+..++..+.+.+|||||+..+...+..+++.+|++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~i 76 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ----YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVA 76 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc----CCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 4899999999999999999999887442 233333333334444556557899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC-HHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|+|++++ ++++.+..|+..+..... .+.|+++|+||+|+..... ..+....+. +
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iilv~nK~D~~~~~~~~~~~~~~~~---~---------------- 133 (161)
T cd01861 77 VVVYDITNR-QSFDNTDKWIDDVRDERG---NDVIIVLVGNKTDLSDKRQVSTEEGEKKA---K---------------- 133 (161)
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhCC---CCCEEEEEEEChhccccCccCHHHHHHHH---H----------------
Confidence 999999997 789999999988876432 3699999999999953321 111111111 1
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 134 ----------------~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 134 ----------------ELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred ----------------HhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 223679999999999 999999998754
No 52
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.95 E-value=1.5e-26 Score=180.12 Aligned_cols=164 Identities=14% Similarity=0.189 Sum_probs=123.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...+|+++|++|||||||++++.++.+.....++. +.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d 79 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI----GVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSD 79 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCce----eeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCC
Confidence 45799999999999999999999988754333332 22222334455677789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. ++++.+..|...+...... ...+.|+++|+||+|+.... ..++..+...+
T Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 142 (170)
T cd04116 80 CCLLTFAVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE---------------- 142 (170)
T ss_pred EEEEEEECCCH-HHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----------------
Confidence 99999999997 7889998888887764321 12578999999999996322 22222222111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+..+++++||++|+ ++++++++.+.+
T Consensus 143 -------------------~~~~~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 143 -------------------NGDYPYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred -------------------CCCCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 122478999999999 999999998753
No 53
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.95 E-value=9.6e-27 Score=182.86 Aligned_cols=167 Identities=20% Similarity=0.294 Sum_probs=120.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccce--EEeecc----cccCCceeeEEEEeCCCCCCchhhHhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDT--FVLHSE----STKKGKIKPVHLVDVPGHSRLRPKLDE 136 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~i~DtpG~~~~~~~~~~ 136 (268)
...||+++|++|||||||++++..+.+.....++....... ..+... ....+..+.+.+|||||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 34799999999999999999999988865544443222111 111100 011234578999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+++.+|++++|+|+++. +++..+..|+..+..... ..+.|+++|+||+|+........ +......+
T Consensus 83 ~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~v~~--~~~~~~~~--------- 148 (180)
T cd04127 83 FFRDAMGFLLIFDLTNE-QSFLNVRNWMSQLQTHAY--CENPDIVLCGNKADLEDQRQVSE--EQAKALAD--------- 148 (180)
T ss_pred HhCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEeCccchhcCccCH--HHHHHHHH---------
Confidence 99999999999999997 889999999988876432 25789999999999975432211 11111111
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 149 -----------------------~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 149 -----------------------KYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -----------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998753
No 54
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.5e-26 Score=182.43 Aligned_cols=169 Identities=21% Similarity=0.331 Sum_probs=123.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.. ..++..++.... ...+ +.+.+|||||+..++..+..|++.+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~~~------~~~~--~~~~~~D~~G~~~~~~~~~~~~~~a 85 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEEL------AIGN--IKFTTFDLGGHQQARRLWKDYFPEV 85 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceEEE------EECC--EEEEEEECCCCHHHHHHHHHHhCCC
Confidence 567999999999999999999999886632 223333332221 2233 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....++..++.... ..+.|+++|+||+|+....+.+++.+.+.- .+. ..+
T Consensus 86 d~ii~vvD~~~~-~~~~~~~~~l~~l~~~~~--~~~~piliv~NK~Dl~~~~~~~~i~~~l~l--~~~--~~~------- 151 (184)
T smart00178 86 NGIVYLVDAYDK-ERFAESKRELDALLSDEE--LATVPFLILGNKIDAPYAASEDELRYALGL--TNT--TGS------- 151 (184)
T ss_pred CEEEEEEECCcH-HHHHHHHHHHHHHHcChh--hcCCCEEEEEeCccccCCCCHHHHHHHcCC--Ccc--ccc-------
Confidence 999999999997 678888888888776432 157899999999999766566655544320 000 000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. ..-.+.+.+++|||++|+ ++++++||.+++
T Consensus 152 -----~~--------~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 152 -----KG--------KVGVRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred -----cc--------ccCCceeEEEEeecccCCChHHHHHHHHhhC
Confidence 00 001346789999999999 999999998753
No 55
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=1.5e-26 Score=184.71 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=122.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||++++.++.+...+.++. +.......+...+..+.+.+|||||++.++..+..+++.++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~ 80 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI----GVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTH 80 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccc----cceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCc
Confidence 46799999999999999999999988754343333 22222233444566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. ++++.+..|+..+.... ...|++||+||+|+...... ++..+ +. +
T Consensus 81 ~iilv~D~~~~-~s~~~~~~~~~~i~~~~----~~~piivVgNK~Dl~~~~~~~~~~~~~-~~---~------------- 138 (199)
T cd04110 81 GVIVVYDVTNG-ESFVNVKRWLQEIEQNC----DDVCKVLVGNKNDDPERKVVETEDAYK-FA---G------------- 138 (199)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccccCHHHHHH-HH---H-------------
Confidence 99999999997 78999999998876643 67899999999999754322 11111 11 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. |+++++||.+.+
T Consensus 139 -------------------~~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 139 -------------------QMGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred -------------------HcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
No 56
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=1.7e-26 Score=178.86 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=121.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||++++.++.+.....++ .+.......+..++..+.+.+|||||++++...+..+++.+++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 78 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKST----IGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVG 78 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----cceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCE
Confidence 468999999999999999999998874433332 3322233334456666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+. . +
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~pi~vv~nK~Dl~~~~~~~~~~~~~~-~---~-------------- 136 (165)
T cd01868 79 ALLVYDITKK-QTFENVERWLKELRDHAD---SNIVIMLVGNKSDLRHLRAVPTEEAKAF-A---E-------------- 136 (165)
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEECccccccccCCHHHHHHH-H---H--------------
Confidence 9999999987 789999999888876532 4689999999999875322 1111111 1 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||++|. +++++++|.+.+
T Consensus 137 ------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 137 ------------------KNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ------------------HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 123579999999998 999999998765
No 57
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=2.1e-26 Score=186.53 Aligned_cols=119 Identities=17% Similarity=0.172 Sum_probs=98.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++|||||||++++..+.|...+.+++... +...+..++..+.+.||||+|+++|......|++.+|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~-----~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad 86 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN-----YTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 86 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeee-----eEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCc
Confidence 45799999999999999999999998876555554322 1223556777789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 143 GIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
++|+|||+++. .++..+ ..|+..+.... ++.|+++|+||+|+..
T Consensus 87 ~vIlVyDit~~-~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 131 (232)
T cd04174 87 AVLLCFDISRP-ETVDSALKKWKAEIMDYC----PSTRILLIGCKTDLRT 131 (232)
T ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHHHhC----CCCCEEEEEECccccc
Confidence 99999999998 889874 78887776542 5789999999999864
No 58
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.95 E-value=2.3e-26 Score=177.57 Aligned_cols=156 Identities=16% Similarity=0.218 Sum_probs=117.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++..+.+.....++.... ........++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALT----LYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHAC 76 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeE----EEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEE
Confidence 489999999999999999999988754433333222 1222233456668899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|+|+|+++. .++..+..|+..+.... ++.|+++|+||+|+.... . +.... +.
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~p~ivv~nK~Dl~~~~-~----~~~~~-~~----------------- 128 (161)
T cd04124 77 ILVFDVTRK-ITYKNLSKWYEELREYR----PEIPCIVVANKIDLDPSV-T----QKKFN-FA----------------- 128 (161)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC----CCCcEEEEEECccCchhH-H----HHHHH-HH-----------------
Confidence 999999997 77888888888876532 579999999999984321 1 11110 00
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ..+++++++||++|. ++++++.+.+.+
T Consensus 129 -------------~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 129 -------------E-KHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred -------------H-HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 123579999999998 999999888754
No 59
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.5e-26 Score=179.42 Aligned_cols=164 Identities=20% Similarity=0.339 Sum_probs=116.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+|+++|++|||||||++++.+...... ....+.++.+.... .+.+++ ..+.+|||||+.++...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432100 01111122111111 122233 689999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|+++. .++.....++..+..... ..+.|+++++||+|+......+++.+.+....+.+
T Consensus 77 ~v~vvd~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~-------------- 139 (167)
T cd04160 77 IIYVIDSTDR-ERFEESKSALEKVLRNEA--LEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEI-------------- 139 (167)
T ss_pred EEEEEECchH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEEccccccCCCHHHHHHHhccccccc--------------
Confidence 9999999987 678888888888876432 25799999999999976655544443333211100
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
....++++++||++|+ ++++++||.++
T Consensus 140 ---------------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 140 ---------------GRRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred ---------------cCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence 0234689999999999 99999999764
No 60
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=2.2e-26 Score=178.36 Aligned_cols=161 Identities=20% Similarity=0.282 Sum_probs=121.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+...+.++.. .......+..++..+.+++|||||++++...+..+++.+|++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIG----IDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGV 76 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc----eeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEE
Confidence 4899999999999999999999987554443332 222222334456668999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCc--cCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTV--VKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|+|+|+++. .++..+..|+..+...... ...+.|+++|+||+|+.... ..++..+...
T Consensus 77 ilv~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 138 (168)
T cd04119 77 LLVYDVTDR-QSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE----------------- 138 (168)
T ss_pred EEEEECCCH-HHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----------------
Confidence 999999997 7888999998888765320 01468999999999996422 2222211111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 139 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 -------------------SKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred -------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
No 61
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=3.5e-26 Score=181.29 Aligned_cols=173 Identities=24% Similarity=0.366 Sum_probs=123.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.. +.++..+.... +.+++ ..+.+||+||+..+...+..+++.+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~T~~~~~~~------i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~a 87 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSEE------LTIGN--IKFKTFDLGGHEQARRLWKDYFPEV 87 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccCcceEE------EEECC--EEEEEEECCCCHHHHHHHHHHhccC
Confidence 467999999999999999999999887632 33444443322 22334 6889999999999888889999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....++..+..... ..+.|+++++||+|+......+++.+.+.. .+...+
T Consensus 88 d~iilV~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~------- 153 (190)
T cd00879 88 DGIVFLVDAADP-ERFQESKEELDSLLSDEE--LANVPFLILGNKIDLPGAVSEEELRQALGL----YGTTTG------- 153 (190)
T ss_pred CEEEEEEECCcH-HHHHHHHHHHHHHHcCcc--ccCCCEEEEEeCCCCCCCcCHHHHHHHhCc----cccccc-------
Confidence 999999999987 678888888888876432 257999999999999765454444333321 000000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+...+ -......+++++|||++|+ ++++++||.+++
T Consensus 154 -~~~~~--------~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 154 -KGVSL--------KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred -ccccc--------cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 00000 0001245689999999999 999999998764
No 62
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.2e-27 Score=175.23 Aligned_cols=160 Identities=17% Similarity=0.201 Sum_probs=127.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....|++++|+.|||||+|+.+++.+.|......|+... .-...++++++.++++||||+|++.+++....|++.+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGve----fg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a 79 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVE----FGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGA 79 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeee----eceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccC
Confidence 356799999999999999999999999855444444332 2234466788889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
.++|+|||.+.. ++|..+..||.++.++.. ++..+++++||+||...+.+.. --+.+.+
T Consensus 80 ~GalLVydit~r-~sF~hL~~wL~D~rq~~~---~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~---------------- 139 (216)
T KOG0098|consen 80 AGALLVYDITRR-ESFNHLTSWLEDARQHSN---ENMVIMLIGNKSDLEARREVSKEEGEAFAR---------------- 139 (216)
T ss_pred cceEEEEEccch-hhHHHHHHHHHHHHHhcC---CCcEEEEEcchhhhhccccccHHHHHHHHH----------------
Confidence 999999999998 899999999999999864 8999999999999987653321 1112221
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
.....|+++||++++ +++.+.-+..
T Consensus 140 -------------------ehgLifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 140 -------------------EHGLIFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred -------------------HcCceeehhhhhhhhhHHHHHHHHHH
Confidence 234568899999998 8888665544
No 63
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=2.7e-26 Score=177.04 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=119.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++.++.+.....++... .........++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~ 76 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGV----EFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGA 76 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee----eEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEE
Confidence 48999999999999999999998875433333322 22222233456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|+++. .++..+..|+..+.... .++.|+++|+||+|+..... .++......
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------------------- 133 (161)
T cd04113 77 LLVYDITNR-TSFEALPTWLSDARALA---SPNIVVILVGNKSDLADQREVTFLEASRFAQ------------------- 133 (161)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEEchhcchhccCCHHHHHHHHH-------------------
Confidence 999999997 78889999988776543 26899999999999975322 112111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. ++++++++.+.+
T Consensus 134 -----------------~~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 134 -----------------ENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred -----------------HcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 112589999999999 999999998753
No 64
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=6.8e-27 Score=171.00 Aligned_cols=160 Identities=23% Similarity=0.240 Sum_probs=124.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...||+++|.+|+|||||+-+++.+.|.+...+++. -......+.++|..+++.||||+|+++|+.+...|++++.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIG----vDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIG----VDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceee----eeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 357999999999999999999999998664444432 2333345778899999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|||++.. ++|..+..|+.++-.+.. .+++-.++|+||+|....+.+ ++=.+
T Consensus 86 GiIlVYDVT~R-dtf~kLd~W~~Eld~Yst--n~diikmlVgNKiDkes~R~V~reEG~k-------------------- 142 (209)
T KOG0080|consen 86 GIILVYDVTSR-DTFVKLDIWLKELDLYST--NPDIIKMLVGNKIDKESERVVDREEGLK-------------------- 142 (209)
T ss_pred eeEEEEEccch-hhHHhHHHHHHHHHhhcC--CccHhHhhhcccccchhcccccHHHHHH--------------------
Confidence 99999999998 889999999999877654 267778899999997643322 21111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
|+. ..++-|+||||++.+ ++..++-+.+.
T Consensus 143 ---------------fAr-~h~~LFiE~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 143 ---------------FAR-KHRCLFIECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred ---------------HHH-hhCcEEEEcchhhhccHHHHHHHHHHH
Confidence 111 345689999999988 77666555543
No 65
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=2.4e-26 Score=179.04 Aligned_cols=163 Identities=18% Similarity=0.281 Sum_probs=121.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-hhHhhhccCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-PKLDEFLPQAA 142 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~d 142 (268)
.++|+++|++|||||||++++..+.+...+.++. +.......+..++..+.+.+|||||+++++ ..+..+++.+|
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d 77 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI----GVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVH 77 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccce----eEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCC
Confidence 4799999999999999999999988754433332 222222334456666899999999999887 46788999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|||++++ .++..+..|+..+..... ..++|+++|+||+|+...... .+..+.+.+
T Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~----------------- 137 (170)
T cd04115 78 AVVFVYDVTNM-ASFHSLPSWIEECEQHSL--PNEVPRILVGNKCDLREQIQVPTDLAQRFAD----------------- 137 (170)
T ss_pred EEEEEEECCCH-HHHHhHHHHHHHHHHhcC--CCCCCEEEEEECccchhhcCCCHHHHHHHHH-----------------
Confidence 99999999997 889999999888876532 267999999999998654321 111111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeecc---CC-chhHHHHHHhhcCC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLT---GE-ISQVEQFIREQVKP 268 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~---g~-i~~l~~~l~~~~~p 268 (268)
..+++|++|||++ ++ +++++..+.+.+++
T Consensus 138 ------------------~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~~ 170 (170)
T cd04115 138 ------------------AHSMPLFETSAKDPSENDHVEAIFMTLAHKLKS 170 (170)
T ss_pred ------------------HcCCcEEEEeccCCcCCCCHHHHHHHHHHHhhC
Confidence 2236799999999 55 99999998887653
No 66
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=3.8e-26 Score=176.49 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=122.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|||||||++++.++.+.... .++.+.......+.+++..+.+.+||+||++++...+..+++.+|+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 76 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQ----ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAA 76 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCE
Confidence 368999999999999999999998874422 2222322222334455666889999999999999889999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. +++.....|+..+..... .+.|+++++||+|+.... ..++..+.. +
T Consensus 77 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~----~-------------- 134 (163)
T cd01860 77 AIVVYDITSE-ESFEKAKSWVKELQRNAS---PNIIIALVGNKADLESKRQVSTEEAQEYA----D-------------- 134 (163)
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEECccccccCcCCHHHHHHHH----H--------------
Confidence 9999999997 789999999888877532 679999999999987432 222221111 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..++.++++||++|. +++++++|.+.+|
T Consensus 135 ------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd01860 135 ------------------ENGLLFFETSAKTGENVNELFTEIAKKLP 163 (163)
T ss_pred ------------------HcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 112579999999998 9999999998874
No 67
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.94 E-value=2.7e-26 Score=178.43 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=120.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||++++.++.+.....++ .+.......+..++....+.+|||||++++......+++.+|+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 79 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 79 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----cceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCE
Confidence 479999999999999999999988764332222 2222222234445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. +++..+..|+..+..... ++.|+++|+||+|+..... .++..... .
T Consensus 80 il~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~----~-------------- 137 (168)
T cd01866 80 ALLVYDITRR-ETFNHLTSWLEDARQHSN---SNMTIMLIGNKCDLESRREVSYEEGEAFA----K-------------- 137 (168)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccccccCCCHHHHHHHH----H--------------
Confidence 9999999987 889999999988876532 6899999999999974322 22221111 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||++|+ ++++++++.+.+
T Consensus 138 ------------------~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 138 ------------------EHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998765
No 68
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=2.3e-26 Score=185.22 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=92.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|.+|||||||++++..+.|.. ..+++. ....... . ..+.+.+|||||++.+......|++.+|++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig----~~~~~~~--~--~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ 71 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVG----GAFYLKQ--W--GPYNISIWDTAGREQFHGLGSMYCRGAAAV 71 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccc----eEEEEEE--e--eEEEEEEEeCCCcccchhhHHHHhccCCEE
Confidence 479999999999999999999998853 233322 2111111 1 236899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|+|||+++. .++..+..|+..+.... ..+.|+++|+||+|+..
T Consensus 72 IlV~Dvt~~-~Sf~~l~~~~~~l~~~~---~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 72 ILTYDVSNV-QSLEELEDRFLGLTDTA---NEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECccccc
Confidence 999999997 88999999988887643 26799999999999965
No 69
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.94 E-value=3.4e-26 Score=176.53 Aligned_cols=158 Identities=11% Similarity=0.180 Sum_probs=117.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccC--CceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK--GKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.||+++|++|+|||||++++.++.+.....++.. .......+... +..+.+++|||||++++...+..+++.+|
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 76 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIG----VDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQ 76 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEE----EEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCC
Confidence 3799999999999999999999887543333322 22222222233 55578999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. +++..+..|+..+.... .+.|+++|+||+|+........ +......+
T Consensus 77 ~~v~v~d~~~~-~s~~~l~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~v~~--~~~~~~~~--------------- 134 (162)
T cd04106 77 ACILVFSTTDR-ESFEAIESWKEKVEAEC----GDIPMVLVQTKIDLLDQAVITN--EEAEALAK--------------- 134 (162)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEEChhcccccCCCH--HHHHHHHH---------------
Confidence 99999999997 78999988888876532 6899999999999975432211 11111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++++++||++|. +++++++|.+.
T Consensus 135 -----------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 135 -----------------RLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred -----------------HcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 123479999999998 99999999864
No 70
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.94 E-value=3e-27 Score=182.05 Aligned_cols=174 Identities=48% Similarity=0.671 Sum_probs=118.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhh---cc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEF---LP 139 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~---~~ 139 (268)
+...|+++|++|+|||+|+.+|..+.... +.++++++.+. .+ .......+.++|+|||.+.+.....+ ..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~-T~tS~e~n~~~-~~-----~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~ 74 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVP-TVTSMENNIAY-NV-----NNSKGKKLRLVDIPGHPRLRSKLLDELKYLS 74 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS----B---SSEEEEC-CG-----SSTCGTCECEEEETT-HCCCHHHHHHHHHHG
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCC-eeccccCCceE-Ee-----ecCCCCEEEEEECCCcHHHHHHHHHhhhchh
Confidence 45689999999999999999999986533 45566444321 11 11222478999999999998876554 88
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc-cc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV-SE 218 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~ 218 (268)
.+.++|||+|++.....+.+..++|.+++.........+|++|++||+|+..+.+...++..++++|+.++.++++. ..
T Consensus 75 ~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~lr~tr~~~l~~ 154 (181)
T PF09439_consen 75 NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDKLRKTRSKSLES 154 (181)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHHHHHCHHHHHH-
T ss_pred hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999864356888999999998876555689999999999999999999999999999999999998863 22
Q ss_pred --ccccCcccCCCCCCCeeeccCCcee
Q 024385 219 --ADVTNDFTLGIPGQAFSFSQCHNKV 243 (268)
Q Consensus 219 --~~~~~~~~~~~~~~~f~f~~~~~~~ 243 (268)
++......++..+.+|+|++++++|
T Consensus 155 ~d~~~~~~~~lg~~g~~F~F~~L~~~V 181 (181)
T PF09439_consen 155 VDEDDDENEFLGKEGEDFTFEQLENNV 181 (181)
T ss_dssp ---------TTS-TTS---GGGSSS-E
T ss_pred cccccccccccCCCCCCcchhhccCCC
Confidence 2233456788888999999998764
No 71
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=3.5e-26 Score=175.96 Aligned_cols=156 Identities=24% Similarity=0.351 Sum_probs=112.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++..+.+.. ..++....... +.. ....+.+|||||+.++...+..+++.+|++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~------~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii 71 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVET------VTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAII 71 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEE------EEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 68999999999999999998877643 22332222111 112 2368999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|+++. .++.....++..++.... ..+.|+++|+||+|+.......++.+.+..
T Consensus 72 ~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~--------------------- 127 (158)
T cd04151 72 YVVDSTDR-DRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGALSEAEISEKLGL--------------------- 127 (158)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCCCCHHHHHHHhCc---------------------
Confidence 99999986 556666777776655322 157899999999999755433322221100
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
......+.++++|||++|+ ++++++||.+
T Consensus 128 ----------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 128 ----------SELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred ----------cccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 0001234579999999999 9999999875
No 72
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=2e-26 Score=183.23 Aligned_cols=152 Identities=14% Similarity=0.218 Sum_probs=117.0
Q ss_pred EcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEe
Q 024385 70 AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVD 149 (268)
Q Consensus 70 vG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d 149 (268)
+|.+|||||||++++..+.+...+.+++. .......+..++..+.+.+|||+|+++++..+..|++.+|++|+|||
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig----~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D 76 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLG----VEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 76 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCcee----EEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEE
Confidence 69999999999999998887554444332 22222334445666899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCC
Q 024385 150 ALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGI 229 (268)
Q Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (268)
+++. .++..+..|+..+.... .++|+++|+||+|+.......+ .+ . +..
T Consensus 77 ~t~~-~S~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~~---~~-~-~~~--------------------- 125 (200)
T smart00176 77 VTAR-VTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDVKDRKVKAK---SI-T-FHR--------------------- 125 (200)
T ss_pred CCCh-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCHH---HH-H-HHH---------------------
Confidence 9998 88999999988887653 6899999999999854221111 11 0 000
Q ss_pred CCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 230 PGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 230 ~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.|++|||++|+ |+++++||.+.+
T Consensus 126 ----------~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 126 ----------KKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred ----------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 234689999999999 999999998754
No 73
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=3.7e-26 Score=184.14 Aligned_cols=119 Identities=15% Similarity=0.105 Sum_probs=96.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++..+.|+..+.+++... +...+.++++.+.+.+|||+|++.|......+++.+|++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~-----~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~i 76 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFEN-----YTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAV 76 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-----eEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEE
Confidence 689999999999999999999998876555554322 223345577778999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
|+|||+++. ++++.+..++....... .++.|+++|+||+|+...
T Consensus 77 llvfdis~~-~Sf~~i~~~w~~~~~~~---~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 77 LICFDISRP-ETLDSVLKKWQGETQEF---CPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhh---CCCCCEEEEEECcccccc
Confidence 999999998 88999865444433332 268999999999999653
No 74
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.94 E-value=3.9e-26 Score=187.29 Aligned_cols=161 Identities=16% Similarity=0.234 Sum_probs=121.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
++|+++|.+|||||||++++.++.+...+.+++. .+ ....+.+++..+.+.||||+|++++......++..+|++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~----d~-~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~i 75 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE----DF-HRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVF 75 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh----Hh-EEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 4899999999999999999999988654443332 11 222344567778999999999999988888889999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCC------ccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNST------VVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
|+|||+++. ++++.+..|+..+..... ....+.|+++|+||+|+.... ..+++.+.+..
T Consensus 76 IlVfdv~~~-~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~------------ 142 (247)
T cd04143 76 ILVFSLDNR-ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG------------ 142 (247)
T ss_pred EEEEeCCCH-HHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh------------
Confidence 999999997 889999998888865311 012579999999999997422 22222211110
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+.++++||++|. +++++++|.+..
T Consensus 143 -----------------------~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 143 -----------------------DENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred -----------------------cCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 224579999999998 999999998754
No 75
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=5.3e-26 Score=182.95 Aligned_cols=161 Identities=14% Similarity=0.235 Sum_probs=120.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccccc-CCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.+||+++|++|||||||++++.++.+.....+++ +.......+.. ++..+.+++|||||++.+......+++.+|
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti----~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 77 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTV----GVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSV 77 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcee----ceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCc
Confidence 4799999999999999999999988754333332 22222222222 355578999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|||+++. +++..+..|+..+..... ....|+++|+||+|+...... .+..+.+.+
T Consensus 78 ~iilv~D~~~~-~Sf~~l~~~~~~i~~~~~--~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~----------------- 137 (211)
T cd04111 78 GVLLVFDITNR-ESFEHVHDWLEEARSHIQ--PHRPVFILVGHKCDLESQRQVTREEAEKLAK----------------- 137 (211)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCeEEEEEEccccccccccCHHHHHHHHH-----------------
Confidence 99999999997 889999999998876532 246789999999999753321 111111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||++|+ +++++++|.+.+
T Consensus 138 ------------------~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 138 ------------------DLGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred ------------------HhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122689999999998 999999998754
No 76
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=5.4e-26 Score=176.00 Aligned_cols=154 Identities=22% Similarity=0.341 Sum_probs=115.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEE
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 146 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~ 146 (268)
|+++|++|||||||++++.++.+...+.++.... . ..+++..+.+.+|||||+++++..+..+++.+|++|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~----~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 73 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN----S----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIF 73 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc----e----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 7999999999999999999887754444433221 1 1123334789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCccc
Q 024385 147 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 226 (268)
Q Consensus 147 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (268)
|||+++. .++.....|+..+.... .++|+++|+||+|+......+++.+.++ ++.
T Consensus 74 V~D~t~~-~s~~~~~~~l~~~~~~~----~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~------------------ 128 (164)
T cd04162 74 VVDSADS-ERLPLARQELHQLLQHP----PDLPLVVLANKQDLPAARSVQEIHKELE--LEP------------------ 128 (164)
T ss_pred EEECCCH-HHHHHHHHHHHHHHhCC----CCCcEEEEEeCcCCcCCCCHHHHHHHhC--Chh------------------
Confidence 9999997 67888888888887542 6899999999999987665554433321 011
Q ss_pred CCCCCCCeeeccCCceeEEEEeeecc------CC-chhHHHHHH
Q 024385 227 LGIPGQAFSFSQCHNKVSVAEASGLT------GE-ISQVEQFIR 263 (268)
Q Consensus 227 ~~~~~~~f~f~~~~~~~~~~~~Sa~~------g~-i~~l~~~l~ 263 (268)
+.. ..++.+++|||++ ++ ++++++.+.
T Consensus 129 ---------~~~-~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 129 ---------IAR-GRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred ---------hcC-CCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 111 2356788888888 77 888887765
No 77
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=7.3e-26 Score=179.17 Aligned_cols=159 Identities=17% Similarity=0.234 Sum_probs=120.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+...+.++.. .......+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i 76 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIG----VDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGY 76 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee----eEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEE
Confidence 4899999999999999999999987543333332 222223344556668899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
|+|||+++. +++..+..|+..+..... .+.|+++|+||+|+....... +....+.+
T Consensus 77 ilv~d~~~~-~s~~~i~~~~~~i~~~~~---~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~------------------- 133 (188)
T cd04125 77 LLVYDVTDQ-ESFENLKFWINEINRYAR---ENVIKVIVANKSDLVNNKVVDSNIAKSFCD------------------- 133 (188)
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEECCCCcccccCCHHHHHHHHH-------------------
Confidence 999999998 789999999888876432 568999999999997543211 11111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++||++|. +++++++|.+.+
T Consensus 134 ----------------~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 134 ----------------SLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred ----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999987754
No 78
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=1.2e-25 Score=177.78 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=115.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccC-CceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.||+++|++|||||||++++.++.+...+.++.... ... .+... +..+.+.+|||||++++......+++.+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~----~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFEN----YVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDV 75 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeee----eEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCE
Confidence 489999999999999999999998865444443221 111 12222 556789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-H-HHHHHHHHHHHHHhhhcccccc
Q 024385 144 IVFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-I-RKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~-~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|+|+|+++. .+++.+.. |+..+... ..+.|+++|+||+|+........ + .+...+....
T Consensus 76 ii~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~------------ 138 (187)
T cd04132 76 LLICYAVDNP-TSLDNVEDKWFPEVNHF----CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK------------ 138 (187)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH------------
Confidence 9999999997 78888864 66555443 26899999999999975431110 0 0111110010
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+..++++|||++|+ ++++++++.+.+
T Consensus 139 -------------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 139 -------------------QGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred -------------------cCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 112278999999998 999998887653
No 79
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=1.1e-25 Score=178.89 Aligned_cols=163 Identities=14% Similarity=0.209 Sum_probs=118.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|+|||||++++.++.+... .+.++.+.......+..++..+.+.+|||||++++......+++.+|++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~i 77 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVG---PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAA 77 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCc---CcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEE
Confidence 3899999999999999999999887431 1222333222333455667778899999999999988899999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC-HHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|||+++. .+++.+..|+..+.... .+.|+++|+||+|+..... ...+. ..++.++
T Consensus 78 ilv~d~~~~-~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~v~---~~~~~~~-------------- 135 (193)
T cd04118 78 IVCYDLTDS-SSFERAKFWVKELQNLE----EHCKIYLCGTKSDLIEQDRSLRQVD---FHDVQDF-------------- 135 (193)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHhcC----CCCCEEEEEEcccccccccccCccC---HHHHHHH--------------
Confidence 999999997 78888888888776532 5799999999999864321 10100 0111111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. ..+++++++||++|+ +++++++|.+.+
T Consensus 136 -------------~~-~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 136 -------------AD-EIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred -------------HH-HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 123478999999998 999999998653
No 80
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=1.3e-25 Score=178.68 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=114.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------Hhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LDE 136 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~~ 136 (268)
++|+++|.+|||||||++++.++.|...+.++... ..+...+.++|..+.+.+|||||..++... ...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~----~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~ 76 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHR----RLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFR 76 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCcccc----ccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHh
Confidence 48999999999999999999999885544333321 112222345676688999999997654221 234
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+++.+|++|+|||++++ ++++.+..|+..+.+.......++|+++|+||+|+....... .+.+.....+
T Consensus 77 ~~~~ad~iilv~D~~~~-~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~--~~~~~~~~~~-------- 145 (198)
T cd04142 77 GLRNSRAFILVYDICSP-DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP--RHVLSVLVRK-------- 145 (198)
T ss_pred hhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc--HHHHHHHHHH--------
Confidence 57899999999999997 889999888888876432112679999999999996532211 1111110000
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++|++|||++|. ++++++.+.+.
T Consensus 146 -----------------------~~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 146 -----------------------SWKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred -----------------------hcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 224689999999998 99998887754
No 81
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=8.8e-26 Score=176.40 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=115.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEE
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 146 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~ 146 (268)
|+++|++|||||||++++.++.+...+.++.. ..+......++..+.+.+|||||++++...+..+++.+|++|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 75 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF-----ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLI 75 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE-----eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEE
Confidence 58999999999999999999988554443332 1222234456766889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 147 VVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 147 v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
|||+++. ++++.+. .|+..+.... ++.|+++|+||+|+....... . .+... ....++..+.
T Consensus 76 v~d~~~~-~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~--~-~~~~~------~~~~v~~~~~---- 137 (174)
T smart00174 76 CFSVDSP-ASFENVKEKWYPEVKHFC----PNTPIILVGTKLDLREDKSTL--R-ELSKQ------KQEPVTYEQG---- 137 (174)
T ss_pred EEECCCH-HHHHHHHHHHHHHHHhhC----CCCCEEEEecChhhhhChhhh--h-hhhcc------cCCCccHHHH----
Confidence 9999997 7888886 4776665532 689999999999997532110 0 00000 0000000000
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+....+...+++|||++|. ++++++.+.+.
T Consensus 138 --------~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 138 --------EALAKRIGAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred --------HHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 001111223479999999998 99999988765
No 82
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.94 E-value=1.3e-25 Score=173.16 Aligned_cols=159 Identities=23% Similarity=0.286 Sum_probs=118.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||++++.++.+.....+ +.+.......+...+..+.+.+|||||++.+......+++.+|++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 76 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAA----TIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGV 76 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCC----cccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEE
Confidence 4899999999999999999998876432222 222111112233345557899999999999988889999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+.... ..++..+. ..
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~~~~iv~nK~D~~~~~~~~~~~~~~-~~------------------- 133 (161)
T cd01863 77 ILVYDVTRR-DTFTNLETWLNELETYST--NNDIVKMLVGNKIDKENREVTREEGLKF-AR------------------- 133 (161)
T ss_pred EEEEECCCH-HHHHhHHHHHHHHHHhCC--CCCCcEEEEEECCcccccccCHHHHHHH-HH-------------------
Confidence 999999997 778888888887776543 2689999999999997332 22222111 11
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++++.+.+
T Consensus 134 ----------------~~~~~~~~~Sa~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 134 ----------------KHNMLFIETSAKTRDGVQQAFEELVEKI 161 (161)
T ss_pred ----------------HcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence 224579999999998 999999988753
No 83
>PLN03110 Rab GTPase; Provisional
Probab=99.94 E-value=9.3e-26 Score=182.22 Aligned_cols=161 Identities=18% Similarity=0.226 Sum_probs=123.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++|||||||+++|.++.+...+.+ +.+.......+.+++..+.+.+|||||++++...+..+++.++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~----t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~ 86 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKS----TIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC----ceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence 457999999999999999999999887543333 3332233334455666689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|+|+++. .+++.+..|+..+..... .+.|+++|+||+|+....... +..+.+..
T Consensus 87 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~----------------- 145 (216)
T PLN03110 87 GALLVYDITKR-QTFDNVQRWLRELRDHAD---SNIVIMMAGNKSDLNHLRSVAEEDGQALAE----------------- 145 (216)
T ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHHhCC---CCCeEEEEEEChhcccccCCCHHHHHHHHH-----------------
Confidence 99999999997 789999999888776532 589999999999986543221 11111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++|+++||++|. +++++++|.+.+
T Consensus 146 ------------------~~~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 146 ------------------KEGLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224689999999998 999999997654
No 84
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.94 E-value=8e-26 Score=173.81 Aligned_cols=156 Identities=16% Similarity=0.218 Sum_probs=113.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
++|+++|++|||||||+.++..+.|..... |..+.+ ...+.++|..+.+.+|||+|++. ..+++.+|++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~----~~~~~~--~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ 69 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLES----PEGGRF--KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAV 69 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCC----CCccce--EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEE
Confidence 479999999999999999999888754322 222222 23355677778899999999975 3567889999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|||+++. ++++.+..|+..+...... .+.|+++|+||.|+...... ++.....+.+.
T Consensus 70 ilv~d~~~~-~sf~~~~~~~~~i~~~~~~--~~~piilvgnK~Dl~~~~~~-~v~~~~~~~~~----------------- 128 (158)
T cd04103 70 IFVFSLENE-ASFQTVYNLYHQLSSYRNI--SEIPLILVGTQDAISESNPR-VIDDARARQLC----------------- 128 (158)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcCC--CCCCEEEEeeHHHhhhcCCc-ccCHHHHHHHH-----------------
Confidence 999999998 8999999999988775422 57899999999998532111 11111111111
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.-..++.|+||||++|. |+++++++.+.
T Consensus 129 -------------~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 129 -------------ADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred -------------HHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 00234689999999999 99999998865
No 85
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=1.3e-25 Score=173.57 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=120.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.+..+.....++... ......+..++..+.+.+||+||+..+......+++.+|++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 76 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGV----DFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGA 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee----EEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEE
Confidence 48999999999999999999988764333333222 11222344456667899999999999998999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|++++ .+++.+..|+..+..... .++|+++|+||+|+.... ..+...+...
T Consensus 77 ilv~d~~~~-~s~~~~~~~l~~~~~~~~---~~~pivvv~nK~D~~~~~~~~~~~~~~~~~------------------- 133 (164)
T smart00175 77 LLVYDITNR-ESFENLKNWLKELREYAD---PNVVIMLVGNKSDLEDQRQVSREEAEAFAE------------------- 133 (164)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEEchhcccccCCCHHHHHHHHH-------------------
Confidence 999999997 778888888888776542 689999999999987532 2222222111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|. +++++++|.+.+.
T Consensus 134 -----------------~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 134 -----------------EHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred -----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123579999999998 9999999988764
No 86
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=1.7e-25 Score=172.06 Aligned_cols=156 Identities=26% Similarity=0.427 Sum_probs=118.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++.++.+.. ..++........ ...+ +.+.+|||||+..+...+..+++.+|+++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~-~~~t~~~~~~~~------~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 71 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT-TIPTIGFNVETV------EYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGII 71 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCcCcceEEE------EECC--EEEEEEECCCChhhHHHHHHHhccCCEEE
Confidence 68999999999999999999887422 233333222211 1222 68999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|++++ .++.....++..+..... ..+.|+++|+||+|+......+++.+.+....
T Consensus 72 ~v~D~~~~-~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~------------------- 129 (158)
T cd00878 72 FVVDSSDR-ERIEEAKEELHKLLNEEE--LKGVPLLIFANKQDLPGALSVSELIEKLGLEK------------------- 129 (158)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHhCcc--cCCCcEEEEeeccCCccccCHHHHHHhhChhh-------------------
Confidence 99999997 778888888888877543 26899999999999987655544443322110
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
....+++++++||++|. +++++++|.+
T Consensus 130 ------------~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 130 ------------ILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred ------------ccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 11346789999999999 9999999875
No 87
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=1.9e-25 Score=174.01 Aligned_cols=162 Identities=18% Similarity=0.207 Sum_probs=119.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++.++.+.....++ .+...........+..+.+.+||+||++.+...+..+++.+|++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 76 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT----IGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCC 76 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCc----cceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEE
Confidence 48999999999999999999998764433222 22222233344566667889999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|+|+|++++ .++.....|...++..... ...++|+++|+||+|+.... ..++....++.
T Consensus 77 i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------------- 138 (172)
T cd01862 77 VLVYDVTNP-KSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----------------- 138 (172)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH-----------------
Confidence 999999997 6778887777766554221 12479999999999997422 23332222211
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+.++++++||++|. ++++++++.+.+
T Consensus 139 ------------------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 139 ------------------NGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred ------------------cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 223589999999999 999999988753
No 88
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.94 E-value=1.7e-25 Score=176.33 Aligned_cols=166 Identities=27% Similarity=0.371 Sum_probs=118.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccccc-CCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-KGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...+|+++|++|||||||++++..+.+... .++..... ....+.. ++..+.+.+|||||++++...+..+++.+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~----~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 76 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNT----EKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCT 76 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccce----eEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccC
Confidence 357899999999999999999998876432 22222111 1111111 33447899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....++..+..... ..+.|+++|+||+|+......+++.+.+. ++.
T Consensus 77 d~ii~v~D~~~~-~~~~~~~~~~~~i~~~~~--~~~~p~iiv~NK~D~~~~~~~~~~~~~~~--~~~------------- 138 (183)
T cd04152 77 DGIVFVVDSVDV-ERMEEAKTELHKITRFSE--NQGVPVLVLANKQDLPNALSVSEVEKLLA--LHE------------- 138 (183)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhhhh--cCCCcEEEEEECcCccccCCHHHHHHHhC--ccc-------------
Confidence 999999999997 677778778777765432 25799999999999975444433322211 000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ....+++++|||++|+ +++++++|.+.+
T Consensus 139 --------------~~-~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 139 --------------LS-ASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred --------------cC-CCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 00 0224678999999999 999999988654
No 89
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=2.2e-25 Score=163.82 Aligned_cols=164 Identities=23% Similarity=0.414 Sum_probs=128.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
+.++.+|+++|..|+||||++++|.+... .++.|+.+ +.++. ....+ +.+++||.+|+..+++.|.+|+..
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~g-f~Ikt-l~~~~--~~L~iwDvGGq~~lr~~W~nYfes 83 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLG-FQIKT-LEYKG--YTLNIWDVGGQKTLRSYWKNYFES 83 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccc-eeeEE-EEecc--eEEEEEEcCCcchhHHHHHHhhhc
Confidence 34689999999999999999999998762 22333332 22221 22334 799999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++|+|+|+++. ..+++....+..++..... .+.|++|++||.|+..+.+.+++...++ ++.+
T Consensus 84 tdglIwvvDssD~-~r~~e~~~~L~~lL~eerl--aG~~~Lvlank~dl~~~l~~~~i~~~~~--L~~l----------- 147 (185)
T KOG0073|consen 84 TDGLIWVVDSSDR-MRMQECKQELTELLVEERL--AGAPLLVLANKQDLPGALSLEEISKALD--LEEL----------- 147 (185)
T ss_pred cCeEEEEEECchH-HHHHHHHHHHHHHHhhhhh--cCCceEEEEecCcCccccCHHHHHHhhC--HHHh-----------
Confidence 9999999999997 7799999999998886544 6799999999999998888777765543 1211
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ ....++.+.|||.+|+ +.+-.+||...+
T Consensus 148 ---------------~--ks~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 148 ---------------A--KSHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred ---------------c--cccCceEEEEeccccccHHHHHHHHHHHH
Confidence 0 1456789999999998 888888887653
No 90
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=1.4e-25 Score=172.89 Aligned_cols=158 Identities=25% Similarity=0.398 Sum_probs=115.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
+|+++|++|||||||++++.++.+.. ..++... .+. .+.. +..+.+.+|||||+..+...+..+++.+|++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~-----~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv 72 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGF-----NVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLV 72 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCc-----ceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 58999999999999999999987643 2222221 111 1111 22368999999999999888999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|+++. .++.....++..++..... .+.|+++|+||+|+......+++...+.. +.
T Consensus 73 ~v~D~~~~-~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~i~~~~~~--~~----------------- 130 (160)
T cd04156 73 YVVDSSDE-ARLDESQKELKHILKNEHI--KGVPVVLLANKQDLPGALTAEEITRRFKL--KK----------------- 130 (160)
T ss_pred EEEECCcH-HHHHHHHHHHHHHHhchhh--cCCCEEEEEECcccccCcCHHHHHHHcCC--cc-----------------
Confidence 99999997 6788888888888764321 57999999999999654433332222110 00
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+.. ..++++++|||++|+ +++++++|.+
T Consensus 131 ----------~~~-~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 131 ----------YCS-DRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ----------cCC-CCcEEEEecccccCCChHHHHHHHhc
Confidence 111 235689999999999 9999999875
No 91
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3e-26 Score=175.63 Aligned_cols=158 Identities=17% Similarity=0.216 Sum_probs=126.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++++|||-|+.|+..+.|....-+|+..+ .....+.++++.+..+||||+||++|+.....|++++.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGve----f~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVE----FATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEE----EEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 45789999999999999999999999966555554433 22334667888899999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|||.+.. .+++.+..||.++..+.. .++++++|+||+||...+.+. +.-+.+.+
T Consensus 89 GAllVYDITr~-~Tfenv~rWL~ELRdhad---~nivimLvGNK~DL~~lraV~te~~k~~Ae----------------- 147 (222)
T KOG0087|consen 89 GALLVYDITRR-QTFENVERWLKELRDHAD---SNIVIMLVGNKSDLNHLRAVPTEDGKAFAE----------------- 147 (222)
T ss_pred eeEEEEechhH-HHHHHHHHHHHHHHhcCC---CCeEEEEeecchhhhhccccchhhhHhHHH-----------------
Confidence 99999999998 889999999999999976 899999999999997643221 11112221
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
.+...|+++||+.+. +++.++-+.
T Consensus 148 ------------------~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 148 ------------------KEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred ------------------hcCceEEEecccccccHHHHHHHHH
Confidence 344589999999986 776665443
No 92
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=1.6e-25 Score=173.26 Aligned_cols=159 Identities=13% Similarity=0.155 Sum_probs=116.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC--CcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.||+++|++|||||||++++..+ .+...+.++..+........ .. .+..+.+.+|||||++.+...+..+++.+|
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 77 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVP--VD-TDNTVELFIFDSAGQELYSDMVSNYWESPS 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEE--eC-CCCEEEEEEEECCCHHHHHHHHHHHhCCCC
Confidence 38999999999999999999865 45443333332221111111 11 355589999999999998888999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHH-HHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIR-KQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|+|.++. .++..+..|+..+.... .+.|+++|+||+|+.......... +.+..
T Consensus 78 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 135 (164)
T cd04101 78 VFILVYDVSNK-ASFENCSRWVNKVRTAS----KHMPGVLVGNKMDLADKAEVTDAQAQAFAQ----------------- 135 (164)
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCCHHHHHHHHH-----------------
Confidence 99999999997 77888888888776642 578999999999996543221111 11110
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|. +++++++|.+.+
T Consensus 136 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 136 ------------------ANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ------------------HcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 123579999999998 999999998754
No 93
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.6e-26 Score=171.77 Aligned_cols=164 Identities=25% Similarity=0.429 Sum_probs=139.2
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
...+.+|+++|..|+||||++++|..+++.. +++|+..++....+.. +++++||.+|++.+++.|..|++.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-tvPTiGfnVE~v~ykn--------~~f~vWDvGGq~k~R~lW~~Y~~~ 84 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TVPTIGFNVETVEYKN--------ISFTVWDVGGQEKLRPLWKHYFQN 84 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCccc-CCCccccceeEEEEcc--------eEEEEEecCCCcccccchhhhccC
Confidence 4678999999999999999999999888654 3666666666555542 799999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|||+|+++. +.+.+..+.+..++.+... .+.|+++++||.|+..+.+..++.+.+.. ..+
T Consensus 85 t~~lIfVvDS~Dr-~Ri~eak~eL~~~l~~~~l--~~~~llv~aNKqD~~~als~~ei~~~L~l--~~l----------- 148 (181)
T KOG0070|consen 85 TQGLIFVVDSSDR-ERIEEAKEELHRMLAEPEL--RNAPLLVFANKQDLPGALSAAEITNKLGL--HSL----------- 148 (181)
T ss_pred CcEEEEEEeCCcH-HHHHHHHHHHHHHHcCccc--CCceEEEEechhhccccCCHHHHHhHhhh--hcc-----------
Confidence 9999999999998 7799999999999998653 79999999999999999998888777652 111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
...+..+..|+|.+|+ +.+..+||.+.++
T Consensus 149 ------------------~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 149 ------------------RSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred ------------------CCCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 1345688899999999 9999999998764
No 94
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.94 E-value=2.5e-25 Score=172.94 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=120.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+++|+++|++|||||||++++.++.+.....+ +.+.. +...+..++..+.+.+|||||++++...+..+++.+++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~----t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 75 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDP----TIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQG 75 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCC----cchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCE
Confidence 36899999999999999999998887443332 22211 22334455666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|++++ ++++....|...+..... ..+.|+++++||+|+......... ......+.
T Consensus 76 ~vlv~~~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~D~~~~~~~~~~--~~~~~~~~--------------- 135 (168)
T cd04177 76 FLLVYSVTSE-ASLNELGELREQVLRIKD--SDNVPMVLVGNKADLEDDRQVSRE--DGVSLSQQ--------------- 135 (168)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhhC--CCCCCEEEEEEChhccccCccCHH--HHHHHHHH---------------
Confidence 9999999997 788888888877765322 268999999999999654322110 01110000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+.++++++||++|. ++++++++.+.+
T Consensus 136 ----------------~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 136 ----------------WGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred ----------------cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998754
No 95
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=3.8e-26 Score=164.85 Aligned_cols=157 Identities=18% Similarity=0.319 Sum_probs=127.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.+.+|+|++|+|||+|+.++..+.|..+++.+++.. +.+. .+.+.|..+.++||||+|+++|+.....|+++.+++
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvD---fkir-Tv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVD---FKIR-TVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeee---EEEE-EeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 467899999999999999999999988777766433 2222 345568889999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHH-HHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIR-KQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|||+++. ++|.....|+.++..+. ..+|-++|+||.|....+..+... .....
T Consensus 85 ~vVYDVTn~-ESF~Nv~rWLeei~~nc----dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~------------------- 140 (198)
T KOG0079|consen 85 IVVYDVTNG-ESFNNVKRWLEEIRNNC----DSVPKVLVGNKNDDPERRVVDTEDARAFAL------------------- 140 (198)
T ss_pred EEEEECcch-hhhHhHHHHHHHHHhcC----ccccceecccCCCCccceeeehHHHHHHHH-------------------
Confidence 999999998 89999999999999875 688999999999998765432211 11111
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.-++++||+|||+.+ ++..+..|.+.
T Consensus 141 ----------------~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 141 ----------------QMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ----------------hcCchheehhhhhcccchHHHHHHHHH
Confidence 335689999999987 88887777654
No 96
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.4e-26 Score=163.97 Aligned_cols=154 Identities=24% Similarity=0.367 Sum_probs=123.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
-+|++++|+.|+|||+|+.++..++|.+....++....+.- .+.+.++.++++||||+|+++|++..+.|++++.+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSr----IinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSR----IVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecce----eeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 46899999999999999999999998765555544333322 24457788999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
.++|||+++. ++++.+..|+.++...+. +++-+++++||.||...+.+...... +
T Consensus 85 AlLVYD~Tsr-dsfnaLtnWL~DaR~lAs---~nIvviL~GnKkDL~~~R~VtflEAs--~------------------- 139 (214)
T KOG0086|consen 85 ALLVYDITSR-DSFNALTNWLTDARTLAS---PNIVVILCGNKKDLDPEREVTFLEAS--R------------------- 139 (214)
T ss_pred eEEEEeccch-hhHHHHHHHHHHHHhhCC---CcEEEEEeCChhhcChhhhhhHHHHH--h-------------------
Confidence 9999999998 899999999999987654 88999999999999876554322110 0
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHH
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVE 259 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~ 259 (268)
|.+ ++.+-|.|+||+||+ +++.+
T Consensus 140 ------------Faq-Enel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 140 ------------FAQ-ENELMFLETSALTGENVEEAF 163 (214)
T ss_pred ------------hhc-ccceeeeeecccccccHHHHH
Confidence 333 455689999999998 77653
No 97
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.4e-26 Score=163.36 Aligned_cols=160 Identities=19% Similarity=0.285 Sum_probs=125.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
-+||+++|..|+|||+|+.+++.+-|+.+...++.. ...-..+.+.|..++++||||+|+++|++..+.|++.+++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigv----dfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGV----DFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeee----eEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 468999999999999999999999987665555432 2233345667888999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+|+|||++.. .+|.-+.+|+.++-+.+. ..+--|+|+||+|+.+.+. +.+++.++..+
T Consensus 83 lilvydiscq-psfdclpewlreie~yan---~kvlkilvgnk~d~~drre---vp~qigeefs~--------------- 140 (213)
T KOG0095|consen 83 LILVYDISCQ-PSFDCLPEWLREIEQYAN---NKVLKILVGNKIDLADRRE---VPQQIGEEFSE--------------- 140 (213)
T ss_pred EEEEEecccC-cchhhhHHHHHHHHHHhh---cceEEEeeccccchhhhhh---hhHHHHHHHHH---------------
Confidence 9999999997 789999999999988764 6677789999999976532 23333332221
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
....-|+|+||++.+ ++.|+.-+.-+
T Consensus 141 ----------------~qdmyfletsakea~nve~lf~~~a~r 167 (213)
T KOG0095|consen 141 ----------------AQDMYFLETSAKEADNVEKLFLDLACR 167 (213)
T ss_pred ----------------hhhhhhhhhcccchhhHHHHHHHHHHH
Confidence 122347889999987 88887666543
No 98
>PLN03108 Rab family protein; Provisional
Probab=99.93 E-value=3.8e-25 Score=177.93 Aligned_cols=160 Identities=17% Similarity=0.174 Sum_probs=121.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..+||+++|++|||||||++++..+.+...+.++ .+.......+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~t----i~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCC----ccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 4579999999999999999999998775433322 222222233455666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+.... ..++..+...
T Consensus 81 ~~vlv~D~~~~-~s~~~l~~~~~~~~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~----------------- 139 (210)
T PLN03108 81 GALLVYDITRR-ETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK----------------- 139 (210)
T ss_pred EEEEEEECCcH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCccccCCCHHHHHHHHH-----------------
Confidence 99999999997 788988888887765432 689999999999997543 2222221111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++|+.+.+
T Consensus 140 -------------------~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 140 -------------------EHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999998887654
No 99
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=7.4e-25 Score=169.96 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=112.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++..+.+...... ..+. ... .....+..+.+.+|||||+..+...+..+++.+|+++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~-~~~~---~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i 75 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPR-VLPE---ITI--PADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVIC 75 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCC-cccc---eEe--eeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEE
Confidence 899999999999999999999987543221 1111 111 1223455578999999999988888888899999999
Q ss_pred EEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 146 FVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
+|+|++++ .++..+.. |+..+.... .+.|+++|+||+|+.+........+.+....+.
T Consensus 76 lv~d~~~~-~s~~~~~~~~~~~i~~~~----~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 134 (166)
T cd01893 76 LVYSVDRP-STLERIRTKWLPLIRRLG----VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE---------------- 134 (166)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhcccccchhHHHHHHHHHHHH----------------
Confidence 99999997 77888754 444444322 589999999999997655432112222111111
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ ....++++|||++|. ++++++.+.+.+
T Consensus 135 -----------~---~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 135 -----------F---REIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred -----------H---hcccEEEEeccccccCHHHHHHHHHHHh
Confidence 1 111269999999998 999998887653
No 100
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=6.4e-25 Score=169.14 Aligned_cols=160 Identities=17% Similarity=0.210 Sum_probs=117.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|+|||||++++.++.+.....++... ..........+..+.+.+||+||++.+...+..+++.+|++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 76 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQA----SFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGA 76 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccce----eEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEE
Confidence 48999999999999999999998774432222211 11222233345557899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|+++. ++++....|+..+..... .++|+++|+||+|+........ +.+.+..+
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~----------------- 133 (162)
T cd04123 77 ILVYDITDA-DSFQKVKKWIKELKQMRG---NNISLVIVGNKIDLERQRVVSK--SEAEEYAK----------------- 133 (162)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccCCCH--HHHHHHHH-----------------
Confidence 999999997 778888888877766432 4799999999999975432111 11111111
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++||.+.+
T Consensus 134 ---------------~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 134 ---------------SVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred ---------------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 123468999999998 999999998764
No 101
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=5.2e-25 Score=172.20 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=117.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
..||+++|++|||||||++++.++.+...+.++.... +...+.+++..+.+.+|||||++++......+++.+|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-----YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 75 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccc-----eEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCE
Confidence 3689999999999999999999988765444443221 11233455666789999999999998888888999999
Q ss_pred EEEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+++|+|+++. +++..+.. |+..+... ..+.|+++|+||+|+.......+ .+. .. ....+...
T Consensus 76 ~i~v~~~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~---~i~----~~--~~~~v~~~--- 138 (175)
T cd01870 76 ILMCFSIDSP-DSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRR---ELA----KM--KQEPVKPE--- 138 (175)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEeeChhcccChhhhh---hhh----hc--cCCCccHH---
Confidence 9999999997 67777754 55555432 15889999999999865322111 010 00 00000000
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+....+..++++|||++|. +++++++|.+.+
T Consensus 139 ---------~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 139 ---------EGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ---------HHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 00001111234579999999998 999999998764
No 102
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.93 E-value=5e-25 Score=170.15 Aligned_cols=158 Identities=16% Similarity=0.260 Sum_probs=120.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+||+++|++|||||||+++++.+.+.....++.... +......++..+.+.+|||||+.++......+++.+|++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 75 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-----YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGF 75 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-----EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEE
Confidence 489999999999999999999888754333332211 122334566667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|++++ .++.....|+..+..... ..++|+++|+||+|+.... ...+..+ +. +
T Consensus 76 i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~D~~~~~~~~~~~~~~-~~---~--------------- 133 (164)
T cd04139 76 LLVFSITDM-ESFTATAEFREQILRVKD--DDNVPLLLVGNKCDLEDKRQVSSEEAAN-LA---R--------------- 133 (164)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEccccccccccCHHHHHH-HH---H---------------
Confidence 999999987 778888899888887533 2689999999999997522 1111111 11 1
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++++.+++
T Consensus 134 -----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 134 -----------------QWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred -----------------HhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 112479999999999 999999998765
No 103
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.93 E-value=5.2e-25 Score=169.98 Aligned_cols=157 Identities=23% Similarity=0.316 Sum_probs=124.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++.++.+...+.++ .+.......+..++..+.+.+||++|++++......+++.+|++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 76 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPT----IGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAII 76 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETT----SSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccc----ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999886544433 333344444556677789999999999999998999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+|+|.++. ++++.+..|+..+..... .+.|+++++||.|+.... +.++..+...
T Consensus 77 i~fd~~~~-~S~~~~~~~~~~i~~~~~---~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-------------------- 132 (162)
T PF00071_consen 77 IVFDVTDE-ESFENLKKWLEEIQKYKP---EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-------------------- 132 (162)
T ss_dssp EEEETTBH-HHHHTHHHHHHHHHHHST---TTSEEEEEEETTTGGGGSSSCHHHHHHHHH--------------------
T ss_pred cccccccc-cccccccccccccccccc---ccccceeeeccccccccccchhhHHHHHHH--------------------
Confidence 99999997 899999999999887642 479999999999998633 3333222221
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||+++. +.+++..+.+.+
T Consensus 133 ----------------~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 133 ----------------ELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp ----------------HTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ----------------HhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 122689999999998 999887776643
No 104
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=7.4e-25 Score=170.30 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=118.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++++++|++|||||||++++..+.+.....+ +.+.......+.+.+..+.+.+||+||+..+...+..+++.+|
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 81 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA----TIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSAN 81 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----ceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 458999999999999999999998776433222 2222222223445666678999999999999998899999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+....... ..+.+.+.+
T Consensus 82 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~---~~~~~~i~v~NK~D~~~~~~i~---~~~~~~~~~-------------- 140 (169)
T cd04114 82 ALILTYDITCE-ESFRCLPEWLREIEQYA---NNKVITILVGNKIDLAERREVS---QQRAEEFSD-------------- 140 (169)
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccccC---HHHHHHHHH--------------
Confidence 99999999987 67888888877665432 2579999999999996543321 111111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+++|||++|. +++++++|.+++
T Consensus 141 -----------------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 141 -----------------AQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred -----------------HcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 112579999999998 999999998764
No 105
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.93 E-value=9.2e-25 Score=170.62 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=116.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|+|||||++++..+.+...+.++... .+...+..++..+.+.+|||||++++......+++.+|++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 75 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-----HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 75 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-----eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEE
Confidence 48999999999999999999999875444433321 1222344566667899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|+|+++. ++++.+.. |+..+... ..+.|+++|+||+|+.+............ ...++..+..
T Consensus 76 ilv~~~~~~-~s~~~~~~~~~~~l~~~----~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~v~~~~~~- 140 (174)
T cd04135 76 LICFSVVNP-ASFQNVKEEWVPELKEY----APNVPYLLVGTQIDLRDDPKTLARLNDMK---------EKPVTVEQGQ- 140 (174)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEeEchhhhcChhhHHHHhhcc---------CCCCCHHHHH-
Confidence 999999997 78888864 54444432 27899999999999865432111100000 0000000000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+....+..+|++|||++|. ++++++.+.+.+
T Consensus 141 -----------~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 141 -----------KLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred -----------HHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 01111223479999999999 999999887653
No 106
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=1.1e-24 Score=172.92 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=110.1
Q ss_pred CCeEEEEcCCCCcHHHHHH-HHHcCCccccc-ceeeccccc---eEEee------cccccCCceeeEEEEeCCCCCCchh
Q 024385 64 STTIVLAGLSGSGKTVLFY-QLRDGSTHQGT-VTSMEPNED---TFVLH------SESTKKGKIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~-~l~~~~~~~~~-~~~~~~~~~---~~~~~------~~~~~~~~~~~~~i~DtpG~~~~~~ 132 (268)
.+||+++|++|||||||+. ++.++.+.... ...+.|+.+ .+... ....++|..+.+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4699999999999999996 66555442211 122333332 11111 1124577789999999999975 2
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-------------H
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-------------I 198 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-------------~ 198 (268)
....+++.+|++|+|||+++. .+++.+. .|+..+.... .+.|+++|+||+|+......+. .
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~-~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASP-NSLRNVKTMWYPEIRHFC----PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred hhcccCCCCCEEEEEEECCCh-hHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhccccccchhhhcccccccccccC
Confidence 455689999999999999997 8899887 4777665432 5789999999999964211000 0
Q ss_pred HHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 199 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 199 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
+....++.+. ++. ..+++|+||||++|+ ++++++.+.+.
T Consensus 155 ~~V~~~e~~~---------------------------~a~-~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 155 DILPPETGRA---------------------------VAK-ELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CccCHHHHHH---------------------------HHH-HhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 0000001111 111 234589999999999 99999988764
No 107
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=1.2e-24 Score=166.78 Aligned_cols=156 Identities=28% Similarity=0.350 Sum_probs=115.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEE
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 146 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~ 146 (268)
|+++|++|||||||++++.+..+...+.++....... ...++ +.+.+|||||+..++..+..+++.+|++++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~------~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 73 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK------VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVY 73 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE------EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 7999999999999999999998765554444322211 11222 689999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCccc
Q 024385 147 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 226 (268)
Q Consensus 147 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (268)
|+|+++. .++.....++..+..... ..+.|+++|+||+|+.......++.+.+.. .
T Consensus 74 v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~--~------------------- 129 (159)
T cd04159 74 VVDAADR-TALEAAKNELHDLLEKPS--LEGIPLLVLGNKNDLPGALSVDELIEQMNL--K------------------- 129 (159)
T ss_pred EEECCCH-HHHHHHHHHHHHHHcChh--hcCCCEEEEEeCccccCCcCHHHHHHHhCc--c-------------------
Confidence 9999986 667777788888776432 257899999999998765443322211110 0
Q ss_pred CCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 227 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 227 ~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
......++++++||++|. ++++++||.+
T Consensus 130 ----------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 130 ----------SITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ----------cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 000234689999999998 9999999975
No 108
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.93 E-value=1.2e-24 Score=169.30 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=113.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||+++|+++.+.....++.... ........+..+.+.+|||||++++......+++.+|++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~ 75 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-----YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVF 75 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-----eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEE
Confidence 489999999999999999999998744344333211 122233446667899999999998888888888999999
Q ss_pred EEEEeCCCCCCCHHHHHH-HHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH---------HHHHHHHHHHHHHhhh
Q 024385 145 VFVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI---------RKQMEKEIDKLRASRS 214 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~---------~~~l~~~l~~~~~~~~ 214 (268)
++|+|+++. .++..... |+..+.... .+.|+++|+||+|+......... .+...+
T Consensus 76 i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~---------- 140 (171)
T cd00157 76 LICFSVDSP-SSFENVKTKWIPEIRHYC----PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEK---------- 140 (171)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhhC----CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHH----------
Confidence 999999997 66776655 444444332 58999999999999865533211 000000
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+....+..+++++||++|+ +++++++|.+
T Consensus 141 ---------------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 141 ---------------------LAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred ---------------------HHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 1111233489999999998 9999999875
No 109
>PLN03118 Rab family protein; Provisional
Probab=99.93 E-value=1.3e-24 Score=175.02 Aligned_cols=164 Identities=20% Similarity=0.208 Sum_probs=118.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+.. ..++.+.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVED-----LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC-----cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 356899999999999999999999887632 223333222223344556667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|||+++. +++..+..++...+.... ...+.|+++|+||+|+........ +.......
T Consensus 87 d~~vlv~D~~~~-~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~i~~--~~~~~~~~-------------- 148 (211)
T PLN03118 87 QGIILVYDVTRR-ETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRESERDVSR--EEGMALAK-------------- 148 (211)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccCH--HHHHHHHH--------------
Confidence 999999999997 778888765544433211 125689999999999975433211 11111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.|++|||++|. +++++++|.+.+
T Consensus 149 ------------------~~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 149 ------------------EHGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998764
No 110
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.93 E-value=1.3e-24 Score=169.78 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=92.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.|++++|++|+|||||++++.++.+...+.++. . ..+...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~----~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~ 75 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA----F-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVF 75 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce----e-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEE
Confidence 489999999999999999999888755433332 1 22223345566668899999999999999989999999999
Q ss_pred EEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 145 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|+|||+++. ++++.+. .|+..+.... .+.|+++|+||+|+..
T Consensus 76 i~v~d~~~~-~sf~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~ 118 (173)
T cd04130 76 LLCFSVVNP-SSFQNISEKWIPEIRKHN----PKAPIILVGTQADLRT 118 (173)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhhC----CCCCEEEEeeChhhcc
Confidence 999999997 7788875 5666665431 5799999999999964
No 111
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.93 E-value=1.5e-24 Score=166.17 Aligned_cols=156 Identities=24% Similarity=0.337 Sum_probs=117.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.+|+++|++|||||||++++.++.+.....++.... .........+....+.+||+||+..+......+++.+|++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~i 76 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVD----FKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGA 76 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeee----eEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEE
Confidence 479999999999999999999988755433333222 2222233345557899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC--CCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|+++. +++..+..|+..+..... .+.|+++++||+|+... ...+++.+...
T Consensus 77 i~v~d~~~~-~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------------- 133 (159)
T cd00154 77 ILVYDITNR-ESFENLDKWLKELKEYAP---ENIPIILVGNKIDLEDQRQVSTEEAQQFAK------------------- 133 (159)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCcEEEEEEcccccccccccHHHHHHHHH-------------------
Confidence 999999996 778888898888877532 57999999999999622 22222222111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
..+++++++||++|+ +++++++|.+
T Consensus 134 -----------------~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 134 -----------------ENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred -----------------HcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 124589999999998 9999999863
No 112
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.8e-25 Score=156.40 Aligned_cols=165 Identities=23% Similarity=0.417 Sum_probs=137.9
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..++++++++|..++||||++++|..+.. ...++++..++.+.++.. +.+++||.+|++..+..|.+|+.+
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVtykN--------~kfNvwdvGGqd~iRplWrhYy~g 84 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTYKN--------VKFNVWDVGGQDKIRPLWRHYYTG 84 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEeee--------eEEeeeeccCchhhhHHHHhhccC
Confidence 35799999999999999999999998763 234555555544444433 789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
..++|||+|+.+. +.+++.++.+..++.+... .+.|++|.+||.|+..+..+.++.+.++- +.+
T Consensus 85 tqglIFV~Dsa~~-dr~eeAr~ELh~ii~~~em--~~~~~LvlANkQDlp~A~~pqei~d~leL--e~~----------- 148 (180)
T KOG0071|consen 85 TQGLIFVVDSADR-DRIEEARNELHRIINDREM--RDAIILILANKQDLPDAMKPQEIQDKLEL--ERI----------- 148 (180)
T ss_pred CceEEEEEeccch-hhHHHHHHHHHHHhCCHhh--hcceEEEEecCcccccccCHHHHHHHhcc--ccc-----------
Confidence 9999999999998 7899999999999987654 78999999999999999999998887762 111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
...++-+.+|||.+|+ +.+-+.||.+.+++
T Consensus 149 ------------------r~~~W~vqp~~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 149 ------------------RDRNWYVQPSCALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ------------------cCCccEeeccccccchhHHHHHHHHHhhccC
Confidence 1456778999999999 99999999987764
No 113
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=8.7e-25 Score=174.41 Aligned_cols=162 Identities=16% Similarity=0.198 Sum_probs=118.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||++++..+.+...+.++.. ... .....+.+..+.+++|||||+.++...+..+++.+|++|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~----~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vi 75 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE----EMH-RKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFA 75 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh----hhe-eEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEE
Confidence 689999999999999999999887543333221 111 122344555578999999999999888889999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|+++. .+++.+..|+..+..... ..++|+++|+||+|+......... +...+...
T Consensus 76 lv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~~v~~-~~~~~~~~------------------ 133 (198)
T cd04147 76 LVYAVDDP-ESFEEVERLREEILEVKE--DKFVPIVVVGNKADSLEEERQVPA-KDALSTVE------------------ 133 (198)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEEccccccccccccH-HHHHHHHH------------------
Confidence 99999997 788989888888776532 257999999999999653211111 11111000
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
...+..++++||++|. ++++++||.+.+.
T Consensus 134 -------------~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 134 -------------LDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred -------------hhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 0123468999999998 9999999998754
No 114
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=5.8e-25 Score=171.03 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=115.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc-cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
++.+||+++|.+|||||||++++.++.+. ..+.++.... + ....+..+|..+.+.+||++|++.+......+++.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~---~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~ 77 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPR---Y-AVNTVEVYGQEKYLILREVGEDEVAILLNDAELAA 77 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcc---e-EEEEEEECCeEEEEEEEecCCcccccccchhhhhc
Confidence 35689999999999999999999999885 4444433222 1 11223445666789999999999998888999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+|++++|+|++++ .+++.+..|+..+... .++|+++|+||+|+....... ...+.+.+.
T Consensus 78 ~d~~llv~d~~~~-~s~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~-------------- 137 (169)
T cd01892 78 CDVACLVYDSSDP-KSFSYCAEVYKKYFML-----GEIPCLFVAAKADLDEQQQRYEVQPDEFCRK-------------- 137 (169)
T ss_pred CCEEEEEEeCCCH-HHHHHHHHHHHHhccC-----CCCeEEEEEEcccccccccccccCHHHHHHH--------------
Confidence 9999999999997 7788777777654321 479999999999996432110 001111110
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+...++++||++|+ ++++++.|.+.+
T Consensus 138 --------------------~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 138 --------------------LGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred --------------------cCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 111135899999998 999999888753
No 115
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.93 E-value=7.3e-25 Score=158.04 Aligned_cols=164 Identities=25% Similarity=0.304 Sum_probs=132.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
..+..+.++|..++|||||+|.+..+.+.+.-+++.+.+...+ ....+.+.+||.||+.+++..|+.|++++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~--------tkgnvtiklwD~gGq~rfrsmWerycR~v 89 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV--------TKGNVTIKLWDLGGQPRFRSMWERYCRGV 89 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe--------ccCceEEEEEecCCCccHHHHHHHHhhcC
Confidence 4677899999999999999999998887655455444332211 12227899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++||+|++++ +.++...+.+.+++..... .++|+++++||.|+..+.....+.+.+.-
T Consensus 90 ~aivY~VDaad~-~k~~~sr~EL~~LL~k~~l--~gip~LVLGnK~d~~~AL~~~~li~rmgL----------------- 149 (186)
T KOG0075|consen 90 SAIVYVVDAADP-DKLEASRSELHDLLDKPSL--TGIPLLVLGNKIDLPGALSKIALIERMGL----------------- 149 (186)
T ss_pred cEEEEEeecCCc-ccchhhHHHHHHHhcchhh--cCCcEEEecccccCcccccHHHHHHHhCc-----------------
Confidence 999999999997 8899999999999987664 79999999999999988777665544431
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
-+-.+..+.++.+|+++.. |+.+.+||.++-+
T Consensus 150 --------------~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 150 --------------SSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred --------------cccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 0111567899999999987 9999999998754
No 116
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.93 E-value=8.4e-25 Score=169.44 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=113.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-chhhHhhhccCCCEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-LRPKLDEFLPQAAGI 144 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-~~~~~~~~~~~~d~i 144 (268)
+|+++|++|||||||++++..+.+...+.++.. .. +......++..+.+.+|||||+.. .......+++.+|++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~----~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~ 75 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE----SL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGF 75 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH----Hh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEE
Confidence 589999999999999999998776443333221 11 122234456667899999999985 345677889999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
|+|+|+++. ++++.+..|+..+..... ...+.|+++|+||+|+........ +...+..+
T Consensus 76 i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~----------------- 134 (165)
T cd04146 76 VLVYSITDR-SSFDEISQLKQLIREIKK-RDREIPVILVGNKADLLHYRQVST--EEGEKLAS----------------- 134 (165)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHHhCccCH--HHHHHHHH-----------------
Confidence 999999998 789888888776665321 125899999999999864322111 01111000
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccC-C-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTG-E-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g-~-i~~l~~~l~~~~ 266 (268)
..+.+|++|||++| + ++++++++.+.+
T Consensus 135 ---------------~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 135 ---------------ELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred ---------------HcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 11247999999998 4 999999998754
No 117
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.92 E-value=1.7e-24 Score=175.28 Aligned_cols=158 Identities=17% Similarity=0.176 Sum_probs=112.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcc-cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhcc-CCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLP-QAA 142 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~-~~d 142 (268)
+||+++|++|||||||++++..+.+. ..+.+ +.+.......+.+++..+.+.+|||||++. .....+++ .+|
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~----t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad 74 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDA----SGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGD 74 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCC----CccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCC
Confidence 48999999999999999999888764 22222 221111222234455667899999999982 23345566 899
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|||+++. .++..+..|+..+..... ..+.|+++|+||+|+........ ..+.+..
T Consensus 75 ~iilV~d~td~-~S~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~----------------- 134 (221)
T cd04148 75 AFVVVYSVTDR-SSFERASELRIQLRRNRQ--LEDRPIILVGNKSDLARSREVSVQEGRACAV----------------- 134 (221)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhccccceecHHHHHHHHH-----------------
Confidence 99999999998 789988888887766432 25899999999999965432111 0111110
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|+++||++|. +++++++|.+.+
T Consensus 135 ------------------~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 135 ------------------VFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred ------------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998764
No 118
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=5.7e-24 Score=166.90 Aligned_cols=163 Identities=19% Similarity=0.280 Sum_probs=106.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC-------cccccceeecc--ccceEEe--eccccc---CCceeeEEEEeCCCCCCc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGS-------THQGTVTSMEP--NEDTFVL--HSESTK---KGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~-------~~~~~~~~~~~--~~~~~~~--~~~~~~---~~~~~~~~i~DtpG~~~~ 130 (268)
++|+++|++|||||||+++|++.. +......+... ..+.... .....+ ++..+.+.+|||||++++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 479999999999999999998742 11111111100 0000000 001111 345578999999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
...+..+++.+|++|+|+|++++ .+......+. .+.. .++|+++|+||+|+.... .....+.+.+.+.
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~-~~~~~~~~~~-~~~~------~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~--- 148 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQG-VEAQTLANFY-LALE------NNLEIIPVINKIDLPSAD-PERVKQQIEDVLG--- 148 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCC-ccHhhHHHHH-HHHH------cCCCEEEEEECCCCCcCC-HHHHHHHHHHHhC---
Confidence 99999999999999999999986 3444443332 2222 578999999999986432 2222222221100
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....++++||++|+ +++++++|.+.+|+
T Consensus 149 -----------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 149 -----------------------------LDPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred -----------------------------CCcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 011258999999999 99999999998875
No 119
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=7.4e-24 Score=165.33 Aligned_cols=159 Identities=21% Similarity=0.386 Sum_probs=116.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.+..+.. ..++.+.. .. .+...+ ..+.+||+||+..+...+..+++.+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-----~~~t~g~~-~~-~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-----ITPTQGFN-IK-TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENT 82 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-----cCCCCCcc-eE-EEEECC--EEEEEEECCCCHHHHHHHHHHhcCC
Confidence 567899999999999999999999876522 22222211 11 122234 5789999999998888889999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....++..+..... ..++|+++++||+|+......+++.+.+.
T Consensus 83 ~~ii~v~D~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~i~~~l~------------------ 141 (173)
T cd04155 83 DCLIYVIDSADK-KRLEEAGAELVELLEEEK--LAGVPVLVFANKQDLATAAPAEEIAEALN------------------ 141 (173)
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECCCCccCCCHHHHHHHcC------------------
Confidence 999999999986 667777778777765432 25799999999999976544433322211
Q ss_pred cCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
...+ ....++++|||++|+ ++++++||.+
T Consensus 142 --------------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 142 --------------LHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred --------------CcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 0011 234578899999999 9999999975
No 120
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.92 E-value=5e-24 Score=163.82 Aligned_cols=159 Identities=17% Similarity=0.266 Sum_probs=117.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+++|++|||||||+++++++.+.....++.. ..........+..+.+.+||+||+..+......+++.+|+++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 75 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-----DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFI 75 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-----HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEE
Confidence 689999999999999999998876443333222 122223334455578999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcc
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 225 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (268)
+|+|+++. +++.....++..+...... ...|+++|+||+|+....... .+........
T Consensus 76 ~v~d~~~~-~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~----------------- 133 (160)
T cd00876 76 LVYSITDR-ESFEEIKGYREQILRVKDD--EDIPIVLVGNKCDLENERQVS--KEEGKALAKE----------------- 133 (160)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcCC--CCCcEEEEEECCcccccceec--HHHHHHHHHH-----------------
Confidence 99999997 7788888888888765321 589999999999997632211 1111111111
Q ss_pred cCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 226 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 226 ~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++||++|+ +++++++|.+++
T Consensus 134 ---------------~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 134 ---------------WGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred ---------------cCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 12479999999998 999999998763
No 121
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.8e-24 Score=155.08 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=121.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...|++++|.+.+|||||+.+..++.|......+.+.. +..+. +....+.+.+++|||+|+++|+...-.|+++++
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid---FKvKT-vyr~~kRiklQiwDTagqEryrtiTTayyRgam 95 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID---FKVKT-VYRSDKRIKLQIWDTAGQERYRTITTAYYRGAM 95 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeee---EEEeE-eeecccEEEEEEEecccchhhhHHHHHHhhccc
Confidence 45699999999999999999999999866555544322 33332 333445589999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH-HHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|+|+++. +++..+..|...+..... .+.|+|+|+||||+..++... +--..+..
T Consensus 96 gfiLmyDitNe-eSf~svqdw~tqIktysw---~naqvilvgnKCDmd~eRvis~e~g~~l~~----------------- 154 (193)
T KOG0093|consen 96 GFILMYDITNE-ESFNSVQDWITQIKTYSW---DNAQVILVGNKCDMDSERVISHERGRQLAD----------------- 154 (193)
T ss_pred eEEEEEecCCH-HHHHHHHHHHHHheeeec---cCceEEEEecccCCccceeeeHHHHHHHHH-----------------
Confidence 99999999997 899999999998877643 899999999999998766432 11222222
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
...+.|||+|||.+- ++++++.+.
T Consensus 155 ------------------~LGfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 155 ------------------QLGFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred ------------------HhChHHhhhcccccccHHHHHHHHH
Confidence 123479999999985 666655443
No 122
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.92 E-value=7.3e-24 Score=166.49 Aligned_cols=160 Identities=17% Similarity=0.216 Sum_probs=117.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.||+++|++|||||||++++..+.+.....++.... +.......+..+.+.+|||||+.++...+..++..++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 76 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENT-----FSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGY 76 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhh-----EEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEE
Confidence 589999999999999999999887644333322211 112233345557889999999999998999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|+++. .+++.+..++..+.+... ..+.|+++|+||+|+........ +......+
T Consensus 77 i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~--~~~~~~~~----------------- 134 (180)
T cd04137 77 ILVYSVTSR-KSFEVVKVIYDKILDMLG--KESVPIVLVGNKSDLHTQRQVST--EEGKELAE----------------- 134 (180)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEchhhhhcCccCH--HHHHHHHH-----------------
Confidence 999999997 788899988888877532 25789999999999864321111 01111011
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.+++++||++|+ ++++++|+.+.+
T Consensus 135 ---------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 135 ---------------SWGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred ---------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112478999999998 999999998653
No 123
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.91 E-value=2.5e-23 Score=164.47 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=113.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.|++++|++|+|||||++++..+.+.....++ .... +......++....+.+|||+|++.+......+++.+|++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t----~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ 76 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPT----VFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVI 76 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCc----ccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEE
Confidence 58999999999999999999987775433222 2111 122234456557889999999998877777788999999
Q ss_pred EEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH---HHHH-HHHHHHHHHhhhccccc
Q 024385 145 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI---RKQM-EKEIDKLRASRSAVSEA 219 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~---~~~l-~~~l~~~~~~~~~~~~~ 219 (268)
++|+|.++. +++..+. .|+..+.... .+.|+++|+||+|+.......+. .... ......
T Consensus 77 llv~~i~~~-~s~~~~~~~~~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~----------- 140 (187)
T cd04129 77 LIGFAVDTP-DSLENVRTKWIEEVRRYC----PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKR----------- 140 (187)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHH-----------
Confidence 999999987 7888886 4666665432 57999999999998543211100 0000 000000
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
++...+..+|++|||++|. ++++++++.+.+
T Consensus 141 ----------------~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 141 ----------------VAKEIGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred ----------------HHHHhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 0111222479999999999 999999998653
No 124
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=4.4e-23 Score=166.71 Aligned_cols=160 Identities=13% Similarity=0.172 Sum_probs=120.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....|++++|++|||||||++++..+.+...+.++.... ........++..+.+.+|||+|++++...+..++..+
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVE----VHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceE----EEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 467899999999999999999988887754444444322 2222233355568999999999999988889999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++++|+|+++. .++..+..|+..+.... .+.|+++++||+|+.......+..+ +. +
T Consensus 83 ~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~~i~lv~nK~Dl~~~~~~~~~~~-~~---~-------------- 139 (215)
T PTZ00132 83 QCAIIMFDVTSR-ITYKNVPNWHRDIVRVC----ENIPIVLVGNKVDVKDRQVKARQIT-FH---R-------------- 139 (215)
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECccCccccCCHHHHH-HH---H--------------
Confidence 999999999997 78999988988887542 5789999999999864322111111 10 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||++|. +++.+.||.+.+
T Consensus 140 ------------------~~~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 140 ------------------KKNLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 223578999999998 999999988754
No 125
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=4.4e-23 Score=172.08 Aligned_cols=155 Identities=22% Similarity=0.298 Sum_probs=103.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh--------hHhhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP--------KLDEF 137 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~--------~~~~~ 137 (268)
+|+++|.+|||||||+|+|++.++ ...+..+++++.........++ ..+.+|||||+.+... ....+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~---~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI---SITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE---eecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHH
Confidence 689999999999999999999875 2233334444433332222233 4789999999765322 13456
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
++.+|++++|+|+++. .+.. .++...+.. .+.|+++|+||+|+... +...+.+....+
T Consensus 77 l~~aDvvl~VvD~~~~-~~~~---~~i~~~l~~-----~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~---------- 134 (270)
T TIGR00436 77 IGGVDLILFVVDSDQW-NGDG---EFVLTKLQN-----LKRPVVLTRNKLDNKFK---DKLLPLIDKYAI---------- 134 (270)
T ss_pred HhhCCEEEEEEECCCC-CchH---HHHHHHHHh-----cCCCEEEEEECeeCCCH---HHHHHHHHHHHh----------
Confidence 7899999999999986 4332 333333332 57899999999999632 222222111100
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....+++++||++|+ +++|.++|.+.+++
T Consensus 135 ---------------------~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 135 ---------------------LEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred ---------------------hcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 0111268999999999 99999999998875
No 126
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=7.6e-23 Score=158.68 Aligned_cols=164 Identities=20% Similarity=0.265 Sum_probs=107.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccC-CceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
+.|+++|++|+|||||+++|..+.+......+.......... ... +....+.+|||||+..+...+..+++.+|+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~ 76 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEV----PAEVLKIPGITFIDTPGHEAFTNMRARGASLTDI 76 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEE----ecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCE
Confidence 369999999999999999999887644322111111111111 111 123689999999999988888889999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|+++. . .......+..+.. .++|+++|+||+|+.... .+.....+. .+....
T Consensus 77 il~v~d~~~~-~-~~~~~~~~~~~~~------~~~p~ivv~NK~Dl~~~~-~~~~~~~~~----~~~~~~---------- 133 (168)
T cd01887 77 AILVVAADDG-V-MPQTIEAIKLAKA------ANVPFIVALNKIDKPNAN-PERVKNELS----ELGLQG---------- 133 (168)
T ss_pred EEEEEECCCC-c-cHHHHHHHHHHHH------cCCCEEEEEEceeccccc-HHHHHHHHH----Hhhccc----------
Confidence 9999999985 2 2222222332222 578999999999986432 222222221 110000
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.......++++++||++|+ ++++++||.++..
T Consensus 134 ------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 134 ------------EDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ------------cccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 0011234689999999999 9999999988753
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.90 E-value=9.4e-23 Score=158.26 Aligned_cols=156 Identities=21% Similarity=0.234 Sum_probs=99.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh---------hHh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP---------KLD 135 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---------~~~ 135 (268)
++|+++|++|+|||||++++.++.+..... +..+...........+ +.+++|||||+.+... ...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~----~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 74 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPY----PFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAIT 74 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCC----CCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHH
Confidence 479999999999999999999987632111 1111111111112223 6899999999853110 011
Q ss_pred hhccCCCEEEEEEeCCCCCC-CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 136 EFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.....+|++++|+|+++... ++.....|+..+.... .+.|+++|+||+|+.......+ ..+ +.
T Consensus 75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~----~~~-~~------- 138 (168)
T cd01897 75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF----KNKPVIVVLNKIDLLTFEDLSE----IEE-EE------- 138 (168)
T ss_pred HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc----CcCCeEEEEEccccCchhhHHH----HHH-hh-------
Confidence 11123689999999998622 3455556666554321 4799999999999975433222 111 00
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ...+++++|||++|+ ++++++||.+.+
T Consensus 139 -----------------------~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 139 -----------------------E-LEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred -----------------------h-hccCceEEEEecccCCHHHHHHHHHHHh
Confidence 0 234579999999999 999999998865
No 128
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=5e-23 Score=176.42 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=104.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-hh-------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-PK------- 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~------- 133 (268)
.+..+|+++|.+|||||||+|+|+++.+. ..+..+++++......+..++ .++.+|||||+.+.. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~---ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS---IVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee---eccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHH
Confidence 35569999999999999999999988762 222233333222223334444 578999999985422 11
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
...+++.+|++++|+|+.+. +.....++...+.. .+.|.++|+||+|+... ...+ +.+.++..
T Consensus 125 ~~~~l~~aDvil~VvD~~~s---~~~~~~~il~~l~~-----~~~p~IlViNKiDl~~~-~~~~----~~~~l~~~---- 187 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKS---FDDITHNILDKLRS-----LNIVPIFLLNKIDIESK-YLND----IKAFLTEN---- 187 (339)
T ss_pred HHHHhhhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEEhhcCccc-cHHH----HHHHHHhc----
Confidence 11347899999999998774 44444444444332 45678899999999643 2222 22211110
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....++++||++|+ ++++++||.+++++
T Consensus 188 --------------------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 188 --------------------------HPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred --------------------------CCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 112479999999998 99999999999875
No 129
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.90 E-value=7.7e-23 Score=157.88 Aligned_cols=158 Identities=20% Similarity=0.170 Sum_probs=98.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC---cccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGS---THQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.|+++|++|||||||+++|++.. +......+....... ....+.+ ...+.+|||||++++......+++.+|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~----~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad 76 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGF----AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGID 76 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeee----EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCC
Confidence 68999999999999999998643 211111111111111 1122221 258999999999988877778899999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. . .......+..+ ... ...|+++|+||+|+..........+.+.+.+...
T Consensus 77 ~ii~V~d~~~~-~-~~~~~~~~~~~-~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~------------- 136 (164)
T cd04171 77 LVLLVVAADEG-I-MPQTREHLEIL-ELL----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT------------- 136 (164)
T ss_pred EEEEEEECCCC-c-cHhHHHHHHHH-HHh----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc-------------
Confidence 99999999874 1 22222332222 211 2349999999999975322222222222222110
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
. ...++++++||++|+ ++++++++.+
T Consensus 137 ---------------~-~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 137 ---------------F-LADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred ---------------C-cCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 0 124579999999998 9999998865
No 130
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=2.6e-23 Score=152.74 Aligned_cols=161 Identities=15% Similarity=0.247 Sum_probs=122.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccc-ccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES-TKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
..++++++|++-+|||||+..++.++|..-. +|+.+...+..-+ ...|..+++++|||+|+++|++....|++++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaels----dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrns 82 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELS----DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNS 82 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccC----CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcc
Confidence 3578999999999999999999999986544 3344333332222 2246668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
-++++|+|.++. ++|+.+..|+.+...+.. .+..+-+.+|++|+||...+.+ ++. +.+.+
T Consensus 83 vgvllvyditnr-~sfehv~~w~~ea~m~~q-~P~k~VFlLVGhKsDL~SqRqVt~EEa-EklAa--------------- 144 (213)
T KOG0091|consen 83 VGVLLVYDITNR-ESFEHVENWVKEAAMATQ-GPDKVVFLLVGHKSDLQSQRQVTAEEA-EKLAA--------------- 144 (213)
T ss_pred cceEEEEeccch-hhHHHHHHHHHHHHHhcC-CCCeeEEEEeccccchhhhccccHHHH-HHHHH---------------
Confidence 999999999998 899999999999877644 1244456799999999865433 221 12221
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.....|+|+||++|. +++-++.|.+.
T Consensus 145 --------------------~hgM~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 145 --------------------SHGMAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred --------------------hcCceEEEecccCCCcHHHHHHHHHHH
Confidence 445789999999997 88877776653
No 131
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=8.7e-23 Score=162.34 Aligned_cols=170 Identities=21% Similarity=0.246 Sum_probs=107.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc--CCcccccc-----ee---eccccceEEeecccccCCceeeEEEEeCCCCCCchhh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD--GSTHQGTV-----TS---MEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~--~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~ 133 (268)
.++|+++|.+|+|||||+++|+. +.+..... .+ ..++.+.........+....+.+.+|||||+++|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 35899999999999999999987 44432210 00 0011111111111122233478999999999999999
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
+..+++.+|++++|+|+++. .......++..... .++|+++|+||+|+.... .....+.+...++.+.
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~--~~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~--- 149 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEG--PMPQTRFVLKKALE------LGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELG--- 149 (194)
T ss_pred HHHHHHhcCEEEEEEECCCC--ccHHHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhC---
Confidence 99999999999999999985 23333344443332 578999999999997532 2222333332222110
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-----------chhHHHHHHhhcC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVK 267 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~ 267 (268)
......+++++++||++|. +++|.+.|.+++|
T Consensus 150 ----------------------~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 150 ----------------------ATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred ----------------------CccccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 0000124589999999984 4566777777665
No 132
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=6.7e-23 Score=166.34 Aligned_cols=159 Identities=25% Similarity=0.348 Sum_probs=120.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh-------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD------- 135 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~------- 135 (268)
+.-.|+++|.||+|||||+|++.+.+. .+.|..+++++..+....+.++ .++.++||||....+....
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki---sIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI---SIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce---EeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 445699999999999999999999988 7788888888888877666554 6899999999766554433
Q ss_pred -hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHHHHHHHHHHHhh
Q 024385 136 -EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 -~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~ 213 (268)
..+..+|+++||+|+.+. +....+++.+.+.. .+.|+++++||+|....... ....+.+..
T Consensus 80 ~~sl~dvDlilfvvd~~~~---~~~~d~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~--------- 142 (298)
T COG1159 80 RSALKDVDLILFVVDADEG---WGPGDEFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKK--------- 142 (298)
T ss_pred HHHhccCcEEEEEEecccc---CCccHHHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHh---------
Confidence 456789999999999996 34455555555542 46899999999999865442 111111111
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
......++++||++|. ++.|.+.+.+++|+
T Consensus 143 -------------------------~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 143 -------------------------LLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred -------------------------hCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 0222379999999999 99999999999874
No 133
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=7.8e-25 Score=155.46 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=124.4
Q ss_pred EEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEE
Q 024385 68 VLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 147 (268)
Q Consensus 68 ~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v 147 (268)
+++|++++|||+|+-|+..+.|-.+.. -.+.+....+..+..++..+++++|||+|+++|++....|++.+|+++++
T Consensus 1 mllgds~~gktcllir~kdgafl~~~f---istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allll 77 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNF---ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLL 77 (192)
T ss_pred CccccCccCceEEEEEeccCceecCce---eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeee
Confidence 368999999999999998888744332 23455566677788899999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHHHHHHHHHHHhhhccccccccCccc
Q 024385 148 VDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADVTNDFT 226 (268)
Q Consensus 148 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (268)
+|+.+. .+|+.+..|+.++.+... ..+.+.+++||+|+..++.+ .+--+.+.+
T Consensus 78 ydiank-asfdn~~~wlsei~ey~k---~~v~l~llgnk~d~a~er~v~~ddg~kla~---------------------- 131 (192)
T KOG0083|consen 78 YDIANK-ASFDNCQAWLSEIHEYAK---EAVALMLLGNKCDLAHERAVKRDDGEKLAE---------------------- 131 (192)
T ss_pred eecccc-hhHHHHHHHHHHHHHHHH---hhHhHhhhccccccchhhccccchHHHHHH----------------------
Confidence 999998 899999999999988754 78889999999999654322 111222222
Q ss_pred CCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 227 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 227 ~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++|.|+|||||- ++-.+-.|.+.+
T Consensus 132 -------------~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 132 -------------AYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred -------------HHCCCceeccccccccHhHHHHHHHHHH
Confidence 234689999999996 776666666543
No 134
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.2e-23 Score=147.29 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=121.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++.+++|+-|+|||+|+.+++..+|-.....++..+.++.. +.+.|+.++++||||+|+++|+...+.|++++
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtri----ievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI----IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeE----EEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34578999999999999999999999885544444444333322 34468889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
.+.++|+|.+.. ++...+..|+.+...... ++..+++++||.|+...+++ ++.++..+
T Consensus 85 agalmvyditrr-stynhlsswl~dar~ltn---pnt~i~lignkadle~qrdv~yeeak~fae---------------- 144 (215)
T KOG0097|consen 85 AGALMVYDITRR-STYNHLSSWLTDARNLTN---PNTVIFLIGNKADLESQRDVTYEEAKEFAE---------------- 144 (215)
T ss_pred cceeEEEEehhh-hhhhhHHHHHhhhhccCC---CceEEEEecchhhhhhcccCcHHHHHHHHh----------------
Confidence 999999999998 789999999998877544 78889999999999875543 33322222
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhH
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQV 258 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l 258 (268)
++...|+++|||+|+ +++.
T Consensus 145 --------------------engl~fle~saktg~nveda 164 (215)
T KOG0097|consen 145 --------------------ENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred --------------------hcCeEEEEecccccCcHHHH
Confidence 456789999999998 6654
No 135
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=1.1e-23 Score=153.79 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=126.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.-.+|++++|..-+|||||+-|+..++|...-.++.... ..+..+.+.+....+.||||+|+++|..+-+-|++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQAS----F~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQAS----FQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHH----HhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 346799999999999999999999999966555544322 2233455566778899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH--HHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE--FIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+++++|||.++. ++|+.+..|..++.... ...+-++||+||+||...+.+. +.....+
T Consensus 87 nGalLVyDITDr-dSFqKVKnWV~Elr~ml---Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAe---------------- 146 (218)
T KOG0088|consen 87 NGALLVYDITDR-DSFQKVKNWVLELRTML---GNEIELLIVGNKIDLEEERQVTRQEAEAYAE---------------- 146 (218)
T ss_pred CceEEEEeccch-HHHHHHHHHHHHHHHHh---CCeeEEEEecCcccHHHhhhhhHHHHHHHHH----------------
Confidence 999999999998 89999999999998764 3788999999999997654332 2222211
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.....++++||+... |.++++.|.+.
T Consensus 147 --------------------svGA~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 147 --------------------SVGALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred --------------------hhchhheecccccccCHHHHHHHHHHH
Confidence 123468999999988 99998877653
No 136
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=2.3e-22 Score=158.79 Aligned_cols=175 Identities=21% Similarity=0.227 Sum_probs=112.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceee------------ccccceEEeecccccCCceeeEEEEeCCCCCCchhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM------------EPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK 133 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~ 133 (268)
+|+++|.+|+|||||+|+|.+........... ..+.+...........+ ..+.+|||||+.++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence 48999999999999999998876543221111 00010000001111122 57899999999998888
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
+..+++.+|++++|+|+.++ .. .....++..... .+.|+++|+||+|+..........+.+.+.++......
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~-~~-~~~~~~~~~~~~------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEG-VQ-PQTREHLRIARE------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS 150 (189)
T ss_pred HHHHHHhcCEEEEEEECCCC-Cc-HHHHHHHHHHHH------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc
Confidence 99999999999999999986 22 223333333322 58899999999999864444444444443333211000
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.. ... +. .....+++++||++|. +++++++|.+++||
T Consensus 151 ~~---------------~~~--~~-~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 151 TK---------------EEG--TR-NGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred hh---------------hhh--cc-cCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 00 000 00 0235689999999999 99999999999886
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.89 E-value=4.3e-22 Score=154.82 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=103.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCCc----hhhHh---h
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL----RPKLD---E 136 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~----~~~~~---~ 136 (268)
+|+++|++|||||||+|+|.+...... ..++..+..+... ..+. ..+.+|||||+.+. ..... .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~------~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~ 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVR------VDDG-RSFVVADIPGLIEGASEGKGLGHRFLR 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEE------cCCC-CeEEEEecCcccCcccccCCchHHHHH
Confidence 589999999999999999997653111 1112222222221 2221 37899999997421 12222 3
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
.++.+|++++|+|+++..++++....|...+..... ...++|+++|+||+|+.......+..+.+ ...
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~-------- 142 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNP-ELLEKPRIVVLNKIDLLDEEELFELLKEL---LKE-------- 142 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCc-cccccccEEEEEchhcCCchhhHHHHHHH---Hhh--------
Confidence 345699999999999852357777777766655321 11478999999999997644332221111 110
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|. ++++++||.+.+
T Consensus 143 -----------------------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 143 -----------------------LWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred -----------------------CCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 123478999999998 999999998753
No 138
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=3.6e-22 Score=158.53 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC----Cccccc-----ceeeccccceEEeecc------cccCCceeeEEEEeCCCCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG----STHQGT-----VTSMEPNEDTFVLHSE------STKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~----~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~DtpG~~~ 129 (268)
.+|+++|++|+|||||+++|+.. .+.... ..+.........+... ....+..+.+++|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 37999999999999999999873 111101 0122222111211100 00123347899999999976
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
+........+.+|++++|+|++++ ........+ . +... .+.|+++|+||+|+......+...+.+.+.+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~-~~~~~~~~~-~-~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKG-IQTQTAECL-V-IGEI-----LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCC-ccHHHHHHH-H-HHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 555554556778999999999986 222222211 1 1221 4679999999999975443333333343333321
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
+... ..+++++++||++|+ +++|+++|...++|
T Consensus 153 --------------------------~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 153 --------------------------LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred --------------------------HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 0000 134689999999999 99999999998876
No 139
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.3e-24 Score=154.62 Aligned_cols=128 Identities=23% Similarity=0.377 Sum_probs=102.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeecc--ccceEEeeccc---ccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEP--NEDTFVLHSES---TKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
.+++.+|++|+||||++.+.+.++|...-++++.. ...+..++..- .-.++.+.+++|||+|+++|+++.-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 36788999999999999999999997655555432 22333333221 11344578999999999999999999999
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 195 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 195 (268)
.+-++++++|.++. .+|-.+.+|+.++..++.. .+.-|++++||+||.+.+.+
T Consensus 90 DAMGFlLiFDlT~e-qSFLnvrnWlSQL~~hAYc--E~PDivlcGNK~DL~~~R~V 142 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSE-QSFLNVRNWLSQLQTHAYC--ENPDIVLCGNKADLEDQRVV 142 (219)
T ss_pred hhccceEEEeccch-HHHHHHHHHHHHHHHhhcc--CCCCEEEEcCccchhhhhhh
Confidence 99999999999997 8999999999999888764 67779999999999875544
No 140
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=1.6e-21 Score=171.92 Aligned_cols=169 Identities=18% Similarity=0.165 Sum_probs=106.1
Q ss_pred CCccHHhHHHHHHHHHHHhHhhhccCChH---HHHHHHHHHH---HHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHH
Q 024385 9 LPEGMEQWKKELEEWLNRGIEFINQIPPT---QLYIACAVLL---LTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFY 82 (268)
Q Consensus 9 ~~~~~~~w~~~~~~~~~r~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~ 82 (268)
+.+.+.+|++.+-..+..+...+.-+.-. .......... +..+.... .....+...+|+++|++|+|||||+|
T Consensus 143 ls~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN 221 (442)
T TIGR00450 143 LDQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQDSLNQLLLSIIAELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLN 221 (442)
T ss_pred HHHHHHHHHHHHHHHHHHeeEECCcCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHH
Confidence 34556778877777766664444433211 1111111111 11111111 11223567899999999999999999
Q ss_pred HHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------HhhhccCCCEEEEEEeCCCCC
Q 024385 83 QLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LDEFLPQAAGIVFVVDALEFL 154 (268)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~ 154 (268)
+|++... ...+..+++++......+.++| ..+.+|||||+.++... ...+++.+|++++|+|++++
T Consensus 222 ~L~~~~~---aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~- 295 (442)
T TIGR00450 222 ALLKQDR---AIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQP- 295 (442)
T ss_pred HHhCCCC---cccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCC-
Confidence 9998753 1222334445555555566666 57899999998765433 23578899999999999987
Q ss_pred CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 155 PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
.+.... |+..+.. .+.|+++|+||+|+...
T Consensus 296 ~s~~~~--~l~~~~~------~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 296 LTKDDF--LIIDLNK------SKKPFILVLNKIDLKIN 325 (442)
T ss_pred CChhHH--HHHHHhh------CCCCEEEEEECccCCCc
Confidence 555443 5554432 57899999999999643
No 141
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=1.1e-21 Score=173.97 Aligned_cols=201 Identities=22% Similarity=0.219 Sum_probs=125.1
Q ss_pred CCccHHhHHHHHHHHHHHhHhhhccCChH------HHHHHHHHHHHHHHHH---HHHHHHhhcCCCeEEEEcCCCCcHHH
Q 024385 9 LPEGMEQWKKELEEWLNRGIEFINQIPPT------QLYIACAVLLLTTALL---LLLQVFRRKKSTTIVLAGLSGSGKTV 79 (268)
Q Consensus 9 ~~~~~~~w~~~~~~~~~r~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~ivG~~~~GKSs 79 (268)
+++.+..|++.+.+....+...+.-+.-. .........+...+.. ...+....+...+|+++|.+|+||||
T Consensus 151 l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSS 230 (449)
T PRK05291 151 LSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSS 230 (449)
T ss_pred HHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHH
Confidence 45667888887777766654333322211 1111111111111111 11111122457899999999999999
Q ss_pred HHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------HhhhccCCCEEEEEEeCC
Q 024385 80 LFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LDEFLPQAAGIVFVVDAL 151 (268)
Q Consensus 80 Li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~~~~~~~d~ii~v~d~~ 151 (268)
|+|+|++... ...+..+.++.......+.++| ..+.+|||||+.++... ...+++.+|++++|+|++
T Consensus 231 Lln~L~~~~~---a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s 305 (449)
T PRK05291 231 LLNALLGEER---AIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDAS 305 (449)
T ss_pred HHHHHhCCCC---cccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCC
Confidence 9999998764 1222233333343444444555 57899999998765432 234678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCC
Q 024385 152 EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPG 231 (268)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (268)
++ .+..... .+.. ..+.|+++|+||+|+....... .
T Consensus 306 ~~-~s~~~~~-~l~~--------~~~~piiiV~NK~DL~~~~~~~----------~------------------------ 341 (449)
T PRK05291 306 EP-LTEEDDE-ILEE--------LKDKPVIVVLNKADLTGEIDLE----------E------------------------ 341 (449)
T ss_pred CC-CChhHHH-HHHh--------cCCCCcEEEEEhhhccccchhh----------h------------------------
Confidence 87 4444332 2222 1678999999999996532211 0
Q ss_pred CCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 232 QAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 232 ~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|+ +++|+++|.+.+
T Consensus 342 --------~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 342 --------ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred --------ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 112368999999998 999999998765
No 142
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.89 E-value=5.9e-22 Score=157.59 Aligned_cols=127 Identities=22% Similarity=0.263 Sum_probs=97.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeec-ccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHS-ESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.||+++|++|||||||++++..+.|...+.+++........... .....+..+.+.+|||+|++++......|++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 48999999999999999999999886554444432211111110 01123556889999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCC----------------ccCCCCcEEEEeecCCCCCC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNST----------------VVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~piivv~nK~Dl~~~ 192 (268)
+|+|||+++. ++++.+..|+.++..... ....++|+++|+||+|+...
T Consensus 81 iIlVyDvtn~-~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNR-KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcCh-HHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 9999999998 899999999999876421 11257899999999999754
No 143
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.88 E-value=3.2e-22 Score=157.99 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=126.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++++++|.+|+|||+|+.++..+.|...+.++++ ..+.....+++..+.+.|+||+|++++......|++.+|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-----d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~ 76 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-----DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGD 76 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-----ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCc
Confidence 468999999999999999999999999776655554 344455666788899999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH-HHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI-RKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++||++++. .||+.+..++..+++... ...+|+++||||+|+...+....- -+.+..
T Consensus 77 gF~lVysitd~-~SF~~~~~l~~~I~r~~~--~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~----------------- 136 (196)
T KOG0395|consen 77 GFLLVYSITDR-SSFEEAKQLREQILRVKG--RDDVPIILVGNKCDLERERQVSEEEGKALAR----------------- 136 (196)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhhC--cCCCCEEEEEEcccchhccccCHHHHHHHHH-----------------
Confidence 99999999998 899999999999965443 266899999999999874322111 111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
...+.|+|+||+... +++++.-|..
T Consensus 137 ------------------~~~~~f~E~Sak~~~~v~~~F~~L~r 162 (196)
T KOG0395|consen 137 ------------------SWGCAFIETSAKLNYNVDEVFYELVR 162 (196)
T ss_pred ------------------hcCCcEEEeeccCCcCHHHHHHHHHH
Confidence 234579999999986 8888776654
No 144
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=3.1e-22 Score=151.15 Aligned_cols=147 Identities=27% Similarity=0.348 Sum_probs=99.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------Hhhhc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------LDEFL 138 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------~~~~~ 138 (268)
.+|+++|.||||||||+|+|++.+. .+.. -|+++.......+...+ ..+.++|+||...+... ...++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~---~v~n-~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ---KVGN-WPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE---EEEE-STTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc---eecC-CCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHH
Confidence 3799999999999999999999885 2222 24444333333344445 58999999996544322 33444
Q ss_pred --cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 139 --PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 139 --~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
...|++++|+|++.. ++....+.++++ .++|+++|+||+|+..........+.+.+.
T Consensus 75 ~~~~~D~ii~VvDa~~l----~r~l~l~~ql~e------~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~----------- 133 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATNL----ERNLYLTLQLLE------LGIPVVVVLNKMDEAERKGIEIDAEKLSER----------- 133 (156)
T ss_dssp HHTSSSEEEEEEEGGGH----HHHHHHHHHHHH------TTSSEEEEEETHHHHHHTTEEE-HHHHHHH-----------
T ss_pred hhcCCCEEEEECCCCCH----HHHHHHHHHHHH------cCCCEEEEEeCHHHHHHcCCEECHHHHHHH-----------
Confidence 589999999999884 555555566665 689999999999987655433223333332
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHH
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 262 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l 262 (268)
.+++++++||++|+ +++|++.|
T Consensus 134 ------------------------Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 134 ------------------------LGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ------------------------HTS-EEEEBTTTTBTHHHHHHHH
T ss_pred ------------------------hCCCEEEEEeCCCcCHHHHHhhC
Confidence 23589999999999 99999875
No 145
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.88 E-value=5.5e-22 Score=156.94 Aligned_cols=166 Identities=23% Similarity=0.291 Sum_probs=107.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccccc--c----------------eeeccccceEEeecccccCCceeeEEEEeC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--V----------------TSMEPNEDTFVLHSESTKKGKIKPVHLVDV 124 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 124 (268)
+.++|+++|+.++|||||+.+|+...-.... . ............. .......++++||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~----~~~~~~~i~~iDt 77 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE----KNENNRKITLIDT 77 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE----BTESSEEEEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc----ccccccceeeccc
Confidence 4568999999999999999999754321000 0 0000111111111 0122368999999
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
|||.+|.......++.+|++|+|+|+.++. .....+.+..+.. .++|+++|+||+|+. ..+..+.+++
T Consensus 78 PG~~~f~~~~~~~~~~~D~ailvVda~~g~--~~~~~~~l~~~~~------~~~p~ivvlNK~D~~----~~~~~~~~~~ 145 (188)
T PF00009_consen 78 PGHEDFIKEMIRGLRQADIAILVVDANDGI--QPQTEEHLKILRE------LGIPIIVVLNKMDLI----EKELEEIIEE 145 (188)
T ss_dssp SSSHHHHHHHHHHHTTSSEEEEEEETTTBS--THHHHHHHHHHHH------TT-SEEEEEETCTSS----HHHHHHHHHH
T ss_pred ccccceeecccceecccccceeeeeccccc--ccccccccccccc------cccceEEeeeeccch----hhhHHHHHHH
Confidence 999999999999999999999999999872 2334444444433 688999999999998 2222222222
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCC-ceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCH-NKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~-~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+.+..... .-. ..++++++||++|. +++|+++|.+++|
T Consensus 146 ~~~~l~~~~~-----------------------~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 146 IKEKLLKEYG-----------------------ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHTT-----------------------STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHHhccccc-----------------------cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1112100100 001 35799999999999 9999999999987
No 146
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.88 E-value=6e-21 Score=152.97 Aligned_cols=155 Identities=21% Similarity=0.266 Sum_probs=101.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------ 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------ 133 (268)
+..++|+++|++|||||||+|++++..+... ..++..+.... +...+. ..+.+|||||+.+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~------~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~ 111 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRR------LRLPDG-REVLLTDTVGFIRDLPHQLVEAF 111 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEE------EEecCC-ceEEEeCCCccccCCCHHHHHHH
Confidence 4568999999999999999999998864221 12233322221 122232 37899999998432111
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
....+..+|++++|+|++++ .+......+...+.... ..+.|+++|+||+|+....... ....
T Consensus 112 ~~~~~~~~~~d~ii~v~D~~~~-~~~~~~~~~~~~l~~~~---~~~~~viiV~NK~Dl~~~~~~~-------~~~~---- 176 (204)
T cd01878 112 RSTLEEVAEADLLLHVVDASDP-DYEEQIETVEKVLKELG---AEDIPMILVLNKIDLLDDEELE-------ERLE---- 176 (204)
T ss_pred HHHHHHHhcCCeEEEEEECCCC-ChhhHHHHHHHHHHHcC---cCCCCEEEEEEccccCChHHHH-------HHhh----
Confidence 11235689999999999987 55555444443332221 1578999999999997543211 0000
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|. +++++++|.+.+
T Consensus 177 ----------------------------~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 177 ----------------------------AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ----------------------------cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 223579999999998 999999998764
No 147
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.87 E-value=3.2e-21 Score=147.24 Aligned_cols=158 Identities=17% Similarity=0.238 Sum_probs=110.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.+||+++|++|+|||||++++..+.+.....+ +.+..........++..+.+.+||+||+.++...+..+.+.+++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 76 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKP----GTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVES 76 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCC----CceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhE
Confidence 36899999999999999999998875433322 22222222223344544688999999999999888888999999
Q ss_pred EEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++.++|......++.... .+...+..... .+.|+++++||+|+.... ..+...+.+..
T Consensus 77 ~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~-------------- 135 (161)
T TIGR00231 77 SLRVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAK----LKTHVAFLFAK-------------- 135 (161)
T ss_pred EEEEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcch----hhHHHHHHHhh--------------
Confidence 999999977523444444 55555554432 388999999999997644 12222222221
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
....+++++||++|. +++++++|.
T Consensus 136 -----------------~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 136 -----------------LNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred -----------------ccCCceEEeecCCCCCHHHHHHHhh
Confidence 122369999999999 999999885
No 148
>PLN00023 GTP-binding protein; Provisional
Probab=99.87 E-value=2.1e-21 Score=161.79 Aligned_cols=130 Identities=21% Similarity=0.270 Sum_probs=98.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccc--eEEeecc----cc---cCCceeeEEEEeCCCCCCchh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNED--TFVLHSE----ST---KKGKIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~--~~~~~~~----~~---~~~~~~~~~i~DtpG~~~~~~ 132 (268)
...+||+++|+.|||||||++++.++.+.....+++..... ...+... .. .+++.+.++||||+|+++|+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 45789999999999999999999999875544444433221 1111100 00 113457899999999999999
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCc---------cCCCCcEEEEeecCCCCCC
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTV---------VKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~piivv~nK~Dl~~~ 192 (268)
.+..|++++|++|+|||+++. .++..+..|+..+...... ...++|++||+||+||...
T Consensus 99 L~~~yyr~AdgiILVyDITdr-~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQR-RTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999997 8899999999998765310 0135899999999999654
No 149
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=3.3e-21 Score=164.19 Aligned_cols=160 Identities=18% Similarity=0.234 Sum_probs=109.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-------chhhH
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-------LRPKL 134 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-------~~~~~ 134 (268)
...|+++|.||||||||+++++..+... ...+|..|..+...+. ++ ..+.+||+||..+ +...+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-----~~--~~~~i~D~PGli~ga~~~~gLg~~f 230 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-----DY--KSFVIADIPGLIEGASEGAGLGHRF 230 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-----CC--cEEEEEeCCCccCCCCccccHHHHH
Confidence 4689999999999999999999765321 1234455544433221 22 4789999999753 22334
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
..+++.++++++|+|+++. ++++....|..++...... -.++|+++|+||+|+....... .+.+....+
T Consensus 231 lrhie~a~vlI~ViD~s~~-~s~e~~~~~~~EL~~~~~~-L~~kp~IIV~NKiDL~~~~~~~--~~~~~~~~~------- 299 (335)
T PRK12299 231 LKHIERTRLLLHLVDIEAV-DPVEDYKTIRNELEKYSPE-LADKPRILVLNKIDLLDEEEER--EKRAALELA------- 299 (335)
T ss_pred HHHhhhcCEEEEEEcCCCC-CCHHHHHHHHHHHHHhhhh-cccCCeEEEEECcccCCchhHH--HHHHHHHHH-------
Confidence 5567789999999999986 5688888887777654210 1478999999999997543221 111111111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.+++++||++++ +++++++|.+.+
T Consensus 300 -------------------------~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 300 -------------------------ALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred -------------------------hcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 112478999999999 999999998765
No 150
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=2.9e-21 Score=163.10 Aligned_cols=160 Identities=23% Similarity=0.340 Sum_probs=106.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------H
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------L 134 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~ 134 (268)
+...|+++|++|||||||+|+|++.++ ...+..+++++.........++ ..+.++||||..+.... .
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~---~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~ 78 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKI---SIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAA 78 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCce---eecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHH
Confidence 445799999999999999999998875 2223334333333332222222 58999999998654322 3
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
...+..+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... .+..... ++.+..
T Consensus 79 ~~~~~~~D~il~vvd~~~~---~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~--~~~l~~~----~~~l~~--- 141 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEK---IGPGDEFILEKLKK-----VKTPVILVLNKIDLVKD--KEELLPL----LEELSE--- 141 (292)
T ss_pred HHHHhcCCEEEEEEeCCCC---CChhHHHHHHHHhh-----cCCCEEEEEECCcCCCC--HHHHHHH----HHHHHh---
Confidence 3466889999999999984 22333444444432 57899999999999732 2222222 222110
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....+++++||++|. +++++++|.+.+++
T Consensus 142 ------------------------~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 142 ------------------------LMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred ------------------------hCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 0123478999999998 99999999998864
No 151
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.87 E-value=9.4e-21 Score=162.47 Aligned_cols=152 Identities=23% Similarity=0.328 Sum_probs=118.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD------ 135 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~------ 135 (268)
+...+++++|.||+|||||+|.|.+... .+.|--|+++++.....+.++| +++.++||+|..+......
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~---AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeR 289 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDR---AIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIER 289 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCc---eEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHH
Confidence 6789999999999999999999999876 7778888999999999999999 8999999999876544432
Q ss_pred --hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 136 --EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 --~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
..+++||.+++|+|++.+ .......+...+ ..+.|+++|.||+|+.........
T Consensus 290 s~~~i~~ADlvL~v~D~~~~---~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~~~~~~~~--------------- 345 (454)
T COG0486 290 AKKAIEEADLVLFVLDASQP---LDKEDLALIELL------PKKKPIIVVLNKADLVSKIELESE--------------- 345 (454)
T ss_pred HHHHHHhCCEEEEEEeCCCC---CchhhHHHHHhc------ccCCCEEEEEechhcccccccchh---------------
Confidence 467889999999999995 122222222211 378999999999999875432111
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
......+++.+||++|+ ++.|.+.|.+.+
T Consensus 346 ------------------------~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 346 ------------------------KLANGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred ------------------------hccCCCceEEEEecCccCHHHHHHHHHHHH
Confidence 01223378999999998 999999988764
No 152
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=4.9e-21 Score=174.53 Aligned_cols=165 Identities=21% Similarity=0.275 Sum_probs=109.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC-------cccccceee--cc--ccceEEeeccccc---CCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS-------THQGTVTSM--EP--NEDTFVLHSESTK---KGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~-------~~~~~~~~~--~~--~~~~~~~~~~~~~---~~~~~~~~i~DtpG~~ 128 (268)
+.++++++|+.++|||||+++|+... +......+. +. +.+.......+.+ ++..+.+++||||||.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35689999999999999999998642 111111110 00 1111111111111 4556899999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
+|...+..+++.+|++|+|+|++++ .+......|.. ... .++|+++|+||+|+.... .+...+.+.+.+.
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g-~~~qt~~~~~~-~~~------~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg- 151 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQG-IEAQTLANVYL-ALE------NDLEIIPVINKIDLPSAD-PERVKKEIEEVIG- 151 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCC-CCHhHHHHHHH-HHH------cCCCEEEEEECcCCCccC-HHHHHHHHHHHhC-
Confidence 9999999999999999999999987 44444444433 222 578999999999986432 2222222222110
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.....++++||++|. +++|+++|.+.+||
T Consensus 152 -------------------------------~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 152 -------------------------------LDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred -------------------------------CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 001248999999999 99999999998874
No 153
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=2.4e-21 Score=148.36 Aligned_cols=148 Identities=22% Similarity=0.262 Sum_probs=95.7
Q ss_pred EEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh--------hHhhhcc
Q 024385 68 VLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP--------KLDEFLP 139 (268)
Q Consensus 68 ~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~--------~~~~~~~ 139 (268)
+++|.+|+|||||+++|.+.... ..+..+.++...........+ ..+.+|||||+.++.. ....+++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA---IVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE---eecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHH
Confidence 47999999999999999987531 111112222212222223334 5799999999988654 3446778
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
.+|++++|+|+.+... .. ..++...+.. .+.|+++|+||+|+...... .+. +..
T Consensus 76 ~~d~ii~v~d~~~~~~-~~--~~~~~~~~~~-----~~~piiiv~nK~D~~~~~~~---~~~----~~~----------- 129 (157)
T cd01894 76 EADVILFVVDGREGLT-PA--DEEIAKYLRK-----SKKPVILVVNKVDNIKEEDE---AAE----FYS----------- 129 (157)
T ss_pred hCCEEEEEEeccccCC-cc--HHHHHHHHHh-----cCCCEEEEEECcccCChHHH---HHH----HHh-----------
Confidence 8999999999987522 22 2233333332 46899999999999754221 111 110
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|+ +++++++|.+++
T Consensus 130 --------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 130 --------------------LGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred --------------------cCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 011157899999999 999999998763
No 154
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.87 E-value=3e-21 Score=148.16 Aligned_cols=147 Identities=27% Similarity=0.347 Sum_probs=96.9
Q ss_pred EEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------Hhhhcc--C
Q 024385 69 LAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------LDEFLP--Q 140 (268)
Q Consensus 69 ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------~~~~~~--~ 140 (268)
++|.+|+|||||++++.+..+..... ++++.......+.+++ ..+.+|||||+.++... ...++. .
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~----~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNW----PGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCC----CCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCC
Confidence 58999999999999999876432221 1111111112233344 47899999999876542 455564 8
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++++|+|+.+. .. ...++..+.. .++|+++|+||+|+..........+.+..
T Consensus 75 ~d~vi~v~d~~~~-~~---~~~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~---------------- 128 (158)
T cd01879 75 PDLIVNVVDATNL-ER---NLYLTLQLLE------LGLPVVVALNMIDEAEKRGIKIDLDKLSE---------------- 128 (158)
T ss_pred CcEEEEEeeCCcc-hh---HHHHHHHHHH------cCCCEEEEEehhhhcccccchhhHHHHHH----------------
Confidence 9999999999886 32 2233333332 57899999999999765432221111111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 129 -------------------~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 129 -------------------LLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred -------------------hhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 112478999999998 999999998764
No 155
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=3.7e-21 Score=153.13 Aligned_cols=165 Identities=22% Similarity=0.317 Sum_probs=104.2
Q ss_pred HHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC--------
Q 024385 57 QVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS-------- 128 (268)
Q Consensus 57 ~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-------- 128 (268)
+.......++|+++|++|+|||||+++++++.+......+ ++.+..... ... + ..+.+|||||+.
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~--~~~t~~~~~--~~~-~--~~l~l~DtpG~~~~~~~~~~ 89 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT--PGRTQLINF--FEV-N--DKLRLVDLPGYGYAKVSKEE 89 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC--CCceeEEEE--Eec-C--CeEEEeCCCCCCCcCCCchH
Confidence 3344467789999999999999999999987642212111 111111110 111 2 478999999963
Q ss_pred --CchhhHhhhccC---CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 129 --RLRPKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 129 --~~~~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
++......+++. ++++++|+|++.+ . .....++...+.. .+.|+++++||+|+......+...+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~--~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~ 161 (196)
T PRK00454 90 KEKWQKLIEEYLRTRENLKGVVLLIDSRHP-L--KELDLQMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVR 161 (196)
T ss_pred HHHHHHHHHHHHHhCccceEEEEEEecCCC-C--CHHHHHHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHH
Confidence 223334455554 4678889998875 2 2222233333332 5789999999999975433333333333
Q ss_pred HHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 204 KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
+.++. ....++++||++|+ +++++++|.+.++|
T Consensus 162 ~~l~~--------------------------------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 162 KALKF--------------------------------GDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHh--------------------------------cCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 22221 13478899999998 99999999999886
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=3.4e-21 Score=172.44 Aligned_cols=155 Identities=17% Similarity=0.228 Sum_probs=104.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC--------chhh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--------LRPK 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--------~~~~ 133 (268)
...++|+++|.+|||||||+|+|+++.. ......+++++........+.+ ..+.+|||||++. +...
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~---~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~ 110 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRRE---AVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQ 110 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCc---ccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHH
Confidence 3568999999999999999999998764 1222333444444444444555 4689999999863 3334
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
...+++.+|++|+|+|++++ .+.. ...+...+.. .++|+++|+||+|+..... +. .. ...
T Consensus 111 ~~~~~~~aD~il~VvD~~~~-~s~~--~~~i~~~l~~-----~~~piilV~NK~Dl~~~~~--~~----~~-~~~----- 170 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVG-ATAT--DEAVARVLRR-----SGKPVILAANKVDDERGEA--DA----AA-LWS----- 170 (472)
T ss_pred HHHHHHhCCEEEEEEECCCC-CCHH--HHHHHHHHHH-----cCCCEEEEEECccCCccch--hh----HH-HHh-----
Confidence 55678999999999999987 3322 2333333332 6799999999999864211 00 00 000
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+ ... ..+++||++|. +++|+++|.+.++
T Consensus 171 -------------~------------g~~-~~~~iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 171 -------------L------------GLG-EPHPVSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred -------------c------------CCC-CeEEEEcCCCCCcHHHHHHHHhhcc
Confidence 0 001 24689999998 9999999988764
No 157
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.86 E-value=4.1e-21 Score=164.91 Aligned_cols=153 Identities=22% Similarity=0.273 Sum_probs=99.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCC--chhh-----
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--LRPK----- 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--~~~~----- 133 (268)
..++|+++|.+|+|||||+|+|++..+... ..+|..+... .+.+.+. ..+.+|||||..+ ....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~------~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~ 260 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTR------RLDLPDG-GEVLLTDTVGFIRDLPHELVAAFR 260 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEE------EEEeCCC-ceEEEEecCcccccCCHHHHHHHH
Confidence 448999999999999999999998764211 1223333222 2233222 4789999999732 1111
Q ss_pred -HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 134 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 134 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
...++..+|++++|+|++++ .+......+. .++.... ..+.|+++|+||+|+.... .+. . ..
T Consensus 261 ~tle~~~~ADlil~VvD~s~~-~~~~~~~~~~-~~L~~l~--~~~~piIlV~NK~Dl~~~~---~v~----~-~~----- 323 (351)
T TIGR03156 261 ATLEEVREADLLLHVVDASDP-DREEQIEAVE-KVLEELG--AEDIPQLLVYNKIDLLDEP---RIE----R-LE----- 323 (351)
T ss_pred HHHHHHHhCCEEEEEEECCCC-chHHHHHHHH-HHHHHhc--cCCCCEEEEEEeecCCChH---hHH----H-HH-----
Confidence 12357889999999999987 5555544333 2333211 1478999999999996421 111 0 00
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|. +++|+++|.+.+
T Consensus 324 ---------------------------~~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 324 ---------------------------EGYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred ---------------------------hCCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 001247899999998 999999998754
No 158
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.8e-22 Score=148.21 Aligned_cols=167 Identities=20% Similarity=0.311 Sum_probs=127.4
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHHcCC---cc----cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGS---TH----QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 132 (268)
..+..+.++|+|+.++|||||+.++.... +. ....+++.-++++..+ .+ ..+.+||..|++..++
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v------~~--~~l~fwdlgGQe~lrS 84 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV------CN--APLSFWDLGGQESLRS 84 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee------cc--ceeEEEEcCChHHHHH
Confidence 34678999999999999999998875331 11 1112223333333222 22 5899999999999999
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
.|..|+..|+++||+||+++. +.++.....+..+..+... .++|+++.+||.|+.......++...+.. .+.+
T Consensus 85 lw~~yY~~~H~ii~viDa~~~-eR~~~~~t~~~~v~~~E~l--eg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~--- 157 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDR-ERFEESKTAFEKVVENEKL--EGAPVLVLANKQDLQNAMEAAELDGVFGL-AELI--- 157 (197)
T ss_pred HHHHHHHHhceeEEeecCCCH-HHHHHHHHHHHHHHHHHHh--cCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhc---
Confidence 999999999999999999997 7788888888888876554 89999999999999888777776665553 1111
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
-.....|.+|||++|+ |++-.+|+.+.++
T Consensus 158 --------------------------~~rd~~~~pvSal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 158 --------------------------PRRDNPFQPVSALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred --------------------------CCccCccccchhhhcccHHHHHHHHHHHHh
Confidence 0334689999999999 9999999988764
No 159
>PRK04213 GTP-binding protein; Provisional
Probab=99.86 E-value=6.7e-21 Score=152.34 Aligned_cols=162 Identities=22% Similarity=0.378 Sum_probs=98.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC-----------CCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH-----------SRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~-----------~~~ 130 (268)
....+|+++|++|||||||+|++.++.+.... .++.+..... ... + .+.+|||||. +.+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~----~~~~t~~~~~--~~~-~---~~~l~Dt~G~~~~~~~~~~~~~~~ 76 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGK----RPGVTRKPNH--YDW-G---DFILTDLPGFGFMSGVPKEVQEKI 76 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC----CCceeeCceE--Eee-c---ceEEEeCCccccccccCHHHHHHH
Confidence 35689999999999999999999987753322 2222221111 111 1 5799999994 445
Q ss_pred hhhHhhhcc----CCCEEEEEEeCCCCCCCH-H--------HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH
Q 024385 131 RPKLDEFLP----QAAGIVFVVDALEFLPNC-S--------AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF 197 (268)
Q Consensus 131 ~~~~~~~~~----~~d~ii~v~d~~~~~~~~-~--------~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~ 197 (268)
+..+..|+. .++++++|+|++.. ..+ . .....+...+.. .++|+++|+||+|+.... .+
T Consensus 77 ~~~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~--~~ 148 (201)
T PRK04213 77 KDEIVRYIEDNADRILAAVLVVDGKSF-IEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNR--DE 148 (201)
T ss_pred HHHHHHHHHhhhhhheEEEEEEeCccc-cccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcH--HH
Confidence 555555553 46789999998764 111 0 111222333322 579999999999996533 11
Q ss_pred HHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCCchhHHHHHHhhcC
Q 024385 198 IRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQVK 267 (268)
Q Consensus 198 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~~ 267 (268)
..+.+.+.++. .. .+. ....+++++||++|.++++++||.+.++
T Consensus 149 ~~~~~~~~~~~---------------------~~---~~~--~~~~~~~~~SA~~ggi~~l~~~l~~~~~ 192 (201)
T PRK04213 149 VLDEIAERLGL---------------------YP---PWR--QWQDIIAPISAKKGGIEELKEAIRKRLH 192 (201)
T ss_pred HHHHHHHHhcC---------------------Cc---ccc--ccCCcEEEEecccCCHHHHHHHHHHhhc
Confidence 11222211110 00 000 0013689999999999999999998765
No 160
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.86 E-value=7.6e-21 Score=161.84 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=106.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------hhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-------RPK 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~ 133 (268)
....|+++|.+|||||||+++++...... ...+|..|+.+...+ .+ ...+.+|||||+.+. ...
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~------~~-~~~~~i~D~PGli~~a~~~~gLg~~ 228 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV------DD-GRSFVIADIPGLIEGASEGAGLGHR 228 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe------CC-ceEEEEEeCCCcccCCcccccHHHH
Confidence 34689999999999999999999865321 112344444443322 22 147899999997532 223
Q ss_pred HhhhccCCCEEEEEEeCCCCC--CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 134 LDEFLPQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
+.+++..++++++|+|+++.. ++++....|..++..... ...+.|+++|+||+|+......++ +.+.+.+
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~-~l~~kp~IIV~NK~DL~~~~~~~~----~~~~l~~--- 300 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP-ELAEKPRIVVLNKIDLLDEEELAE----LLKELKK--- 300 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-hhccCCEEEEEeCccCCChHHHHH----HHHHHHH---
Confidence 445567899999999998641 345666666655544321 114789999999999975422211 1111111
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+.+++++||++++ +++++++|.+.++
T Consensus 301 ----------------------------~~~~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 301 ----------------------------ALGKPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred ----------------------------HcCCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 112468999999999 9999999998763
No 161
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.86 E-value=7.9e-22 Score=152.63 Aligned_cols=119 Identities=17% Similarity=0.223 Sum_probs=101.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccccc-CCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-KGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...|+++||+.++|||+|+..+..+.|+..+++++.. .+...+.+ +|+.+.+.+|||+|+++|..++.-.+.++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFd-----nys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~t 77 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFD-----NYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQT 77 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEc-----cceEEEEecCCCEEEEeeeecCCCcccccccccCCCCC
Confidence 4579999999999999999999999999888887753 23344566 48889999999999999988777789999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|++++||++.++ .+++.+ .+|+.++..+. ++.|+|+||+|.||..
T Consensus 78 dvfl~cfsv~~p-~S~~nv~~kW~pEi~~~c----p~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 78 DVFLLCFSVVSP-ESFENVKSKWIPEIKHHC----PNVPIILVGTKADLRD 123 (198)
T ss_pred CEEEEEEEcCCh-hhHHHHHhhhhHHHHhhC----CCCCEEEEeehHHhhh
Confidence 999999999998 788885 66777666654 8999999999999983
No 162
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=4e-21 Score=170.77 Aligned_cols=159 Identities=21% Similarity=0.216 Sum_probs=102.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh----------
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK---------- 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---------- 133 (268)
..+++++|.+|+|||||+|+|++.... ..+..+.++.......+..++ ..+.+|||||+.+....
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~---~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERV---IVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCee---ecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHH
Confidence 478999999999999999999987641 112222333333333333445 47899999998654322
Q ss_pred -HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 134 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 134 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
...+++.+|++|+|+|++++ .+... ...+..+.. .+.|+++|+||+|+.. ..+ ..+.+.+.+...
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~-~~~~~-~~~~~~~~~------~~~~iiiv~NK~Dl~~--~~~-~~~~~~~~~~~~--- 312 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEG-ITEQD-LRIAGLILE------AGKALVIVVNKWDLVK--DEK-TREEFKKELRRK--- 312 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCC-ccHHH-HHHHHHHHH------cCCcEEEEEECcccCC--CHH-HHHHHHHHHHHh---
Confidence 13467899999999999987 33322 233333322 5789999999999972 111 122222222211
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
+.. ...++++++||++|. ++++++++.+.
T Consensus 313 -----------------------~~~-~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 313 -----------------------LPF-LDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred -----------------------ccc-CCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 111 123689999999998 99998887654
No 163
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=1.1e-20 Score=146.86 Aligned_cols=158 Identities=21% Similarity=0.196 Sum_probs=99.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-----------
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP----------- 132 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~----------- 132 (268)
..+|+++|.+|+|||||++++++..... ....+..+..........++ ..+.+|||||+.+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~ 76 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI---VSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVL 76 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee---ccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHH
Confidence 4689999999999999999999875311 11112222122222233344 4678999999765421
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHH
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~ 210 (268)
....+++.+|++++|+|++++ .+... ...+..+.. .+.|+++++||+|+.... ..+.+.+.+.+.+.
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~-~~~~~-~~~~~~~~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 145 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEG-ITEQD-LRIAGLILE------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP--- 145 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCC-cchhH-HHHHHHHHh------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc---
Confidence 122356789999999999987 33322 223332222 568999999999997653 22222222222111
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
. ....+++++||++|+ ++++++++.+.
T Consensus 146 ---------------------------~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 146 ---------------------------F-LDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ---------------------------c-ccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 0 123579999999999 99999998764
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=4.5e-21 Score=171.63 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC----------chh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR----------LRP 132 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~----------~~~ 132 (268)
...+|+++|.+|||||||+|+|++..+. ..+..++++.......+..++ ..+.+|||||..+ +..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~---~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~ 284 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS---VVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYAS 284 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc---cccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHH
Confidence 4589999999999999999999987642 122223333333333344455 4678999999632 111
Q ss_pred h-HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 133 K-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 133 ~-~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
. ...+++.+|++++|+|++++ .+.... .++..+.. .++|+++|+||+|+..........+.+.+.+
T Consensus 285 ~~~~~~i~~ad~vilV~Da~~~-~s~~~~-~~~~~~~~------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l----- 351 (472)
T PRK03003 285 LRTHAAIEAAEVAVVLIDASEP-ISEQDQ-RVLSMVIE------AGRALVLAFNKWDLVDEDRRYYLEREIDREL----- 351 (472)
T ss_pred HHHHHHHhcCCEEEEEEeCCCC-CCHHHH-HHHHHHHH------cCCCEEEEEECcccCChhHHHHHHHHHHHhc-----
Confidence 1 12467899999999999997 455444 33443332 6789999999999975322222222221111
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. ...++++++||++|. ++++++.+.+.+
T Consensus 352 -------------------------~~-~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 352 -------------------------AQ-VPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred -------------------------cc-CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 10 122478999999998 999998887643
No 165
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.86 E-value=3.1e-21 Score=138.45 Aligned_cols=166 Identities=23% Similarity=0.401 Sum_probs=128.7
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..++.+++++|..|+|||||+++|.+... ..+.|+.+..... +..+|. +++++||.+|+...+..|..|+.+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~-----~hltpT~GFn~k~--v~~~g~-f~LnvwDiGGqr~IRpyWsNYyen 85 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-----RHLTPTNGFNTKK--VEYDGT-FHLNVWDIGGQRGIRPYWSNYYEN 85 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh-----hhccccCCcceEE--EeecCc-EEEEEEecCCccccchhhhhhhhc
Confidence 46789999999999999999999988753 2233333322211 222333 689999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
.|++|||+|+++. ..++++...+.++++.... ..+|+.|..||.|+..+...+++...+.- ..++
T Consensus 86 vd~lIyVIDS~D~-krfeE~~~el~ELleeeKl--~~vpvlIfankQdlltaa~~eeia~klnl--~~lr---------- 150 (185)
T KOG0074|consen 86 VDGLIYVIDSTDE-KRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLTAAKVEEIALKLNL--AGLR---------- 150 (185)
T ss_pred cceEEEEEeCCch-HhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHhhcchHHHHHhcch--hhhh----------
Confidence 9999999998886 7789999999999886554 78999999999999988777766544331 1110
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
...+++-+|||++++ +..-.+|+.....|
T Consensus 151 -------------------dRswhIq~csals~eg~~dg~~wv~sn~~~ 180 (185)
T KOG0074|consen 151 -------------------DRSWHIQECSALSLEGSTDGSDWVQSNPET 180 (185)
T ss_pred -------------------hceEEeeeCccccccCccCcchhhhcCCCC
Confidence 345789999999998 88888998876653
No 166
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=5.8e-21 Score=149.93 Aligned_cols=154 Identities=23% Similarity=0.294 Sum_probs=93.6
Q ss_pred HHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-------
Q 024385 57 QVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR------- 129 (268)
Q Consensus 57 ~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~------- 129 (268)
.++...+..+|+++|++|+|||||+|++.+..+......+...+.....+. .++ .+.+|||||...
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~----~~~---~~~liDtpG~~~~~~~~~~ 83 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE----VND---GFRLVDLPGYGYAKVSKEE 83 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE----eCC---cEEEEeCCCCccccCChhH
Confidence 344456789999999999999999999998763221111111111111111 122 589999999642
Q ss_pred ---chhhHhhhccC---CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 130 ---LRPKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 130 ---~~~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
+......|++. ++++++|+|++.+ - ......+...+.. .+.|+++|+||+|+......+...+.+.
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~-~--~~~~~~~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~ 155 (179)
T TIGR03598 84 KEKWQKLIEEYLEKRENLKGVVLLMDIRHP-L--KELDLEMLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIK 155 (179)
T ss_pred HHHHHHHHHHHHHhChhhcEEEEEecCCCC-C--CHHHHHHHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 22233455553 5799999999885 2 2222233333332 5789999999999975433333333333
Q ss_pred HHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-c
Q 024385 204 KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-I 255 (268)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i 255 (268)
+.+... ..+..++++||++|+ +
T Consensus 156 ~~l~~~------------------------------~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 156 KALKKD------------------------------ADDPSVQLFSSLKKTGI 178 (179)
T ss_pred HHHhhc------------------------------cCCCceEEEECCCCCCC
Confidence 333321 223479999999997 5
No 167
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.86 E-value=1.6e-20 Score=143.74 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=100.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------Hhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LDE 136 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~~ 136 (268)
.+|+++|++|+|||||++++.+..... .+..+.++...........+ ..+.+|||||+.++... ...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI---VSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe---ccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHH
Confidence 589999999999999999999876421 11112222222222223333 57899999998765432 234
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
++..+|++++|+|+++. .+......+.. ..+.|+++|+||+|+...... ..
T Consensus 77 ~~~~~~~~v~v~d~~~~-~~~~~~~~~~~---------~~~~~vi~v~nK~D~~~~~~~------~~------------- 127 (157)
T cd04164 77 AIEEADLVLFVIDASRG-LDEEDLEILEL---------PADKPIIVVLNKSDLLPDSEL------LS------------- 127 (157)
T ss_pred HHhhCCEEEEEEECCCC-CCHHHHHHHHh---------hcCCCEEEEEEchhcCCcccc------cc-------------
Confidence 66789999999999986 43333322221 168999999999999754322 00
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.....+++++||++|. +++|.++|.+.++
T Consensus 128 ----------------------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 157 (157)
T cd04164 128 ----------------------LLAGKPIIAISAKTGEGLDELKEALLELAG 157 (157)
T ss_pred ----------------------ccCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 0223579999999998 9999999988653
No 168
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=3.9e-20 Score=151.57 Aligned_cols=172 Identities=20% Similarity=0.195 Sum_probs=126.5
Q ss_pred cHHhHHHHHHHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCccc
Q 024385 12 GMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ 91 (268)
Q Consensus 12 ~~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~ 91 (268)
...+..+..+++++|+.+++++.++...|+.....++..++.+ +...++++|+|.||||||||++++++.+.
T Consensus 122 ~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~I------dp~~pTivVaG~PNVGKSSlv~~lT~Akp-- 193 (346)
T COG1084 122 DPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAI------DPDLPTIVVAGYPNVGKSSLVRKLTTAKP-- 193 (346)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC------CCCCCeEEEecCCCCcHHHHHHHHhcCCC--
Confidence 4566777778999999999999999999999988888887776 56789999999999999999999998775
Q ss_pred ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh---------hhc-cCCCEEEEEEeCCCCC-CCHHHH
Q 024385 92 GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD---------EFL-PQAAGIVFVVDALEFL-PNCSAA 160 (268)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~---------~~~-~~~d~ii~v~d~~~~~-~~~~~~ 160 (268)
.+.++..++....+.. +..++ .+++++||||.-+ ++.-. ..+ .-.++++|++|++..+ =+++..
T Consensus 194 -EvA~YPFTTK~i~vGh-fe~~~--~R~QvIDTPGlLD-RPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q 268 (346)
T COG1084 194 -EVAPYPFTTKGIHVGH-FERGY--LRIQVIDTPGLLD-RPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQ 268 (346)
T ss_pred -ccCCCCccccceeEee-eecCC--ceEEEecCCcccC-CChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHH
Confidence 3444444433332221 22223 5899999999764 22211 112 2368899999998753 257777
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHH
Q 024385 161 SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ 201 (268)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 201 (268)
...+.++... .+.|+++|+||+|.......+++...
T Consensus 269 ~~L~~eIk~~-----f~~p~v~V~nK~D~~~~e~~~~~~~~ 304 (346)
T COG1084 269 ISLLEEIKEL-----FKAPIVVVINKIDIADEEKLEEIEAS 304 (346)
T ss_pred HHHHHHHHHh-----cCCCeEEEEecccccchhHHHHHHHH
Confidence 7888877765 45899999999999866555554444
No 169
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=6.1e-21 Score=163.20 Aligned_cols=152 Identities=24% Similarity=0.278 Sum_probs=117.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch---------hhHh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR---------PKLD 135 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~---------~~~~ 135 (268)
+.|+++|.||||||||+|||++... .+.+-.|+++++.......+.+ ..+.++||+|.+... .+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~---AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI---AIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee---eEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHH
Confidence 6799999999999999999999876 6777788888888888888888 469999999987433 2344
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
..+..||++|||+|+..+ +...++.+.+++.. .++|+++|+||+|-... +.....+.
T Consensus 79 ~Ai~eADvilfvVD~~~G---it~~D~~ia~~Lr~-----~~kpviLvvNK~D~~~~---e~~~~efy------------ 135 (444)
T COG1160 79 IAIEEADVILFVVDGREG---ITPADEEIAKILRR-----SKKPVILVVNKIDNLKA---EELAYEFY------------ 135 (444)
T ss_pred HHHHhCCEEEEEEeCCCC---CCHHHHHHHHHHHh-----cCCCEEEEEEcccCchh---hhhHHHHH------------
Confidence 567889999999999997 45556666666653 67999999999997622 11111111
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+ +--+.+++||..|. +.+|.+++.+.++
T Consensus 136 ----------sl-------------G~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 136 ----------SL-------------GFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred ----------hc-------------CCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 11 11257899999999 9999999999873
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.86 E-value=2e-20 Score=169.75 Aligned_cols=162 Identities=19% Similarity=0.287 Sum_probs=110.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|+|||||++++.+..+.......++...+.+.+. +.+. ..+++||||||++|...+..+++.+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~----~~~~-~~i~~iDTPGhe~F~~~r~rga~~a 159 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVE----NEDG-KMITFLDTPGHEAFTSMRARGAKVT 159 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEE----ECCC-cEEEEEECCCCcchhhHHHhhhccC
Confidence 4678999999999999999999998877543333333333332222 2221 2789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|++++ . ..+..+.+..... .++|+++++||+|+... ..+.+.+.+.. ....
T Consensus 160 DiaILVVda~dg-v-~~qT~e~i~~~~~------~~vPiIVviNKiDl~~~-~~e~v~~~L~~----~g~~--------- 217 (587)
T TIGR00487 160 DIVVLVVAADDG-V-MPQTIEAISHAKA------ANVPIIVAINKIDKPEA-NPDRVKQELSE----YGLV--------- 217 (587)
T ss_pred CEEEEEEECCCC-C-CHhHHHHHHHHHH------cCCCEEEEEECcccccC-CHHHHHHHHHH----hhhh---------
Confidence 999999999885 2 2333333332222 67899999999999653 33333333221 1000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
-..+...++++++||++|+ +++++++|..
T Consensus 218 --------------~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 218 --------------PEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred --------------HHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 0011234589999999999 9999999854
No 171
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.86 E-value=6e-21 Score=144.08 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=86.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC-----CchhhHhhhccC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS-----RLRPKLDEFLPQ 140 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-----~~~~~~~~~~~~ 140 (268)
||+++|++|||||||++++.++.+. ..++.+ .. +.-.+|||||+. .++... ..++.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-~~-----------~~~~~iDt~G~~~~~~~~~~~~~-~~~~~ 62 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-VE-----------YNDGAIDTPGEYVENRRLYSALI-VTAAD 62 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------ccccee-EE-----------EcCeeecCchhhhhhHHHHHHHH-HHhhc
Confidence 7999999999999999999987642 111111 11 111689999973 222222 35789
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++++|+|++++ .++.. ..|. .. ...|+++|+||+|+.+.... .+...+.++.
T Consensus 63 ad~vilv~d~~~~-~s~~~-~~~~-~~--------~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~------------ 116 (142)
T TIGR02528 63 ADVIALVQSATDP-ESRFP-PGFA-SI--------FVKPVIGLVTKIDLAEADVD---IERAKELLET------------ 116 (142)
T ss_pred CCEEEEEecCCCC-CcCCC-hhHH-Hh--------ccCCeEEEEEeeccCCcccC---HHHHHHHHHH------------
Confidence 9999999999997 44432 2222 21 12499999999999642211 1111111111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
....+++++||++|+ +++++++|.
T Consensus 117 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 117 -------------------AGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred -------------------cCCCcEEEEecCCCCCHHHHHHHHh
Confidence 111268999999999 999999885
No 172
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=1.4e-20 Score=150.54 Aligned_cols=117 Identities=20% Similarity=0.173 Sum_probs=78.2
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
..+.+|||||++++.......+..+|++++|+|++++ .........+..+... ...|+++|+||+|+.......
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~-~~~~~t~~~l~~~~~~-----~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP-CPQPQTSEHLAALEIM-----GLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC-CCCcchHHHHHHHHHc-----CCCcEEEEEEchhccCHHHHH
Confidence 5789999999999888888888899999999999974 1111222233222221 235799999999997532222
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
...+.+.+.++.. ....++++++||++|+ +++|+++|.+.+|+
T Consensus 157 ~~~~~i~~~~~~~-----------------------------~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 157 ENYEQIKKFVKGT-----------------------------IAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHhcc-----------------------------ccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 2222222211110 0124579999999999 99999999998764
No 173
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.1e-21 Score=138.88 Aligned_cols=163 Identities=24% Similarity=0.424 Sum_probs=127.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.++.+++++|..|+||||++.++.-++... +.+++..+....++ ++.++++||..|+...++.|+.|+...
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve~v~y--------KNLk~~vwdLggqtSirPyWRcYy~dt 86 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVETVPY--------KNLKFQVWDLGGQTSIRPYWRCYYADT 86 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcccccc--------ccccceeeEccCcccccHHHHHHhccc
Confidence 378899999999999999999988776432 34444444333333 227899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|||+|+++. ..+......+..++.+... ....+++++||+|...+....++...+. ++.++
T Consensus 87 ~avIyVVDssd~-dris~a~~el~~mL~E~eL--q~a~llv~anKqD~~~~~t~~E~~~~L~--l~~Lk----------- 150 (182)
T KOG0072|consen 87 DAVIYVVDSSDR-DRISIAGVELYSMLQEEEL--QHAKLLVFANKQDYSGALTRSEVLKMLG--LQKLK----------- 150 (182)
T ss_pred ceEEEEEeccch-hhhhhhHHHHHHHhccHhh--cCceEEEEeccccchhhhhHHHHHHHhC--hHHHh-----------
Confidence 999999999998 6677778888888887654 5688999999999988777766655543 22210
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
...++++++||.+|+ +++..+||.+-++
T Consensus 151 ------------------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 151 ------------------DRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred ------------------hheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 345799999999999 9999999987654
No 174
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.85 E-value=3.1e-20 Score=168.30 Aligned_cols=184 Identities=18% Similarity=0.266 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccc------------cCCceeeEEEEeCCCCCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST------------KKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~i~DtpG~~~~ 130 (268)
+.+.|+++|++|+|||||+++|.+..+......+++.+.+....+.... +......+.+||||||+.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 5678999999999999999999988764332222333223222221110 0011124899999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--------------HH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------KE 196 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~~ 196 (268)
...+..+++.+|++++|+|++++.. ......+. ++.. .++|+++++||+|+..... .+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~--~qt~e~i~-~l~~-----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFK--PQTQEALN-ILRM-----YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCC--HhHHHHHH-HHHH-----cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 9999999999999999999998521 11122222 2222 5789999999999974211 11
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
.+.+.+.+.+..+... ....+...+.. .........++++++||++|+ +++|.+||..
T Consensus 155 ~v~~~~~~~~~~lv~~---l~~~G~~~e~~-------~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIK---LHEEGFEAERF-------DRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHH---HHhcCccHHhh-------hhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 1111111111111000 00000000000 001123456899999999999 9999998864
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=2.6e-20 Score=171.47 Aligned_cols=166 Identities=17% Similarity=0.255 Sum_probs=112.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|+|||||+++|....+.......++...+.+... ....+....+++||||||+.|...+..+++.+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~--~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVE--FEYKDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEE--EEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 4678999999999999999999998776443333333333323222 22223347899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+.++. . ....+.+..+.. .++|+++|+||+|+... ..+.+.+.+... +.+
T Consensus 320 DiaILVVDA~dGv-~-~QT~E~I~~~k~------~~iPiIVViNKiDl~~~-~~e~v~~eL~~~-~ll------------ 377 (742)
T CHL00189 320 DIAILIIAADDGV-K-PQTIEAINYIQA------ANVPIIVAINKIDKANA-NTERIKQQLAKY-NLI------------ 377 (742)
T ss_pred CEEEEEEECcCCC-C-hhhHHHHHHHHh------cCceEEEEEECCCcccc-CHHHHHHHHHHh-ccc------------
Confidence 9999999998862 1 222233332221 67899999999999753 223333322210 000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
-......++++++||++|+ +++|+++|...
T Consensus 378 --------------~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 378 --------------PEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred --------------hHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 0001234689999999998 99999998764
No 176
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.85 E-value=3.6e-20 Score=146.69 Aligned_cols=169 Identities=19% Similarity=0.196 Sum_probs=103.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccc-------ccee-----eccccceEEeecccccCCceeeEEEEeCCCCCCch
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQG-------TVTS-----MEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
..+|+++|+.++|||||+++|+......+ .... ...+.+...........+ ..+.++||||+.++.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC--eEEEEEECcCHHHHH
Confidence 46899999999999999999975411000 0000 011111111111122233 578999999999888
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
......+..+|++++|+|+..+. .......+..+.. .++| +++|+||+|+... ++..+.+.+++...-
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~------~~~~~iIvviNK~D~~~~---~~~~~~~~~~i~~~l 148 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGP--MPQTREHLLLARQ------VGVPYIVVFLNKADMVDD---EELLELVEMEVRELL 148 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCcEEEEEeCCCCCCc---HHHHHHHHHHHHHHH
Confidence 88888899999999999998862 1223333333332 4666 7899999999632 222233333333321
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-c----------hhHHHHHHhhcCC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-I----------SQVEQFIREQVKP 268 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i----------~~l~~~l~~~~~p 268 (268)
.... | -..+++++++||++|. + ..|++.|....+|
T Consensus 149 ~~~g---------------------~--~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~ 194 (195)
T cd01884 149 SKYG---------------------F--DGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred HHhc---------------------c--cccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhCCCC
Confidence 1000 1 0235799999999987 4 3677777766654
No 177
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.85 E-value=3.9e-20 Score=142.66 Aligned_cols=157 Identities=25% Similarity=0.322 Sum_probs=100.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------Hh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------LD 135 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~~ 135 (268)
..+|+++|++|+|||||++++.+..... .+..+.............. ...+.+|||||....... ..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI---VSPKPQTTRNRIRGIYTDD--DAQIIFVDTPGIHKPKKKLGERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe---ccCCCCceeceEEEEEEcC--CeEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 5689999999999999999999875421 1111111111111111112 257899999998754432 33
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
.++..+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... .+.+.+.+.. +..
T Consensus 78 ~~~~~~d~i~~v~d~~~~---~~~~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~--~~~~~~~~~~-~~~------- 139 (168)
T cd04163 78 SALKDVDLVLFVVDASEP---IGEGDEFILELLKK-----SKTPVILVLNKIDLVKD--KEDLLPLLEK-LKE------- 139 (168)
T ss_pred HHHHhCCEEEEEEECCCc---cCchHHHHHHHHHH-----hCCCEEEEEEchhcccc--HHHHHHHHHH-HHh-------
Confidence 457889999999999986 22233334333332 46899999999999732 2222222211 111
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+++++|+++++ +++++++|.+++
T Consensus 140 -----------------------~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 140 -----------------------LGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred -----------------------ccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 0123478999999999 999999998764
No 178
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.85 E-value=2.5e-20 Score=145.55 Aligned_cols=155 Identities=24% Similarity=0.249 Sum_probs=100.3
Q ss_pred EEcCCCCcHHHHHHHHHcCCcc--cccceeeccccceEEeecccccC-CceeeEEEEeCCCCCCc----hh---hHhhhc
Q 024385 69 LAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKK-GKIKPVHLVDVPGHSRL----RP---KLDEFL 138 (268)
Q Consensus 69 ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~----~~---~~~~~~ 138 (268)
++|++|||||||+|+|.+.... ....++..+..+.. ... + ..+.+|||||+.+. .. ....++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~------~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVV------EVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEE------EcCCC--CeEEEEeccccchhhhcCCCccHHHHHHH
Confidence 5899999999999999988641 11122333332222 223 3 57899999997431 11 234567
Q ss_pred cCCCEEEEEEeCCCCC-----CCHHHHHHHHHHHHhcCCc----cCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 139 PQAAGIVFVVDALEFL-----PNCSAASEYLYDILTNSTV----VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~-----~~~~~~~~~l~~~~~~~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
+.+|++++|+|+.+.. .++.....+...+...... ...+.|+++|+||+|+.......... .....
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~-- 147 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELA-- 147 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHh--
Confidence 8899999999999862 3466666666666543210 01478999999999997543322211 00000
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.....+++++||++|. ++++.+++.+.
T Consensus 148 -----------------------------~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 148 -----------------------------LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred -----------------------------cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 0223469999999998 99999998765
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=4e-20 Score=171.63 Aligned_cols=161 Identities=18% Similarity=0.273 Sum_probs=111.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.+.|+++|+.|+|||||+++|....+.......++...+.+.+ .+.+ ..++|||||||.+|...+..+++.+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v----~~~~--~~ItfiDTPGhe~F~~m~~rga~~a 361 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQV----ETNG--GKITFLDTPGHEAFTAMRARGAQVT 361 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEE----EECC--EEEEEEECCCCccchhHHHhhhhhC
Confidence 578899999999999999999999877644333333333333322 2234 5799999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|||++++ . .......+..... .++|++|++||+|+... ..+.+...+.. .+.+
T Consensus 362 DiaILVVdAddG-v-~~qT~e~i~~a~~------~~vPiIVviNKiDl~~a-~~e~V~~eL~~-~~~~------------ 419 (787)
T PRK05306 362 DIVVLVVAADDG-V-MPQTIEAINHAKA------AGVPIIVAINKIDKPGA-NPDRVKQELSE-YGLV------------ 419 (787)
T ss_pred CEEEEEEECCCC-C-CHhHHHHHHHHHh------cCCcEEEEEECcccccc-CHHHHHHHHHH-hccc------------
Confidence 999999999986 2 2233333332222 67999999999999653 23333333221 0000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
-..+...++++++||++|+ +++|+++|..
T Consensus 420 --------------~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 420 --------------PEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred --------------HHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 0011234689999999999 9999999864
No 180
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=4.3e-20 Score=172.61 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=106.0
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC--------chh
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--------LRP 132 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--------~~~ 132 (268)
.....+|+++|.+|||||||+|+|++... ...+..+++++........+++ ..+.+|||||.+. +..
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~---~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~ 346 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRRE---AVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIAS 346 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCc---eeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHH
Confidence 34567899999999999999999998754 2223334444444444444455 5789999999764 234
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
....+++.+|++|+|+|++++ +......+...+.. .++|+++|+||+|+.... ... .. ...
T Consensus 347 ~~~~~~~~aD~iL~VvDa~~~---~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~--~~~----~~-~~~---- 407 (712)
T PRK09518 347 QAQIAVSLADAVVFVVDGQVG---LTSTDERIVRMLRR-----AGKPVVLAVNKIDDQASE--YDA----AE-FWK---- 407 (712)
T ss_pred HHHHHHHhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEECcccccch--hhH----HH-HHH----
Confidence 455678999999999999875 23333334444432 689999999999985421 100 00 000
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+... ..+++||++|. +++|+++|.+.++
T Consensus 408 --------------------------lg~~-~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 408 --------------------------LGLG-EPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred --------------------------cCCC-CeEEEECCCCCCchHHHHHHHHhcc
Confidence 0111 24689999999 9999999998765
No 181
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.84 E-value=2.7e-19 Score=144.09 Aligned_cols=189 Identities=20% Similarity=0.299 Sum_probs=116.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCc--ccc---cc-------------eeeccccceEEeecc--cccCCceeeEEEEeC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGST--HQG---TV-------------TSMEPNEDTFVLHSE--STKKGKIKPVHLVDV 124 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~--~~~---~~-------------~~~~~~~~~~~~~~~--~~~~~~~~~~~i~Dt 124 (268)
++|+++|+.++|||||+.+|+...- ... .. .++........+... ...+++.+.+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4799999999999999999975421 000 00 000000001111100 011244578999999
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---CCCHHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIRKQ 201 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~~~~~~~~~~ 201 (268)
||+.+|......+++.+|++++|+|+.++ .. ......+..... .++|+++|+||+|+.. ..++++..+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g-~~-~~t~~~l~~~~~------~~~p~ilviNKiD~~~~e~~~~~~~~~~~ 152 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEG-VC-VQTETVLRQALK------ERVKPVLVINKIDRLILELKLSPEEAYQR 152 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCC-CC-HHHHHHHHHHHH------cCCCEEEEEECCCcchhhhcCCHHHHHHH
Confidence 99999999999999999999999999987 32 233334443333 5689999999999862 2356666777
Q ss_pred HHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC---------CchhHHHHHHhhcCC
Q 024385 202 MEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG---------EISQVEQFIREQVKP 268 (268)
Q Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g---------~i~~l~~~l~~~~~p 268 (268)
+.+.+++++........++..+. ......|+...++ ++.+||+.| .+-.+++.|.+++||
T Consensus 153 ~~~ii~~~n~~i~~~~~~~~~~~-----~~~~~~~~p~~gn--v~f~S~~~gw~f~~~~f~~~~~~~~~~~~~~~~ 221 (222)
T cd01885 153 LARIIEQVNAIIGTYADEEFKEK-----DDEKWYFSPQKGN--VAFGSALHGWGFTIIKFARIYAVLEMVVKHLPS 221 (222)
T ss_pred HHHHHHHHhHHHHhccccccccc-----CcCCcEEeeCCCc--EEEEecccCEEeccccccchHHHHHHHHhhCCC
Confidence 76666666554443322211100 0111234444443 555788876 266778888888876
No 182
>PTZ00099 rab6; Provisional
Probab=99.84 E-value=3.8e-20 Score=144.48 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=98.7
Q ss_pred cccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCC
Q 024385 99 PNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI 178 (268)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (268)
|+.+.......+.+++..+.+.||||||++++...+..|++.+|++|+|||+++. .+++.+..|+..+..... .+.
T Consensus 11 ~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~-~sf~~~~~w~~~i~~~~~---~~~ 86 (176)
T PTZ00099 11 STIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNR-QSFENTTKWIQDILNERG---KDV 86 (176)
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCC
Confidence 3343333334455667778999999999999999999999999999999999997 789999999998876532 578
Q ss_pred cEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-c
Q 024385 179 PVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-I 255 (268)
Q Consensus 179 piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i 255 (268)
|+++|+||+|+.... ..++..+. .+ ..+..|++|||++|. +
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~~----~~--------------------------------~~~~~~~e~SAk~g~nV 130 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQK----AQ--------------------------------EYNTMFHETSAKAGHNI 130 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHHH----HH--------------------------------HcCCEEEEEECCCCCCH
Confidence 999999999996432 22221111 01 123478999999999 9
Q ss_pred hhHHHHHHhhcC
Q 024385 256 SQVEQFIREQVK 267 (268)
Q Consensus 256 ~~l~~~l~~~~~ 267 (268)
+++++||.+.++
T Consensus 131 ~~lf~~l~~~l~ 142 (176)
T PTZ00099 131 KVLFKKIAAKLP 142 (176)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 183
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.83 E-value=8.7e-20 Score=138.01 Aligned_cols=155 Identities=25% Similarity=0.308 Sum_probs=105.9
Q ss_pred EEcCCCCcHHHHHHHHHcCCc-ccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEE
Q 024385 69 LAGLSGSGKTVLFYQLRDGST-HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 147 (268)
Q Consensus 69 ivG~~~~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v 147 (268)
++|++|+|||||++++.+... .....++. .... .......+....+.+||+||+..+......+++.+|++++|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~----~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 75 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFY----SKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILV 75 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hhee----eEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEE
Confidence 589999999999999998765 22222222 2211 11222223346899999999998888888899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccC
Q 024385 148 VDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTL 227 (268)
Q Consensus 148 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (268)
+|++++ .+......++....... ...+.|+++++||+|+.......... ......
T Consensus 76 ~d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~-------------------- 130 (157)
T cd00882 76 YDVTDR-ESFENVKEWLLLILINK--EGENIPIILVGNKIDLPEERVVSEEE--LAEQLA-------------------- 130 (157)
T ss_pred EECcCH-HHHHHHHHHHHHHHHhh--ccCCCcEEEEEeccccccccchHHHH--HHHHHH--------------------
Confidence 999997 55666666522222211 12789999999999997654433221 000000
Q ss_pred CCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 228 GIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 228 ~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
.....+++++||.+|. ++++++||.+
T Consensus 131 -----------~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 131 -----------KELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred -----------hhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 1335689999999998 9999999863
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=7.5e-20 Score=162.85 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh---------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------- 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------- 133 (268)
...+|+++|.+|+|||||+|++++... ...+..++++..........++ ..+.+|||||+.+....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~---~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~ 246 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEER---VIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSV 246 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc---eeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHH
Confidence 468999999999999999999998653 2222333344443333333444 46899999997543211
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
...+++.+|++|+|+|++++ .+... ...+..+.. .+.|+++|+||+|+.......++.+.+...+.
T Consensus 247 ~~~~~~~~~ad~~ilViD~~~~-~~~~~-~~i~~~~~~------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~---- 314 (435)
T PRK00093 247 IRTLKAIERADVVLLVIDATEG-ITEQD-LRIAGLALE------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLP---- 314 (435)
T ss_pred HHHHHHHHHCCEEEEEEeCCCC-CCHHH-HHHHHHHHH------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcc----
Confidence 23467899999999999987 33322 233333322 57899999999999743222222222221111
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
. ...++++++||++|. ++++++++.+
T Consensus 315 --------------------------~-~~~~~i~~~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 315 --------------------------F-LDYAPIVFISALTGQGVDKLLEAIDE 341 (435)
T ss_pred --------------------------c-ccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 0 123589999999998 9988887765
No 185
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=4.6e-20 Score=164.00 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=103.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC--------chhhHhhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--------LRPKLDEF 137 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--------~~~~~~~~ 137 (268)
+|+++|.+|||||||+|+|++... ......++.++........+++ ..+.+|||||+.. +......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~---~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD---AIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc---ceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 589999999999999999998763 2222233344333334444555 4799999999743 33445667
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
++.+|++++|+|+.++ +......+...++. .++|+++|+||+|+...... . .. +..
T Consensus 76 ~~~ad~vl~vvD~~~~---~~~~d~~i~~~l~~-----~~~piilVvNK~D~~~~~~~--~-~~----~~~--------- 131 (429)
T TIGR03594 76 IEEADVILFVVDGREG---LTPEDEEIAKWLRK-----SGKPVILVANKIDGKKEDAV--A-AE----FYS--------- 131 (429)
T ss_pred HhhCCEEEEEEeCCCC---CCHHHHHHHHHHHH-----hCCCEEEEEECccCCccccc--H-HH----HHh---------
Confidence 8999999999999986 22333334444432 57899999999998753321 0 00 110
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+..+++++||++|. ++++++++.+.++
T Consensus 132 ----------------------lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 132 ----------------------LGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred ----------------------cCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 111258999999999 9999999988764
No 186
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.83 E-value=1.2e-19 Score=165.63 Aligned_cols=163 Identities=21% Similarity=0.296 Sum_probs=108.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--ccc----ccc-e----------eeccccceEEeecccccCCceeeEEEEeC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ----GTV-T----------SMEPNEDTFVLHSESTKKGKIKPVHLVDV 124 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~----~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 124 (268)
.+.++++++|+.++|||||+.+|+... +.. ... . ++......+.+. ..+++.+.+++|||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~---~~dg~~~~lnLiDT 81 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYK---AKDGETYILNLIDT 81 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEE---ccCCCcEEEEEEEC
Confidence 356799999999999999999997532 111 000 0 011111111111 11455588999999
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
|||.+|...+..+++.+|++|+|+|++++ ........|. .... .+.|+++|+||+|+.... .+...+.+.+
T Consensus 82 PGh~dF~~~v~~sl~~aD~aILVVDas~g-v~~qt~~~~~-~~~~------~~lpiIvViNKiDl~~a~-~~~v~~ei~~ 152 (600)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVY-LALE------NDLEIIPVLNKIDLPAAD-PERVKQEIED 152 (600)
T ss_pred CCcHHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHH-HHHH------CCCCEEEEEECCCCCccc-HHHHHHHHHH
Confidence 99999999999999999999999999987 3333333332 2222 578999999999986532 2222222221
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.+. .....++++||++|. +++|+++|.+.+||
T Consensus 153 ~lg--------------------------------~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 153 VIG--------------------------------IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HhC--------------------------------CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 100 001248999999999 99999999998874
No 187
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.83 E-value=1.1e-19 Score=165.49 Aligned_cols=159 Identities=20% Similarity=0.210 Sum_probs=104.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC---cccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGS---THQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.|+++|++|+|||||+++|++.. ++.+.. ++.+.......+...+ ..+.+||+|||++|......++.++|
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~----rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD 75 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKK----RGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGID 75 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhc----CCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCC
Confidence 68999999999999999999643 221111 1111111111123334 68999999999999988889999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|+|++++. ..+..+.+.. +.. .++| +++|+||+|+.+....+...+.+...+... .
T Consensus 76 ~aILVVDa~~G~--~~qT~ehl~i-l~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~----~------- 136 (581)
T TIGR00475 76 AALLVVDADEGV--MTQTGEHLAV-LDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSY----I------- 136 (581)
T ss_pred EEEEEEECCCCC--cHHHHHHHHH-HHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHh----C-------
Confidence 999999999852 2333333332 222 4677 999999999975432222333333222210 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ ..+++++++||++|+ ++++.++|.+.+
T Consensus 137 --------------~---~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 137 --------------F---LKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred --------------C---CCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 0 124689999999998 999998887653
No 188
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.83 E-value=1.3e-19 Score=146.80 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=94.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||++++.++.+...+.++.... .........+..+.+.+|||+|+++++..+..|+.++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~ 80 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNL----DPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANG 80 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeee----eEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCE
Confidence 3799999999999999999999998865444433221 111112222224689999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 195 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 195 (268)
+++|+|......+.+....|+..+..... .+.|+++|+||+|+......
T Consensus 81 ~l~~~d~~~~~~~~~~~~~~~~~l~~~~~---~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 81 ILIVYDSTLRESSDELTEEWLEELRELAP---DDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred EEEEEecccchhhhHHHHHHHHHHHHhCC---CCceEEEEecccccccchhH
Confidence 99999999963555566666666665431 47999999999999876543
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=9.3e-20 Score=162.24 Aligned_cols=149 Identities=23% Similarity=0.270 Sum_probs=99.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC--------chhhHhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--------LRPKLDE 136 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--------~~~~~~~ 136 (268)
++|+++|.+|||||||+|+|.+.... .....+.++.........+++ ..+.+|||||+.. +......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~---~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA---IVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---eeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHH
Confidence 58999999999999999999987641 112223333333333344555 6899999999987 2333556
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+++.+|++|+|+|+.++. .....++..++.. .+.|+++|+||+|+... .... .+ ...
T Consensus 77 ~~~~ad~il~vvd~~~~~---~~~~~~~~~~l~~-----~~~piilv~NK~D~~~~--~~~~----~~-~~~-------- 133 (435)
T PRK00093 77 AIEEADVILFVVDGRAGL---TPADEEIAKILRK-----SNKPVILVVNKVDGPDE--EADA----YE-FYS-------- 133 (435)
T ss_pred HHHhCCEEEEEEECCCCC---CHHHHHHHHHHHH-----cCCcEEEEEECccCccc--hhhH----HH-HHh--------
Confidence 788999999999998862 2223333344432 47899999999997531 1111 10 000
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
.+.-.++++||++|. ++++++++.+
T Consensus 134 -----------------------lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 134 -----------------------LGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred -----------------------cCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 000137899999998 9999999876
No 190
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.2e-19 Score=160.28 Aligned_cols=161 Identities=20% Similarity=0.212 Sum_probs=101.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PK 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~ 133 (268)
....|+++|.||||||||+|+|++.+... ...+|..|..+ .+...+ ..+.+|||||..... ..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lG------vv~~~~--~~f~laDtPGliegas~g~gLg~~ 229 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLG------VVQAGD--TRFTVADVPGLIPGASEGKGLGLD 229 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEE------EEEECC--eEEEEEECCCCccccchhhHHHHH
Confidence 45689999999999999999999865421 11223333322 223333 579999999974321 22
Q ss_pred HhhhccCCCEEEEEEeCCCCC---CCHHHHHHHHHHHHhcCCc--------cCCCCcEEEEeecCCCCCCCCHHHHHHHH
Q 024385 134 LDEFLPQAAGIVFVVDALEFL---PNCSAASEYLYDILTNSTV--------VKKKIPVLICCNKTDKVTAHTKEFIRKQM 202 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~---~~~~~~~~~l~~~~~~~~~--------~~~~~piivv~nK~Dl~~~~~~~~~~~~l 202 (268)
...++..||++|+|+|+++.. +.+.....+..++...... ...+.|++||+||+|+.... +..+.+
T Consensus 230 fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~---el~e~l 306 (500)
T PRK12296 230 FLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR---ELAEFV 306 (500)
T ss_pred HHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH---HHHHHH
Confidence 344678899999999998531 2344443333333222100 01578999999999996432 122222
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+. ...++++++||++|+ +++|.++|.+.+
T Consensus 307 ~~~l~--------------------------------~~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 307 RPELE--------------------------------ARGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred HHHHH--------------------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 22121 113479999999998 999999998765
No 191
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.83 E-value=1.2e-19 Score=139.34 Aligned_cols=140 Identities=22% Similarity=0.251 Sum_probs=91.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh----HhhhccCC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK----LDEFLPQA 141 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~----~~~~~~~~ 141 (268)
+|+++|++|+|||||+|++.+... . ...+....+. +. .+|||||....... ....++.+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~----~---~~~~~~v~~~------~~----~~iDtpG~~~~~~~~~~~~~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT----L---ARKTQAVEFN------DK----GDIDTPGEYFSHPRWYHALITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc----c---CccceEEEEC------CC----CcccCCccccCCHHHHHHHHHHHhcC
Confidence 799999999999999999876431 1 1111112121 11 26999997432222 23447899
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++ ...|+..+. .+.|+++++||+|+... ..+.+. +.++..
T Consensus 66 d~il~v~d~~~~-~s~--~~~~~~~~~-------~~~~ii~v~nK~Dl~~~-~~~~~~----~~~~~~------------ 118 (158)
T PRK15467 66 DMLIYVHGANDP-ESR--LPAGLLDIG-------VSKRQIAVISKTDMPDA-DVAATR----KLLLET------------ 118 (158)
T ss_pred CEEEEEEeCCCc-ccc--cCHHHHhcc-------CCCCeEEEEEccccCcc-cHHHHH----HHHHHc------------
Confidence 999999999987 333 233443321 46799999999998542 222222 211110
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
....+++++||++|+ +++|++++.+.++
T Consensus 119 ------------------~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 119 ------------------GFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred ------------------CCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 112489999999999 9999999988653
No 192
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=2.4e-19 Score=153.52 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=121.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh---------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------- 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------- 133 (268)
...+|+++|.||+|||||+|++++++. .+.+..+++++..+...+.+++ ..+.++||+|..+=...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR---~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv 251 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER---VIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSV 251 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce---EEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEee
Confidence 458999999999999999999999876 6677778888888888888888 47899999996531111
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC--CCHHHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~l~~~l~~~ 209 (268)
....+..+|++++|+|++++ +.+....+..+..+ .+.+++||+||+|+... ...++.++.+.+.+..
T Consensus 252 ~rt~~aI~~a~vvllviDa~~~---~~~qD~~ia~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~- 322 (444)
T COG1160 252 ARTLKAIERADVVLLVIDATEG---ISEQDLRIAGLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPF- 322 (444)
T ss_pred hhhHhHHhhcCEEEEEEECCCC---chHHHHHHHHHHHH-----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcc-
Confidence 23456789999999999998 66666666666654 78999999999999876 3344444455443332
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
-.-.+++.+||++|. ++++++++.+
T Consensus 323 ------------------------------l~~a~i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 323 ------------------------------LDFAPIVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred ------------------------------ccCCeEEEEEecCCCChHHHHHHHHH
Confidence 223478899999998 9998888765
No 193
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.82 E-value=2.6e-19 Score=162.87 Aligned_cols=184 Identities=20% Similarity=0.278 Sum_probs=105.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccc--cCCce-----e-----eEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST--KKGKI-----K-----PVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~-----~~~i~DtpG~~~ 129 (268)
.+.+.|+++|++|+|||||+++|.+..+.......+..+.+.+..+.... ..+.. . .+.+||||||++
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 46778999999999999999999876543222222222222222111100 00100 0 268999999999
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--------------H
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------K 195 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~ 195 (268)
|...+..+++.+|++++|+|++++.. ......+. +... .++|+++++||+|+...-. .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~--~qt~e~i~-~~~~-----~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQ--PQTIEAIN-ILKR-----RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCC--HhHHHHHH-HHHH-----cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 99998889999999999999998511 12222222 2221 5789999999999863111 1
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 196 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 196 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
..+.+.++..+..+... ........... ....+....++++++||++|+ +++|.+.+.
T Consensus 156 ~~v~~~f~~~l~ev~~~---L~~~g~~~e~~-------~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 156 QRVQQELEEKLYELIGQ---LSELGFSADRF-------DRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred HHHHHHHHHHHHHHHHH---HHhcCCChhhh-------hhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 11222222222221111 00000000000 001223456899999999999 988877764
No 194
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.82 E-value=2e-19 Score=145.45 Aligned_cols=185 Identities=20% Similarity=0.223 Sum_probs=105.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeec----------cccce------EEee------------------cccc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSME----------PNEDT------FVLH------------------SEST 111 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~----------~~~~~------~~~~------------------~~~~ 111 (268)
+|+++|+.++|||||++++..+.+..+...... .+.+. ..+. ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999997766332111000 00000 0000 0011
Q ss_pred cCCceeeEEEEeCCCCCCchhhHhhhcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 112 KKGKIKPVHLVDVPGHSRLRPKLDEFLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 112 ~~~~~~~~~i~DtpG~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
..+ ..++++||||+++|.......+. .+|++++|+|+..+. .......+..+.. .++|+++|+||+|+
T Consensus 81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~------~~ip~ivvvNK~D~ 150 (224)
T cd04165 81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA------LNIPVFVVVTKIDL 150 (224)
T ss_pred eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEECccc
Confidence 112 57899999999998776666664 689999999998862 2223333333332 67899999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 190 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 190 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..........+.+.+.+.............+.++.... ...+. ....++++.+||++|+ +++|.++|...-
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~---~~~~~---~~~~~pi~~vSavtg~Gi~~L~~~L~~lp 222 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLA---ASNFS---SERIVPIFQVSNVTGEGLDLLHAFLNLLP 222 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeeh---hhcCC---ccccCcEEEeeCCCccCHHHHHHHHHhcC
Confidence 75433334444444333321111111100000110000 00011 1345689999999999 999998776543
No 195
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=2e-19 Score=163.65 Aligned_cols=168 Identities=20% Similarity=0.288 Sum_probs=113.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc--CCccccccee--------ecc--ccceEEeecccccCCceeeEEEEeCCCCCCchh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD--GSTHQGTVTS--------MEP--NEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~--~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 132 (268)
++|+++|+.++|||||+++|+. +.+....... .+. ..+.......+.+.+ +.+++||||||.+|..
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~ 79 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGG 79 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHH
Confidence 5899999999999999999986 3332111000 011 111111112233344 7899999999999999
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
.+..+++.+|++++|+|+.++ .......++..+.. .++|+++|+||+|+.... .+++.+.+...+..+..
T Consensus 80 ev~~~l~~aD~alLVVDa~~G--~~~qT~~~l~~a~~------~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~~g~- 149 (594)
T TIGR01394 80 EVERVLGMVDGVLLLVDASEG--PMPQTRFVLKKALE------LGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAELGA- 149 (594)
T ss_pred HHHHHHHhCCEEEEEEeCCCC--CcHHHHHHHHHHHH------CCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHhhcc-
Confidence 999999999999999999986 24556666666654 578999999999986543 33333333333322100
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC-----------CchhHHHHHHhhcCC
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG-----------EISQVEQFIREQVKP 268 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g-----------~i~~l~~~l~~~~~p 268 (268)
..-...++++++||++| .++.|++.|.+++|+
T Consensus 150 ------------------------~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 150 ------------------------DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ------------------------ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 00012357999999998 388999999998874
No 196
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=2.4e-19 Score=155.66 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=103.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------hhhHhhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-------RPKLDEF 137 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~~~~~ 137 (268)
..|+++|.||||||||+|+|++.+. .+ +-.|.+++.+....+...+. ..+.++||||..+- ......+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~---~v-s~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~ 234 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP---KV-ADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKH 234 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc---cc-cCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHH
Confidence 3799999999999999999998653 11 11222322222222222221 35899999997642 1223456
Q ss_pred ccCCCEEEEEEeCCCC--CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 138 LPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
+..+|++++|+|++.. .+.++....++..+..... .-.+.|+++|+||+|+.... ++.+.+.+..+..
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~-~L~~kP~IlVlNKiDl~~~~---el~~~l~~l~~~~------ 304 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP-KLAEKPRWLVFNKIDLLDEE---EAEERAKAIVEAL------ 304 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh-hhcCCCEEEEEeCCccCChH---HHHHHHHHHHHHh------
Confidence 8899999999999821 1345666666665554321 01468999999999996432 2222222111100
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
....+++++||++++ +++|+++|.+.++
T Consensus 305 ------------------------~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 305 ------------------------GWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred ------------------------CCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 111258999999998 9999999988764
No 197
>PRK11058 GTPase HflX; Provisional
Probab=99.82 E-value=3.4e-19 Score=156.40 Aligned_cols=154 Identities=21% Similarity=0.283 Sum_probs=97.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCCc--hhhHh----
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL--RPKLD---- 135 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~--~~~~~---- 135 (268)
.++|+++|.+|||||||+|+|++.++... ..+|..+.... +.+.+. ..+.+|||||..+. ...+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~------i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~ 269 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR------IDVADV-GETVLADTVGFIRHLPHDLVAAFKA 269 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE------EEeCCC-CeEEEEecCcccccCCHHHHHHHHH
Confidence 36899999999999999999998765211 12233333222 222332 26789999998432 22222
Q ss_pred --hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 136 --EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 --~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
..++.+|++++|+|++++ .+......+ ..++.... ..+.|+++|+||+|+...... .... ..
T Consensus 270 tl~~~~~ADlIL~VvDaS~~-~~~e~l~~v-~~iL~el~--~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~----- 333 (426)
T PRK11058 270 TLQETRQATLLLHVVDAADV-RVQENIEAV-NTVLEEID--AHEIPTLLVMNKIDMLDDFEP-----RIDR--DE----- 333 (426)
T ss_pred HHHHhhcCCEEEEEEeCCCc-cHHHHHHHH-HHHHHHhc--cCCCCEEEEEEcccCCCchhH-----HHHH--Hh-----
Confidence 346889999999999997 544444322 22222211 157899999999999643110 0100 00
Q ss_pred hccccccccCcccCCCCCCCeeeccCCcee-EEEEeeeccCC-chhHHHHHHhhcC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+. .++++||++|+ +++|+++|.+.+.
T Consensus 334 ---------------------------~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 334 ---------------------------ENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ---------------------------cCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 001 25789999998 9999999988763
No 198
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=5.8e-19 Score=160.54 Aligned_cols=172 Identities=19% Similarity=0.266 Sum_probs=111.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc--CCcccccc-----e---eeccccceEEeecccccCCceeeEEEEeCCCCCCchh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD--GSTHQGTV-----T---SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 132 (268)
..++|+++|+.++|||||+++|+. +.+..... . ..+.+.+.........+..+.+.+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 567999999999999999999986 33322110 0 0111111111111122222337999999999999999
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
.+..+++.+|++|+|+|+.++. .......+..... .++|+++|+||+|+...... +..+.+...+..+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~--~~qt~~~l~~a~~------~gip~IVviNKiD~~~a~~~-~vl~ei~~l~~~l--- 151 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGP--MPQTRFVTKKAFA------YGLKPIVVINKVDRPGARPD-WVVDQVFDLFVNL--- 151 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCc--cHHHHHHHHHHHH------cCCCEEEEEECcCCCCCchh-HHHHHHHHHHhcc---
Confidence 9999999999999999999862 2334444444443 57899999999998765433 2222222222111
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-----------chhHHHHHHhhcCC
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVKP 268 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~p 268 (268)
.. ......++++.+||++|. +..|++.|.+++||
T Consensus 152 ----~~------------------~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 152 ----DA------------------TDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred ----Cc------------------cccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 00 000123689999999985 67888899988875
No 199
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=3.2e-19 Score=143.22 Aligned_cols=117 Identities=20% Similarity=0.141 Sum_probs=73.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccc--c--------------------ce-----eeccccceEEeecccccCCceee
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQG--T--------------------VT-----SMEPNEDTFVLHSESTKKGKIKP 118 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~--~--------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~ 118 (268)
+|+++|++|+|||||+++|+...-... . .. ....+.+.........+.+ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 589999999999999999975321100 0 00 0001111111112223333 57
Q ss_pred EEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 119 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 119 ~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+|||||+.++.......++.+|++|+|+|++++. ...... ...+.... ...++++|+||+|+..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~--~~~~~~-~~~~~~~~----~~~~iIvviNK~D~~~ 144 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGV--LEQTRR-HSYILSLL----GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc--cHhHHH-HHHHHHHc----CCCcEEEEEEchhccc
Confidence 899999999988777778889999999999999862 122222 22222221 2245788999999964
No 200
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=2.4e-19 Score=158.82 Aligned_cols=123 Identities=20% Similarity=0.168 Sum_probs=78.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccc-------------c-------ce-----eeccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQG-------------T-------VT-----SMEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~-------------~-------~~-----~~~~~~~~~~~~~~~~~~~ 114 (268)
++..+|+++|++|+|||||+++|+...- ... . .. ...++.+.......+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4668899999999999999999984321 100 0 00 0012222222222233333
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+.+||||||++|.......++.+|++++|+|+++. ........+...+.... ...|+++|+||+|+..
T Consensus 84 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~-~~~~~~~~~~~~~~~~~----~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 84 --YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA-GGVMPQTREHVFLARTL----GINQLIVAINKMDAVN 153 (425)
T ss_pred --eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC-CCCCcchHHHHHHHHHc----CCCeEEEEEEcccccc
Confidence 6899999999999877777778899999999999972 11222222222222221 2346999999999975
No 201
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=8.1e-19 Score=153.19 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=101.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------hhhHh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-------RPKLD 135 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~~~ 135 (268)
..|+++|.||||||||++++++.+... ...+|..|+.+...+. ++ ..+.+||+||...- ...+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-----~~--~~~~laD~PGliega~~~~gLg~~fL 231 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-----DG--RSFVMADIPGLIEGASEGVGLGHQFL 231 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-----CC--ceEEEEECCCCcccccccchHHHHHH
Confidence 489999999999999999999866321 1233444443332221 12 47999999997531 12233
Q ss_pred hhccCCCEEEEEEeCCCC--CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 136 EFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
.+++.++++|+|+|+++. .++++....+...+..... ...++|++||+||+|+... .+.+ +.+. +.+
T Consensus 232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~-~L~~kP~IVV~NK~DL~~~--~e~l-~~l~---~~l---- 300 (424)
T PRK12297 232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP-RLLERPQIVVANKMDLPEA--EENL-EEFK---EKL---- 300 (424)
T ss_pred HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch-hccCCcEEEEEeCCCCcCC--HHHH-HHHH---HHh----
Confidence 456679999999999753 1345555555555544321 1147899999999998422 1111 1111 110
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. .+++++||++|+ +++|+++|.+.+
T Consensus 301 --------------------------~--~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 301 --------------------------G--PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred --------------------------C--CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 368999999999 999999998765
No 202
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=2.6e-18 Score=138.50 Aligned_cols=180 Identities=22% Similarity=0.290 Sum_probs=110.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCccccc----------ceee---ccccceEEee-cc--cc---cCCceeeEEEEeCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGT----------VTSM---EPNEDTFVLH-SE--ST---KKGKIKPVHLVDVP 125 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~----------~~~~---~~~~~~~~~~-~~--~~---~~~~~~~~~i~Dtp 125 (268)
++|+++|+.|+|||||+++|+........ .... +...+ ..+. .. .. .++..+.+.+||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g-iti~~~~~~~~~~~~~~~~~~i~iiDtp 79 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERG-ISIKSSPISLVLPDSKGKSYLFNIIDTP 79 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcC-ccccccceeEEEEcCCCCEEEEEEEECC
Confidence 47999999999999999999875432210 0000 00000 0000 00 00 13445789999999
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC---CCHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRKQM 202 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~---~~~~~~~~~l 202 (268)
|+.++......++..+|++++|+|+.+. .+. ....++..... .+.|+++|+||+|+... ....+..+.+
T Consensus 80 G~~~f~~~~~~~~~~aD~~llVvD~~~~-~~~-~~~~~~~~~~~------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l 151 (213)
T cd04167 80 GHVNFMDEVAAALRLSDGVVLVVDVVEG-VTS-NTERLIRHAIL------EGLPIVLVINKIDRLILELKLPPNDAYFKL 151 (213)
T ss_pred CCcchHHHHHHHHHhCCEEEEEEECCCC-CCH-HHHHHHHHHHH------cCCCEEEEEECcccCcccccCCHHHHHHHH
Confidence 9999988899999999999999999886 333 22333333332 46899999999998632 1233444455
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-ch--------hHHHHHHhhcC
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS--------QVEQFIREQVK 267 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~--------~l~~~l~~~~~ 267 (268)
.+.++.++.......... ...|... +..++++||+.|. +. +|.+.|.+++|
T Consensus 152 ~~~i~~~n~~~~~~~~~~------------~~~~~p~--~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 152 RHIIDEVNNIIASFSTTL------------SFLFSPE--NGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHHHHHHhcCCC------------ceEeccC--CCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 544444433332222111 0112222 2357788999885 55 78888877765
No 203
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.81 E-value=5.2e-19 Score=143.12 Aligned_cols=119 Identities=23% Similarity=0.153 Sum_probs=74.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCc--cccc--------------------ce-----eeccccceEEeecccccCCceee
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGST--HQGT--------------------VT-----SMEPNEDTFVLHSESTKKGKIKP 118 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~--~~~~--------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~ 118 (268)
+|+++|+.++|||||+.+|+...- .... .. ....+++.......+.+.+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 589999999999999999863211 0000 00 0011111122222233344 68
Q ss_pred EEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCC-----CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 119 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP-----NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 119 ~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+|||||+.++.......++.+|++|+|+|++++.. ........+... ... ...|+++|+||+|+..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL----GVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc----CCCeEEEEEEcccccc
Confidence 9999999998888777788889999999999998410 011122222222 211 3468999999999974
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=3.7e-19 Score=157.64 Aligned_cols=173 Identities=18% Similarity=0.172 Sum_probs=103.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--Ccccccc--------------------ee-----eccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTV--------------------TS-----MEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~--------------------~~-----~~~~~~~~~~~~~~~~~~ 114 (268)
+...+|+++|+.++|||||+++|+.. ....... .. ...+.+.......+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 46789999999999999999999852 2211000 00 011111111122233333
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHH--HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
+.+.+||||||++|......++..+|++++|+|++++ .+.. ....++ .+.... ...|+++|+||+|+...
T Consensus 85 --~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~-~~~~~~~t~~~~-~~~~~~----~~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 85 --YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDG-EFEVQPQTREHA-FLARTL----GINQLIVAINKMDSVNY 156 (426)
T ss_pred --eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCC-CcccCCchHHHH-HHHHHc----CCCeEEEEEEChhccCc
Confidence 6899999999999887777788999999999999986 3221 111111 222211 23579999999999742
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chh------------HH
Q 024385 193 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ------------VE 259 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~------------l~ 259 (268)
. .+. .+...++++.+..... + -...++++++||++|+ +++ |.
T Consensus 157 ~-~~~-~~~~~~ei~~~~~~~g---------------------~--~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~ 211 (426)
T TIGR00483 157 D-EEE-FEAIKKEVSNLIKKVG---------------------Y--NPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLL 211 (426)
T ss_pred c-HHH-HHHHHHHHHHHHHHcC---------------------C--CcccceEEEeeccccccccccccCCccccchHHH
Confidence 2 111 1222223332211100 0 0234689999999998 764 77
Q ss_pred HHHHhhcC
Q 024385 260 QFIREQVK 267 (268)
Q Consensus 260 ~~l~~~~~ 267 (268)
+.|....+
T Consensus 212 ~~l~~~~~ 219 (426)
T TIGR00483 212 EALDALEP 219 (426)
T ss_pred HHHhcCCC
Confidence 77765443
No 205
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=4e-19 Score=166.15 Aligned_cols=160 Identities=15% Similarity=0.158 Sum_probs=103.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc---------hhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL---------RPK 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~---------~~~ 133 (268)
..++|+++|.+|||||||+|+|++.+.. ..+..++++...+...+.+++ ..+.+|||||+.+- ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~---~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~ 523 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERA---VVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSS 523 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc---ccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHH
Confidence 3579999999999999999999988641 122223333333333344455 36789999996421 111
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
...+++.+|++++|+|++++ .+.... .++..+.. .++|+++|+||+|+......+ .+++.++..
T Consensus 524 ~r~~~~i~~advvilViDat~~-~s~~~~-~i~~~~~~------~~~piIiV~NK~DL~~~~~~~----~~~~~~~~~-- 589 (712)
T PRK09518 524 LRTQAAIERSELALFLFDASQP-ISEQDL-KVMSMAVD------AGRALVLVFNKWDLMDEFRRQ----RLERLWKTE-- 589 (712)
T ss_pred HHHHHHhhcCCEEEEEEECCCC-CCHHHH-HHHHHHHH------cCCCEEEEEEchhcCChhHHH----HHHHHHHHh--
Confidence 12457889999999999987 444443 33333332 578999999999997533222 222222211
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.. ....+++++||++|. ++++++.+.+..
T Consensus 590 ------------------------l~~-~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 590 ------------------------FDR-VTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred ------------------------ccC-CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 111 122467889999998 999998887653
No 206
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=7.1e-19 Score=143.53 Aligned_cols=189 Identities=20% Similarity=0.234 Sum_probs=112.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCccc--------c-cceeecc-----ccceEEeecccccCCceeeEEEEeCCCCCCch
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQ--------G-TVTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~--------~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
+|+++|++|+|||||+++|+...-.. . +.....+ ..+.......+.+.+ +++++|||||+.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 58999999999999999997532100 0 0000000 000001111122333 689999999999999
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
..+..+++.+|++++|+|++++. . .....++..+.. .++|+++++||+|+.... .+...+.+...+..
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~-~-~~~~~~~~~~~~------~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~--- 146 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGV-Q-AQTRILWRLLRK------LNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSS--- 146 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCC-C-HHHHHHHHHHHH------cCCCEEEEEECccccCCC-HHHHHHHHHHHHCC---
Confidence 99999999999999999999872 2 233333333322 578999999999998643 34444444433321
Q ss_pred hhhccc----------cc-----------cccCc-ccCCCCCCCeeeccC----------CceeEEEEeeeccCC-chhH
Q 024385 212 SRSAVS----------EA-----------DVTND-FTLGIPGQAFSFSQC----------HNKVSVAEASGLTGE-ISQV 258 (268)
Q Consensus 212 ~~~~~~----------~~-----------~~~~~-~~~~~~~~~f~f~~~----------~~~~~~~~~Sa~~g~-i~~l 258 (268)
..-.+. .. +.++. +.....+.+++-+++ ..-+|++.+||.++. ++.|
T Consensus 147 ~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~l 226 (237)
T cd04168 147 DIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEEL 226 (237)
T ss_pred CeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHH
Confidence 110000 00 00000 000111122221111 235788889999998 9999
Q ss_pred HHHHHhhcCC
Q 024385 259 EQFIREQVKP 268 (268)
Q Consensus 259 ~~~l~~~~~p 268 (268)
++.|.+++|.
T Consensus 227 l~~~~~~~p~ 236 (237)
T cd04168 227 LEGITKLFPT 236 (237)
T ss_pred HHHHHHhcCC
Confidence 9999999873
No 207
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=5.4e-19 Score=155.30 Aligned_cols=171 Identities=19% Similarity=0.159 Sum_probs=104.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccc---cc--ceeeccccceEE------------eecccccCC------ceee
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---GT--VTSMEPNEDTFV------------LHSESTKKG------KIKP 118 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~---~~--~~~~~~~~~~~~------------~~~~~~~~~------~~~~ 118 (268)
....+|+++|++++|||||+++|.+..... .. -.|+......+. +......++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 356789999999999999999997532110 00 001111100000 001000011 1257
Q ss_pred EEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH
Q 024385 119 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 198 (268)
Q Consensus 119 ~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 198 (268)
+++||||||++|...+......+|++++|+|++++. ...+..+.+..+... ...|+++|+||+|+.......+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~~qt~e~l~~l~~~-----gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-PQPQTKEHLMALEII-----GIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-cccchHHHHHHHHHc-----CCCeEEEEEEccccCCHHHHHHH
Confidence 999999999999888888889999999999999752 112233333322221 23579999999999753222111
Q ss_pred HHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 199 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 199 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+.+.+.+... ...+++++++||++|+ +++|+++|.+.++
T Consensus 156 ~~~i~~~l~~~-----------------------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 156 YEEIKEFVKGT-----------------------------VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHhhhhhc-----------------------------ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 12222111100 0224689999999999 9999999998765
No 208
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.80 E-value=1.3e-18 Score=132.98 Aligned_cols=155 Identities=25% Similarity=0.236 Sum_probs=99.1
Q ss_pred EEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-------hHhhhccCC
Q 024385 69 LAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP-------KLDEFLPQA 141 (268)
Q Consensus 69 ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-------~~~~~~~~~ 141 (268)
++|++|+|||||++++.+..... .+..+..+...........+ ...+.+|||||+..... ....+++.+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~ 76 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI---VSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERA 76 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc---cCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhC
Confidence 58999999999999999875431 11111111111111111111 25899999999876543 344578899
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+.+. ....... +...... .+.|+++|+||+|+..........+....
T Consensus 77 d~il~v~~~~~~-~~~~~~~-~~~~~~~------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~----------------- 131 (163)
T cd00880 77 DLILFVVDADLR-ADEEEEK-LLELLRE------RGKPVLLVLNKIDLLPEEEEEELLELRLL----------------- 131 (163)
T ss_pred CEEEEEEeCCCC-CCHHHHH-HHHHHHh------cCCeEEEEEEccccCChhhHHHHHHHHHh-----------------
Confidence 999999999997 4333332 2333322 68999999999999865433322210000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
........+++++||+++. +++++++|.+.+
T Consensus 132 --------------~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 132 --------------ILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred --------------hcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 0011345689999999998 999999998753
No 209
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=1.1e-18 Score=159.68 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=102.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccc-ccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES-TKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.|+++|+.++|||||+++|++..... .......+.+........ ..++ ..+.+||||||++|.......+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr-~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADR-LPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcc-chhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 58899999999999999998643110 000111111111100011 1123 3689999999999988888889999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|+|+.++. .....+.+ .++.. .++| ++||+||+|+.+....+.+.+.+.+.+... .
T Consensus 79 lLVVda~eg~--~~qT~ehl-~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~----~--------- 137 (614)
T PRK10512 79 LLVVACDDGV--MAQTREHL-AILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREY----G--------- 137 (614)
T ss_pred EEEEECCCCC--cHHHHHHH-HHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhc----C---------
Confidence 9999999862 23333333 33332 3455 579999999975333333333333222210 0
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
...++++++||++|+ +++|+++|.+...|
T Consensus 138 ----------------~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 138 ----------------FAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred ----------------CCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 123579999999999 99999999887654
No 210
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=1.1e-18 Score=162.73 Aligned_cols=153 Identities=23% Similarity=0.248 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh---------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------- 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------- 133 (268)
+..+|+++|++|||||||+|++++.+...+.. ++++..........++ ..+.+|||||+.++...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~----pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~ 75 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNW----AGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQ 75 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCC----CCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHH
Confidence 35689999999999999999999876522221 2222222222223333 68999999999876431
Q ss_pred -Hhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 134 -LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 134 -~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
...++ ..+|++++|+|+++. + +...+..++.+ .++|+++|+||+|+.+........+.+.+
T Consensus 76 i~~~~l~~~~aD~vI~VvDat~l-e---r~l~l~~ql~e------~giPvIvVlNK~Dl~~~~~i~id~~~L~~------ 139 (772)
T PRK09554 76 IACHYILSGDADLLINVVDASNL-E---RNLYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIDIDALSA------ 139 (772)
T ss_pred HHHHHHhccCCCEEEEEecCCcc-h---hhHHHHHHHHH------cCCCEEEEEEchhhhhccCcHHHHHHHHH------
Confidence 22343 479999999999986 2 22334444443 57999999999998754443322223322
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++.+.+.+..
T Consensus 140 -----------------------------~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 140 -----------------------------RLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred -----------------------------HhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 123579999999998 999999987753
No 211
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=3.7e-18 Score=128.88 Aligned_cols=160 Identities=26% Similarity=0.314 Sum_probs=113.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeecc-----ccceEEeecccccCCceeeEEEEeCCCCCCchhhH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKL 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 134 (268)
....||++.|+.++||||++.++........ ..++.+. ++....+.. ...++. ..+.++|||||+++.-.|
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~-~~~~~~-~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-IELDED-TGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc-eEEcCc-ceEEEecCCCcHHHHHHH
Confidence 4678999999999999999999987653111 0001111 111111111 222222 578999999999999999
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.-+.+++.++|+++|++.+ ..+ ....+.+++... ..+|++|++||.|+.+..+++.+++.+...+
T Consensus 86 ~~l~~ga~gaivlVDss~~-~~~--~a~~ii~f~~~~----~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~-------- 150 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRP-ITF--HAEEIIDFLTSR----NPIPVVVAINKQDLFDALPPEKIREALKLEL-------- 150 (187)
T ss_pred HHHhCCcceEEEEEecCCC-cch--HHHHHHHHHhhc----cCCCEEEEeeccccCCCCCHHHHHHHHHhcc--------
Confidence 9999999999999999998 444 444455555542 3399999999999999999999988887522
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
..+++++.+|.+++ ..+..+.+..
T Consensus 151 --------------------------~~~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 151 --------------------------LSVPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred --------------------------CCCceeeeecccchhHHHHHHHHHh
Confidence 24689999999887 4444444443
No 212
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.80 E-value=2.1e-19 Score=131.41 Aligned_cols=116 Identities=27% Similarity=0.368 Sum_probs=79.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
||+|+|++|||||||+++|.++.+........ ......... .....+....+.+||++|++.+...+...+..+|+++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEE-TSEITIGVD-VIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVI 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------S-STTSCEEEE-EEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccc-cCCCcEEEE-EEEecCCceEEEEEecCccceecccccchhhcCcEEE
Confidence 69999999999999999999988641111111 111112111 1223344346899999999988887777799999999
Q ss_pred EEEeCCCCCCCHHHHHHH---HHHHHhcCCccCCCCcEEEEeecCC
Q 024385 146 FVVDALEFLPNCSAASEY---LYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
+|||+++. +++..+..+ +..+... ..++|+++|+||.|
T Consensus 79 lv~D~s~~-~s~~~~~~~~~~l~~~~~~----~~~~piilv~nK~D 119 (119)
T PF08477_consen 79 LVYDLSDP-ESLEYLSQLLKWLKNIRKR----DKNIPIILVGNKSD 119 (119)
T ss_dssp EEEECCGH-HHHHHHHHHHHHHHHHHHH----SSCSEEEEEEE-TC
T ss_pred EEEcCCCh-HHHHHHHHHHHHHHHHHcc----CCCCCEEEEEeccC
Confidence 99999997 778776444 4444432 25699999999998
No 213
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=1.8e-18 Score=151.50 Aligned_cols=171 Identities=20% Similarity=0.207 Sum_probs=105.9
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCccc-------ccce-----eeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-------GTVT-----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
.++..+|+++|+.++|||||+++|++..... .... ......+..... ..+......+.++|||||.
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~--~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAH--VEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEe--eEecCCCcEEEEEECCCHH
Confidence 3567889999999999999999998531100 0000 001111111111 1122223578999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
+|.......+..+|++++|+|+.++. .....+.+..+.. .++| +++++||+|+.... +..+.+.+++.
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~--~~~t~~~~~~~~~------~g~~~~IvviNK~D~~~~~---~~~~~i~~~i~ 155 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ------VGVPYLVVFLNKVDLVDDE---ELLELVEMEVR 155 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCEEEEEEEecCCcchH---HHHHHHHHHHH
Confidence 98888777788999999999998862 2233344433332 5677 67899999997422 22222333333
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC---------CchhHHHHHHhhcC
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG---------EISQVEQFIREQVK 267 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g---------~i~~l~~~l~~~~~ 267 (268)
.+-.... |. ..+++++++||++| .++.|.+.|.+++|
T Consensus 156 ~~l~~~~---------------------~~--~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 156 ELLSEYD---------------------FP--GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHhC---------------------CC--cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2211100 11 22468999999998 26888999988876
No 214
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.79 E-value=8.4e-19 Score=160.03 Aligned_cols=144 Identities=23% Similarity=0.330 Sum_probs=96.3
Q ss_pred cCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------Hhhhc--cCCC
Q 024385 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------LDEFL--PQAA 142 (268)
Q Consensus 71 G~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------~~~~~--~~~d 142 (268)
|.+|||||||+|++++.++.... .++.+..........++ ..+++|||||+.++... ...++ +.+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n----~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGN----WPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecC----CCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCC
Confidence 89999999999999987653222 22233222223333444 46899999999877543 33443 3789
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. ++...+..++.+ .++|+++|+||+|+.+........+.+.+
T Consensus 75 vvI~VvDat~l----er~l~l~~ql~~------~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~------------------ 126 (591)
T TIGR00437 75 LVVNVVDASNL----ERNLYLTLQLLE------LGIPMILALNLVDEAEKKGIRIDEEKLEE------------------ 126 (591)
T ss_pred EEEEEecCCcc----hhhHHHHHHHHh------cCCCEEEEEehhHHHHhCCChhhHHHHHH------------------
Confidence 99999999885 222333333333 57899999999998654332222222222
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++++++||++|+ ++++++++.+.
T Consensus 127 -----------------~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 127 -----------------RLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred -----------------HcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 123579999999999 99999999765
No 215
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.79 E-value=1.9e-18 Score=127.60 Aligned_cols=136 Identities=24% Similarity=0.287 Sum_probs=92.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC----CCchhhHhhhccC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH----SRLRPKLDEFLPQ 140 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~----~~~~~~~~~~~~~ 140 (268)
.||+++|+.|||||||+++|.+.......... ..+ .+ .++||||- ..++..+......
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~-------i~~------~~-----~~IDTPGEyiE~~~~y~aLi~ta~d 63 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQA-------IEY------YD-----NTIDTPGEYIENPRFYHALIVTAQD 63 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccce-------eEe------cc-----cEEECChhheeCHHHHHHHHHHHhh
Confidence 58999999999999999999987642211111 111 11 46999993 2344445556678
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC-CCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT-AHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
||.+++|.|++++...+..-..-. .+.|+|=|+||+|+.. ..+.+..++.|.. .
T Consensus 64 ad~V~ll~dat~~~~~~pP~fa~~-----------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~----a---------- 118 (143)
T PF10662_consen 64 ADVVLLLQDATEPRSVFPPGFASM-----------FNKPVIGVITKIDLPSDDANIERAKKWLKN----A---------- 118 (143)
T ss_pred CCEEEEEecCCCCCccCCchhhcc-----------cCCCEEEEEECccCccchhhHHHHHHHHHH----c----------
Confidence 999999999999733333322211 5789999999999983 3334444433332 0
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+--++|++||.+|+ |++|.++|.+
T Consensus 119 ---------------------G~~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 119 ---------------------GVKEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred ---------------------CCCCeEEEECCCCcCHHHHHHHHhC
Confidence 11146999999999 9999999874
No 216
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=3.6e-18 Score=147.90 Aligned_cols=161 Identities=19% Similarity=0.277 Sum_probs=117.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc------c-----------cccceeeccccceEEeecccccCCceeeEEEEeC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST------H-----------QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDV 124 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 124 (268)
.+.+++.|+.+.+.|||||..+|+...- . ...--|+..+++...+. +|+.+.++++||
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~-----~~~~ylLNLIDT 132 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYK-----DGQSYLLNLIDT 132 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEE-----cCCceEEEeecC
Confidence 4678999999999999999999854211 0 00111333334333333 367789999999
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
|||.+|+....+.+..|+++|+|+|++++. .-+....+...+ + .+..+|.|+||+|+..+ .++.+..++.+
T Consensus 133 PGHvDFs~EVsRslaac~G~lLvVDA~qGv-qAQT~anf~lAf-e------~~L~iIpVlNKIDlp~a-dpe~V~~q~~~ 203 (650)
T KOG0462|consen 133 PGHVDFSGEVSRSLAACDGALLVVDASQGV-QAQTVANFYLAF-E------AGLAIIPVLNKIDLPSA-DPERVENQLFE 203 (650)
T ss_pred CCcccccceehehhhhcCceEEEEEcCcCc-hHHHHHHHHHHH-H------cCCeEEEeeeccCCCCC-CHHHHHHHHHH
Confidence 999999999999999999999999999983 233444444333 3 68899999999999865 45555555543
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.+. . ..-+++-+|||+|- +++++++|.+++||
T Consensus 204 lF~------------------------------~--~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 204 LFD------------------------------I--PPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred Hhc------------------------------C--CccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 222 2 22378899999998 99999999999998
No 217
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=5.6e-18 Score=130.73 Aligned_cols=164 Identities=23% Similarity=0.344 Sum_probs=104.0
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC----------C
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS----------R 129 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~----------~ 129 (268)
......-|+++|.+|||||||+|.|++.+-- ..++-+|+.+... ....+++ .+.++|.||.. .
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L--ArtSktPGrTq~i--Nff~~~~---~~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNL--ARTSKTPGRTQLI--NFFEVDD---ELRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcce--eecCCCCCcccee--EEEEecC---cEEEEeCCCcccccCCHHHHHH
Confidence 3456789999999999999999999996621 2223334333221 1223333 37899999954 3
Q ss_pred chhhHhhhccC---CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 206 (268)
Q Consensus 130 ~~~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l 206 (268)
+......|++. ..++++++|+..+ ....+..+.+++.+ .++|+++++||+|.............+.+.+
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~---~~~~D~em~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l 164 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHP---PKDLDREMIEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEEL 164 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCC---CcHHHHHHHHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHh
Confidence 34445567753 5688999999987 45555566666664 7999999999999987544433333332222
Q ss_pred HHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 207 DKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.. ...... .++..|+.++. ++++.+.|.+++.
T Consensus 165 ~~----------------------------~~~~~~-~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 165 KK----------------------------PPPDDQ-WVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred cC----------------------------CCCccc-eEEEEecccccCHHHHHHHHHHHhh
Confidence 10 000111 14445555555 9999999988764
No 218
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.78 E-value=3.3e-18 Score=150.26 Aligned_cols=172 Identities=20% Similarity=0.192 Sum_probs=102.7
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCccccc-----ceeeccccceEE------------eecccccC--C----cee
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-----VTSMEPNEDTFV------------LHSESTKK--G----KIK 117 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~--~----~~~ 117 (268)
.++..+|+++|+.++|||||+.+|.+....... -.|+........ +......+ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 356789999999999999999999653111000 011211111101 00000001 1 125
Q ss_pred eEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH
Q 024385 118 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF 197 (268)
Q Consensus 118 ~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~ 197 (268)
.+++|||||+++|..........+|++++|+|++++. ........+..+... ...|+++|+||+|+.......+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~-~~~~t~~~l~~l~~~-----~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC-PQPQTKEHLMALDII-----GIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-CChhHHHHHHHHHHc-----CCCcEEEEEEeeccccchhHHH
Confidence 7899999999988776666677789999999999751 112222222222211 2347999999999975432211
Q ss_pred HHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 198 IRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 198 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+.+...++. ....+++++++||++|+ +++|+++|.+.++
T Consensus 160 ~~~~i~~~l~~-----------------------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 160 NYEQIKEFVKG-----------------------------TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHhcc-----------------------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 11222211110 00234689999999998 9999999998765
No 219
>PRK12735 elongation factor Tu; Reviewed
Probab=99.78 E-value=3.6e-18 Score=149.68 Aligned_cols=170 Identities=19% Similarity=0.189 Sum_probs=104.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC-------cccccce-----eeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS-------THQGTVT-----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
++..+|+++|++++|||||+++|++.. +...... ....+.+..........++ ..+.++|||||.+
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~--~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN--RHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC--cEEEEEECCCHHH
Confidence 456789999999999999999998621 0000000 0011111111111112222 5789999999998
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
|.......+..+|++++|+|+.++. .....+.+..+.. .++|.+ +++||+|+... ++..+.+..++..
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~--~~qt~e~l~~~~~------~gi~~iivvvNK~Dl~~~---~~~~~~~~~ei~~ 156 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVDD---EELLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEEEecCCcch---HHHHHHHHHHHHH
Confidence 8887878888999999999999852 2333344433332 567855 67999999742 2233333333333
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC-----------CchhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG-----------EISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g-----------~i~~l~~~l~~~~~ 267 (268)
+..... | ...+++++++||++| .+..|++.|...++
T Consensus 157 ~l~~~~---------------------~--~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 157 LLSKYD---------------------F--PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHcC---------------------C--CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 211100 0 023578999999998 27788888888765
No 220
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.7e-18 Score=147.36 Aligned_cols=164 Identities=18% Similarity=0.279 Sum_probs=119.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.+-|+++|+...|||||+..+...+........++-.++.+..+.... ..-.+.++|||||+.|..+..+-.+-+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~---~~~~itFiDTPGHeAFt~mRaRGa~vt 79 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI---KIPGITFIDTPGHEAFTAMRARGASVT 79 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC---CCceEEEEcCCcHHHHHHHHhcCCccc
Confidence 46788999999999999999999988775444444555556555553211 113789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|.+|+|+|+.++. ..+..+-+.-... .+.|++|+.||+|... .++..+...+.+.
T Consensus 80 DIaILVVa~dDGv--~pQTiEAI~hak~------a~vP~iVAiNKiDk~~-~np~~v~~el~~~---------------- 134 (509)
T COG0532 80 DIAILVVAADDGV--MPQTIEAINHAKA------AGVPIVVAINKIDKPE-ANPDKVKQELQEY---------------- 134 (509)
T ss_pred cEEEEEEEccCCc--chhHHHHHHHHHH------CCCCEEEEEecccCCC-CCHHHHHHHHHHc----------------
Confidence 9999999999972 2333333333332 7999999999999984 4455454444321
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
++.-..+...+.|+++||++|+ +++|++.|.-
T Consensus 135 -----------gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 135 -----------GLVPEEWGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred -----------CCCHhhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 1112233566899999999999 9999987753
No 221
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.78 E-value=1.1e-17 Score=129.37 Aligned_cols=156 Identities=22% Similarity=0.318 Sum_probs=95.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc----------hhhHh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL----------RPKLD 135 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~----------~~~~~ 135 (268)
.|+++|++|+|||||++.+.++.+......+. ..+... .....++ .+.+|||||+... .....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~--~~t~~~--~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 73 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTP--GKTQLI--NFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIE 73 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCC--CcceeE--EEEEccC---eEEEecCCCccccccCHHHHHHHHHHHH
Confidence 48999999999999999999655422111111 111111 1111122 7899999997542 33344
Q ss_pred hhcc---CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 136 EFLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 136 ~~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
.|+. ..+++++++|...... .....+...+.. .+.|+++++||+|+............+...++.
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~---~~~~~~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~---- 141 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPT---EIDLEMLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKL---- 141 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCC---HhHHHHHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh----
Confidence 4554 3578899999987521 111222222322 468999999999996544333333333332221
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+++++||+++. ++++.++|.+++
T Consensus 142 --------------------------~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 142 --------------------------FEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred --------------------------ccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 0233478899999998 999999998864
No 222
>CHL00071 tufA elongation factor Tu
Probab=99.77 E-value=5.3e-18 Score=149.20 Aligned_cols=170 Identities=20% Similarity=0.230 Sum_probs=104.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc------------cceeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG------------TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
+...+|+++|++++|||||+++|++..-... .......+.+.......+..++ ..+.++|||||.+
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~~ 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHAD 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChHH
Confidence 4568899999999999999999986421000 0000011111111111122222 5789999999998
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
|.......+..+|++++|+|+..+. .....+.+..+.. .++| +++++||+|+... ++..+.+.+++..
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~------~g~~~iIvvvNK~D~~~~---~~~~~~~~~~l~~ 156 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ------VGVPNIVVFLNKEDQVDD---EELLELVELEVRE 156 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEEEccCCCCH---HHHHHHHHHHHHH
Confidence 8888888889999999999999862 2333333333322 5678 7789999999753 2233333333333
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-------------------chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-------------------ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-------------------i~~l~~~l~~~~~ 267 (268)
+-.... |. ...++++++||++|. +..|++.|.+.++
T Consensus 157 ~l~~~~---------------------~~--~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 157 LLSKYD---------------------FP--GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred HHHHhC---------------------CC--CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 211100 11 224789999999885 3566777776653
No 223
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=1.6e-19 Score=134.89 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=102.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.-+|++++|..++||||++.+++.+-|...+-.++ +.......+.+++..+++.+|||+|++++......|++++.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktI----gvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI----GVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccccccccccc----chhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 46799999999999999999999988855444443 33333344455566678899999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
+.++||+.++. .+|+...+|...+.... ..+|.++|-||+|+....
T Consensus 95 a~vLVFSTTDr-~SFea~~~w~~kv~~e~----~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 95 ASVLVFSTTDR-YSFEATLEWYNKVQKET----ERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred ceEEEEecccH-HHHHHHHHHHHHHHHHh----ccCCeEEeeccchhhHhh
Confidence 99999999998 89999999999988764 799999999999998654
No 224
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.7e-18 Score=126.79 Aligned_cols=174 Identities=22% Similarity=0.341 Sum_probs=128.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.-|++++|..|+|||||++.|..+...+ .++|..|+.... .+.| .+++-+|.+||..-+..|..|+..+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPTSE~l------~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v 88 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEEL------SIGG--MTFTTFDLGGHLQARRVWKDYFPQV 88 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCChHHh------eecC--ceEEEEccccHHHHHHHHHHHHhhh
Confidence 577899999999999999999999887644 566666665433 3344 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++.+|+.+. +.+.+.+..+..++..... .++|+++.+||+|...+...++.+..+.- . ..+.....
T Consensus 89 ~~iv~lvda~d~-er~~es~~eld~ll~~e~l--a~vp~lilgnKId~p~a~se~~l~~~l~l--~---~~t~~~~~--- 157 (193)
T KOG0077|consen 89 DAIVYLVDAYDQ-ERFAESKKELDALLSDESL--ATVPFLILGNKIDIPYAASEDELRFHLGL--S---NFTTGKGK--- 157 (193)
T ss_pred ceeEeeeehhhH-HHhHHHHHHHHHHHhHHHH--hcCcceeecccccCCCcccHHHHHHHHHH--H---HHhccccc---
Confidence 999999999998 7788898888888775443 78999999999999987755555443321 1 11111000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+ ...-...+.++.||...++ -.+.+.|+.+++
T Consensus 158 ---v~~--------~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 158 ---VNL--------TDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred ---ccc--------cCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 000 0011345678889988887 777788887765
No 225
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=9.3e-18 Score=145.32 Aligned_cols=161 Identities=24% Similarity=0.341 Sum_probs=122.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.+.|-++|+.+.|||||+..|.+..........++-.++.|.+... .| -.+++.|||||..|..+..+....+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p---~G--~~iTFLDTPGHaAF~aMRaRGA~vt 225 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP---SG--KSITFLDTPGHAAFSAMRARGANVT 225 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC---CC--CEEEEecCCcHHHHHHHHhccCccc
Confidence 568899999999999999999999887654444455556676766542 45 4899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|.+++|+.+.++ -..+..+-+.-... .++|+++++||+|.... +++.+.+.+..
T Consensus 226 DIvVLVVAadDG--VmpQT~EaIkhAk~------A~VpiVvAinKiDkp~a-~pekv~~eL~~----------------- 279 (683)
T KOG1145|consen 226 DIVVLVVAADDG--VMPQTLEAIKHAKS------ANVPIVVAINKIDKPGA-NPEKVKRELLS----------------- 279 (683)
T ss_pred cEEEEEEEccCC--ccHhHHHHHHHHHh------cCCCEEEEEeccCCCCC-CHHHHHHHHHH-----------------
Confidence 999999999997 23444444433332 79999999999997654 45555444432
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
.+....++.++++++++||++|+ ++.|.+++.
T Consensus 280 ----------~gi~~E~~GGdVQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 280 ----------QGIVVEDLGGDVQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred ----------cCccHHHcCCceeEEEeecccCCChHHHHHHHH
Confidence 11224556789999999999998 999988775
No 226
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.76 E-value=9.1e-18 Score=151.02 Aligned_cols=132 Identities=21% Similarity=0.307 Sum_probs=84.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc--CCccc-ccc----------ee---eccccceEEee--cccccCCceeeEEEEe
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQ-GTV----------TS---MEPNEDTFVLH--SESTKKGKIKPVHLVD 123 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~-~~~----------~~---~~~~~~~~~~~--~~~~~~~~~~~~~i~D 123 (268)
.+.++|+++|++|+|||||+++|+. +.... +.+ .. .+...+..... ..+.+.+ +.+++||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inliD 85 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLLD 85 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEEE
Confidence 4678999999999999999999963 21100 000 00 00001111111 1122333 7899999
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
|||+.+|......+++.+|++|+|+|++++.. .....++ ..... .++|+++++||+|+.... ..++.+.++
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~-~~~~~-----~~iPiiv~iNK~D~~~a~-~~~~l~~i~ 156 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE--PQTRKLM-EVCRL-----RDTPIFTFINKLDRDGRE-PLELLDEIE 156 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCC--HHHHHHH-HHHHh-----cCCCEEEEEECCcccccC-HHHHHHHHH
Confidence 99999999888889999999999999998622 2233333 33322 689999999999987654 333334444
Q ss_pred H
Q 024385 204 K 204 (268)
Q Consensus 204 ~ 204 (268)
.
T Consensus 157 ~ 157 (526)
T PRK00741 157 E 157 (526)
T ss_pred H
Confidence 3
No 227
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.75 E-value=1.8e-17 Score=135.13 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=55.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCccccc--ceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hhHhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PKLDE 136 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~~~~ 136 (268)
+++++|++|+|||||+++|++....... .++..+..+ .+.+.+ ..+++|||||+.+.. .....
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g------~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~ 73 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPG------VLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIA 73 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEE------EEEECC--eEEEEEECCCcccccccchhHHHHHHH
Confidence 6899999999999999999987532111 112222222 222334 589999999985432 23446
Q ss_pred hccCCCEEEEEEeCCCC
Q 024385 137 FLPQAAGIVFVVDALEF 153 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~ 153 (268)
+++.+|++++|+|+++.
T Consensus 74 ~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 74 VARTADLILMVLDATKP 90 (233)
T ss_pred hhccCCEEEEEecCCcc
Confidence 78999999999999876
No 228
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.6e-17 Score=141.78 Aligned_cols=163 Identities=20% Similarity=0.287 Sum_probs=119.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--cc---------------ccceeeccccceEEeecccccCCceeeEEEEeC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQ---------------GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDV 124 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 124 (268)
.+.+++.++.+-+.|||||..|++...- .. ..--|+..+..+..+.. .+|+.+.++++||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~---~~g~~Y~lnlIDT 83 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKA---KDGETYVLNLIDT 83 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEe---CCCCEEEEEEcCC
Confidence 4567899999999999999999864321 00 01112333333333332 2567799999999
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
|||.+|.-...+.+..|.++++|+|++.+. ..+.+.+....+- .+..++-|+||+||..+ +++.+.++++.
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGv-eAQTlAN~YlAle-------~~LeIiPViNKIDLP~A-dpervk~eIe~ 154 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALE-------NNLEIIPVLNKIDLPAA-DPERVKQEIED 154 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccch-HHHHHHHHHHHHH-------cCcEEEEeeecccCCCC-CHHHHHHHHHH
Confidence 999999999999999999999999999983 2344444444432 68899999999999754 56667766665
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.+. -..-..+.||||+|. |+++++.|.+++||
T Consensus 155 ~iG--------------------------------id~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 155 IIG--------------------------------IDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred HhC--------------------------------CCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 433 112257889999998 99999999999987
No 229
>PLN03126 Elongation factor Tu; Provisional
Probab=99.75 E-value=3.3e-17 Score=145.68 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=97.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc------cccc------ceeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST------HQGT------VTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
++..+|+++|++++|||||+++|+.... ...+ ........+.......+...+ ..+.++|||||.+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHH
Confidence 4567899999999999999999985211 0000 000000111111111122233 5889999999999
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
|.......+..+|++++|+|+.++. .....+++..+.. .++| +++++||+|+.. .++..+.+.+++..
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~--~~qt~e~~~~~~~------~gi~~iIvvvNK~Dl~~---~~~~~~~i~~~i~~ 225 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGP--MPQTKEHILLAKQ------VGVPNMVVFLNKQDQVD---DEELLELVELEVRE 225 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCeEEEEEecccccC---HHHHHHHHHHHHHH
Confidence 9888888889999999999999872 2334444443333 5677 788999999975 23334444444444
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 254 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~ 254 (268)
+-.... |. ..+++++++||.+|.
T Consensus 226 ~l~~~g---------------------~~--~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 226 LLSSYE---------------------FP--GDDIPIISGSALLAL 248 (478)
T ss_pred HHHhcC---------------------CC--cCcceEEEEEccccc
Confidence 311100 11 235789999998873
No 230
>PLN03127 Elongation factor Tu; Provisional
Probab=99.75 E-value=5e-17 Score=143.79 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=104.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC------Cccccc-c-----eeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG------STHQGT-V-----TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~------~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
.++..+|+++|+.++|||||+++|.+. .....+ . .....+.+.......+..++ .++.++|||||.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK--RHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC--eEEEEEECCCcc
Confidence 356788999999999999999999632 100000 0 00111222222222222223 578999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
+|.......+..+|++++|+|+.++. ..+..+.+..+.. .++| +++++||+|+... ++..+.++.++.
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~------~gip~iIvviNKiDlv~~---~~~~~~i~~~i~ 204 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ------VGVPSLVVFLNKVDVVDD---EELLELVEMELR 204 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEEEeeccCCH---HHHHHHHHHHHH
Confidence 98888777788899999999998862 2233333333322 5788 5789999999742 223333443343
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC----------C-chhHHHHHHhhcC
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----------E-ISQVEQFIREQVK 267 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g----------~-i~~l~~~l~~~~~ 267 (268)
.+..... |. ..+++++++||+++ + +..|.++|.+.+|
T Consensus 205 ~~l~~~~---------------------~~--~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 205 ELLSFYK---------------------FP--GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHhC---------------------CC--CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3211100 10 23578899988743 1 6788899988775
No 231
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=2.7e-17 Score=144.18 Aligned_cols=120 Identities=20% Similarity=0.158 Sum_probs=77.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc-------ccccc-----eeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST-------HQGTV-----TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
++..+|+++|+.++|||||+++|++... ..... .....+.+..... ..+......+.+||||||++
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~--~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAH--VEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEE--EEEcCCCEEEEEEECCchHH
Confidence 5668899999999999999999974310 00000 0001111111111 12222335789999999999
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCCC
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVT 191 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~~ 191 (268)
|..........+|++++|+|+.++. .....+.+..+.. .++|.+ +++||+|+..
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~--~~qt~e~l~~~~~------~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEEEecccCC
Confidence 8877777788899999999999852 2233333433332 467755 6899999974
No 232
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.75 E-value=3.1e-17 Score=145.28 Aligned_cols=175 Identities=19% Similarity=0.184 Sum_probs=103.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--Cccccc--------------------cee-----eccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGT--------------------VTS-----MEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~--------------------~~~-----~~~~~~~~~~~~~~~~~~ 114 (268)
++..+|+++|+.++|||||+.+|+.. ...... ... .....+.......+..++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45678999999999999999998752 111000 000 000111111111122233
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHhcCCccCCCCc-EEEEeecCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP--NC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTD 188 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~---~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~D 188 (268)
+.++++|||||.+|.......+..+|++++|+|+.++.- .+ .+..+.+..+.. .++| +|+++||+|
T Consensus 85 --~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~------~gi~~iiv~vNKmD 156 (446)
T PTZ00141 85 --YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT------LGVKQMIVCINKMD 156 (446)
T ss_pred --eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH------cCCCeEEEEEEccc
Confidence 689999999999999999899999999999999998620 00 233333333322 4666 679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-ch-----------
Q 024385 189 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS----------- 256 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~----------- 256 (268)
.....-.+...+.+.+++...-... + |. ..+++++++||++|+ +.
T Consensus 157 ~~~~~~~~~~~~~i~~~i~~~l~~~--------------g-------~~--~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G 213 (446)
T PTZ00141 157 DKTVNYSQERYDEIKKEVSAYLKKV--------------G-------YN--PEKVPFIPISGWQGDNMIEKSDNMPWYKG 213 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhc--------------C-------CC--cccceEEEeecccCCCcccCCCCCcccch
Confidence 5432111122222222233221000 0 10 235799999999998 64
Q ss_pred -hHHHHHHhhcC
Q 024385 257 -QVEQFIREQVK 267 (268)
Q Consensus 257 -~l~~~l~~~~~ 267 (268)
.|.+.|....+
T Consensus 214 ~tL~~~l~~~~~ 225 (446)
T PTZ00141 214 PTLLEALDTLEP 225 (446)
T ss_pred HHHHHHHhCCCC
Confidence 37787776543
No 233
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.74 E-value=3.4e-17 Score=143.89 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=92.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCc--cccc----------------------ceeecc-----ccceEEeecccccCCc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGST--HQGT----------------------VTSMEP-----NEDTFVLHSESTKKGK 115 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~----------------------~~~~~~-----~~~~~~~~~~~~~~~~ 115 (268)
.+|+++|+.++|||||+++|+...- .... .....+ +.+.......+...+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 3799999999999999999864321 1000 000000 011111111122333
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 195 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 195 (268)
.++.++|||||++|.......+..+|++++|+|+..+.. ....+.+. +.... ...++++|+||+|+....
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~--~qt~~~~~-~~~~~----~~~~iivviNK~D~~~~~-- 149 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL--EQTRRHSY-IASLL----GIRHVVLAVNKMDLVDYD-- 149 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc--cccHHHHH-HHHHc----CCCcEEEEEEecccccch--
Confidence 588999999999988777788899999999999988622 12222222 22211 234689999999997532
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chh
Q 024385 196 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ 257 (268)
Q Consensus 196 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~ 257 (268)
++..+.+..++..+..... ..+++++++||++|+ +++
T Consensus 150 ~~~~~~i~~~~~~~~~~~~-------------------------~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 150 EEVFENIKKDYLAFAEQLG-------------------------FRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHHHcC-------------------------CCCccEEEeecccCCCCcc
Confidence 2222233333332211100 124679999999997 764
No 234
>PRK00049 elongation factor Tu; Reviewed
Probab=99.74 E-value=4.2e-17 Score=142.85 Aligned_cols=170 Identities=19% Similarity=0.195 Sum_probs=104.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccc---c----cc-----eeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---G----TV-----TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~---~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
+...+|+++|+.++|||||+++|++..... . .. .....+.+..........++ ..+.++|||||.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK--RHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC--eEEEEEECCCHHH
Confidence 566889999999999999999998631100 0 00 00011111111111122223 5789999999998
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
|.......+..+|++++|+|+.++. .....+.+..+.. .++|.+ +++||+|+.. .++..+.+..++..
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~--~~qt~~~~~~~~~------~g~p~iiVvvNK~D~~~---~~~~~~~~~~~i~~ 156 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVD---DEELLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC--chHHHHHHHHHHH------cCCCEEEEEEeecCCcc---hHHHHHHHHHHHHH
Confidence 8888888889999999999998862 2233333333332 567876 6899999964 22223333333333
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-----------chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~ 267 (268)
+-.... | ...+++++++||++|. +..|++.|.+.++
T Consensus 157 ~l~~~~---------------------~--~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 157 LLSKYD---------------------F--PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHhcC---------------------C--CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 211100 1 0235789999999862 5678888887664
No 235
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.74 E-value=3.6e-17 Score=132.63 Aligned_cols=184 Identities=23% Similarity=0.259 Sum_probs=110.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh---------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP--------- 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~--------- 132 (268)
.+...|+++|.||+|||||.|.+++.+. ...+-...+++......++-+. .++.++||||...-..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv---~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKV---SAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcc---ccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhHHHHHH
Confidence 4567899999999999999999999887 3445555555555444443333 6899999999543211
Q ss_pred ---hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH-HHHHHHH-HHHHH
Q 024385 133 ---KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQM-EKEID 207 (268)
Q Consensus 133 ---~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~l-~~~l~ 207 (268)
.....+..+|++++|+|+++.-..+ ....+..+... ..+|-++|.||+|....... -.....+ +..+.
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l--~p~vl~~l~~y-----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~ 217 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPL--HPRVLHMLEEY-----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELA 217 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCcc--ChHHHHHHHHH-----hcCCceeeccchhcchhhhHHhhhHHhccccccc
Confidence 1224567899999999999641111 11222222222 68899999999998765432 1111111 11111
Q ss_pred HHHHhhhccccccccCcccCCCC----CCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 208 KLRASRSAVSEADVTNDFTLGIP----GQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~----~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
..... +.+.+.+... ...-.|++. -.+|.+||++|+ |+++.+||...+||
T Consensus 218 ~~kl~--------v~~~f~~~p~~~~~~~~~gwshf---e~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 218 KLKLE--------VQEKFTDVPSDEKWRTICGWSHF---ERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hhhhh--------HHHHhccCCcccccccccCcccc---eeEEEEecccccCHHHHHHHHHhcCCC
Confidence 10000 0001111000 011112222 258999999999 99999999998886
No 236
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.74 E-value=5.4e-17 Score=143.69 Aligned_cols=119 Identities=20% Similarity=0.183 Sum_probs=77.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--ccccc--------------------ceeecc-----ccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT--------------------VTSMEP-----NEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~--------------------~~~~~~-----~~~~~~~~~~~~~~~ 114 (268)
++..+|+++|+.++|||||+.+|+... ..... .....+ +.+...-. .....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~--~~~~~ 82 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIAL--WKFET 82 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEE--EEecC
Confidence 456789999999999999999986421 10000 000000 01111111 11222
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCH-------HHHHHHHHHHHhcCCccCCCC-cEEEEeec
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNC-------SAASEYLYDILTNSTVVKKKI-PVLICCNK 186 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~-piivv~nK 186 (268)
..+.++++|||||++|......++..+|++|+|+|+.++ .+ .+..+.+..... .++ ++++++||
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G--~~e~g~~~~~qT~eh~~~~~~------~gi~~iIV~vNK 154 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG--GFEAGISKDGQTREHALLAFT------LGVKQMICCCNK 154 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC--ceecccCCCchHHHHHHHHHH------cCCCcEEEEEEc
Confidence 336899999999999999999999999999999999985 12 233333332222 466 47889999
Q ss_pred CCCC
Q 024385 187 TDKV 190 (268)
Q Consensus 187 ~Dl~ 190 (268)
+|+.
T Consensus 155 mD~~ 158 (447)
T PLN00043 155 MDAT 158 (447)
T ss_pred ccCC
Confidence 9986
No 237
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=3.8e-17 Score=135.52 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=79.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceee-------------cc-----ccceEEeecccccCCceeeEEEEeCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM-------------EP-----NEDTFVLHSESTKKGKIKPVHLVDVP 125 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~i~Dtp 125 (268)
.++|+++|++|+|||||+++|+...-......+. .+ +.........+.+.+ +.+++||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~--~~i~liDTP 79 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD--CVINLLDTP 79 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC--EEEEEEECC
Confidence 4689999999999999999997532100000000 00 000001111223333 789999999
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
|+.+|......+++.+|++|+|+|++++.+ .....++ ..... .++|+++++||+|+....
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~--~~~~~i~-~~~~~-----~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVE--PQTRKLF-EVCRL-----RGIPIITFINKLDREGRD 139 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCcc--HHHHHHH-HHHHh-----cCCCEEEEEECCccCCCC
Confidence 999998888888999999999999988621 2222333 33322 578999999999987654
No 238
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.73 E-value=4.4e-17 Score=135.92 Aligned_cols=128 Identities=24% Similarity=0.222 Sum_probs=81.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccc--------------cceEEeecccccCCceeeEEEEeCCCCCCch
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPN--------------EDTFVLHSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
+|+++|++|+|||||+++++..........++... .+.......+.+.+ +.+++|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 58999999999999999987532110001011000 00000001122233 689999999999888
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
..+..+++.+|++++|+|++.+ ... .....+..+.. .++|+++|+||+|+... ..+...+.+.+
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g-~~~-~~~~~~~~~~~------~~~p~iivvNK~D~~~~-~~~~~~~~l~~ 142 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSG-VEV-GTEKLWEFADE------AGIPRIIFINKMDRERA-DFDKTLAALQE 142 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCC-CCH-HHHHHHHHHHH------cCCCEEEEEECCccCCC-CHHHHHHHHHH
Confidence 8888999999999999999987 322 22222332222 57899999999999765 33334444433
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.73 E-value=6.7e-17 Score=134.20 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=77.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCccccc---------ceeecc-----ccceEEeecccccCCceeeEEEEeCCCCCCch
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGT---------VTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
+|+++|++|+|||||+++|+...-.... .....+ +.+.......+.+.+ +.+.++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 5899999999999999999642110000 000001 111111111223334 689999999999999
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
..+..+++.+|++|+|+|+.++.. ......+..+.. .++|+++++||+|+...
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~--~~t~~~~~~~~~------~~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVE--PQTETVWRQADR------YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCCCCCC
Confidence 999999999999999999998622 222333333322 67899999999998753
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.73 E-value=1.5e-16 Score=142.07 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=75.7
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccccc----------e------------eec-----cccceEEeecccc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTV----------T------------SME-----PNEDTFVLHSEST 111 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~~----------~------------~~~-----~~~~~~~~~~~~~ 111 (268)
.+...+|+++|++++|||||+++|+...- ..... . ... .+.+.........
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35678999999999999999999875431 10000 0 000 0011111111122
Q ss_pred cCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 112 KKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 112 ~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
.++ ..+.++|||||.+|.......+..+|++++|+|+..+... ...+.+ .+.... ...|+++++||+|+..
T Consensus 104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~--qt~~~~-~l~~~l----g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD--QTRRHS-FIATLL----GIKHLVVAVNKMDLVD 174 (474)
T ss_pred cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc--cchHHH-HHHHHh----CCCceEEEEEeecccc
Confidence 233 5889999999999877777778999999999999886221 111111 122111 2347899999999974
No 241
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.72 E-value=8.6e-17 Score=144.76 Aligned_cols=136 Identities=18% Similarity=0.231 Sum_probs=87.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc--CCccc-c----------cceeecc---ccceEEeecccccCCceeeEEEEeCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQ-G----------TVTSMEP---NEDTFVLHSESTKKGKIKPVHLVDVP 125 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~-~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~Dtp 125 (268)
.+.++|+++|++|+|||||+++|+. +.... + +.....+ ..+............+.+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5678999999999999999999853 21110 0 0000000 01111111111222233789999999
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~ 205 (268)
|+.+|......+++.+|++|+|+|++++ .......+...... .++|+++++||+|+... ..+++.+.++..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g---v~~~t~~l~~~~~~-----~~~PiivviNKiD~~~~-~~~~ll~~i~~~ 159 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG---VETRTRKLMEVTRL-----RDTPIFTFMNKLDRDIR-DPLELLDEVENE 159 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEECccccCC-CHHHHHHHHHHH
Confidence 9999988888899999999999999986 22222333334432 57899999999998653 344555555544
Q ss_pred H
Q 024385 206 I 206 (268)
Q Consensus 206 l 206 (268)
+
T Consensus 160 l 160 (527)
T TIGR00503 160 L 160 (527)
T ss_pred h
Confidence 3
No 242
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=2.5e-16 Score=125.37 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=68.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhh-----c
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEF-----L 138 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~-----~ 138 (268)
+.+|+++|.+|+|||||+|.|++............. ...+........+....+.+|||||..+.......| +
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGV--VETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCc--cccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCc
Confidence 358999999999999999999986543211111110 000000000000111368999999987543333333 5
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
..+|++++|.|. . +......+...+.. .+.|+++|+||+|+..
T Consensus 79 ~~~d~~l~v~~~-~----~~~~d~~~~~~l~~-----~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 79 SEYDFFIIISST-R----FSSNDVKLAKAIQC-----MGKKFYFVRTKVDRDL 121 (197)
T ss_pred cCcCEEEEEeCC-C----CCHHHHHHHHHHHH-----hCCCEEEEEecccchh
Confidence 678888887432 2 33444444444443 4679999999999954
No 243
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.72 E-value=1.2e-16 Score=141.15 Aligned_cols=173 Identities=19% Similarity=0.164 Sum_probs=106.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCc---ccccce--eeccccceE---------------Eeeccc------ccCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST---HQGTVT--SMEPNEDTF---------------VLHSES------TKKG 114 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~---~~~~~~--~~~~~~~~~---------------~~~~~~------~~~~ 114 (268)
+....+|.++|+.++|||||+..|++... ..+... |+....... .++... ...+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 45778999999999999999999986432 111111 111100000 000000 0000
Q ss_pred ----ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 115 ----KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 115 ----~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
....+.++|+|||++|.......+..+|++++|+|+.++ ....+..+.+..+... .-.|+++|+||+|+.
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g-~~~~qT~ehl~i~~~l-----gi~~iIVvlNKiDlv 184 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES-CPQPQTSEHLAAVEIM-----KLKHIIILQNKIDLV 184 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC-ccchhhHHHHHHHHHc-----CCCcEEEEEeccccc
Confidence 013689999999999988888888999999999999974 1122233333322211 234689999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
+....++..+.+.+.+... ....++++++||++|+ ++.|+++|.+.+||
T Consensus 185 ~~~~~~~~~~ei~~~l~~~-----------------------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 185 KEAQAQDQYEEIRNFVKGT-----------------------------IADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred CHHHHHHHHHHHHHHHHhh-----------------------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 5332222222322222110 0234689999999999 99999999987764
No 244
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.71 E-value=5.1e-17 Score=141.84 Aligned_cols=145 Identities=19% Similarity=0.171 Sum_probs=110.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|+.||||||||-.+...+|+. .+.+...+..++.+++.+. +...++||+...+-+......++++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~----~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA 80 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVD----AVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKA 80 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccc----cccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhc
Confidence 467899999999999999999999998854 3333444455666666555 6789999998777677788999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
|++++|+++++. ++++.+...|..+++.......++|||+|+||+|.....+. .+...+...++++.+...
T Consensus 81 ~vi~lvyavd~~-~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-s~e~~~~pim~~f~EiEt 151 (625)
T KOG1707|consen 81 DVICLVYAVDDE-STVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-SDEVNTLPIMIAFAEIET 151 (625)
T ss_pred CEEEEEEecCCh-HHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-chhHHHHHHHHHhHHHHH
Confidence 999999999997 78898888777777765544579999999999999876544 222234444444444433
No 245
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.71 E-value=6.3e-16 Score=112.77 Aligned_cols=165 Identities=19% Similarity=0.326 Sum_probs=112.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-hhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-RPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-~~~~~~~~~~ 140 (268)
.+..+|+++|..++|||+++.++..++-..+ ....|+......-..-+.+|..-.+.++||+|...+ ..+-.+|++-
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~--~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPG--TELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCC--CccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 4678999999999999999999987764221 223333333333322333454457999999998877 5566789999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++++|||+.++ +||+.+...-..+-.+.. +..+||++++||+|+......+......
T Consensus 85 aDafVLVYs~~d~-eSf~rv~llKk~Idk~Kd--KKEvpiVVLaN~rdr~~p~~vd~d~A~~------------------ 143 (198)
T KOG3883|consen 85 ADAFVLVYSPMDP-ESFQRVELLKKEIDKHKD--KKEVPIVVLANKRDRAEPREVDMDVAQI------------------ 143 (198)
T ss_pred CceEEEEecCCCH-HHHHHHHHHHHHHhhccc--cccccEEEEechhhcccchhcCHHHHHH------------------
Confidence 9999999999998 888877655555544332 4789999999999997544332211111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
|++ ...+..++++|.+.. +-+-+-.+..+
T Consensus 144 ---------------Wa~-rEkvkl~eVta~dR~sL~epf~~l~~r 173 (198)
T KOG3883|consen 144 ---------------WAK-REKVKLWEVTAMDRPSLYEPFTYLASR 173 (198)
T ss_pred ---------------HHh-hhheeEEEEEeccchhhhhHHHHHHHh
Confidence 111 445788889998876 55555555544
No 246
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.71 E-value=1.6e-16 Score=148.43 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=85.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceee--------------ccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM--------------EPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|++|+|||||+++|+...-........ ..+++.......+.+.+ +.+++|||||+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence 456799999999999999999997422110000000 01111111122233344 68999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
.++......+++.+|++++|+|+.++ .... ....+..+.. .++|+++|+||+|+.... .....+.+.
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g-~~~~-~~~~~~~~~~------~~~p~ivviNK~D~~~~~-~~~~~~~i~ 152 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGG-VQPQ-SETVWRQANR------YEVPRIAFVNKMDKTGAN-FLRVVNQIK 152 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCC-CChh-HHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHH
Confidence 99988889999999999999999986 2222 2233333222 578999999999998643 333333333
No 247
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.71 E-value=4.2e-16 Score=125.60 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=102.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-----HhhhccC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-----LDEFLPQ 140 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-----~~~~~~~ 140 (268)
||+++|+.++||||..+-+..+-.+..+ ...+++.... ...+...+. ..+++||+||+..+... ....++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve--~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVE--KSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEE--EEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCce--EEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhc
Confidence 7999999999999999988876543322 2233332211 111211222 68999999999876443 5677899
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|||+|+... + +.+...++...+.......+++.+.++++|+|+.......++.+.+.+.+.+......
T Consensus 77 v~~LIyV~D~qs~-~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~------ 148 (232)
T PF04670_consen 77 VGVLIYVFDAQSD-D-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG------ 148 (232)
T ss_dssp ESEEEEEEETT-S-T-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred cCEEEEEEEcccc-c-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 9999999999953 2 4445455555444322234899999999999998776666666666555554311100
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCCchhHHHHHHhhcCC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQVKP 268 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~~p 268 (268)
.+.+.|+.+|-.+..+-+....+.+.+-|
T Consensus 149 -------------------~~~~~~~~TSI~D~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 149 -------------------IEDITFFLTSIWDESLYEAWSKIVQKLIP 177 (232)
T ss_dssp --------------------TSEEEEEE-TTSTHHHHHHHHHHHTTST
T ss_pred -------------------ccceEEEeccCcCcHHHHHHHHHHHHHcc
Confidence 11478999999887655555555554443
No 248
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=3.8e-16 Score=127.37 Aligned_cols=160 Identities=20% Similarity=0.260 Sum_probs=107.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------h
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------P 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~ 132 (268)
+....+.++|.||+|||||++++...+. .....+|..|+.+...+ ++. ..+++-|.||..+-. .
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~y------ddf-~q~tVADiPGiI~GAh~nkGlG~ 266 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNY------DDF-SQITVADIPGIIEGAHMNKGLGY 266 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeec------ccc-ceeEeccCccccccccccCcccH
Confidence 3456789999999999999999988754 33456788888774333 232 359999999976432 2
Q ss_pred hHhhhccCCCEEEEEEeCCCCC--CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 133 KLDEFLPQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
...+++..|+.++||+|.+.+. +.++.+...+.++-.+.. ...+.|.+||+||+|+.+.. .+.+++...+
T Consensus 267 ~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek-~L~~rp~liVaNKiD~~eae-----~~~l~~L~~~-- 338 (366)
T KOG1489|consen 267 KFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK-GLADRPALIVANKIDLPEAE-----KNLLSSLAKR-- 338 (366)
T ss_pred HHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh-hhccCceEEEEeccCchhHH-----HHHHHHHHHH--
Confidence 3556778999999999999861 224444443333322211 12688999999999995221 1112221111
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+..++++||++|+ +++|.+.|.+.
T Consensus 339 -----------------------------lq~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 339 -----------------------------LQNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred -----------------------------cCCCcEEEeeeccccchHHHHHHHhhc
Confidence 122369999999999 99999988764
No 249
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=4.7e-17 Score=139.72 Aligned_cols=203 Identities=14% Similarity=0.174 Sum_probs=143.1
Q ss_pred CCccHHhHHHHHHHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 9 LPEGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 9 ~~~~~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...++.++.+.+.+.++|+..++.+..+...|+......++..+.+ .+...+++++|.||+|||||+|.++...
T Consensus 119 ~~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~rlPsI------Dp~trTlllcG~PNVGKSSf~~~vtrad 192 (620)
T KOG1490|consen 119 YGDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSRLPAI------DPNTRTLLVCGYPNVGKSSFNNKVTRAD 192 (620)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC------CCCcCeEEEecCCCCCcHhhcccccccc
Confidence 3477889999999999999999999999999998888888877665 5788999999999999999999988776
Q ss_pred cccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc----hhhHhh-----hccCCCEEEEEEeCCCCC-CCHH
Q 024385 89 THQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL----RPKLDE-----FLPQAAGIVFVVDALEFL-PNCS 158 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~----~~~~~~-----~~~~~d~ii~v~d~~~~~-~~~~ 158 (268)
.. +..+..++.... -. +.+.+-..++++||||..+. +..... ..+--.+|+|++|.++.+ .+..
T Consensus 193 ve---vqpYaFTTksL~-vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva 266 (620)
T KOG1490|consen 193 DE---VQPYAFTTKLLL-VG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVA 266 (620)
T ss_pred cc---cCCcccccchhh-hh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHH
Confidence 52 222222221111 11 11222258899999997652 111111 111224699999998753 3566
Q ss_pred HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeecc
Q 024385 159 AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQ 238 (268)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~ 238 (268)
.....+..+... ..+.|+|+|+||+|+....+.++-.+.+.+.+..
T Consensus 267 ~QvkLfhsIKpL----FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~------------------------------ 312 (620)
T KOG1490|consen 267 AQVKLYHSIKPL----FANKVTILVLNKIDAMRPEDLDQKNQELLQTIID------------------------------ 312 (620)
T ss_pred HHHHHHHHhHHH----hcCCceEEEeecccccCccccCHHHHHHHHHHHh------------------------------
Confidence 666666655442 3799999999999998887776666555554443
Q ss_pred CCceeEEEEeeeccCC-chhH
Q 024385 239 CHNKVSVAEASGLTGE-ISQV 258 (268)
Q Consensus 239 ~~~~~~~~~~Sa~~g~-i~~l 258 (268)
..+++++++|..+.+ +.++
T Consensus 313 -~~~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 313 -DGNVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred -ccCceEEEecccchhceeeH
Confidence 556899999999876 4443
No 250
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.6e-16 Score=142.08 Aligned_cols=150 Identities=27% Similarity=0.360 Sum_probs=109.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccccccee--eccccceEEeecccccCCceeeEEEEeCCCCCCchhh------H
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS--MEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------L 134 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------~ 134 (268)
+..+++++|.||||||||+|+|++.+...+..+. ++...+. ....+ ..++++|+||.-..... .
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~------~~~~~--~~i~ivDLPG~YSL~~~S~DE~Va 73 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGK------LKYKG--HEIEIVDLPGTYSLTAYSEDEKVA 73 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEE------EEecC--ceEEEEeCCCcCCCCCCCchHHHH
Confidence 4567999999999999999999998764444332 2222222 23334 47999999996544322 3
Q ss_pred hhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 135 DEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 135 ~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
.+|+ ...|++|-|+|+++. ++......++++ -+.|+++++|++|........-..+.+++.
T Consensus 74 r~~ll~~~~D~ivnVvDAtnL----eRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~------- 136 (653)
T COG0370 74 RDFLLEGKPDLIVNVVDATNL----ERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIRIDIEKLSKL------- 136 (653)
T ss_pred HHHHhcCCCCEEEEEcccchH----HHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcccHHHHHHH-------
Confidence 4555 357999999999995 555555666665 688999999999998776655555556553
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..++++++||++|+ ++++.+.+.+.
T Consensus 137 ----------------------------LGvPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 137 ----------------------------LGVPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred ----------------------------hCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 34689999999999 99999888764
No 251
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.8e-17 Score=122.88 Aligned_cols=159 Identities=16% Similarity=0.261 Sum_probs=121.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++++++|..|.||||++++...+.|...+.++.........+.. ..| .+++..|||+|++.+......|+-++.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~t---n~g-~irf~~wdtagqEk~gglrdgyyI~~q 84 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDT---NRG-QIRFNVWDTAGQEKKGGLRDGYYIQGQ 84 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeec---ccC-cEEEEeeecccceeecccccccEEecc
Confidence 4679999999999999999999999997766665544332222221 123 379999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+.|+++|++.. -++.....|..++.+.. .++||++++||.|.........
T Consensus 85 cAiimFdVtsr-~t~~n~~rwhrd~~rv~----~NiPiv~cGNKvDi~~r~~k~k------------------------- 134 (216)
T KOG0096|consen 85 CAIIMFDVTSR-FTYKNVPRWHRDLVRVR----ENIPIVLCGNKVDIKARKVKAK------------------------- 134 (216)
T ss_pred eeEEEeeeeeh-hhhhcchHHHHHHHHHh----cCCCeeeeccceeccccccccc-------------------------
Confidence 99999999987 67889999999998754 6799999999999865431100
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+|- ...+++++++||++.- .+.=+-|+.+.+
T Consensus 135 ----------~v~~~-rkknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 135 ----------PVSFH-RKKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred ----------cceee-ecccceeEEeecccccccccchHHHhhhh
Confidence 00011 1457889999999865 777777777654
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.69 E-value=2.9e-16 Score=145.37 Aligned_cols=122 Identities=19% Similarity=0.116 Sum_probs=75.6
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cce-----eeccc----------------------cceEEeecccc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVT-----SMEPN----------------------EDTFVLHSEST 111 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~-----~~~~~----------------------~~~~~~~~~~~ 111 (268)
.+...+|+++|++|+|||||+++|+...-... ... +...+ .+.........
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 45667899999999999999999986432100 000 00000 01011111122
Q ss_pred cCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 112 KKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 112 ~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
..+ ..+.++|||||++|.......+..+|++++|+|+..+.. ....+.+..+... ...|+++++||+|+..
T Consensus 101 ~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~--~~t~e~~~~~~~~-----~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 101 TPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL--TQTRRHSFIASLL-----GIRHVVLAVNKMDLVD 171 (632)
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc--ccCHHHHHHHHHh-----CCCeEEEEEEeccccc
Confidence 233 578999999999887777777899999999999987621 1112222212111 2357899999999974
No 253
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.69 E-value=6.4e-16 Score=131.78 Aligned_cols=170 Identities=21% Similarity=0.305 Sum_probs=122.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC--ccccc-c-------eeec--cccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT-V-------TSME--PNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~-~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
.-++|+|+.+...|||||+..|+.+. |.... + ...+ ..++....+..+.+++ ++++|+|||||.+|
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--~~INIvDTPGHADF 81 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--TRINIVDTPGHADF 81 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--eEEEEecCCCcCCc
Confidence 45789999999999999999997653 21110 0 0111 2233344445566666 89999999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
.....+.+...|++++++|+.++ .+.+.+-.+...+. .+.+.|+|+||+|...+++.+-+.+.+.-.++ +
T Consensus 82 GGEVERvl~MVDgvlLlVDA~EG--pMPQTrFVlkKAl~------~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~-L- 151 (603)
T COG1217 82 GGEVERVLSMVDGVLLLVDASEG--PMPQTRFVLKKALA------LGLKPIVVINKIDRPDARPDEVVDEVFDLFVE-L- 151 (603)
T ss_pred cchhhhhhhhcceEEEEEEcccC--CCCchhhhHHHHHH------cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH-h-
Confidence 99999999999999999999997 46777777777776 57788999999999887765555444443222 1
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC-----------CchhHHHHHHhhcCC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG-----------EISQVEQFIREQVKP 268 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g-----------~i~~l~~~l~~~~~p 268 (268)
+.. -+ ...++++..||+.| +++.|++.|.+++|+
T Consensus 152 -----------------~A~-----de--QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 152 -----------------GAT-----DE--QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred -----------------CCC-----hh--hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 110 11 12357788898866 288999999999885
No 254
>PRK13351 elongation factor G; Reviewed
Probab=99.68 E-value=4.7e-16 Score=145.50 Aligned_cols=121 Identities=24% Similarity=0.224 Sum_probs=81.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc--------cc-cceeec-----cccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH--------QG-TVTSME-----PNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~--------~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|+.|+|||||+++|+...-. .. ...... ...+.......+.+.+ +.+++|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence 45689999999999999999999753210 00 000000 0000000011122233 78999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
.++...+..+++.+|++++|+|++++ ..... ...+..+.. .++|+++|+||+|+...
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~-~~~~~-~~~~~~~~~------~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTG-VQPQT-ETVWRQADR------YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCC-CCHHH-HHHHHHHHh------cCCCEEEEEECCCCCCC
Confidence 99999999999999999999999987 33332 233333322 57899999999999864
No 255
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=9.7e-16 Score=129.54 Aligned_cols=161 Identities=22% Similarity=0.193 Sum_probs=96.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--cccccce---------------------ee----ccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGTVT---------------------SM----EPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~~~---------------------~~----~~~~~~~~~~~~~~~~~ 114 (268)
++..+++++|+.++|||||+.+|+.+. ++...+. +. +.+.+...-. .....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~--~~fet 82 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAH--SKFET 82 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEE--EEeec
Confidence 567899999999999999999986432 1110000 00 0001111111 11222
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC--C---CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--P---NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~---~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
..+.++|+|+|||.+|-..+.....++|+.|+|+|+..++ . .-.+.++.+.-.... .-..+||++||+|+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKMD~ 157 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKMDL 157 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEcccc
Confidence 2268999999999999999999999999999999999871 0 111122222111111 34568999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC
Q 024385 190 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 254 (268)
Q Consensus 190 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~ 254 (268)
.+- +. +-.+.+..++..+..... ....+++|+||||.+|+
T Consensus 158 v~w-de-~rf~ei~~~v~~l~k~~G-----------------------~~~~~v~FIPiSg~~G~ 197 (428)
T COG5256 158 VSW-DE-ERFEEIVSEVSKLLKMVG-----------------------YNPKDVPFIPISGFKGD 197 (428)
T ss_pred ccc-CH-HHHHHHHHHHHHHHHHcC-----------------------CCccCCeEEecccccCC
Confidence 862 22 222233333333322211 11346899999999997
No 256
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=1.2e-15 Score=110.97 Aligned_cols=107 Identities=23% Similarity=0.293 Sum_probs=67.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh---------hHhh
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP---------KLDE 136 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---------~~~~ 136 (268)
+|+++|.+|+|||||+|+|++.+.. ..+..+..+...........+ ..+.++||||..+... ....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~---~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA---KVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS---EESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccc---cccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHH
Confidence 6899999999999999999986431 112222222222222223344 4678999999765311 1333
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
.+..+|++++|+|+++. .......+.+.++ .+.|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~---~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNP---ITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSH---SHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCC---CCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 44889999999997773 2222223322222 68899999998
No 257
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.66 E-value=1.5e-15 Score=128.52 Aligned_cols=86 Identities=27% Similarity=0.361 Sum_probs=59.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecc---------------cccCC-ceeeEEEEeCCCC-
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSE---------------STKKG-KIKPVHLVDVPGH- 127 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~DtpG~- 127 (268)
|+++|.+|+|||||+|++++...... ..+++.|+.+...+... ...++ ..+.+++|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998765221 13455666655443211 11122 2368999999998
Q ss_pred ---CCchhhHh---hhccCCCEEEEEEeCCC
Q 024385 128 ---SRLRPKLD---EFLPQAAGIVFVVDALE 152 (268)
Q Consensus 128 ---~~~~~~~~---~~~~~~d~ii~v~d~~~ 152 (268)
.+++.... .+++.||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 33444333 45899999999999974
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.66 E-value=1.9e-15 Score=141.13 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=85.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccc---------ee-----eccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV---------TS-----MEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|++|+|||||+++|+...-..... .. ...+.+.......+.+++ ..++++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 456799999999999999999997421100000 00 011111111112233344 68999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
.++...+...++.+|++|+|+|+.++.. ......+..+.. .++|+++++||+|+.... .....+.+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~--~qt~~i~~~~~~------~~~p~iv~iNK~D~~~~~-~~~~~~~i~~ 151 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVE--PQSETVWRQADK------YGVPRIVFVNKMDRIGAD-FFRSVEQIKD 151 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 9988889999999999999999998722 222233333322 578999999999998643 3334344433
No 259
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.3e-15 Score=127.78 Aligned_cols=126 Identities=22% Similarity=0.250 Sum_probs=93.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-h--------h
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-R--------P 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-~--------~ 132 (268)
+.+.+|+++|+||+|||||+|.|.+... .+.+..++++++.+...++++| +++.+.||+|..+- . .
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr---sIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~ 340 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDR---SIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIE 340 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCc---eEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHH
Confidence 5679999999999999999999999876 6778888899999998899999 79999999997651 1 1
Q ss_pred hHhhhccCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHhcCC---ccCCCCcEEEEeecCCCCCC
Q 024385 133 KLDEFLPQAAGIVFVVDALEFL-PNCSAASEYLYDILTNST---VVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~---~~~~~~piivv~nK~Dl~~~ 192 (268)
.....++.+|++++|+|+.... ++...+.+.+...-.... ......|++++.||+|+...
T Consensus 341 rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 341 RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 1335677899999999994431 223333344433322111 01145899999999999765
No 260
>PRK00007 elongation factor G; Reviewed
Probab=99.64 E-value=3.6e-15 Score=139.20 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=85.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc--CCccc-c------ccee-----eccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQ-G------TVTS-----MEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~-~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|++|+|||||+++|+. +.... + .... .....+.......+.+.+ ..++++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 4567999999999999999999974 21100 0 0000 011122222122233344 68999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
.++.......++.+|++|+|+|+..+.. .+....+..+.. .++|+++++||+|+.... .....+.+.+
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~--~qt~~~~~~~~~------~~~p~iv~vNK~D~~~~~-~~~~~~~i~~ 153 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVE--PQSETVWRQADK------YKVPRIAFVNKMDRTGAD-FYRVVEQIKD 153 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcc--hhhHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 9888888888999999999999988721 222333333332 678999999999998644 3334444433
No 261
>COG2262 HflX GTPases [General function prediction only]
Probab=99.64 E-value=2.7e-14 Score=120.96 Aligned_cols=156 Identities=24% Similarity=0.343 Sum_probs=107.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc--cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch--hhHh--
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR--PKLD-- 135 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~--~~~~-- 135 (268)
..-+.|.++|.+|+|||||+|+|++.... ..-+.|..|++.+..... | ..+.+-||-|.-+-- .+..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-----g--~~vlLtDTVGFI~~LP~~LV~AF 262 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-----G--RKVLLTDTVGFIRDLPHPLVEAF 262 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-----C--ceEEEecCccCcccCChHHHHHH
Confidence 34678999999999999999999976542 223567777766655542 3 478999999965321 1111
Q ss_pred ----hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 136 ----EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 136 ----~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
.....+|.++.|+|++++ . ......-..+++..... ...|+|+|.||+|+..... .... +..
T Consensus 263 ksTLEE~~~aDlllhVVDaSdp-~-~~~~~~~v~~vL~el~~--~~~p~i~v~NKiD~~~~~~---~~~~----~~~--- 328 (411)
T COG2262 263 KSTLEEVKEADLLLHVVDASDP-E-ILEKLEAVEDVLAEIGA--DEIPIILVLNKIDLLEDEE---ILAE----LER--- 328 (411)
T ss_pred HHHHHHhhcCCEEEEEeecCCh-h-HHHHHHHHHHHHHHcCC--CCCCEEEEEecccccCchh---hhhh----hhh---
Confidence 233579999999999997 4 34444444555554332 5699999999999875433 1111 110
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
... ..+.+||++|. ++.|++.|.+.++
T Consensus 329 ----------------------------~~~-~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 329 ----------------------------GSP-NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred ----------------------------cCC-CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 111 47889999999 9999999988764
No 262
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.64 E-value=3.2e-15 Score=124.69 Aligned_cols=136 Identities=15% Similarity=0.294 Sum_probs=84.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccce------eeccccceEEeecccccCCceeeEEEEeCCCCCCchhh----
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT------SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK---- 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---- 133 (268)
.++|+++|.+|+|||||+|+|.+..+...... ...++.........+..+|..+.+++|||||..+....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 56899999999999999999998876432110 12222222233334445666678999999996543211
Q ss_pred ----------Hh------------hhcc--CCCEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 134 ----------LD------------EFLP--QAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 134 ----------~~------------~~~~--~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
.. .++. .+|+++|+++++.. .+... .+.+..+. ..+|+++|+||+|
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~--~l~~~D~~~lk~l~-------~~v~vi~VinK~D 154 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH--GLKPLDIEFMKRLS-------KRVNIIPVIAKAD 154 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC--CCCHHHHHHHHHHh-------ccCCEEEEEECCC
Confidence 01 1222 47889999998763 23333 33333332 3689999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 024385 189 KVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~ 208 (268)
+..........+.+.+.++.
T Consensus 155 ~l~~~e~~~~k~~i~~~l~~ 174 (276)
T cd01850 155 TLTPEELKEFKQRIMEDIEE 174 (276)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 97644444445555555544
No 263
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=6.8e-15 Score=118.33 Aligned_cols=170 Identities=18% Similarity=0.284 Sum_probs=114.2
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-------chhh
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-------LRPK 133 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-------~~~~ 133 (268)
.....+++++|.+|+|||||+|+|..++...- +..+...+........+++ ..+.+|||||.++ ++..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v---~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~ 110 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEV---SKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQL 110 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCcee---eecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHH
Confidence 45778999999999999999999997665221 1111111111222233344 4789999999876 6677
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC---------CHHHHHHHHHH
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH---------TKEFIRKQMEK 204 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~---------~~~~~~~~l~~ 204 (268)
...++...|.+++++|+.++ .+..-..++.++.... .+.|+++++|.+|..... ....+++.+++
T Consensus 111 ~~d~l~~~DLvL~l~~~~dr--aL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDR--ALGTDEDFLRDVIILG----LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred HHHHhhhccEEEEeccCCCc--cccCCHHHHHHHHHhc----cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence 78899999999999999986 3445556666666543 458999999999986542 33556677777
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+.+...+..+. +++..|+-.+- ++.+...+.+.+|
T Consensus 185 k~~~~~~~~q~V~--------------------------pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 185 KAEALGRLFQEVK--------------------------PVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHHHHHHhhcC--------------------------CeEEeccccCccHHHHHHHHHHhCc
Confidence 7766644443321 34445545554 7777777776654
No 264
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.61 E-value=2.3e-14 Score=114.05 Aligned_cols=137 Identities=17% Similarity=0.225 Sum_probs=80.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-------hH---
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP-------KL--- 134 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-------~~--- 134 (268)
.+|+++|.+|+|||||+|.+++......... .+..+.........+.| ..+.++||||..+... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~--~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS--ASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC--CCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHH
Confidence 3799999999999999999998764221110 00111111111122244 5799999999765421 11
Q ss_pred -hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 135 -DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 135 -~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
.....+.|++++|+|+...........+++..+... ..-.++++|+|+.|.......++....-...++.+
T Consensus 77 ~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~----~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l 148 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE----KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRL 148 (196)
T ss_pred HHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh----HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHH
Confidence 122357899999999987422333444444444321 12368899999999877655554433333344444
No 265
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.4e-14 Score=122.85 Aligned_cols=137 Identities=21% Similarity=0.259 Sum_probs=100.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH--cCCc--------------ccccceeeccccceEEeecccccCCceeeEEEEeCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR--DGST--------------HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVP 125 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dtp 125 (268)
.++++++|+-+|++|||||..+|+ ++.. ..+....++.+.+.....+.++.+...+.+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 467889999999999999998863 2211 111111233344444444555555555899999999
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~ 205 (268)
||++|..-.-+-+..+|.+++|+|+..+ ++.....|-++.+. .++||+-++||+|.... .+-++...++++
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG---iE~qT~KLfeVcrl-----R~iPI~TFiNKlDR~~r-dP~ELLdEiE~~ 160 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG---IEPQTLKLFEVCRL-----RDIPIFTFINKLDREGR-DPLELLDEIEEE 160 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC---ccHHHHHHHHHHhh-----cCCceEEEeeccccccC-ChHHHHHHHHHH
Confidence 9999999999999999999999999998 55555566666654 79999999999998764 445566666655
Q ss_pred HH
Q 024385 206 ID 207 (268)
Q Consensus 206 l~ 207 (268)
+.
T Consensus 161 L~ 162 (528)
T COG4108 161 LG 162 (528)
T ss_pred hC
Confidence 54
No 266
>PRK13768 GTPase; Provisional
Probab=99.59 E-value=1.5e-14 Score=119.28 Aligned_cols=138 Identities=23% Similarity=0.251 Sum_probs=76.3
Q ss_pred eEEEEeCCCCCCc---hhhHhh---hccC--CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 118 PVHLVDVPGHSRL---RPKLDE---FLPQ--AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 118 ~~~i~DtpG~~~~---~~~~~~---~~~~--~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
.+.+|||||+.++ +..... ++.. ++++++|+|+............++....... ..+.|+++|+||+|+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~---~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL---RLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH---HcCCCEEEEEEhHhh
Confidence 6899999998764 333322 2333 8999999999775222222222222222111 168999999999999
Q ss_pred CCCCCHHHHHHHHHH---HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 190 VTAHTKEFIRKQMEK---EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 190 ~~~~~~~~~~~~l~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
......+...+.+.. .+..+....... ...... +.. .+.+.....+++++||++++ +++|.++|.++
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~--~~~~~~--~~~-----~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQ--GLLSLE--LLR-----ALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchH--HHHHHH--HHH-----HHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 876555444443331 011110000000 000000 000 01111223578999999998 99999999998
Q ss_pred cC
Q 024385 266 VK 267 (268)
Q Consensus 266 ~~ 267 (268)
++
T Consensus 246 l~ 247 (253)
T PRK13768 246 FC 247 (253)
T ss_pred cC
Confidence 75
No 267
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.58 E-value=3e-14 Score=135.62 Aligned_cols=172 Identities=20% Similarity=0.222 Sum_probs=101.6
Q ss_pred CcHHHHHHHHHcCCcccccceeeccccceEEeeccccc------------CCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 75 SGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK------------KGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 75 ~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
++||||+.++.+.+........++-..+.+.++..... .-+.-.+.+||||||+.|.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999999887755444444444555444432100 000013899999999999888888889999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--------------HHHHHHHHHHHHHH
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------KEFIRKQMEKEIDK 208 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~~~~~~~l~~~l~~ 208 (268)
++++|+|++++.. ......+. ++.. .++|+++|+||+|+..... .+...+.++..+.+
T Consensus 552 ivlLVVDa~~Gi~--~qT~e~I~-~lk~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFK--PQTIEAIN-ILRQ-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCC--HhHHHHHH-HHHH-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999987511 12222222 2222 5789999999999964321 01112222222211
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+... ........... ....+....++++++||+||+ |++|.++|..
T Consensus 624 v~~~---L~~~G~~~e~~-------~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 624 LIGK---LYELGFDADRF-------DRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HhhH---HHhcCcchhhh-------hhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 1100 00000000000 012233567899999999999 9999998864
No 268
>PRK09866 hypothetical protein; Provisional
Probab=99.58 E-value=6.9e-14 Score=125.10 Aligned_cols=114 Identities=18% Similarity=0.311 Sum_probs=72.8
Q ss_pred eeEEEEeCCCCCCc-----hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRL-----RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
..+.++||||.... .......+..+|+|+||+|+... . ......+...+... ..+.|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~-~--s~~DeeIlk~Lkk~---~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL-K--SISDEEVREAILAV---GQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC-C--ChhHHHHHHHHHhc---CCCCCEEEEEEcccCCC
Confidence 46789999997642 22345678999999999999875 1 22223333333321 12369999999999864
Q ss_pred CCC--HHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 192 AHT--KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 192 ~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
... .+.+.+.+...+... ......++++||++|. ++.|.+.|.++
T Consensus 304 reeddkE~Lle~V~~~L~q~-----------------------------~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKG-----------------------------CITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cccchHHHHHHHHHHHHHhc-----------------------------CCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 322 333333333222210 0122369999999999 99999998874
No 269
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.58 E-value=8.2e-15 Score=117.36 Aligned_cols=193 Identities=20% Similarity=0.265 Sum_probs=112.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc---CCcccccceeeccccceEEeeccccc--------------------------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD---GSTHQGTVTSMEPNEDTFVLHSESTK-------------------------- 112 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 112 (268)
.++..|+++|..|+|||||+.||.. .+....++....|-....+++..+.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 5677899999999999999999853 22222234344443332222222111
Q ss_pred ---------------CCceeeEEEEeCCCCCCchh------hHhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 024385 113 ---------------KGKIKPVHLVDVPGHSRLRP------KLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILT 169 (268)
Q Consensus 113 ---------------~~~~~~~~i~DtpG~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~ 169 (268)
........++|||||.+.-. .+-..+ ...-+++||+|.........-+.+.+...-.
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 11225688999999875211 111112 1235789999987652222333333332211
Q ss_pred cCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEee
Q 024385 170 NSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS 249 (268)
Q Consensus 170 ~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~S 249 (268)
.++...|+|+|.||+|+.+..-..++...++.--+.+....+.. ..--.....+.+...+.+...+.+|
T Consensus 177 ---lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y--------~s~l~~SmSL~leeFY~~lrtv~VS 245 (366)
T KOG1532|consen 177 ---LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSY--------MSNLTRSMSLMLEEFYRSLRTVGVS 245 (366)
T ss_pred ---HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccch--------hHHhhhhHHHHHHHHHhhCceEEEe
Confidence 12378999999999999987766666666665444443211110 0000011223355557788999999
Q ss_pred eccCC-chhHHHHHHhh
Q 024385 250 GLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 250 a~~g~-i~~l~~~l~~~ 265 (268)
|.+|. .++++..+.+.
T Consensus 246 s~tG~G~ddf~~av~~~ 262 (366)
T KOG1532|consen 246 SVTGEGFDDFFTAVDES 262 (366)
T ss_pred cccCCcHHHHHHHHHHH
Confidence 99999 88888777654
No 270
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.2e-14 Score=129.84 Aligned_cols=189 Identities=19% Similarity=0.303 Sum_probs=117.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecc--------cccCCc----eeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE--------STKKGK----IKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~i~DtpG~~~ 129 (268)
-+.+-|||+|+.++|||-|+..+.+.+...+...+++-+++...++.. +.-++. .-.+.++|||||+.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 356789999999999999999999877654444444444444444332 111111 01468999999999
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC---CCH----HHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTK----EFIRKQM 202 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~---~~~----~~~~~~l 202 (268)
|..+..+....||.+|+|+|+..+.+ ...-.-..+++. .+.|+||++||+|..-. ... +.+.++-
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGle---pqtiESi~lLR~-----rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLE---PQTIESINLLRM-----RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCC---cchhHHHHHHHh-----cCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 99999999999999999999998732 222222233332 78999999999997521 111 1122222
Q ss_pred HHHHHHHHHhhhc----cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 203 EKEIDKLRASRSA----VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 203 ~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
...++.++.+... ......+..++ |.-.....-+.++|+||.+|+ |.+|.-||.++
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~Ly-------ykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELY-------YKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhe-------eecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 2222222222221 11112222221 111222456889999999999 99999888765
No 271
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.57 E-value=4e-14 Score=133.00 Aligned_cols=136 Identities=21% Similarity=0.313 Sum_probs=88.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccc-----cce-----------eeccccceEEeecccccCCceeeEEEEe
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQG-----TVT-----------SMEPNEDTFVLHSESTKKGKIKPVHLVD 123 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 123 (268)
.+.++|+++|+.++|||||+.+|+...- ... ... |+......+.+ ...+..+.++++|
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~----~~~~~~~~i~liD 93 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVH----EYEGKEYLINLID 93 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEE----EecCCcEEEEEEc
Confidence 4677999999999999999999975321 000 000 01101111111 1233347899999
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC---CCHHHHHH
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRK 200 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~---~~~~~~~~ 200 (268)
|||+.+|.......++.+|++|+|+|+..+.. ......+..... .+.|.++++||+|+... ...+++.+
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~--~~t~~~~~~~~~------~~~~~iv~iNK~D~~~~~~~~~~~~~~~ 165 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVM--PQTETVLRQALR------ERVKPVLFINKVDRLIKELKLTPQEMQQ 165 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCC--ccHHHHHHHHHH------cCCCeEEEEECchhhcccccCCHHHHHH
Confidence 99999999889999999999999999988722 223333333333 45688999999998743 24556666
Q ss_pred HHHHHHHHH
Q 024385 201 QMEKEIDKL 209 (268)
Q Consensus 201 ~l~~~l~~~ 209 (268)
.+.+.++.+
T Consensus 166 ~~~~~~~e~ 174 (731)
T PRK07560 166 RLLKIIKDV 174 (731)
T ss_pred HHHHHHHHH
Confidence 555544443
No 272
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.56 E-value=4.5e-14 Score=116.72 Aligned_cols=119 Identities=17% Similarity=0.222 Sum_probs=80.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCc--ccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hhHh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGST--HQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PKLD 135 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~~~ 135 (268)
-.|.++|.||+|||||++.+...+. .....+|..|+.+..... .+ ..+.+-|.||..+-. ....
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-----~~--~sfv~ADIPGLIEGAs~G~GLG~~FL 232 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-----GG--ESFVVADIPGLIEGASEGVGLGLRFL 232 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-----CC--CcEEEecCcccccccccCCCccHHHH
Confidence 4688999999999999999987654 223456666666654431 12 368999999976432 3355
Q ss_pred hhccCCCEEEEEEeCCCCC--CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 136 EFLPQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+++.+|.++++|+|.+... +..+.......++..+.. .-.+.|.+||+||+|+..
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~-~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP-KLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH-HhccCceEEEEeccCCCc
Confidence 7788999999999998652 123333333333333211 126889999999999654
No 273
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.54 E-value=1.4e-13 Score=130.83 Aligned_cols=145 Identities=18% Similarity=0.243 Sum_probs=96.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc--c----ccc-e-----------eeccccceEEeecc--------cccCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH--Q----GTV-T-----------SMEPNEDTFVLHSE--------STKKGK 115 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~--~----~~~-~-----------~~~~~~~~~~~~~~--------~~~~~~ 115 (268)
.+.++|+++|+.++|||||+.+|+...-. . ... . |+......+.+... -...+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 56789999999999999999999754310 0 000 0 11111111111100 001223
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---C
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---A 192 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~ 192 (268)
.+.++++|||||.+|.......++.+|++|+|+|+.++.. ......+..+.. .++|+++++||+|+.. .
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~--~~t~~~~~~~~~------~~~p~i~~iNK~D~~~~~~~ 168 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--VQTETVLRQALG------ERIRPVLTVNKMDRCFLELQ 168 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc--ccHHHHHHHHHH------CCCCEEEEEECCcccchhhc
Confidence 4788999999999999999999999999999999998732 222333444433 6889999999999873 2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhh
Q 024385 193 HTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.+.++....+.+.+++++....
T Consensus 169 ~~~~~~~~~~~~vi~~in~~~~ 190 (843)
T PLN00116 169 VDGEEAYQTFSRVIENANVIMA 190 (843)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 2456667777777777764443
No 274
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.54 E-value=1.7e-13 Score=119.34 Aligned_cols=87 Identities=30% Similarity=0.378 Sum_probs=59.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeeccc---------------ccCC-ceeeEEEEeCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES---------------TKKG-KIKPVHLVDVPG 126 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~~i~DtpG 126 (268)
.+|+++|.||+|||||+|+|++..+... ..+|+.|+.+...++..+ ..++ ....+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999998876322 234556666554432210 0122 225789999999
Q ss_pred CCC----chhhHhh---hccCCCEEEEEEeCC
Q 024385 127 HSR----LRPKLDE---FLPQAAGIVFVVDAL 151 (268)
Q Consensus 127 ~~~----~~~~~~~---~~~~~d~ii~v~d~~ 151 (268)
... ....... .++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 642 2233333 488999999999997
No 275
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=6.7e-14 Score=130.81 Aligned_cols=123 Identities=23% Similarity=0.235 Sum_probs=77.4
Q ss_pred EcCCCCcHHHHHHHHHcCCcccccceee--------------ccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh
Q 024385 70 AGLSGSGKTVLFYQLRDGSTHQGTVTSM--------------EPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD 135 (268)
Q Consensus 70 vG~~~~GKSsLi~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 135 (268)
+|++|+|||||+++|+...-.......+ ..+.+.......+.+.+ +.+.+|||||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 5999999999999995432100000000 01111111111223334 7899999999998888888
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
.+++.+|++++|+|++.+ .... ....+..+.. .++|+++|+||+|+.... .....+.+.
T Consensus 79 ~~l~~aD~vllvvd~~~~-~~~~-~~~~~~~~~~------~~~p~iiv~NK~D~~~~~-~~~~~~~l~ 137 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGG-VEPQ-TETVWRQAEK------YGVPRIIFVNKMDRAGAD-FFRVLAQLQ 137 (668)
T ss_pred HHHHHhCeEEEEEeCCCC-cCHH-HHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHH
Confidence 999999999999999986 3222 2233333332 578999999999997643 333333333
No 276
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.52 E-value=1.5e-15 Score=114.45 Aligned_cols=165 Identities=17% Similarity=0.202 Sum_probs=120.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCc-eeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGK-IKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
-++++|+|..|+|||+++++.....|...+..++.. ..--....+++. .+++++||.+|++++..+..-|++.+.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgv----dfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGV----DFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhH----HHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 468999999999999999999998886555444332 222233444443 267899999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+..+|||.+.. .+++....|..++...... .....|+++..||||.......+ .-..+.+
T Consensus 101 ~~~iVfdvt~s-~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~-~~~~~d~----------------- 161 (229)
T KOG4423|consen 101 GAFIVFDVTRS-LTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE-ATRQFDN----------------- 161 (229)
T ss_pred ceEEEEEcccc-ccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhh-hHHHHHH-----------------
Confidence 99999999997 7899999999988765432 23567899999999986532221 1112221
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
|..-.+-...+++|||... |++....+.+.
T Consensus 162 --------------f~kengf~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 162 --------------FKKENGFEGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred --------------HHhccCccceeeeccccccChhHHHHHHHHH
Confidence 1111333468999999976 88887777664
No 277
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.51 E-value=1.3e-13 Score=101.06 Aligned_cols=164 Identities=14% Similarity=0.172 Sum_probs=118.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
..+|.++|++..|||||+-...++.+.+....+.+. ......+.+.|..+.+.|||.+|++++.....-....+-+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~Gv----N~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGV----NFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCc----cceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 579999999999999999999998875444333322 2233445556777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
++|++|.+.+ +++..+.+|..+....+. ..+| |+||+|-|+.-..+++. ...+.+.....
T Consensus 96 IlFmFDLt~r-~TLnSi~~WY~QAr~~Nk---tAiP-ilvGTKyD~fi~lp~e~-Q~~I~~qar~Y-------------- 155 (205)
T KOG1673|consen 96 ILFMFDLTRR-STLNSIKEWYRQARGLNK---TAIP-ILVGTKYDLFIDLPPEL-QETISRQARKY-------------- 155 (205)
T ss_pred EEEEEecCch-HHHHHHHHHHHHHhccCC---ccce-EEeccchHhhhcCCHHH-HHHHHHHHHHH--------------
Confidence 9999999998 789999999988876542 4455 67899999876655543 22232222211
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
++ --+.+.+.||+-..- ++.+++.+..+
T Consensus 156 -------------Ak-~mnAsL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 156 -------------AK-VMNASLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred -------------HH-HhCCcEEEeeccccccHHHHHHHHHHH
Confidence 00 113367778887765 88888766543
No 278
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1.5e-13 Score=112.77 Aligned_cols=84 Identities=23% Similarity=0.305 Sum_probs=60.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hhHhh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PKLDE 136 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~~~~ 136 (268)
.-+++++|.|++|||||+++|++.+. .+..+.. ++..+++..+.++| ..++++|+||.-.-. .....
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s---eva~y~F-TTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS---EVADYPF-TTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc---cccccCc-eecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeee
Confidence 46899999999999999999998764 2222221 22233455555566 799999999865322 22445
Q ss_pred hccCCCEEEEEEeCCCC
Q 024385 137 FLPQAAGIVFVVDALEF 153 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~ 153 (268)
..+.||++++|+|+...
T Consensus 137 v~R~ADlIiiVld~~~~ 153 (365)
T COG1163 137 VARNADLIIIVLDVFED 153 (365)
T ss_pred eeccCCEEEEEEecCCC
Confidence 67899999999999976
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.51 E-value=1.7e-13 Score=128.54 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=88.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc--c---c--cceeecc-------ccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH--Q---G--TVTSMEP-------NEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~--~---~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
...++|+++|+.++|||||+++|+...-. . + ...+..+ +.............+..+.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45689999999999999999999752100 0 0 0000000 0000000001112344578999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC---CCHHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRKQMEK 204 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~---~~~~~~~~~l~~ 204 (268)
.+|.......++.+|++|+|+|+.++.. ......+..... .+.|+++|+||+|.... ...+++++.+..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~--~~t~~~~~~~~~------~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~ 168 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVM--PQTETVLRQALK------ENVKPVLFINKVDRLINELKLTPQELQERFIK 168 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCC--ccHHHHHHHHHH------cCCCEEEEEEChhcccchhcCCHHHHHHHHhh
Confidence 9999888999999999999999988621 122222322222 56788999999998753 245556665554
Q ss_pred HHHHH
Q 024385 205 EIDKL 209 (268)
Q Consensus 205 ~l~~~ 209 (268)
.+..+
T Consensus 169 ~~~~v 173 (720)
T TIGR00490 169 IITEV 173 (720)
T ss_pred hhHHH
Confidence 44433
No 280
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.49 E-value=1.4e-12 Score=105.86 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=69.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.....|+++|++|+|||||++.+....- . . +.....+.+.... ..+ ..+.++||||.. .......+.+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~-~-~--~~~~~~g~i~i~~---~~~--~~i~~vDtPg~~---~~~l~~ak~a 104 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYT-K-Q--NISDIKGPITVVT---GKK--RRLTFIECPNDI---NAMIDIAKVA 104 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcc-c-C--ccccccccEEEEe---cCC--ceEEEEeCCchH---HHHHHHHHhc
Confidence 4567899999999999999999986421 1 1 1111122121111 122 578999999864 3334456889
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE-EEEeecCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LICCNKTDKVT 191 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi-ivv~nK~Dl~~ 191 (268)
|++++|+|++.+. ......+...+.. .+.|. ++|+||+|+..
T Consensus 105 DvVllviDa~~~~---~~~~~~i~~~l~~-----~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 105 DLVLLLIDASFGF---EMETFEFLNILQV-----HGFPRVMGVLTHLDLFK 147 (225)
T ss_pred CEEEEEEecCcCC---CHHHHHHHHHHHH-----cCCCeEEEEEeccccCC
Confidence 9999999998762 2222233333332 45674 45999999874
No 281
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.48 E-value=3.1e-12 Score=106.55 Aligned_cols=138 Identities=13% Similarity=0.106 Sum_probs=78.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------H
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-------L 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~ 134 (268)
....+|+++|.+|+||||++|+|++....... ...+ .+..........+| ..+.+|||||..+.... .
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs--~f~s-~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVS--AFQS-EGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccccc--CCCC-cceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHH
Confidence 46789999999999999999999987642110 0111 11111111122344 68999999998864322 1
Q ss_pred hhhc--cCCCEEEEEEeCCC--CCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC--CCHHHHHHHHHHHHHH
Q 024385 135 DEFL--PQAAGIVFVVDALE--FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQMEKEIDK 208 (268)
Q Consensus 135 ~~~~--~~~d~ii~v~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~l~~~l~~ 208 (268)
..++ ...|+++||.+.+. ....-..+.+.+..+... .--.+++|++|+.|..+. .+.++....-...+++
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~----~iw~~~IVVfTh~d~~~pd~~~~e~fv~~~~~~lq~ 186 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK----DIWRKSLVVLTHAQFSPPDGLEYNDFFSKRSEALLR 186 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh----hhhccEEEEEECCccCCCCCCCHHHHHHhcHHHHHH
Confidence 1222 25899999955443 211112333333333321 134579999999997743 3444444443444444
No 282
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4.1e-13 Score=117.75 Aligned_cols=161 Identities=23% Similarity=0.218 Sum_probs=99.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--cccc--------------------cce--e-eccccceEEeecccccCCce
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQG--------------------TVT--S-MEPNEDTFVLHSESTKKGKI 116 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~--------------------~~~--~-~~~~~~~~~~~~~~~~~~~~ 116 (268)
.....++++|+.++|||||+.+++..- .... .+. + .+...+.........+....
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 356789999999999999999985421 0000 000 0 00001111111112223334
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHH------HHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSA------ASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
..++|+|+|||.+|.........++|+.++|+|++.. .|+. .......+++.- .-..++|++||+|+.
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~--~FE~gfd~~gQtrEha~llr~L----gi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG--EFESGFDPGGQTREHALLLRSL----GISQLIVAINKMDLV 328 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcc--hhhhccCCCCchHHHHHHHHHc----CcceEEEEeeccccc
Confidence 6899999999999999999999999999999999875 1221 122222333321 345789999999998
Q ss_pred CCC--CHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC
Q 024385 191 TAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 254 (268)
Q Consensus 191 ~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~ 254 (268)
.=. .-+++...+...+.+. +...+.++.|+|||+.+|+
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~--------------------------~gf~es~v~FIPiSGl~Ge 368 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKES--------------------------CGFKESSVKFIPISGLSGE 368 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHh--------------------------cCcccCCcceEecccccCC
Confidence 632 3355555555444221 1112556789999999996
No 283
>PTZ00416 elongation factor 2; Provisional
Probab=99.47 E-value=3.5e-13 Score=128.00 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=95.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccc-----cc-c-e-----------eeccccceEEeecc--cccCCceeeEEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-----GT-V-T-----------SMEPNEDTFVLHSE--STKKGKIKPVHL 121 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~-----~~-~-~-----------~~~~~~~~~~~~~~--~~~~~~~~~~~i 121 (268)
.+.++|+++|+.++|||||+++|+...-.. +. . . |+........+... ....++.+.+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 456799999999999999999997632100 00 0 0 00000001111100 000122467999
Q ss_pred EeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---CCCHHHH
Q 024385 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFI 198 (268)
Q Consensus 122 ~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~~~~~~~ 198 (268)
+|||||.+|.......++.+|++|+|+|+.++.. ......+..+.. .++|+++++||+|+.- ..+.++.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~--~~t~~~~~~~~~------~~~p~iv~iNK~D~~~~~~~~~~~~~ 168 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC--VQTETVLRQALQ------ERIRPVLFINKVDRAILELQLDPEEI 168 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC--ccHHHHHHHHHH------cCCCEEEEEEChhhhhhhcCCCHHHH
Confidence 9999999999889999999999999999998732 223334444443 5789999999999973 3466777
Q ss_pred HHHHHHHHHHHHHhhh
Q 024385 199 RKQMEKEIDKLRASRS 214 (268)
Q Consensus 199 ~~~l~~~l~~~~~~~~ 214 (268)
...+.+.+++++....
T Consensus 169 ~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 169 YQNFVKTIENVNVIIA 184 (836)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778777777775443
No 284
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.47 E-value=1.7e-13 Score=111.68 Aligned_cols=133 Identities=20% Similarity=0.218 Sum_probs=63.0
Q ss_pred eEEEEeCCCCCCchhhHh------hhcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 118 PVHLVDVPGHSRLRPKLD------EFLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 118 ~~~i~DtpG~~~~~~~~~------~~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
.+.++|||||.++...+. +.+. ..-++++++|+....+...-+...+..+.... +.+.|.+.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~---~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML---RLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH---HHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh---hCCCCEEEeeeccCc
Confidence 689999999987654433 2333 34478999999875232333444444433322 268999999999999
Q ss_pred CCCCCHHHHHHHHH--HHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 190 VTAHTKEFIRKQME--KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 190 ~~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.... .+...+.+. ..+..........-...+... ++.......|++.|+++++ +++|...+.+.
T Consensus 169 ~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~-----------l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 169 LSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAEL-----------LDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp S-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH-----------CCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred ccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-----------HhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 8744 322222221 001100000000000000000 1111222379999999999 99999988764
No 285
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.8e-12 Score=107.18 Aligned_cols=172 Identities=19% Similarity=0.222 Sum_probs=106.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC----cccccceeecccc------ceEEeec-ccccCCceeeEEEEeCCCCCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS----THQGTVTSMEPNE------DTFVLHS-ESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~----~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
+...++.++|+.++|||||.++|..-. |.. ...+.+... ....... .....+...+++++|+|||...
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk-~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDK-HPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhcc-CCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 345799999999999999999985422 111 111111111 1111111 1223566678999999999776
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
........+-.|..++|+|+..+.++...-.-.+.++ .....+||+||+|...+.......+.+.+.+..-
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--------~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt- 154 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT- 154 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--------hccceEEEEeccccccchhhhhHHHHHHHHHHHH-
Confidence 6666666667899999999998743222222222222 3456789999999987755433333333322221
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC----C-chhHHHHHHhhc
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----E-ISQVEQFIREQV 266 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g----~-i~~l~~~l~~~~ 266 (268)
-.+ -...++.+++++||+.| + |.+|.+.|.+++
T Consensus 155 --Le~---------------------t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 155 --LES---------------------TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred --HHh---------------------cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 000 11156789999999999 5 999999888763
No 286
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.45 E-value=3.2e-12 Score=108.45 Aligned_cols=198 Identities=20% Similarity=0.224 Sum_probs=109.9
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcC----Cccccccee
Q 024385 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG----STHQGTVTS 96 (268)
Q Consensus 21 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~----~~~~~~~~~ 96 (268)
...+.|+++++....+...-. ...++..+.. ...+...|.+.|++|+|||||+..+... .... .+..
T Consensus 21 ~~a~a~~it~~e~~~~~~~~~--~~~l~~~~~~------~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v-~vi~ 91 (332)
T PRK09435 21 RAALARAITLVESTRPDHRAL--AQELLDALLP------HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKV-AVLA 91 (332)
T ss_pred HHHHHHHHHHHhCCCchhhHH--HHHHHHHHhh------cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeE-EEEE
Confidence 567888888888777643111 0111111100 1356788999999999999999986321 1100 1111
Q ss_pred ecccc---------------------ceEEee--ccc--------------ccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 97 MEPNE---------------------DTFVLH--SES--------------TKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 97 ~~~~~---------------------~~~~~~--~~~--------------~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
.+|.. ..+... ... ..+...+.+.++||+|...-... ...
T Consensus 92 ~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~ 168 (332)
T PRK09435 92 VDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAG 168 (332)
T ss_pred eCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHH
Confidence 11110 001111 000 01112278899999998742222 466
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
.+|.+++|.++..+ ..+..... .+++ ..-++|+||+|+............+...+....
T Consensus 169 ~aD~vlvv~~p~~g-d~iq~~k~---gi~E--------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~--------- 227 (332)
T PRK09435 169 MVDFFLLLQLPGAG-DELQGIKK---GIME--------LADLIVINKADGDNKTAARRAAAEYRSALRLLR--------- 227 (332)
T ss_pred hCCEEEEEecCCch-HHHHHHHh---hhhh--------hhheEEeehhcccchhHHHHHHHHHHHHHhccc---------
Confidence 79999999875554 33333222 1222 223899999999865544444444443333110
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
. .......+++.+||++|+ +++|.++|.++++
T Consensus 228 ----------~------~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 228 ----------P------KDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred ----------c------cccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0 000112378999999999 9999999998753
No 287
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.45 E-value=8.8e-13 Score=109.34 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=79.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc--cccceeecc--------------------------ccceEEeecccccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEP--------------------------NEDTFVLHSESTKK 113 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~--------------------------~~~~~~~~~~~~~~ 113 (268)
+...+++.+|...-||||||.||+.+.-. +....+... +..+..+... .+.
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYR-yFs 82 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYR-YFS 82 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEee-ecc
Confidence 45678999999999999999999766420 000000000 0000111111 112
Q ss_pred CceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 114 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 114 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
....++.+.|||||+.|...+......||++|+++|+..+ +.+.......+...- .-..+++++||+||.+-.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G---vl~QTrRHs~I~sLL----GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG---VLEQTRRHSFIASLL----GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh---hHHHhHHHHHHHHHh----CCcEEEEEEeeecccccC
Confidence 2225899999999999999998899999999999999887 333322222222210 345789999999998653
No 288
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.45 E-value=4.9e-13 Score=94.57 Aligned_cols=138 Identities=20% Similarity=0.285 Sum_probs=93.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC----CCCchhhHhhhccC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG----HSRLRPKLDEFLPQ 140 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG----~~~~~~~~~~~~~~ 140 (268)
.+++++|..|||||||.+.|.+......... ...+ .++ ..+|||| |..+++.+......
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQ-------Ave~------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~d 64 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQ-------AVEF------NDK----GDIDTPGEYFEHPRWYHALITTLQD 64 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcccc-------eeec------cCc----cccCCchhhhhhhHHHHHHHHHhhc
Confidence 5799999999999999999988653211111 1111 111 3689999 33444445556678
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++++|-.++++.+.|... +.. ....|+|-|++|.|+....+.+..++.+.+
T Consensus 65 advi~~v~~and~~s~f~p~---f~~--------~~~k~vIgvVTK~DLaed~dI~~~~~~L~e---------------- 117 (148)
T COG4917 65 ADVIIYVHAANDPESRFPPG---FLD--------IGVKKVIGVVTKADLAEDADISLVKRWLRE---------------- 117 (148)
T ss_pred cceeeeeecccCccccCCcc---ccc--------ccccceEEEEecccccchHhHHHHHHHHHH----------------
Confidence 99999999999984333322 111 156679999999999865555544444432
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
-+.-++|++||.+.+ +++|++.|...
T Consensus 118 -------------------aGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 118 -------------------AGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred -------------------cCCcceEEEeccCcccHHHHHHHHHhh
Confidence 122379999999988 99999988754
No 289
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.44 E-value=2.7e-12 Score=108.57 Aligned_cols=192 Identities=17% Similarity=0.174 Sum_probs=105.1
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcC----Cccccccee
Q 024385 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG----STHQGTVTS 96 (268)
Q Consensus 21 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~----~~~~~~~~~ 96 (268)
.+.+.|+++.+....+.... ++..+. ........+.++|++|+|||||++.+... .... .+..
T Consensus 3 ~~~~~~~~~~~e~~~~~~~~------~~~~~~------~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v-~~i~ 69 (300)
T TIGR00750 3 RRALARAITLVENRHPEAKQ------LLDRIM------PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKV-AVIA 69 (300)
T ss_pred HHHHHHHHHHHhCCChHHHH------HHHhCC------cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeE-EEEe
Confidence 35678888888887765111 111111 11356788999999999999999997532 1100 0000
Q ss_pred ec-----------------------cccceEEeeccc--------------ccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 97 ME-----------------------PNEDTFVLHSES--------------TKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 97 ~~-----------------------~~~~~~~~~~~~--------------~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
.+ +.......+... ..+...+.+.|+||+|... .......
T Consensus 70 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~---~e~~i~~ 146 (300)
T TIGR00750 70 VDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQ---SEVDIAN 146 (300)
T ss_pred cCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCch---hhhHHHH
Confidence 00 000000001000 0111237889999999653 2223566
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
.+|.++++.+...+ .++......+ .++|.++|+||+|+............+...+..+...
T Consensus 147 ~aD~i~vv~~~~~~----~el~~~~~~l--------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~------- 207 (300)
T TIGR00750 147 MADTFVVVTIPGTG----DDLQGIKAGL--------MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRR------- 207 (300)
T ss_pred hhceEEEEecCCcc----HHHHHHHHHH--------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhcccc-------
Confidence 78888888655443 3333333222 3567899999999976543222222222111111000
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.. ....+++++||++|+ +++|.++|.++
T Consensus 208 ----------------~~--~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 208 ----------------ED--GWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred ----------------cc--CCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 00 011258999999999 99999999875
No 290
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=6e-13 Score=109.01 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=109.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc---cccc--ceeeccc-----------c---ceEEeecccccC----Cceee
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST---HQGT--VTSMEPN-----------E---DTFVLHSESTKK----GKIKP 118 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~---~~~~--~~~~~~~-----------~---~~~~~~~~~~~~----~~~~~ 118 (268)
....+|.++|+...|||||..+|.+--. ..+. --++.-. . ..+......... .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 4678999999999999999999865311 0000 0001000 0 001111111111 11257
Q ss_pred EEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH
Q 024385 119 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 198 (268)
Q Consensus 119 ~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 198 (268)
+.++|.|||+-....+.+-..-.|++++|++++++ -...+..+.|..+-.. .-..+++|-||+|+.......+-
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEp-cPQPQT~EHl~AleIi-----gik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEP-CPQPQTREHLMALEII-----GIKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCC-CCCCchHHHHHHHhhh-----ccceEEEEecccceecHHHHHHH
Confidence 89999999998777777766778999999999987 3344555555444332 45678999999999875444333
Q ss_pred HHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 199 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 199 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.+++.+.++- ..-.+.+++++||..+- |+.|.++|.+++|.
T Consensus 162 y~qIk~FvkG-----------------------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 162 YEQIKEFVKG-----------------------------TVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHHHhcc-----------------------------cccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 3333322221 11346699999999987 99999999999873
No 291
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.39 E-value=1.1e-11 Score=105.50 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=61.8
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
+.+.+||++|+...+..|.+++..+++++||+|.++.. ..+.+....+..+..+... .++|+++++||.
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~--~~~pill~~NK~ 238 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF--ANTSIILFLNKK 238 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc--cCCCEEEEccCh
Confidence 67899999999999999999999999999999998741 3467777778888776543 689999999999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
|+..
T Consensus 239 D~f~ 242 (317)
T cd00066 239 DLFE 242 (317)
T ss_pred HHHH
Confidence 9753
No 292
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.38 E-value=6.6e-12 Score=102.99 Aligned_cols=123 Identities=12% Similarity=0.149 Sum_probs=73.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh---h-----
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP---K----- 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~----- 133 (268)
....+|+++|.+|+|||||+|.|++...... ....+.+... .......++ ..+.+|||||..+... .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v--~~~~~~T~~~-~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAAT--SAFQSETLRV-REVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccc--CCCCCceEEE-EEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 5788999999999999999999998764211 1111221111 111223344 5789999999876521 1
Q ss_pred --Hhhhcc--CCCEEEEEEeCCCCCCCHH--HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 134 --LDEFLP--QAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 134 --~~~~~~--~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
...|+. ..|+++||...+....... .+.+.+.+.... ..-.++++|.||+|.....
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~----~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP----SIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh----hhHhCEEEEEeCCccCCCC
Confidence 223443 5788888875554311111 233333333221 1235799999999997654
No 293
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.37 E-value=2.3e-11 Score=104.45 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=61.9
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
..+.+||.+|+...+..|..++..++++|||+|+++.. ..+.+....+..+...... .++|+++++||.
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~--~~~piil~~NK~ 261 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF--ANTSIILFLNKI 261 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc--cCCcEEEEEecH
Confidence 56899999999999999999999999999999999741 3477777888888876543 789999999999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
|+..
T Consensus 262 D~~~ 265 (342)
T smart00275 262 DLFE 265 (342)
T ss_pred HhHH
Confidence 9863
No 294
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.4e-11 Score=109.49 Aligned_cols=143 Identities=23% Similarity=0.318 Sum_probs=94.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccce-------------------eeccccceEEeecccccCCceeeEEEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT-------------------SMEPNEDTFVLHSESTKKGKIKPVHLV 122 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~ 122 (268)
...++|.++|+-.+|||+|+..|..+.-++.... ++..+..+... -...++.+-++++
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l---~D~~~KS~l~nil 202 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVL---SDSKGKSYLMNIL 202 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEE---ecCcCceeeeeee
Confidence 4567899999999999999999976643222110 11111111111 1235666889999
Q ss_pred eCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---CCCHHHHH
Q 024385 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIR 199 (268)
Q Consensus 123 DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~~~~~~~~ 199 (268)
|||||.+|.......++.+|++++|+|+.++ - .-.....+....+ .+.|+++|+||+|+.- ..++....
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EG-V-mlntEr~ikhaiq------~~~~i~vviNKiDRLilELkLPP~DAY 274 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEG-V-MLNTERIIKHAIQ------NRLPIVVVINKVDRLILELKLPPMDAY 274 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccC-c-eeeHHHHHHHHHh------ccCcEEEEEehhHHHHHHhcCChHHHH
Confidence 9999999999999999999999999999997 2 2233333444443 7899999999999742 23344444
Q ss_pred HHHHHHHHHHHHhhhc
Q 024385 200 KQMEKEIDKLRASRSA 215 (268)
Q Consensus 200 ~~l~~~l~~~~~~~~~ 215 (268)
-.+.-.+..++...+.
T Consensus 275 ~KLrHii~~iN~~is~ 290 (971)
T KOG0468|consen 275 YKLRHIIDEINNLIST 290 (971)
T ss_pred HHHHHHHHHhcchhhh
Confidence 4444445544433333
No 295
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=6.8e-12 Score=115.54 Aligned_cols=123 Identities=22% Similarity=0.241 Sum_probs=84.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--cc-cc------ceee-----ccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQ-GT------VTSM-----EPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~-~~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|.++|+.++|||||..+++...- .. +. .... ....+...-...+.+.+ .+.++++|||||
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 4678999999999999999999863211 10 00 0000 00111111112233443 378999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
.+|.....+.++-+|++++|+|+.++. ..+....+.+... .++|.++++||+|....+
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV--~~QTEtv~rqa~~------~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGV--EPQTETVWRQADK------YGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCe--eecHHHHHHHHhh------cCCCeEEEEECccccccC
Confidence 999999999999999999999999982 2233344444443 789999999999997654
No 296
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.33 E-value=3.8e-11 Score=102.68 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=60.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccccceee-ccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTVTSM-EPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
....+|+|+|.+|+|||||||.|.+-.- .....+.. +.+.....+.. ... -.+.+||.||..........|+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~----p~~-pnv~lWDlPG~gt~~f~~~~Yl 107 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH----PKF-PNVTLWDLPGIGTPNFPPEEYL 107 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-----SS--TTEEEEEE--GGGSS--HHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC----CCC-CCCeEEeCCCCCCCCCCHHHHH
Confidence 4678999999999999999999975321 11111111 11122222221 111 2689999999765544455554
Q ss_pred -----cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 139 -----PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 139 -----~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
...|.+|++.+ .. +....-++...+.. .++|+.+|-+|+|.
T Consensus 108 ~~~~~~~yD~fiii~s-~r----f~~ndv~La~~i~~-----~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 108 KEVKFYRYDFFIIISS-ER----FTENDVQLAKEIQR-----MGKKFYFVRTKVDS 153 (376)
T ss_dssp HHTTGGG-SEEEEEES-SS------HHHHHHHHHHHH-----TT-EEEEEE--HHH
T ss_pred HHccccccCEEEEEeC-CC----CchhhHHHHHHHHH-----cCCcEEEEEecccc
Confidence 45787766543 33 45555555555543 78999999999996
No 297
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.2e-11 Score=100.30 Aligned_cols=172 Identities=19% Similarity=0.229 Sum_probs=105.6
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC---C----ccc-ccce--eec--cccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG---S----THQ-GTVT--SME--PNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~---~----~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
.++..+|..+|+.+.|||||...++.- . +.. ..+. ..+ ..++..+-+.++...+ ..+..+|+|||.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--rhyahVDcPGHa 86 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC--ceEEeccCCChH
Confidence 356789999999999999999887431 1 000 0000 000 0111111222222233 577899999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
+|-..+.....+.|+.|+|+.++++. +.+..+.+.-..+ -++| +++++||+|+.+.. ++.+..+-++.
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGp--mPqTrEHiLlarq------vGvp~ivvflnK~Dmvdd~---ellelVemEvr 155 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ------VGVPYIVVFLNKVDMVDDE---ELLELVEMEVR 155 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCC--CCcchhhhhhhhh------cCCcEEEEEEecccccCcH---HHHHHHHHHHH
Confidence 99888888888899999999999972 4444444432222 4664 67889999998743 23333333333
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeecc---C-----C-chhHHHHHHhhcCC
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT---G-----E-ISQVEQFIREQVKP 268 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~---g-----~-i~~l~~~l~~~~~p 268 (268)
++-..+ +| -..+.+++..||+. | + |.+|++++.+++|+
T Consensus 156 eLLs~y-------------------~f----~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 156 ELLSEY-------------------GF----PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred HHHHHc-------------------CC----CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 331111 11 12456778788763 2 1 78999999998875
No 298
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=7.2e-12 Score=98.18 Aligned_cols=139 Identities=19% Similarity=0.245 Sum_probs=94.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-----hhHhhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-----PKLDEF 137 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-----~~~~~~ 137 (268)
...||+++|.+|+||||+=..+..+.. ...+..++.+....+..+.+.|. .-+.+||.+|++.+. ...+..
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~---a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~i 78 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYI---ARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNI 78 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhh---hhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhh
Confidence 456899999999999998766654432 11122233333444555555554 478999999998543 234567
Q ss_pred ccCCCEEEEEEeCCCCC--CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 138 LPQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
++..+++++|+|++..+ ..+.....-+..++++. +...+.+..+|+|+...+..+.+-+.....+..+
T Consensus 79 F~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S----P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~ 148 (295)
T KOG3886|consen 79 FRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS----PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRL 148 (295)
T ss_pred heeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC----CcceEEEEEeechhcccchHHHHHHHHHHHHHHh
Confidence 78899999999998751 12333344445555543 8889999999999998887777766666655554
No 299
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2e-11 Score=104.42 Aligned_cols=156 Identities=22% Similarity=0.199 Sum_probs=101.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCccc---ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
.|+..|+-..|||||+..+++..-.. ..-..++...+.+.. ...+ ..+.++|.|||+++-..+-..+...|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~----~~~d--~~~~fIDvpgh~~~i~~miag~~~~d 75 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYR----KLED--GVMGFIDVPGHPDFISNLLAGLGGID 75 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEec----cCCC--CceEEeeCCCcHHHHHHHHhhhcCCc
Confidence 47889999999999999998764311 011111111111111 1122 48899999999999999989999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
.+++|+|++++ +.........++..- .-...++|+||+|+.+....++. +.+.++.. +
T Consensus 76 ~alLvV~~deG---l~~qtgEhL~iLdll----gi~~giivltk~D~~d~~r~e~~---i~~Il~~l----~-------- 133 (447)
T COG3276 76 YALLVVAADEG---LMAQTGEHLLILDLL----GIKNGIIVLTKADRVDEARIEQK---IKQILADL----S-------- 133 (447)
T ss_pred eEEEEEeCccC---cchhhHHHHHHHHhc----CCCceEEEEeccccccHHHHHHH---HHHHHhhc----c--------
Confidence 99999999876 222222223333321 34456999999999865433222 22222221 1
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.+++.+|+++|+ |++|.+.|.+..
T Consensus 134 -----------------l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -----------------LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -----------------cccccccccccccCCCHHHHHHHHHHhh
Confidence 234577999999999 999999988765
No 300
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.30 E-value=2.6e-11 Score=97.54 Aligned_cols=136 Identities=17% Similarity=0.234 Sum_probs=77.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------Hhh--
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-------LDE-- 136 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~~~-- 136 (268)
+|+++|.+|+||||++|.+++........... +.+..... .....+| ..+.++||||..+.... ...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~-~~t~~~~~-~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAK-SVTQECQK-YSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTS-S--SS-EE-EEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccC-Ccccccce-eeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 79999999999999999999887533221111 11111111 1124455 68999999996543211 111
Q ss_pred --hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHH-HHHHHHHHH
Q 024385 137 --FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK-QMEKEIDKL 209 (268)
Q Consensus 137 --~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~-~l~~~l~~~ 209 (268)
...+.++++||+........-....+++..+.... .-..++||.+..|.......++..+ .-...++.+
T Consensus 78 ~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~----~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~l 149 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE----IWKHTIVVFTHADELEDDSLEDYLKKESNEALQEL 149 (212)
T ss_dssp HHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG----GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHH
T ss_pred HhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH----HHhHhhHHhhhccccccccHHHHHhccCchhHhHH
Confidence 23568999999999865223444555555555432 2346899999999877666444333 222334544
No 301
>PTZ00258 GTP-binding protein; Provisional
Probab=99.28 E-value=5.6e-11 Score=102.76 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=58.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeeccc------ccCC---ceeeEEEEeCCCCCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES------TKKG---KIKPVHLVDVPGHSRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~i~DtpG~~~~ 130 (268)
....+|+++|.||||||||+|+|++...... ..+|..|..+....+... .... ...++.++||||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4667999999999999999999987654221 233445555544433110 0000 0135899999996532
Q ss_pred h-------hhHhhhccCCCEEEEEEeCC
Q 024385 131 R-------PKLDEFLPQAAGIVFVVDAL 151 (268)
Q Consensus 131 ~-------~~~~~~~~~~d~ii~v~d~~ 151 (268)
. ......++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 12344678899999999985
No 302
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.28 E-value=5.4e-11 Score=99.26 Aligned_cols=138 Identities=16% Similarity=0.269 Sum_probs=80.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccc------eeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh----
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTV------TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK---- 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---- 133 (268)
.++|+++|.+|+|||||+|.|.+........ .....+.........+.-++..+.++++||||..+....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 4689999999999999999999876532210 011111111222233444566789999999996542111
Q ss_pred ----------Hhhhc-------------cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 134 ----------LDEFL-------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 134 ----------~~~~~-------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
...|+ ...|+++|+++++.. .+...+-....-+. ..+++|-|+.|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~--~L~~~Di~~mk~Ls------~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH--GLKPLDIEFMKRLS------KRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS--SS-HHHHHHHHHHT------TTSEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc--cchHHHHHHHHHhc------ccccEEeEEeccccc
Confidence 11111 236899999999874 34444333333332 678899999999998
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 024385 191 TAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~~~ 209 (268)
........++.+...++..
T Consensus 156 t~~el~~~k~~i~~~l~~~ 174 (281)
T PF00735_consen 156 TPEELQAFKQRIREDLEEN 174 (281)
T ss_dssp -HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 7666666666666666543
No 303
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.28 E-value=6.2e-11 Score=94.22 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=62.0
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE--EEEeecCCCCCC--
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV--LICCNKTDKVTA-- 192 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi--ivv~nK~Dl~~~-- 192 (268)
....++++.|..-.... ... -+|.+|.|+|+.+. .... .... ..+.. ++++||+|+.+.
T Consensus 92 ~D~iiIEt~G~~l~~~~-~~~--l~~~~i~vvD~~~~-~~~~---~~~~----------~qi~~ad~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATF-SPE--LADLTIFVIDVAAG-DKIP---RKGG----------PGITRSDLLVINKIDLAPMVG 154 (199)
T ss_pred CCEEEEECCCCCccccc-chh--hhCcEEEEEEcchh-hhhh---hhhH----------hHhhhccEEEEEhhhcccccc
Confidence 45678888884221111 122 26789999999987 3221 1111 22333 899999999853
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 193 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
...+. +.+.+..+ ....+++++||++|+ ++++++||.++..
T Consensus 155 ~~~~~----~~~~~~~~------------------------------~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ADLGV----MERDAKKM------------------------------RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ccHHH----HHHHHHHh------------------------------CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 22222 22323321 224689999999999 9999999998764
No 304
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.27 E-value=1e-10 Score=93.85 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=86.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccce--------eecc----cc--ceEEeecc-------------c-cc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT--------SMEP----NE--DTFVLHSE-------------S-TK 112 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~--------~~~~----~~--~~~~~~~~-------------~-~~ 112 (268)
....+.++++|+.|+|||||++++........... .... .. ........ + ..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 35678899999999999999999865311000000 0000 00 00000000 0 00
Q ss_pred CCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 113 KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 113 ~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
......+.+++|.|..... ..+....+..+.|+|+.+. .. ..... ... ...|.++++||+|+...
T Consensus 99 ~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~-d~--~~~~~-~~~--------~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEG-DD--KPLKY-PGM--------FKEADLIVINKADLAEA 163 (207)
T ss_pred ccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcc-cc--hhhhh-HhH--------HhhCCEEEEEHHHcccc
Confidence 0012467788888831111 1122234566778888875 21 11111 111 34678999999999753
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 193 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
... .. ..+.+.++++ ....+++++||++|+ ++++++|+.++.+
T Consensus 164 ~~~-~~-~~~~~~l~~~------------------------------~~~~~i~~~Sa~~g~gv~~l~~~i~~~~~ 207 (207)
T TIGR00073 164 VGF-DV-EKMKADAKKI------------------------------NPEAEIILMSLKTGEGLDEWLEFLEGQVK 207 (207)
T ss_pred chh-hH-HHHHHHHHHh------------------------------CCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 221 11 1122222221 123579999999999 9999999998754
No 305
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.27 E-value=5.5e-11 Score=92.08 Aligned_cols=64 Identities=31% Similarity=0.487 Sum_probs=44.8
Q ss_pred eeEEEEeCCCCCCc----hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRL----RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
..+.|+||||.... ...+..|+..+|++|+|.+++.. -. ......+...... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~-~~-~~~~~~l~~~~~~-----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD-LT-ESDMEFLKQMLDP-----DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST-GG-GHHHHHHHHHHTT-----TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc-cc-hHHHHHHHHHhcC-----CCCeEEEEEcCC
Confidence 46899999997532 35577889999999999999996 22 2344445555543 344599999985
No 306
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.23 E-value=1.2e-10 Score=94.00 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=64.2
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
+.+.|+.|.|...-. -....-+|.+++|+-+..+ +.++.++.-+.++- =++|+||.|+... +
T Consensus 122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~G-D~iQ~~KaGimEia-----------Di~vVNKaD~~gA---~ 183 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLG-DEIQAIKAGIMEIA-----------DIFVVNKADRPGA---D 183 (266)
T ss_dssp -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTC-CCCCTB-TTHHHH------------SEEEEE--SHHHH---H
T ss_pred CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCc-cHHHHHhhhhhhhc-----------cEEEEeCCChHHH---H
Confidence 678888998864322 2334668999999999887 66666666665553 3899999995332 2
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.....+...+... .. ... .-..+++.+||.+|+ |++|.+.|.++
T Consensus 184 ~~~~~l~~~l~l~---~~----------~~~------------~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 184 RTVRDLRSMLHLL---RE----------RED------------GWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHHHHHHHHHC---ST----------SCT------------SB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc---cc----------ccc------------CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 2333333322210 00 000 112489999999999 99999999876
No 307
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.22 E-value=5.8e-10 Score=91.26 Aligned_cols=204 Identities=21% Similarity=0.261 Sum_probs=116.1
Q ss_pred HhHHHHHHHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccc-
Q 024385 14 EQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG- 92 (268)
Q Consensus 14 ~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~- 92 (268)
+.-..--.+.+.|+++++....+...-.+ .-++..+ .....+...|.|.|.||+|||||+..|...-...+
T Consensus 9 e~l~~GdrrAlARaITlvEs~~~~h~~~a--~~ll~~l------~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 9 ERLLAGDRRALARAITLVESRRPDHRALA--RELLRAL------YPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHcCCHHHHHHHHHHHhcCCchhhhHH--HHHHHHH------hhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 33333336778889898888777743331 1112211 11235678999999999999999998743211111
Q ss_pred --cceeeccc----cce-----------------EEee--cc--------------cccCCceeeEEEEeCCCCCCchhh
Q 024385 93 --TVTSMEPN----EDT-----------------FVLH--SE--------------STKKGKIKPVHLVDVPGHSRLRPK 133 (268)
Q Consensus 93 --~~~~~~~~----~~~-----------------~~~~--~~--------------~~~~~~~~~~~i~DtpG~~~~~~~ 133 (268)
.+-.++|. .+. |..+ +. ...+.-.+.+.|+.|.|.....
T Consensus 81 rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse-- 158 (323)
T COG1703 81 RVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE-- 158 (323)
T ss_pred EEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch--
Confidence 11112221 000 1000 00 0111122678889998864322
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
-.....+|.+++|.=+.-+ +.++.++.-+.++- =++|+||.|.... +.....+...++.....
T Consensus 159 -v~I~~~aDt~~~v~~pg~G-D~~Q~iK~GimEia-----------Di~vINKaD~~~A---~~a~r~l~~al~~~~~~- 221 (323)
T COG1703 159 -VDIANMADTFLVVMIPGAG-DDLQGIKAGIMEIA-----------DIIVINKADRKGA---EKAARELRSALDLLREV- 221 (323)
T ss_pred -hHHhhhcceEEEEecCCCC-cHHHHHHhhhhhhh-----------heeeEeccChhhH---HHHHHHHHHHHHhhccc-
Confidence 2334568999999888777 55666666665443 3899999995432 23333333333322100
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+....-.-+++.+||.+|+ +++|.+.|.++.
T Consensus 222 ----------------------~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 222 ----------------------WRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred ----------------------ccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 1111223489999999999 999999998764
No 308
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.19 E-value=6.3e-10 Score=95.24 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=57.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccc------cCC---ceeeEEEEeCCCCCCch--
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSEST------KKG---KIKPVHLVDVPGHSRLR-- 131 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~i~DtpG~~~~~-- 131 (268)
.+|+++|.||||||||+|+|++...... ..+|..|..+...++.... ... ....+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 5899999999999999999998763221 2345556555554443100 000 01258999999965421
Q ss_pred -----hhHhhhccCCCEEEEEEeCC
Q 024385 132 -----PKLDEFLPQAAGIVFVVDAL 151 (268)
Q Consensus 132 -----~~~~~~~~~~d~ii~v~d~~ 151 (268)
......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12334578999999999995
No 309
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.2e-10 Score=96.35 Aligned_cols=172 Identities=20% Similarity=0.173 Sum_probs=106.2
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC-------Ccccccceeecc-----ccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG-------STHQGTVTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~-------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
+++..+|.-+|+.+.|||||...++.- ++.....-.-.| .++....+ +.+........-.|+|||.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aH--veYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAH--VEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeee--eeeeccccccccCCCCchH
Confidence 466789999999999999998887421 110000000000 11111111 1112222456678999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
+|......-..+-|+.|+|+.++++ .+.+.++.+.-..+- .-..+++++||.|+.++... .+..+-++.+
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG--~MPQTrEHlLLArQV-----GV~~ivvfiNKvD~V~d~e~---leLVEmE~RE 198 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDG--PMPQTREHLLLARQV-----GVKHIVVFINKVDLVDDPEM---LELVEMEIRE 198 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCC--CCcchHHHHHHHHHc-----CCceEEEEEecccccCCHHH---HHHHHHHHHH
Confidence 9998888888899999999999997 366666666544432 23468899999999854332 2333333332
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeec---cC-------C-chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGL---TG-------E-ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~---~g-------~-i~~l~~~l~~~~~ 267 (268)
+-.. |..-..+.+++..||+ .| + |.+|++.+..++|
T Consensus 199 lLse-----------------------~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 199 LLSE-----------------------FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred HHHH-----------------------cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 2111 2222456788888876 33 2 7788888888765
No 310
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.19 E-value=7.5e-10 Score=92.97 Aligned_cols=142 Identities=17% Similarity=0.299 Sum_probs=95.3
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHHcCCccccc------ceeeccccceEEeecccccCCceeeEEEEeCCCCCCch--
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT------VTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-- 131 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-- 131 (268)
+..-.++|+++|++|.|||||+|.|++....... .....++.........+.-+|....++++||||..++.
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 3456789999999999999999999887442221 01122333333344445556777899999999976532
Q ss_pred ------------hhHhhhcc--------------CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEee
Q 024385 132 ------------PKLDEFLP--------------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 185 (268)
Q Consensus 132 ------------~~~~~~~~--------------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~n 185 (268)
.+.+.|+. ..++++|.+-++.. .+..+.-....-+. ..+.+|-|+-
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh--~l~~~DIe~Mk~ls------~~vNlIPVI~ 170 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH--GLKPLDIEAMKRLS------KRVNLIPVIA 170 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC--CCCHHHHHHHHHHh------cccCeeeeee
Confidence 12223331 36899999998875 45555443333332 5778899999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 186 KTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 186 K~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
|+|..........++.+.+.+...
T Consensus 171 KaD~lT~~El~~~K~~I~~~i~~~ 194 (373)
T COG5019 171 KADTLTDDELAEFKERIREDLEQY 194 (373)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHh
Confidence 999988777777777777766654
No 311
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=5.8e-10 Score=100.75 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=120.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc-----cce--e--eccccceEEe-ecccccCCceeeEEEEeCCCCCCch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG-----TVT--S--MEPNEDTFVL-HSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~-----~~~--~--~~~~~~~~~~-~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
...++++++.+.+.|||||...|...+-.-. .+. . .+.++...+. ...+...-+.+.++++|+|||.+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 3567899999999999999999875432000 000 0 0001111111 1222232233789999999999999
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---CCCHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~~~~~~~~~~l~~~l~~ 208 (268)
+......+-+|++++.+|+.++. ..+....+.+... .+...++|+||+|..- ...+.+....+.+.+++
T Consensus 87 sevssas~l~d~alvlvdvvegv--~~qt~~vlrq~~~------~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGV--CSQTYAVLRQAWI------EGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred hhhhhhhhhcCCcEEEEeecccc--chhHHHHHHHHHH------ccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 99999999999999999999973 3334444444433 6778899999999532 24667777778777777
Q ss_pred HHHhhhcccccc---ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC---chhHHHHHHhh
Q 024385 209 LRASRSAVSEAD---VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE---ISQVEQFIREQ 265 (268)
Q Consensus 209 ~~~~~~~~~~~~---~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~---i~~l~~~l~~~ 265 (268)
++...+..-+.- .++..+.. ..+..|++-.+| ++.+||..|. +++.-++-.+.
T Consensus 159 vn~~i~~~~~~~v~l~~~~~~i~--d~~~~F~p~kgN--Vif~~A~~~~~f~~~~fak~~~~k 217 (887)
T KOG0467|consen 159 VNGVIGQFLGGIVELDDNWENIE--DEEITFGPEDGN--VIFASALDGWGFGIEQFAKFYAKK 217 (887)
T ss_pred hhhHHHHhhcchhhccchhhhhh--hcceeecCCCCc--EEEEEecccccccHHHHHHHHHHh
Confidence 766655432210 01111111 334556665665 5568999886 55555554443
No 312
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.18 E-value=2.9e-10 Score=95.56 Aligned_cols=189 Identities=19% Similarity=0.169 Sum_probs=113.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceee----------------ccccceEEeecc--c-------------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM----------------EPNEDTFVLHSE--S------------- 110 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~--~------------- 110 (268)
+....+...|+.++|||||+..|+.+...++.-.+- ......+-+... +
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 345678999999999999999997766533221100 000000111000 0
Q ss_pred ccCCceeeEEEEeCCCCCCchhhHhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 111 TKKGKIKPVHLVDVPGHSRLRPKLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 111 ~~~~~~~~~~i~DtpG~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
.......-+.++||.||+.|-....+-+ ++.|-.++++.++++. ....++.+--.+. ...|++++++|+|
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~--~~~tkEHLgi~~a------~~lPviVvvTK~D 266 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV--TKMTKEHLGIALA------MELPVIVVVTKID 266 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc--chhhhHhhhhhhh------hcCCEEEEEEecc
Confidence 0011113578999999999866654443 6789999999999982 2333444444433 6899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc-CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 189 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT-NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.+......+.+.+...+.........+...+.. ......+. -..-+|++.+||.||+ ++-|.+++ .++
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~--------~~~vvPi~~tSsVTg~GldlL~e~f-~~L 337 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKA--------GRGVVPIFYTSSVTGEGLDLLDEFF-LLL 337 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhc--------CCceEEEEEEecccCccHHHHHHHH-HhC
Confidence 9988777777777776666543333333222211 11111111 1335899999999999 66554443 344
Q ss_pred C
Q 024385 267 K 267 (268)
Q Consensus 267 ~ 267 (268)
|
T Consensus 338 p 338 (527)
T COG5258 338 P 338 (527)
T ss_pred C
Confidence 3
No 313
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=4.9e-10 Score=94.72 Aligned_cols=142 Identities=15% Similarity=0.264 Sum_probs=93.9
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccc-----cceeeccccceEEeecccccCCceeeEEEEeCCCCCCch---
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG-----TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR--- 131 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~--- 131 (268)
++.-.++++++|++|.|||||+|.|+...+... .......+.........+.-+|...+++++||||..+..
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns 96 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS 96 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence 345578999999999999999999987754322 111111122223334445667777899999999976432
Q ss_pred -----------hhHhhhcc-------------CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 132 -----------PKLDEFLP-------------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 132 -----------~~~~~~~~-------------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
+..+.|+. ..++++|.+.++.. .+..+.-.+..-+. ..+.+|-|+-|+
T Consensus 97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh--gL~p~Di~~Mk~l~------~~vNiIPVI~Ka 168 (366)
T KOG2655|consen 97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH--GLKPLDIEFMKKLS------KKVNLIPVIAKA 168 (366)
T ss_pred ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC--CCcHhhHHHHHHHh------ccccccceeecc
Confidence 22333331 47899999999874 35555444433332 678899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 024385 188 DKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 188 Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
|..........++.+.+.+...
T Consensus 169 D~lT~~El~~~K~~I~~~i~~~ 190 (366)
T KOG2655|consen 169 DTLTKDELNQFKKRIRQDIEEH 190 (366)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc
Confidence 9987766666666666666643
No 314
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.16 E-value=1.6e-09 Score=92.90 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=72.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC----Cccccc--------ceeeccc---cceEEe--e---cccc-cCCceeeEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG----STHQGT--------VTSMEPN---EDTFVL--H---SEST-KKGKIKPVH 120 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~----~~~~~~--------~~~~~~~---~~~~~~--~---~~~~-~~~~~~~~~ 120 (268)
.....|.++|+.++|||||+|+|.+. +....+ .++..++ +++.+. + .++. .++...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 56788999999999999999999887 332000 2222222 111110 0 0111 233345899
Q ss_pred EEeCCCCCCchhh-----------------------------Hhhhcc-CCCEEEEEE-eCC----CCCCCHHHHHHHHH
Q 024385 121 LVDVPGHSRLRPK-----------------------------LDEFLP-QAAGIVFVV-DAL----EFLPNCSAASEYLY 165 (268)
Q Consensus 121 i~DtpG~~~~~~~-----------------------------~~~~~~-~~d~ii~v~-d~~----~~~~~~~~~~~~l~ 165 (268)
++||+|...-... ....++ .++..|+|. |.+ ........-..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999996532111 233445 789888888 775 11012333344444
Q ss_pred HHHhcCCccCCCCcEEEEeecCCCC
Q 024385 166 DILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 166 ~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.+.. .++|+++++||+|-.
T Consensus 175 eLk~------~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 175 ELKE------LNKPFIILLNSTHPY 193 (492)
T ss_pred HHHh------cCCCEEEEEECcCCC
Confidence 4443 799999999999943
No 315
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1e-10 Score=97.83 Aligned_cols=190 Identities=18% Similarity=0.185 Sum_probs=114.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccccc------------------ceeeccccceEEeecc-c----------ccCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT------------------VTSMEPNEDTFVLHSE-S----------TKKG 114 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~-~----------~~~~ 114 (268)
+.+++++|..++|||||+.-|+.+....+. ..++...+-.+..... + ..+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 578999999999999999988766542211 1111111100100000 0 0111
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccC--CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQ--AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~--~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
....++++|.+||.+|.......+.. .|..++|+++..+.. ....+.+.-+.. -++|+.++++|+|+...
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~--~tTrEHLgl~~A------L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT--WTTREHLGLIAA------LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc--cccHHHHHHHHH------hCCCeEEEEEeeccccc
Confidence 12468999999999987776655543 578899999988732 122333333332 68999999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 193 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
...+...+.+...+.+........-...-++....+.. ....+.++++.+|+.+|+ ++-+. .+..+++|
T Consensus 319 ~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~------~~s~nivPif~vSsVsGegl~ll~-~fLn~Lsp 388 (591)
T KOG1143|consen 319 QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQE------LCSGNIVPIFAVSSVSGEGLRLLR-TFLNCLSP 388 (591)
T ss_pred hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHH------hccCCceeEEEEeecCccchhHHH-HHHhhcCC
Confidence 88887777777777665444333211111111111110 112567899999999999 66444 45555554
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=1.4e-09 Score=88.36 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=45.4
Q ss_pred eeEEEEeCCCCCCc-------------hhhHhhhccC-CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEE
Q 024385 117 KPVHLVDVPGHSRL-------------RPKLDEFLPQ-AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 182 (268)
Q Consensus 117 ~~~~i~DtpG~~~~-------------~~~~~~~~~~-~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piiv 182 (268)
..++++||||.... ..+...|++. .+.+++|+|+...... .........+ . +.+.|+++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~-~d~l~ia~~l-d-----~~~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLAN-SDALKLAKEV-D-----PQGERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCc-hhHHHHHHHH-H-----HcCCcEEE
Confidence 47899999997531 1235567774 5689999998765222 1112222222 2 26789999
Q ss_pred EeecCCCCCCC
Q 024385 183 CCNKTDKVTAH 193 (268)
Q Consensus 183 v~nK~Dl~~~~ 193 (268)
|+||+|.....
T Consensus 198 ViTK~D~~~~~ 208 (240)
T smart00053 198 VITKLDLMDEG 208 (240)
T ss_pred EEECCCCCCcc
Confidence 99999998643
No 317
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.6e-09 Score=90.34 Aligned_cols=90 Identities=26% Similarity=0.366 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcc--cccceeeccccceEEeeccc----c--cC----CceeeEEEEeCCCCCC--
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSES----T--KK----GKIKPVHLVDVPGHSR-- 129 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~----~--~~----~~~~~~~i~DtpG~~~-- 129 (268)
..++.|+|.||+|||||+|.++..... .....|++|+.+...++... . .. -....+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 468999999999999999999987642 12467899988876654320 0 11 1125789999999653
Q ss_pred -----chhhHhhhccCCCEEEEEEeCCCC
Q 024385 130 -----LRPKLDEFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 130 -----~~~~~~~~~~~~d~ii~v~d~~~~ 153 (268)
........++.+|+++.|+|+.+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~d 110 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFGD 110 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence 234466778999999999999853
No 318
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1e-09 Score=86.74 Aligned_cols=154 Identities=15% Similarity=0.249 Sum_probs=96.4
Q ss_pred HHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccce-----eeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT-----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 54 ~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
...+..+..-.++|++||.+|.|||||+|.+........... .+..++..-.....+.-+|...+++++||||..
T Consensus 36 m~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfG 115 (336)
T KOG1547|consen 36 MRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFG 115 (336)
T ss_pred HHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcc
Confidence 334445556789999999999999999999876654332111 111111111222334456666789999999976
Q ss_pred Cch--------------hhHhhhcc--------------CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE
Q 024385 129 RLR--------------PKLDEFLP--------------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 180 (268)
Q Consensus 129 ~~~--------------~~~~~~~~--------------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi 180 (268)
+.. .+...|++ ..++++|.+.++.. ++..++-.+..-+. .-+.+
T Consensus 116 DqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh--sLrplDieflkrLt------~vvNv 187 (336)
T KOG1547|consen 116 DQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH--SLRPLDIEFLKRLT------EVVNV 187 (336)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC--ccCcccHHHHHHHh------hhhee
Confidence 532 12223332 36799999999885 45555433333222 34567
Q ss_pred EEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 181 LICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 181 ivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
+-|+-|.|...-....+.++.+.+++.......+.
T Consensus 188 vPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYP 222 (336)
T KOG1547|consen 188 VPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYP 222 (336)
T ss_pred eeeEeecccccHHHHHHHHHHHHHHHHhcCccccc
Confidence 88899999887777777778877777765444333
No 319
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.12 E-value=3.6e-10 Score=92.77 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=71.1
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
+++....+.+++++|++++|+|+.++..++..+..|+..+.. .++|+++|+||+||....... .+.+ +
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~------~~i~~vIV~NK~DL~~~~~~~--~~~~----~ 91 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA------QNIEPIIVLNKIDLLDDEDME--KEQL----D 91 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEECcccCCCHHHH--HHHH----H
Confidence 566777778999999999999999874589999998875543 689999999999996432211 1111 1
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
. |. ..+++++++||++|+ ++++++.+.+
T Consensus 92 ~---------------------------~~--~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 92 I---------------------------YR--NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred H---------------------------HH--HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 1 11 123579999999998 9999988765
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.12 E-value=1.4e-09 Score=90.25 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=25.6
Q ss_pred HHHhhcCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 57 QVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 57 ~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+.......+.++|.+|+|||||++++.+.
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445577889999999999999999887654
No 321
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.05 E-value=4.9e-09 Score=88.75 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=60.2
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
..+.++|.+||..-+..|.+.+.+++++|||++.++.. +.+.+....+..+..+... .+.++|+++||.
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F--~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF--ANTSIILFLNKK 272 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc--ccCcEEEEeecH
Confidence 67899999999988999999999999999999998642 2345556667777776554 789999999999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
||..
T Consensus 273 DLFe 276 (354)
T KOG0082|consen 273 DLFE 276 (354)
T ss_pred HHHH
Confidence 9964
No 322
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.05 E-value=8.3e-10 Score=90.95 Aligned_cols=150 Identities=21% Similarity=0.239 Sum_probs=96.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch--hh----
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR--PK---- 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~--~~---- 133 (268)
.....|.++|.+|||||||+++|+...... .-+.|.+|+...-..+ .| ..+.+.||-|...-- .+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-----sg--~~vlltDTvGFisdLP~~LvaAF 248 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-----SG--NFVLLTDTVGFISDLPIQLVAAF 248 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-----CC--cEEEEeechhhhhhCcHHHHHHH
Confidence 446789999999999999999999654411 1245555554333332 33 367889999954211 11
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc----EEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP----VLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p----iivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
.-.....+|.++-|+|++.+ . .+....-....+..... +..| ++=|-||+|.......+
T Consensus 249 ~ATLeeVaeadlllHvvDiShP-~-ae~q~e~Vl~vL~~igv--~~~pkl~~mieVdnkiD~e~~~~e~----------- 313 (410)
T KOG0410|consen 249 QATLEEVAEADLLLHVVDISHP-N-AEEQRETVLHVLNQIGV--PSEPKLQNMIEVDNKIDYEEDEVEE----------- 313 (410)
T ss_pred HHHHHHHhhcceEEEEeecCCc-c-HHHHHHHHHHHHHhcCC--CcHHHHhHHHhhccccccccccCcc-----------
Confidence 12344679999999999997 3 55555555555555332 2233 45577788876542211
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.+ -.+.+||++|+ ++++.+.+...+
T Consensus 314 --------------------------------E~n-~~v~isaltgdgl~el~~a~~~kv 340 (410)
T KOG0410|consen 314 --------------------------------EKN-LDVGISALTGDGLEELLKAEETKV 340 (410)
T ss_pred --------------------------------ccC-CccccccccCccHHHHHHHHHHHh
Confidence 111 15678999999 999999887654
No 323
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.02 E-value=1.3e-09 Score=84.03 Aligned_cols=80 Identities=21% Similarity=0.166 Sum_probs=51.5
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
.-|+|+|++++++.-....-.+ .. .=++|+||.|+.+.-..+ .+.+.+...++
T Consensus 120 ~~v~VidvteGe~~P~K~gP~i-----------~~-aDllVInK~DLa~~v~~d--levm~~da~~~------------- 172 (202)
T COG0378 120 LRVVVIDVTEGEDIPRKGGPGI-----------FK-ADLLVINKTDLAPYVGAD--LEVMARDAKEV------------- 172 (202)
T ss_pred eEEEEEECCCCCCCcccCCCce-----------eE-eeEEEEehHHhHHHhCcc--HHHHHHHHHHh-------------
Confidence 7899999999833211100000 11 347899999998654331 22333333332
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.+++.+|++||+ +++|.+|+....
T Consensus 173 -----------------np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 173 -----------------NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred -----------------CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 456789999999999 999999998765
No 324
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.98 E-value=1e-08 Score=92.73 Aligned_cols=120 Identities=14% Similarity=0.213 Sum_probs=71.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh------h----
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP------K---- 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~------~---- 133 (268)
..+|+++|.+|+||||++|.|++..... .....+.++.. .......+| ..+.++||||..+... .
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~--vss~~~~TTr~-~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFS--TDAFGMGTTSV-QEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcccccc--ccCCCCCceEE-EEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHH
Confidence 4689999999999999999999876321 11222222222 111122344 5799999999876421 1
Q ss_pred Hhhhcc--CCCEEEEEEeCCCCCCCHH--HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 134 LDEFLP--QAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 134 ~~~~~~--~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
...++. .+|++|||..........+ .+.+.+..+.-. .--..+|||.|+.|..+.
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~----~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP----SIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH----HhHcCEEEEEeCCccCCC
Confidence 222443 4799999987764311112 223333333321 133568999999998863
No 325
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.1e-08 Score=79.54 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=79.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh---HhhhccC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK---LDEFLPQ 140 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---~~~~~~~ 140 (268)
.++|++.|...|||||+-+-..++-.+..+. -.+.+.. . . .-++.+.-+.+.+||.||+.++-.. ....+++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTl-flESTsk-i--~-~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~ 101 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTSK-I--T-RDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRG 101 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCcee-EeeccCc-c--c-HhhhhhhhcceEEeecCCccccCCCccCHHHHHhc
Confidence 3679999999999999877655543221111 0000000 0 0 0011112257899999999876433 4566889
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 195 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 195 (268)
+.++|||+|+.+. +.+....+......+....+++.+=+++.|+|-....-.
T Consensus 102 ~gALifvIDaQdd---y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~k 153 (347)
T KOG3887|consen 102 VGALIFVIDAQDD---YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFK 153 (347)
T ss_pred cCeEEEEEechHH---HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhh
Confidence 9999999999985 444444455555544445588999999999998765533
No 326
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.94 E-value=2.3e-09 Score=88.84 Aligned_cols=85 Identities=25% Similarity=0.382 Sum_probs=55.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeeccc------ccCCc---eeeEEEEeCCCCCCchh---
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES------TKKGK---IKPVHLVDVPGHSRLRP--- 132 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~i~DtpG~~~~~~--- 132 (268)
++++|.||||||||+|+|++.+.... ..+|+.|..+...++... .+++. ...+.++|+||..+-.+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998775221 234555655555443310 00110 12589999999654221
Q ss_pred ----hHhhhccCCCEEEEEEeCC
Q 024385 133 ----KLDEFLPQAAGIVFVVDAL 151 (268)
Q Consensus 133 ----~~~~~~~~~d~ii~v~d~~ 151 (268)
.....++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 2334567899999999985
No 327
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.1e-08 Score=85.91 Aligned_cols=124 Identities=22% Similarity=0.301 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeec----ccccCCce----------------------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHS----ESTKKGKI---------------------- 116 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------------------- 116 (268)
..+-|+++|.-..||||+++.|+.+.++.. ....+|++..+..-. +-.+.|..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~-riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGL-RIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCcc-ccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 467799999999999999999999988532 222333333332210 00111110
Q ss_pred -----------eeEEEEeCCCCCC-----------chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc
Q 024385 117 -----------KPVHLVDVPGHSR-----------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV 174 (268)
Q Consensus 117 -----------~~~~i~DtpG~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (268)
-.++|+||||.-. |....+.+..+||.|+++||+... +--.+....+..+..
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKL-DIsdEf~~vi~aLkG----- 209 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKL-DISDEFKRVIDALKG----- 209 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhc-cccHHHHHHHHHhhC-----
Confidence 3689999999653 344466788999999999999875 323334444444433
Q ss_pred CCCCcEEEEeecCCCCCCCC
Q 024385 175 KKKIPVLICCNKTDKVTAHT 194 (268)
Q Consensus 175 ~~~~piivv~nK~Dl~~~~~ 194 (268)
..-.+-||+||.|.+....
T Consensus 210 -~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 210 -HEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred -CcceeEEEeccccccCHHH
Confidence 4557889999999986533
No 328
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.89 E-value=4.5e-09 Score=80.45 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=59.8
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
++....+.++++|++++|+|++++..... ..+...... .+.|+++|+||+|+... +... ... .+..
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~---~~l~~~~~~-----~~~p~iiv~NK~Dl~~~---~~~~-~~~-~~~~- 67 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS---RKLERYVLE-----LGKKLLIVLNKADLVPK---EVLE-KWK-SIKE- 67 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC---HHHHHHHHh-----CCCcEEEEEEhHHhCCH---HHHH-HHH-HHHH-
Confidence 35567778888999999999987522111 122222221 57899999999998632 1111 111 0100
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++|. +++|++.|.+.+
T Consensus 68 ------------------------------~~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 68 ------------------------------SEGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred ------------------------------hCCCcEEEEEccccccHHHHHHHHHHHH
Confidence 112368999999998 999999998765
No 329
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.88 E-value=5.5e-09 Score=87.80 Aligned_cols=185 Identities=16% Similarity=0.222 Sum_probs=105.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccccc------------------ceeeccccceEEeeccc-----------cc--
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT------------------VTSMEPNEDTFVLHSES-----------TK-- 112 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~-----------~~-- 112 (268)
+.+|+++|..++|||||+.-|+++....+. ..++.-.+-.|.....+ .|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 578999999999999999888766542111 11111111001111000 00
Q ss_pred --CCceeeEEEEeCCCCCCchhhHhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 113 --KGKIKPVHLVDVPGHSRLRPKLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 113 --~~~~~~~~i~DtpG~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
.+...-++++|.+||++|-......+ ...|..++++-++.+. +....+.+.-.+. -.+|+.+|++|+|
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI--iGmTKEHLgLALa------L~VPVfvVVTKID 284 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI--IGMTKEHLGLALA------LHVPVFVVVTKID 284 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc--eeccHHhhhhhhh------hcCcEEEEEEeec
Confidence 01113578999999998865543333 4468889999888762 3333444444443 6899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHH
Q 024385 189 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 262 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l 262 (268)
++++...++-.+.+.+.+....+..-.+-....++..... .. |.. ..-+++|.+|-.+|+ ++-|..+|
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A---~N--F~S-er~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAA---VN--FPS-ERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEee---cc--Ccc-ccccceEEeccccCCChHHHHHHH
Confidence 9987666555555554444322222222221212211111 11 221 455899999999998 66555444
No 330
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.87 E-value=1.2e-07 Score=78.42 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=56.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeecccc--ceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNE--DTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
+...+|+++|+.++|||||+.+|-+.+- ..+.. +-...+..-...+...++.+|-.-|......++...+.
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~-------~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ 122 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSET-------VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALP 122 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccc-------cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccc
Confidence 4678999999999999999999987542 11111 11111211112222346777777786655555555554
Q ss_pred CC---C-EEEEEEeCCCCCCCHHHHHHH
Q 024385 140 QA---A-GIVFVVDALEFLPNCSAASEY 163 (268)
Q Consensus 140 ~~---d-~ii~v~d~~~~~~~~~~~~~~ 163 (268)
.. + .+|+++|.+++-.-++.+..|
T Consensus 123 ats~aetlviltasms~Pw~~lesLqkW 150 (473)
T KOG3905|consen 123 ATSLAETLVILTASMSNPWTLLESLQKW 150 (473)
T ss_pred ccCccceEEEEEEecCCcHHHHHHHHHH
Confidence 33 3 578889998872223444444
No 331
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.87 E-value=1.1e-08 Score=74.69 Aligned_cols=91 Identities=12% Similarity=0.018 Sum_probs=62.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+|++++|..|+|||+|+.++....+..... + ++.+ +......+.+.++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~--~-~t~~---------------------------~~~~~~~~~~s~~~~ 50 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPT--V-FTIG---------------------------IDVYDPTSYESFDVV 50 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCc--e-ehhh---------------------------hhhccccccCCCCEE
Confidence 489999999999999999997776632111 0 1111 222334566778999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.|++.... +++... |...+.... +.+.|.++++||.|+..
T Consensus 51 ~~v~~~~~~-~s~~~~--~~~~i~~~~---k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 51 LQCWRVDDR-DSADNK--NVPEVLVGN---KSDLPILVGGNRDVLEE 91 (124)
T ss_pred EEEEEccCH-HHHHHH--hHHHHHhcC---CCCCcEEEEeechhhHh
Confidence 999999986 556544 655555432 26789999999999843
No 332
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.82 E-value=4.5e-09 Score=84.98 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=69.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC----------Cch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS----------RLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~----------~~~ 131 (268)
.+.+.++++|.+|+|||||+|.++..+.......+ .++-+.. ++ .... | -.+.++|.||.. ++.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~-K~g~Tq~-in-~f~v-~--~~~~~vDlPG~~~a~y~~~~~~d~~ 207 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS-KNGKTQA-IN-HFHV-G--KSWYEVDLPGYGRAGYGFELPADWD 207 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC-CCcccee-ee-eeec-c--ceEEEEecCCcccccCCccCcchHh
Confidence 45689999999999999999999877643222111 1111111 11 1111 2 378999999932 233
Q ss_pred hhHhhhccC---CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 132 PKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 132 ~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
.....|+-+ --.+.+.+|++-+. ...+....+++.+ .++|+.+|+||||....
T Consensus 208 ~~t~~Y~leR~nLv~~FLLvd~sv~i---~~~D~~~i~~~ge-----~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 208 KFTKSYLLERENLVRVFLLVDASVPI---QPTDNPEIAWLGE-----NNVPMTSVFTKCDKQKK 263 (320)
T ss_pred HhHHHHHHhhhhhheeeeeeeccCCC---CCCChHHHHHHhh-----cCCCeEEeeehhhhhhh
Confidence 334455532 22456677887652 2232222333332 79999999999997643
No 333
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.82 E-value=1.3e-07 Score=84.13 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=53.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.....|+|+|..++|||||+.+|.+..-. ..+..-+.+...+.. -..+ ...++.+|-..|...+..++.-.+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~---~~~~aLeYty~~v~d-~~~d-d~~rl~vw~L~g~~~~~~LLk~~lt~~ 97 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIEDP---KKGLALEYTYLDVKD-EDRD-DLARLNVWELDGDPSHSDLLKFALTPE 97 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCCC---CCCcccceEEEeecc-CcCC-cCceeeEEEcCCCcchHhHhcccCCcc
Confidence 45689999999999999999998764321 111111111111111 1111 224688898888666666665545432
Q ss_pred ----CEEEEEEeCCCC
Q 024385 142 ----AGIVFVVDALEF 153 (268)
Q Consensus 142 ----d~ii~v~d~~~~ 153 (268)
-++|+|+|.+.+
T Consensus 98 ~l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 98 NLPNTLVVIVLDLSKP 113 (472)
T ss_pred cccceEEEEEecCCCh
Confidence 268899999997
No 334
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.81 E-value=1.5e-08 Score=80.14 Aligned_cols=101 Identities=21% Similarity=0.171 Sum_probs=62.8
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
++..+..+++.+|++++|+|+++...+.. ..+ ... ..+.|+++|+||+|+..........+.+.+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~---~~l---~~~----~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-- 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLI---PRL---RLF----GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA-- 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccc---hhH---HHh----cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH--
Confidence 57888899999999999999988622211 111 111 157899999999999754322211111110000
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.... . .....++++||++|+ +++|+++|.+.++
T Consensus 92 -~~~~-----------------------~-~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 92 -AAGL-----------------------G-LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred -Hhhc-----------------------C-CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 0000 0 001257899999999 9999999988763
No 335
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.3e-08 Score=86.91 Aligned_cols=145 Identities=17% Similarity=0.272 Sum_probs=94.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc------------cccc------ceeeccccceEEeecc--------cccCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST------------HQGT------VTSMEPNEDTFVLHSE--------STKKGK 115 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~------------~~~~------~~~~~~~~~~~~~~~~--------~~~~~~ 115 (268)
++.+++.++.+.+.|||||...|....- .++. -.++..+.....+... ..-++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 5667899999999999999999864321 0000 0011111100000000 122344
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC---CC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV---TA 192 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~---~~ 192 (268)
.+.++++|.|||.+|.+..-..++-.|+.++|+|+-++ -+-+....+.+.+. ..+.-+++.||+|.. -.
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~G--vCVQTETVLrQA~~------ERIkPvlv~NK~DRAlLELq 168 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG--VCVQTETVLRQAIA------ERIKPVLVMNKMDRALLELQ 168 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCc--eEechHHHHHHHHH------hhccceEEeehhhHHHHhhc
Confidence 57899999999999999999999999999999999887 23444455555554 455567889999953 23
Q ss_pred CCHHHHHHHHHHHHHHHHHhhh
Q 024385 193 HTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.+.+++.+.+.+..+.++...+
T Consensus 169 ~~~EeLyqtf~R~VE~vNviis 190 (842)
T KOG0469|consen 169 LSQEELYQTFQRIVENVNVIIS 190 (842)
T ss_pred CCHHHHHHHHHHHHhcccEEEE
Confidence 4667777777776665544444
No 336
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.1e-08 Score=90.77 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccc-------ccceee-----ccccceEEe--ecccccCCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-------GTVTSM-----EPNEDTFVL--HSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~-------~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
+.++|.+.-+-.+||||+-.+.+.-.-.. +..+.+ +.+.+.... -....+.+ ++++++|||||.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~--~~iNiIDTPGHv 115 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD--YRINIIDTPGHV 115 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc--ceeEEecCCCce
Confidence 56789999999999999999864321100 000000 001111111 11123343 799999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
+|.-...+.++-.|++|+|+|+..+-+ .+....+.++.+ .++|.+.++||+|...+....
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVq--sQt~tV~rQ~~r------y~vP~i~FiNKmDRmGa~~~~ 175 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVE--SQTETVWRQMKR------YNVPRICFINKMDRMGASPFR 175 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEccccee--hhhHHHHHHHHh------cCCCeEEEEehhhhcCCChHH
Confidence 999999999999999999999988722 233333444443 689999999999998765443
No 337
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.74 E-value=4.2e-08 Score=75.13 Aligned_cols=89 Identities=17% Similarity=0.119 Sum_probs=55.0
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
..+..+|++++|+|+.++..+ ....+...+... ..+.|+++|+||+|+.+. ++.. ..+..+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~---~~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~---~~~~----~~~~~~------ 64 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT---RCKHVEEYLKKE---KPHKHLIFVLNKCDLVPT---WVTA----RWVKIL------ 64 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc---cCHHHHHHHHhc---cCCCCEEEEEEchhcCCH---HHHH----HHHHHH------
Confidence 456789999999999986221 122333333221 146899999999999642 2221 112211
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.... ....+++||++|. +++|.++|.++
T Consensus 65 ---------------------~~~~-~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 65 ---------------------SKEY-PTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred ---------------------hcCC-cEEEEEeeccccccHHHHHHHHHHH
Confidence 1101 1235789999988 99999988765
No 338
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.72 E-value=3.9e-08 Score=86.44 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=59.3
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
..+.++|++|+..-+..|..++..+++||||++.++.. ..+.+....+..+...... .+.|++|++||.
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~--~~~~iil~lnK~ 313 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF--KNTPIILFLNKI 313 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG--TTSEEEEEEE-H
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc--ccCceEEeeecH
Confidence 57899999999988999999999999999999986431 2366777788888876544 689999999999
Q ss_pred CCC
Q 024385 188 DKV 190 (268)
Q Consensus 188 Dl~ 190 (268)
|+.
T Consensus 314 D~f 316 (389)
T PF00503_consen 314 DLF 316 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 339
>PRK12289 GTPase RsgA; Reviewed
Probab=98.71 E-value=6.1e-08 Score=83.40 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=61.5
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
....+.++|.+++|+|+.++.-....+..++..... .++|+++|+||+||... ++.. .+...+.
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~------~~ip~ILVlNK~DLv~~---~~~~-~~~~~~~------ 146 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES------TGLEIVLCLNKADLVSP---TEQQ-QWQDRLQ------ 146 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEEchhcCCh---HHHH-HHHHHHH------
Confidence 345678999999999998762244566777765532 68999999999999743 2111 1111111
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..++.++++||++|+ +++|.++|...
T Consensus 147 --------------------------~~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 147 --------------------------QWGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred --------------------------hcCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 112468899999998 99999888653
No 340
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=6e-09 Score=88.58 Aligned_cols=122 Identities=25% Similarity=0.269 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--------Cccccc-c---eeeccccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--------STHQGT-V---TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--------~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
+.++|.++.+.++||||...|++.- ....+. + ..++.+.+.......+.++-+.++++++|||||.+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 4568999999999999999887531 111111 1 112222333333333444444489999999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
+-...+.++-.|+++.|+|++.+. .-+.+.-|- +. .+.++|-+.++||+|...+
T Consensus 116 ~leverclrvldgavav~dasagv-e~qtltvwr-qa------dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGV-EAQTLTVWR-QA------DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCc-ccceeeeeh-hc------cccCCchhhhhhhhhhhhh
Confidence 999999999999999999999872 223333332 11 1378999999999998754
No 341
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.68 E-value=3e-08 Score=77.09 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=61.2
Q ss_pred CCCCC-CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHH
Q 024385 124 VPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 202 (268)
Q Consensus 124 tpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l 202 (268)
.|||. +........++.+|.+++|+|++++..... ..+...+ .+.|+++|+||+|+... +...+.+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~---~~i~~~~-------~~k~~ilVlNK~Dl~~~---~~~~~~~ 68 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN---PLLEKIL-------GNKPRIIVLNKADLADP---KKTKKWL 68 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC---hhhHhHh-------cCCCEEEEEehhhcCCh---HHHHHHH
Confidence 56654 344556778899999999999987622211 1111111 45799999999999632 1111111
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.++. ....++.+||++|+ +++|.+.|.+.+
T Consensus 69 -~~~~~--------------------------------~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 69 -KYFES--------------------------------KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred -HHHHh--------------------------------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 11110 01257889999998 999999988764
No 342
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.6e-08 Score=81.58 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=81.3
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
..+.++|+|||+-....+.....-.|++++++.+++.. ...+..+.+..+-.. .-..++++-||+|+..+....
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC-PQPQTsEHLaaveiM-----~LkhiiilQNKiDli~e~~A~ 198 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC-PQPQTSEHLAAVEIM-----KLKHIIILQNKIDLIKESQAL 198 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC-CCCchhhHHHHHHHh-----hhceEEEEechhhhhhHHHHH
Confidence 46789999999887777666666678899999888752 233344444443322 345789999999999876665
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+..+++.+.++.- .-.+.+++++||--+. |+.+.++|.+++|
T Consensus 199 eq~e~I~kFi~~t-----------------------------~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 199 EQHEQIQKFIQGT-----------------------------VAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHHHHhcc-----------------------------ccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 5555555433310 1234589999998876 9999999999876
No 343
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.66 E-value=1.9e-07 Score=82.79 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=80.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++-..+.++|+.++|||.+++.+.++.+......+..+... .+. +...|+...+.+-|.+-. ........- ..|
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~a---vn~-v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYA---VNS-VEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCcee---eee-eeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 44578999999999999999999998886644444444322 222 112244456666666543 212221122 679
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
|+++++||++++ .++.........-... ...|+++|+.|+|+...
T Consensus 497 Dv~~~~YDsS~p-~sf~~~a~v~~~~~~~-----~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 497 DVACLVYDSSNP-RSFEYLAEVYNKYFDL-----YKIPCLMVATKADLDEV 541 (625)
T ss_pred eeEEEecccCCc-hHHHHHHHHHHHhhhc-----cCCceEEEeeccccchh
Confidence 999999999987 7777776655444332 68999999999999654
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.66 E-value=6.3e-08 Score=74.18 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
...+++++|.+|+|||||+|+|.+.... ..+..+++++... .+...+ .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~---~~~~~~g~T~~~~--~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVC---KVAPIPGETKVWQ--YITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCce---eeCCCCCeeEeEE--EEEcCC---CEEEEECcCC
Confidence 4678999999999999999999986541 1122222222211 111122 4789999994
No 345
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=4.1e-07 Score=80.41 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=72.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.+-++++||||+|||||+..|...-. -.++..-.+..++. .|+..++++..+|. + -+.+......+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTvv-----sgK~RRiTflEcp~--D-l~~miDvaKIa 134 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITVV-----SGKTRRITFLECPS--D-LHQMIDVAKIA 134 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEEe-----ecceeEEEEEeChH--H-HHHHHhHHHhh
Confidence 4456677999999999999999876421 11222222223222 35557899999993 3 33444566779
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
|.+++.+|.+-+ |+--...+..++... ....++-|++..|+....
T Consensus 135 DLVlLlIdgnfG---fEMETmEFLnil~~H----GmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 135 DLVLLLIDGNFG---FEMETMEFLNILISH----GMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred heeEEEeccccC---ceehHHHHHHHHhhc----CCCceEEEEeecccccCh
Confidence 999999999987 433333334444431 334477899999998643
No 346
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.4e-06 Score=78.71 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=80.0
Q ss_pred HhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccce-------eeccccceEEe---------------e---------
Q 024385 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT-------SMEPNEDTFVL---------------H--------- 107 (268)
Q Consensus 59 ~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~-------~~~~~~~~~~~---------------~--------- 107 (268)
...+...||+|.|..++||||++|+++.++.-.+... .+....|...+ +
T Consensus 104 ~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 104 VLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred HHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 3346788999999999999999999876654111100 00000000000 0
Q ss_pred c--------ccccCCce-----eeEEEEeCCCCCC---chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 024385 108 S--------ESTKKGKI-----KPVHLVDVPGHSR---LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNS 171 (268)
Q Consensus 108 ~--------~~~~~~~~-----~~~~i~DtpG~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~ 171 (268)
. .+.+.+.. -.+.++|.||.+- ..+....+...+|++|||+.+.+. -.....+++....+
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~-- 259 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE-- 259 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc--
Confidence 0 00111110 1467899999764 344466788899999999999885 23334445544433
Q ss_pred CccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 172 TVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 172 ~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
....|.|+.||.|.... ..+..+.+.+++.
T Consensus 260 ----~KpniFIlnnkwDasas--e~ec~e~V~~Qi~ 289 (749)
T KOG0448|consen 260 ----EKPNIFILNNKWDASAS--EPECKEDVLKQIH 289 (749)
T ss_pred ----cCCcEEEEechhhhhcc--cHHHHHHHHHHHH
Confidence 34456778889998643 2334444444333
No 347
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.61 E-value=9.8e-08 Score=74.05 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
...+++++|.||+|||||+|++.+.... ..+..|++++.... +..+ ..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~---~~~~~pg~T~~~~~--~~~~---~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRAC---NVGATPGVTKSMQE--VHLD---KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccc---eecCCCCeEcceEE--EEeC---CCEEEEECcCC
Confidence 3479999999999999999999986541 11222333222111 1122 25799999994
No 348
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.60 E-value=8.6e-08 Score=72.05 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=37.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
..+++++|.+|+|||||+|++.+..... .+..+..+.... .+..++ .+.+|||||..
T Consensus 83 ~~~~~~~G~~~vGKstlin~l~~~~~~~---~~~~~~~~~~~~--~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALVGKKKVS---VSATPGKTKHFQ--TIFLTP---TITLCDCPGLV 139 (141)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcee---eCCCCCcccceE--EEEeCC---CEEEEECCCcC
Confidence 3489999999999999999999876531 122222222221 122233 57999999964
No 349
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.56 E-value=3.2e-07 Score=77.21 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=61.2
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
..+.++|.+++|+|+.++.-++..+..|+..+.. .++|+++|+||+|+... .+. ...... ..
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~------~~ip~iIVlNK~DL~~~--~~~-~~~~~~-~~-------- 135 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA------AGIEPVIVLTKADLLDD--EEE-ELELVE-AL-------- 135 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH------cCCCEEEEEEHHHCCCh--HHH-HHHHHH-HH--------
Confidence 3478899999999999873267777887765543 57899999999999753 111 110000 00
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
...++++++||++|. +++|.++|..
T Consensus 136 ------------------------~~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 136 ------------------------ALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred ------------------------hCCCeEEEEECCCCccHHHHHhhhcc
Confidence 123478999999998 9999888764
No 350
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.55 E-value=2.9e-07 Score=76.67 Aligned_cols=92 Identities=21% Similarity=0.283 Sum_probs=66.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeeccc--------ccC-CceeeEEEEeCCCCCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES--------TKK-GKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~i~DtpG~~~~ 130 (268)
....++.|||.||+|||||+|.|+....... ...|++|+.++...+.+. ... -....++++|++|...-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4567999999999999999999998765332 356888887766554331 111 11246899999996543
Q ss_pred -------hhhHhhhccCCCEEEEEEeCCCC
Q 024385 131 -------RPKLDEFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 131 -------~~~~~~~~~~~d~ii~v~d~~~~ 153 (268)
.....+.++.+|+++-|+++.+.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecCc
Confidence 33355678899999999998654
No 351
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.55 E-value=1.1e-07 Score=79.64 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=61.6
Q ss_pred CCCCCC-chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHH
Q 024385 124 VPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 202 (268)
Q Consensus 124 tpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l 202 (268)
.|||.. ........++.+|++++|+|+..+..+.. ..+...+ .+.|+++|+||+|+.+. ....+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~---~~i~~~l-------~~kp~IiVlNK~DL~~~---~~~~~~~ 70 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN---PMIDEIR-------GNKPRLIVLNKADLADP---AVTKQWL 70 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC---hhHHHHH-------CCCCEEEEEEccccCCH---HHHHHHH
Confidence 577653 34456778899999999999987632221 2222222 36799999999999642 1111111
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.++. ...+++.+||++|. +++|.+.|.+.+
T Consensus 71 -~~~~~--------------------------------~~~~vi~iSa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 71 -KYFEE--------------------------------KGIKALAINAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred -HHHHH--------------------------------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 11110 11357889999998 999988887654
No 352
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.54 E-value=5.7e-07 Score=68.91 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=39.9
Q ss_pred eeEEEEeCCCCCCchhhHhhh--------ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEF--------LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
....++||||..+........ .-..|.+++++|+......+... ..+...+..+. +|++||+|
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~-~~~~~Qi~~ad--------~ivlnk~d 157 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ-TEAQSQIAFAD--------RILLNKTD 157 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc-HHHHHHHHHCC--------EEEEeccc
Confidence 567899999987655554432 23478999999998752212221 22333333322 67899999
Q ss_pred C
Q 024385 189 K 189 (268)
Q Consensus 189 l 189 (268)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 6
No 353
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.53 E-value=4.4e-07 Score=77.95 Aligned_cols=88 Identities=20% Similarity=0.228 Sum_probs=62.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCc-ccc--cceeeccccceEEeeccc--------ccC-CceeeEEEEeCCCCCC---
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGST-HQG--TVTSMEPNEDTFVLHSES--------TKK-GKIKPVHLVDVPGHSR--- 129 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~i~DtpG~~~--- 129 (268)
.++.++|.||+|||||+|.|++... ... ..+|+.|..+...++... ... -....+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999998765 222 345567777766654321 000 0113689999999754
Q ss_pred ----chhhHhhhccCCCEEEEEEeCCC
Q 024385 130 ----LRPKLDEFLPQAAGIVFVVDALE 152 (268)
Q Consensus 130 ----~~~~~~~~~~~~d~ii~v~d~~~ 152 (268)
........++.+|+++.|+|+.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 23345667899999999999964
No 354
>PRK00098 GTPase RsgA; Reviewed
Probab=98.53 E-value=4.8e-07 Score=76.56 Aligned_cols=86 Identities=20% Similarity=0.141 Sum_probs=57.4
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
..++|++++|+|+.++......+..|+..+.. .++|+++|+||+|+... .+...+ .....+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~------~~ip~iIVlNK~DL~~~--~~~~~~-~~~~~~---------- 138 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA------NGIKPIIVLNKIDLLDD--LEEARE-LLALYR---------- 138 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEEhHHcCCC--HHHHHH-HHHHHH----------
Confidence 58899999999998762333444666655433 68899999999999632 221111 111111
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
...++++++||++|+ +++|++++..
T Consensus 139 ----------------------~~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 139 ----------------------AIGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred ----------------------HCCCeEEEEeCCCCccHHHHHhhccC
Confidence 112478999999998 9999988754
No 355
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.53 E-value=1.6e-07 Score=74.24 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccc-----cceeeccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQG-----TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
...+++++|.+|+|||||+|.|.+...... ...+..|++++..... .... .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKI--PLGN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEE--ecCC---CCEEEeCcCC
Confidence 557899999999999999999997653211 1222333333333222 2222 4699999994
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.52 E-value=3.9e-07 Score=69.63 Aligned_cols=81 Identities=23% Similarity=0.238 Sum_probs=50.6
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHH-HHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLY-DILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++++|+|+.++..+. ..++. ..+.. .++|+++|+||+|+... ++..+.+.. +..
T Consensus 1 Dvvl~VvD~~~p~~~~---~~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~---~~~~~~~~~-~~~------------ 56 (155)
T cd01849 1 DVILEVLDARDPLGTR---SPDIERVLIKE-----KGKKLILVLNKADLVPK---EVLRKWLAY-LRH------------ 56 (155)
T ss_pred CEEEEEEeccCCcccc---CHHHHHHHHhc-----CCCCEEEEEechhcCCH---HHHHHHHHH-HHh------------
Confidence 7899999998862222 22333 22221 67899999999999643 222221111 111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.....++.+||++|. +++|.+.|.+.
T Consensus 57 -------------------~~~~~ii~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 57 -------------------SYPTIPFKISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred -------------------hCCceEEEEeccCCcChhhHHHHHHHH
Confidence 112367889999998 99999988653
No 357
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.52 E-value=1.3e-06 Score=70.75 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--Ccccccceeecc-ccceEEeecccccCCceeeEEEEeCCCCCCchhh------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEP-NEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------ 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------ 133 (268)
+...|.++|++++|||+|+|+|.+. .|.... +..+ +.+.+....... .+....+.++||||..+....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~--~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMD--TSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecC--CCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhh
Confidence 4457899999999999999999998 663221 1122 223333322211 123368999999997654221
Q ss_pred Hhhhcc--CCCEEEEEEeCCCC
Q 024385 134 LDEFLP--QAAGIVFVVDALEF 153 (268)
Q Consensus 134 ~~~~~~--~~d~ii~v~d~~~~ 153 (268)
....+. -++++||..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 122223 38899999888765
No 358
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.50 E-value=6.5e-07 Score=71.67 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------Hh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-------LD 135 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~~ 135 (268)
..-+|+++|.|.+|||||+..++.... ...+++.++ -.-++..+.++| ..+++.|.||..+-.++ ..
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~S---eaA~yeFTT-LtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQvi 134 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHS---EAASYEFTT-LTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVI 134 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchh---hhhceeeeE-EEeecceEEecC--ceEEEecCcccccccccCCCCCceEE
Confidence 456899999999999999999987543 222333222 123445566666 58999999997643322 23
Q ss_pred hhccCCCEEEEEEeCCCC
Q 024385 136 EFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~ 153 (268)
...+.+|.+++|.|++..
T Consensus 135 avArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKS 152 (364)
T ss_pred EEeecccEEEEEecCCcc
Confidence 456789999999999987
No 359
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=8.4e-07 Score=71.99 Aligned_cols=139 Identities=15% Similarity=0.206 Sum_probs=91.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------hh-
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-------RP- 132 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~- 132 (268)
..-.++|+.+|.+|-|||||+..|.+-+|.....+..-|+..--....++.-.+....++++||.|..+. ..
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 3557899999999999999999999988855444334444433333444555666678999999996532 11
Q ss_pred ------hHhhhc---------------cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 133 ------KLDEFL---------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 133 ------~~~~~~---------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+...|+ ...++++|.+.++.. ++..++-.-..-+. ..+.||-++-|.|...
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH--~LKslDLvtmk~Ld------skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH--SLKSLDLVTMKKLD------SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc--chhHHHHHHHHHHh------hhhhhHHHHHHhhhhh
Confidence 122222 246789999999885 56666544433333 5677888889999876
Q ss_pred CCCHHHHHHHHHHHHH
Q 024385 192 AHTKEFIRKQMEKEID 207 (268)
Q Consensus 192 ~~~~~~~~~~l~~~l~ 207 (268)
..........+..++.
T Consensus 191 K~eL~~FK~kimsEL~ 206 (406)
T KOG3859|consen 191 KEELKRFKIKIMSELV 206 (406)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5544444444444443
No 360
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.49 E-value=3.4e-07 Score=68.78 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=35.6
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCH-HHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
....+..+|++++|+|+.++.... ..+.+++... . .++|+++|+||+|+..
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~---~~k~~iivlNK~DL~~ 56 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D---PRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c---CCCcEEEEEechhcCC
Confidence 456788999999999998873222 1333333321 1 4789999999999964
No 361
>PRK12288 GTPase RsgA; Reviewed
Probab=98.48 E-value=1.1e-06 Score=75.61 Aligned_cols=88 Identities=24% Similarity=0.261 Sum_probs=61.5
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
..++|.+++|++.... .++..+..|+..... .++|+++|+||+|+..........+.+. ..+
T Consensus 118 aANvD~vlIV~s~~p~-~s~~~Ldr~L~~a~~------~~i~~VIVlNK~DL~~~~~~~~~~~~~~-~y~---------- 179 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-LSLNIIDRYLVACET------LGIEPLIVLNKIDLLDDEGRAFVNEQLD-IYR---------- 179 (347)
T ss_pred EEEccEEEEEEeCCCC-CCHHHHHHHHHHHHh------cCCCEEEEEECccCCCcHHHHHHHHHHH-HHH----------
Confidence 3568999999998765 678888888774432 6789999999999975432222221111 111
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
...++++++||++|+ +++|+++|...
T Consensus 180 ----------------------~~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 180 ----------------------NIGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred ----------------------hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 112478999999998 99999998754
No 362
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.48 E-value=5e-07 Score=78.47 Aligned_cols=100 Identities=25% Similarity=0.303 Sum_probs=65.2
Q ss_pred CCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHH
Q 024385 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKE 205 (268)
Q Consensus 127 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~ 205 (268)
.++|......+.+.++++++|+|+.+...+. ...+.+.. .+.|+++|+||+|+.+.. ..+.+.+.+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~-------~~~piilV~NK~DLl~k~~~~~~~~~~l~~~ 119 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFV-------GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR 119 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHh-------CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH
Confidence 4467777888889999999999998863222 22222222 467999999999997543 333333333322
Q ss_pred HHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 206 IDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.+.. + .....++++||++|. ++++++.|.++
T Consensus 120 ~k~~------------------g-----------~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 120 AKEL------------------G-----------LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHc------------------C-----------CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2210 0 001147889999998 99999998764
No 363
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.48 E-value=7e-08 Score=73.32 Aligned_cols=26 Identities=42% Similarity=0.495 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+...++++|++|||||||+|.|....
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34789999999999999999999874
No 364
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.43 E-value=2.1e-07 Score=80.82 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=70.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccccc--ceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhc---
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFL--- 138 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~--- 138 (268)
..+++++|.+|||||||+|+|.+....... ..+..|.++..... +..++ .+.++||||..... .+..++
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~~~~---~~~l~DtPG~~~~~-~~~~~l~~~ 227 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IPLDD---GHSLYDTPGIINSH-QMAHYLDKK 227 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EEeCC---CCEEEECCCCCChh-HhhhhcCHH
Confidence 579999999999999999999875421111 12223333322222 22222 35799999976432 222222
Q ss_pred --------cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHH
Q 024385 139 --------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205 (268)
Q Consensus 139 --------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~ 205 (268)
+......+.+|.... -.+.. ..++. ++. .....+.++++|.+.......+...+.+++.
T Consensus 228 ~l~~~~~~~~i~~~~~~l~~~q~-~~~gg-l~~~d-~~~-----~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~ 294 (360)
T TIGR03597 228 DLKYITPKKEIKPKTYQLNPNQT-LFLGG-LARFD-YLK-----GEKTSFTFYVSNELNIHRTKLENADELYNKH 294 (360)
T ss_pred HHhhcCCCCccCceEEEeCCCCE-EEEce-EEEEE-Eec-----CCceEEEEEccCCceeEeechhhhHHHHHhh
Confidence 234567777776553 11111 11111 111 1456678888888877655555555554443
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.43 E-value=5.6e-07 Score=69.93 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=36.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
....+++++|.+|+|||||+|++.+..+.. .+..+.++..... ...+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~---~~~~~~~T~~~~~--~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK---VGNKPGVTKGIQW--IKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcee---ecCCCCEEeeeEE--EEec---CCEEEEECCCC
Confidence 345789999999999999999999876521 1111111111111 1112 25789999995
No 366
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=8.6e-07 Score=75.43 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=73.1
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC--CCHHH---HHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PNCSA---ASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~~~---~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
.++++.|+|||..|-..+.....++|..++|+++..++ ..|+. ..+.. .+... ..-...|+++||+|-..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha-~Lakt----~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA-MLAKT----AGVKHLIVLINKMDDPT 231 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHH-HHHHh----hccceEEEEEEeccCCc
Confidence 47899999999999999888999999999999995431 11211 11111 11111 14567899999999877
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHH
Q 024385 192 AHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVE 259 (268)
Q Consensus 192 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~ 259 (268)
.+-..+..+.+...+..+-. ... |.. .....|++||+.+|. +.+..
T Consensus 232 vnWs~eRy~E~~~k~~~fLr-~~g--------------------~n~-~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLR-KLG--------------------FNP-KPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cCcchhhHHHHHHHHHHHHH-Hhc--------------------ccC-CCCceeeecccccccchhhcc
Confidence 65444444444444443311 110 011 345689999999997 66543
No 367
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.41 E-value=3e-07 Score=77.48 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=62.3
Q ss_pred EeCCCCCC-chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHH
Q 024385 122 VDVPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK 200 (268)
Q Consensus 122 ~DtpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 200 (268)
--.|||.. ........+..+|++++|+|+..+..+. ..++.... .+.|+++|+||+|+.+. .....
T Consensus 5 ~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~---~~~l~~~~-------~~kp~iiVlNK~DL~~~---~~~~~ 71 (287)
T PRK09563 5 QWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSE---NPMIDKII-------GNKPRLLILNKSDLADP---EVTKK 71 (287)
T ss_pred cCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCC---ChhHHHHh-------CCCCEEEEEEchhcCCH---HHHHH
Confidence 35688753 2344667889999999999998763221 12233332 36799999999999642 11111
Q ss_pred HHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 201 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+ +.++ ....+++.+||+++. +++|.+.|.+.+
T Consensus 72 ~~-~~~~--------------------------------~~~~~vi~vSa~~~~gi~~L~~~l~~~l 105 (287)
T PRK09563 72 WI-EYFE--------------------------------EQGIKALAINAKKGQGVKKILKAAKKLL 105 (287)
T ss_pred HH-HHHH--------------------------------HcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 11 1111 011357889999998 888888776653
No 368
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.41 E-value=7.9e-07 Score=71.47 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=56.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hhHhhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PKLDEF 137 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~~~~~ 137 (268)
-+|.++|-|.+||||++..+++-.. .+++... ++-..++....+.+ -.+++.|.||..+-. .+....
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s---~vasyef-ttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviav 133 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEF-TTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAV 133 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC---ccccccc-eeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEE
Confidence 4899999999999999999987543 2333322 12233344444555 589999999965421 223345
Q ss_pred ccCCCEEEEEEeCCCC
Q 024385 138 LPQAAGIVFVVDALEF 153 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~ 153 (268)
.+.|+.+++|.|+..+
T Consensus 134 artcnli~~vld~~kp 149 (358)
T KOG1487|consen 134 ARTCNLIFIVLDVLKP 149 (358)
T ss_pred eecccEEEEEeeccCc
Confidence 6789999999999876
No 369
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.41 E-value=5.7e-07 Score=75.33 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=37.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
...+++++|.+|+|||||+|+|.+..... ++..|++++... .+...+ .+.++||||..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~---~~~~~g~T~~~~--~~~~~~---~~~l~DtPG~~ 174 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAK---VGNRPGVTKGQQ--WIKLSD---GLELLDTPGIL 174 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc---cCCCCCeecceE--EEEeCC---CEEEEECCCcc
Confidence 46789999999999999999999865421 111222222211 122222 57999999973
No 370
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.40 E-value=5.4e-07 Score=75.92 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
...+++++|.+|+|||||+|+|.+.+... .+..|+++.... .+..++ .+.++||||...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~---~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi~~ 178 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK---TGNRPGVTKAQQ--WIKLGK---GLELLDTPGILW 178 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc---cCCCCCeEEEEE--EEEeCC---cEEEEECCCcCC
Confidence 45789999999999999999999876411 112222222211 122222 578999999754
No 371
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.40 E-value=6.6e-07 Score=68.32 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=37.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
....+++++|.+|+|||||+|.+.+..... .+..+.+++..... ... ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~---~~~~~~~t~~~~~~--~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK---VGNVPGTTTSQQEV--KLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc---ccCCCCcccceEEE--Eec---CCEEEEECCCC
Confidence 457889999999999999999999865311 11122222222211 111 25799999994
No 372
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.35 E-value=8e-07 Score=75.89 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
...+++++|-||+|||||||+|.+... ..++-.|+.+.-. ..+.... .+.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~---~~~s~~PG~Tk~~--q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKV---AKTSNRPGTTKGI--QWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccc---eeeCCCCceecce--EEEEcCC---CeEEecCCCcC
Confidence 457899999999999999999999875 2222233222111 1122222 47999999964
No 373
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.34 E-value=1.3e-05 Score=68.11 Aligned_cols=69 Identities=33% Similarity=0.436 Sum_probs=48.3
Q ss_pred eeEEEEeCCCCCCchhhHhhhcc--------CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
....++.|.|..+..+....+.. ..|++|-|+|+....+......+...+.+..+. +|++||+|
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD--------~ivlNK~D 156 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD--------VIVLNKTD 156 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc--------EEEEeccc
Confidence 56678999998887666655543 257899999999873323334455555555443 78999999
Q ss_pred CCCCC
Q 024385 189 KVTAH 193 (268)
Q Consensus 189 l~~~~ 193 (268)
+.++.
T Consensus 157 lv~~~ 161 (323)
T COG0523 157 LVDAE 161 (323)
T ss_pred CCCHH
Confidence 98765
No 374
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.33 E-value=2.9e-06 Score=72.28 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=39.1
Q ss_pred eeEEEEeCCCCCCchhh----Hhhhc--------cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEe
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEFL--------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~~--------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~ 184 (268)
+.+.++||||....... ..... ...+..++|+|++.+.+.+... ..... .-.+--+++
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~------~~~~~giIl 266 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHE------AVGLTGIIL 266 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHh------hCCCCEEEE
Confidence 68999999997643222 22221 2467889999999873333322 22221 122457899
Q ss_pred ecCCCCC
Q 024385 185 NKTDKVT 191 (268)
Q Consensus 185 nK~Dl~~ 191 (268)
||.|...
T Consensus 267 TKlD~t~ 273 (318)
T PRK10416 267 TKLDGTA 273 (318)
T ss_pred ECCCCCC
Confidence 9999653
No 375
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.33 E-value=1.9e-05 Score=69.41 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=38.3
Q ss_pred eeEEEEeCCCCCCchhhHh----hh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLD----EF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.|+||||......... .+ ....+.+++|+|++.+ .........+.+ .-.+--+++||.|-.
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G-q~a~~~a~~F~~---------~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG-QAAEAQAKAFKD---------SVDVGSVIITKLDGH 252 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC-hhHHHHHHHHHh---------ccCCcEEEEECccCC
Confidence 6889999999765432222 22 2346789999999877 322222232221 122455677888764
Q ss_pred C
Q 024385 191 T 191 (268)
Q Consensus 191 ~ 191 (268)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
No 376
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.32 E-value=1.5e-06 Score=66.34 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
....+++++|.+|+|||||+|++.++.
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999999754
No 377
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.31 E-value=1.1e-06 Score=77.49 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=85.7
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.-++.|+.|+|..++|||+|+.+++.+.+ .+...|+.+++. .++..+++...+.+.|-+|+.+ ..|...
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty----~~~e~~e~~~~k--kE~vv~gqs~lLlirdeg~~~~-----aQft~w 95 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTY----TQDESPEGGRFK--KEVVVDGQSHLLLIRDEGGHPD-----AQFCQW 95 (749)
T ss_pred ccchhheeeeecccCCceeeeeeecccee----ccccCCcCccce--eeEEeeccceEeeeecccCCch-----hhhhhh
Confidence 35688999999999999999999998876 334455555554 4455677777888999888543 567788
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
.|++||||...+. .+++.+......+-.+.. ...+|+++++++-
T Consensus 96 vdavIfvf~~~d~-~s~q~v~~l~~~l~~~r~--r~~i~l~lvgtqd 139 (749)
T KOG0705|consen 96 VDAVVFVFSVEDE-QSFQAVQALAHEMSSYRN--ISDLPLILVGTQD 139 (749)
T ss_pred ccceEEEEEeccc-cCHHHHHHHHhhcccccc--cccchHHhhcCcc
Confidence 9999999999997 788888777666654433 3678888888754
No 378
>PRK12288 GTPase RsgA; Reviewed
Probab=98.29 E-value=9.4e-07 Score=76.07 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
..++++|.+|||||||+|+|.+...
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccc
Confidence 3589999999999999999997643
No 379
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.27 E-value=1.2e-06 Score=70.55 Aligned_cols=73 Identities=25% Similarity=0.351 Sum_probs=55.4
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC---------CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
++++++|.+|+.+-+..|...+....++|||+.+++.. +.+.+....+..+-.+... ..+.+|+++||.
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL--~tisvIlFLNKq 279 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL--RTISVILFLNKQ 279 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH--hhhheeEEecHH
Confidence 67899999999999999999999999999999997641 2233444444444433332 678899999999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
|+..
T Consensus 280 Dlla 283 (379)
T KOG0099|consen 280 DLLA 283 (379)
T ss_pred HHHH
Confidence 9864
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.26 E-value=1.7e-06 Score=75.29 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
...++.++|.+|||||||+|+|........ ...+..|+++..... +..++ ...++||||..
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPLDD---GSFLYDTPGII 221 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEcCC---CcEEEECCCcc
Confidence 456899999999999999999986432111 112334444443332 22222 23799999975
No 381
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.22 E-value=1.5e-06 Score=72.08 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++|.+|||||||+|+|..+
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCch
Confidence 3458899999999999999999864
No 382
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.21 E-value=1.9e-06 Score=67.44 Aligned_cols=68 Identities=24% Similarity=0.282 Sum_probs=42.8
Q ss_pred eeEEEEeCCCCCCchhhH--hhh---ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKL--DEF---LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~--~~~---~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
....++.+.|..+..... ... .-..+.+|.|+|+... .........+...+..++ ++++||+|+.+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~-~~~~~~~~~~~~Qi~~AD--------vIvlnK~D~~~ 155 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNF-DELENIPELLREQIAFAD--------VIVLNKIDLVS 155 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTH-GGHTTHCHHHHHHHCT-S--------EEEEE-GGGHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccc-cccccchhhhhhcchhcC--------EEEEeccccCC
Confidence 467888999977655551 111 1236889999999774 334445555666665543 78899999976
Q ss_pred CC
Q 024385 192 AH 193 (268)
Q Consensus 192 ~~ 193 (268)
..
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 383
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.20 E-value=5e-06 Score=82.50 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=67.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccc--eeeccccceEEeecccccCCceeeEEEEeCCCCC--------CchhhH
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTV--TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS--------RLRPKL 134 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--------~~~~~~ 134 (268)
+=.+|+|++|+||||++++- +-.++-... .......+. +.+.+.-..+ ...++||+|.. .....|
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~-t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGG-TRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCC-CcccceEecC---CEEEEcCCCccccCCCcccccHHHH
Confidence 45899999999999999986 333422110 000000000 0011111112 44799999932 123345
Q ss_pred hhhc---------cCCCEEEEEEeCCCCCC-CH-------HHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 135 DEFL---------PQAAGIVFVVDALEFLP-NC-------SAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 135 ~~~~---------~~~d~ii~v~d~~~~~~-~~-------~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
..++ +..|+||+++|+.+... +- ..+...+.++.+. .....||.|++||+|+.
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~---lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ---LGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEEecchhh
Confidence 5444 34799999999976521 11 2333444444443 23799999999999987
No 384
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.19 E-value=3.3e-06 Score=69.38 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
...++++|.+|+|||||+|+|.+...
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhh
Confidence 46899999999999999999997643
No 385
>PRK14974 cell division protein FtsY; Provisional
Probab=98.18 E-value=1.2e-05 Score=68.91 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=39.6
Q ss_pred eeEEEEeCCCCCCchhh----Hhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.++||+|....... +.... ...|.+++|+|+..+.+..... ..+... -..--+++||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~------~~~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEA------VGIDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhc------CCCCEEEEeeecCC
Confidence 56899999997643222 22222 2578899999998862222222 222211 11346788999986
Q ss_pred CCC
Q 024385 191 TAH 193 (268)
Q Consensus 191 ~~~ 193 (268)
...
T Consensus 293 ~~~ 295 (336)
T PRK14974 293 AKG 295 (336)
T ss_pred CCc
Confidence 543
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=98.18 E-value=2.9e-06 Score=73.12 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..++|+|++|||||||+|+|.++.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCcc
Confidence 458999999999999999999764
No 387
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.16 E-value=3.2e-06 Score=65.99 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=45.9
Q ss_pred eEEEEeCCCCCCchhh------HhhhccCC---CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 118 PVHLVDVPGHSRLRPK------LDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 118 ~~~i~DtpG~~~~~~~------~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
..-++|+|||.+...- ...++.+- =+++|++|+.=-.++..-+..-+..+..... -.+|-|=|++|+|
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~---lE~P~INvlsKMD 175 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS---LEVPHINVLSKMD 175 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH---hcCcchhhhhHHH
Confidence 5689999998764321 22333332 2577888775432222223333333322221 6889999999999
Q ss_pred CCCCCCHHHHHH
Q 024385 189 KVTAHTKEFIRK 200 (268)
Q Consensus 189 l~~~~~~~~~~~ 200 (268)
|....+..++.+
T Consensus 176 Llk~~~k~~l~~ 187 (273)
T KOG1534|consen 176 LLKDKNKKELER 187 (273)
T ss_pred HhhhhhHHHHHH
Confidence 987755444443
No 388
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.12 E-value=3.4e-05 Score=65.79 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=41.5
Q ss_pred eeEEEEeCCCCCCchhhHhhhcc--------CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
....++.|.|..+..+....++. ..+++|.|+|+.......... ......+..+ =+|++||+|
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~-~~~~~Qi~~A--------D~IvlnK~D 161 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYA--------DRILLTKTD 161 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcccc-HHHHHHHHhC--------CEEEEeccc
Confidence 35678999998877666655432 247899999998752212111 1222223322 278899999
Q ss_pred CCCC
Q 024385 189 KVTA 192 (268)
Q Consensus 189 l~~~ 192 (268)
+...
T Consensus 162 l~~~ 165 (318)
T PRK11537 162 VAGE 165 (318)
T ss_pred cCCH
Confidence 9863
No 389
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.12 E-value=3.7e-05 Score=68.13 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=56.4
Q ss_pred eEEEEeCCCCCC-------------chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEe
Q 024385 118 PVHLVDVPGHSR-------------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184 (268)
Q Consensus 118 ~~~i~DtpG~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~ 184 (268)
++.++|.||... .......|+.+.+++|+|+--.. ...-.....++..... +.+...|+|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS----VDAERSnVTDLVsq~D--P~GrRTIfVL 486 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS----VDAERSIVTDLVSQMD--PHGRRTIFVL 486 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC----cchhhhhHHHHHHhcC--CCCCeeEEEE
Confidence 578999999542 23345678999999999984333 3444455566666554 3788899999
Q ss_pred ecCCCCCCC--CHHHHHHHHH
Q 024385 185 NKTDKVTAH--TKEFIRKQME 203 (268)
Q Consensus 185 nK~Dl~~~~--~~~~~~~~l~ 203 (268)
+|+|+.... +++.+++.++
T Consensus 487 TKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 487 TKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred eecchhhhccCCHHHHHHHHh
Confidence 999998753 6666776665
No 390
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.12 E-value=5.7e-05 Score=63.03 Aligned_cols=67 Identities=16% Similarity=0.057 Sum_probs=40.6
Q ss_pred eeEEEEeCCCCCCchhhHh----h---hc-----cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEe
Q 024385 117 KPVHLVDVPGHSRLRPKLD----E---FL-----PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~----~---~~-----~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~ 184 (268)
+.+.++||||......... . .. ..+|.+++|+|++.+.+.+. ......+. -.+--+++
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~----~~~~f~~~------~~~~g~Il 224 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE----QAKVFNEA------VGLTGIIL 224 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH----HHHHHHhh------CCCCEEEE
Confidence 6889999999765332211 1 11 23889999999987622222 22333221 12457899
Q ss_pred ecCCCCCCC
Q 024385 185 NKTDKVTAH 193 (268)
Q Consensus 185 nK~Dl~~~~ 193 (268)
||.|.....
T Consensus 225 TKlDe~~~~ 233 (272)
T TIGR00064 225 TKLDGTAKG 233 (272)
T ss_pred EccCCCCCc
Confidence 999986543
No 391
>PRK00098 GTPase RsgA; Reviewed
Probab=98.05 E-value=8.6e-06 Score=68.98 Aligned_cols=27 Identities=37% Similarity=0.475 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
....++++|++|+|||||+|.|.+...
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcC
Confidence 456799999999999999999987653
No 392
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.05 E-value=5.7e-05 Score=65.12 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=27.1
Q ss_pred eeEEEEeCCCCCCchhhHhhhc-------cCCCEEEEEEeCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFL-------PQAAGIVFVVDALEF 153 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~-------~~~d~ii~v~d~~~~ 153 (268)
....++.|.|..+.......+. -..|++|.|+|+...
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~ 136 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAV 136 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchh
Confidence 4668899999888766655442 135789999999753
No 393
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.05 E-value=1e-05 Score=68.18 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
...++++|++|+|||||+|.|.+...
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhh
Confidence 46899999999999999999987654
No 394
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=8.3e-05 Score=64.45 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=39.1
Q ss_pred eeEEEEeCCCCCCchhh----Hhhhcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEFLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.|+||||....... +...++ ..+.+++|+|++.. ...+...+..+.. -..-=++++|.|-.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk---~~d~~~i~~~F~~-------~~idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---SKDMIEIITNFKD-------IHIDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC---hHHHHHHHHHhcC-------CCCCEEEEEcccCC
Confidence 57899999997542221 223332 35678999998765 2344444433321 11235788999986
Q ss_pred CC
Q 024385 191 TA 192 (268)
Q Consensus 191 ~~ 192 (268)
..
T Consensus 391 ~k 392 (436)
T PRK11889 391 AS 392 (436)
T ss_pred CC
Confidence 54
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=5.8e-05 Score=65.38 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc---cccc--ceeeccc----------------cceEEeecc-------cccCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST---HQGT--VTSMEPN----------------EDTFVLHSE-------STKKG 114 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~---~~~~--~~~~~~~----------------~~~~~~~~~-------~~~~~ 114 (268)
+...++++|++|+||||++.+|..... .... ..+.... ......... ....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 456899999999999999999864311 0001 1111110 000000000 01122
Q ss_pred ceeeEEEEeCCCCCCchhhHh---hhc---cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLD---EFL---PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~---~~~---~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
..+.++||+|......... ..+ ....-.++|++++...+.+.+....+.......... ..-.-=++++|.|
T Consensus 216 --~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~-~~~~~~~I~TKlD 292 (374)
T PRK14722 216 --KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAA-LPDLAGCILTKLD 292 (374)
T ss_pred --CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccc-cCCCCEEEEeccc
Confidence 5789999999764333221 112 223456899999987333333333333322110000 0012347779999
Q ss_pred CCCC
Q 024385 189 KVTA 192 (268)
Q Consensus 189 l~~~ 192 (268)
-...
T Consensus 293 Et~~ 296 (374)
T PRK14722 293 EASN 296 (374)
T ss_pred cCCC
Confidence 7643
No 396
>PRK13796 GTPase YqeH; Provisional
Probab=98.02 E-value=3.3e-05 Score=67.31 Aligned_cols=92 Identities=24% Similarity=0.286 Sum_probs=55.5
Q ss_pred hhccCCC-EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhh
Q 024385 136 EFLPQAA-GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 ~~~~~~d-~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~ 213 (268)
..+...+ .+++|+|+.+...+. ...+..+. .+.|+++|+||+|+.+.. ..+.+.+.+....+..
T Consensus 64 ~~i~~~~~lIv~VVD~~D~~~s~---~~~L~~~~-------~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~---- 129 (365)
T PRK13796 64 NGIGDSDALVVNVVDIFDFNGSW---IPGLHRFV-------GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL---- 129 (365)
T ss_pred HhhcccCcEEEEEEECccCCCch---hHHHHHHh-------CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc----
Confidence 3444455 899999999863332 22333322 467999999999997533 2233332222211110
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ .....++.+||++|. ++++++.|.++.
T Consensus 130 --------------g-----------~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 --------------G-----------LRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred --------------C-----------CCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 0 001147889999998 999999987653
No 397
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.01 E-value=2.7e-05 Score=64.50 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=41.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecc-cccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE-STKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~DtpG~~~ 129 (268)
..++.++|+|-||+|||||+|.+...........+.+...+...--.+ +.+... -.+.++||||...
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGil~ 208 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGILV 208 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCcCC
Confidence 468999999999999999999986544322223333332222211111 222232 3689999999653
No 398
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.00 E-value=0.0001 Score=57.27 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=40.5
Q ss_pred eeEEEEeCCCCCCchhh----Hhhh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.++||||...+... .... ....+.+++|+|+... ....+....+.+. .+ ..-++.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~----~~~~~~~~~~~~~-----~~-~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG----QDAVNQAKAFNEA-----LG-ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC----hHHHHHHHHHHhh-----CC-CCEEEEECCcCC
Confidence 56889999997533211 1111 2348999999999764 2333444444432 22 356778999986
Q ss_pred CC
Q 024385 191 TA 192 (268)
Q Consensus 191 ~~ 192 (268)
..
T Consensus 153 ~~ 154 (173)
T cd03115 153 AR 154 (173)
T ss_pred CC
Confidence 54
No 399
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.99 E-value=0.00024 Score=53.11 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=71.3
Q ss_pred EEEcCCCCcHHHHHHHHHcCCcccc---cceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 68 VLAGLSGSGKTVLFYQLRDGSTHQG---TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 68 ~ivG~~~~GKSsLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+.-|.+|+|||++.-.+...--..+ -.....++.. .-.+.+.++|+|+.. .......+..+|.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~-----------~~~yd~VIiD~p~~~--~~~~~~~l~~aD~v 70 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA-----------NLDYDYIIIDTGAGI--SDNVLDFFLAADEV 70 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC-----------CCCCCEEEEECCCCC--CHHHHHHHHhCCeE
Confidence 4567889999998766532100000 1111111111 111578999999854 34445678899999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
+++++.+.. ++......+..+.... ...++.+|+|+++.. ...++..+.+++.+++
T Consensus 71 viv~~~~~~--s~~~~~~~l~~l~~~~----~~~~~~lVvN~~~~~--~~~~~~~~~~~~~~~r 126 (139)
T cd02038 71 IVVTTPEPT--SITDAYALIKKLAKQL----RVLNFRVVVNRAESP--KEGKKVFKRLSNVSNR 126 (139)
T ss_pred EEEcCCChh--HHHHHHHHHHHHHHhc----CCCCEEEEEeCCCCH--HHHHHHHHHHHHHHHH
Confidence 999999874 4665555555554321 456788999999743 3344455555554444
No 400
>PRK01889 GTPase RsgA; Reviewed
Probab=97.96 E-value=8e-05 Score=64.65 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=56.4
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
..++|.+++|+++... -+...+..++..+.. .++|.+||+||+||.+. .++..+.+. .+
T Consensus 110 aANvD~vliV~s~~p~-~~~~~ldr~L~~a~~------~~i~piIVLNK~DL~~~--~~~~~~~~~----~~-------- 168 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-FNLRRIERYLALAWE------SGAEPVIVLTKADLCED--AEEKIAEVE----AL-------- 168 (356)
T ss_pred EEeCCEEEEEEecCCC-CChhHHHHHHHHHHH------cCCCEEEEEEChhcCCC--HHHHHHHHH----Hh--------
Confidence 4678999999999754 334455555555443 67788999999999753 211112211 10
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHH
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 263 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 263 (268)
...++++.+||++|+ +++|.++|.
T Consensus 169 ----------------------~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 169 ----------------------APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred ----------------------CCCCcEEEEECCCCccHHHHHHHhh
Confidence 223578999999998 999999885
No 401
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.95 E-value=4.2e-05 Score=57.88 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=36.4
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
+.+.++||+|... ....++..+|-+++|..++.. +...-.+- .+. ..-=++++||+|
T Consensus 92 ~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~-D~y~~~k~---~~~--------~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAG-DDIQAIKA---GIM--------EIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccCh---hhhhHHHhCCEEEEEECCCch-hHHHHhhh---hHh--------hhcCEEEEeCCC
Confidence 6889999999652 234588889999999877743 21211111 122 222378899998
No 402
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.92 E-value=7.4e-06 Score=71.93 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
..+|.+||.|||||||+||.|.+.+. ...+.+|+-+..... +.+.. .+.+.|+||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk---VsVS~TPGkTKHFQT--i~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK---VSVSSTPGKTKHFQT--IFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce---eeeecCCCCcceeEE--EEcCC---CceecCCCCcc
Confidence 47899999999999999999999874 222333433322222 22222 57899999964
No 403
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.91 E-value=2.3e-05 Score=62.10 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=38.6
Q ss_pred eeEEEEeCCCCCCchhh----Hhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.++||||....... +..++ ...+-+++|+|++... +.+. ........ .+ +-=++++|.|..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~---~~~~-~~~~~~~~-----~~-~~~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ---EDLE-QALAFYEA-----FG-IDGLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG---HHHH-HHHHHHHH-----SS-TCEEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh---HHHH-HHHHHhhc-----cc-CceEEEEeecCC
Confidence 57899999997654332 22222 2567899999999872 3332 22233221 11 224669999986
Q ss_pred CC
Q 024385 191 TA 192 (268)
Q Consensus 191 ~~ 192 (268)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 404
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.89 E-value=5.9e-05 Score=46.37 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=29.4
Q ss_pred CCCEEEEEEeCCCCC-CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 140 QAAGIVFVVDALEFL-PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
-.++++|++|+++.. -++++....+.++... ..+.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~----F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL----FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH----TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH----cCCCCEEEEEeccC
Confidence 368899999999863 2577777777777664 25999999999998
No 405
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.88 E-value=4.3e-06 Score=66.22 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=55.7
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCC---------CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
..+.++|.+|+..-+..|.+.+.+.-.++|++..++. ++.+++....+..++..... .+.++|+++||.
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF--~nssVIlFLNKk 276 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF--QNSSVILFLNKK 276 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc--cCCceEEEechh
Confidence 5678999999988788888888777666666554321 24567777778888876554 789999999999
Q ss_pred CCCCC
Q 024385 188 DKVTA 192 (268)
Q Consensus 188 Dl~~~ 192 (268)
|+..+
T Consensus 277 DlLEe 281 (359)
T KOG0085|consen 277 DLLEE 281 (359)
T ss_pred hhhhh
Confidence 99753
No 406
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.87 E-value=0.0002 Score=53.85 Aligned_cols=109 Identities=22% Similarity=0.387 Sum_probs=61.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc----CCcccccceeeccccceEEeecccccCCceeeEEEEeCC-CCC--------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD----GSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVP-GHS-------- 128 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dtp-G~~-------- 128 (268)
+...+|.+.|+||+||||++.++.. ..+.. +-+. ..++..+|+..-+.++|+. |..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv----------gGf~-t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~ 71 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV----------GGFI-TPEVREGGKRIGFKIVDLATGEEGILARVGF 71 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCcee----------eeEE-eeeeecCCeEeeeEEEEccCCceEEEEEcCC
Confidence 3567999999999999999988753 22211 1111 1223345555667777776 311
Q ss_pred ------Cc-----------hhhHhhhccCCCEEEEEEeCCCCCC-CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 129 ------RL-----------RPKLDEFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 129 ------~~-----------~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
+| .+..+..++.+|++ ++|=-.+.+ ......+.+..++. .+.|++.++.+-+.
T Consensus 72 ~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~------~~kpliatlHrrsr 142 (179)
T COG1618 72 SRPRVGKYGVNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLK------SGKPLIATLHRRSR 142 (179)
T ss_pred CCcccceEEeeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhc------CCCcEEEEEecccC
Confidence 11 11233444556754 456555421 11223333444443 78899999887765
No 407
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.87 E-value=0.00028 Score=62.65 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=38.5
Q ss_pred eeEEEEeCCCCCCch----hhHhhhcc---CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLR----PKLDEFLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~D 188 (268)
+.+.++||||..... ..+...+. ...-+.+|++++.. ...+...+..+ ...+ --+++||.|
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~---~~~l~~~~~~f--------~~~~~~~vI~TKlD 368 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK---YEDLKDIYKHF--------SRLPLDGLIFTKLD 368 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC---HHHHHHHHHHh--------CCCCCCEEEEeccc
Confidence 678999999975432 22333433 23467888998775 23333333332 1222 258899999
Q ss_pred CCCC
Q 024385 189 KVTA 192 (268)
Q Consensus 189 l~~~ 192 (268)
-...
T Consensus 369 et~~ 372 (424)
T PRK05703 369 ETSS 372 (424)
T ss_pred cccc
Confidence 8543
No 408
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.00015 Score=65.16 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc-----ccccceeecccc-------------ceEEeecc---------cccCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST-----HQGTVTSMEPNE-------------DTFVLHSE---------STKKGK 115 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~-----~~~~~~~~~~~~-------------~~~~~~~~---------~~~~~~ 115 (268)
....++++|++|+||||++..|...-. ..-...+.++.. -...+... +... .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 457899999999999999988753200 000111111100 00001100 0000 1
Q ss_pred eeeEEEEeCCCCCCchhhHhh---hcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDE---FLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~---~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.+.+.|+||+|.......... .+. .....++|++++.. ...+...+..+. ...+.-+++||.|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss---~~Dl~eii~~f~-------~~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH---FSDLDEVVRRFA-------HAKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC---hhHHHHHHHHHH-------hhCCeEEEEecCcCc
Confidence 267899999997543222111 111 12346788888764 344444444332 223567999999985
Q ss_pred C
Q 024385 191 T 191 (268)
Q Consensus 191 ~ 191 (268)
.
T Consensus 498 ~ 498 (559)
T PRK12727 498 G 498 (559)
T ss_pred c
Confidence 4
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.83 E-value=0.00016 Score=62.60 Aligned_cols=117 Identities=22% Similarity=0.290 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC------Ccccccceeeccccce------------EEeec-----c-----cccCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG------STHQGTVTSMEPNEDT------------FVLHS-----E-----STKKG 114 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~------~~~~~~~~~~~~~~~~------------~~~~~-----~-----~~~~~ 114 (268)
+...|+++||+||||||-+-.|... +....-+++....++. .++.. + ....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 4778999999999999988776332 2111111111111000 00000 0 01122
Q ss_pred ceeeEEEEeCCCCCCchh----hHhhhccCC--CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE-EEEeecC
Q 024385 115 KIKPVHLVDVPGHSRLRP----KLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LICCNKT 187 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~----~~~~~~~~~--d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi-ivv~nK~ 187 (268)
+.+.++||.|...+.. .+..++..+ .-+.+|++++.. ...+...+..+ ..+|+ -++++|.
T Consensus 282 --~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K---~~dlkei~~~f--------~~~~i~~~I~TKl 348 (407)
T COG1419 282 --CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK---YEDLKEIIKQF--------SLFPIDGLIFTKL 348 (407)
T ss_pred --CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc---hHHHHHHHHHh--------ccCCcceeEEEcc
Confidence 5789999999765432 344555443 345678888876 34554444443 23333 3678999
Q ss_pred CCCCC
Q 024385 188 DKVTA 192 (268)
Q Consensus 188 Dl~~~ 192 (268)
|-...
T Consensus 349 DET~s 353 (407)
T COG1419 349 DETTS 353 (407)
T ss_pred cccCc
Confidence 97643
No 410
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=4.5e-05 Score=74.30 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=65.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC--------CchhhHhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS--------RLRPKLDE 136 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--------~~~~~~~~ 136 (268)
+=.+|+|++|+||||++..- +.+|+-.....-....+.-+.+.+.-+.+ .-.++||+|.. .-...|..
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence 34789999999999988753 22222111100000000001222222223 45799999932 11233443
Q ss_pred h---------ccCCCEEEEEEeCCCCCCC--------HHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 137 F---------LPQAAGIVFVVDALEFLPN--------CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 137 ~---------~~~~d~ii~v~d~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+ .+..|+||+.+|+.+-... ...+...+.++... .....|+++++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t---L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET---LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh---hccCCceEEEEecccccc
Confidence 3 2457999999999764211 11123334444333 237899999999999976
No 411
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.79 E-value=0.00014 Score=58.14 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=40.6
Q ss_pred eEEEEeC-CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCC-CcEEEEeecCCCC
Q 024385 118 PVHLVDV-PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK-IPVLICCNKTDKV 190 (268)
Q Consensus 118 ~~~i~Dt-pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~piivv~nK~Dl~ 190 (268)
.+.++|| +|.+.|. +...+.+|.+|.|+|++.. ++. ..+.+.++.+. -+ .++.+|+||+|-.
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~--sl~-taeri~~L~~e-----lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK--SLR-TAERIKELAEE-----LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcHH--HHH-HHHHHHHHHHH-----hCCceEEEEEeeccch
Confidence 4555565 3443332 3345679999999999984 443 34445555554 34 7899999999964
No 412
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.72 E-value=4.6e-05 Score=60.66 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=40.7
Q ss_pred eeEEEEeCCCCCCchhh------HhhhccCCCE---EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPK------LDEFLPQAAG---IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~------~~~~~~~~d~---ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
....++|+|||.++... .-+++++.+. ++-.+|+---.+.-.-+...+..+...- ....|-+=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl---~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML---HMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH---hhcccchhhhhHh
Confidence 46789999998764322 2244555553 4445555321111233333333333221 1577888899999
Q ss_pred CCCCCC
Q 024385 188 DKVTAH 193 (268)
Q Consensus 188 Dl~~~~ 193 (268)
|+....
T Consensus 174 Dl~~~y 179 (290)
T KOG1533|consen 174 DLLKKY 179 (290)
T ss_pred HHHHhh
Confidence 987643
No 413
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.70 E-value=0.00037 Score=58.10 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=62.4
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
..+.|-+++|+.+.++.-+...+..+|...-. .++..+||+||+||........ +.......
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~------~gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~---------- 138 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA------GGIEPVIVLNKIDLLDDEEAAV--KELLREYE---------- 138 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH------cCCcEEEEEEccccCcchHHHH--HHHHHHHH----------
Confidence 34577888888998885566667776655543 6788888999999987655443 22222222
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
...++++.+||++++ +++|.+++..+
T Consensus 139 ----------------------~~gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 139 ----------------------DIGYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ----------------------hCCeeEEEecCcCcccHHHHHHHhcCC
Confidence 235689999999998 99999887654
No 414
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.69 E-value=0.0011 Score=51.76 Aligned_cols=66 Identities=17% Similarity=0.054 Sum_probs=48.4
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
.+.+.++|||+... ......+..+|.+++++.++.. +.......+..+.. .+.|+.+|+||+|...
T Consensus 92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~--~~~~~~~~~~~l~~------~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS--GLHDLERAVELVRH------FGIPVGVVINKYDLND 157 (179)
T ss_pred CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc--cHHHHHHHHHHHHH------cCCCEEEEEeCCCCCc
Confidence 37899999997643 2445567889999999999864 56666666654433 4567899999999753
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00012 Score=63.17 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
+...++++|+.||||||++..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46678999999999999998875
No 416
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.67 E-value=7e-05 Score=63.95 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=40.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
.++...|.++|.||+||||+||.|...+... +..+ .+...+-..++.. .++-++|+||..-
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCk--vAPI---pGETKVWQYItLm---krIfLIDcPGvVy 364 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCK--VAPI---PGETKVWQYITLM---KRIFLIDCPGVVY 364 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhccccc--ccCC---CCcchHHHHHHHH---hceeEecCCCccC
Confidence 4678899999999999999999999887521 2222 2222211112222 3688999999653
No 417
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.65 E-value=0.00017 Score=63.92 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=25.9
Q ss_pred eeEEEEeCCCCCCchhhH----h--hhccCCCEEEEEEeCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKL----D--EFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~----~--~~~~~~d~ii~v~d~~~~ 153 (268)
+.+.|+||||........ . ..+..+|.+++|+|++.+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 478999999976543221 1 123467899999999886
No 418
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00045 Score=60.88 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....++++|++|+||||++..|.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998754
No 419
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00016 Score=61.64 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=34.6
Q ss_pred ceeeEEEEeCCCCCCch-hhHhh-----hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHH
Q 024385 115 KIKPVHLVDVPGHSRLR-PKLDE-----FLPQAAGIVFVVDALEFLPNCSAASEYLYDIL 168 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~-~~~~~-----~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~ 168 (268)
+.+.+.|+||+|..... ++... -.-..|-+|||+|++-+ .........+.+..
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG-Qaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG-QAAEAQARAFKETV 240 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc-HhHHHHHHHHHHhh
Confidence 34789999999954432 22221 12347899999999988 55555555555543
No 420
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.60 E-value=0.003 Score=55.05 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
....-+.+|||..+|||||++||.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 456789999999999999999983
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.49 E-value=0.00027 Score=62.53 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=24.8
Q ss_pred eeEEEEeCCCCCCchhhHh----h--hccCCCEEEEEEeCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLD----E--FLPQAAGIVFVVDALEF 153 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~----~--~~~~~d~ii~v~d~~~~ 153 (268)
+.+.|+||||........- . ..-..+.+++|+|+..+
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 5789999999654322211 1 12347889999999875
No 422
>PRK10867 signal recognition particle protein; Provisional
Probab=97.48 E-value=0.00083 Score=59.55 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l 84 (268)
+...|+++|++|+||||++-.|
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3567999999999999976655
No 423
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00071 Score=63.63 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...++++|+.|+||||++..|..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 45789999999999999988764
No 424
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.47 E-value=0.0011 Score=54.99 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=47.6
Q ss_pred eeEEEEeCCCCCCchhhHhhhcc--------CCCEEEEEEeCCCCCCCHHHH--HHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAA--SEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
+.-.++.|.|..+..+....|+. ..|++|-|+|+......+.+. ...+.+...+. ...=-++.||
T Consensus 146 fD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi-----A~AD~II~NK 220 (391)
T KOG2743|consen 146 FDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI-----ALADRIIMNK 220 (391)
T ss_pred cceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH-----hhhheeeecc
Confidence 45678999999988777666553 368999999996531000000 01111111111 0112467899
Q ss_pred CCCCCCCCHHHHHHHHH
Q 024385 187 TDKVTAHTKEFIRKQME 203 (268)
Q Consensus 187 ~Dl~~~~~~~~~~~~l~ 203 (268)
.|+........+++.+.
T Consensus 221 tDli~~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 221 TDLVSEEEVKKLRQRIR 237 (391)
T ss_pred ccccCHHHHHHHHHHHH
Confidence 99998766555555554
No 425
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.45 E-value=0.0001 Score=63.06 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=40.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
++..++.|+|.||+||||+||+|..... ......|+.++... ++..+. .+.|+|.||..
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~---C~vg~~pGvT~smq--eV~Ldk---~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA---CNVGNVPGVTRSMQ--EVKLDK---KIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc---ccCCCCccchhhhh--heeccC---CceeccCCcee
Confidence 4578999999999999999999988764 12222233332221 233333 68999999964
No 426
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.00051 Score=60.25 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=60.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCC-cccc---cceeecc----------------ccceEEee--c--ccccCCceeeE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGS-THQG---TVTSMEP----------------NEDTFVLH--S--ESTKKGKIKPV 119 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~-~~~~---~~~~~~~----------------~~~~~~~~--~--~~~~~~~~~~~ 119 (268)
...++++|++||||||++.+|.... ...+ ...+.++ ........ . .-......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4468999999999999998886421 0000 0111111 00000000 0 00011123578
Q ss_pred EEEeCCCCCCch-hh---Hhhhcc-----CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 120 HLVDVPGHSRLR-PK---LDEFLP-----QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 120 ~i~DtpG~~~~~-~~---~~~~~~-----~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.++||||..... .. +..+++ ...-.++|+|++.. ...+....... . .--+-=++++|.|-.
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~---~~~~~~~~~~f-~------~~~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS---YHHTLTVLKAY-E------SLNYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC---HHHHHHHHHHh-c------CCCCCEEEEEcccCC
Confidence 999999975321 11 223332 13367899999987 23333333322 1 112335788999975
Q ss_pred CC
Q 024385 191 TA 192 (268)
Q Consensus 191 ~~ 192 (268)
..
T Consensus 373 ~~ 374 (432)
T PRK12724 373 DF 374 (432)
T ss_pred CC
Confidence 43
No 427
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00052 Score=60.13 Aligned_cols=72 Identities=22% Similarity=0.203 Sum_probs=46.8
Q ss_pred eeEEEEeCCCCCCchhh----Hhhh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.++||+|...-... +..+ ....|.++||-.+--+.+++.++..+-..+..+.. +..-=-++++|+|..
T Consensus 467 fDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~---~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 467 FDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHST---PRLIDGILLTKFDTV 543 (587)
T ss_pred CCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCC---ccccceEEEEeccch
Confidence 78999999996543222 2222 35689999998887765667777666555554321 222234788999986
Q ss_pred C
Q 024385 191 T 191 (268)
Q Consensus 191 ~ 191 (268)
+
T Consensus 544 ~ 544 (587)
T KOG0781|consen 544 D 544 (587)
T ss_pred h
Confidence 5
No 428
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.00088 Score=55.71 Aligned_cols=120 Identities=16% Similarity=0.096 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccc---ccceeeccc-------------cceEEeec--c-------c-cc-CCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEPN-------------EDTFVLHS--E-------S-TK-KGK 115 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~---~~~~~~~~~-------------~~~~~~~~--~-------~-~~-~~~ 115 (268)
+..+++++|++|+||||++..+...-... ....+..+. ...+.+.. . + .. ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 44799999999999999998774321100 000111000 00011100 0 0 00 111
Q ss_pred eeeEEEEeCCCCCCchhh----Hhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 116 IKPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
.+.+.++||||....... +..++ ...+-+++|+|++.. .+.+...+..+. .-.+-=++++|.|-
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~---~~d~~~~~~~f~-------~~~~~~~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---SKDMIEIITNFK-------DIHIDGIVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC---HHHHHHHHHHhC-------CCCCCEEEEEeecC
Confidence 268899999997643222 22232 235678999999865 344444444432 12233578899998
Q ss_pred CCC
Q 024385 190 VTA 192 (268)
Q Consensus 190 ~~~ 192 (268)
...
T Consensus 224 t~~ 226 (270)
T PRK06731 224 TAS 226 (270)
T ss_pred CCC
Confidence 654
No 429
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.00051 Score=57.87 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.+.+.++++|-.|+||||-+-.|.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA 160 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLA 160 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHH
Confidence 457889999999999999887763
No 430
>PRK13695 putative NTPase; Provisional
Probab=97.38 E-value=0.0019 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+++++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998653
No 431
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.00071 Score=58.90 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=32.9
Q ss_pred eeEEEEeCCCCCCchhhHhh------hccCCCEEEEEEeCCCCCCCHHHHHHHHHHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDE------FLPQAAGIVFVVDALEFLPNCSAASEYLYDI 167 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~------~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~ 167 (268)
+.+.|+||+|.......+-. ..-+.|=+++|+|+.-+ +........+.+-
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G-QdA~~~A~aF~e~ 238 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG-QDAVNTAKAFNEA 238 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc-hHHHHHHHHHhhh
Confidence 57899999997655443322 23457889999999988 3344444444443
No 432
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0011 Score=58.02 Aligned_cols=66 Identities=20% Similarity=0.138 Sum_probs=39.6
Q ss_pred eeEEEEeCCCCCCchh----hHhhhccCC--C-EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 117 KPVHLVDVPGHSRLRP----KLDEFLPQA--A-GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~----~~~~~~~~~--d-~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
+.+.++||+|...... ....++..+ + -.++|+|++.. ...+.+.+..... --+-=++++|.|-
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~---~~~~~~~~~~~~~-------~~~~~~I~TKlDe 324 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK---TSDVKEIFHQFSP-------FSYKTVIFTKLDE 324 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC---HHHHHHHHHHhcC-------CCCCEEEEEeccC
Confidence 6899999999654221 222333322 3 58899999987 3444444433321 1234578899997
Q ss_pred CCC
Q 024385 190 VTA 192 (268)
Q Consensus 190 ~~~ 192 (268)
...
T Consensus 325 t~~ 327 (388)
T PRK12723 325 TTC 327 (388)
T ss_pred CCc
Confidence 544
No 433
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.29 E-value=0.0031 Score=43.28 Aligned_cols=97 Identities=23% Similarity=0.216 Sum_probs=56.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-HhhhccCCCEEE
Q 024385 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIV 145 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-~~~~~~~~d~ii 145 (268)
+++.|..|+||||+...+...--..+... ... + .+.++|+++....... .......+|.++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v--------~~~------~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi 63 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRV--------LLI------D----DYVLIDTPPGLGLLVLLCLLALLAADLVI 63 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeE--------EEE------C----CEEEEeCCCCccchhhhhhhhhhhCCEEE
Confidence 67889999999999988764311000000 000 1 4689999987542221 245667899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEee
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 185 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~n 185 (268)
++++.... +................ ....++.++.|
T Consensus 64 ~v~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~vv~N 99 (99)
T cd01983 64 IVTTPEAL--AVLGARRLTEVVLELAI--EGLRPVGVVVN 99 (99)
T ss_pred EecCCchh--hHHHHHHHHHHHHHhhc--cCCceEEEEeC
Confidence 99998875 35555444332222211 14555666655
No 434
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.29 E-value=0.0012 Score=59.16 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...++++|+.||||||++..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 45799999999999999998764
No 435
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0017 Score=52.43 Aligned_cols=131 Identities=17% Similarity=0.207 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCCC--cHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 63 KSTTIVLAGLSGS--GKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 63 ~~~~i~ivG~~~~--GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+-++++|.+|+ ||-+|+.+|....|......+.......+++....... .+.+.=.+-.+++.-........
T Consensus 3 ~rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysa----di~lcishicde~~lpn~~~a~p 78 (418)
T KOG4273|consen 3 GRPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSA----DINLCISHICDEKFLPNAEIAEP 78 (418)
T ss_pred CCceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeec----ceeEEeecccchhccCCcccccc
Confidence 3567899999999 99999999988877443222211111112222111111 12222222222211111122233
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCC-CHHHHHHHHHH
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAH-TKEFIRKQMEK 204 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~-~~~~~~~~l~~ 204 (268)
..++++|||.+.. ..+..+..|+.-. .. +..- ++.++||+|.++.. ..++.+..+.+
T Consensus 79 l~a~vmvfdlse~-s~l~alqdwl~ht----di--nsfdillcignkvdrvphhlahdeyrrrl~k 137 (418)
T KOG4273|consen 79 LQAFVMVFDLSEK-SGLDALQDWLPHT----DI--NSFDILLCIGNKVDRVPHHLAHDEYRRRLAK 137 (418)
T ss_pred eeeEEEEEeccch-hhhHHHHhhcccc----cc--ccchhheecccccccccchhhhhHHHHHHHh
Confidence 5688999999997 6677777776422 11 2222 45679999998754 34555555543
No 436
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.23 E-value=0.0024 Score=44.94 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=49.2
Q ss_pred EEEEc-CCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 67 IVLAG-LSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 67 i~ivG-~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
+++.| ..|+||||+...+...--.. . ........+.. +.+.++|+|+... ......+..+|.++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-~-------~~vl~~d~d~~-----~d~viiD~p~~~~--~~~~~~l~~ad~vi 66 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-G-------KRVLLIDLDPQ-----YDYIIIDTPPSLG--LLTRNALAAADLVL 66 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-C-------CcEEEEeCCCC-----CCEEEEeCcCCCC--HHHHHHHHHCCEEE
Confidence 55666 56999999877654311000 0 00011111101 4679999999753 33447778899999
Q ss_pred EEEeCCCCCCCHHHHHHHHH
Q 024385 146 FVVDALEFLPNCSAASEYLY 165 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~ 165 (268)
++++.+.. ++......+.
T Consensus 67 v~~~~~~~--s~~~~~~~~~ 84 (104)
T cd02042 67 IPVQPSPL--DLDGLEKLLE 84 (104)
T ss_pred EeccCCHH--HHHHHHHHHH
Confidence 99988764 4666655554
No 437
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.23 E-value=0.00037 Score=54.08 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=28.7
Q ss_pred CEEEEEEeCCCCCCCH-HHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 142 AGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
|++++|+|+..+..+. ..+.+.+. +.. .+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~--l~~-----~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL--QAG-----GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH--hcc-----CCCCEEEEEehhhcCCH
Confidence 7899999998862222 22222211 221 56899999999999653
No 438
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.20 E-value=0.0095 Score=46.13 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=44.9
Q ss_pred eEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 118 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 118 ~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
.+.++|+|+... ......+..+|.+|++++++.. ++......+..+... ....+.+++|+.|-..
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~~~~~-----~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEIS--SLRDADRVKGLLEAL-----GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcc--hHHHHHHHHHHHHHc-----CCceEEEEEeCCcccc
Confidence 589999998643 2345567889999999998874 466665554444331 2335678999998754
No 439
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.17 E-value=0.0024 Score=53.46 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=62.5
Q ss_pred HHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------
Q 024385 58 VFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL------- 130 (268)
Q Consensus 58 ~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~------- 130 (268)
..+..+.+.++++|++|.|||++++++....... ..+.. ..+.+..+.+|...+.
T Consensus 55 ~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-----~d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 55 YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-----SDEDA-------------ERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-----CCCCC-------------ccccEEEEecCCCCChHHHHHHH
Confidence 3445678899999999999999999998765321 11110 1134555555543221
Q ss_pred -----------------hhhHhhhccCCCEEEEEEeCCCC--CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 131 -----------------RPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 131 -----------------~~~~~~~~~~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
.......++...+=+++||=-.. .-+.......+..+..-.+ .-++|+|.||++
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N--eL~ipiV~vGt~ 189 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN--ELQIPIVGVGTR 189 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh--ccCCCeEEeccH
Confidence 12223456677788889885331 0123333333333322211 268999999874
No 440
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.12 E-value=0.0074 Score=42.77 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=59.1
Q ss_pred EEcCCCCcHHHHHHHHHcCCccc-c---cceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 69 LAGLSGSGKTVLFYQLRDGSTHQ-G---TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 69 ivG~~~~GKSsLi~~l~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
+-+..|+||||+...|...--.. + ......++. . ..+.++|+|+... ......+..+|.+
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~-----------~---~D~IIiDtpp~~~--~~~~~~l~~aD~v 68 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF-----------G---DDYVVVDLGRSLD--EVSLAALDQADRV 68 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC-----------C---CCEEEEeCCCCcC--HHHHHHHHHcCeE
Confidence 34567899999877664321100 0 111111111 1 1679999998653 3345577889999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCC-CCcEEEEeec
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKK-KIPVLICCNK 186 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~piivv~nK 186 (268)
+++++.+.. ++......+..+.+... . ..++.+|+|+
T Consensus 69 lvvv~~~~~--s~~~~~~~~~~l~~~~~---~~~~~~~lVvNr 106 (106)
T cd03111 69 FLVTQQDLP--SIRNAKRLLELLRVLDY---SLPAKIELVLNR 106 (106)
T ss_pred EEEecCChH--HHHHHHHHHHHHHHcCC---CCcCceEEEecC
Confidence 999988874 56666666665554321 2 4567788885
No 441
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.08 E-value=0.00046 Score=50.02 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 442
>PRK01889 GTPase RsgA; Reviewed
Probab=97.06 E-value=0.00072 Score=58.76 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...+++++|.+|+|||||+|.+.+..
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhc
Confidence 45689999999999999999998754
No 443
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.00047 Score=55.78 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...--|+++|++|||||||++-+.+-.
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355569999999999999999987643
No 444
>PRK08118 topology modulation protein; Reviewed
Probab=96.99 E-value=0.00064 Score=52.51 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 445
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.98 E-value=0.00081 Score=57.68 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=52.7
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCC-CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
.|...+...+..+|+||.|+|+.++.. ...++.+++... ..+...|+|+||+|+.+....+.....+.++..
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-------~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-------HGNKKLILVLNKIDLVPREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-------cCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence 445556667788999999999999832 233444443221 156899999999999998888878777776555
Q ss_pred HH
Q 024385 208 KL 209 (268)
Q Consensus 208 ~~ 209 (268)
.+
T Consensus 208 tv 209 (435)
T KOG2484|consen 208 TV 209 (435)
T ss_pred cc
Confidence 43
No 446
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.93 E-value=0.00094 Score=42.13 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 024385 65 TTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~ 85 (268)
...+|.|+.|+||||++..+.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999998865
No 447
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.92 E-value=0.00075 Score=50.39 Aligned_cols=20 Identities=45% Similarity=0.690 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 024385 67 IVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~ 86 (268)
|+++|++||||||++.++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 448
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.91 E-value=0.00097 Score=52.82 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=23.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++||+|||||||++++-+-+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 466789999999999999999987644
No 449
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.89 E-value=0.0032 Score=53.95 Aligned_cols=73 Identities=29% Similarity=0.338 Sum_probs=49.4
Q ss_pred EEEeCCCCC-CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH
Q 024385 120 HLVDVPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 198 (268)
Q Consensus 120 ~i~DtpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 198 (268)
.+-+.|||. ++.......+..+|+++-|+|+.++..+... .+..+. .+.|.++|+||+|+.+....+..
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~---~l~~~v-------~~k~~i~vlNK~DL~~~~~~~~W 82 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP---ELERIV-------KEKPKLLVLNKADLAPKEVTKKW 82 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc---cHHHHH-------ccCCcEEEEehhhcCCHHHHHHH
Confidence 455568875 4556677889999999999999998433222 233333 45566999999999876544444
Q ss_pred HHHH
Q 024385 199 RKQM 202 (268)
Q Consensus 199 ~~~l 202 (268)
.+.+
T Consensus 83 ~~~~ 86 (322)
T COG1161 83 KKYF 86 (322)
T ss_pred HHHH
Confidence 4433
No 450
>PRK07261 topology modulation protein; Provisional
Probab=96.84 E-value=0.00093 Score=51.83 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+|+|+|++|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 451
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.82 E-value=0.0028 Score=48.96 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|++.|++|+|||||++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999764
No 452
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0011 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+|+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 453
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.80 E-value=0.00097 Score=53.63 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.--++|+|++|||||||+|-+-+-.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456679999999999999999886543
No 454
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.76 E-value=0.0034 Score=47.97 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+.++|.+|+|||||+.++..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 455
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.73 E-value=0.0015 Score=42.45 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 456
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.72 E-value=0.0016 Score=48.30 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 356689999999999999999888754
No 457
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.67 E-value=0.0012 Score=50.65 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=17.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
No 458
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.60 E-value=0.0018 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+.|+|+|+.|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
No 459
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.0031 Score=48.85 Aligned_cols=26 Identities=42% Similarity=0.562 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+..-+++.||+|+||||++++|....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568999999999999999998765
No 460
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.60 E-value=0.0035 Score=55.64 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=42.8
Q ss_pred hhccCCCEEEEEEeCCCCCC-CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 136 EFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
+.+..+|+||.++|+.++.= ....+..+..... ..+..++++||+||..........+.+.
T Consensus 170 RVlErSDivvqIVDARnPllfr~~dLe~Yvke~d-------~~K~~~LLvNKaDLl~~~qr~aWa~YF~ 231 (562)
T KOG1424|consen 170 RVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-------PSKANVLLVNKADLLPPEQRVAWAEYFR 231 (562)
T ss_pred HHHhhcceEEEEeecCCccccCChhHHHHHhccc-------cccceEEEEehhhcCCHHHHHHHHHHHH
Confidence 46678999999999999721 1233444444332 5678899999999998776666666654
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.57 E-value=0.0025 Score=46.73 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
...++++|++|+||||++..+...-.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 45799999999999999999987543
No 462
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.56 E-value=0.0018 Score=55.34 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..--++++||+|||||||++.+.+=.
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44569999999999999999987643
No 463
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.55 E-value=0.0036 Score=47.77 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.+++.||+|||||||++.+..
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh
Confidence 4667899999999999999998875
No 464
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.55 E-value=0.0021 Score=47.91 Aligned_cols=21 Identities=48% Similarity=0.714 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 465
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.54 E-value=0.0018 Score=51.78 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++...|+++|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999875
No 466
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.54 E-value=0.0045 Score=51.38 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=41.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--cccccceeec-cccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGTVTSME-PNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
.+-.-|.|+|+..+|||.|+|+|.+.. |.. ..+.. .+.|.+.... ....+..+.+.+.||.|..+
T Consensus 19 ~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~--~~~~~~~T~Giw~w~~-~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 19 QPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSW--GPTVEPCTKGIWMWSE-PLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp SBEEEEEEEEETTSSHHHHHHHHCCBSSSSES--SSCSSST-SCEEEECC-E-TTSTCEEEEEEEEECBTT
T ss_pred CCEEEEEeecCCccchHHHHHHHhcccccccc--cCCCCCCCcceeeeec-ccccccceeEEEecchhccc
Confidence 345568999999999999999998642 211 12222 2334443332 23345557899999999866
No 467
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.52 E-value=0.0021 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+..-++|+|++|||||||+++|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45566889999999999999999754
No 468
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.50 E-value=0.0027 Score=44.87 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
....++++|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 44579999999999999999976
No 469
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.49 E-value=0.0027 Score=49.04 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.+.|+|++|+|||||+|-+.+=.
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 356689999999999999999887643
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.49 E-value=0.0026 Score=49.97 Aligned_cols=23 Identities=48% Similarity=0.577 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..++++|++|||||||++.|...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999664
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.48 E-value=0.0029 Score=49.29 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++++|+.|+|||||++.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4677899999999999999998753
No 472
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.47 E-value=0.011 Score=50.41 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...+++|+|++|||||||++.|...
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 473
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.46 E-value=0.0024 Score=46.72 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998764
No 474
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0025 Score=49.86 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++++|++|||||||+|-+.+
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHHHHhc
Confidence 4566799999999999999998765
No 475
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.43 E-value=0.0028 Score=49.38 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998654
No 476
>PRK14530 adenylate kinase; Provisional
Probab=96.43 E-value=0.003 Score=50.89 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 024385 64 STTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
..+|+|+|+|||||||+.+.|.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999885
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.43 E-value=0.0031 Score=49.60 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....++++|++|+|||||++.+.+-
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35678999999999999999998764
No 478
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.41 E-value=0.0027 Score=46.27 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.41 E-value=0.003 Score=48.86 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....+.|+|++|||||||+.++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4557899999999999999998754
No 480
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.0032 Score=49.91 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=20.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...-.+++||+|||||||++.|-.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 3455679999999999999988743
No 481
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.37 E-value=0.0086 Score=49.98 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=23.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....++++|++||||||+++.+...
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhhh
Confidence 35789999999999999999999764
No 482
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0029 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+..++|++.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4678999999999999999999863
No 483
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.36 E-value=0.0037 Score=48.70 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999999988753
No 484
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.36 E-value=0.0029 Score=50.66 Aligned_cols=26 Identities=42% Similarity=0.482 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|+|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998753
No 485
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.35 E-value=0.0036 Score=48.77 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..++++|++|||||||++.|...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 35899999999999999999874
No 486
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.35 E-value=0.0037 Score=51.37 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+..--++++||.|||||||++.+.+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4566789999999999999999876
No 487
>PRK08233 hypothetical protein; Provisional
Probab=96.34 E-value=0.0036 Score=48.75 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..-|+|.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999998753
No 488
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.34 E-value=0.0052 Score=53.01 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....+|+|+|++|||||||++.|...
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcc
Confidence 47788999999999999999999865
No 489
>PRK06217 hypothetical protein; Validated
Probab=96.33 E-value=0.0033 Score=49.24 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 490
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.33 E-value=0.0029 Score=50.17 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
|+++|++|||||||.+.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998653
No 491
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.31 E-value=0.0074 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.++|+|+++||||++...+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6899999999999999998754
No 492
>PRK04195 replication factor C large subunit; Provisional
Probab=96.31 E-value=0.04 Score=50.03 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...+++.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999764
No 493
>PLN02796 D-glycerate 3-kinase
Probab=96.31 E-value=0.017 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|.|+|++|||||||++.|.+
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 456799999999999999998764
No 494
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.30 E-value=0.004 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+++++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999873
No 495
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.29 E-value=0.0041 Score=49.56 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...++++|++|||||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5567999999999999999998764
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.27 E-value=0.0043 Score=48.81 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+..-|+++|++|||||||+++|....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45568999999999999999998753
No 497
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.25 E-value=0.0094 Score=43.97 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
....+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46679999999999999999988653
No 498
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.24 E-value=0.0047 Score=49.76 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 456789999999999999999998753
No 499
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.23 E-value=0.0036 Score=49.73 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
-++++|++||||||+++.+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999987654
No 500
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.22 E-value=0.016 Score=48.71 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....++++|++||||||++..|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
Done!