Query 024385
Match_columns 268
No_of_seqs 313 out of 2893
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 07:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.2E-31 1.8E-35 211.5 14.5 162 62-267 11-175 (216)
2 2fh5_B SR-beta, signal recogni 100.0 2.4E-29 8.1E-34 201.8 16.0 198 62-266 5-214 (214)
3 1zj6_A ADP-ribosylation factor 100.0 5.1E-28 1.7E-32 190.0 18.6 164 61-267 13-177 (187)
4 1f6b_A SAR1; gtpases, N-termin 100.0 4.8E-28 1.7E-32 192.1 16.1 173 62-266 23-197 (198)
5 1upt_A ARL1, ADP-ribosylation 100.0 5.9E-28 2E-32 186.4 15.8 163 62-267 5-168 (171)
6 1m2o_B GTP-binding protein SAR 100.0 1.4E-27 4.7E-32 188.2 18.1 169 62-266 21-190 (190)
7 4bas_A ADP-ribosylation factor 100.0 8.4E-28 2.9E-32 190.2 16.6 167 61-266 14-187 (199)
8 1r8s_A ADP-ribosylation factor 100.0 5.2E-28 1.8E-32 185.5 14.8 160 65-267 1-161 (164)
9 1fzq_A ADP-ribosylation factor 100.0 8.1E-28 2.8E-32 188.0 16.0 163 62-267 14-177 (181)
10 2h17_A ADP-ribosylation factor 100.0 1.3E-27 4.5E-32 186.7 16.7 162 62-266 19-181 (181)
11 2b6h_A ADP-ribosylation factor 100.0 6.5E-28 2.2E-32 190.4 15.1 164 61-267 26-190 (192)
12 1zd9_A ADP-ribosylation factor 100.0 6.6E-28 2.3E-32 189.6 14.8 164 62-267 20-184 (188)
13 1ksh_A ARF-like protein 2; sma 100.0 7.3E-28 2.5E-32 188.8 14.7 162 62-266 16-178 (186)
14 2h57_A ADP-ribosylation factor 100.0 1.7E-27 5.6E-32 187.5 16.2 165 62-267 19-186 (190)
15 1ek0_A Protein (GTP-binding pr 100.0 2.6E-28 9E-33 188.0 11.1 164 64-267 3-168 (170)
16 1moz_A ARL1, ADP-ribosylation 100.0 1.5E-27 5.3E-32 186.3 14.4 162 62-266 16-178 (183)
17 1c1y_A RAS-related protein RAP 100.0 1.8E-27 6.2E-32 182.8 14.5 161 63-266 2-165 (167)
18 1r2q_A RAS-related protein RAB 100.0 1.9E-27 6.4E-32 183.2 14.5 162 62-267 4-168 (170)
19 2x77_A ADP-ribosylation factor 99.9 2.8E-27 9.6E-32 185.9 15.3 162 62-266 20-182 (189)
20 2efe_B Small GTP-binding prote 99.9 4.2E-27 1.4E-31 183.3 16.0 162 62-267 10-174 (181)
21 2fg5_A RAB-22B, RAS-related pr 99.9 4.3E-27 1.5E-31 185.6 15.9 162 62-267 21-185 (192)
22 2g6b_A RAS-related protein RAB 99.9 2E-27 6.9E-32 185.0 13.3 162 62-266 8-172 (180)
23 1z0j_A RAB-22, RAS-related pro 99.9 3.5E-27 1.2E-31 181.8 14.0 161 63-267 5-168 (170)
24 1z08_A RAS-related protein RAB 99.9 2.6E-27 9E-32 182.5 13.3 161 62-266 4-167 (170)
25 1g16_A RAS-related protein SEC 99.9 1.7E-27 5.7E-32 183.6 12.1 161 63-266 2-163 (170)
26 3t1o_A Gliding protein MGLA; G 99.9 2.3E-27 8E-32 187.2 13.1 164 62-266 12-190 (198)
27 4dsu_A GTPase KRAS, isoform 2B 99.9 2.2E-27 7.7E-32 186.1 12.8 161 63-266 3-164 (189)
28 2hup_A RAS-related protein RAB 99.9 4.4E-27 1.5E-31 186.9 14.4 161 62-266 27-191 (201)
29 3q72_A GTP-binding protein RAD 99.9 7.1E-27 2.4E-31 179.5 14.9 158 64-266 2-162 (166)
30 1nrj_B SR-beta, signal recogni 99.9 9.1E-27 3.1E-31 187.2 16.0 195 61-266 9-218 (218)
31 2y8e_A RAB-protein 6, GH09086P 99.9 3.3E-27 1.1E-31 183.4 12.8 161 63-267 13-176 (179)
32 2ew1_A RAS-related protein RAB 99.9 4.5E-27 1.5E-31 186.9 13.8 160 63-266 25-187 (201)
33 2fu5_C RAS-related protein RAB 99.9 1.7E-27 5.8E-32 186.1 11.1 160 63-266 7-169 (183)
34 1u8z_A RAS-related protein RAL 99.9 4.3E-27 1.5E-31 180.7 13.0 160 63-266 3-165 (168)
35 3ihw_A Centg3; RAS, centaurin, 99.9 7.8E-27 2.7E-31 183.0 14.6 157 61-266 17-178 (184)
36 3tkl_A RAS-related protein RAB 99.9 5.3E-27 1.8E-31 185.2 13.3 161 63-266 15-177 (196)
37 3reg_A RHO-like small GTPase; 99.9 1.6E-27 5.6E-32 188.1 10.4 163 62-266 21-186 (194)
38 3t5g_A GTP-binding protein RHE 99.9 5.5E-27 1.9E-31 182.8 13.1 161 62-266 4-167 (181)
39 3tw8_B RAS-related protein RAB 99.9 3.9E-27 1.3E-31 183.3 12.2 160 62-266 7-169 (181)
40 2bme_A RAB4A, RAS-related prot 99.9 6.9E-27 2.4E-31 183.0 13.6 160 63-266 9-171 (186)
41 2p5s_A RAS and EF-hand domain 99.9 6.3E-27 2.2E-31 185.6 13.5 165 59-267 23-196 (199)
42 2fn4_A P23, RAS-related protei 99.9 5.1E-27 1.7E-31 182.7 12.6 161 62-266 7-170 (181)
43 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.4E-26 4.8E-31 179.7 14.9 165 62-266 5-172 (177)
44 3kkq_A RAS-related protein M-R 99.9 6.6E-27 2.3E-31 182.7 13.0 161 62-266 16-180 (183)
45 2a5j_A RAS-related protein RAB 99.9 9.5E-27 3.2E-31 183.3 13.9 160 63-266 20-182 (191)
46 1kao_A RAP2A; GTP-binding prot 99.9 5E-27 1.7E-31 180.1 12.0 160 63-266 2-164 (167)
47 1x3s_A RAS-related protein RAB 99.9 9.4E-27 3.2E-31 183.5 13.8 161 63-266 14-176 (195)
48 2nzj_A GTP-binding protein REM 99.9 1.6E-26 5.3E-31 179.0 14.7 160 63-266 3-167 (175)
49 1zbd_A Rabphilin-3A; G protein 99.9 2E-26 7E-31 183.0 15.7 160 63-266 7-169 (203)
50 1z0f_A RAB14, member RAS oncog 99.9 1.6E-26 5.4E-31 179.6 14.7 161 62-266 13-176 (179)
51 1z2a_A RAS-related protein RAB 99.9 8.7E-27 3E-31 179.2 13.0 160 62-266 3-165 (168)
52 2hxs_A RAB-26, RAS-related pro 99.9 3.9E-27 1.3E-31 183.0 11.0 164 62-267 4-172 (178)
53 2iwr_A Centaurin gamma 1; ANK 99.9 1.2E-26 4.3E-31 180.4 13.8 158 62-266 5-167 (178)
54 2oil_A CATX-8, RAS-related pro 99.9 1.4E-26 4.7E-31 182.6 14.2 160 63-266 24-186 (193)
55 2gf9_A RAS-related protein RAB 99.9 1.9E-26 6.3E-31 181.3 14.9 159 64-266 22-183 (189)
56 2bov_A RAla, RAS-related prote 99.9 1.5E-26 5.2E-31 183.9 14.5 161 62-266 12-175 (206)
57 2a9k_A RAS-related protein RAL 99.9 1.2E-26 4.2E-31 181.5 13.6 161 62-266 16-179 (187)
58 2bcg_Y Protein YP2, GTP-bindin 99.9 2.3E-26 8E-31 183.2 15.3 160 63-266 7-169 (206)
59 2atx_A Small GTP binding prote 99.9 2.3E-26 7.8E-31 181.5 14.9 167 63-266 17-191 (194)
60 4gzl_A RAS-related C3 botulinu 99.9 1.4E-26 4.7E-31 184.5 13.8 175 61-266 27-203 (204)
61 3oes_A GTPase rhebl1; small GT 99.9 6E-27 2E-31 186.0 11.6 161 62-266 22-185 (201)
62 3q3j_B RHO-related GTP-binding 99.9 1.6E-26 5.4E-31 185.6 14.1 159 62-266 25-201 (214)
63 2il1_A RAB12; G-protein, GDP, 99.9 1.1E-26 3.9E-31 183.1 13.1 162 62-266 24-188 (192)
64 3bwd_D RAC-like GTP-binding pr 99.9 7E-27 2.4E-31 182.2 11.7 164 62-266 6-179 (182)
65 1m7b_A RND3/RHOE small GTP-bin 99.9 1.4E-26 4.8E-31 181.3 13.4 120 62-191 5-125 (184)
66 3clv_A RAB5 protein, putative; 99.9 2.6E-26 9E-31 182.1 14.9 159 62-266 5-202 (208)
67 1z06_A RAS-related protein RAB 99.9 1.1E-26 3.6E-31 182.7 12.5 163 62-267 18-187 (189)
68 3cph_A RAS-related protein SEC 99.9 9.9E-27 3.4E-31 186.1 12.5 162 62-266 18-180 (213)
69 2q3h_A RAS homolog gene family 99.9 2.3E-26 7.9E-31 182.5 14.5 175 61-266 17-193 (201)
70 2ce2_X GTPase HRAS; signaling 99.9 1.8E-26 6.2E-31 176.7 13.4 160 64-266 3-163 (166)
71 3q85_A GTP-binding protein REM 99.9 1.5E-26 5.2E-31 178.2 12.9 159 65-266 3-165 (169)
72 1ky3_A GTP-binding protein YPT 99.9 3.3E-26 1.1E-30 178.2 14.6 165 62-266 6-176 (182)
73 3dz8_A RAS-related protein RAB 99.9 7E-27 2.4E-31 184.1 10.8 161 62-266 21-184 (191)
74 3c5c_A RAS-like protein 12; GD 99.9 1.5E-26 5E-31 181.8 12.5 163 61-266 18-184 (187)
75 3bc1_A RAS-related protein RAB 99.9 3.1E-26 1.1E-30 180.2 14.1 162 63-266 10-183 (195)
76 1vg8_A RAS-related protein RAB 99.9 2.4E-26 8.2E-31 183.0 13.3 165 62-266 6-173 (207)
77 2j0v_A RAC-like GTP-binding pr 99.9 1.3E-26 4.6E-31 185.4 11.6 164 62-266 7-178 (212)
78 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.3E-26 7.8E-31 179.8 12.7 173 63-266 4-178 (186)
79 2erx_A GTP-binding protein DI- 99.9 2.4E-26 8.1E-31 177.3 12.3 163 63-267 2-166 (172)
80 2o52_A RAS-related protein RAB 99.9 1.3E-26 4.6E-31 183.9 11.2 161 62-266 23-186 (200)
81 3cbq_A GTP-binding protein REM 99.9 2.2E-26 7.4E-31 182.1 12.2 162 62-266 21-186 (195)
82 2fv8_A H6, RHO-related GTP-bin 99.9 6E-26 2E-30 181.1 14.6 174 62-266 23-198 (207)
83 3cpj_B GTP-binding protein YPT 99.9 5.6E-26 1.9E-30 183.4 14.5 161 62-266 11-174 (223)
84 2gf0_A GTP-binding protein DI- 99.9 3.3E-26 1.1E-30 181.0 12.9 164 62-267 6-170 (199)
85 1gwn_A RHO-related GTP-binding 99.9 3.7E-26 1.3E-30 182.2 13.3 120 62-191 26-146 (205)
86 2g3y_A GTP-binding protein GEM 99.9 5.3E-26 1.8E-30 181.9 14.1 163 62-266 35-201 (211)
87 2atv_A RERG, RAS-like estrogen 99.9 3.9E-26 1.3E-30 180.5 13.1 166 56-266 20-189 (196)
88 3con_A GTPase NRAS; structural 99.9 3.8E-26 1.3E-30 179.5 12.8 161 62-266 19-181 (190)
89 2j1l_A RHO-related GTP-binding 99.9 4E-26 1.4E-30 183.1 13.1 174 62-266 32-207 (214)
90 2gco_A H9, RHO-related GTP-bin 99.9 4.9E-26 1.7E-30 180.8 13.4 174 62-266 23-198 (201)
91 3o47_A ADP-ribosylation factor 99.9 9.7E-26 3.3E-30 192.1 15.4 162 63-267 164-326 (329)
92 3gj0_A GTP-binding nuclear pro 99.9 6.1E-27 2.1E-31 188.7 7.3 160 62-266 13-173 (221)
93 2f7s_A C25KG, RAS-related prot 99.9 2.6E-26 9E-31 184.4 10.4 162 62-266 23-197 (217)
94 4djt_A GTP-binding nuclear pro 99.9 3.2E-26 1.1E-30 184.0 10.8 163 62-266 9-173 (218)
95 2yc2_C IFT27, small RAB-relate 99.9 3.1E-26 1E-30 182.4 9.6 163 63-266 19-190 (208)
96 2lkc_A Translation initiation 99.9 6.8E-25 2.3E-29 170.3 15.8 163 62-266 6-169 (178)
97 3llu_A RAS-related GTP-binding 99.9 7.3E-25 2.5E-29 173.3 15.5 173 61-266 17-195 (196)
98 3lvq_E ARF-GAP with SH3 domain 99.9 5.8E-25 2E-29 197.6 15.8 163 62-267 320-483 (497)
99 2cjw_A GTP-binding protein GEM 99.9 3.8E-25 1.3E-29 174.5 12.8 163 62-266 4-170 (192)
100 3l0i_B RAS-related protein RAB 99.9 5.7E-27 1.9E-31 185.9 2.0 162 63-267 32-195 (199)
101 3r7w_B Gtpase2, GTP-binding pr 99.9 1E-24 3.4E-29 183.1 12.4 168 66-268 1-174 (331)
102 3th5_A RAS-related C3 botulinu 99.9 1E-26 3.5E-31 185.1 0.0 175 61-266 27-203 (204)
103 2wji_A Ferrous iron transport 99.9 6E-25 2.1E-29 169.1 9.8 153 64-267 3-164 (165)
104 2zej_A Dardarin, leucine-rich 99.9 1.5E-25 5.2E-30 175.5 6.2 168 64-266 2-176 (184)
105 1svi_A GTP-binding protein YSX 99.9 1.4E-24 4.7E-29 171.2 11.6 160 62-267 21-194 (195)
106 2dyk_A GTP-binding protein; GT 99.9 8.2E-25 2.8E-29 167.0 9.3 152 65-267 2-161 (161)
107 2gj8_A MNME, tRNA modification 99.9 1.7E-24 5.8E-29 167.8 11.2 154 63-267 3-165 (172)
108 3iev_A GTP-binding protein ERA 99.9 3.4E-24 1.2E-28 181.0 13.2 162 62-267 8-181 (308)
109 3r7w_A Gtpase1, GTP-binding pr 99.9 4.1E-24 1.4E-28 180.5 13.4 169 63-267 2-180 (307)
110 4dhe_A Probable GTP-binding pr 99.9 3E-24 1E-28 173.0 11.6 170 62-267 27-210 (223)
111 2qu8_A Putative nucleolar GTP- 99.9 2.1E-23 7.2E-28 168.8 15.8 164 62-266 27-203 (228)
112 1wf3_A GTP-binding protein; GT 99.9 8.9E-24 3E-28 177.6 13.3 158 63-267 6-172 (301)
113 3pqc_A Probable GTP-binding pr 99.9 9E-24 3.1E-28 166.2 12.5 159 62-267 21-193 (195)
114 2wkq_A NPH1-1, RAS-related C3 99.9 1.5E-23 5.1E-28 178.7 13.6 174 62-266 153-328 (332)
115 3gee_A MNME, tRNA modification 99.9 4.9E-23 1.7E-27 182.8 15.6 157 62-266 231-396 (476)
116 2wjg_A FEOB, ferrous iron tran 99.9 1.2E-23 4.3E-28 164.7 9.4 154 63-267 6-168 (188)
117 3iby_A Ferrous iron transport 99.9 1.7E-23 5.9E-28 172.0 10.1 150 65-265 2-164 (256)
118 2f9l_A RAB11B, member RAS onco 99.9 9.5E-23 3.2E-27 161.5 13.8 159 64-266 5-166 (199)
119 3c5h_A Glucocorticoid receptor 99.9 1.2E-23 3.9E-28 173.3 8.7 165 62-266 17-253 (255)
120 3i8s_A Ferrous iron transport 99.9 1.6E-23 5.6E-28 174.0 9.1 154 63-267 2-168 (274)
121 3a1s_A Iron(II) transport prot 99.9 3.1E-23 1E-27 170.8 10.6 153 63-266 4-165 (258)
122 3b1v_A Ferrous iron uptake tra 99.9 3.9E-23 1.3E-27 171.2 9.0 152 63-266 2-162 (272)
123 1xzp_A Probable tRNA modificat 99.9 5.8E-22 2E-26 176.0 17.0 153 62-266 241-403 (482)
124 3sjy_A Translation initiation 99.9 3.4E-22 1.2E-26 174.9 14.8 173 61-268 5-192 (403)
125 1oix_A RAS-related protein RAB 99.9 4.3E-22 1.5E-26 156.8 13.8 159 64-266 29-190 (191)
126 2ged_A SR-beta, signal recogni 99.9 9E-23 3.1E-27 160.6 9.8 140 62-212 46-191 (193)
127 2hjg_A GTP-binding protein ENG 99.9 1.2E-22 3.9E-27 179.6 10.5 159 63-265 174-346 (436)
128 2cxx_A Probable GTP-binding pr 99.9 3.4E-23 1.2E-27 162.4 6.1 159 65-266 2-182 (190)
129 3dpu_A RAB family protein; roc 99.9 2.7E-22 9.3E-27 181.6 11.3 163 62-266 39-206 (535)
130 3k53_A Ferrous iron transport 99.9 2.7E-22 9.1E-27 166.6 10.2 154 63-266 2-164 (271)
131 3j2k_7 ERF3, eukaryotic polype 99.9 1.8E-21 6.2E-26 171.8 16.0 166 62-257 15-214 (439)
132 3geh_A MNME, tRNA modification 99.9 6.1E-22 2.1E-26 175.1 12.7 152 62-266 222-382 (462)
133 1mky_A Probable GTP-binding pr 99.9 2.1E-22 7.3E-27 178.0 9.3 154 65-267 2-165 (439)
134 4dcu_A GTP-binding protein ENG 99.9 2.5E-22 8.4E-27 178.5 9.1 160 63-266 194-367 (456)
135 1g7s_A Translation initiation 99.9 2.2E-21 7.5E-26 176.3 14.4 187 62-266 3-216 (594)
136 3t5d_A Septin-7; GTP-binding p 99.9 8.9E-22 3E-26 163.7 10.4 166 62-267 6-203 (274)
137 2hjg_A GTP-binding protein ENG 99.9 6.8E-22 2.3E-26 174.6 10.2 153 64-267 3-164 (436)
138 1ega_A Protein (GTP-binding pr 99.9 2.8E-21 9.4E-26 162.6 13.4 158 63-267 7-174 (301)
139 3cb4_D GTP-binding protein LEP 99.9 1.4E-21 5E-26 177.3 12.4 165 63-268 3-182 (599)
140 3izy_P Translation initiation 99.9 6.7E-23 2.3E-27 183.5 3.0 164 62-266 2-166 (537)
141 1s0u_A EIF-2-gamma, translatio 99.9 6.2E-21 2.1E-25 167.1 15.4 172 61-267 5-197 (408)
142 2ywe_A GTP-binding protein LEP 99.9 2.8E-21 9.6E-26 175.2 13.2 162 63-268 5-184 (600)
143 3tr5_A RF-3, peptide chain rel 99.9 4.3E-21 1.5E-25 172.4 14.2 122 62-193 11-150 (528)
144 2e87_A Hypothetical protein PH 99.9 1.1E-20 3.8E-25 162.8 16.2 158 62-266 165-334 (357)
145 1wb1_A Translation elongation 99.9 1.8E-21 6.1E-26 173.6 10.3 165 63-266 18-187 (482)
146 3qq5_A Small GTP-binding prote 99.8 5E-22 1.7E-26 173.6 6.6 156 62-267 32-195 (423)
147 1kk1_A EIF2gamma; initiation o 99.8 7.8E-21 2.7E-25 166.7 13.3 172 62-268 8-200 (410)
148 2c78_A Elongation factor TU-A; 99.8 1.9E-21 6.6E-26 170.2 8.5 171 62-268 9-212 (405)
149 1d2e_A Elongation factor TU (E 99.8 5.2E-21 1.8E-25 167.0 10.4 170 63-268 2-195 (397)
150 1zo1_I IF2, translation initia 99.8 5.2E-21 1.8E-25 169.9 10.0 162 62-265 2-164 (501)
151 1jny_A EF-1-alpha, elongation 99.8 1.5E-20 5E-25 166.0 12.7 174 62-268 4-225 (435)
152 2xtp_A GTPase IMAP family memb 99.8 8E-21 2.7E-25 156.7 9.4 172 62-266 20-206 (260)
153 1mky_A Probable GTP-binding pr 99.8 1.5E-20 5.2E-25 166.1 11.4 158 64-265 180-352 (439)
154 3p26_A Elongation factor 1 alp 99.8 1.9E-20 6.3E-25 167.4 11.9 162 62-257 31-227 (483)
155 4dcu_A GTP-binding protein ENG 99.8 8.7E-21 3E-25 168.5 9.2 155 62-267 21-184 (456)
156 1zun_B Sulfate adenylate trans 99.8 7E-20 2.4E-24 161.6 14.3 121 63-191 23-171 (434)
157 2elf_A Protein translation elo 99.8 2.4E-20 8.3E-25 160.8 10.0 148 66-267 23-179 (370)
158 1lnz_A SPO0B-associated GTP-bi 99.8 1.8E-20 6.3E-25 159.7 9.0 159 64-267 158-329 (342)
159 1r5b_A Eukaryotic peptide chai 99.8 6.3E-20 2.2E-24 163.1 11.9 123 62-192 41-196 (467)
160 1f60_A Elongation factor EEF1A 99.8 7.7E-20 2.6E-24 162.2 12.4 119 63-191 6-159 (458)
161 3mca_A HBS1, elongation factor 99.8 5.1E-21 1.8E-25 174.3 4.3 173 64-268 177-397 (592)
162 3izq_1 HBS1P, elongation facto 99.8 1.8E-19 6.1E-24 164.6 14.3 161 62-257 165-361 (611)
163 3lxw_A GTPase IMAP family memb 99.8 4.2E-20 1.4E-24 151.2 8.6 124 62-192 19-154 (247)
164 3avx_A Elongation factor TS, e 99.8 6.3E-20 2.2E-24 174.2 10.3 172 62-267 294-485 (1289)
165 2qtf_A Protein HFLX, GTP-bindi 99.8 1.3E-18 4.3E-23 149.7 15.2 160 64-266 178-352 (364)
166 2h5e_A Peptide chain release f 99.8 9.9E-19 3.4E-23 157.2 14.4 131 62-203 11-159 (529)
167 2j69_A Bacterial dynamin-like 99.8 1.9E-18 6.4E-23 160.3 16.6 165 12-192 16-245 (695)
168 2aka_B Dynamin-1; fusion prote 99.8 1.8E-19 6.3E-24 151.3 7.8 165 62-265 24-250 (299)
169 1cip_A Protein (guanine nucleo 99.8 1.3E-18 4.3E-23 148.9 12.6 122 117-265 193-341 (353)
170 3lxx_A GTPase IMAP family memb 99.8 4.3E-19 1.5E-23 144.5 9.1 127 62-196 27-164 (239)
171 2qag_A Septin-2, protein NEDD5 99.8 3E-19 1E-23 153.7 7.6 168 60-267 33-236 (361)
172 3ohm_A Guanine nucleotide-bind 99.8 2.4E-18 8.2E-23 145.1 12.0 120 117-265 167-315 (327)
173 2dy1_A Elongation factor G; tr 99.8 5.2E-18 1.8E-22 156.7 14.8 131 62-204 7-151 (665)
174 1pui_A ENGB, probable GTP-bind 99.8 1.3E-18 4.4E-23 138.6 9.2 160 62-266 24-197 (210)
175 1dar_A EF-G, elongation factor 99.8 1.7E-17 6E-22 153.7 17.1 122 62-193 10-145 (691)
176 3def_A T7I23.11 protein; chlor 99.7 1.3E-17 4.3E-22 137.6 12.8 132 62-201 34-177 (262)
177 2xtz_A Guanine nucleotide-bind 99.7 3.8E-18 1.3E-22 145.8 9.7 73 115-190 181-263 (354)
178 2rdo_7 EF-G, elongation factor 99.7 4.7E-17 1.6E-21 151.0 17.0 133 62-204 8-160 (704)
179 4fid_A G protein alpha subunit 99.7 1.2E-17 4.2E-22 141.3 10.8 72 117-191 161-242 (340)
180 3vqt_A RF-3, peptide chain rel 99.7 7.6E-18 2.6E-22 152.1 10.1 132 62-204 29-178 (548)
181 2xex_A Elongation factor G; GT 99.7 5.3E-17 1.8E-21 150.6 15.3 121 62-192 8-142 (693)
182 1jwy_B Dynamin A GTPase domain 99.7 2.4E-17 8.3E-22 139.4 11.7 71 117-193 131-214 (315)
183 1h65_A Chloroplast outer envel 99.7 4E-17 1.4E-21 135.2 11.3 139 62-208 37-187 (270)
184 1n0u_A EF-2, elongation factor 99.7 9.3E-17 3.2E-21 151.7 12.5 145 62-214 17-190 (842)
185 3p32_A Probable GTPase RV1496/ 99.7 7.6E-17 2.6E-21 138.6 10.7 110 117-266 172-282 (355)
186 1wxq_A GTP-binding protein; st 99.7 3.8E-17 1.3E-21 142.0 6.9 89 65-153 1-114 (397)
187 2www_A Methylmalonic aciduria 99.7 3.6E-16 1.2E-20 133.9 12.4 110 117-266 167-277 (349)
188 2qnr_A Septin-2, protein NEDD5 99.7 5.2E-17 1.8E-21 136.4 6.3 163 62-265 16-211 (301)
189 1udx_A The GTP-binding protein 99.7 6.2E-16 2.1E-20 134.7 12.6 157 64-266 157-323 (416)
190 2x2e_A Dynamin-1; nitration, h 99.7 7.8E-17 2.7E-21 138.5 6.2 165 62-264 29-254 (353)
191 2p67_A LAO/AO transport system 99.7 4.4E-16 1.5E-20 133.1 10.5 194 21-266 21-259 (341)
192 3j25_A Tetracycline resistance 99.6 1.4E-16 4.8E-21 146.5 7.7 122 63-194 1-136 (638)
193 3t34_A Dynamin-related protein 99.6 5E-16 1.7E-20 133.8 9.5 70 117-193 136-219 (360)
194 2qpt_A EH domain-containing pr 99.6 9E-16 3.1E-20 138.7 11.0 122 63-192 64-233 (550)
195 2wsm_A Hydrogenase expression/ 99.6 2.1E-15 7.3E-20 120.9 11.2 156 62-266 28-212 (221)
196 2qag_C Septin-7; cell cycle, c 99.6 1.1E-15 3.7E-20 133.3 9.9 136 63-207 30-197 (418)
197 4fn5_A EF-G 1, elongation fact 99.6 2.6E-15 9E-20 139.8 11.6 122 63-193 12-153 (709)
198 1zcb_A G alpha I/13; GTP-bindi 99.6 3.3E-15 1.1E-19 128.2 10.9 160 73-265 156-350 (362)
199 1yrb_A ATP(GTP)binding protein 99.6 2.8E-15 9.5E-20 123.4 7.1 139 117-266 109-255 (262)
200 3l82_B F-box only protein 4; T 99.6 6.2E-15 2.1E-19 114.8 8.4 108 125-267 110-222 (227)
201 1u0l_A Probable GTPase ENGC; p 99.6 2.6E-15 8.8E-20 126.1 5.4 136 79-264 32-169 (301)
202 1azs_C GS-alpha; complex (lyas 99.5 1.2E-14 3.9E-19 125.8 9.2 71 117-190 217-297 (402)
203 1jal_A YCHF protein; nucleotid 99.5 5.3E-14 1.8E-18 120.1 12.0 89 64-152 2-108 (363)
204 3zvr_A Dynamin-1; hydrolase, D 99.5 2.5E-14 8.4E-19 132.3 9.4 164 62-264 49-274 (772)
205 2dby_A GTP-binding protein; GD 99.5 1.7E-13 5.8E-18 117.6 10.4 88 65-152 2-111 (368)
206 3l2o_B F-box only protein 4; s 99.5 1.2E-13 4.2E-18 112.7 7.5 109 124-267 194-307 (312)
207 4a9a_A Ribosome-interacting GT 99.4 1.4E-13 4.9E-18 118.1 8.3 116 65-190 73-195 (376)
208 2hf9_A Probable hydrogenase ni 99.4 8E-13 2.7E-17 106.1 12.0 156 62-266 36-222 (226)
209 2qm8_A GTPase/ATPase; G protei 99.4 3.8E-13 1.3E-17 114.6 10.2 193 21-266 20-259 (337)
210 2qag_B Septin-6, protein NEDD5 99.3 1E-11 3.5E-16 108.0 8.5 119 66-193 44-192 (427)
211 2ohf_A Protein OLA1, GTP-bindi 99.2 1.7E-11 5.9E-16 105.6 6.4 92 62-153 20-129 (396)
212 2yv5_A YJEQ protein; hydrolase 99.2 6E-11 2.1E-15 99.5 7.7 110 116-264 49-165 (302)
213 3sop_A Neuronal-specific septi 99.0 1.7E-09 5.9E-14 89.0 9.9 135 65-207 3-170 (270)
214 2j37_W Signal recognition part 99.0 7.3E-09 2.5E-13 92.2 14.2 114 64-193 101-256 (504)
215 3ec1_A YQEH GTPase; atnos1, at 98.9 5.2E-11 1.8E-15 102.6 -1.2 131 63-206 161-303 (369)
216 3h2y_A GTPase family protein; 98.9 1.9E-10 6.5E-15 99.0 1.3 131 63-206 159-302 (368)
217 1tq4_A IIGP1, interferon-induc 98.9 2E-08 6.9E-13 87.3 12.8 166 62-267 67-252 (413)
218 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2.8E-09 9.6E-14 92.0 7.2 91 62-152 18-127 (392)
219 1puj_A YLQF, conserved hypothe 98.8 6.4E-09 2.2E-13 86.2 6.5 99 121-266 3-104 (282)
220 3h2y_A GTPase family protein; 98.7 1.9E-08 6.6E-13 86.5 6.3 102 126-266 55-158 (368)
221 3ec1_A YQEH GTPase; atnos1, at 98.6 3E-08 1E-12 85.3 6.1 102 126-266 57-160 (369)
222 2v3c_C SRP54, signal recogniti 98.5 4.2E-07 1.4E-11 79.6 8.9 64 117-191 181-252 (432)
223 1puj_A YLQF, conserved hypothe 98.4 2E-07 6.9E-12 77.1 5.7 60 62-129 118-177 (282)
224 3dm5_A SRP54, signal recogniti 98.4 2.7E-06 9.4E-11 74.3 11.8 65 117-191 183-253 (443)
225 3cnl_A YLQF, putative uncharac 98.4 2.6E-07 8.8E-12 75.7 4.7 58 65-130 100-157 (262)
226 3cnl_A YLQF, putative uncharac 98.2 3E-07 1E-11 75.3 1.9 93 124-265 4-98 (262)
227 3szr_A Interferon-induced GTP- 98.2 2.6E-06 8.8E-11 77.9 8.1 27 64-90 45-71 (608)
228 1f5n_A Interferon-induced guan 98.2 2E-06 6.7E-11 77.9 6.4 68 62-130 36-104 (592)
229 3kl4_A SRP54, signal recogniti 98.1 8E-06 2.7E-10 71.3 8.3 64 117-190 180-251 (433)
230 1j8m_F SRP54, signal recogniti 98.0 1.5E-05 5.3E-10 66.2 8.5 64 117-191 181-253 (297)
231 1t9h_A YLOQ, probable GTPase E 98.0 4.1E-06 1.4E-10 69.9 4.7 53 134-192 80-132 (307)
232 2xxa_A Signal recognition part 97.9 2.4E-05 8.2E-10 68.5 8.1 65 117-192 184-255 (433)
233 3e70_C DPA, signal recognition 97.7 0.00011 3.8E-09 61.9 8.0 25 62-86 127-151 (328)
234 3q5d_A Atlastin-1; G protein, 97.6 6E-05 2.1E-09 66.0 5.6 69 62-131 65-154 (447)
235 2rcn_A Probable GTPase ENGC; Y 97.6 0.00012 4.2E-09 62.2 6.9 49 137-192 127-175 (358)
236 2yhs_A FTSY, cell division pro 97.5 0.00014 4.7E-09 64.3 6.9 24 63-86 292-315 (503)
237 1bif_A 6-phosphofructo-2-kinas 97.5 2.1E-05 7.2E-10 69.7 1.0 99 62-167 37-145 (469)
238 1rj9_A FTSY, signal recognitio 97.5 0.00034 1.2E-08 58.3 8.3 23 63-85 101-123 (304)
239 1vma_A Cell division protein F 97.4 0.00025 8.5E-09 59.1 5.9 22 64-85 104-125 (306)
240 1zu4_A FTSY; GTPase, signal re 97.3 0.0017 5.7E-08 54.5 10.3 65 117-192 192-269 (320)
241 4dzz_A Plasmid partitioning pr 97.3 0.00092 3.2E-08 51.9 7.8 69 117-191 76-144 (206)
242 2yv5_A YJEQ protein; hydrolase 97.2 0.00053 1.8E-08 57.1 6.3 25 63-88 164-188 (302)
243 1t9h_A YLOQ, probable GTPase E 97.2 0.00012 3.9E-09 61.1 1.9 26 63-88 172-197 (307)
244 2ffh_A Protein (FFH); SRP54, s 97.1 0.00042 1.4E-08 60.3 4.9 64 117-191 181-251 (425)
245 2rcn_A Probable GTPase ENGC; Y 97.1 0.00045 1.5E-08 58.7 4.7 27 63-89 214-240 (358)
246 1kgd_A CASK, peripheral plasma 97.1 0.00032 1.1E-08 53.6 3.5 25 63-87 4-28 (180)
247 1lvg_A Guanylate kinase, GMP k 97.1 0.00025 8.7E-09 55.2 3.0 24 63-86 3-26 (198)
248 3ney_A 55 kDa erythrocyte memb 97.0 0.00037 1.3E-08 54.1 3.4 27 61-87 16-42 (197)
249 1ye8_A Protein THEP1, hypothet 97.0 0.00039 1.3E-08 53.2 3.2 22 66-87 2-23 (178)
250 1u0l_A Probable GTPase ENGC; p 97.0 0.00091 3.1E-08 55.6 5.4 27 63-89 168-194 (301)
251 3end_A Light-independent proto 96.9 0.0089 3.1E-07 49.5 11.3 68 117-189 157-225 (307)
252 1nij_A Hypothetical protein YJ 96.9 0.0041 1.4E-07 52.1 9.2 24 64-87 4-27 (318)
253 3cwq_A Para family chromosome 96.9 0.0033 1.1E-07 49.2 7.9 66 117-191 68-134 (209)
254 3tr0_A Guanylate kinase, GMP k 96.8 0.00075 2.6E-08 52.4 3.5 25 63-87 6-30 (205)
255 1s96_A Guanylate kinase, GMP k 96.8 0.00078 2.7E-08 53.3 3.5 26 62-87 14-39 (219)
256 1z6g_A Guanylate kinase; struc 96.8 0.0007 2.4E-08 53.5 3.2 26 62-87 21-46 (218)
257 1zp6_A Hypothetical protein AT 96.8 0.00077 2.6E-08 51.7 3.3 25 63-87 8-32 (191)
258 1znw_A Guanylate kinase, GMP k 96.7 0.00088 3E-08 52.4 3.4 26 62-87 18-43 (207)
259 3a00_A Guanylate kinase, GMP k 96.7 0.00076 2.6E-08 51.8 3.0 22 66-87 3-24 (186)
260 3c8u_A Fructokinase; YP_612366 96.7 0.0007 2.4E-08 53.0 2.8 25 62-86 20-44 (208)
261 3tau_A Guanylate kinase, GMP k 96.7 0.00098 3.4E-08 52.2 3.5 26 62-87 6-31 (208)
262 3bfv_A CAPA1, CAPB2, membrane 96.7 0.025 8.6E-07 46.0 12.1 65 117-190 192-257 (271)
263 3la6_A Tyrosine-protein kinase 96.7 0.12 4.1E-06 42.3 16.3 67 117-191 202-268 (286)
264 4gp7_A Metallophosphoesterase; 96.7 0.00071 2.4E-08 51.3 2.5 24 63-86 8-31 (171)
265 1ex7_A Guanylate kinase; subst 96.6 0.001 3.5E-08 51.2 3.0 21 67-87 4-24 (186)
266 2j41_A Guanylate kinase; GMP, 96.6 0.0013 4.3E-08 51.1 3.5 26 63-88 5-30 (207)
267 2qor_A Guanylate kinase; phosp 96.6 0.0014 4.7E-08 51.1 3.4 25 63-87 11-35 (204)
268 3tif_A Uncharacterized ABC tra 96.5 0.0015 5.2E-08 52.2 3.4 27 62-88 29-55 (235)
269 2chg_A Replication factor C sm 96.5 0.0064 2.2E-07 47.2 7.1 24 63-86 37-60 (226)
270 3asz_A Uridine kinase; cytidin 96.5 0.0013 4.5E-08 51.3 3.0 25 62-86 4-28 (211)
271 4eun_A Thermoresistant glucoki 96.5 0.0017 5.7E-08 50.4 3.5 25 62-86 27-51 (200)
272 1kag_A SKI, shikimate kinase I 96.5 0.0015 5.1E-08 49.2 3.1 23 64-86 4-26 (173)
273 2pcj_A ABC transporter, lipopr 96.5 0.0017 5.9E-08 51.5 3.4 26 62-87 28-53 (224)
274 1htw_A HI0065; nucleotide-bind 96.4 0.0017 5.9E-08 48.5 3.1 27 62-88 31-57 (158)
275 2v9p_A Replication protein E1; 96.4 0.0018 6.2E-08 53.8 3.4 26 61-86 123-148 (305)
276 3kb2_A SPBC2 prophage-derived 96.4 0.0018 6.1E-08 48.6 3.1 22 65-86 2-23 (173)
277 2bbw_A Adenylate kinase 4, AK4 96.4 0.0021 7.3E-08 51.5 3.7 23 63-85 26-48 (246)
278 2cbz_A Multidrug resistance-as 96.4 0.002 6.8E-08 51.6 3.4 27 62-88 29-55 (237)
279 3lw7_A Adenylate kinase relate 96.4 0.0019 6.6E-08 48.4 3.2 20 65-84 2-21 (179)
280 1np6_A Molybdopterin-guanine d 96.4 0.0022 7.6E-08 48.7 3.5 25 63-87 5-29 (174)
281 3vaa_A Shikimate kinase, SK; s 96.4 0.0021 7.3E-08 49.8 3.5 25 62-86 23-47 (199)
282 3uie_A Adenylyl-sulfate kinase 96.4 0.0023 7.8E-08 49.6 3.6 25 62-86 23-47 (200)
283 2onk_A Molybdate/tungstate ABC 96.4 0.0019 6.5E-08 51.8 3.1 24 65-88 25-48 (240)
284 3gfo_A Cobalt import ATP-bindi 96.4 0.0022 7.4E-08 52.6 3.4 26 62-87 32-57 (275)
285 2bdt_A BH3686; alpha-beta prot 96.3 0.0018 6.2E-08 49.6 2.8 21 66-86 4-24 (189)
286 3cio_A ETK, tyrosine-protein k 96.3 0.06 2.1E-06 44.5 12.2 65 117-190 214-279 (299)
287 1b0u_A Histidine permease; ABC 96.3 0.0023 7.9E-08 52.0 3.5 27 62-88 30-56 (262)
288 2pze_A Cystic fibrosis transme 96.3 0.0023 7.8E-08 50.9 3.4 27 62-88 32-58 (229)
289 3t61_A Gluconokinase; PSI-biol 96.3 0.0022 7.5E-08 49.7 3.2 24 63-86 17-40 (202)
290 1sgw_A Putative ABC transporte 96.3 0.0022 7.4E-08 50.5 3.2 26 63-88 34-59 (214)
291 4ido_A Atlastin-1; GTPase, GTP 96.3 0.007 2.4E-07 52.8 6.7 67 62-130 65-153 (457)
292 2ff7_A Alpha-hemolysin translo 96.3 0.0022 7.7E-08 51.6 3.4 27 62-88 33-59 (247)
293 2i3b_A HCR-ntpase, human cance 96.3 0.002 6.7E-08 49.8 2.8 21 66-86 3-23 (189)
294 3ec2_A DNA replication protein 96.3 0.0015 5E-08 49.8 2.1 26 62-87 36-61 (180)
295 2eyu_A Twitching motility prot 96.3 0.0021 7.1E-08 52.3 3.1 25 62-86 23-47 (261)
296 1knq_A Gluconate kinase; ALFA/ 96.3 0.0022 7.5E-08 48.4 3.0 24 63-86 7-30 (175)
297 4g1u_C Hemin import ATP-bindin 96.3 0.0024 8.3E-08 52.0 3.4 26 62-87 35-60 (266)
298 1g6h_A High-affinity branched- 96.3 0.0024 8.3E-08 51.8 3.4 27 62-88 31-57 (257)
299 1mv5_A LMRA, multidrug resista 96.3 0.0023 7.7E-08 51.5 3.1 26 62-87 26-51 (243)
300 2ghi_A Transport protein; mult 96.3 0.0026 8.7E-08 51.7 3.4 26 62-87 44-69 (260)
301 2olj_A Amino acid ABC transpor 96.3 0.0027 9.1E-08 51.7 3.5 26 62-87 48-73 (263)
302 1ly1_A Polynucleotide kinase; 96.3 0.0022 7.7E-08 48.4 2.9 22 65-86 3-24 (181)
303 3lnc_A Guanylate kinase, GMP k 96.3 0.0018 6E-08 51.5 2.4 26 62-87 25-51 (231)
304 2qi9_C Vitamin B12 import ATP- 96.2 0.0027 9.4E-08 51.2 3.4 27 62-88 24-50 (249)
305 1ji0_A ABC transporter; ATP bi 96.2 0.0027 9.4E-08 50.9 3.4 27 62-88 30-56 (240)
306 2zu0_C Probable ATP-dependent 96.2 0.0031 1.1E-07 51.4 3.7 26 62-87 44-69 (267)
307 2d2e_A SUFC protein; ABC-ATPas 96.2 0.003 1E-07 51.0 3.6 26 62-87 27-52 (250)
308 2ixe_A Antigen peptide transpo 96.2 0.0028 9.7E-08 51.8 3.4 27 62-88 43-69 (271)
309 1vpl_A ABC transporter, ATP-bi 96.2 0.003 1E-07 51.2 3.5 27 62-88 39-65 (256)
310 2if2_A Dephospho-COA kinase; a 96.2 0.0028 9.7E-08 49.1 3.3 22 65-86 2-23 (204)
311 1qhx_A CPT, protein (chloramph 96.2 0.0033 1.1E-07 47.5 3.6 23 64-86 3-25 (178)
312 1tue_A Replication protein E1; 96.2 0.015 5.2E-07 45.2 7.3 24 63-86 57-80 (212)
313 3aez_A Pantothenate kinase; tr 96.2 0.0026 8.8E-08 53.1 3.2 25 62-86 88-112 (312)
314 1y63_A LMAJ004144AAA protein; 96.2 0.0028 9.6E-08 48.5 3.1 26 62-87 8-33 (184)
315 2ihy_A ABC transporter, ATP-bi 96.2 0.0029 1E-07 51.9 3.4 27 62-88 45-71 (279)
316 1cke_A CK, MSSA, protein (cyti 96.2 0.0032 1.1E-07 49.7 3.5 23 64-86 5-27 (227)
317 1kht_A Adenylate kinase; phosp 96.2 0.0031 1.1E-07 48.1 3.3 23 64-86 3-25 (192)
318 2f1r_A Molybdopterin-guanine d 96.2 0.0015 5.2E-08 49.5 1.5 23 65-87 3-25 (171)
319 2rhm_A Putative kinase; P-loop 96.2 0.0029 9.9E-08 48.4 3.1 24 63-86 4-27 (193)
320 3b85_A Phosphate starvation-in 96.2 0.0022 7.4E-08 50.3 2.4 25 63-87 21-45 (208)
321 3trf_A Shikimate kinase, SK; a 96.2 0.0032 1.1E-07 48.0 3.3 24 63-86 4-27 (185)
322 3jvv_A Twitching mobility prot 96.2 0.0036 1.2E-07 53.3 3.9 25 62-86 121-145 (356)
323 1aky_A Adenylate kinase; ATP:A 96.1 0.0034 1.2E-07 49.4 3.5 24 63-86 3-26 (220)
324 1nks_A Adenylate kinase; therm 96.1 0.0029 9.9E-08 48.3 3.0 22 65-86 2-23 (194)
325 1xjc_A MOBB protein homolog; s 96.1 0.0036 1.2E-07 47.3 3.3 24 63-86 3-26 (169)
326 2nq2_C Hypothetical ABC transp 96.1 0.0033 1.1E-07 50.8 3.4 27 62-88 29-55 (253)
327 2yz2_A Putative ABC transporte 96.1 0.0034 1.2E-07 51.1 3.4 26 62-87 31-56 (266)
328 3nh6_A ATP-binding cassette SU 96.1 0.0024 8.3E-08 53.1 2.5 26 62-87 78-103 (306)
329 2qt1_A Nicotinamide riboside k 96.1 0.0035 1.2E-07 48.8 3.3 26 62-87 19-44 (207)
330 2ehv_A Hypothetical protein PH 96.1 0.004 1.4E-07 49.7 3.6 24 62-85 28-51 (251)
331 3iij_A Coilin-interacting nucl 96.1 0.0039 1.3E-07 47.3 3.3 24 63-86 10-33 (180)
332 1jbk_A CLPB protein; beta barr 96.1 0.0082 2.8E-07 45.3 5.2 26 62-87 41-66 (195)
333 4a74_A DNA repair and recombin 96.0 0.0031 1.1E-07 49.7 2.8 25 62-86 23-47 (231)
334 2jeo_A Uridine-cytidine kinase 96.0 0.0035 1.2E-07 50.3 3.1 25 62-86 23-47 (245)
335 3cm0_A Adenylate kinase; ATP-b 96.0 0.0031 1.1E-07 48.0 2.6 23 64-86 4-26 (186)
336 1zd8_A GTP:AMP phosphotransfer 96.0 0.0041 1.4E-07 49.2 3.3 24 63-86 6-29 (227)
337 2v54_A DTMP kinase, thymidylat 96.0 0.0046 1.6E-07 47.8 3.6 25 63-87 3-27 (204)
338 2bbs_A Cystic fibrosis transme 96.0 0.0042 1.4E-07 51.3 3.4 26 63-88 63-88 (290)
339 2c95_A Adenylate kinase 1; tra 96.0 0.0045 1.6E-07 47.4 3.5 25 62-86 7-31 (196)
340 3fb4_A Adenylate kinase; psych 96.0 0.004 1.4E-07 48.7 3.1 21 66-86 2-22 (216)
341 2gza_A Type IV secretion syste 96.0 0.0045 1.5E-07 52.8 3.7 27 62-88 173-199 (361)
342 2jaq_A Deoxyguanosine kinase; 96.0 0.0042 1.4E-07 47.9 3.2 21 66-86 2-22 (205)
343 1jjv_A Dephospho-COA kinase; P 96.0 0.0042 1.4E-07 48.2 3.1 22 65-86 3-24 (206)
344 1zak_A Adenylate kinase; ATP:A 95.9 0.0043 1.5E-07 48.8 3.2 24 63-86 4-27 (222)
345 2pjz_A Hypothetical protein ST 95.9 0.004 1.4E-07 50.7 3.1 25 64-88 30-54 (263)
346 3fvq_A Fe(3+) IONS import ATP- 95.9 0.005 1.7E-07 52.3 3.6 26 63-88 29-54 (359)
347 3dl0_A Adenylate kinase; phosp 95.9 0.0045 1.5E-07 48.5 3.1 21 66-86 2-22 (216)
348 2wwf_A Thymidilate kinase, put 95.9 0.0051 1.8E-07 47.8 3.5 24 63-86 9-32 (212)
349 1lw7_A Transcriptional regulat 95.9 0.0037 1.3E-07 53.3 2.8 24 64-87 170-193 (365)
350 2plr_A DTMP kinase, probable t 95.9 0.0045 1.6E-07 48.0 3.1 23 64-86 4-26 (213)
351 3tqc_A Pantothenate kinase; bi 95.9 0.007 2.4E-07 50.6 4.4 22 64-85 92-113 (321)
352 2cdn_A Adenylate kinase; phosp 95.9 0.0052 1.8E-07 47.5 3.4 25 62-86 18-42 (201)
353 1nn5_A Similar to deoxythymidy 95.9 0.0054 1.8E-07 47.8 3.5 24 63-86 8-31 (215)
354 1tev_A UMP-CMP kinase; ploop, 95.8 0.0047 1.6E-07 47.2 3.0 23 64-86 3-25 (196)
355 2ewv_A Twitching motility prot 95.8 0.0054 1.9E-07 52.5 3.6 25 62-86 134-158 (372)
356 1rz3_A Hypothetical protein rb 95.8 0.0048 1.6E-07 47.9 3.0 25 62-86 20-44 (201)
357 3tui_C Methionine import ATP-b 95.8 0.0058 2E-07 52.0 3.7 27 62-88 52-78 (366)
358 2kjq_A DNAA-related protein; s 95.8 0.0042 1.5E-07 45.8 2.6 25 63-87 35-59 (149)
359 3be4_A Adenylate kinase; malar 95.8 0.0055 1.9E-07 48.1 3.4 24 63-86 4-27 (217)
360 2yvu_A Probable adenylyl-sulfa 95.8 0.0041 1.4E-07 47.5 2.5 25 62-86 11-35 (186)
361 3tlx_A Adenylate kinase 2; str 95.8 0.0052 1.8E-07 49.3 3.2 25 62-86 27-51 (243)
362 2vli_A Antibiotic resistance p 95.8 0.004 1.4E-07 47.2 2.4 24 63-86 4-27 (183)
363 2it1_A 362AA long hypothetical 95.8 0.0061 2.1E-07 51.9 3.7 26 63-88 28-53 (362)
364 2yyz_A Sugar ABC transporter, 95.8 0.006 2.1E-07 51.9 3.7 26 63-88 28-53 (359)
365 1gvn_B Zeta; postsegregational 95.8 0.0048 1.6E-07 50.9 3.0 24 63-86 32-55 (287)
366 4e22_A Cytidylate kinase; P-lo 95.8 0.006 2E-07 49.2 3.5 24 62-85 25-48 (252)
367 1sq5_A Pantothenate kinase; P- 95.8 0.0051 1.7E-07 51.2 3.1 25 62-86 78-102 (308)
368 1z47_A CYSA, putative ABC-tran 95.8 0.0059 2E-07 51.8 3.6 27 62-88 39-65 (355)
369 3rlf_A Maltose/maltodextrin im 95.8 0.0063 2.2E-07 52.1 3.7 26 63-88 28-53 (381)
370 1ukz_A Uridylate kinase; trans 95.8 0.0056 1.9E-07 47.4 3.2 25 62-86 13-37 (203)
371 1odf_A YGR205W, hypothetical 3 95.8 0.0052 1.8E-07 50.7 3.1 25 62-86 29-53 (290)
372 1via_A Shikimate kinase; struc 95.7 0.0057 1.9E-07 46.2 3.0 22 65-86 5-26 (175)
373 1v43_A Sugar-binding transport 95.7 0.0069 2.4E-07 51.8 3.7 27 62-88 35-61 (372)
374 2p65_A Hypothetical protein PF 95.7 0.0098 3.4E-07 44.8 4.3 26 62-87 41-66 (187)
375 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0058 2E-07 49.5 3.1 24 63-86 3-26 (260)
376 2x8a_A Nuclear valosin-contain 95.7 0.0052 1.8E-07 50.2 2.8 23 65-87 45-67 (274)
377 3b9q_A Chloroplast SRP recepto 95.7 0.0059 2E-07 50.7 3.1 23 64-86 100-122 (302)
378 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0053 1.8E-07 51.7 2.8 25 63-87 170-194 (330)
379 1g29_1 MALK, maltose transport 95.7 0.007 2.4E-07 51.8 3.6 26 63-88 28-53 (372)
380 2bwj_A Adenylate kinase 5; pho 95.6 0.0072 2.5E-07 46.4 3.3 24 63-86 11-34 (199)
381 1uf9_A TT1252 protein; P-loop, 95.6 0.0069 2.4E-07 46.7 3.2 26 62-87 6-31 (203)
382 1e4v_A Adenylate kinase; trans 95.6 0.0069 2.4E-07 47.4 3.1 21 66-86 2-22 (214)
383 1svm_A Large T antigen; AAA+ f 95.6 0.059 2E-06 46.1 9.1 25 62-86 167-191 (377)
384 3d31_A Sulfate/molybdate ABC t 95.6 0.0059 2E-07 51.7 2.8 26 63-88 25-50 (348)
385 3gd7_A Fusion complex of cysti 95.6 0.0078 2.7E-07 51.8 3.6 26 62-87 45-70 (390)
386 2oap_1 GSPE-2, type II secreti 95.6 0.01 3.5E-07 53.0 4.5 25 63-87 259-283 (511)
387 1e6c_A Shikimate kinase; phosp 95.6 0.0074 2.5E-07 45.2 3.1 22 65-86 3-24 (173)
388 2pez_A Bifunctional 3'-phospho 95.6 0.0073 2.5E-07 45.7 3.1 24 63-86 4-27 (179)
389 1ixz_A ATP-dependent metallopr 95.6 0.0063 2.2E-07 48.9 2.9 24 64-87 49-72 (254)
390 1gtv_A TMK, thymidylate kinase 95.5 0.0034 1.1E-07 49.0 1.1 21 66-86 2-22 (214)
391 2pt5_A Shikimate kinase, SK; a 95.5 0.0081 2.8E-07 44.8 3.2 21 66-86 2-22 (168)
392 2iyv_A Shikimate kinase, SK; t 95.5 0.0075 2.6E-07 45.8 3.0 22 65-86 3-24 (184)
393 2vp4_A Deoxynucleoside kinase; 95.5 0.0058 2E-07 48.5 2.5 26 62-87 18-43 (230)
394 1ak2_A Adenylate kinase isoenz 95.5 0.009 3.1E-07 47.4 3.6 25 62-86 14-38 (233)
395 1p9r_A General secretion pathw 95.5 0.0094 3.2E-07 51.8 3.8 25 62-86 165-189 (418)
396 2z0h_A DTMP kinase, thymidylat 95.5 0.0074 2.5E-07 46.2 2.8 21 66-86 2-22 (197)
397 3sr0_A Adenylate kinase; phosp 95.5 0.0089 3E-07 46.7 3.3 21 66-86 2-22 (206)
398 1qf9_A UMP/CMP kinase, protein 95.5 0.0085 2.9E-07 45.7 3.1 23 64-86 6-28 (194)
399 2npi_A Protein CLP1; CLP1-PCF1 95.5 0.0089 3.1E-07 52.6 3.6 27 61-87 135-161 (460)
400 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.009 3.1E-07 46.9 3.3 24 63-86 22-45 (235)
401 3bos_A Putative DNA replicatio 95.4 0.021 7.3E-07 44.9 5.5 24 63-86 51-74 (242)
402 2ze6_A Isopentenyl transferase 95.4 0.0077 2.6E-07 48.6 2.9 21 66-86 3-23 (253)
403 2pbr_A DTMP kinase, thymidylat 95.4 0.009 3.1E-07 45.6 3.1 21 66-86 2-22 (195)
404 3umf_A Adenylate kinase; rossm 95.4 0.0098 3.4E-07 46.8 3.3 23 64-86 29-51 (217)
405 1oxx_K GLCV, glucose, ABC tran 95.4 0.0057 1.9E-07 51.9 2.1 27 62-88 29-55 (353)
406 2xb4_A Adenylate kinase; ATP-b 95.4 0.0094 3.2E-07 47.0 3.2 21 66-86 2-22 (223)
407 3te6_A Regulatory protein SIR3 95.4 0.053 1.8E-06 45.2 7.9 27 61-87 42-68 (318)
408 1vht_A Dephospho-COA kinase; s 95.4 0.0096 3.3E-07 46.6 3.2 23 64-86 4-26 (218)
409 2p5t_B PEZT; postsegregational 95.4 0.0057 2E-07 49.3 1.9 24 63-86 31-54 (253)
410 1m7g_A Adenylylsulfate kinase; 95.3 0.013 4.3E-07 45.8 3.7 25 62-86 23-47 (211)
411 2og2_A Putative signal recogni 95.3 0.009 3.1E-07 50.8 3.1 23 64-86 157-179 (359)
412 3kta_A Chromosome segregation 95.3 0.01 3.5E-07 45.0 3.0 21 66-86 28-48 (182)
413 1zcb_A G alpha I/13; GTP-bindi 95.3 0.0097 3.3E-07 50.7 3.1 23 62-84 31-53 (362)
414 1in4_A RUVB, holliday junction 95.3 0.011 3.7E-07 49.7 3.4 24 64-87 51-74 (334)
415 2b8t_A Thymidine kinase; deoxy 95.3 0.03 1E-06 44.2 5.7 43 142-192 89-131 (223)
416 4eaq_A DTMP kinase, thymidylat 95.3 0.011 3.7E-07 47.0 3.2 24 63-86 25-48 (229)
417 1iy2_A ATP-dependent metallopr 95.2 0.0094 3.2E-07 48.7 2.9 23 65-87 74-96 (278)
418 3r20_A Cytidylate kinase; stru 95.2 0.012 4.1E-07 46.9 3.4 24 63-86 8-31 (233)
419 1lv7_A FTSH; alpha/beta domain 95.2 0.013 4.3E-07 47.2 3.5 24 63-86 44-67 (257)
420 3nwj_A ATSK2; P loop, shikimat 95.2 0.011 3.8E-07 47.6 3.2 23 64-86 48-70 (250)
421 2cvh_A DNA repair and recombin 95.2 0.013 4.4E-07 45.7 3.5 25 62-86 18-42 (220)
422 2f6r_A COA synthase, bifunctio 95.1 0.011 3.9E-07 48.4 3.0 24 63-86 74-97 (281)
423 3syl_A Protein CBBX; photosynt 95.1 0.032 1.1E-06 46.0 5.8 25 62-86 65-89 (309)
424 1cr0_A DNA primase/helicase; R 95.1 0.014 4.6E-07 48.1 3.4 25 62-86 33-57 (296)
425 1n0w_A DNA repair protein RAD5 95.1 0.014 4.8E-07 46.2 3.4 26 62-87 22-47 (243)
426 1c9k_A COBU, adenosylcobinamid 95.1 0.031 1.1E-06 42.5 5.1 21 67-87 2-22 (180)
427 3h4m_A Proteasome-activating n 95.1 0.016 5.6E-07 47.2 3.8 26 62-87 49-74 (285)
428 1zuh_A Shikimate kinase; alpha 95.0 0.014 4.8E-07 43.6 3.1 24 63-86 6-29 (168)
429 1uj2_A Uridine-cytidine kinase 95.0 0.013 4.5E-07 47.1 3.1 25 62-86 20-44 (252)
430 3b60_A Lipid A export ATP-bind 95.0 0.014 4.7E-07 53.1 3.5 25 63-87 368-392 (582)
431 2w58_A DNAI, primosome compone 95.0 0.015 5.3E-07 44.8 3.3 22 65-86 55-76 (202)
432 3n70_A Transport activator; si 95.0 0.017 5.8E-07 42.1 3.3 26 62-87 22-47 (145)
433 3b5x_A Lipid A export ATP-bind 94.9 0.015 5.3E-07 52.7 3.6 26 62-87 367-392 (582)
434 2obl_A ESCN; ATPase, hydrolase 94.9 0.016 5.4E-07 49.1 3.4 27 62-88 69-95 (347)
435 3b9p_A CG5977-PA, isoform A; A 94.9 0.017 5.9E-07 47.4 3.4 25 63-87 53-77 (297)
436 1yqt_A RNAse L inhibitor; ATP- 94.8 0.019 6.5E-07 51.6 3.7 26 63-88 46-71 (538)
437 2qz4_A Paraplegin; AAA+, SPG7, 94.8 0.02 6.7E-07 46.0 3.5 25 62-86 37-61 (262)
438 1f2t_A RAD50 ABC-ATPase; DNA d 94.8 0.018 6.3E-07 42.3 3.0 20 66-85 25-44 (149)
439 3t15_A Ribulose bisphosphate c 94.7 0.02 6.9E-07 47.2 3.5 24 63-86 35-58 (293)
440 2px0_A Flagellar biosynthesis 94.7 0.02 6.8E-07 47.3 3.4 65 117-191 183-253 (296)
441 2yl4_A ATP-binding cassette SU 94.7 0.014 4.8E-07 53.2 2.7 25 63-87 369-393 (595)
442 1xp8_A RECA protein, recombina 94.7 0.045 1.5E-06 46.6 5.7 25 62-86 72-96 (366)
443 3qf4_B Uncharacterized ABC tra 94.7 0.015 5.2E-07 53.0 2.9 25 63-87 380-404 (598)
444 3euj_A Chromosome partition pr 94.7 0.016 5.5E-07 51.2 2.9 22 65-86 30-51 (483)
445 2qmh_A HPR kinase/phosphorylas 94.7 0.02 7E-07 44.2 3.1 26 63-88 33-58 (205)
446 2dpy_A FLII, flagellum-specifi 94.7 0.02 6.9E-07 50.0 3.5 27 62-88 155-181 (438)
447 3cf0_A Transitional endoplasmi 94.7 0.026 8.8E-07 46.7 4.0 26 62-87 47-72 (301)
448 1fnn_A CDC6P, cell division co 94.6 0.045 1.5E-06 46.5 5.6 22 66-87 46-67 (389)
449 1ltq_A Polynucleotide kinase; 94.6 0.018 6E-07 47.5 2.9 22 65-86 3-24 (301)
450 1nlf_A Regulatory protein REPA 94.6 0.022 7.4E-07 46.5 3.3 25 62-86 28-52 (279)
451 4b4t_M 26S protease regulatory 94.5 0.026 8.9E-07 49.1 3.9 26 62-87 213-238 (434)
452 4a82_A Cystic fibrosis transme 94.5 0.013 4.5E-07 53.2 2.1 25 63-87 366-390 (578)
453 1njg_A DNA polymerase III subu 94.5 0.019 6.5E-07 45.0 2.8 23 64-86 45-67 (250)
454 1q3t_A Cytidylate kinase; nucl 94.5 0.025 8.6E-07 44.9 3.5 25 62-86 14-38 (236)
455 3j16_B RLI1P; ribosome recycli 94.4 0.025 8.7E-07 51.5 3.7 26 63-88 102-127 (608)
456 2grj_A Dephospho-COA kinase; T 94.4 0.021 7.2E-07 44.0 2.8 25 63-87 11-35 (192)
457 3qf4_A ABC transporter, ATP-bi 94.4 0.017 6E-07 52.4 2.6 24 64-87 369-392 (587)
458 1sxj_C Activator 1 40 kDa subu 94.4 0.05 1.7E-06 45.6 5.3 23 65-87 47-69 (340)
459 3qf7_A RAD50; ABC-ATPase, ATPa 94.4 0.022 7.5E-07 48.5 3.0 20 66-85 25-44 (365)
460 2qby_A CDC6 homolog 1, cell di 94.4 0.026 8.8E-07 47.9 3.5 25 62-86 43-67 (386)
461 3ea0_A ATPase, para family; al 94.3 0.2 6.7E-06 39.6 8.5 72 117-195 119-190 (245)
462 4b4t_K 26S protease regulatory 94.3 0.034 1.2E-06 48.4 4.1 25 62-86 204-228 (428)
463 4b4t_L 26S protease subunit RP 94.3 0.034 1.2E-06 48.5 4.1 26 62-87 213-238 (437)
464 2dr3_A UPF0273 protein PH0284; 94.3 0.031 1.1E-06 44.3 3.5 25 62-86 21-45 (247)
465 3ozx_A RNAse L inhibitor; ATP 94.3 0.024 8.2E-07 50.9 3.1 26 63-88 24-49 (538)
466 1ofh_A ATP-dependent HSL prote 94.3 0.03 1E-06 46.0 3.6 25 62-86 48-72 (310)
467 2qby_B CDC6 homolog 3, cell di 94.3 0.06 2.1E-06 45.7 5.6 25 62-86 43-67 (384)
468 3zvl_A Bifunctional polynucleo 94.3 0.028 9.7E-07 48.7 3.5 23 64-86 258-280 (416)
469 3co5_A Putative two-component 94.2 0.018 6E-07 42.0 1.9 26 62-87 25-50 (143)
470 1l8q_A Chromosomal replication 94.2 0.026 8.9E-07 47.0 3.1 24 63-86 36-59 (324)
471 4b4t_J 26S protease regulatory 94.2 0.036 1.2E-06 47.7 4.0 26 62-87 180-205 (405)
472 1a7j_A Phosphoribulokinase; tr 94.2 0.015 5.2E-07 47.9 1.5 24 63-86 4-27 (290)
473 3exa_A TRNA delta(2)-isopenten 94.2 0.029 1E-06 46.6 3.2 24 64-87 3-26 (322)
474 1sxj_E Activator 1 40 kDa subu 94.2 0.022 7.5E-07 48.0 2.6 22 65-86 37-58 (354)
475 3bk7_A ABC transporter ATP-bin 94.2 0.029 1E-06 51.1 3.5 27 62-88 115-141 (607)
476 3pxg_A Negative regulator of g 94.1 0.034 1.2E-06 49.1 3.8 26 61-86 198-223 (468)
477 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.032 1.1E-06 46.7 3.4 25 63-87 44-68 (322)
478 3ozx_A RNAse L inhibitor; ATP 94.1 0.03 1E-06 50.3 3.4 26 63-88 293-318 (538)
479 1d2n_A N-ethylmaleimide-sensit 94.1 0.024 8.3E-07 45.9 2.6 25 62-86 62-86 (272)
480 3a8t_A Adenylate isopentenyltr 94.1 0.034 1.1E-06 46.7 3.5 24 64-87 40-63 (339)
481 3crm_A TRNA delta(2)-isopenten 94.0 0.031 1.1E-06 46.7 3.2 22 65-86 6-27 (323)
482 1yqt_A RNAse L inhibitor; ATP- 94.0 0.034 1.1E-06 50.0 3.6 26 63-88 311-336 (538)
483 1p5z_B DCK, deoxycytidine kina 94.0 0.019 6.7E-07 46.4 1.9 26 62-87 22-47 (263)
484 3eie_A Vacuolar protein sortin 94.0 0.035 1.2E-06 46.3 3.4 24 63-86 50-73 (322)
485 2ga8_A Hypothetical 39.9 kDa p 94.0 0.053 1.8E-06 45.8 4.5 24 63-86 23-46 (359)
486 3ake_A Cytidylate kinase; CMP 94.0 0.032 1.1E-06 43.0 3.0 21 66-86 4-24 (208)
487 3tqf_A HPR(Ser) kinase; transf 93.9 0.038 1.3E-06 41.7 3.1 26 63-88 15-40 (181)
488 2ocp_A DGK, deoxyguanosine kin 93.9 0.035 1.2E-06 44.2 3.1 24 64-87 2-25 (241)
489 3bk7_A ABC transporter ATP-bin 93.8 0.039 1.3E-06 50.3 3.6 26 63-88 381-406 (607)
490 3d3q_A TRNA delta(2)-isopenten 93.8 0.032 1.1E-06 46.9 2.8 22 65-86 8-29 (340)
491 4fcw_A Chaperone protein CLPB; 93.8 0.035 1.2E-06 45.7 3.1 23 65-87 48-70 (311)
492 1pzn_A RAD51, DNA repair and r 93.8 0.033 1.1E-06 47.2 2.9 26 62-87 129-154 (349)
493 3foz_A TRNA delta(2)-isopenten 93.7 0.038 1.3E-06 45.8 3.1 24 64-87 10-33 (316)
494 2v1u_A Cell division control p 93.7 0.034 1.2E-06 47.2 2.8 26 62-87 42-67 (387)
495 3v9p_A DTMP kinase, thymidylat 93.7 0.038 1.3E-06 43.7 2.9 24 63-86 24-47 (227)
496 3cr8_A Sulfate adenylyltranfer 93.6 0.026 8.9E-07 50.8 2.1 26 62-87 367-392 (552)
497 3e2i_A Thymidine kinase; Zn-bi 93.6 0.28 9.5E-06 38.3 7.7 38 145-191 104-142 (219)
498 2r62_A Cell division protease 93.6 0.022 7.4E-07 46.0 1.5 24 63-86 43-66 (268)
499 4b4t_I 26S protease regulatory 93.6 0.06 2.1E-06 46.7 4.2 26 62-87 214-239 (437)
500 2iw3_A Elongation factor 3A; a 93.6 0.044 1.5E-06 52.5 3.7 27 63-89 460-486 (986)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.97 E-value=5.2e-31 Score=211.54 Aligned_cols=162 Identities=19% Similarity=0.238 Sum_probs=124.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.+||+++|++|||||||+++++.+.|...+.+|+. ..........++..+.+.||||+|+++|+..+..|++.+
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig----~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a 86 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG----IDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDS 86 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTC
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc----eEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccc
Confidence 4678999999999999999999999998665544443 223333455677778999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+++++|||.++. +++..+..|+..+..... .++|++||+||+|+...+ ..++..+. .+
T Consensus 87 ~~~ilv~di~~~-~Sf~~i~~~~~~i~~~~~---~~~piilVgNK~Dl~~~r~V~~~e~~~~-a~--------------- 146 (216)
T 4dkx_A 87 AAAVVVYDITNV-NSFQQTTKWIDDVRTERG---SDVIIMLVGNKTDLADKRQVSIEEGERK-AK--------------- 146 (216)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHT---TSSEEEEEEECTTCGGGCCSCHHHHHHH-HH---------------
T ss_pred cEEEEEeecchh-HHHHHHHHHHHHHHHhcC---CCCeEEEEeeccchHhcCcccHHHHhhH-HH---------------
Confidence 999999999998 899999999999877543 789999999999997654 33332222 11
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..++.|++|||++|. |++++++|.+.++
T Consensus 147 --------------------~~~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 147 --------------------ELNVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp --------------------HHTCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred --------------------HhCCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 224589999999999 9999999987653
No 2
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=2.4e-29 Score=201.76 Aligned_cols=198 Identities=34% Similarity=0.545 Sum_probs=137.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCc-eeeEEEEeCCCCCCchh-hHhhhcc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGK-IKPVHLVDVPGHSRLRP-KLDEFLP 139 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~-~~~~~~~ 139 (268)
.+.++|+++|++|||||||+++++++.+...+.+ .. . .... +.+++. .+.+.+|||||+++++. .+..|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~---~-~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 77 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-IT---D-SSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS 77 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CS---C-EEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cc---e-eeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHh
Confidence 5678999999999999999999999887543321 11 1 1111 233332 37899999999999888 7888999
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cccc
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS-AVSE 218 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~ 218 (268)
.+|++|+|+|+++...++.....++..++........+.|+++|+||+|+......+.+.+.+.+.+..+..... +++.
T Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~ 157 (214)
T 2fh5_B 78 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPST 157 (214)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccc
Confidence 999999999998842245666677766654321123579999999999999888888888888888776544332 2333
Q ss_pred ccccCc--ccCCCCCCCeeeccCCceeEEEEeeeccC------C-chhHHHHHHhhc
Q 024385 219 ADVTND--FTLGIPGQAFSFSQCHNKVSVAEASGLTG------E-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~--~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g------~-i~~l~~~l~~~~ 266 (268)
.+.... ...+..+..|.|++++.+++|++|||++| . ++++++||.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 158 LDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 222222 23444556777877777899999999999 7 999999998764
No 3
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.1e-28 Score=189.95 Aligned_cols=164 Identities=22% Similarity=0.351 Sum_probs=122.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.++..+|+++|++|||||||++++.++.+. .+.++....... +..++ +.+.+|||||+++++..+..+++.
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~------~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ 83 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEE------IVINN--TRFLMWDIGGQESLRSSWNTYYTN 83 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEE------EEETT--EEEEEEECCC----CGGGHHHHTT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEE------EEECC--EEEEEEECCCCHhHHHHHHHHhcC
Confidence 467899999999999999999999988764 222332222111 22233 789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++|+|+|+++. +++.....|+..+..... ..+.|+++|+||+|+......+++.+.+... .
T Consensus 84 ~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~--------~------ 146 (187)
T 1zj6_A 84 TEFVIVVVDSTDR-ERISVTREELYKMLAHED--LRKAGLLIFANKQDVKECMTVAEISQFLKLT--------S------ 146 (187)
T ss_dssp CCEEEEEEETTCT-TTHHHHHHHHHHHHTSGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTGG--------G------
T ss_pred CCEEEEEEeCCCH-HHHHHHHHHHHHHHhchh--hCCCeEEEEEECCCCcCCCCHHHHHHHhChh--------h------
Confidence 9999999999998 789999999999887532 2689999999999998765555443332210 0
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+ ...++++++|||++|+ ++++++||.+.++
T Consensus 147 ---------------~--~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 147 ---------------I--KDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp ---------------C--CSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred ---------------h--cCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0 0234689999999998 9999999998764
No 4
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=4.8e-28 Score=192.05 Aligned_cols=173 Identities=27% Similarity=0.404 Sum_probs=119.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.. +.++..+... .+.+++ +.+.+|||||+++++..+..+++.+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~------~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSE------ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAI 93 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE------EEEETT--EEEEEEEECC----CCGGGGGGGGC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCceeE------EEEECC--EEEEEEECCCcHhhHHHHHHHHhcC
Confidence 467899999999999999999999887642 3333333322 223344 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. +++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. . . .....
T Consensus 94 d~~i~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----~----~-~~~~~- 160 (198)
T 1f6b_A 94 NGIVFLVDCADH-ERLLESKEELDSLMTDET--IANVPILILGNKIDRPEAISEERLREMFGL----Y----G-QTTGK- 160 (198)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTSCEEEEEECTTSTTCCCHHHHHHHHTC----T----T-TCCCS-
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhCcc--cCCCcEEEEEECCCccccCCHHHHHHHhCc----c----c-ccccc-
Confidence 999999999997 789999999999887532 268999999999999865455444332211 0 0 00000
Q ss_pred cCcccCCCCCCCeeecc-CCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQ-CHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~-~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ...+.. ....+++++|||++|+ ++++++||.+.+
T Consensus 161 --------~--~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 161 --------G--SVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp --------S--CCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred --------c--ccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 0 000000 1245789999999998 999999998875
No 5
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=5.9e-28 Score=186.38 Aligned_cols=163 Identities=21% Similarity=0.353 Sum_probs=124.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.. .. ++.+... ..+.+++ ..+.+|||||++++...+..+++.+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~----~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~ 75 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TI----PTIGFNV--ETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNT 75 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CC----CCSSEEE--EEEEETT--EEEEEEEECCCGGGGGGGGGGCTTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cC----CcCccce--EEEEECC--EEEEEEECCCChhhhHHHHHHhccC
Confidence 457899999999999999999999887642 22 2222111 1122233 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..++..... .+.|+++|+||+|+......+++.+.+...
T Consensus 76 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 136 (171)
T 1upt_A 76 DAVIYVVDSCDR-DRIGISKSELVAMLEEEEL--RKAILVVFANKQDMEQAMTSSEMANSLGLP---------------- 136 (171)
T ss_dssp SEEEEEEETTCC-TTHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTCCCHHHHHHHHTGG----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhchhh--CCCEEEEEEECCCCcCCCCHHHHHHHhCch----------------
Confidence 999999999998 7899999999888775321 689999999999998766554443322100
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ...+++++++||++|+ +++++++|.+.++
T Consensus 137 --------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 137 --------------AL-KDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp --------------GC-TTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred --------------hc-cCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 00 0234689999999998 9999999988753
No 6
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=1.4e-27 Score=188.21 Aligned_cols=169 Identities=22% Similarity=0.320 Sum_probs=123.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.. +.++..+.. ..+..++ +.+.+|||||+++++..+..+++.+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~~------~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS------EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEV 91 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCEE------EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCCe------EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 466799999999999999999999987642 223333221 2233344 7899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. ..
T Consensus 92 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----------~~---- 153 (190)
T 1m2o_B 92 NGIVFLVDAADP-ERFDEARVELDALFNIAE--LKDVPFVILGNKIDAPNAVSEAELRSALGL-----------LN---- 153 (190)
T ss_dssp CEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTC-----------SS----
T ss_pred CEEEEEEECCCh-HHHHHHHHHHHHHHcchh--hcCCCEEEEEECCCCcCCCCHHHHHHHhCC-----------cc----
Confidence 999999999998 789999999998886532 268999999999999875454443322210 00
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+. + .....+++++|||++|+ ++++++||.+++
T Consensus 154 -------~~~~~~-~-~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 154 -------TTGSQR-I-EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp -------CCC----C-CSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred -------cccccc-c-cccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 000000 1 11345789999999998 999999998764
No 7
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=8.4e-28 Score=190.24 Aligned_cols=167 Identities=18% Similarity=0.299 Sum_probs=124.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCccc-ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhcc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLP 139 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 139 (268)
....++|+++|++|||||||+++|.++.+.. .+.++ .+..... +. +..+.+.+|||||++++...+..+++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t----~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITAT----VGYNVET--FE--KGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCC----SSEEEEE--EE--ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccc----cceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 3567899999999999999999999988754 22333 2211111 12 23378999999999999999999999
Q ss_pred CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc-----CCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 140 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV-----KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 140 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.+|++|+|+|+++. .++..+..|+..++...... ..+.|+++|+||+|+......+++.+.+... .+
T Consensus 86 ~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~--~~----- 157 (199)
T 4bas_A 86 NIDAVIFVVDSSDH-LRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLT--TL----- 157 (199)
T ss_dssp TCSEEEEEEETTCG-GGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHH--HH-----
T ss_pred cCCEEEEEEECCcH-HHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcch--hh-----
Confidence 99999999999997 78999999999987752110 1388999999999998876665555444311 00
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ....+++++|||++|+ +++++++|.+.+
T Consensus 158 ----------------------~-~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 158 ----------------------M-GDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp ----------------------H-TTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ----------------------c-cCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 0 0245789999999998 999999998764
No 8
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=5.2e-28 Score=185.51 Aligned_cols=160 Identities=22% Similarity=0.377 Sum_probs=119.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 144 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~i 144 (268)
.+|+++|++|||||||++++.++.+.. ..++..... ..+...+ +.+.+|||||+++++..+..+++.+|++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~------~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 71 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV------ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 71 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE------EEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE------EEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEE
Confidence 489999999999999999999887643 222222111 1122223 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 024385 145 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 224 (268)
Q Consensus 145 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (268)
++|+|++++ +++.....|+..+..... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 72 i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~----------------- 129 (164)
T 1r8s_A 72 IFVVDSNDR-ERVNEAREELMRMLAEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGL--H----------------- 129 (164)
T ss_dssp EEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG--G-----------------
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHhchh--hcCCeEEEEEECcCCcCCCCHHHHHHHhCc--c-----------------
Confidence 999999997 789999999988876532 268999999999999776544333222110 0
Q ss_pred ccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 225 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 225 ~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ....+++++|||++|. +++++++|.+.++
T Consensus 130 -----------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 130 -----------SL-RHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp -----------GC-SSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred -----------cc-cCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 00 0234689999999998 9999999998764
No 9
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=8.1e-28 Score=188.02 Aligned_cols=163 Identities=22% Similarity=0.372 Sum_probs=122.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+. ...++.+.... .+..++ +.+.+|||||++.++..+..+++.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-----~~~~t~g~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~ 84 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-----HITPTQGFNIK--SVQSQG--FKLNVWDIGGQRKIRPYWRSYFENT 84 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-----EEEEETTEEEE--EEEETT--EEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-----cccCcCCeEEE--EEEECC--EEEEEEECCCCHHHHHHHHHHhCCC
Confidence 46789999999999999999999987652 22233332111 122333 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 85 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~-------------- 145 (181)
T 1fzq_A 85 DILIYVIDSADR-KRFEETGQELTELLEEEK--LSCVPVLIFANKQDLLTAAPASEIAEGLNL--H-------------- 145 (181)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHTTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTG--G--------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECcCcccCCCHHHHHHHhCc--h--------------
Confidence 999999999997 789999999988876432 268999999999999876554433222110 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.. ....+++++|||++|+ ++++++||.+.+.
T Consensus 146 --------------~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 146 --------------TI-RDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp --------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred --------------hc-cCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 00 0235689999999999 9999999988764
No 10
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.95 E-value=1.3e-27 Score=186.71 Aligned_cols=162 Identities=22% Similarity=0.339 Sum_probs=121.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||+++|.++.+ ....++...... .+..++ +.+.+|||||++++...+..+++.+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~------~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE------EIVINN--TRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE------EEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE------EEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 5678999999999999999999999887 222222222211 122234 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 90 d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~-------------- 150 (181)
T 2h17_A 90 EFVIVVVDSTDR-ERISVTREELYKMLAHED--LRKAGLLIFANKQDVKECMTVAEISQFLKL--T-------------- 150 (181)
T ss_dssp CEEEEEEETTCT-TTHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG--G--------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhChh--hCCCeEEEEEECCCcccCCCHHHHHHHhCc--c--------------
Confidence 999999999997 789999999998886532 268999999999999876555443332210 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ....++++++|||++|+ +++++++|.+.+
T Consensus 151 --------------~-~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 151 --------------S-IKDHQWHIQACCALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp --------------G-CCSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred --------------c-ccCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence 0 00234689999999998 999999998753
No 11
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=6.5e-28 Score=190.39 Aligned_cols=164 Identities=21% Similarity=0.331 Sum_probs=119.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+..+|+++|++|||||||++++.++.+.. . .|+.+... ..+...+ +.+.+|||||+++++..+..+++.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~----~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ 96 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-T----IPTIGFNV--ETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQN 96 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-E----EEETTEEE--EEEEETT--EEEEEEECC-----CTTHHHHHHT
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-c----CCcCceeE--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcc
Confidence 4678999999999999999999999887642 2 22222111 1122233 789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++++|+|++++ .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+...
T Consensus 97 ~d~iilv~D~~~~-~s~~~~~~~l~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~--------------- 158 (192)
T 2b6h_A 97 TQGLIFVVDSNDR-ERVQESADELQKMLQEDE--LRDAVLLVFANKQDMPNAMPVSELTDKLGLQ--------------- 158 (192)
T ss_dssp CCEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTGG---------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHhcccc--cCCCeEEEEEECCCCCCCCCHHHHHHHhCcc---------------
Confidence 9999999999997 789999999998876532 2589999999999997765544332221100
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ....+++++|||++|+ +++++++|.+.+.
T Consensus 159 ---------------~~-~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 159 ---------------HL-RSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp ---------------GC-SSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred ---------------cc-cCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 00 0234689999999998 9999999998764
No 12
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=6.6e-28 Score=189.58 Aligned_cols=164 Identities=24% Similarity=0.309 Sum_probs=124.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.++|+++|++|||||||+++|.++.+.....++..... .. +... .+.+.+|||||++++...+..+++.+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGV 91 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE----EE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE----EE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccC
Confidence 4578999999999999999999999887543333332221 11 1222 37899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 92 d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-------~--------- 152 (188)
T 1zd9_A 92 SAIVYMVDAADQ-EKIEASKNELHNLLDKPQ--LQGIPVLVLGNKRDLPGALDEKELIEKMNL-------S--------- 152 (188)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTG-------G---------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhCcc--cCCCCEEEEEECCCCccCCCHHHHHHHhCh-------h---------
Confidence 999999999997 789999999998876532 268999999999999876544333222110 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ....+++++|||++|+ +++++++|.+.+.
T Consensus 153 --------------~~-~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 153 --------------AI-QDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp --------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred --------------hh-ccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00 0235689999999998 9999999998764
No 13
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=7.3e-28 Score=188.75 Aligned_cols=162 Identities=19% Similarity=0.309 Sum_probs=122.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++. .....++... .. ..+..++ +.+.+|||||++++...+..+++.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~----~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~ 86 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF----NI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFEST 86 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE----EE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc----ce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCC
Confidence 578999999999999999999999877 3323333221 11 1122233 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|++++ .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 87 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~-------------- 147 (186)
T 1ksh_A 87 DGLIWVVDSADR-QRMQDCQRELQSLLVEER--LAGATLLIFANKQDLPGALSCNAIQEALEL--D-------------- 147 (186)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG--G--------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHhChh--cCCCcEEEEEeCccCCCCCCHHHHHHHhCh--h--------------
Confidence 999999999997 789999999988887532 268999999999999876555443322110 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. ...++++++|||++|+ +++++++|.+.+
T Consensus 148 --------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 148 --------------SI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp --------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------hc-cCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 0235689999999998 999999998765
No 14
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=187.50 Aligned_cols=165 Identities=20% Similarity=0.364 Sum_probs=123.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC-cccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS-THQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.+..+|+++|++|||||||+++|.++. +..... ++.+.. ...+..++ +.+.+|||||++++...+..+++.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL----PTIGFS--IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE 90 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC----CCSSEE--EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC----Ccccee--EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence 567899999999999999999999876 332222 222211 12233344 689999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++|+|+|+++. .++.....|+..+.........+.|+++|+||+|+......+++.+.+.
T Consensus 91 ~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----------------- 152 (190)
T 2h57_A 91 GQAIIFVIDSSDR-LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC----------------- 152 (190)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT-----------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC-----------------
Confidence 9999999999997 7788888999988875431125789999999999987655554443321
Q ss_pred ccCcccCCCCCCCeeeccC-CceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+..+ ..++++++|||++|+ +++++++|.+.+.
T Consensus 153 ---------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 153 ---------------LENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp ---------------GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ---------------hhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0001 235689999999998 9999999988764
No 15
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=2.6e-28 Score=187.96 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=122.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
..+|+++|++|||||||++++.++.+.....+ +.+..........++..+.+.+|||||++++...+..+++.+|+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 78 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEP----TIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQA 78 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC----CSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC----ccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcE
Confidence 46899999999999999999998876443322 22222222334445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHH-HHHHHHHHHHHHhhhcccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIR-KQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
+++|+|++++ .++.....|+..+..... .+.|+++|+||+|+.......++. +...+..+
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~--------------- 139 (170)
T 1ek0_A 79 ALVVYDVTKP-QSFIKARHWVKELHEQAS---KDIIIALVGNKIDXLQEGGERKVAREEGEKLAE--------------- 139 (170)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH---------------
T ss_pred EEEEEecCCh-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECCCccccccccCCCHHHHHHHHH---------------
Confidence 9999999997 778888888888876532 689999999999997642111111 11111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|. +++++++|.+.++
T Consensus 140 -----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 140 -----------------EKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp -----------------HHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred -----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123589999999998 9999999998764
No 16
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.5e-27 Score=186.26 Aligned_cols=162 Identities=24% Similarity=0.380 Sum_probs=119.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+ . ...++.+... ..+..++ ..+.+|||||+++++..+..+++.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~----~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 86 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-V----TTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADT 86 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-E----EECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-C----ccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 5789999999999999999999998765 1 2223332111 1122233 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+......+++.+.+..
T Consensus 87 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~i~~~~~~----------------- 146 (183)
T 1moz_A 87 AAVIFVVDSTDK-DRMSTASKELHLMLQEEE--LQDAALLVFANKQDQPGALSASEVSKELNL----------------- 146 (183)
T ss_dssp EEEEEEEETTCT-TTHHHHHHHHHHHTTSST--TSSCEEEEEEECTTSTTCCCHHHHHHHTTT-----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHcChh--hCCCeEEEEEECCCCCCCCCHHHHHHHhCc-----------------
Confidence 999999999997 789999999998877532 268999999999999876554443322110
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ......+++++|||++|+ ++++++||.+.+
T Consensus 147 ------~--------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 147 ------V--------ELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp ------T--------TCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred ------c--------cccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 0 000234689999999998 999999998765
No 17
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.95 E-value=1.8e-27 Score=182.84 Aligned_cols=161 Identities=15% Similarity=0.195 Sum_probs=122.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..+|+++|++|||||||++++.++.+...+.++ .+ ..+......++..+.+.+|||||++++...+..+++.+|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t----~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 76 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT----IE-DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQ 76 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCC----SE-EEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC----cc-ceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCC
Confidence 3578999999999999999999998764433322 22 122233445666688999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+....
T Consensus 77 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------------- 137 (167)
T 1c1y_A 77 GFALVYSITAQ-STFNDLQDLREQILRVKD--TEDVPMILVGNKCDLEDERVVGKEQGQNLARQ---------------- 137 (167)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHHC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhhC--cCCCcEEEEEECccccccccCCHHHHHHHHHH----------------
Confidence 99999999997 778888888877766432 26899999999999975432 2222211110
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 138 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 -------------------WCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp -------------------TTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------ccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 124589999999998 999999998865
No 18
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.95 E-value=1.9e-27 Score=183.18 Aligned_cols=162 Identities=16% Similarity=0.196 Sum_probs=123.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|+|||||++++.++.+.....++ .+..........++..+.+.+|||||++++...+..+++.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 79 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQEST----IGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGA 79 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC----SSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----cceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCC
Confidence 35679999999999999999999988764433222 22222222234455567899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++.....|+..+..... .+.|+++|+||+|+..... .++..+...
T Consensus 80 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 139 (170)
T 1r2q_A 80 QAAIVVYDITNE-ESFARAKNWVKELQRQAS---PNIVIALSGNKADLANKRAVDFQEAQSYAD---------------- 139 (170)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCccccccCHHHHHHHHH----------------
Confidence 999999999997 778888888888876532 6899999999999975432 222221111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.++
T Consensus 140 --------------------~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 140 --------------------DNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp --------------------HTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred --------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123579999999998 9999999998875
No 19
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=2.8e-27 Score=185.95 Aligned_cols=162 Identities=21% Similarity=0.350 Sum_probs=122.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++..+|+++|++|||||||++++..+.+.. ..|+.+.... .+..++ +.+.+|||||+++++..+..+++.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~--~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~ 90 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-----TVPTVGVNLE--TLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDT 90 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-----ECSSTTCCEE--EEEETT--EEEEEEEECCSSSSCCCCSSSSTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-----cCCCCceEEE--EEEECC--EEEEEEECCCCHhHHHHHHHHhhcC
Confidence 578999999999999999999998877632 2233221111 122233 6899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|++++ +++.....|+..++.... ..+.|+++|+||+|+......+++.+.+...
T Consensus 91 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 151 (189)
T 2x77_A 91 DAVIYVVDSTDR-DRMGVAKHELYALLDEDE--LRKSLLLIFANKQDLPDAASEAEIAEQLGVS---------------- 151 (189)
T ss_dssp CEEEEEEETTCC-TTHHHHHHHHHHHHTCST--TTTCEEEEEEECTTSTTCCCHHHHHHHTTGG----------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHhhhh--cCCCeEEEEEECCCCcCCCCHHHHHHHhChh----------------
Confidence 999999999998 789999999988887532 2689999999999998765544333221100
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ...++++++|||++|+ +++++++|.+.+
T Consensus 152 --------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 152 --------------SI-MNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp --------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------hc-cCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 00 0234689999999998 999999998765
No 20
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=4.2e-27 Score=183.34 Aligned_cols=162 Identities=15% Similarity=0.212 Sum_probs=124.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|+|||||++++.++.+.....++.... .........+..+.+.+|||||++++...+..+++.+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 85 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA----FFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 85 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS----EEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE----EEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence 456899999999999999999999988754333333222 1122233455557899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++.....|+..+..... .+.|+++|+||+|+..... .++..+...
T Consensus 86 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---------------- 145 (181)
T 2efe_B 86 AAAIIVFDVTNQ-ASFERAKKWVQELQAQGN---PNMVMALAGNKSDLLDARKVTAEDAQTYAQ---------------- 145 (181)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECTTCTTTCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECCcccccccCCHHHHHHHHH----------------
Confidence 999999999997 778888899888877532 6899999999999975432 222222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.++
T Consensus 146 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 146 --------------------ENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp --------------------HTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred --------------------HcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 123579999999998 9999999998764
No 21
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.3e-27 Score=185.56 Aligned_cols=162 Identities=15% Similarity=0.180 Sum_probs=123.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|+|||||++++.++.+.....++ .+...........+..+.+.+|||||++++...+..+++.+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPT----IGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCC----SSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCC----cceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 45689999999999999999999998764333222 22222222334455567999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+...
T Consensus 97 d~iilV~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~---------------- 156 (192)
T 2fg5_A 97 AAAVIVYDITKQ-DSFYTLKKWVKELKEHG---PENIVMAIAGNKCDLSDIREVPLKDAKEYAE---------------- 156 (192)
T ss_dssp SEEEEEEETTCT-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCHHHHHHHHH----------------
Confidence 999999999997 78888888888877653 2589999999999997532 2222222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.++
T Consensus 157 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 157 --------------------SIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp --------------------TTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred --------------------HcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 123589999999998 9999999998765
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2e-27 Score=185.01 Aligned_cols=162 Identities=18% Similarity=0.264 Sum_probs=114.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||++++.++.+.. ....++.+..........++..+.+.+|||||++++...+..+++.+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA---GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC---CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC---CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 346799999999999999999999987732 12223333333333334566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+ +. +
T Consensus 85 d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~-~~---~------------ 144 (180)
T 2g6b_A 85 HALLLLYDVTNK-ASFDNIQAWLTEIHEYAQ---HDVALMLLGNKVDSAHERVVKREDGEK-LA---K------------ 144 (180)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECCSTTSCCCSCHHHHHH-HH---H------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccCcccccCHHHHHH-HH---H------------
Confidence 999999999997 678888888888776432 6889999999999986432 222221 11 1
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 145 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 145 --------------------EYGLPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp --------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=3.5e-27 Score=181.75 Aligned_cols=161 Identities=16% Similarity=0.214 Sum_probs=122.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..+|+++|++|+|||||++++.++.+.....+ +.+...........+..+.+.+|||||++++...+..+++.+|
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~ 80 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP----TIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSA 80 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCC----CCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC----ceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCC
Confidence 457999999999999999999999886443222 2222222223344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .++.....|+..+.... .+..|+++|+||+|+..... .++..+ +. +
T Consensus 81 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~---~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~~---~------------- 139 (170)
T 1z0j_A 81 AAIIVYDITKE-ETFSTLKNWVRELRQHG---PPSIVVAIAGNKCDLTDVREVMERDAKD-YA---D------------- 139 (170)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTSEEEEEEECTTCGGGCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECCccccccccCHHHHHH-HH---H-------------
Confidence 99999999997 67888888888777643 27899999999999976432 222111 11 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|. +++++++|.+.++
T Consensus 140 -------------------~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 140 -------------------SIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp -------------------HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred -------------------HcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 123589999999998 9999999998765
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=2.6e-27 Score=182.55 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=116.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||++++.++.+.....++.. ..........++..+.+.+|||||++++...+..+++.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 79 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG----ASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDS 79 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS----CEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccc----eEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccC
Confidence 3567999999999999999999998877543333332 222223344566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+...
T Consensus 80 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 139 (170)
T 1z08_A 80 NGAILVYDITDE-DSFQKVKNWVKELRKML---GNEICLCIVGNKIDLEKERHVSIQEAESYAE---------------- 139 (170)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECcccccccccCHHHHHHHHH----------------
Confidence 999999999997 77888888887766542 25789999999999976432 222222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 140 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 140 --------------------SVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp --------------------HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 113579999999998 999999998765
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=1.7e-27 Score=183.56 Aligned_cols=161 Identities=17% Similarity=0.253 Sum_probs=118.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...+|+++|++|+|||||++++.++.+.....++... ......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 77 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI----DFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAM 77 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------C----CEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccce----eEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCC
Confidence 3578999999999999999999998875433333322 222223444566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. .++..+..|+..+..... .+.|+++|+||+|+.......+..+.+.+
T Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~------------------ 135 (170)
T 1g16_A 78 GIILVYDITDE-RTFTNIKQWFKTVNEHAN---DEAQLLLVGNKSDMETRVVTADQGEALAK------------------ 135 (170)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCTTCCSCHHHHHHHHH------------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCCcCccCHHHHHHHHH------------------
Confidence 99999999997 678888888888776532 58999999999999543322221111111
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 136 -----------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 136 -----------------ELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp -----------------HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
No 26
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=2.3e-27 Score=187.23 Aligned_cols=164 Identities=24% Similarity=0.213 Sum_probs=118.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccccccee-------eccccceEEeeccc-ccCCceeeEEEEeCCCCCCchhh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS-------MEPNEDTFVLHSES-TKKGKIKPVHLVDVPGHSRLRPK 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~i~DtpG~~~~~~~ 133 (268)
...++|+++|++|||||||++.+.+. +...+.++ ..++.+........ ..++..+.+.+|||||++++...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 45689999999999999999766654 33222111 12233323333333 55667789999999999999999
Q ss_pred HhhhccCCCEEEEEEeCCCC-----CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 134 LDEFLPQAAGIVFVVDALEF-----LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
+..+++.+|++|+|+|++++ .+++..+..|+..+... ..+.|+++|+||+|+......+++.+.+.
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~----~~~~piilv~NK~Dl~~~~~~~~~~~~~~----- 161 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT----LDDVPIVIQVNKRDLPDALPVEMVRAVVD----- 161 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC----TTSSCEEEEEECTTSTTCCCHHHHHHHHC-----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc----cCCCCEEEEEEchhcccccCHHHHHHHHH-----
Confidence 99999999999999999942 14556666666665221 37899999999999987655554433322
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCcee-EEEEeeeccCC-chhHHHHHHhhc
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++ ++++|||++|+ +++++++|.+.+
T Consensus 162 -------------------------------~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 162 -------------------------------PEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp -------------------------------TTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred -------------------------------hcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 1233 79999999999 999999998764
No 27
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=2.2e-27 Score=186.07 Aligned_cols=161 Identities=14% Similarity=0.212 Sum_probs=120.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|||||||+++|.++.+.....+ +.. .........++..+.+.+|||||++++...+..+++.+|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 77 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDP----TIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 77 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCT----TCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----Cch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 567999999999999999999998876433222 222 222333445676678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.......+..+.+.+
T Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~------------------ 136 (189)
T 4dsu_A 78 GFLCVFAINNT-KSFEDIHHYREQIKRVKD--SEDVPMVLVGNKCDLPSRTVDTKQAQDLAR------------------ 136 (189)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTSSSCSSCHHHHHHHHH------------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccCcccccCHHHHHHHHH------------------
Confidence 99999999997 778888888888876432 268999999999999754433332222222
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 137 -----------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 137 -----------------SYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp -----------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
No 28
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.95 E-value=4.4e-27 Score=186.92 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=119.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+...+.++.. .......+..++..+.+.+|||||++++...+..+++.+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIG----VDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC--------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcc----eEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 3457999999999999999999999887543333322 122222334456667999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+...
T Consensus 103 d~iilv~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---------------- 162 (201)
T 2hup_A 103 NGAILAYDITKR-SSFLSVPHWIEDVRKYA---GSNIVQLLIGNKSDLSELREVSLAEAQSLAE---------------- 162 (201)
T ss_dssp SEEEEEEETTBH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCccccccccCHHHHHHHHH----------------
Confidence 999999999997 67888888888887653 2689999999999997633 2333222211
Q ss_pred cccCcccCCCCCCCeeeccCCcee-EEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++ ++++|||++|+ +++++++|.+.+
T Consensus 163 --------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 163 --------------------HYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp --------------------HTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1123 79999999998 999999998764
No 29
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=7.1e-27 Score=179.53 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=102.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||++++.+..+... .+..+. .+......++..+.+.+|||||++.+...+..+++.+|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 75 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-----AEAAGH-TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDA 75 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---------------C-EEEEEEEETTEEEEEEEEECC---------------CCE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-----CCcccc-ceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCE
Confidence 57999999999999999999987654211 111111 112334556777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. +++..+..|+..+..... ..+.|+++|+||+|+...... ++.. .+..
T Consensus 76 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~~----------------- 134 (166)
T 3q72_A 76 YVIVYSVTDK-GSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGR-ACAV----------------- 134 (166)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHH-HHHH-----------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccccccccccCHHHHH-HHHH-----------------
Confidence 9999999997 789999999988887532 268999999999999764432 2211 1111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 135 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 135 ------------------VFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp ------------------HTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ------------------HhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998764
No 30
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=9.1e-27 Score=187.17 Aligned_cols=195 Identities=31% Similarity=0.457 Sum_probs=140.6
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+.++|+++|++|+|||||+++|.++.+.. ...+..++.+.. . ....+.+|||||+++++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~-~~~~~~~~~~~~-------~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAAD-------Y--DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCC-BCCCSSCEEETT-------G--GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-eeeecCceEEEE-------e--eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 3567899999999999999999999987643 122222222111 1 22588999999999999998888877
Q ss_pred ----CCEEEEEEeCC-CCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh-
Q 024385 141 ----AAGIVFVVDAL-EFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR- 213 (268)
Q Consensus 141 ----~d~ii~v~d~~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~- 213 (268)
+|++|+|+|++ +. .++.....|+..++..... ...++|+++|+||+|+......+++.+.+.++++.+....
T Consensus 79 ~~~~~~~~i~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 157 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDP-KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK 157 (218)
T ss_dssp HGGGEEEEEEEEETTSCT-TCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCCh-HHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999 65 7789999999888764211 1268999999999999988888877777777676654432
Q ss_pred ------hcccccc--ccCcccCCCCCCCeeeccCCceeEEEEeeeccCCchhHHHHHHhhc
Q 024385 214 ------SAVSEAD--VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 266 (268)
Q Consensus 214 ------~~~~~~~--~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~ 266 (268)
++....+ .......-.....|.|+.+..++.++.+|+.+++++++++|+.+++
T Consensus 158 ~~~~~~Sa~~~~~~~~~~~~~~l~~~~~f~~~~~~~~v~~~~~s~~~~~i~~~~~~~~~~~ 218 (218)
T 1nrj_B 158 KSLNEVERKINEEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 218 (218)
T ss_dssp HHHHC--------------CTTC----CCCGGGSSSCEEEEECBTTTTBCHHHHHHHHHHC
T ss_pred ccccccccccccccchhhhcccccCCCCccccccCCceEEEeccccCCcHHHHHHHHHhhC
Confidence 2222221 1122222222367889899999999999999999999999998863
No 31
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=3.3e-27 Score=183.44 Aligned_cols=161 Identities=18% Similarity=0.216 Sum_probs=123.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..+|+++|++|||||||++++.++.+..... ++.+..........++..+.+.+|||||++++...+..+++.+|
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC----CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 45899999999999999999999887644332 23332333334445666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+.. .
T Consensus 89 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 147 (179)
T 2y8e_A 89 VAVVVYDITNT-NSFHQTSKWIDDVRTERG---SDVIIMLVGNKTDLSDKRQVSTEEGERKA----K------------- 147 (179)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHHT---TSSEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECCcccccCcCCHHHHHHHH----H-------------
Confidence 99999999997 678888888888776432 6899999999999975432 22222111 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.++
T Consensus 148 -------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 148 -------------------ELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp -------------------HHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123589999999998 9999999998765
No 32
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.5e-27 Score=186.95 Aligned_cols=160 Identities=17% Similarity=0.223 Sum_probs=122.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....+ +.+.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA----TIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCC----CCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCC----ccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 457999999999999999999999887543332 2332233333445666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+ +. +
T Consensus 101 ~~i~v~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~---~------------- 159 (201)
T 2ew1_A 101 ALILTYDITCE-ESFRCLPEWLREIEQYA---SNKVITVLVGNKIDLAERREVSQQRAEE-FS---E------------- 159 (201)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCSSCHHHHHH-HH---H-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHHH-HH---H-------------
Confidence 99999999997 77888888888876643 26899999999999975332 222211 11 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 160 -------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 160 -------------------AQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp -------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999988754
No 33
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.95 E-value=1.7e-27 Score=186.08 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||++++.++.+.....++ .+.......+.+++..+.+.+|||||++++...+..+++.+|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFIST----IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHH----HCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc----ccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 3579999999999999999999988764333322 232222233445666689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|++++ .++..+..|+..+..... .+.|+++|+||+|+..... .++..+.. +
T Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------- 141 (183)
T 2fu5_C 83 GIMLVYDITNE-KSFDNIRNWIRNIEEHAS---ADVEKMILGNKCDVNDKRQVSKERGEKLA----L------------- 141 (183)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEEC--CCSCCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECccCCccCcCCHHHHHHHH----H-------------
Confidence 99999999997 778888888888876532 6899999999999976432 22222211 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 142 -------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 142 -------------------DYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp -------------------HHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998764
No 34
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.95 E-value=4.3e-27 Score=180.67 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=119.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|+|||||++++.++.+..... ++.+ ..+......++..+.+.+|||||++++...+..+++.+|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----~t~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 77 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE----PTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 77 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC----TTCC-EEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCC----CCcc-eEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCC
Confidence 45799999999999999999999887643222 2222 122223445666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 137 (168)
T 1u8z_A 78 GFLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAD----------------- 137 (168)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHC--CTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccccccCccCHHHHHHHHH-----------------
Confidence 99999999997 778888888888876532 15899999999999976432 222222211
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++||.+.+
T Consensus 138 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 138 -------------------QWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp -------------------HHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998764
No 35
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.95 E-value=7.8e-27 Score=182.97 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=119.0
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
+.+.++|+++|++|||||||+++++++.+..... ++.+.+ ...+.+++..+.+.+|||||+++++ +++.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~----~t~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~ 85 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEES----PEGGRF--KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW 85 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCC----TTCEEE--EEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC----CCcceE--EEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence 3567899999999999999999999988754332 222222 2445667777889999999998876 7888
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC----CCHHHHHHHHHHHHHHHHHhhhcc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA----HTKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+|++++|||+++. .++..+..|+..+...... .+.|+++|+||+|+... ...++..+...+
T Consensus 86 ~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~------------ 150 (184)
T 3ihw_A 86 VDAVVFVFSLEDE-ISFQTVYNYFLRLCSFRNA--SEVPMVLVGTQDAISAANPRVIDDSRARKLSTD------------ 150 (184)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHTTSCG--GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH------------
T ss_pred CCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccccccccCHHHHHHHHHH------------
Confidence 9999999999997 7899989999888775321 57899999999999521 222222222111
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+.++|++|||++|+ +++++++|.+.+
T Consensus 151 -----------------------~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 151 -----------------------LKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp -----------------------TTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -----------------------cCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 223589999999998 999999998754
No 36
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.94 E-value=5.3e-27 Score=185.16 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=122.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....+ +.+.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYIS----TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCC----CSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC----cccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 357999999999999999999999877543332 2332333333455666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+........ ..+.+..
T Consensus 91 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 149 (196)
T 3tkl_A 91 GIIVVYDVTDQ-ESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLTTKKVVDYTTAKEFAD----------------- 149 (196)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccccccccCHHHHHHHHH-----------------
Confidence 99999999997 778888888888766532 6899999999999976543211 1111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 150 ------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 150 ------------------SLGIPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp ------------------HTTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ------------------HcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999988754
No 37
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=1.6e-27 Score=188.13 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=118.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+.....++. + ..+......++..+.+.+|||||++++...+..+++.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~----~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 95 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV----F-ENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 95 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----E-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCee----e-eeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence 456899999999999999999999988744333332 2 22223345567678899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++|+|+|+++. .++..+ ..|+..+... ..+.|+++|+||+|+..........+...+..+.
T Consensus 96 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------ 158 (194)
T 3reg_A 96 DVVLLCFAVNNR-TSFDNISTKWEPEIKHY----IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK------------ 158 (194)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHH----CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH------------
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh------------
Confidence 999999999997 778886 4555555433 2689999999999997532111111111111111
Q ss_pred ccCcccCCCCCCCeeeccCCceeE-EEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVS-VAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~-~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.++. ++++||++|+ +++++++|.+.+
T Consensus 159 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 159 --------------------LGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp --------------------HTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------cCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 1123 9999999999 999999998764
No 38
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.94 E-value=5.5e-27 Score=182.84 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=121.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+..... ++.+.. +......++..+.+.+|||||++++...+..+++.+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 78 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYD----PTIENT-FTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 78 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCC----TTCCEE-EEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC----CCcccc-EEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcC
Confidence 356899999999999999999999887643322 222222 234455567678899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 79 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 139 (181)
T 3t5g_A 79 NGYILVYSVTSI-KSFEVIKVIHGKLLDMVG--KVQIPIMLVGNKKDLHMERVISYEEGKALAE---------------- 139 (181)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcceecHHHHHHHHH----------------
Confidence 999999999997 788999999888876532 25899999999999965432 222222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 140 --------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 140 --------------------SWNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp --------------------HTTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred --------------------HhCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998764
No 39
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.9e-27 Score=183.32 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=121.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+.... .++.+.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 82 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSY----ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGT 82 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CC----TTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccC
Confidence 35689999999999999999999998764322 23333333333445566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+...... ++..+. . .
T Consensus 83 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-~---~------------ 141 (181)
T 3tw8_B 83 HGVIVVYDVTSA-ESFVNVKRWLHEINQNC----DDVCRILVGNKNDDPERKVVETEDAYKF-A---G------------ 141 (181)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHC----TTSEEEEEEECTTCGGGCCSCHHHHHHH-H---H------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECCCCchhcccCHHHHHHH-H---H------------
Confidence 999999999997 78888888888887643 68999999999998764422 221111 1 1
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 142 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 142 --------------------QMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp --------------------HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998764
No 40
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.94 E-value=6.9e-27 Score=183.01 Aligned_cols=160 Identities=20% Similarity=0.253 Sum_probs=121.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|||||||++++.++.+.....++ .+.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 84 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHT----IGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 84 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC----SEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----cceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence 4579999999999999999999998875433322 222222233444666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+.. +
T Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 143 (186)
T 2bme_A 85 GALLVYDITSR-ETYNALTNWLTDARMLAS---QNIVIILCGNKKDLDADREVTFLEASRFA----Q------------- 143 (186)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccCHHHHHHHH----H-------------
Confidence 99999999997 778888888877765432 6899999999999975332 22222111 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 144 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 144 -------------------ENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp -------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999988754
No 41
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.94 E-value=6.3e-27 Score=185.60 Aligned_cols=165 Identities=19% Similarity=0.284 Sum_probs=115.0
Q ss_pred HhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 59 ~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
....+.++|+++|++|||||||++++.++.+.....++... .........++..+.+.+|||||++++...+..++
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 98 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV----DFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYF 98 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC--------------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHH
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccc----eeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHH
Confidence 33467899999999999999999999998874433332221 11122234456667899999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC------C--CHHHHHHHHHHHHHHHH
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA------H--TKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~------~--~~~~~~~~l~~~l~~~~ 210 (268)
+.+|++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+... . ..++.. .+. .
T Consensus 99 ~~~d~iilv~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~~~---~--- 167 (199)
T 2p5s_A 99 RKADGVLLLYDVTCE-KSFLNIREWVDMIEDAAH---ETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-KLA---M--- 167 (199)
T ss_dssp HHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHC------CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-HHH---H---
T ss_pred hhCCEEEEEEECCCh-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccccccccccccccCHHHHH-HHH---H---
Confidence 999999999999997 678888888877665422 58899999999998521 1 111111 111 1
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.+.
T Consensus 168 -----------------------------~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 -----------------------------TYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp -----------------------------HHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred -----------------------------HcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 123589999999998 9999999988653
No 42
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.94 E-value=5.1e-27 Score=182.65 Aligned_cols=161 Identities=16% Similarity=0.228 Sum_probs=122.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+..... ++.+. .+......++..+.+.+|||||++++...+..+++.+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~t~~~-~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD----PTIED-SYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC----TTCCE-EEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccC----CCcCc-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 456899999999999999999999987643322 22222 2223345566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..++.... ..+.|+++|+||+|+...... ++.. .+..
T Consensus 82 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~~--------------- 142 (181)
T 2fn4_A 82 HGFLLVFAINDR-QSFNEVGKLFTQILRVKD--RDDFPVVLVGNKADLESQRQVPRSEAS-AFGA--------------- 142 (181)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHHT--SSCCCEEEEEECGGGGGGCCSCHHHHH-HHHH---------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHH-HHHH---------------
Confidence 999999999997 778888888888865432 268999999999999764322 2211 1111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 143 --------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 143 --------------------SHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp --------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998754
No 43
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.94 E-value=1.4e-26 Score=179.70 Aligned_cols=165 Identities=14% Similarity=0.163 Sum_probs=122.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+..... ++.+.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF----HTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS 80 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC--------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence 456799999999999999999999887643332 3333333333444566667999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCC-ccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ....+.|+++|+||+|+.... ..++..+....
T Consensus 81 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~--------------- 144 (177)
T 1wms_A 81 DCCLLTFSVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD--------------- 144 (177)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH---------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh---------------
Confidence 999999999997 678888888877765321 112678999999999997432 23332222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++||++|+ +++++++|.+.+
T Consensus 145 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 145 --------------------NGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp --------------------TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224579999999998 999999998764
No 44
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.94 E-value=6.6e-27 Score=182.72 Aligned_cols=161 Identities=12% Similarity=0.190 Sum_probs=122.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+.....+ +.+... ......++..+.+.+|||||++++...+..+++.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~----t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDP----TIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCT----TCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----Ccccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 4568999999999999999999998876433322 222222 33345567667889999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.... ..++..+...
T Consensus 91 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~---------------- 151 (183)
T 3kkq_A 91 DGFLIVYSVTDK-ASFEHVDRFHQLILRVKD--RESFPMILVANKVDLMHLRKVTRDQGKEMAT---------------- 151 (183)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHT--SSCCCEEEEEECTTCSTTCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECCCchhccCcCHHHHHHHHH----------------
Confidence 999999999997 788888888888866422 2688999999999997633 2222222111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeec-cCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGL-TGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~-~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||+ +|+ +++++++|.+.+
T Consensus 152 --------------------~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 152 --------------------KYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp --------------------HHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 112579999999 897 999999998764
No 45
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.94 E-value=9.5e-27 Score=183.35 Aligned_cols=160 Identities=17% Similarity=0.192 Sum_probs=119.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||++++.++.+.....++.... .....+..++..+.+.+|||||++++...+..+++.+|
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE----FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS----EEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce----eEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 45799999999999999999999988754333322211 11222344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+.. +
T Consensus 96 ~ii~v~d~~~~-~s~~~~~~~l~~i~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------- 154 (191)
T 2a5j_A 96 GALLVYDITRR-ETFNHLTSWLEDARQHSS---SNMVIMLIGNKSDLESRRDVKREEGEAFA----R------------- 154 (191)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccCCccccCHHHHHHHH----H-------------
Confidence 99999999997 778888888888876532 6899999999999975332 22222111 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 155 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 155 -------------------EHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp -------------------HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998754
No 46
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.94 E-value=5e-27 Score=180.13 Aligned_cols=160 Identities=18% Similarity=0.261 Sum_probs=121.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..+|+++|++|||||||++++.++.+..... ++.+.. .......++..+.+.+|||||++++...+..+++.+|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~ 76 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYD----PTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQ 76 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCC----CCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 35799999999999999999999887643222 222222 2333455666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+ +. +
T Consensus 77 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~---~------------- 136 (167)
T 1kao_A 77 GFILVYSLVNQ-QSFQDIKPMRDQIIRVKR--YEKVPVILVGNKVDLESEREVSSSEGRA-LA---E------------- 136 (167)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHTT--TSCCCEEEEEECGGGGGGCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECCcccccccCCHHHHHH-HH---H-------------
Confidence 99999999997 678888888888876532 25899999999999975432 222211 11 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 137 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 137 -------------------EWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp -------------------HHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred -------------------HhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
No 47
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=9.4e-27 Score=183.52 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=121.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|||||||+++|.++.+.....++ .+.......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAAT----IGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC----CSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCc----cceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 4579999999999999999999998875433322 222222223344566689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.... ..++..+...
T Consensus 90 ~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------------------ 148 (195)
T 1x3s_A 90 GVILVYDVTRR-DTFVKLDNWLNELETYCT--RNDIVNMLVGNKIDKENREVDRNEGLKFAR------------------ 148 (195)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHTTCCS--CSCCEEEEEEECTTSSSCCSCHHHHHHHHH------------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC--cCCCcEEEEEECCcCcccccCHHHHHHHHH------------------
Confidence 99999999997 678888888888776432 2579999999999995432 2222221111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 149 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 149 ------------------KHSMLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp ------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998764
No 48
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=179.04 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=110.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC--chhhHhhhccC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR--LRPKLDEFLPQ 140 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~--~~~~~~~~~~~ 140 (268)
+.++|+++|++|||||||+++|.++.+..... + .+.......+..++..+.+.+|||||++. +......+++.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 77 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-Q----LGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQG 77 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-C----SSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTS
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-c----cccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhccc
Confidence 56799999999999999999999887643211 1 11112223344566667899999999987 56667788999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+ +. .
T Consensus 78 ~~~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~---~----------- 139 (175)
T 2nzj_A 78 GSAYVIVYSIADR-GSFESASELRIQLRRTHQ--ADHVPIILVGNKADLARCREVSVEEGRA-CA---V----------- 139 (175)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHH-HH---H-----------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHhhc--cCCCCEEEEEEChhhccccccCHHHHHH-HH---H-----------
Confidence 9999999999997 788888888887776422 25899999999999976432 222111 11 1
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 140 ---------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 140 ---------------------VFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp ---------------------HHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------HcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
No 49
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.94 E-value=2e-26 Score=183.04 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=121.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....++. +.......+...+..+.+.+|||||++++...+..+++.+|
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC----SEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc----ceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 35799999999999999999999988754333332 22222223344566689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+. . +
T Consensus 83 ~ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~---~------------- 141 (203)
T 1zbd_A 83 GFILMYDITNE-ESFNAVQDWSTQIKTYS---WDNAQVLLVGNKCDMEDERVVSSERGRQL-A---D------------- 141 (203)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHS---CSSCEEEEEEECTTCTTSCCSCHHHHHHH-H---H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccCcccccCHHHHHHH-H---H-------------
Confidence 99999999997 77888888888876643 26889999999999976432 2222211 1 1
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|. +++++++|.+.+
T Consensus 142 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 142 -------------------HLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp -------------------HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -------------------HCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999987653
No 50
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.94 E-value=1.6e-26 Score=179.56 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=121.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+.....++.... ........++..+.+.+|||||++++...+..+++.+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE----FGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCC----EEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE----EEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 346899999999999999999999988644333222211 1122233455567899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+...
T Consensus 89 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 148 (179)
T 1z0f_A 89 AGALMVYDITRR-STYNHLSSWLTDARNLTN---PNTVIILIGNKADLEAQRDVTYEEAKQFAE---------------- 148 (179)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEeCcCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccCHHHHHHHHH----------------
Confidence 999999999997 778888888887766532 6899999999999975432 222222211
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 149 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 --------------------ENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp --------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998765
No 51
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.94 E-value=8.7e-27 Score=179.17 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=121.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+.....++... ......+..++..+.+.+|||||++++...+..+++.+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 78 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV----DFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGA 78 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSS----SEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEE----EEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCC
Confidence 35689999999999999999999998775433333221 22222334456567899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+.... .+.|+++|+||+|+.... ..++..+.. +
T Consensus 79 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------ 137 (168)
T 1z2a_A 79 QACVLVFSTTDR-ESFEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGLA----K------------ 137 (168)
T ss_dssp CEEEEEEETTCH-HHHHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHHH----H------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccCcccccCHHHHHHHH----H------------
Confidence 999999999997 67888888888877643 588999999999997543 222222211 1
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 138 --------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 138 --------------------RLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp --------------------HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998764
No 52
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.94 E-value=3.9e-27 Score=183.03 Aligned_cols=164 Identities=20% Similarity=0.177 Sum_probs=118.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCC-ceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKG-KIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.+..+|+++|++|||||||++++.++.+.....++ .+.......+...+ ..+.+.+|||||++++...+..+++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 79 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQT----IGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYG 79 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHT----TTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCc----eeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhh
Confidence 45689999999999999999999998764333322 22222222233333 45789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
+|++++|+|+++. .++..+..|+..+...... ..+.| +++|+||+|+..... .++..+.. +
T Consensus 80 ~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~----~---------- 143 (178)
T 2hxs_A 80 AQGVLLVYDITNY-QSFENLEDWYTVVKKVSEE-SETQPLVALVGNKIDLEHMRTIKPEKHLRFC----Q---------- 143 (178)
T ss_dssp CSEEEEEEETTCH-HHHHTHHHHHHHHHHHHHH-HTCCCEEEEEEECGGGGGGCSSCHHHHHHHH----H----------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcc-cCCCCeEEEEEEccccccccccCHHHHHHHH----H----------
Confidence 9999999999997 6788888887777653210 02455 899999999975332 22222111 1
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.+.
T Consensus 144 ----------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 144 ----------------------ENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp ----------------------HHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred ----------------------HcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 113579999999998 9999999988753
No 53
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.94 E-value=1.2e-26 Score=180.36 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=113.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+.. +. ++.+.. +...+..++..+.+.+|||||+++ ..|++.+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~----~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~ 73 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LE----KTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWA 73 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CS----SCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cC----CCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhC
Confidence 356899999999999999999999988753 22 222222 233345567678899999999987 4678889
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC--C--CCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT--A--HTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~--~--~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
|++|+|+|++++ .++..+..|+..+.........+.|+++|+||+|+.. . ...++..+... .
T Consensus 74 d~~ilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~--------- 139 (178)
T 2iwr_A 74 DAVIFVFSLEDE-NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----D--------- 139 (178)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----H---------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----h---------
Confidence 999999999997 7888888865444332111126899999999999942 1 12222222111 1
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 140 ----------------------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 140 ----------------------MKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp ----------------------HSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ----------------------hcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 224689999999998 999999998754
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=182.58 Aligned_cols=160 Identities=20% Similarity=0.244 Sum_probs=120.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....++ .+...........+..+.+.+|||||++++...+..+++.+|
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTT----IGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCC----SSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc----cceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 3579999999999999999999998875433222 222222222334555678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+...
T Consensus 100 ~vi~v~D~~~~-~s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 158 (193)
T 2oil_A 100 GALLVFDLTKH-QTYAVVERWLKELYDHA---EATIVVMLVGNKSDLSQAREVPTEEARMFAE----------------- 158 (193)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHTTS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECCCcccccccCHHHHHHHHH-----------------
Confidence 99999999997 67888888888887643 26899999999999976432 222221111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 159 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 159 -------------------NNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp -------------------HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999988754
No 55
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.94 E-value=1.9e-26 Score=181.32 Aligned_cols=159 Identities=21% Similarity=0.229 Sum_probs=120.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||+++|.++.+.....++. +.......+...+..+.+.+|||||++++...+..+++.+|+
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC----CCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce----eEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 5799999999999999999999988754333332 212222223345556799999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+. . +
T Consensus 98 ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~---~-------------- 155 (189)
T 2gf9_A 98 FLLMYDIANQ-ESFAAVQDWATQIKTYS---WDNAQVILVGNKCDLEDERVVPAEDGRRL-A---D-------------- 155 (189)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHH-H---H--------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccCCCHHHHHHH-H---H--------------
Confidence 9999999997 67888888888876643 26899999999999976432 2222211 1 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 156 ------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 156 ------------------DLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
No 56
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=183.94 Aligned_cols=161 Identities=18% Similarity=0.283 Sum_probs=123.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+...+. ++.+. .+...+..++..+.+.+|||||++++...+..+++.+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE----PTKAD-SYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC----TTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCC----Cccce-EEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 456899999999999999999999887643322 22222 2223344566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 87 ~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 147 (206)
T 2bov_A 87 EGFLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAE---------------- 147 (206)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccCccccccccHHHHHHHHH----------------
Confidence 999999999997 778888888888877532 25899999999999976432 232222221
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ ++++++||.+.+
T Consensus 148 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 148 --------------------QWNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp --------------------HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998754
No 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=1.2e-26 Score=181.45 Aligned_cols=161 Identities=18% Similarity=0.273 Sum_probs=122.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+...+. ++.+ ..+......++..+.+.+|||||++++...+..+++.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE----PTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----TTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCC----Cccc-eEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence 456899999999999999999999887643222 2222 22223344566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 91 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 151 (187)
T 2a9k_A 91 EGFLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAE---------------- 151 (187)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHHC--CTTCCEEEEEECGGGGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccCccCHHHHHHHHH----------------
Confidence 999999999997 778888888888876532 15899999999999976432 222222211
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 152 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 152 --------------------QWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp --------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998764
No 58
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.94 E-value=2.3e-26 Score=183.19 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=122.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....++... ......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV----DFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH 82 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCC----CEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc----eeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCC
Confidence 4579999999999999999999998875443333222 222223344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... .++..+...
T Consensus 83 ~vilv~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 141 (206)
T 2bcg_Y 83 GIIIVYDVTDQ-ESFNGVKMWLQEIDRYAT---STVLKLLVGNKCDLKDKRVVEYDVAKEFAD----------------- 141 (206)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHSC---TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCccccccCHHHHHHHHH-----------------
Confidence 99999999997 778888888888766532 6799999999999976432 222221111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 142 -------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 142 -------------------ANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp -------------------HTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122479999999998 999999998764
No 59
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.3e-26 Score=181.49 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=118.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
...+|+++|++|||||||++++.++.+.....++... . +...+..++..+.+.+|||||++++...+..+++.+|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~----~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 91 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD----H-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC----C-EEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc----e-eEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence 4579999999999999999999998775433333221 1 1223445666688999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHH-----H-HHHHHHHHHhhhc
Q 024385 143 GIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ-----M-EKEIDKLRASRSA 215 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-----l-~~~l~~~~~~~~~ 215 (268)
++|+|+|+++. .++..+. .|+..+.... .+.|+++|+||+|+.......+..+. + ..+...
T Consensus 92 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~------- 159 (194)
T 2atx_A 92 VFLICFSVVNP-ASFQNVKEEWVPELKEYA----PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK------- 159 (194)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH-------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH-------
Confidence 99999999997 7788876 6766666532 58999999999999754211000000 0 000000
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+....+..++++|||++|+ +++++++|.+.+
T Consensus 160 --------------------~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 160 --------------------LAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp --------------------HHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0000111379999999998 999999998763
No 60
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.94 E-value=1.4e-26 Score=184.47 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=119.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+..+|+++|++|||||||++++..+.+.....++. + ..+......++..+.+.+|||||++++...+..+++.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~----~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV----F-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ 101 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCS----E-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCee----c-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc
Confidence 3578899999999999999999999887744333322 1 2233344556767888999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+|++++|+|+++. .++.... .|+..+.... .+.|+++|+||+|+.......+..+... ...+...
T Consensus 102 ~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~---------~~~v~~~ 167 (204)
T 4gzl_A 102 TDVFLICFSLVSP-ASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKK---------LTPITYP 167 (204)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----SSCCEEEEEECHHHHTCHHHHHHHHHTT---------CCCCCHH
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhccchhhhhhhhccc---------cccccHH
Confidence 9999999999997 7788876 5655555432 5899999999999975432211110000 0000000
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ..+....+..++++|||++|+ +++++++|.+.+
T Consensus 168 ~~------------~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 168 QG------------LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HH------------HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HH------------HHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 00 001111233479999999999 999999998764
No 61
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=6e-27 Score=186.05 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=119.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||+++|.++.+...+.+ +.+. .+......++..+.+.+|||||++++...+..+++.+
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDP----TVEN-TYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCC----CSEE-EEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCC----ccce-EEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 5678999999999999999999999887543322 2222 2233344455568899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++++|+|+++. .++..+..|+..+..... ..++|+++|+||+|+...... .+.. .+.+
T Consensus 97 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~~--------------- 157 (201)
T 3oes_A 97 HGYVLVYSVTSL-HSFQVIESLYQKLHEGHG--KTRVPVVLVGNKADLSPEREVQAVEGK-KLAE--------------- 157 (201)
T ss_dssp CEEEEEEETTCH-HHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHH-HHHH---------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCccccccCHHHHH-HHHH---------------
Confidence 999999999997 788999999888876532 258899999999999754432 2221 1111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 158 --------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 158 --------------------SWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp --------------------HHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123489999999998 999999998764
No 62
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.94 E-value=1.6e-26 Score=185.55 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=118.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+...+.++. +. .+......++..+.+.+|||||++++...+..+++.+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~----~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV----FE-NYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----EE-EEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCee----ee-eEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 467899999999999999999999988754333332 22 2233345566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHH-HHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--------------CHHHHHHHHHHHH
Q 024385 142 AGIVFVVDALEFLPNCSA-ASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--------------TKEFIRKQMEKEI 206 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~~~~~~l~~~l 206 (268)
|++|+|||+++. .++.. ...|+..+.... .+.|+++|+||+|+.... ..++..+..
T Consensus 100 d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 170 (214)
T 3q3j_B 100 DAVLLCFDISRP-ETVDSALKKWRTEILDYC----PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA---- 170 (214)
T ss_dssp SEEEEEEETTCT-HHHHHHHTHHHHHHHHHC----TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH----
T ss_pred eEEEEEEECcCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH----
Confidence 999999999997 77888 577777776642 689999999999997531 111111111
Q ss_pred HHHHHhhhccccccccCcccCCCCCCCeeeccCCcee-EEEEeeeccCC--chhHHHHHHhhc
Q 024385 207 DKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE--ISQVEQFIREQV 266 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~-~~~~~Sa~~g~--i~~l~~~l~~~~ 266 (268)
+ ..++ +|++|||++|. +++++++|.+.+
T Consensus 171 ~--------------------------------~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 171 K--------------------------------QLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp H--------------------------------HHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred H--------------------------------HcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 0 1234 79999999995 999999998754
No 63
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=183.15 Aligned_cols=162 Identities=16% Similarity=0.215 Sum_probs=117.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||+++|.++.+.... .++.+.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC----KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCC----CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 34578999999999999999999988764322 22333222233344566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++.. .+.+
T Consensus 100 d~iilV~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilV~NK~Dl~~~~~v~~~~~~-~~~~--------------- 159 (192)
T 2il1_A 100 KGIILVYDITKK-ETFDDLPKWMKMIDKYA---SEDAELLLVGNKLDCETDREITRQQGE-KFAQ--------------- 159 (192)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHH-HHHH---------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHH-HHHH---------------
Confidence 999999999997 67888888877665543 25899999999999975432 22211 1110
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++|||++|+ +++++++|.+.+
T Consensus 160 -------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 160 -------------------QITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp -------------------TSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------hcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0124589999999998 999999998764
No 64
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.94 E-value=7e-27 Score=182.25 Aligned_cols=164 Identities=14% Similarity=0.094 Sum_probs=109.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|+|||||++++.++.+.....++.. ..+......++..+.+.+|||||++++...+..+++.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-----DNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGA 80 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC---------------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeee-----eeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCC
Confidence 5679999999999999999999998876543333322 12223344556567888999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH--------HHHHHHHHHHHHHHh
Q 024385 142 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF--------IRKQMEKEIDKLRAS 212 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--------~~~~l~~~l~~~~~~ 212 (268)
|++++|+|+++. .++..+. .|+..+.... .+.|+++|+||+|+........ ..+...+..+.
T Consensus 81 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~---- 151 (182)
T 3bwd_D 81 DVFILAFSLISK-ASYENVSKKWIPELKHYA----PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL---- 151 (182)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH----
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH----
Confidence 999999999997 7788876 5666555432 5899999999999965421100 00011110010
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+..++++|||++|+ +++++++|.+.+
T Consensus 152 ---------------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 152 ---------------------------IGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp ---------------------------HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------------------------cCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 112379999999998 999999998764
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.94 E-value=1.4e-26 Score=181.29 Aligned_cols=120 Identities=16% Similarity=0.128 Sum_probs=94.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||++++.++.+...+.++. +.. +...+..++..+.+.+|||||++++...+..+++.+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~----~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 79 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----FEN-YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----EEE-EEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----cee-EEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCC
Confidence 467899999999999999999999988754333332 211 122344566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|++|+|+|+++. .++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 80 ~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 80 DAVLICFDISRP-ETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 125 (184)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCEEEEEEECGGGGG
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHHHC----CCCCEEEEEEcchhhc
Confidence 999999999997 778877 56666655432 5899999999999974
No 66
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=2.6e-26 Score=182.05 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=117.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCce-------------------------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKI------------------------- 116 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 116 (268)
....+|+++|++|||||||+++|+++.+.....++... ......+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGA----SFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIIT 80 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSC----EEEEEEEETTC---------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccc----eeEEEEEEecCccccccccccccccccccccccccccc
Confidence 45789999999999999999999998875433333221 1111112222222
Q ss_pred ------------eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEe
Q 024385 117 ------------KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184 (268)
Q Consensus 117 ------------~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~ 184 (268)
+.+.+|||||++++...+..+++.+|++|+|+|++++ .++..+..|+..+... .+.|+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~-~s~~~~~~~~~~i~~~-----~~~piilv~ 154 (208)
T 3clv_A 81 NQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS-NTLDRAKTWVNQLKIS-----SNYIIILVA 154 (208)
T ss_dssp ----CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHH-----SCCEEEEEE
T ss_pred cccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHhh-----CCCcEEEEE
Confidence 6899999999999999999999999999999999997 7788888888888764 349999999
Q ss_pred ecCCCCC-CCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHH
Q 024385 185 NKTDKVT-AHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 262 (268)
Q Consensus 185 nK~Dl~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l 262 (268)
||+|+.. ....+++.+.+. ..+++++++||++|. +++++++|
T Consensus 155 NK~D~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~Sa~~~~~i~~l~~~l 198 (208)
T 3clv_A 155 NKIDKNKFQVDILEVQKYAQ------------------------------------DNNLLFIQTSAKTGTNIKNIFYML 198 (208)
T ss_dssp ECTTCC-CCSCHHHHHHHHH------------------------------------HTTCEEEEECTTTCTTHHHHHHHH
T ss_pred ECCCcccccCCHHHHHHHHH------------------------------------HcCCcEEEEecCCCCCHHHHHHHH
Confidence 9999422 123333332222 123589999999998 99999999
Q ss_pred Hhhc
Q 024385 263 REQV 266 (268)
Q Consensus 263 ~~~~ 266 (268)
.+.+
T Consensus 199 ~~~~ 202 (208)
T 3clv_A 199 AEEI 202 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 67
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.94 E-value=1.1e-26 Score=182.71 Aligned_cols=163 Identities=18% Similarity=0.293 Sum_probs=119.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-hhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-PKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~ 140 (268)
.+.++|+++|++|||||||++++.++.+.....++... ......+..++..+.+.+|||||++++. ..+..+++.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV----DFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC----CEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce----EEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 45689999999999999999999998875433333221 2222233445666789999999999888 788999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++.. .+.+
T Consensus 94 ~d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~~-------------- 155 (189)
T 1z06_A 94 VHAVVFVYDMTNM-ASFHSLPAWIEECKQHLL--ANDIPRILVGNKCDLRSAIQVPTDLAQ-KFAD-------------- 155 (189)
T ss_dssp CCEEEEEEETTCH-HHHHTHHHHHHHHHHHCC--CSCCCEEEEEECTTCGGGCCSCHHHHH-HHHH--------------
T ss_pred CCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceeCHHHHH-HHHH--------------
Confidence 9999999999997 778888888888876532 26899999999999975432 22211 1111
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccC---C-chhHHHHHHhhcC
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG---E-ISQVEQFIREQVK 267 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g---~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++| + +++++++|.+.++
T Consensus 156 ---------------------~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 156 ---------------------THSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp ---------------------HTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred ---------------------HcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 12347999999999 7 9999999988764
No 68
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=9.9e-27 Score=186.09 Aligned_cols=162 Identities=18% Similarity=0.263 Sum_probs=119.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+.....++. +.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCC----SCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc----cceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 457899999999999999999999887744333332 2222222344466667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+.......+..+.+.+
T Consensus 94 d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----------------- 152 (213)
T 3cph_A 94 MGIILVYDVTDE-RTFTNIKQWFKTVNEHAN---DEAQLLLVGNKSDMETRVVTADQGEALAK----------------- 152 (213)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHTT---TCSEEEEEEECTTCSSCCSCHHHHHHHHH-----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCcccccCHHHHHHHHH-----------------
Confidence 999999999997 678888888887776432 57999999999999543222111111111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 153 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 153 ------------------ELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp ------------------HHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998754
No 69
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=182.46 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=114.2
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+..+|+++|++|||||||++++.++.+...+.+ +++ ..+...+..++..+.+.+|||||++++...+..+++.
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~----t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 91 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIP----TAF-DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTN 91 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------C----CSS-EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----ccc-ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCC
Confidence 35688999999999999999999998876433322 222 2223334556666789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+|++|+|+|+++. .++..+. .|+..+.... .+.|+++|+||+|+....... ..+.. . ....+...
T Consensus 92 ~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~---~~~~~----~--~~~~v~~~ 157 (201)
T 2q3h_A 92 TDIFLLCFSVVSP-SSFQNVSEKWVPEIRCHC----PKAPIILVGTQSDLREDVKVL---IELDK----C--KEKPVPEE 157 (201)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----SSSCEEEEEECGGGGGCHHHH---HHHHT----T--TCCCCCHH
T ss_pred CcEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhchhhh---hhhcc----c--ccccCCHH
Confidence 9999999999997 7788876 5766665532 589999999999997532110 00000 0 00000000
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ..+....+..++++|||++|. +++++++|.+.+
T Consensus 158 ~~------------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 158 AA------------KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp HH------------HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH------------HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 00 001110122379999999998 999999998754
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=1.8e-26 Score=176.67 Aligned_cols=160 Identities=14% Similarity=0.225 Sum_probs=119.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
..+|+++|++|||||||++++.++.+.....++ .+ ..+......++..+.+.+|||||++++...+..+++.+|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 77 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPT----IE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTT----CC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCc----cc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCE
Confidence 468999999999999999999988764332222 22 1222334445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.......+..+.+.+
T Consensus 78 ~i~v~d~~~~-~~~~~~~~~~~~i~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------------------- 135 (166)
T 2ce2_X 78 FLCVFAINNT-KSFEDIHQYREQIKRVKD--SDDVPMVLVGNKSDLAARTVESRQAQDLAR------------------- 135 (166)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSCCCSCHHHHHHHHH-------------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEEchhhhhcccCHHHHHHHHH-------------------
Confidence 9999999987 778888888877766432 148999999999999763322222222211
Q ss_pred cccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 224 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 136 ----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 136 ----------------SYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ----------------HHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998765
No 71
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.94 E-value=1.5e-26 Score=178.18 Aligned_cols=159 Identities=15% Similarity=0.111 Sum_probs=109.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-hHhhhccCCCE
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP-KLDEFLPQAAG 143 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~d~ 143 (268)
++|+++|++|||||||++++.+..+......+. +.......+..++..+.+.+|||||++++.. ....+++.+|+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~ 78 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMEN----SEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDA 78 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC----------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCC----cCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCE
Confidence 689999999999999999998776533222211 1222333344567678999999999998876 56677889999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. +++..+..|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------------------ 137 (169)
T 3q85_A 79 FLIVFSVTDR-RSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLARSREVSLEEGRHLAG------------------ 137 (169)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------------------
T ss_pred EEEEEECCCh-HHHHHHHHHHHHHHhccc--CCCCCEEEEeeCcchhhcccCCHHHHHHHHH------------------
Confidence 9999999997 788999999998887542 14899999999999974332 222221111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 138 ------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 138 ------------------TLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998764
No 72
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=3.3e-26 Score=178.19 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=110.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccC-CceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKK-GKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
.+..+|+++|++|||||||++++.++.+.....++..... ....+..+ +..+.+.+|||||++++...+..+++.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 81 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----LTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRG 81 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC----EEEEECCSSSCCEEEEEECCC----------CCSTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE----EEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhc
Confidence 4678999999999999999999999887543333332221 12223333 444789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCC-ccCCCCcEEEEeecCCCCCCC---CHHHHHHHHHHHHHHHHHhhhcc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH---TKEFIRKQMEKEIDKLRASRSAV 216 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~piivv~nK~Dl~~~~---~~~~~~~~l~~~l~~~~~~~~~~ 216 (268)
+|++|+|+|+++. .++..+..|+..+..... ....+.|+++|+||+|+.... ..++..+....
T Consensus 82 ~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~------------ 148 (182)
T 1ky3_A 82 ADCCVLVYDVTNA-SSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS------------ 148 (182)
T ss_dssp CCEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH------------
T ss_pred CCEEEEEEECCCh-HHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh------------
Confidence 9999999999997 778888888887766421 112678999999999996432 22222111110
Q ss_pred ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 217 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++||++|+ +++++++|.+.+
T Consensus 149 -----------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 -----------------------LGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp -----------------------TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------------cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 234579999999998 999999998754
No 73
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=7e-27 Score=184.10 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=122.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+.....++....... ......+..+.+.+|||||++.+...+..+++.+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV----KTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEE----EEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEE----EEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 356899999999999999999999988755444444322211 1223344457899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++.. .+.+
T Consensus 97 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~--------------- 156 (191)
T 3dz8_A 97 MGFILMYDITNE-ESFNAVQDWATQIKTYS---WDNAQVILVGNKCDMEEERVVPTEKGQ-LLAE--------------- 156 (191)
T ss_dssp CEEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHH-HHHH---------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHH-HHHH---------------
Confidence 999999999997 77888888888877643 26899999999999965432 22221 1111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 157 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 157 --------------------QLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp --------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123479999999998 999999988754
No 74
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=181.82 Aligned_cols=163 Identities=18% Similarity=0.135 Sum_probs=117.3
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+..+|+++|++|||||||++++.++.+...+.+ +.+.. +......++..+.+.+|||||+++++.. ..+++.
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~----t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~ 91 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDP----NLEDT-YSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNW 91 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCT----TCCEE-EEEEEEETTEEEEEEEEECCC---CCCT-HHHHTT
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCC----Cccce-eeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhh
Confidence 35678999999999999999999999886543332 22222 2223445666689999999999988775 679999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++++|||+++. .++..+..|+..+.........+.|+++|+||+|+..... .++..+...
T Consensus 92 ~~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--------------- 155 (187)
T 3c5c_A 92 AHAFLVVYSVDSR-QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG--------------- 155 (187)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH---------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH---------------
Confidence 9999999999997 7899999898888764211115899999999999965432 222222111
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeee-ccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG-LTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa-~~g~-i~~l~~~l~~~~ 266 (268)
..++++++||| ++|+ +++++++|.+.+
T Consensus 156 ---------------------~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 156 ---------------------RFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp ---------------------HHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred ---------------------HcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 11347999999 8998 999999998764
No 75
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.94 E-value=3.1e-26 Score=180.20 Aligned_cols=162 Identities=19% Similarity=0.286 Sum_probs=119.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCc---------eeeEEEEeCCCCCCchhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGK---------IKPVHLVDVPGHSRLRPK 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~DtpG~~~~~~~ 133 (268)
...+|+++|++|||||||+++|.++.+.....++...... .......++. .+.+.+|||||++++...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR---EKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE---EEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee---eEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4579999999999999999999998775433333322111 0112222332 578999999999999999
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHH
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~ 211 (268)
+..+++.+|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+.. +
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~---- 155 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNE-QSFLNVRNWISQLQMHAY--SENPDIVLCGNKSDLEDQRAVKEEEARELA----E---- 155 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSS--SSSCCEEEEEECTTCGGGCCSCHHHHHHHH----H----
T ss_pred HHHHHcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHHHH----H----
Confidence 99999999999999999997 778888888888776532 15889999999999976332 22222211 1
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 156 ----------------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 156 ----------------------------KYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp ----------------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------------------HcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998754
No 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=2.4e-26 Score=183.05 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=122.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|+|||||+++|.++.+...+. ++.+.......+..++..+.+.+|||||++++...+..+++.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 81 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK----ATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGA 81 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC----CCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCC----CcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCC
Confidence 467899999999999999999999987643332 2333333333445566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCC-ccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+..... ....+.|+++|+||+|+.... ..++..+....
T Consensus 82 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------------- 145 (207)
T 1vg8_A 82 DCCVLVFDVTAP-NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS--------------- 145 (207)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---------------
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh---------------
Confidence 999999999997 678888888877765421 011478999999999997432 22222211110
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++++++||++|. +++++++|.+.+
T Consensus 146 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 --------------------KNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp --------------------TTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 234579999999998 999999998764
No 77
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.94 E-value=1.3e-26 Score=185.41 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=117.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|+|||||++++.++.+...+.++.... +...+..++..+.+.+|||||++++...+..+++.+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-----~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 81 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-----FSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA 81 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC-----EEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee-----EEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC
Confidence 356899999999999999999999988754433333211 122344566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH------HHHHHHHHHHHHHHhhh
Q 024385 142 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF------IRKQMEKEIDKLRASRS 214 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~------~~~~l~~~l~~~~~~~~ 214 (268)
|++|+|+|+++. .++..+. .|+..+.... .+.|+++|+||+|+........ ..+...+..+.
T Consensus 82 d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~------ 150 (212)
T 2j0v_A 82 DIFVLAFSLISK-ASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ------ 150 (212)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH------
Confidence 999999999997 7788876 6666665532 5899999999999965421100 01111111111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+..+++++||++|+ +++++++|.+.+
T Consensus 151 -------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 151 -------------------------IGAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp -------------------------HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------------cCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 112379999999998 999999998764
No 78
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=2.3e-26 Score=179.84 Aligned_cols=173 Identities=13% Similarity=0.137 Sum_probs=118.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+..+|+++|++|||||||++++.++.+...+.++... .+......++..+.+.+|||||++++...+..+++.+|
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 78 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-----NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 78 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-----EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccc-----eeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCc
Confidence 4579999999999999999999988775443333221 11223345666688999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|+|++++ .++.... .|+..+.... .+.|+++|+||+|+.......+ .+.. . ....+...+.
T Consensus 79 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~---~~~~----~--~~~~v~~~~~ 144 (186)
T 1mh1_A 79 VSLICFSLVSP-ASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIE---KLKE----K--KLTPITYPQG 144 (186)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTSCEEEEEECHHHHTCHHHHH---HHHH----T--TCCCCCHHHH
T ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHHhC----CCCCEEEEeEcccccccchhhh---hhcc----c--ccccCCHHHH
Confidence 99999999997 6787776 5666655432 4899999999999975421111 1100 0 0000000000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+....+..++++|||++|+ +++++++|.+.+
T Consensus 145 ------------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 145 ------------LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp ------------HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------HHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 001111122389999999998 999999998875
No 79
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.4e-26 Score=177.31 Aligned_cols=163 Identities=13% Similarity=0.183 Sum_probs=118.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|||||||++++.++.+.....++.... +......++..+.+.+|||||++++...+..+++.+|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~-----~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~ 76 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-----YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGH 76 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-----EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcccc-----EEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCC
Confidence 45799999999999999999999987754333332211 1222334555578999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++++|+|+++. .++.....|+..+..... ...+.|+++|+||+|+........ ..+.+. .
T Consensus 77 ~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~---~-------------- 137 (172)
T 2erx_A 77 AFILVYSITSR-QSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALA---R-------------- 137 (172)
T ss_dssp EEEEEEETTCH-HHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHH---H--------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccccccCHHHHHHHH---H--------------
Confidence 99999999987 667777777766655321 115789999999999976433211 111111 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.+.
T Consensus 138 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 138 ------------------TWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ------------------HhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 123579999999998 9999999998764
No 80
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=183.95 Aligned_cols=161 Identities=21% Similarity=0.263 Sum_probs=116.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+.....++... ......+..++..+.+.+|||||++++...+..+++.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 98 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV----EFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 98 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------C----CEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccc----eeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC
Confidence 34689999999999999999999988775433333221 12222334456667999999999998888899999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+..... ..+..+...
T Consensus 99 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~---------------- 158 (200)
T 2o52_A 99 AGALLVYDITSR-ETYNSLAAWLTDARTLAS---PNIVVILCGNKKDLDPEREVTFLEASRFAQ---------------- 158 (200)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHTC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhcC---CCCcEEEEEECCCcccccccCHHHHHHHHH----------------
Confidence 999999999997 778888888888766432 6899999999999975432 222221111
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 159 --------------------~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 159 --------------------ENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp --------------------HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998754
No 81
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=182.10 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=118.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh-hHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP-KLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~ 140 (268)
...++|+++|++|||||||++++.+..+..... ++.+...+...+.+++..+.+.+|||+|++++.. ....+++.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE----PENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT----TTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCC----CCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 456899999999999999999997644321111 1122222233345567778999999999998765 67788999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+ +.+
T Consensus 97 ~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a~-------------- 158 (195)
T 3cbq_A 97 GDAFLIVFSVTDR-RSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLARSREVSLEEGRH-LAG-------------- 158 (195)
T ss_dssp CSEEEEEEETTCH-HHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCTTTCCSCHHHHHH-HHH--------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEeechhccccCCcCHHHHHH-HHH--------------
Confidence 9999999999997 788889999988876432 14899999999999975432 222221 111
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|. +++++++|.+.+
T Consensus 159 ---------------------~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 159 ---------------------TLSCKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp ---------------------HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------HhCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998764
No 82
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=6e-26 Score=181.12 Aligned_cols=174 Identities=15% Similarity=0.164 Sum_probs=115.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||++++.++.+...+.++ .+... ......++..+.+.+|||||++++...+..+++.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPT----VFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEE-EEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTC
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCc----ccceE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCC
Confidence 45679999999999999999999998875433222 22221 12244566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++|+|+|+++. .++..+ ..|+..+.... .+.|+++|+||+|+...... .+.+. .+.. ..+...+
T Consensus 98 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~---~~~~~----~~~~--~~v~~~~ 163 (207)
T 2fv8_A 98 DVILMCFSVDSP-DSLENIPEKWVPEVKHFC----PNVPIILVANKKDLRSDEHV---RTELA----RMKQ--EPVRTDD 163 (207)
T ss_dssp CEEEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGGGCHHH---HHHHH----HTTC--CCCCHHH
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhhhccccc---hhhhh----hccc--CCCCHHH
Confidence 999999999997 677777 45555554421 58999999999999754221 11111 0000 0000000
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ..+....+..++++|||++|+ +++++++|.+.+
T Consensus 164 ~------------~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 164 G------------RAMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp H------------HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H------------HHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0 001111122379999999998 999999998763
No 83
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.6e-26 Score=183.40 Aligned_cols=161 Identities=19% Similarity=0.266 Sum_probs=117.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+...+.++.... .....+..++..+.+.+|||||++++...+..+++.+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 86 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVE----FATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA 86 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCS----EEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce----eEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccC
Confidence 345799999999999999999999988754333332221 1222234456667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhhhccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
|++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+.. +
T Consensus 87 d~vilV~D~~~~-~s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------ 146 (223)
T 3cpj_B 87 VGALIVYDISKS-SSYENCNHWLSELRENA---DDNVAVGLIGNKSDLAHLRAVPTEESKTFA----Q------------ 146 (223)
T ss_dssp CEEEEEEC-CCH-HHHHHHHHHHHHHHHHC---C--CEEEEEECCGGGGGGCCSCHHHHHHHH----H------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccccCHHHHHHHH----H------------
Confidence 999999999997 78888888888887653 26889999999999975432 22222111 1
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 147 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 147 --------------------ENQLLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp --------------------HTTCEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred --------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123589999999998 999999998765
No 84
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=3.3e-26 Score=181.02 Aligned_cols=164 Identities=13% Similarity=0.178 Sum_probs=119.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+.....++... .+......++..+.+.+|||||++++...+..+++.+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-----~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 80 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIED-----TYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCE-----EEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccc-----ceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence 56789999999999999999999998775444333321 1122233456567899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. .++..+..|+..+..... ...+.|+++|+||+|+.......+....+. .
T Consensus 81 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~-------------- 141 (199)
T 2gf0_A 81 HAFILVFSVTSK-QSLEELGPIYKLIVQIKG-SVEDIPVMLVGNKCDETQREVDTREAQAVA---Q-------------- 141 (199)
T ss_dssp SEEEEEEETTCH-HHHHTTHHHHHHHHHHHS-CGGGSCEEEEEECTTCSSCSSCHHHHHHHH---H--------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCCccccCHHHHHHHH---H--------------
Confidence 999999999986 667777777655544211 014789999999999976332211111111 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|. +++++++|.+.+.
T Consensus 142 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 142 ------------------EWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred ------------------HhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 112479999999998 9999999988653
No 85
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=3.7e-26 Score=182.18 Aligned_cols=120 Identities=16% Similarity=0.128 Sum_probs=94.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|++|||||||+++|.++.+...+.++. +.. +...+..++..+.+.+|||||++++...+..+++.+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~----~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----FEN-YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----EEE-EEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc----cee-EEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 456899999999999999999999988754333332 211 122344566668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
|++|+|||+++. .++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 101 d~~ilv~D~~~~-~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 101 DAVLICFDISRP-ETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCEEEEEEECGGGGG
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHHC----CCCCEEEEEechhhcc
Confidence 999999999997 778877 56666665432 5899999999999974
No 86
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=5.3e-26 Score=181.86 Aligned_cols=163 Identities=17% Similarity=0.123 Sum_probs=116.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-chhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-LRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-~~~~~~~~~~~ 140 (268)
...+||+++|++|||||||++++.+.... +.+..++++...+...+.+++..+.+.+|||+|++. ++.....|++.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~---~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDS---MDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCT---TCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC---CCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 45689999999999999999999965431 111111122222333455677777889999999886 45556778899
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++|+|||+++. .++..+..|+..+..... ..++|+++|+||+|+...... ++.. .+..
T Consensus 112 a~~~ilVydvt~~-~sf~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~~r~v~~~e~~-~~a~-------------- 173 (211)
T 2g3y_A 112 GDAYLIVYSITDR-ASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGR-ACAV-------------- 173 (211)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHTSGG--GTTSCEEEEEECTTCGGGCCSCHHHHH-HHHH--------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHHhC--CCCCcEEEEEEChHHhcCceEeHHHHH-HHHH--------------
Confidence 9999999999997 789998888877765321 257999999999999753322 2111 1111
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|+ +++++++|.+.+
T Consensus 174 ---------------------~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 174 ---------------------VFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp ---------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999998 999999998754
No 87
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=3.9e-26 Score=180.54 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=119.7
Q ss_pred HHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh
Q 024385 56 LQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD 135 (268)
Q Consensus 56 ~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 135 (268)
++.....+..+|+++|++|||||||++++.++.+...+.++ .+. .+......++..+.+.+|||||+++ ...+.
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t----~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~ 93 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPT----LES-TYRHQATIDDEVVSMEILDTAGQED-TIQRE 93 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTT----CCE-EEEEEEEETTEEEEEEEEECCCCCC-CHHHH
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCC----CCc-eEEEEEEECCEEEEEEEEECCCCCc-ccchh
Confidence 33344467899999999999999999999998774433222 221 2223344566668899999999998 77888
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHHHHhh
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~ 213 (268)
.+++.+|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+...
T Consensus 94 ~~~~~~d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---------- 160 (196)
T 2atv_A 94 GHMRWGEGFVLVYDITDR-GSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLDHSRQVSTEEGEKLAT---------- 160 (196)
T ss_dssp HHHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHT--TSCCCEEEEEECGGGGGGCCSCHHHHHHHHH----------
T ss_pred hhhccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhhC--CCCCcEEEEEECcccccccccCHHHHHHHHH----------
Confidence 999999999999999997 678888888877766432 26899999999999976432 222221111
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC--chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 161 --------------------------~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 161 --------------------------ELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp --------------------------HHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred --------------------------HhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 113479999999985 999999998764
No 88
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.94 E-value=3.8e-26 Score=179.52 Aligned_cols=161 Identities=15% Similarity=0.197 Sum_probs=109.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|.+|||||||+++|.++.+.....+ +.+ ..+......++..+.+.+|||||++++...+..+++.+
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP----TIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCT----TCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTC
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCC----ccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcC
Confidence 3458999999999999999999998876432222 222 22223344566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.... ..++..+...
T Consensus 94 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----------------- 153 (190)
T 3con_A 94 EGFLCVFAINNS-KSFADINLYREQIKRVKD--SDDVPMVLVGNKCDLPTRTVDTKQAHELAK----------------- 153 (190)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHhC--CCCCeEEEEEECCcCCcccCCHHHHHHHHH-----------------
Confidence 999999999997 678888888877765421 1579999999999997632 2222222211
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 154 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 154 -------------------SYGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp -------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998754
No 89
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.94 E-value=4e-26 Score=183.14 Aligned_cols=174 Identities=20% Similarity=0.194 Sum_probs=101.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|++|||||||++++.++.+...+.++ .+ ..+......++..+.+.+|||||++++...+..+++.+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t----~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 106 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT----VF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDA 106 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCC----CC-EEEEEEEEETTEEEEEEEEEC---------------CE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc----cc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccC
Confidence 45689999999999999999999988764433222 22 12223344566667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++++|+|+++. .++..+. .|+..+.... .+.|+++|+||+|+.......+..+... ...++..+
T Consensus 107 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~---------~~~v~~~~ 172 (214)
T 2j1l_A 107 SVLLLCFDVTSP-NSFDNIFNRWYPEVNHFC----KKVPIIVVGCKTDLRKDKSLVNKLRRNG---------LEPVTYHR 172 (214)
T ss_dssp EEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----SSCCEEEEEECGGGGSCHHHHHHHHHTT---------CCCCCHHH
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhhccchhhhhhcccc---------cCcccHHH
Confidence 999999999997 7788876 5666665432 5899999999999976432211110000 00000000
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. .+....+..++++|||++|. +++++++|.+.+
T Consensus 173 ~~------------~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 173 GQ------------EMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HH------------HHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HH------------HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 00 01110122379999999998 999999998764
No 90
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.94 E-value=4.9e-26 Score=180.80 Aligned_cols=174 Identities=15% Similarity=0.183 Sum_probs=117.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|++|||||||++++.++.+...+.++..... ...+..++..+.+.+|||||++++...+..+++.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 97 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-----IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC-----EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE-----EEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCC
Confidence 3467999999999999999999999887544333322211 11234456667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++++|+|+++. .++..+ ..|+..+.... .+.|+++|+||+|+....... +.+.+ .. ...+..++
T Consensus 98 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~---~~~~~----~~--~~~v~~~~ 163 (201)
T 2gco_A 98 DVILMCFSIDSP-DSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRQDEHTR---RELAK----MK--QEPVRSEE 163 (201)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGTTCHHHH---HHHHT----TT--CCCCCHHH
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEecHHhhcCccch---hhhcc----cc--cCcCCHHH
Confidence 999999999997 678877 45555444321 589999999999997542211 11110 00 00000000
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. .+....+..++++|||++|+ +++++++|.+.+
T Consensus 164 ~~------------~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 164 GR------------DMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HH------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH------------HHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 01111122379999999998 999999998763
No 91
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.93 E-value=9.7e-26 Score=192.14 Aligned_cols=162 Identities=22% Similarity=0.370 Sum_probs=119.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
+.++|+++|++|||||||+++|.++.+... . |+.+..... +...+ +.+.+|||||++.+...+..+++.+|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~----pT~~~~~~~--~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad 234 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-I----PTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQ 234 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-E----EETTEEEEE--EEETT--EEEEEEECC-----CCSHHHHHTTEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-c----cccceEEEE--EecCc--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 345899999999999999999998876321 1 222222211 22233 78999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|||+++. .++..+..++..++.... ..++|+++|+||+|+......+++.+.+...
T Consensus 235 ~vilV~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~----------------- 294 (329)
T 3o47_A 235 GLIFVVDSNDR-ERVNEAREELMRMLAEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLH----------------- 294 (329)
T ss_dssp EEEEEEETTCS-SSHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTCT-----------------
T ss_pred EEEEEEECCch-HHHHHHHHHHHHHHhhhc--cCCCeEEEEEECccCCcccCHHHHHHHhchh-----------------
Confidence 99999999997 889999999998887543 2689999999999998766655443332210
Q ss_pred CcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 223 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+. ...+++++++||++|. |++++++|.+.+.
T Consensus 295 -------------~~-~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 295 -------------SL-RHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp -------------TC-CSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred -------------hh-hcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 00 1345789999999999 9999999988764
No 92
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.93 E-value=6.1e-27 Score=188.70 Aligned_cols=160 Identities=15% Similarity=0.175 Sum_probs=121.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
...++|+++|.+|||||||+++++.+.+... ..++.+...........+..+.+.+|||||++.+...+..+++.+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCE----EETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 4568999999999999999999776655322 223333222333344456668999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|+++. .++..+..|+..+.... .+.|+++|+||+|+.......+..+...
T Consensus 89 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------------------ 145 (221)
T 3gj0_A 89 QCAIIMFDVTSR-VTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVKAKSIVFHR------------------ 145 (221)
T ss_dssp CEEEEEEETTCH-HHHHTHHHHHHHHHHHS----TTCCEEEEEECTTSSSCSSCGGGCCHHH------------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECCccccccccHHHHHHHH------------------
Confidence 999999999997 77888888988887753 5899999999999976432211110000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|. +++++++|.+.+
T Consensus 146 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 146 ------------------KKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp ------------------HHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 124589999999998 999999998764
No 93
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.93 E-value=2.6e-26 Score=184.36 Aligned_cols=162 Identities=17% Similarity=0.259 Sum_probs=118.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCc----------eeeEEEEeCCCCCCch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGK----------IKPVHLVDVPGHSRLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~DtpG~~~~~ 131 (268)
.+.++|+++|++|||||||+++|.++.+.....++... ......+.+++. .+.+.+|||||++++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI----DFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEE----EEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeE----EEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 34579999999999999999999998875433333321 111112222332 4789999999999999
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKL 209 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~ 209 (268)
..+..+++.+|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+.. +
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~-~s~~~~~~~l~~i~~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~-- 169 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAY--CENPDIVLIGNKADLPDQREVNERQARELA----D-- 169 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCT--TTCCEEEEEEECTTCGGGCCSCHHHHHHHH----H--
T ss_pred hHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--cCCCCEEEEEECCccccccccCHHHHHHHH----H--
Confidence 9999999999999999999997 678888888776654321 15789999999999976432 22221111 1
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++|+ +++++++|.+.+
T Consensus 170 ------------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 170 ------------------------------KYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp ------------------------------HTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ------------------------------HCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 113479999999998 999999998754
No 94
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.93 E-value=3.2e-26 Score=184.01 Aligned_cols=163 Identities=16% Similarity=0.237 Sum_probs=117.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccc-ccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES-TKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
...++|+++|++|||||||+++|+++.+... ..++.+........ ...+..+.+.+|||||++++...+..+++.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKN----YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG 84 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCE----EETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence 4678999999999999999999998876432 22333222222222 223333689999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
+|++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+....... .+. ...
T Consensus 85 ~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~--~~~----~~~------------ 142 (218)
T 4djt_A 85 ASGAILFFDVTSR-ITCQNLARWVKEFQAVVG---NEAPIVVCANKIDIKNRQKIS--KKL----VME------------ 142 (218)
T ss_dssp CSEEEEEEETTCH-HHHHTHHHHHHHHHHHHC---SSSCEEEEEECTTCC----CC--HHH----HHH------------
T ss_pred CCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCccccccC--HHH----HHH------------
Confidence 9999999999997 778888888887766432 568999999999997532111 011 111
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.. ..++++++|||++|. +++++++|.+.+
T Consensus 143 ---------------~~~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 143 ---------------VLK-GKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp ---------------HTT-TCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred ---------------HHH-HcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 000 234589999999998 999999998764
No 95
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.93 E-value=3.1e-26 Score=182.38 Aligned_cols=163 Identities=12% Similarity=0.159 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--CcccccceeeccccceEEeecccccCCc--eeeEEEEeCCCCCCchhhHhhhc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSESTKKGK--IKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
...+|+++|++|||||||+++|.++ .+...+.++ .+.......+..++. .+.+.+|||||++++...+..++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 94 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMT----SGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYW 94 (208)
T ss_dssp EEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCc----cceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHH
Confidence 4579999999999999999999988 554323222 221222223344554 57899999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC-CC--CHHHHHHHHHHHHHHHHHhhhc
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT-AH--TKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~-~~--~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
+.+|++|+|+|+++. .++..+..|+..+.........+.|+++|+||+|+.. .. ..++..+...
T Consensus 95 ~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~------------ 161 (208)
T 2yc2_C 95 NGVYYAILVFDVSSM-ESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT------------ 161 (208)
T ss_dssp CCCCEEEEEEETTCH-HHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH------------
T ss_pred hhCcEEEEEEECCCH-HHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH------------
Confidence 999999999999997 7788889998888765320014889999999999975 22 2222222111
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeecc-CC-chhHHHHHHhhc
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT-GE-ISQVEQFIREQV 266 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~-g~-i~~l~~~l~~~~ 266 (268)
..++++++|||++ |+ +++++++|.+.+
T Consensus 162 ------------------------~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 162 ------------------------TNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp ------------------------HTTCEEEECCC-------CHHHHHHHHHH
T ss_pred ------------------------HcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 1125899999999 98 999999998754
No 96
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.93 E-value=6.8e-25 Score=170.32 Aligned_cols=163 Identities=16% Similarity=0.248 Sum_probs=112.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+.++|+++|++|||||||++++.++.+.....++........ .+..++ ..+.+|||||++++...+..+++.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY----QVTVND--KKITFLDTPGHEAFTTMRARGAQVT 79 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCC----EEEETT--EEEEESCCCSSSSSSCSCCSSCCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEE----EEEeCC--ceEEEEECCCCHHHHHHHHHHHhhC
Confidence 5788999999999999999999999887544433332222211 122344 4788999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++++|+|+++. . .......+..+.. .+.|+++|+||+|+... ..+++.+.+. .. .
T Consensus 80 d~~i~v~d~~~~-~-~~~~~~~l~~~~~------~~~p~ilv~nK~Dl~~~-~~~~~~~~~~----~~----~------- 135 (178)
T 2lkc_A 80 DIVILVVAADDG-V-MPQTVEAINHAKA------ANVPIIVAINKMDKPEA-NPDRVMQELM----EY----N------- 135 (178)
T ss_dssp CEEEEEEETTCC-C-CHHHHHHHHHHGG------GSCCEEEEEETTTSSCS-CHHHHHHHHT----TT----T-------
T ss_pred CEEEEEEECCCC-C-cHHHHHHHHHHHh------CCCCEEEEEECccCCcC-CHHHHHHHHH----hc----C-------
Confidence 999999999885 2 3334444443332 57899999999999764 2222222211 00 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.........+++++|||++|+ +++++++|.+.+
T Consensus 136 ------------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 136 ------------LVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp ------------CCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred ------------cChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 000111234789999999999 999999998653
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.93 E-value=7.3e-25 Score=173.31 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=111.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhH---hhh
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKL---DEF 137 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~---~~~ 137 (268)
..+.++|+++|++|||||||++++.+..... ............... + .++..+.+.+|||||+++|.... ..+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~--~-~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDD--I-SNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEE--E-CCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeee--c-cCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 3578999999999999999999888753322 222222222211111 0 12444789999999999987776 899
Q ss_pred ccCCCEEEEEEeCCCCC-CCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH-HHHHHHHHhhhc
Q 024385 138 LPQAAGIVFVVDALEFL-PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME-KEIDKLRASRSA 215 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~-~~l~~~~~~~~~ 215 (268)
++.+|++|+|||+++.. +++..+..|+..+... ..+.|+++|+||+|+.......+....+. ...+.+...
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~--- 165 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV----NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA--- 165 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc----CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh---
Confidence 99999999999999851 2345555566555332 26899999999999975432211111121 111111000
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ...+++|++|||++ + +++++++|.+.+
T Consensus 166 --------------------~~-~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 166 --------------------GL-EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp --------------------TC-TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred --------------------hh-hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 00 02357899999999 8 999999998764
No 98
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=5.8e-25 Score=197.62 Aligned_cols=163 Identities=23% Similarity=0.361 Sum_probs=124.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
.+..+|+++|.+|||||||+++|+++.+.. ..+|...... .+...+ +.+.+|||||++.++..+..+++.+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~------~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~a 390 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE------TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGT 390 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE------EEESSS--CEEEEEEECCCGGGSGGGGGGGTTC
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE------EEEeCC--EEEEEEECCCcHHHHHHHHHHhccC
Confidence 346899999999999999999999987532 2232222211 122233 7899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|||+++. .++..+..|+..++.... ..++|+++|+||+|+......+++.+.+..
T Consensus 391 d~~i~V~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~----------------- 450 (497)
T 3lvq_E 391 QGLIFVVDCADR-DRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAMKPHEIQEKLGL----------------- 450 (497)
T ss_dssp CEEEEEEETTCG-GGHHHHHHHHHHHHTSGG--GTTCEEEEEEECCSSSSCCCHHHHHHHTTC-----------------
T ss_pred CEEEEEEECcch-hHHHHHHHHHHHHhhhhh--cCCCcEEEEEECCCCCcCCCHHHHHHHhch-----------------
Confidence 999999999997 789999999999887533 268999999999999876555443322110
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
. +. ....+++++|||++|+ |+++++||.+.+.
T Consensus 451 --------~-----~~-~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 451 --------T-----RI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp --------T-----TC-CSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred --------h-----hh-hcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0 00 0245689999999999 9999999998764
No 99
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.92 E-value=3.8e-25 Score=174.48 Aligned_cols=163 Identities=17% Similarity=0.121 Sum_probs=112.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-chhhHhhhccC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-LRPKLDEFLPQ 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-~~~~~~~~~~~ 140 (268)
...++|+++|++|||||||++++.+.... ..+..++++...+...+.+++..+.+.+|||+|... ++.....|++.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~ 80 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDS---MDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 80 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCC---C----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCC---cCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhccc
Confidence 35689999999999999999999864321 111111122222333455677777889999999876 45566778889
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHHHHhhhcccc
Q 024385 141 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+|++++|||+++. +++.....|+..+..... ..+.|+++|+||+|+...... ++.. .+..
T Consensus 81 ~~~~i~v~dv~~~-~s~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~~r~v~~~~~~-~~a~-------------- 142 (192)
T 2cjw_A 81 GDAYLIVYSITDR-ASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRXREVSVSEGR-AXAV-------------- 142 (192)
T ss_dssp CSEEEEEEETTCH-HHHHHHHHHHHHHHHHTT--TSCCCEEEEEECTTCGGGCCSCHHHHH-HHHH--------------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHhhC--CCCCeEEEEEechhhhccccccHHHHH-HHHH--------------
Confidence 9999999999997 788888888777665321 157899999999999653321 1111 1110
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++|++|||++|. +++++++|.+.+
T Consensus 143 ---------------------~~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 143 ---------------------VFDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp ---------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------HhCCceEEeccccCCCHHHHHHHHHHHH
Confidence 123479999999998 999999998754
No 100
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.92 E-value=5.7e-27 Score=185.88 Aligned_cols=162 Identities=19% Similarity=0.294 Sum_probs=113.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 142 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d 142 (268)
..++|+++|++|||||||+++|.++.+.....++... ......+..++..+.+.+|||||++++...+..+++.+|
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV----DFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCC----SEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccc----eEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 3579999999999999999999988775433333222 122223344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHHHHhhhccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
++|+|+|+++. .++..+..|+..+..... .+.|+++|+||+|+........ ..+.+
T Consensus 108 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~Dl~~~~~v~~~~~~~~------------------- 164 (199)
T 3l0i_B 108 GIIVVYDVTDQ-ESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLTTKKVVDYTTAKEF------------------- 164 (199)
T ss_dssp EEEECC-CCCS-HHHHHHHHHHHHHHSCC----CCSEEEEC-CCSSCC--CCCCSCC-CHH-------------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcc---CCCCEEEEEECccCCccccCCHHHHHHH-------------------
Confidence 99999999997 788899998888866432 5899999999999965422100 00000
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.. ..+++++++||++|+ +++++++|.+.+.
T Consensus 165 ---------------~~-~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 165 ---------------AD-SLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp ---------------HH-TTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred ---------------HH-HcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00 223578999999999 9999999988764
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.92 E-value=1e-24 Score=183.09 Aligned_cols=168 Identities=15% Similarity=0.200 Sum_probs=110.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh---hHhhhccCCC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP---KLDEFLPQAA 142 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~d 142 (268)
||+++|++|||||||++++.++.++. ...+..++.+..... + +..+.++||||||+++|+. ....|+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~-~~~~~~~Tig~~~~~----v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL-DTLYLESTSNPSLEH----F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG-GGTTCCCCCSCCCEE----E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC-ccceecCeeeeeeEE----E-ccEEEEEEEECCCchhccchhhhhhhhccCCC
Confidence 68999999999999999988664432 222233443322211 1 1237899999999999974 4689999999
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024385 143 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 222 (268)
Q Consensus 143 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 222 (268)
++|+|||+++. +.....|+..++.......+++|+++|+||+|+.......+..+.+..+..+ +
T Consensus 75 ~~IlV~Ditd~---~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~-----------~-- 138 (331)
T 3r7w_B 75 ALVYVIDSQDE---YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGE-----------E-- 138 (331)
T ss_dssp EEEEECCCSSC---TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHH-----------T--
T ss_pred EEEEEEECCch---HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHH-----------H--
Confidence 99999999985 4444555544433211112689999999999997653332222222221111 0
Q ss_pred CcccCCCCCCCeeeccC---CceeEEEEeeeccCCchhHHHHHHhhcCC
Q 024385 223 NDFTLGIPGQAFSFSQC---HNKVSVAEASGLTGEISQVEQFIREQVKP 268 (268)
Q Consensus 223 ~~~~~~~~~~~f~f~~~---~~~~~~~~~Sa~~g~i~~l~~~l~~~~~p 268 (268)
|++. ..++.|+++||++.++.+.+..|.+.+.|
T Consensus 139 -------------la~~~~~~~~i~f~eTSAkd~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 139 -------------LLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIP 174 (331)
T ss_dssp -------------TSSSSCSCCCEEEECCCSSSSHHHHHHHHHHTTSST
T ss_pred -------------HHhhcccccCceEEEeccCCCcHHHHHHHHHHHHHh
Confidence 1111 24689999999987699888888877655
No 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=1e-26 Score=185.07 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=119.0
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 140 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 140 (268)
..+..+|+++|++|||||||++++.++.+.....++.. ..+...+..++..+.+.+|||||++++...+..+++.
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-----DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ 101 (204)
Confidence 35778999999999999999999998876443333222 1122334445656788899999999999999999999
Q ss_pred CCEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccc
Q 024385 141 AAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 219 (268)
Q Consensus 141 ~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 219 (268)
+|++++|+|+++. .++.... .|+..+.... .+.|+++|+||+|+.......+..+... .. .+...
T Consensus 102 ~d~iilv~D~~~~-~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~-------~v~~~ 167 (204)
T 3th5_A 102 TDVFLICFSLVSP-ASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKK--LT-------PITYP 167 (204)
Confidence 9999999999997 7788776 5555444321 4899999999999975432211111000 00 00000
Q ss_pred cccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 220 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ..+....+..++++|||++|+ +++++++|.+.+
T Consensus 168 ~~------------~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 168 QG------------LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 00 001221222379999999998 999999988754
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.92 E-value=6e-25 Score=169.07 Aligned_cols=153 Identities=22% Similarity=0.236 Sum_probs=102.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch------hhHhhh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR------PKLDEF 137 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~------~~~~~~ 137 (268)
..+|+++|++|||||||++++.+..+.....++ .+.......+..++ ..+.+|||||+.++. .....|
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~----~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 76 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPG----VTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 76 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC---------CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCC----cceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHH
Confidence 468999999999999999999987653322221 11111111122334 589999999998875 334566
Q ss_pred cc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 138 LP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 138 ~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
++ .+|++++|+|+++. +....|+..+.. .+.|+++|+||+|+..........+.+.+
T Consensus 77 ~~~~~~~~~i~v~D~~~~----~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----------- 135 (165)
T 2wji_A 77 IINEKPDLVVNIVDATAL----ERNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEK----------- 135 (165)
T ss_dssp HHHHCCSEEEEEEETTCH----HHHHHHHHHHHH------TTCCEEEEEECHHHHHHTTCCCCHHHHHH-----------
T ss_pred HhcCCCCEEEEEecCCch----hHhHHHHHHHHh------cCCCEEEEEEchHhccccChhhHHHHHHH-----------
Confidence 64 89999999999874 445556666554 47899999999998542211100111111
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.++
T Consensus 136 ------------------------~~~~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 136 ------------------------ILGVKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp ------------------------HHTSCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred ------------------------HhCCCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 112479999999998 9999999998764
No 104
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.91 E-value=1.5e-25 Score=175.47 Aligned_cols=168 Identities=17% Similarity=0.182 Sum_probs=109.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC--CcccccceeeccccceEEeeccccc---CCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSESTK---KGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
.++|+++|++|||||||++++.+. .+...+ .++.+.......+.. ++..+.+.+|||||++++......++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~----~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 77 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQ----SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM 77 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC---------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCc----ceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHc
Confidence 479999999999999999999985 332212 222322222222221 23447899999999999888888999
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+.++++++|+|++++..++..+..|+..+.... .+.|+++|+||+|+...... ........+.+
T Consensus 78 ~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~--------- 141 (184)
T 2zej_A 78 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA----SSSPVILVGTHLDVSDEKQR---KACMSKITKEL--------- 141 (184)
T ss_dssp HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC----TTCEEEEEEECGGGCCHHHH---HHHHHHHHHHT---------
T ss_pred cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC----CCCcEEEEEECCCcccchhh---HHHHHHHHHHH---------
Confidence 999999999999986336778888888876542 57899999999999653211 11111111111
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC--chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~~ 266 (268)
... . .+.....++++||++|. +++|++.|.+.+
T Consensus 142 ---~~~--~----------~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 142 ---LNK--R----------GFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp ---TTC--T----------TSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred ---HHh--c----------CCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 000 0 01122359999999994 899998887764
No 105
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=1.4e-24 Score=171.24 Aligned_cols=160 Identities=19% Similarity=0.270 Sum_probs=104.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC----------CCCch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG----------HSRLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG----------~~~~~ 131 (268)
...++|+++|++|||||||+++|.++.+......+...+.....+ ..++ .+.+||||| ++.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~----~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY----IIND---ELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE----EETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE----EECC---cEEEEECCCCCccccCHHHHHHHH
Confidence 467899999999999999999999887532222222111111111 1122 689999999 55556
Q ss_pred hhHhhhccCC---CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 132 ~~~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
..+..+++.+ |++++|+|+++. .+.... ++...+.. .+.|+++|+||+|+..........+.+.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~--~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~- 164 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHA-PSNDDV--QMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN- 164 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSC-CCHHHH--HHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCC-CCHHHH--HHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHc-
Confidence 6677777766 999999999987 444432 22223322 67899999999999876554433333332111
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
....++++++||++|+ +++++++|.+.++
T Consensus 165 ------------------------------~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 165 ------------------------------IDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ------------------------------CCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ------------------------------ccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 0234589999999998 9999999988764
No 106
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.91 E-value=8.2e-25 Score=167.00 Aligned_cols=152 Identities=19% Similarity=0.208 Sum_probs=101.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-------chhhHhhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-------LRPKLDEF 137 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-------~~~~~~~~ 137 (268)
++|+++|++|+|||||++++.++.+.. ....+..+..........++ ..+.+|||||+.. +...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 76 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV---VADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRA 76 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC--------------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee---ccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHH
Confidence 589999999999999999999886521 11111111111222233344 4789999999987 34556678
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
++.+|++++|+|+++. +.....++..++.. .+.|+++|+||+|+.... +. +.+
T Consensus 77 ~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~------~~----~~~--------- 129 (161)
T 2dyk_A 77 LEDAEVVLFAVDGRAE---LTQADYEVAEYLRR-----KGKPVILVATKVDDPKHE------LY----LGP--------- 129 (161)
T ss_dssp TTTCSEEEEEEESSSC---CCHHHHHHHHHHHH-----HTCCEEEEEECCCSGGGG------GG----CGG---------
T ss_pred HHhCCEEEEEEECCCc---ccHhHHHHHHHHHh-----cCCCEEEEEECcccccch------Hh----HHH---------
Confidence 9999999999999986 22333455555443 578999999999997531 00 000
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+.. .+..+++++||++|+ +++++++|.+.+|
T Consensus 130 ------------------~~~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 130 ------------------LYG-LGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp ------------------GGG-GSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ------------------HHh-CCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 110 111268999999998 9999999998875
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.91 E-value=1.7e-24 Score=167.78 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=104.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh--------H
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK--------L 134 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--------~ 134 (268)
+..+|+++|++|||||||+++|.+..+.. .+..++++.......+.+++ ..+.+|||||+.++... .
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~ 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI---VTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERA 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC---CCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce---eeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHH
Confidence 56799999999999999999999876421 11112222222223344455 46899999999764322 1
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
..+++.+|++++|+|+++. .++. ...|+..+.... ..++|+++|+||+|+.....
T Consensus 78 ~~~~~~ad~~i~v~D~~~~-~s~~-~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~~-------------------- 132 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTT-DAVD-PAEIWPEFIARL---PAKLPITVVRNKADITGETL-------------------- 132 (172)
T ss_dssp HHHHHTCSEEEEEEETTTC-CCCS-HHHHCHHHHHHS---CTTCCEEEEEECHHHHCCCC--------------------
T ss_pred HHHHHhCCEEEEEEECCCC-CCHH-HHHHHHHHHHhc---ccCCCEEEEEECccCCcchh--------------------
Confidence 2467899999999999987 4554 345665555432 25799999999999843210
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+.. ....++++|||++|+ +++++++|.+.+.
T Consensus 133 --------------------~~~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 133 --------------------GMSE-VNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp --------------------EEEE-ETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred --------------------hhhh-ccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0111 124689999999998 9999999988753
No 108
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=3.4e-24 Score=181.02 Aligned_cols=162 Identities=19% Similarity=0.230 Sum_probs=113.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch----------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR---------- 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~---------- 131 (268)
++...|+++|.+|||||||+|+|++.++. ..+..+++++.......... ....+.+|||||+.++.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~---i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVS---IISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS---CCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCcc---ccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 45678999999999999999999998763 22233333332222222223 12689999999997655
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC-CCCCHHHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV-TAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~l~~~l~~~~ 210 (268)
.....+++.+|++++|+|+++. .+......|+..+.. .+.|+++|+||+|+. ......+..+.+.+.
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~------~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~----- 151 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEG-WRPRDEEIYQNFIKP------LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK----- 151 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHTGG------GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH-----
T ss_pred HHHHHHhhcCCEEEEEEeCCCC-CCchhHHHHHHHHHh------cCCCEEEEEECccCCCCHHHHHHHHHHHHHh-----
Confidence 4566788999999999999987 556665555554443 578999999999997 333332222222211
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+ ....+++++||++|+ +++++++|.++++
T Consensus 152 -------------------------~---~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 152 -------------------------H---PELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp -------------------------C---TTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred -------------------------c---cCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 0 123479999999999 9999999999875
No 109
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.91 E-value=4.1e-24 Score=180.47 Aligned_cols=169 Identities=14% Similarity=0.107 Sum_probs=112.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-----hhhHhhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-----RPKLDEF 137 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-----~~~~~~~ 137 (268)
..+||+++|++|||||||++++.++.... ......++.+..... ..+.+ .+.+.+|||||++++ ...+..+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~-~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAF-DTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHI 77 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTG-GGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc-cccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence 45799999999999999999999873311 111122222222221 22223 378999999999988 6778889
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHH---HHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYL---YDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
++.+|++|+|+|+++. .+++.+..|. ..+... .+++|+++|+||+|+.......+..+....+++.+..
T Consensus 78 ~~~ad~vi~V~D~t~~-~s~~~l~~~~~~l~~l~~~----~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~--- 149 (307)
T 3r7w_A 78 FQMVQVLIHVFDVEST-EVLKDIEIFAKALKQLRKY----SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS--- 149 (307)
T ss_dssp HTTCSEEEEEEETTCS-CHHHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH---
T ss_pred hccCCEEEEEEECCCh-hhHHHHHHHHHHHHHHHHh----CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHH---
Confidence 9999999999999997 7788776554 333332 2689999999999997633333222223333333211
Q ss_pred ccccccccCcccCCCCCCCeeeccCCc--eeEEEEeeeccCCchhHHHHHHhhcC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHN--KVSVAEASGLTGEISQVEQFIREQVK 267 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~--~~~~~~~Sa~~g~i~~l~~~l~~~~~ 267 (268)
..+ +++++++||+++.+.+++..+.+.+-
T Consensus 150 ------------------------~~g~~~~~~~~tSa~~~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 150 ------------------------EFGFPNLIGFPTSIWDESLYKAWSQIVCSLI 180 (307)
T ss_dssp ------------------------TTTCCSCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ------------------------HcCCCCeEEEEeeecCChHHHHHHHHHHHHc
Confidence 111 36899999999667777766665543
No 110
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=3e-24 Score=172.99 Aligned_cols=170 Identities=19% Similarity=0.262 Sum_probs=108.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC----------ch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR----------LR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~----------~~ 131 (268)
...++|+++|.+|+|||||+|+|+++.+.. ..+..+.++......... ......+.+|||||+.. +.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~--~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA--FASKTPGRTQHINYFSVG-PAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSS--CTTCCCCSCCCEEEEEES-CTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcce--eecCCCCcccceEEEEec-CCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 457899999999999999999999886311 111111111111111111 01225899999999643 24
Q ss_pred hhHhhhccC---CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 132 ~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
.....|++. +|++++|+|+++. +......+...+.. .+.|+++|+||+|+..........+.+.+.+..
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRP---LTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSC---CCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCC---CCHHHHHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 455566655 7889999999986 22333333333332 578999999999997654433334444443332
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..... ....++++++||++|. +++++++|.+.++
T Consensus 176 ~~~~~-------------------------~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 176 YRDAG-------------------------YAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHT-------------------------CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred hhhcc-------------------------cCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 21100 0245689999999999 9999999998875
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.91 E-value=2.1e-23 Score=168.85 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=104.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc---------hh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL---------RP 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~---------~~ 132 (268)
.+.++|+++|++|||||||+++|+++.+.... . +..+...........+ ..+.+|||||+.+. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~---~-~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS---Y-SFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC---C------CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC---C-CCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHH
Confidence 45789999999999999999999998763211 1 1111111111122233 68999999999431 12
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHH--HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHH-HHHHHHHHHHHH
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKL 209 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~l~~~l~~~ 209 (268)
.+..++..+|++|+|+|+++. .++. ....++..+... ..+.|+++|+||+|+........ ..+.+....+.
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~l~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~- 174 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQ-CGLTIKEQINLFYSIKSV----FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN- 174 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCT-TSSCHHHHHHHHHHHHTC----C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH-
T ss_pred HHHHhhccccEEEEEEecccc-cCcchHHHHHHHHHHHHh----hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh-
Confidence 234567889999999999987 4443 334555555442 14899999999999976443221 11122211110
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++|||++|+ +++++++|.+.+
T Consensus 175 -----------------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 175 -----------------------------VKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp -----------------------------CCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------------------cCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 0112689999999998 999999998764
No 112
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=8.9e-24 Score=177.64 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=108.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc--------hhhH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL--------RPKL 134 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~--------~~~~ 134 (268)
+..+|+++|.+|||||||+|+|++.++. ..+..+++++..........+ ..+.+|||||+.+. ....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~---ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~ 80 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA---PISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEV 80 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS---CCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCcee---eecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHH
Confidence 3457999999999999999999998763 222233333222222222233 68999999998873 4456
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
..+++.+|++++|+|++++ . .....|+...+.... .+.|+++|+||+|+..... .+ ...++.+
T Consensus 81 ~~~l~~ad~il~VvD~~~~-~--~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~~~--~~----~~~~~~~----- 143 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHP-P--TPEDELVARALKPLV---GKVPILLVGNKLDAAKYPE--EA----MKAYHEL----- 143 (301)
T ss_dssp HHHTSSCSEEEEEEETTSC-C--CHHHHHHHHHHGGGT---TTSCEEEEEECGGGCSSHH--HH----HHHHHHT-----
T ss_pred HHHHhcCCEEEEEEECCCC-C--ChHHHHHHHHHHhhc---CCCCEEEEEECcccCCchH--HH----HHHHHHh-----
Confidence 6788999999999999986 2 233456655554321 4799999999999975321 11 1112211
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
....+++++||++|. +++++++|.+.++
T Consensus 144 -------------------------~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 144 -------------------------LPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp -------------------------STTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred -------------------------cCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 111368999999998 9999999998764
No 113
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.91 E-value=9e-24 Score=166.24 Aligned_cols=159 Identities=19% Similarity=0.259 Sum_probs=105.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC----------CCCch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG----------HSRLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG----------~~~~~ 131 (268)
...++|+++|++|||||||++++.++.+.. ...+...+....... . + ..+.+||||| ++.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~----~-~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYL----V-N--SKYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEE----E-T--TTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEE----E-C--CcEEEEECCCCccccCChhhHHHHH
Confidence 456899999999999999999999887422 111111111111111 1 1 3688999999 44455
Q ss_pred hhHhhhccCC---CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 132 ~~~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
..+..+++.+ |++++|+|+++. .+.. ...+...+.. .+.|+++|+||+|+..........+.+.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~--~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIP-PQDS--DLMMVEWMKS-----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSC-CCHH--HHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcCceEEEEEecCCCC-CCHH--HHHHHHHHHH-----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence 6666676655 999999999876 2222 2222223322 478999999999998665554444444332221
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
...+++++|||++|+ ++++++||.+.++
T Consensus 165 -------------------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 165 -------------------------------YGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp -------------------------------SCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred -------------------------------cCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 234589999999999 9999999998764
No 114
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.90 E-value=1.5e-23 Score=178.72 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=118.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
....+|+++|.+|+|||||++++.++.+.....++. + ..+...+..++..+.+.+|||||++++...+..+++.+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~----~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 227 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV----F-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCS----E-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcc----c-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCC
Confidence 567899999999999999999999887744333322 2 22233345567667888999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccccc
Q 024385 142 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 220 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 220 (268)
|++++|+|+++. .++..+. .|+..+.... .++|+++|+||+|+.......+ .+.. . ....+...+
T Consensus 228 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~---~~~~----~--~~~~v~~~~ 293 (332)
T 2wkq_A 228 DVFLICFSLVSP-ASFHHVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIE---KLKE----K--KLTPITYPQ 293 (332)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTSCEEEEEECHHHHTCHHHHH---HHHH----T--TCCCCCHHH
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhhC----CCCcEEEEEEchhcccccchhh---hccc----c--ccccccHHH
Confidence 999999999997 6777776 4555554432 4899999999999965321111 0000 0 000000000
Q ss_pred ccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 221 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.. .|....+..++++|||++|+ +++++++|.+.+
T Consensus 294 ~~------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 294 GL------------AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HH------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH------------HHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 00 01111122379999999998 999999998754
No 115
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=4.9e-23 Score=182.75 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=93.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhH-------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKL------- 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------- 134 (268)
+...+|+++|.+|||||||+|+|++... ...+..++++.......+..+| +.+.+|||||+.++...+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~---a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~ 305 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQER---AIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRR 305 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC---------------------CEEEEETT--EEEEEEC------------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---cccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHH
Confidence 4578899999999999999999998753 2222333334344334445556 689999999998766443
Q ss_pred -hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 135 -DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 135 -~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
..+++.+|++++|+|++++ .++..... ...++... .+.|+++|+||+|+......+. +.+.+ .
T Consensus 306 ~~~~~~~aD~vl~VvD~s~~-~s~~~~~~-~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~--~~l~~----~---- 369 (476)
T 3gee_A 306 SRMKMAEADLILYLLDLGTE-RLDDELTE-IRELKAAH----PAAKFLTVANKLDRAANADALI--RAIAD----G---- 369 (476)
T ss_dssp --CCCSSCSEEEEEEETTTC-SSGGGHHH-HHHHHHHC----TTSEEEEEEECTTSCTTTHHHH--HHHHH----H----
T ss_pred HHhhcccCCEEEEEEECCCC-cchhhhHH-HHHHHHhc----CCCCEEEEEECcCCCCccchhH--HHHHh----c----
Confidence 3478899999999999997 55543222 22223221 3789999999999976543321 11111 0
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+++++||++|+ +++|+++|.+.+
T Consensus 370 ---------------------------~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 370 ---------------------------TGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp ---------------------------HTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred ---------------------------CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 01368999999999 999999998875
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=1.2e-23 Score=164.75 Aligned_cols=154 Identities=23% Similarity=0.228 Sum_probs=106.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch------hhHhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR------PKLDE 136 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~------~~~~~ 136 (268)
+.++|+++|++|||||||+++|.+..+.. +..++.+.......+..++ ..+.+|||||+.++. .....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~----~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~ 79 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYI----GNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARD 79 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEE----EECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc----cCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHH
Confidence 45799999999999999999999876522 2223333222233333444 689999999999875 34556
Q ss_pred hcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 137 FLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 137 ~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
+++ .+|++++|+|+++ ++....|+..+.. .+.|+++|+||+|+..........+.+.+
T Consensus 80 ~~~~~~~~~~i~v~d~~~----~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~---------- 139 (188)
T 2wjg_A 80 YIINEKPDLVVNIVDATA----LERNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEK---------- 139 (188)
T ss_dssp HHHHHCCSEEEEEEEGGG----HHHHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCCCHHHHHH----------
T ss_pred HHhccCCCEEEEEecchh----HHHHHHHHHHHHh------cCCCEEEEEEhhhccccccchHHHHHHHH----------
Confidence 664 5999999999886 4566677766654 57899999999998543211111111111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|+ +++++++|.+.+.
T Consensus 140 -------------------------~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 140 -------------------------ILGVKVVPLSAAKKMGIEELKKAISIAVK 168 (188)
T ss_dssp -------------------------HHTSCEEECBGGGTBSHHHHHHHHHHHHT
T ss_pred -------------------------HhCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 112479999999997 9999999987653
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.89 E-value=1.7e-23 Score=172.04 Aligned_cols=150 Identities=19% Similarity=0.168 Sum_probs=104.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh----------hH
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP----------KL 134 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~----------~~ 134 (268)
++|+++|.+|||||||+|+|++..+.. +..|+++.......+...+ ..+.+|||||+..+.. ..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v----~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~ 75 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRV----GNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIA 75 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEE----EECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCc----cCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHH
Confidence 589999999999999999999886522 2223333333333344445 4899999999988764 35
Q ss_pred hhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 135 DEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 135 ~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
..|+ +.+|++|+|+|+++. +....+...+.. .+.|+++|+||+|+..........+.+.+
T Consensus 76 ~~~~~~~~~d~vi~VvDas~~----~~~~~l~~~l~~------~~~pvilv~NK~Dl~~~~~~~~~~~~l~~-------- 137 (256)
T 3iby_A 76 AQSVIDLEYDCIINVIDACHL----ERHLYLTSQLFE------LGKPVVVALNMMDIAEHRGISIDTEKLES-------- 137 (256)
T ss_dssp HHHHHHSCCSEEEEEEEGGGH----HHHHHHHHHHTT------SCSCEEEEEECHHHHHHTTCEECHHHHHH--------
T ss_pred HHHHhhCCCCEEEEEeeCCCc----hhHHHHHHHHHH------cCCCEEEEEEChhcCCcCCcHHHHHHHHH--------
Confidence 5677 899999999999984 333333333332 58899999999998654322111122221
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
..+++++++||++|. +++++++|.+.
T Consensus 138 ---------------------------~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 138 ---------------------------LLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ---------------------------HHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ---------------------------HcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 113579999999999 99999999874
No 118
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.89 E-value=9.5e-23 Score=161.50 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=116.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++|+++|++|||||||++++.+..+...+. ++.+.......+.++|..+.+.+|||||++.++.....+++.+++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~----~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 80 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK----STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG 80 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence 4789999999999999999999987643322 222222233345567776789999999999988888889999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+.... ..++.... . .
T Consensus 81 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l-~---~-------------- 138 (199)
T 2f9l_A 81 ALLVYDIAKH-LTYENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTDEARAF-A---E-------------- 138 (199)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHH-H---H--------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECcccccccCcCHHHHHHH-H---H--------------
Confidence 9999999986 56777777776665432 2578999999999997533 22222111 1 1
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||+++. +++++++|.+.+
T Consensus 139 ------------------~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 139 ------------------KNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp ------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123578999999998 999999988754
No 119
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=173.25 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=108.7
Q ss_pred cCCCeEEEEcCC---------CCcHHHHHHHHHcC---CcccccceeeccccceEEeeccc--------------ccCCc
Q 024385 62 KKSTTIVLAGLS---------GSGKTVLFYQLRDG---STHQGTVTSMEPNEDTFVLHSES--------------TKKGK 115 (268)
Q Consensus 62 ~~~~~i~ivG~~---------~~GKSsLi~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 115 (268)
...+||+++|.+ |||||||+++|+++ .+...+.++.. +.......+ ..++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLS---TSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEEC---HHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccc---ccccceeEeecccccccccccccccCCc
Confidence 456899999999 99999999999984 44332222210 100011111 13456
Q ss_pred eeeEEEEe-----------------------CCCCCCchhhHhhhcc---------------------CCCEEEEEEeCC
Q 024385 116 IKPVHLVD-----------------------VPGHSRLRPKLDEFLP---------------------QAAGIVFVVDAL 151 (268)
Q Consensus 116 ~~~~~i~D-----------------------tpG~~~~~~~~~~~~~---------------------~~d~ii~v~d~~ 151 (268)
.+.+.+|| ++|++++...+..+++ ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 68899999 6677777667777776 799999999999
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCC
Q 024385 152 EF-LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIP 230 (268)
Q Consensus 152 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 230 (268)
+. ..+++.+..|+..+..... ..++|+++|+||+|+..... + + +.+.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~--~~~~piilV~NK~Dl~~~~~---v-~----~~~~~--------------------- 222 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLA--KTKKPIVVVLTKCDEGVERY---I-R----DAHTF--------------------- 222 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHH--HTTCCEEEEEECGGGBCHHH---H-H----HHHHH---------------------
T ss_pred CCchhhHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccccccHH---H-H----HHHHH---------------------
Confidence 84 1479999999888875411 15799999999999964321 1 1 11111
Q ss_pred CCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 231 GQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 231 ~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....++++++|||++|. +++++++|.+.+
T Consensus 223 ------~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 223 ------ALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ------HHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------HHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 000124579999999998 999999998764
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=1.6e-23 Score=174.03 Aligned_cols=154 Identities=22% Similarity=0.220 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh----------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP---------- 132 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---------- 132 (268)
+.++|+++|.+|||||||+|+|++..+.. +..++++.......+...+ ..+.+|||||+.++..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v----~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~ 75 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV----GNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQ 75 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEE----EECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCccc----CCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHH
Confidence 46799999999999999999999987522 2233333333333344444 4789999999988762
Q ss_pred hHhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 133 KLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 133 ~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
....|+ +.+|++|+|+|+++. +....+...+.. .++|+++|+||+|+..........+.+.+
T Consensus 76 i~~~~~~~~~~d~ii~VvD~~~~----~~~~~~~~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~------ 139 (274)
T 3i8s_A 76 IACHYILSGDADLLINVVDASNL----ERNLYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIEIDALSA------ 139 (274)
T ss_dssp HHHHHHHHTCCSEEEEEEEGGGH----HHHHHHHHHHHH------HTCCEEEEEECHHHHHHTTEEECHHHHHH------
T ss_pred HHHHHHhhcCCCEEEEEecCCCh----HHHHHHHHHHHh------cCCCEEEEEECccchhhhhHHHHHHHHHH------
Confidence 123343 789999999999984 344444444443 47899999999998643321111122221
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+++++++||++|. +++++++|.+.++
T Consensus 140 -----------------------------~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 140 -----------------------------RLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp -----------------------------HHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred -----------------------------hcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 112479999999999 9999999988764
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.89 E-value=3.1e-23 Score=170.81 Aligned_cols=153 Identities=24% Similarity=0.325 Sum_probs=105.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------Hhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------LDE 136 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------~~~ 136 (268)
+.++|+++|++|||||||+|+|++..+..+. .|+.+.......+...+ ..+.+|||||+..+... ...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~----~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~ 77 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVAN----WPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARD 77 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEE----CTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccC----CCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHH
Confidence 4578999999999999999999998763222 22222222222222333 68999999999887652 345
Q ss_pred hc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 137 FL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 137 ~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
|+ ..+|++++|+|+++. +....++..+.. .+.|+++|+||+|+..........+.+.+
T Consensus 78 ~~~~~~~d~ii~V~D~t~~----~~~~~~~~~l~~------~~~pvilv~NK~Dl~~~~~i~~~~~~l~~---------- 137 (258)
T 3a1s_A 78 YLLKGDADLVILVADSVNP----EQSLYLLLEILE------MEKKVILAMTAIDEAKKTGMKIDRYELQK---------- 137 (258)
T ss_dssp HHHHSCCSEEEEEEETTSC----HHHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCBCHHHHHH----------
T ss_pred HHhhcCCCEEEEEeCCCch----hhHHHHHHHHHh------cCCCEEEEEECcCCCCccchHHHHHHHHH----------
Confidence 55 589999999999986 334455555554 57999999999998543221111111111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. +++++++|.+.+
T Consensus 138 -------------------------~lg~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 138 -------------------------HLGIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp -------------------------HHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------------HcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 113579999999998 999999998754
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.88 E-value=3.9e-23 Score=171.24 Aligned_cols=152 Identities=24% Similarity=0.276 Sum_probs=103.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch------hhHhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR------PKLDE 136 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~------~~~~~ 136 (268)
..++|+++|++|||||||+|+|++........+ +++.......+.. ...+.+|||||+..+. .....
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p----g~tv~~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~e~v~~~ 74 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP----GVTVERKSGLVKK---NKDLEIQDLPGIYSMSPYSPEAKVARD 74 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS----CCCCSCEEEECTT---CTTEEEEECCCCSCSSCSSHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC----CCcEEEEEEEEec---CCeEEEEECCCcCccCCCChHHHHHHH
Confidence 356899999999999999999998764322222 2111111111222 3689999999998876 34556
Q ss_pred hcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 137 FLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 137 ~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
|+. .+|++++|+|+++. +....|...+.. .+.|+++|+||+|+..........+.+.+
T Consensus 75 ~~~~~~~d~vi~V~D~t~~----e~~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---------- 134 (272)
T 3b1v_A 75 YLLSQRADSILNVVDATNL----ERNLYLTTQLIE------TGIPVTIALNMIDVLDGQGKKINVDKLSY---------- 134 (272)
T ss_dssp HHHTTCCSEEEEEEEGGGH----HHHHHHHHHHHH------TCSCEEEEEECHHHHHHTTCCCCHHHHHH----------
T ss_pred HHhcCCCCEEEEEecCCch----HhHHHHHHHHHh------cCCCEEEEEEChhhCCcCCcHHHHHHHHH----------
Confidence 665 69999999999884 444555555554 58899999999998543211111111221
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 135 -------------------------~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 135 -------------------------HLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp -------------------------HHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred -------------------------HcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998865
No 123
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=5.8e-22 Score=176.05 Aligned_cols=153 Identities=22% Similarity=0.301 Sum_probs=105.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC-Cchh--------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS-RLRP-------- 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-~~~~-------- 132 (268)
+...+|+++|.+|||||||+|+|++..+. ..+..+.++.......+.++| ..+.+|||||+. ++..
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a---~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~ 315 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRA---IVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIE 315 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBC---CCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCC---ccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHH
Confidence 34689999999999999999999987641 122223333333333344455 579999999998 6542
Q ss_pred hHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
....+++.+|++|+|+|++++ .+.... +.+ +.+ .+.|+++|+||+|+......+++.+ .
T Consensus 316 ~~~~~~~~aD~vl~VvD~s~~-~s~~~~-~il-~~l-------~~~piivV~NK~DL~~~~~~~~~~~--------~--- 374 (482)
T 1xzp_A 316 RTLQEIEKADIVLFVLDASSP-LDEEDR-KIL-ERI-------KNKRYLVVINKVDVVEKINEEEIKN--------K--- 374 (482)
T ss_dssp HHHHHHHHCSEEEEEEETTSC-CCHHHH-HHH-HHH-------TTSSEEEEEEECSSCCCCCHHHHHH--------H---
T ss_pred HHHHHhhcccEEEEEecCCCC-CCHHHH-HHH-HHh-------cCCCEEEEEECcccccccCHHHHHH--------H---
Confidence 245688999999999999987 455432 222 222 4789999999999975433222211 0
Q ss_pred hhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 213 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ ...++++++||++|+ +++|+++|.+.+
T Consensus 375 -----------------------~---~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 375 -----------------------L---GTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp -----------------------H---TCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred -----------------------h---cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 112368999999999 999999998753
No 124
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.88 E-value=3.4e-22 Score=174.88 Aligned_cols=173 Identities=19% Similarity=0.183 Sum_probs=114.6
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCCcccc---cceeecc-----ccceEEeec---cccc---CCceeeEEEEeCCC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG---TVTSMEP-----NEDTFVLHS---ESTK---KGKIKPVHLVDVPG 126 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~---~~~~~~~-----~~~~~~~~~---~~~~---~~~~~~~~i~DtpG 126 (268)
..+.++|+++|++|+|||||+++|++...... ...+... ....+.... .... ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 35678999999999999999999998543210 0001000 000000000 0001 11125899999999
Q ss_pred CCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 024385 127 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 206 (268)
Q Consensus 127 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l 206 (268)
|++|...+..++..+|++|+|+|++++ .++.+..+++..+... ...|+++|+||+|+.......+..+.+.+.+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~-~~~~qt~~~~~~~~~~-----~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 158 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEP-FPQPQTREHFVALGII-----GVKNLIIVQNKVDVVSKEEALSQYRQIKQFT 158 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSC-SSCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCC-CCcHHHHHHHHHHHHc-----CCCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 4567777777655432 3458999999999975432222222222111
Q ss_pred HHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 207 DKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
.. .....++++++||++|+ +++|+++|.+.+++
T Consensus 159 ~~-----------------------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 159 KG-----------------------------TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TT-----------------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred Hh-----------------------------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 10 00234689999999999 99999999987653
No 125
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.88 E-value=4.3e-22 Score=156.81 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=117.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCE
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 143 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ 143 (268)
.++++++|++|||||||++++.+..+...+. ++.+.......+.++|..+.+.+|||+|++++...+..+++.+++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~----~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK----STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCC----CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC----CccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 4789999999999999999999987643332 233333333445567766788899999999999888999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 144 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 144 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
+++|+|..+. .+++.+..|+..+.... ..+.|+++++||+|+.... ..++... +..
T Consensus 105 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l~~----------------- 162 (191)
T 1oix_A 105 ALLVYDIAKH-LTYENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTDEARA-FAE----------------- 162 (191)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHH-HHH-----------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHH-HHH-----------------
Confidence 9999999986 56666777776654432 2578999999999997533 2222111 111
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..++.++++||+++. +++++++|.+.+
T Consensus 163 ------------------~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 163 ------------------KNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 123578999999998 999999998764
No 126
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9e-23 Score=160.57 Aligned_cols=140 Identities=35% Similarity=0.527 Sum_probs=105.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccC-
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQ- 140 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~- 140 (268)
...++|+++|++|||||||++++.+..+.. ...+..++.+.. . ..+.+.+|||||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-~~~~~~~~~~~~-------~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAAD-------Y--DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------C-------C--CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc-ccccCCCceeee-------e--cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 567899999999999999999999987643 222333332211 1 22578999999999988888877765
Q ss_pred ---CCEEEEEEeCC-CCCCCHHHHHHHHHHHHhcCCc-cCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 024385 141 ---AAGIVFVVDAL-EFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 212 (268)
Q Consensus 141 ---~d~ii~v~d~~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 212 (268)
+|++|+|+|++ +. .++.....|+..++..... ...+.|+++|+||+|+......+++.+.+.++++.++.+
T Consensus 116 ~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~l~~~ 191 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDP-KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 191 (193)
T ss_dssp GGGEEEEEEEEETTCCH-HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCCEEEEEEECCCCc-hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHHHhhc
Confidence 89999999999 65 6788888888888764221 125899999999999999889999999999888887654
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=1.2e-22 Score=179.59 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=105.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC----------Cchh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS----------RLRP 132 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~----------~~~~ 132 (268)
...+|+++|.+|||||||+|++++..+. ..+..++++.......+..++ ..+.+|||||+. .|..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~---~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~ 248 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV---IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSV 248 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE---EEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce---eecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHH
Confidence 4579999999999999999999988652 122223333333333344455 468999999983 3333
Q ss_pred hH-hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH--HHHHHHHHHHHHHH
Q 024385 133 KL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKL 209 (268)
Q Consensus 133 ~~-~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~l~~~l~~~ 209 (268)
.. ..+++.+|++++|+|++++ .+.+.. .|+..+.. .++|+++|+||+|+...... ++..+.+.+.+.
T Consensus 249 ~~~~~~~~~ad~~llv~D~~~~-~s~~~~-~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~-- 318 (436)
T 2hjg_A 249 LRALKAIDRSEVVAVVLDGEEG-IIEQDK-RIAGYAHE------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ-- 318 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTC-CCHHHH-HHHHHHHH------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG--
T ss_pred HHHHHHHHhCCEEEEEEcCCcC-CcHHHH-HHHHHHHH------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc--
Confidence 32 2578899999999999997 555443 45554443 68999999999999865432 233333322111
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
. ...++++++||++|+ ++++++++.+.
T Consensus 319 ----------------------------~-~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 319 ----------------------------F-LDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp ----------------------------G-GTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred ----------------------------c-CCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 1 123579999999999 99998887654
No 128
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.88 E-value=3.4e-23 Score=162.36 Aligned_cols=159 Identities=20% Similarity=0.315 Sum_probs=96.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC-----------CCCchhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG-----------HSRLRPK 133 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG-----------~~~~~~~ 133 (268)
++|+++|++|||||||++++.++.+.....++...... ... .. .+.+||||| ++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~----~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 71 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIE----WK----NHKIIDMPGFGFMMGLPKEVQERIKDE 71 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEE----ET----TEEEEECCCBSCCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEe----cC----CEEEEECCCccccccCCHHHHHHHHHH
Confidence 58999999999999999999998875433332211111 111 11 579999999 4455566
Q ss_pred HhhhccC-CCEEEEEEeCCCCCCCHHHH-HHHHHH--------HHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 134 LDEFLPQ-AAGIVFVVDALEFLPNCSAA-SEYLYD--------ILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 134 ~~~~~~~-~d~ii~v~d~~~~~~~~~~~-~~~l~~--------~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
+..+++. ++++++|+++.+. .++... ..|... +.... ...+.|+++|+||+|+.... .+..+.+.
T Consensus 72 ~~~~~~~~~~~~~~v~~v~d~-~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~--~~~~~~~~ 146 (190)
T 2cxx_A 72 IVHFIEDNAKNIDVAVLVVDG-KAAPEIIKRWEKRGEIPIDVEFYQFL--RELDIPTIVAVNKLDKIKNV--QEVINFLA 146 (190)
T ss_dssp HHHHHHHHGGGCCEEEEEEET-THHHHHHHHHHHTTCCCHHHHHHHHH--HHTTCCEEEEEECGGGCSCH--HHHHHHHH
T ss_pred HHHHHHhhhccCCEEEEEEcc-hhhhhHHHhhhccCccHHHHHHHHHH--HhcCCceEEEeehHhccCcH--HHHHHHHH
Confidence 6667665 5544444444444 345554 333321 11111 12689999999999997653 22222222
Q ss_pred HHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 204 KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.++ . .|. ....++++|||++|+ +++++++|.+.+
T Consensus 147 ~~~~---~-----------------------~~~--~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 147 EKFE---V-----------------------PLS--EIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHT---C-----------------------CGG--GHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhh---h-----------------------hhh--ccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 1111 0 010 013468999999998 999999998764
No 129
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.87 E-value=2.7e-22 Score=181.61 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=105.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEe----ecccccCCceeeEEEEeCCCCCCchhhHhhh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVL----HSESTKKGKIKPVHLVDVPGHSRLRPKLDEF 137 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 137 (268)
....||+++|.+|||||||+++++++.+.....++.......... .......+..+.+.+|||||++.+......+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 456899999999999999999999988754333333222111110 1111222334789999999999999999999
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccc
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 217 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 217 (268)
++.+|++|+|+|+++. +....|+..+.... .+.|+++|+||+|+........ +.+.+ .
T Consensus 119 l~~~d~ii~V~D~s~~----~~~~~~~~~l~~~~----~~~pvilV~NK~Dl~~~~~v~~--~~~~~----~-------- 176 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD----SNKHYWLRHIEKYG----GKSPVIVVMNKIDENPSYNIEQ--KKINE----R-------- 176 (535)
T ss_dssp HHSSEEEEEEECGGGG----GGHHHHHHHHHHHS----SSCCEEEEECCTTTCTTCCCCH--HHHHH----H--------
T ss_pred ccCCcEEEEEEeCCCc----hhHHHHHHHHHHhC----CCCCEEEEEECCCcccccccCH--HHHHH----H--------
Confidence 9999999999999875 44566666666542 5799999999999976443211 11111 0
Q ss_pred cccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 218 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 218 ~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+. ..+++++++||++|+ +++++++|.+.+
T Consensus 177 ------------------~~--~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 177 ------------------FP--AIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp ------------------CG--GGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred ------------------HH--hcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 00 112369999999999 999999998765
No 130
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.87 E-value=2.7e-22 Score=166.56 Aligned_cols=154 Identities=22% Similarity=0.245 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchh------hHhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP------KLDE 136 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~------~~~~ 136 (268)
+.++|+++|++|||||||+|+|++..+..+ ..++.+...........+ ..+.+|||||+.++.. ....
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~----~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 75 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVG----NWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARN 75 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEE----ECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccC----CCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHH
Confidence 457999999999999999999998875322 223333333333334445 4799999999988766 4556
Q ss_pred hc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 137 FL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 137 ~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
|+ ..+|++++|+|+++. .....++..+... ...|+++|+||+|+..........+.+.+
T Consensus 76 ~~~~~~~d~vi~v~D~~~~----~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---------- 136 (271)
T 3k53_A 76 FILDGNADVIVDIVDSTCL----MRNLFLTLELFEM-----EVKNIILVLNKFDLLKKKGAKIDIKKMRK---------- 136 (271)
T ss_dssp HHHTTCCSEEEEEEEGGGH----HHHHHHHHHHHHT-----TCCSEEEEEECHHHHHHHTCCCCHHHHHH----------
T ss_pred hhhccCCcEEEEEecCCcc----hhhHHHHHHHHhc-----CCCCEEEEEEChhcCcccccHHHHHHHHH----------
Confidence 66 689999999999985 4455555555542 23999999999997542211111111221
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|. ++++++++.+.+
T Consensus 137 -------------------------~lg~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 137 -------------------------ELGVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp -------------------------HHSSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred -------------------------HcCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 112479999999998 999999998753
No 131
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=1.8e-21 Score=171.77 Aligned_cols=166 Identities=19% Similarity=0.191 Sum_probs=102.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--cccc-------------------------ceeeccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGT-------------------------VTSMEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~ 114 (268)
+...+|+++|++|+|||||+++|++..- .... .....++.+.......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 4568999999999999999999965421 0000 000011122222122223333
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHhcCCccCCCCc-EEEEeecCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP--NC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTD 188 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~---~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~D 188 (268)
..+.+||||||++|...+..+++.+|++|+|+|++++.. .+ .+..+.+..+.. .++| +++|+||+|
T Consensus 95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~------~~v~~iIvviNK~D 166 (439)
T 3j2k_7 95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT------AGVKHLIVLINKMD 166 (439)
T ss_pred --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH------cCCCeEEEEeecCC
Confidence 689999999999999999999999999999999998621 11 133333333332 4666 999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chh
Q 024385 189 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ 257 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~ 257 (268)
+......++..+.+.+++..+..... |.. ..+++++++||++|+ +++
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g---------------------~~~-~~~~~~i~iSA~~G~ni~~ 214 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVG---------------------FNP-KKDIHFMPCSGLTGANLKE 214 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhc---------------------ccc-cCCeeEEEeeccCCccccc
Confidence 96543222223333333333211100 100 125789999999998 877
No 132
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=6.1e-22 Score=175.12 Aligned_cols=152 Identities=18% Similarity=0.259 Sum_probs=96.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHh------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLD------ 135 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~------ 135 (268)
+...+|+++|++|+|||||+|+|++..+. ..+..++++.......+.++| ..+.+|||||+.++.....
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a---~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~ 296 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRA---IVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVER 296 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBS---CCSCCTTCCHHHHHHEEEETT--EEEEECC------------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcc---cccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHH
Confidence 45788999999999999999999986541 122223333333333344455 6789999999876554433
Q ss_pred --hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 136 --EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 136 --~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
.+++.+|++++|+|++++ .+... ..++..+ .+.|+++|+||+|+.......
T Consensus 297 ~~~~~~~aD~vl~VvD~s~~-~~~~~-~~i~~~l--------~~~piivV~NK~Dl~~~~~~~----------------- 349 (462)
T 3geh_A 297 SRQAANTADLVLLTIDAATG-WTTGD-QEIYEQV--------KHRPLILVMNKIDLVEKQLIT----------------- 349 (462)
T ss_dssp --CCCCSCSEEEEEEETTTC-SCHHH-HHHHHHH--------TTSCEEEEEECTTSSCGGGST-----------------
T ss_pred HhhhhhcCCEEEEEeccCCC-CCHHH-HHHHHhc--------cCCcEEEEEECCCCCcchhhH-----------------
Confidence 367889999999999986 33322 3333332 347999999999997542110
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ...+....+++++||++|+ +++|+++|.+.+
T Consensus 350 ------~---------------~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 350 ------S---------------LEYPENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp ------T---------------CCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ------H---------------HHHhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 1111234579999999999 999999998865
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=2.1e-22 Score=178.03 Aligned_cols=154 Identities=18% Similarity=0.230 Sum_probs=98.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc---------hhhHh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL---------RPKLD 135 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~---------~~~~~ 135 (268)
++|+++|.+|||||||+|+|+++.. ...+..|++++........++| ..+.+|||||++.. +....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~---~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 76 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK---AIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTL 76 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---ceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHH
Confidence 5899999999999999999998764 2223334444444444455566 47899999998752 34567
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
.+++.+|++++|+|++++ - .....++..+++. .++|+++|+||+|+... ...... ..+
T Consensus 77 ~~~~~ad~il~V~D~~~~-~--~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~~~-----~~~~~~---~~~------ 134 (439)
T 1mky_A 77 NMIREADLVLFVVDGKRG-I--TKEDESLADFLRK-----STVDTILVANKAENLRE-----FEREVK---PEL------ 134 (439)
T ss_dssp HHHTTCSEEEEEEETTTC-C--CHHHHHHHHHHHH-----HTCCEEEEEESCCSHHH-----HHHHTH---HHH------
T ss_pred HHHHhCCEEEEEEECCCC-C--CHHHHHHHHHHHH-----cCCCEEEEEeCCCCccc-----cHHHHH---HHH------
Confidence 789999999999999886 2 2233445555443 47899999999998421 001110 111
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+. ..+++++||++|. +++|+++|.+.++
T Consensus 135 ---------------------~~lg-~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 135 ---------------------YSLG-FGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp ---------------------GGGS-SCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---------------------HhcC-CCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 0000 1147899999999 9999999987653
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=2.5e-22 Score=178.46 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=105.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC----------CCCchh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG----------HSRLRP 132 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG----------~~~~~~ 132 (268)
...+|+++|.+|+|||||+|++++... ...+..++++.......+..++ ..+.+||||| ++.+..
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~---~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~ 268 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEER---VIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSV 268 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT---EEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCc---cccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHH
Confidence 467999999999999999999997653 1112222222222222333445 4789999999 555555
Q ss_pred hHh-hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHH
Q 024385 133 KLD-EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKL 209 (268)
Q Consensus 133 ~~~-~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~ 209 (268)
... .+++.+|++|+|+|++++ +.....++...+.. .++|+++|+||+|+..... .++..+.+.+.+.
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~---~~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-- 338 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEG---IIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ-- 338 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTC---CCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCG--
T ss_pred HHHHHHHhhCCEEEEEEeCCCC---cCHHHHHHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcc--
Confidence 443 478899999999999986 22333344444332 6799999999999986443 2333333332111
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ...++++++||++|+ ++++++++.+.+
T Consensus 339 ----------------------------~-~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 339 ----------------------------F-LDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp ----------------------------G-GTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred ----------------------------c-CCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 1 123579999999999 999999987653
No 135
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.86 E-value=2.2e-21 Score=176.28 Aligned_cols=187 Identities=16% Similarity=0.229 Sum_probs=114.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeeccc------------ccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES------------TKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~DtpG~~~ 129 (268)
.+.++|+++|++|+|||||+++|++..+.......++++.+........ ........+++||||||++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4678999999999999999999987644221111222223322222110 0001112589999999999
Q ss_pred chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--------------H
Q 024385 130 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------K 195 (268)
Q Consensus 130 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~ 195 (268)
|...+..+++.+|++|+|+|++++. ..+....+..+.. .++|+++|+||+|+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv--~~qT~e~l~~l~~------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGF--KPQTQEALNILRM------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCC--CHHHHHHHHHHHH------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCc--cHhHHHHHHHHHH------cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 9999999999999999999999962 1223333333332 6889999999999975321 1
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 196 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 196 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+.+.+.+...+..+...-.... ....... ........++++++||++|. +++|+++|...+
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~g---l~~e~~~-------~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEG---FESERFD-------RVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---CEEEEGG-------GCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC---cchHHHH-------HHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 3333444333332221111100 0000000 01112456799999999999 999999998754
No 136
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=8.9e-22 Score=163.65 Aligned_cols=166 Identities=17% Similarity=0.238 Sum_probs=93.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccce----eeccccceEEeecccccCCceeeEEEEeCCCCCC-------c
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-------L 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-------~ 130 (268)
...++|+++|.+|+|||||+|+|++........+ ...++.+.......+..+|..+.+.+|||||+.+ +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 4568999999999999999999887654221110 0123333333334445566557899999999843 2
Q ss_pred hhhH-------hhhccC-------------CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 131 RPKL-------DEFLPQ-------------AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 131 ~~~~-------~~~~~~-------------~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.... ..|++. +|+++++++.+.. .+......+...+. .++|+++|+||+|+.
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~--~~~~~d~~~l~~l~------~~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH--GLKPLDIEFMKRLH------EKVNIIPLIAKADTL 157 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS--SCCHHHHHHHHHHT------TTSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC--CCCHHHHHHHHHHh------ccCCEEEEEeccCCC
Confidence 3322 344432 7899999988763 23334344434333 378999999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.........+.+.+.+. ..+++++++||++|+ ++++.++|.+.+|
T Consensus 158 ~~~e~~~~~~~i~~~l~--------------------------------~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQ--------------------------------EHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp CHHHHHHHHHHHHHHHH--------------------------------HTTCCCCCC-----------CHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHHH--------------------------------HcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 54333333333333332 123467888999998 9999999988765
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=6.8e-22 Score=174.65 Aligned_cols=153 Identities=21% Similarity=0.288 Sum_probs=99.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC--------CchhhHh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS--------RLRPKLD 135 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--------~~~~~~~ 135 (268)
.++|+++|.+|||||||+|+|++..+. .....+++++........+.+ ..+.+|||||++ .++....
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~---~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~ 77 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS---IVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAE 77 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC--------------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce---eecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHH
Confidence 368999999999999999999987652 222333444344444455555 579999999986 4566677
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 215 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 215 (268)
.+++.+|++|+|+|+.++ .+ ....++..++.. .++|+++|+||+|+.....
T Consensus 78 ~~~~~ad~il~vvD~~~~-~~--~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~~--------------------- 128 (436)
T 2hjg_A 78 IAMDEADVIIFMVNGREG-VT--AADEEVAKILYR-----TKKPVVLAVNKLDNTEMRA--------------------- 128 (436)
T ss_dssp HHHHHCSEEEEEEETTTC-SC--HHHHHHHHHHTT-----CCSCEEEEEECCCC--------------------------
T ss_pred HHHHhCCEEEEEEeCCCC-CC--HHHHHHHHHHHH-----cCCCEEEEEECccCccchh---------------------
Confidence 889999999999999987 33 334566666653 6889999999999864210
Q ss_pred cccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 216 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+..+ |..+. ..+++++||++|. +++|++++.+.++
T Consensus 129 ----~~~~------------~~~lg-~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 129 ----NIYD------------FYSLG-FGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ----CCCS------------SGGGS-SCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred ----hHHH------------HHHcC-CCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 0000 11111 1157899999999 9999999988764
No 138
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.86 E-value=2.8e-21 Score=162.62 Aligned_cols=158 Identities=20% Similarity=0.308 Sum_probs=104.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC-C--------chhh
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS-R--------LRPK 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-~--------~~~~ 133 (268)
+..+|+++|++|||||||+|++++..+. ..+..+++++......+..++ ..+.+|||||+. . +...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~---i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS---ITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE---ECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc---ccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHH
Confidence 3458999999999999999999998752 222223222221111122233 689999999997 3 2233
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
...+++.+|++++|+|+++. + ....++...+.. .+.|+++|+||+|+... .....+.+ +.+..
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~~-~---~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~--~~~~~~~l----~~l~~-- 144 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTRW-T---PDDEMVLNKLRE-----GKAPVILAVNKVDNVQE--KADLLPHL----QFLAS-- 144 (301)
T ss_dssp TTSCCCCEEEEEEEEETTCC-C---HHHHHHHHHHHS-----SSSCEEEEEESTTTCCC--HHHHHHHH----HHHHT--
T ss_pred HHHHHhcCCEEEEEEeCCCC-C---HHHHHHHHHHHh-----cCCCEEEEEECcccCcc--HHHHHHHH----HHHHH--
Confidence 45678889999999999763 3 333455555442 57899999999999752 22222222 22200
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+...++++||++|+ ++++.++|.+.++
T Consensus 145 -------------------------~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 145 -------------------------QMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp -------------------------TSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred -------------------------hcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 0111268999999998 9999999998765
No 139
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=1.4e-21 Score=177.32 Aligned_cols=165 Identities=17% Similarity=0.223 Sum_probs=105.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC--cccc-----cceeec----cccceEEeeccccc---CCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQG-----TVTSME----PNEDTFVLHSESTK---KGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~-----~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~i~DtpG~~ 128 (268)
+.++|+++|+.|+|||||+++|+... +... ...+.. .+.+.......+.+ ++..+.+++||||||.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45789999999999999999997632 1100 000000 00110000011111 4555799999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
+|...+..+++.+|++|+|+|++++ .+.+....|.... . .++|+++|+||+|+.... .++..+.+.+.+.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~g-v~~qt~~~~~~~~-~------~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg- 152 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQG-VEAQTLANCYTAM-E------MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVG- 152 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTC-CCTHHHHHHHHHH-H------TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHH-H------CCCCEEEeeeccCccccc-HHHHHHHHHHHhC-
Confidence 9999999999999999999999997 4455555544333 2 578999999999998654 3333333322110
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
....+++++||++|. +++|+++|.+++++
T Consensus 153 -------------------------------~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 153 -------------------------------IDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp -------------------------------CCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred -------------------------------CCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 001137899999998 99999999998874
No 140
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=6.7e-23 Score=183.53 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=111.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.++|+++|++|+|||||+++|.+..+.....++++...+. ..+...+ ...+++||||||++|...+..+++.+
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~----~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~a 76 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGA----FLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVT 76 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTS----CCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeE----EEEEeCC-CCEEEEEECCChHHHHHHHHHHHccC
Confidence 367899999999999999999999876533222222222211 1122211 14789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|++++ . .......+..+.. .++|+++|+||+|+...... ...+.+.. .
T Consensus 77 D~vILVVDa~dg-~-~~qt~e~l~~~~~------~~vPiIVViNKiDl~~~~~~-~v~~~l~~----~------------ 131 (537)
T 3izy_P 77 DIVILVVAADDG-V-MKQTVESIQHAKD------AHVPIVLAINKCDKAEADPE-KVKKELLA----Y------------ 131 (537)
T ss_dssp SSCEEECBSSSC-C-CHHHHHHHHHHHT------TTCCEEECCBSGGGTTTSCC-SSSSHHHH----T------------
T ss_pred CEEEEEEECCCC-c-cHHHHHHHHHHHH------cCCcEEEEEecccccccchH-HHHHHHHh----h------------
Confidence 999999999996 3 3444444444443 57899999999999754321 11111110 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
+ +....+...++++++||++|+ +++|+++|...+
T Consensus 132 ------~-----~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 132 ------D-----VVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp ------T-----SCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred ------h-----hhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 0 001222345789999999999 999999998764
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=6.2e-21 Score=167.13 Aligned_cols=172 Identities=18% Similarity=0.147 Sum_probs=102.5
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcCC---cccccce--eeccccceEEe---------ecccccC--Cc----eeeEE
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGS---THQGTVT--SMEPNEDTFVL---------HSESTKK--GK----IKPVH 120 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~~---~~~~~~~--~~~~~~~~~~~---------~~~~~~~--~~----~~~~~ 120 (268)
+....+|+++|+.++|||||+++|++.. +...... |+......... ....... +. ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3567899999999999999999998543 2111111 11111000000 0000001 11 25899
Q ss_pred EEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHH
Q 024385 121 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK 200 (268)
Q Consensus 121 i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 200 (268)
+||||||++|...+...+..+|++|+|+|++++ ....+..+.+..+... ...|+++|+||+|+.......+..+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-~~~~qt~e~l~~~~~l-----~~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEP-CPQPQTKEHLMALEIL-----GIDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC-SSCHHHHHHHHHHHHT-----TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC-CCCchhHHHHHHHHHc-----CCCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999988888889999999999999986 2234444444433221 3358999999999986543222222
Q ss_pred HHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 201 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+.+.++.. ...+++++++||++|+ +++|+++|.+.++
T Consensus 159 ~i~~~l~~~-----------------------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 159 QIKEFVKGT-----------------------------IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHTTS-----------------------------TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHhhc-----------------------------CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 222211100 0234689999999998 9999999998765
No 142
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=2.8e-21 Score=175.15 Aligned_cols=162 Identities=19% Similarity=0.315 Sum_probs=107.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--Ccccc-----cce----------eeccccceEEeecccccCCceeeEEEEeCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQG-----TVT----------SMEPNEDTFVLHSESTKKGKIKPVHLVDVP 125 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~-----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dtp 125 (268)
+.++|+++|+.|+|||||+++|+.. .+... ... ++........+.. .++..+.+++||||
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~---~dg~~~~inliDTP 81 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKA---KDGNTYKLHLIDTP 81 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEEC---TTSCEEEEEEECCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEc---CCCCeEEEEEEECC
Confidence 4578999999999999999999752 11100 000 1111111111110 14555789999999
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 205 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~ 205 (268)
||.+|...+..+++.+|++|+|+|++++ ...+....|... .. .++|+++|+||+|+.... .++..+.+.+.
T Consensus 82 Gh~dF~~ev~r~l~~aD~aILVVDa~~g-v~~qt~~~~~~a-~~------~~ipiIvviNKiDl~~a~-~~~v~~el~~~ 152 (600)
T 2ywe_A 82 GHVDFSYEVSRALAACEGALLLIDASQG-IEAQTVANFWKA-VE------QDLVIIPVINKIDLPSAD-VDRVKKQIEEV 152 (600)
T ss_dssp CSGGGHHHHHHHHHTCSEEEEEEETTTB-CCHHHHHHHHHH-HH------TTCEEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred CcHhHHHHHHHHHHhCCEEEEEEECCCC-ccHHHHHHHHHH-HH------CCCCEEEEEeccCccccC-HHHHHHHHHHh
Confidence 9999999999999999999999999997 455555554433 32 688999999999997653 33333332221
Q ss_pred HHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 206 IDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
+ + ....+++++||++|. +++|+++|.+++|+
T Consensus 153 l---------------------g-----------~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 153 L---------------------G-----------LDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp S---------------------C-----------CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred h---------------------C-----------CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 0 0 001147999999998 99999999998874
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=4.3e-21 Score=172.36 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=81.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccc-------------cccee-----eccccceEEeecccccCCceeeEEEEe
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-------------GTVTS-----MEPNEDTFVLHSESTKKGKIKPVHLVD 123 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~-------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D 123 (268)
.+.++|+++|++|+|||||+++|+...... ..... ..++.+.......+.+.+ +.+++||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 467899999999999999999996211000 00000 000000000001112233 6899999
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
|||+.+|......+++.+|++|+|+|++++ ..... ...+..+.. .++|+++|+||+|+....
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g-~~~~t-~~~~~~~~~------~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKG-VEPRT-IKLMEVCRL------RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTC-SCHHH-HHHHHHHHT------TTCCEEEEEECTTSCCSC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCC-CCHHH-HHHHHHHHH------cCCCEEEEEeCCCCcccc
Confidence 999999999999999999999999999997 33333 333433332 678999999999997543
No 144
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.85 E-value=1.1e-20 Score=162.75 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=105.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch---------h
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR---------P 132 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~---------~ 132 (268)
...++++++|++|||||||+|+|.+..+... .....+..... ......+ ..+.+|||||+.+.. .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~---~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 238 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA---SYPFTTRGINV-GQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQ 238 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE---CCTTCSSCEEE-EEEEETT--EEEEEEECTTTSSSCSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC---CCCCeeeceeE-EEEEecC--ceEEEEeCCCccccchhhhhHHHHH
Confidence 3568999999999999999999998764211 11111111111 1111222 578999999986532 1
Q ss_pred hHhhhccCCCEEEEEEeCCCCCC--CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 133 KLDEFLPQAAGIVFVVDALEFLP--NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 133 ~~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
....+...+|++++|+|+++. . ++.....++..+.... .+.|+++|+||+|+......++. ...+.
T Consensus 239 ~~~~~~~~ad~illV~D~s~~-~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~~~~~~~~~----~~~~~--- 306 (357)
T 2e87_A 239 AILALRYLGNLIIYIFDPSEH-CGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVADEENIKRL----EKFVK--- 306 (357)
T ss_dssp HHHGGGGTCSEEEEEECTTCT-TSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTCCHHHHHHH----HHHHH---
T ss_pred HHHHHHhcCCEEEEEEeCCcc-ccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccCChHHHHHH----HHHHH---
Confidence 122344579999999999886 4 5777788887776542 37999999999999754222111 11111
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++++++||++|+ +++++++|.+.+
T Consensus 307 -----------------------------~~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 307 -----------------------------EKGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp -----------------------------HTTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred -----------------------------hcCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.85 E-value=1.8e-21 Score=173.57 Aligned_cols=165 Identities=19% Similarity=0.175 Sum_probs=107.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC----cccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS----THQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
+..+|+++|++|+|||||+++|++.. ... ......++.+.......+..++ ..+.+||||||++|...+..++
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~-~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDK-LPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCccccccc-ccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 35799999999999999999999865 110 0001111111111111122233 6899999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
..+|++|+|+|++++. ..+..+.+..+.. .++|+++|+||+|+......+++.+.+.+.+.. .
T Consensus 95 ~~aD~~ilVvda~~g~--~~qt~e~l~~~~~------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~----~----- 157 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGP--KTQTGEHMLILDH------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS----T----- 157 (482)
T ss_dssp TSCCEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHH----S-----
T ss_pred hhCCEEEEEEecCCCc--cHHHHHHHHHHHH------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhh----h-----
Confidence 9999999999999862 2344444443322 578999999999997532223333333322221 0
Q ss_pred ccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ...+++++++||++|+ +++|+++|.+.+
T Consensus 158 ------------------~-~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 158 ------------------H-NLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp ------------------S-SGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------c-ccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 0 0124589999999999 999999998864
No 146
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.85 E-value=5e-22 Score=173.57 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=104.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------H
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-------L 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~ 134 (268)
...++|+++|++|+|||||++++++..+.. .+..+.++.......+...+. ..+.+|||||+.++... .
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~---~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI---VSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC----------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCc---cCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence 467899999999999999999999887521 111112221212222223332 27899999999887544 4
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
..+++.+|++|+|+|+.. ......|+..+.. .+.|+++|+||+|+......+ ..+.
T Consensus 108 ~~~l~~aD~vllVvD~~~----~~~~~~~l~~l~~------~~~piIvV~NK~Dl~~~~~~~-~~~~------------- 163 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAP----TPYEDDVVNLFKE------MEIPFVVVVNKIDVLGEKAEE-LKGL------------- 163 (423)
T ss_dssp HHHHTSCSEEEEECSSSC----CHHHHHHHHHHHH------TTCCEEEECCCCTTTTCCCTH-HHHH-------------
T ss_pred HHHHhcCCEEEEEEeCCC----hHHHHHHHHHHHh------cCCCEEEEEeCcCCCCccHHH-HHHH-------------
Confidence 568899999999999933 2445566665554 588999999999998765431 1111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+.. ..+++++++||++|. +++++++|.+.++
T Consensus 164 ---------------------l~~-~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 164 ---------------------YES-RYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp ---------------------SSC-CTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred ---------------------HHH-HcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 111 123578999999998 9999999999874
No 147
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.85 E-value=7.8e-21 Score=166.65 Aligned_cols=172 Identities=18% Similarity=0.201 Sum_probs=107.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC---cccccce--eeccccceEEe---------ecccccC--Cc----eeeEEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS---THQGTVT--SMEPNEDTFVL---------HSESTKK--GK----IKPVHL 121 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~---~~~~~~~--~~~~~~~~~~~---------~~~~~~~--~~----~~~~~i 121 (268)
....+|+++|++|+|||||+++|++.. +...... |+........+ ....... +. ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 445799999999999999999998542 2111111 11111111111 0000001 11 257999
Q ss_pred EeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHH
Q 024385 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ 201 (268)
Q Consensus 122 ~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 201 (268)
||||||++|.......+..+|++|+|+|++++ ....+..+.+..+... ...|+++|+||+|+.......+..+.
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-~~~~qt~e~l~~~~~~-----~~~~iivviNK~Dl~~~~~~~~~~~~ 161 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEP-CPRPQTREHLMALQII-----GQKNIIIAQNKIELVDKEKALENYRQ 161 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSC-SSCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCC-CCChhHHHHHHHHHHc-----CCCcEEEEEECccCCCHHHHHHHHHH
Confidence 99999999988888888999999999999986 2233444444333221 34589999999999754221111122
Q ss_pred HHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcCC
Q 024385 202 MEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 268 (268)
Q Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 268 (268)
+.+.++. .....++++++||++|+ +++|+++|.+.+++
T Consensus 162 i~~~l~~-----------------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 162 IKEFIEG-----------------------------TVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHTT-----------------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHh-----------------------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 2111110 00234689999999999 99999999987753
No 148
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=1.9e-21 Score=170.23 Aligned_cols=171 Identities=22% Similarity=0.205 Sum_probs=108.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--------Cccccccee-----eccccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--------STHQGTVTS-----MEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
+...+|+++|++|+|||||+++|++. .+....... .....+..... ..+......+.+||||||+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH--VEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEE--EEEECSSCEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeee--eEeccCCeEEEEEECCChH
Confidence 45689999999999999999999873 111100000 00111111001 1112222689999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEID 207 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~ 207 (268)
+|...+..+++.+|++|+|+|++++ . ..+..+++..+.. .++| +++|+||+|+... .+ ..+.+..++.
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g-~-~~qt~~~l~~~~~------~~ip~iivviNK~Dl~~~--~~-~~~~~~~~~~ 155 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADG-P-MPQTREHILLARQ------VGVPYIVVFMNKVDMVDD--PE-LLDLVEMEVR 155 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTC-C-CHHHHHHHHHHHH------TTCCCEEEEEECGGGCCC--HH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC-C-cHHHHHHHHHHHH------cCCCEEEEEEECccccCc--HH-HHHHHHHHHH
Confidence 9999999999999999999999986 3 4455566654443 5678 8999999999742 11 1122222222
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-------------------chhHHHHHHhhcCC
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-------------------ISQVEQFIREQVKP 268 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-------------------i~~l~~~l~~~~~p 268 (268)
.+..... + ...+++++++||++|. +++|+++|.+++||
T Consensus 156 ~~l~~~~---------------------~--~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 156 DLLNQYE---------------------F--PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHHHTT---------------------S--CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhc---------------------c--cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 2211100 0 0124589999999984 67899999887763
No 149
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.84 E-value=5.2e-21 Score=166.97 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=107.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC-------ccccc-c----eeeccccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS-------THQGT-V----TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~-------~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
+..+|+++|++|+|||||+++|++.. +.... . .......+... ....+......+.+||||||++|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence 45789999999999999999998631 11000 0 00011111110 01112222368999999999999
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
...+..+++.+|++|+|+|++++ . ..+..+++..+.. .++| +++|+||+|+... .+ ..+.+..++.++
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g-~-~~qt~e~l~~~~~------~~vp~iivviNK~Dl~~~--~~-~~~~~~~~~~~~ 148 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDG-P-MPQTREHLLLARQ------IGVEHVVVYVNKADAVQD--SE-MVELVELEIREL 148 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTC-S-CHHHHHHHHHHHH------TTCCCEEEEEECGGGCSC--HH-HHHHHHHHHHHH
T ss_pred HHHHHhhHhhCCEEEEEEECCCC-C-CHHHHHHHHHHHH------cCCCeEEEEEECcccCCC--HH-HHHHHHHHHHHH
Confidence 88999999999999999999996 3 3444455543332 5778 7899999999752 11 112222222222
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-----------chhHHHHHHhhcCC
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVKP 268 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~p 268 (268)
..... +. ...++++++||++|. +++|+++|.+++++
T Consensus 149 l~~~~---------------------~~--~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 149 LTEFG---------------------YK--GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHTT---------------------SC--TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHcC---------------------CC--cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 11100 00 124689999999963 78999999987763
No 150
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.84 E-value=5.2e-21 Score=169.95 Aligned_cols=162 Identities=19% Similarity=0.261 Sum_probs=107.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 141 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 141 (268)
++.++|+++|++|+|||||+++|.+..+......+++...+.+ .+..++ ..+++||||||++|...+..+++.+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~----~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~a 75 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAY----HVETEN--GMITFLDTPGHAAFTSMRARGAQAT 75 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCC----CCCTTS--SCCCEECCCTTTCCTTSBCSSSBSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEE----EEEECC--EEEEEEECCCcHHHHHHHHHHHhhC
Confidence 4678999999999999999999987655332222222222221 122334 4789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccc
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 221 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 221 (268)
|++|+|+|++++. ..+..+.+..+.. .++|+++++||+|+...... . +
T Consensus 76 D~aILVVda~~g~--~~qT~e~l~~~~~------~~vPiIVviNKiDl~~~~~~-~-----------------------v 123 (501)
T 1zo1_I 76 DIVVLVVAADDGV--MPQTIEAIQHAKA------AQVPVVVAVNKIDKPEADPD-R-----------------------V 123 (501)
T ss_dssp SSEEEEEETTTBS--CTTTHHHHHHHHH------TTCCEEEEEECSSSSTTCCC-C-----------------------T
T ss_pred CEEEEEeecccCc--cHHHHHHHHHHHh------cCceEEEEEEeccccccCHH-H-----------------------H
Confidence 9999999998851 2222233333322 67899999999999753210 0 0
Q ss_pred cCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 222 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 222 ~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
...+. ...+.-..+...++++++||++|+ +++|+++|...
T Consensus 124 ~~~l~----~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 124 KNELS----QYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TCCCC----CCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HHHHH----HhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 00000 000000112235799999999999 99999998754
No 151
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=1.5e-20 Score=165.96 Aligned_cols=174 Identities=21% Similarity=0.233 Sum_probs=104.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--Cccccccee-------------------------eccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTS-------------------------MEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 114 (268)
+..++|+++|++|+|||||+++|+.. .+....... ...+.+.......+. .
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~--~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE--T 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE--C
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe--c
Confidence 45689999999999999999999864 332111000 001111111111122 2
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHH-------HHHHHHHhcCCccCCC-CcEEEEeec
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS-------EYLYDILTNSTVVKKK-IPVLICCNK 186 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~-~piivv~nK 186 (268)
..+.+.+||||||++|...+..+++.+|++|+|+|++++ +++... +.+..... .+ .|+++|+||
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~g--sfe~~~~~~~qt~~~~~~~~~------~~~~~iivviNK 153 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG--EYEAGMSVEGQTREHIILAKT------MGLDQLIVAVNK 153 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT--HHHHHHSTTCHHHHHHHHHHH------TTCTTCEEEEEC
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCC--ccccccccchHHHHHHHHHHH------cCCCeEEEEEEc
Confidence 236899999999999999999999999999999999984 455332 22222221 34 469999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-ch---------
Q 024385 187 TDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS--------- 256 (268)
Q Consensus 187 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~--------- 256 (268)
+|+......++..+.+.+++..+..... |. ..+++++++||++|+ +.
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~---------------------~~--~~~~~~i~iSA~~g~~v~e~~~~~~~~ 210 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYG---------------------FN--TNKVRFVPVVAPSGDNITHKSENMKWY 210 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTT---------------------CC--CTTCEEEECBTTTTBTTTBCCSSCTTC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcC---------------------CC--cCCceEEEeecccCccccccccccccc
Confidence 9998642111111222222322211100 00 124689999999997 65
Q ss_pred ---hHHHHHHhhcCC
Q 024385 257 ---QVEQFIREQVKP 268 (268)
Q Consensus 257 ---~l~~~l~~~~~p 268 (268)
.|+++|....+|
T Consensus 211 ~g~~Ll~~l~~~~~p 225 (435)
T 1jny_A 211 NGPTLEEYLDQLELP 225 (435)
T ss_dssp CSCCHHHHHTTCCCC
T ss_pred cchhHHHHHhccCCC
Confidence 677877765443
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.83 E-value=8e-21 Score=156.66 Aligned_cols=172 Identities=12% Similarity=0.139 Sum_probs=98.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccc-cceEEeecccccCCceeeEEEEeCCCCCCchhh-------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPN-EDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------- 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------- 133 (268)
.+..+|+++|++|||||||+|+|++..... .+..++ ++.........+.+ ..+.+|||||+.++...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~---~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~ 94 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFE---SKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKE 94 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSC---CCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcc---cCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHH
Confidence 467899999999999999999999876321 111121 11111111223344 58999999998765322
Q ss_pred ----HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEee-cCCCCCCCCHHHHHHH-HHHHHH
Q 024385 134 ----LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN-KTDKVTAHTKEFIRKQ-MEKEID 207 (268)
Q Consensus 134 ----~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~n-K~Dl~~~~~~~~~~~~-l~~~l~ 207 (268)
...+++.+|++|+|+|++...........++....... ...|+++|+| |+|+... ........ -...+.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~ 169 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED----AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALS 169 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG----GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch----hhccEEEEEEcccccCCc-cHHHHHHhcchHHHH
Confidence 23477899999999999874111223334444443211 2456666666 9999853 32221110 001111
Q ss_pred HHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 208 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+...+.. ....+..+++||++|. +++++++|.+.+
T Consensus 170 ~~~~~~~~-----------------------~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 170 KLVAACGG-----------------------RICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp HHHHHTTT-----------------------CEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-----------------------eEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 11111100 0000011788999998 999999998764
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=1.5e-20 Score=166.14 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=100.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh----------
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK---------- 133 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---------- 133 (268)
..+++++|++|||||||+|++.+... ...+..++++.......+.++| ..+.+|||||+.+....
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~---~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~ 254 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKER---ALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTT---EEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCC
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcc---cccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHH
Confidence 46999999999999999999998764 1222223333333334445566 46899999998543221
Q ss_pred --HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC--HHHHHHHHHHHHHHH
Q 024385 134 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKL 209 (268)
Q Consensus 134 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~l~~~l~~~ 209 (268)
...+++.+|++++|+|++++ .+... .++...+.. .++|+++|+||+|+..... .+++.+.+.+.
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~-~~~~~--~~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~---- 322 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQG-ITRQD--QRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREK---- 322 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTC-CCHHH--HHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHH----
T ss_pred HHHHHHHhhCCEEEEEEeCCCC-CCHHH--HHHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHH----
Confidence 23467789999999999986 33332 334344332 6899999999999975432 33333332221
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
+.. ....+++++||++|. +++|++.+.+.
T Consensus 323 --------------------------~~~-~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 323 --------------------------LYF-IDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp --------------------------CGG-GTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred --------------------------hcc-CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 111 123479999999998 99999888764
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.83 E-value=1.9e-20 Score=167.42 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=97.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--ccccccee-------------------------eccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGTVTS-------------------------MEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 114 (268)
+...+|+++|++|+|||||+++|++.. +......+ ..++.+.......+ ..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~--~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEE--EC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEE--ec
Confidence 567899999999999999999997652 11100000 00011110001111 12
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCH-----HHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNC-----SAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
..+.+.||||||+++|...+..+++.+|++|+|+|++++ .+. .....+...+.... ...|+++|+||+|+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g-~~~~~~~~~~qt~e~~~~~~~~----~~~~iIvviNK~Dl 183 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN-AFESGFDLDGQTKEHMLLASSL----GIHNLIIAMNKMDN 183 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-------CCCCHHHHHHHHHHHHT----TCCCEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCC-ccccccchhhhHHHHHHHHHHc----CCCcEEEEEECcCc
Confidence 236899999999999999999999999999999999986 211 12222222222221 23569999999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chh
Q 024385 190 VTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ 257 (268)
Q Consensus 190 ~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~ 257 (268)
.... ..+++.+.+...+..+ ......++|+++||++|+ +++
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~---------------------------g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDI---------------------------GFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHH---------------------------TCCGGGEEEEECCSSSCTTSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHc---------------------------CCCcccceEEEEeeecCCCccc
Confidence 7632 1222333333322221 001235789999999998 764
No 155
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=8.7e-21 Score=168.50 Aligned_cols=155 Identities=21% Similarity=0.284 Sum_probs=101.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCC--------CCCchhh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPG--------HSRLRPK 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG--------~~~~~~~ 133 (268)
...++|+++|.+|||||||+|+|++..+. .....+..+.........+.+ ..+.+||||| ++.++..
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~---~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~ 95 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS---IVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQ 95 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCS--SCCEEECCCC------CCHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc---ccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHH
Confidence 45689999999999999999999987652 222233344333333344445 5899999999 5556677
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 213 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 213 (268)
...+++.+|++|+|+|+.++ +.....++..++.. .++|+++|+||+|+..... .
T Consensus 96 ~~~~~~~ad~il~VvD~~~~---~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~~------~------------ 149 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREG---VTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMRA------N------------ 149 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSC---SCHHHHHHHHHHTT-----CCSCEEEEEECC--------------------------
T ss_pred HHhhHhhCCEEEEEEeCCCC---CChHHHHHHHHHHH-----cCCCEEEEEECccchhhhh------h------------
Confidence 78889999999999999876 44556677777764 6899999999999853210 0
Q ss_pred hccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 214 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
..+ |..+.. ...+++||++|. +++|++++.+.++
T Consensus 150 -------~~e------------~~~lg~-~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 150 -------IYD------------FYSLGF-GEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp --------CC------------SGGGSS-SSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred -------HHH------------HHHcCC-CceEEeecccccchHHHHHHHHhhcc
Confidence 000 000111 135689999998 9999999987653
No 156
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.83 E-value=7e-20 Score=161.62 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc--ccccceee-----ccccc--eE-----------------Eee-cccccCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTVTSM-----EPNED--TF-----------------VLH-SESTKKGK 115 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~~~~~-----~~~~~--~~-----------------~~~-~~~~~~~~ 115 (268)
...+|+++|++|+|||||+++|+++.. .......+ .+.+. .+ +.. ........
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 457999999999999999999986531 10000000 00000 00 000 00001112
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCC-cEEEEeecCCCCC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI-PVLICCNKTDKVT 191 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-piivv~nK~Dl~~ 191 (268)
...+.+||||||++|...+..+++.+|++|+|+|++++ . .....+++..+.. .+. |+++|+||+|+..
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g-~-~~qt~~~l~~~~~------~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG-V-QTQTRRHSYIASL------LGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC-S-CHHHHHHHHHHHH------TTCCEEEEEEECTTTTT
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC-C-cHHHHHHHHHHHH------cCCCeEEEEEEcCcCCc
Confidence 26799999999999999999999999999999999987 2 3445555543332 344 6999999999975
No 157
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.82 E-value=2.4e-20 Score=160.83 Aligned_cols=148 Identities=15% Similarity=0.140 Sum_probs=102.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEE
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 145 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii 145 (268)
+|+++|++|+|||||+++|+. .-.|+.. .... +...+ ..+++||||||++|......+++.+|++|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~--~~~~----~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ai 88 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------KGTSSDI--TMYN----NDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAV 88 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------EEEESSS--EEEE----ECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh------CCEEEEe--eEEE----EecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEE
Confidence 999999999999999999982 1122221 1111 12233 57999999999999988889999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE-EEEee-cCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccC
Q 024385 146 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LICCN-KTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 223 (268)
Q Consensus 146 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi-ivv~n-K~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 223 (268)
+|+| +.+ ...+..+++..+.. .++|. ++++| |+|+ .....++. .++++.+
T Consensus 89 lVvd-~~g--~~~qt~e~~~~~~~------~~i~~~ivvvNNK~Dl-~~~~~~~~----~~~i~~~-------------- 140 (370)
T 2elf_A 89 LCIP-PQG--LDAHTGECIIALDL------LGFKHGIIALTRSDST-HMHAIDEL----KAKLKVI-------------- 140 (370)
T ss_dssp EEEC-TTC--CCHHHHHHHHHHHH------TTCCEEEEEECCGGGS-CHHHHHHH----HHHHHHH--------------
T ss_pred EEEc-CCC--CcHHHHHHHHHHHH------cCCCeEEEEEEeccCC-CHHHHHHH----HHHHHHH--------------
Confidence 9999 654 35566666554443 46777 89999 9999 42211212 2222222
Q ss_pred cccCCCCCCCeeeccC-CceeEEEE--eeecc---CC-chhHHHHHHhhcC
Q 024385 224 DFTLGIPGQAFSFSQC-HNKVSVAE--ASGLT---GE-ISQVEQFIREQVK 267 (268)
Q Consensus 224 ~~~~~~~~~~f~f~~~-~~~~~~~~--~Sa~~---g~-i~~l~~~l~~~~~ 267 (268)
+... ...+++++ +||++ |+ +++|+++|.+.++
T Consensus 141 ------------l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 141 ------------TSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp ------------TTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred ------------HHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 0000 12468999 99999 98 9999999988754
No 158
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.82 E-value=1.8e-20 Score=159.66 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=106.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecccccCCceeeEEEEeCCCCC----CchhhHhhh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS----RLRPKLDEF 137 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~----~~~~~~~~~ 137 (268)
..+|+++|.+|||||||+++|++..... ...++..++.+... +++. ..+.+|||||+. .+......|
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~------~~~~-~~~~l~DtPG~i~~a~~~~~l~~~f 230 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVE------TDDG-RSFVMADLPGLIEGAHQGVGLGHQF 230 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEE------CSSS-CEEEEEEHHHHHHHTTCTTTTHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEE------eCCC-ceEEEecCCCCcccccccchhHHHH
Confidence 3579999999999999999999875421 12234444433322 2221 478999999953 333343444
Q ss_pred ---ccCCCEEEEEEeCCC---CCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024385 138 ---LPQAAGIVFVVDALE---FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 211 (268)
Q Consensus 138 ---~~~~d~ii~v~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 211 (268)
++.+|++|+|+|+++ . ++++....|+.++..... ...++|+++|+||+|+.... +..+.+.+ .
T Consensus 231 l~~i~~~d~ll~VvD~s~~~~~-~~~~~~~~~~~eL~~~~~-~l~~~p~ilV~NK~Dl~~~~---e~~~~l~~---~--- 299 (342)
T 1lnz_A 231 LRHIERTRVIVHVIDMSGLEGR-DPYDDYLTINQELSEYNL-RLTERPQIIVANKMDMPEAA---ENLEAFKE---K--- 299 (342)
T ss_dssp HHHHHHCCEEEEEEESSCSSCC-CHHHHHHHHHHHHHHSCS-STTTSCBCBEEECTTSTTHH---HHHHHHHH---H---
T ss_pred HHHHHhccEEEEEEECCccccc-ChHHHHHHHHHHHHHhhh-hhcCCCEEEEEECccCCCCH---HHHHHHHH---H---
Confidence 455999999999987 4 567888877777766421 11589999999999997421 11111111 1
Q ss_pred hhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 212 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+ ....+++++||++|+ +++|+++|.+.+.
T Consensus 300 ------------------------l---~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 300 ------------------------L---TDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp ------------------------C---CSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred ------------------------h---hcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 0 111468999999999 9999999988753
No 159
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.82 E-value=6.3e-20 Score=163.12 Aligned_cols=123 Identities=21% Similarity=0.161 Sum_probs=67.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc--CCcccc--------------------cceee-----ccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG--------------------TVTSM-----EPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~~--------------------~~~~~-----~~~~~~~~~~~~~~~~~ 114 (268)
+...+|+++|++|+|||||+++|+. +.+... ..... ....+...-...+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4567999999999999999999974 222110 00000 00011000011122233
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC--CCH---HHHHHHHHHHHhcCCccCCCCc-EEEEeecCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PNC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTD 188 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~---~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~D 188 (268)
..+.+||||||++|...+..+++.+|++|+|||++++. .+| .+..+.+..... .++| +++|+||+|
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~------~~vp~iivviNK~D 192 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART------QGINHLVVVINKMD 192 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH------TTCSSEEEEEECTT
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH------cCCCEEEEEEECcc
Confidence 68999999999999999999999999999999999861 011 122222322222 5677 999999999
Q ss_pred CCCC
Q 024385 189 KVTA 192 (268)
Q Consensus 189 l~~~ 192 (268)
+...
T Consensus 193 l~~~ 196 (467)
T 1r5b_A 193 EPSV 196 (467)
T ss_dssp STTC
T ss_pred CCCc
Confidence 9653
No 160
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=7.7e-20 Score=162.18 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC--Ccccccc--------------------ee-----eccccceEEeecccccCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTV--------------------TS-----MEPNEDTFVLHSESTKKGK 115 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~~~--------------------~~-----~~~~~~~~~~~~~~~~~~~ 115 (268)
...+|+++|++|+|||||+++|++. .+..... .. .....+.......+ ...
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~--~~~ 83 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF--ETP 83 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE--ECS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE--ecC
Confidence 4578999999999999999999864 2211000 00 00111100000011 122
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHH-------HHHHHHHHHHhcCCccCCCCc-EEEEeecC
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCS-------AASEYLYDILTNSTVVKKKIP-VLICCNKT 187 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~p-iivv~nK~ 187 (268)
...+.+||||||++|...+..+++.+|++|+|+|++++ . +. +..+.+..... .++| +++|+||+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g-~-~~~sf~~~~qt~~~~~~~~~------~~v~~iivviNK~ 155 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG-E-FEAGISKDGQTREHALLAFT------LGVRQLIVAVNKM 155 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH-H-HHHHTCTTSHHHHHHHHHHH------TTCCEEEEEEECG
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC-c-cccccCcchhHHHHHHHHHH------cCCCeEEEEEEcc
Confidence 26899999999999999999999999999999999975 1 22 33333332222 4565 99999999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
|+..
T Consensus 156 Dl~~ 159 (458)
T 1f60_A 156 DSVK 159 (458)
T ss_dssp GGGT
T ss_pred cccc
Confidence 9973
No 161
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=5.1e-21 Score=174.32 Aligned_cols=173 Identities=16% Similarity=0.183 Sum_probs=91.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCc--cccc--------------------c-----eeeccccceEEeecccccCCce
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGST--HQGT--------------------V-----TSMEPNEDTFVLHSESTKKGKI 116 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~~--------------------~-----~~~~~~~~~~~~~~~~~~~~~~ 116 (268)
..+|+++|++|+|||||+++|+.... .... . ....++++.......+...+
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~-- 254 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK-- 254 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC--
Confidence 45799999999999999999964210 0000 0 00011111111112222233
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC--CC---HHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PN---CSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~ 190 (268)
..+.|||||||.+|...+..+++.+|++|+|||++++. .. .......+..+.. .++| +|+|+||+|+.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~------lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA------LGISEIVVSVNKLDLM 328 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH------SSCCCEEEEEECGGGG
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH------cCCCeEEEEEeccccc
Confidence 68899999999999999999999999999999998741 01 1222233322222 4565 99999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-ch-------------
Q 024385 191 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS------------- 256 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~------------- 256 (268)
... .+. .+.+..++..+.. .. .+ ....+++++++||++|. ++
T Consensus 329 ~~~-~~~-~~~i~~el~~~l~--~~-----------~g---------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g 384 (592)
T 3mca_A 329 SWS-EDR-FQEIKNIVSDFLI--KM-----------VG---------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384 (592)
T ss_dssp TTC-HHH-HHHHHHHHHHHHT--TT-----------SC---------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCS
T ss_pred ccc-HHH-HHHHHHHHHHHHH--Hh-----------hC---------CCccceEEEEEecccCcccccccccccccccch
Confidence 522 211 2222222332200 00 00 01245789999999998 76
Q ss_pred -hHHHHHHhhcCC
Q 024385 257 -QVEQFIREQVKP 268 (268)
Q Consensus 257 -~l~~~l~~~~~p 268 (268)
.|++.|.+.++|
T Consensus 385 ~~Lle~l~~~~pp 397 (592)
T 3mca_A 385 PTLLSALDQLVPP 397 (592)
T ss_dssp CCHHHHHHTSCCC
T ss_pred HHHHHHHHhhccc
Confidence 799999887765
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.8e-19 Score=164.61 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=98.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccc--e-------------------------eeccccceEEeecccccCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV--T-------------------------SMEPNEDTFVLHSESTKKG 114 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~--~-------------------------~~~~~~~~~~~~~~~~~~~ 114 (268)
+...+|+++|++|+|||||+++|++........ . ...++++.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 456899999999999999999998763211000 0 0001111111111112223
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCC--CC---HHHHHHHHHHHHhcCCccCCC-CcEEEEeecCC
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PN---CSAASEYLYDILTNSTVVKKK-IPVLICCNKTD 188 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~-~piivv~nK~D 188 (268)
+.+.|||||||++|...+..+++.+|++|+|||++++. .+ .......+..+.. .+ .|+++|+||+|
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~------lgi~~iIVVvNKiD 316 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS------LGIHNLIIAMNKMD 316 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT------TTCCEEEEEEECTT
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH------cCCCeEEEEEeccc
Confidence 68999999999999999999999999999999998730 00 1122232222222 34 45999999999
Q ss_pred CCCCC--CHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chh
Q 024385 189 KVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ 257 (268)
Q Consensus 189 l~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~ 257 (268)
+.... ..+++.+.+...+..+ . ....+++++++||++|+ +++
T Consensus 317 l~~~~~~~~~ei~~~l~~~l~~~----g-----------------------~~~~~~~~i~vSA~tG~gI~e 361 (611)
T 3izq_1 317 NVDWSQQRFEEIKSKLLPYLVDI----G-----------------------FFEDNINWVPISGFSGEGVYK 361 (611)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHH----T-----------------------CCGGGCEEEECCTTTCTTTSS
T ss_pred ccchhHHHHHHHHHHHHHHHHhh----c-----------------------ccccCccEEeeecccCCCccc
Confidence 97632 1222333333322221 0 00235689999999998 764
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.81 E-value=4.2e-20 Score=151.19 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=77.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCC--------CCchhh
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH--------SRLRPK 133 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~--------~~~~~~ 133 (268)
....+|+++|.+|||||||+|++++..+.......... +..........++ ..+.+|||||. +++...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~--T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSV--TRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCc--cccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 46789999999999999999999988763322111111 1111111222334 58999999997 333333
Q ss_pred Hhhhc----cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 134 LDEFL----PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 134 ~~~~~----~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
...++ +.+|++|+|+|++..........+++....... ..+.|+++|+||+|+...
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~---~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGED---VLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGG---GGGGEEEEEECGGGGTTC
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChh---hhccEEEEEEchHhcCCC
Confidence 43443 899999999999864212223344444443221 137899999999999764
No 164
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=6.3e-20 Score=174.16 Aligned_cols=172 Identities=19% Similarity=0.224 Sum_probs=107.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC-------ccccc-ce--eeccccceEEeecccccCCceeeEEEEeCCCCCCch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS-------THQGT-VT--SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~-------~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 131 (268)
....+|+++|++|+|||||+++|++.. +.... .. ..+.+.+.........+.+....+.+||||||++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 445789999999999999999998641 00000 00 001111111000111222333689999999999999
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 210 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 210 (268)
.....+++.+|++|+|||++++ . ..+..+++..+.. .++| +++|+||+|+... . +..+.+..++..+.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdG-v-~~QTrEhL~ll~~------lgIP~IIVVINKiDLv~d--~-e~le~i~eEi~elL 442 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDG-P-MPQTREHILLGRQ------VGVPYIIVFLNKCDMVDD--E-ELLELVEMEVRELL 442 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTC-S-CTTHHHHHHHHHH------HTCSCEEEEEECCTTCCC--H-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEcCCcc-C-cHHHHHHHHHHHH------cCCCeEEEEEeecccccc--h-hhHHHHHHHHHHHH
Confidence 9999999999999999999986 2 3344455544332 4678 7999999999752 1 11122222222221
Q ss_pred HhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccC--------C-chhHHHHHHhhcC
Q 024385 211 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG--------E-ISQVEQFIREQVK 267 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g--------~-i~~l~~~l~~~~~ 267 (268)
.... + ....++++++||++| + +++|+++|.++++
T Consensus 443 k~~G---------------------~--~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 443 SQYD---------------------F--PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHTT---------------------S--CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred Hhcc---------------------c--cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 1100 0 012468999999999 3 8899999998776
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.79 E-value=1.3e-18 Score=149.74 Aligned_cols=160 Identities=21% Similarity=0.228 Sum_probs=96.4
Q ss_pred CCe-EEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecccccCCceeeEEEEeCCCCCC---------ch
Q 024385 64 STT-IVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR---------LR 131 (268)
Q Consensus 64 ~~~-i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~---------~~ 131 (268)
..+ |+++|++|||||||+|+|++..+... ..+|..+.. ..+.++| ..+.+|||||+.. ++
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~------~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~ 249 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR------YAIPINN--RKIMLVDTVGFIRGIPPQIVDAFF 249 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCE------EEEEETT--EEEEEEECCCBCSSCCGGGHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEE------EEEEECC--EEEEEEeCCCchhcCCHHHHHHHH
Confidence 344 99999999999999999998765221 112222222 2233445 4789999999732 22
Q ss_pred hhHhhhccCCCEEEEEEeCCCCCC--CHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Q 024385 132 PKLDEFLPQAAGIVFVVDALEFLP--NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 209 (268)
Q Consensus 132 ~~~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 209 (268)
.. ...+..+|++++|+|++++ . ..... ..+..++.... ..+.|+++|+||+|+.... .......+......+
T Consensus 250 ~t-l~~~~~aD~il~VvD~s~~-~~~~~~~~-~~~~~~L~~l~--~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l 323 (364)
T 2qtf_A 250 VT-LSEAKYSDALILVIDSTFS-ENLLIETL-QSSFEILREIG--VSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKEL 323 (364)
T ss_dssp HH-HHGGGGSSEEEEEEETTSC-HHHHHHHH-HHHHHHHHHHT--CCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHH
T ss_pred HH-HHHHHhCCEEEEEEECCCC-cchHHHHH-HHHHHHHHHhC--cCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHh
Confidence 22 2357889999999999886 3 22222 22233333211 1578999999999997643 222111111111110
Q ss_pred HHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 210 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
. ..+.+++++||++|+ +++|+++|.+.+
T Consensus 324 ---------------------------~--~~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 324 ---------------------------Y--SPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---------------------------C--SCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------------c--CCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 0 113467999999998 999999998764
No 166
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.79 E-value=9.9e-19 Score=157.19 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=83.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--ccc-----------cccee---eccccceEEee--cccccCCceeeEEEEe
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ-----------GTVTS---MEPNEDTFVLH--SESTKKGKIKPVHLVD 123 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~~-----------~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~i~D 123 (268)
.+.++|+++|++|+|||||+++|+... +.. ..... .+...+..... ..+.+.+ +.+++||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 467899999999999999999998632 100 00000 00011100000 0112233 7899999
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
||||.+|......+++.+|++|+|+|++++. .......+. .... .++|+++|+||+|+.... ..+..+.++
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~--~~~t~~~~~-~~~~-----~~ipiivviNK~Dl~~~~-~~~~~~~i~ 159 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV--EDRTRKLME-VTRL-----RDTPILTFMNKLDRDIRD-PMELLDEVE 159 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCS--CHHHHHHHH-HHTT-----TTCCEEEEEECTTSCCSC-HHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccc--hHHHHHHHH-HHHH-----cCCCEEEEEcCcCCcccc-HHHHHHHHH
Confidence 9999999999999999999999999999872 122233332 2222 588999999999997654 333333333
No 167
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=1.9e-18 Score=160.27 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=97.8
Q ss_pred cHHhHHHHHHHHHHHhHhhhccCChH-------HHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHH
Q 024385 12 GMEQWKKELEEWLNRGIEFINQIPPT-------QLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 12 ~~~~w~~~~~~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l 84 (268)
.+.+|+..+...+.++..++...... ..+......+.... ..+ .....+|+++|.+|+|||||+|+|
T Consensus 16 ~~~~~r~~L~~~l~~le~~ld~~e~~~~~~~~~~~l~~~l~~L~~~~-----~~l-~~~~~~V~VvG~~naGKSSLlNaL 89 (695)
T 2j69_A 16 RVAQVRSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIAS-----KNL-QQGVFRLLVLGDMKRGKSTFLNAL 89 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCCCHHHHHHHHHHH-----HHH-HHCCEEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH-----HHh-ccCCCEEEEECCCCCCHHHHHHHH
Confidence 46788888888877777666642210 00000000111111 111 357889999999999999999999
Q ss_pred HcCCcccccceeecccc--------------ceEEeecc-------------cccCC-----------------------
Q 024385 85 RDGSTHQGTVTSMEPNE--------------DTFVLHSE-------------STKKG----------------------- 114 (268)
Q Consensus 85 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~-------------~~~~~----------------------- 114 (268)
++..+.. .+..|++ +....... ....+
T Consensus 90 lg~~~~~---v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i~ 166 (695)
T 2j69_A 90 IGENLLP---SDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVE 166 (695)
T ss_dssp HTSSCSC---CCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEEE
T ss_pred hCCCCCC---CCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHHhhccccccccceEEEEE
Confidence 9876521 1111211 00000000 00000
Q ss_pred ---ce--eeEEEEeCCCCCC---chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 115 ---KI--KPVHLVDVPGHSR---LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 115 ---~~--~~~~i~DtpG~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
.. ..+.+|||||..+ .......+++.+|++|+|+|++++ .+...... +...+.. .+.|+++|+||
T Consensus 167 ~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~-~s~~e~~~-l~~~l~~-----~~~~iiiVlNK 239 (695)
T 2j69_A 167 YPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP-CTLGERRY-LENYIKG-----RGLTVFFLVNA 239 (695)
T ss_dssp ECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST-TCHHHHHH-HHHHTTT-----SCCCEEEEEEC
T ss_pred ccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc-cchhHHHH-HHHHHHh-----hCCCEEEEEEC
Confidence 00 3689999999654 345567889999999999999886 44444433 3333322 46789999999
Q ss_pred CCCCCC
Q 024385 187 TDKVTA 192 (268)
Q Consensus 187 ~Dl~~~ 192 (268)
+|+...
T Consensus 240 ~Dl~~~ 245 (695)
T 2j69_A 240 WDQVRE 245 (695)
T ss_dssp GGGGGG
T ss_pred cccccc
Confidence 999754
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.78 E-value=1.8e-19 Score=151.33 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=98.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCccccc--ceeeccccceE------------------E-ee---ccc-----cc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTF------------------V-LH---SES-----TK 112 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~~~~~~~~~~~------------------~-~~---~~~-----~~ 112 (268)
...++|+++|.+|||||||+|+|++..+.... ..+..|+.... . .. ..+ .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999998763111 11111210000 0 00 000 00
Q ss_pred CC-----------------ceeeEEEEeCCCCCC-------------chhhHhhhccCCCEEE-EEEeCCCCCCCHHHHH
Q 024385 113 KG-----------------KIKPVHLVDVPGHSR-------------LRPKLDEFLPQAAGIV-FVVDALEFLPNCSAAS 161 (268)
Q Consensus 113 ~~-----------------~~~~~~i~DtpG~~~-------------~~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~~ 161 (268)
.| ....+.+|||||+.. +......|++.++++| +|+|+++. .......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC-GGGCHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc-hhhhHHH
Confidence 00 025899999999742 3445667888888776 79999875 2222222
Q ss_pred HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccC-C
Q 024385 162 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQC-H 240 (268)
Q Consensus 162 ~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~-~ 240 (268)
.++..+ . ..+.|+++|+||+|+...... ..+.+.. . +..+ .
T Consensus 183 ~~~~~~-~-----~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~-------------------~-----------~~~~~~ 224 (299)
T 2aka_B 183 KIAKEV-D-----PQGQRTIGVITKLDLMDEGTD--ARDVLEN-------------------K-----------LLPLRR 224 (299)
T ss_dssp HHHHHH-C-----TTCSSEEEEEECGGGSCTTCC--CHHHHTT-------------------C-----------SSCCTT
T ss_pred HHHHHh-C-----CCCCeEEEEEEccccCCCCch--HHHHHhC-------------------C-----------cCcCCC
Confidence 333332 2 157899999999999764331 1111110 0 0000 1
Q ss_pred ceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 241 NKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 241 ~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
+..+++++||++|+ +++++++|.+.
T Consensus 225 ~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 225 GYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp CEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CcEEEECCChhhccccccHHHHHHHH
Confidence 23478999999998 99999988653
No 169
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.78 E-value=1.3e-18 Score=148.85 Aligned_cols=122 Identities=14% Similarity=0.178 Sum_probs=91.4
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCC---------CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
+.+.+|||+|++.++..|..|+++++++|||+|+++. .+++.+...|+..+..+... .++|+++|+||+
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~--~~~piiLv~NK~ 270 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF--TDTSIILFLNKK 270 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG--TTSEEEEEEECH
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc--cCCcEEEEEECc
Confidence 6899999999999999999999999999999999983 15688999999998875432 689999999999
Q ss_pred CCCCC-----------------CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeee
Q 024385 188 DKVTA-----------------HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG 250 (268)
Q Consensus 188 Dl~~~-----------------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa 250 (268)
|+... .+.++..+.+......+ . .......+.+++|||
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l------------~-------------~~~~~~~~~~~etSA 325 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDL------------N-------------KRKDTKEIYTHFTCA 325 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTT------------C-------------SCTTTCCEEEEECCT
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHh------------h-------------cccCCCceEEEEEEC
Confidence 98521 23333333333221111 0 000134678999999
Q ss_pred ccCC-chhHHHHHHhh
Q 024385 251 LTGE-ISQVEQFIREQ 265 (268)
Q Consensus 251 ~~g~-i~~l~~~l~~~ 265 (268)
++|+ |+++++++.+.
T Consensus 326 ~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 326 TDTKNVQFVFDAVTDV 341 (353)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHH
Confidence 9998 99999998764
No 170
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=144.46 Aligned_cols=127 Identities=15% Similarity=0.154 Sum_probs=75.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC-----------c
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR-----------L 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-----------~ 130 (268)
...++|+++|++|+|||||+|+|++..+.....+... ++.........+.+ ..+.+|||||..+ +
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~--~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKS--ITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCc--eeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 4678999999999999999999999876433222111 11111112223344 5789999999653 3
Q ss_pred hhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 131 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 131 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
...+..+++.+|++|+|+|++.. .. ....++..+..... .....|+++|+||+|+......+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~-~~--~~~~~l~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRY-TE--EEHKATEKILKMFG-ERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCC-SS--HHHHHHHHHHHHHH-HHHGGGEEEEEECGGGC------
T ss_pred HHHHHhcCCCCcEEEEEeeCCCC-CH--HHHHHHHHHHHHhh-hhccceEEEEEeCCccCCcccHH
Confidence 33344566788999999999875 32 22333333332100 01346999999999997655444
No 171
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=153.71 Aligned_cols=168 Identities=14% Similarity=0.276 Sum_probs=86.2
Q ss_pred hhcCCCeEEEEcCCCCcHHHHHHHHHcCCc-ccccce----eeccccceEEeecccccCCceeeEEEEeCCCC-------
Q 024385 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGST-HQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH------- 127 (268)
Q Consensus 60 ~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~------- 127 (268)
.....++|+++|++|+|||||+++|.+... ...... ...++.+.......+...+....+++|||||+
T Consensus 33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----------
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence 345678999999999999999999876543 221111 01122222222333344555568999999999
Q ss_pred CCchhhHh-------hhccC-------------CCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecC
Q 024385 128 SRLRPKLD-------EFLPQ-------------AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 187 (268)
Q Consensus 128 ~~~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~ 187 (268)
+.+..... .|++. +|+++|+++.+. .++......+...+. .++|+|+|+||+
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~--~~l~~~d~~~~~~l~------~~~piIlV~NK~ 184 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG--HGLKPLDVAFMKAIH------NKVNIVPVIAKA 184 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS--SSCCHHHHHHHHHTC------S-SCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC--CCcchhHHHHHHHhc------cCCCEEEEEECC
Confidence 55555554 55543 346777777643 345555543333332 678999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC----chhHHHHHH
Q 024385 188 DKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE----ISQVEQFIR 263 (268)
Q Consensus 188 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~----i~~l~~~l~ 263 (268)
|+..........+.+...++ ..+++++++||++|. +.++.+.|.
T Consensus 185 Dl~~~~ev~~~k~~i~~~~~--------------------------------~~~i~~~~~Sa~~~~~~e~~~~l~~~i~ 232 (361)
T 2qag_A 185 DTLTLKERERLKKRILDEIE--------------------------------EHNIKIYHLPDAESDEDEDFKEQTRLLK 232 (361)
T ss_dssp SSSCHHHHHHHHHHHHHHTT--------------------------------CC-CCSCCCC---------CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH--------------------------------HCCCCEEeCCCcCCCcchhHHHHHHHHH
Confidence 99754222211112221111 224678999999874 566667776
Q ss_pred hhcC
Q 024385 264 EQVK 267 (268)
Q Consensus 264 ~~~~ 267 (268)
+.+|
T Consensus 233 ~~ip 236 (361)
T 2qag_A 233 ASIP 236 (361)
T ss_dssp HTCS
T ss_pred hcCC
Confidence 6655
No 172
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.77 E-value=2.4e-18 Score=145.12 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=88.2
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCC----------CCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
+.+++|||+|+++++..|..|+++++++|||+|.+ +. +++.+...|+..+..+... .++|+++++||
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~-nr~~es~~~~~~i~~~~~~--~~~~iiL~~NK 243 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNE-NRMEESKALFRTIITYPWF--QNSSVILFLNK 243 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTS-BHHHHHHHHHHHHHTSGGG--TTCEEEEEEEC
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccH-hHHHHHHHHHHHHhhhhcc--CCceEEEEEEC
Confidence 68999999999999999999999999999999665 44 6788888999988876432 68999999999
Q ss_pred CCCCCC------------------CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEe
Q 024385 187 TDKVTA------------------HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEA 248 (268)
Q Consensus 187 ~Dl~~~------------------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~ 248 (268)
+|+... .+.++..+.+......+ -......+.++++
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~--------------------------~~~~~~~i~~~~T 297 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDL--------------------------NPDSDKIIYSHFT 297 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSS--------------------------CTTTTSCEEEEEC
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhh--------------------------cccccCCcEEEEE
Confidence 998642 23333333333222211 0011345788999
Q ss_pred eeccCC-chhHHHHHHhh
Q 024385 249 SGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 249 Sa~~g~-i~~l~~~l~~~ 265 (268)
||++++ |+.+++.+.+.
T Consensus 298 sA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 298 CATDTENIRFVFAAVKDT 315 (327)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred EeecCHHHHHHHHHHHHH
Confidence 999998 88888776653
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.76 E-value=5.2e-18 Score=156.71 Aligned_cols=131 Identities=18% Similarity=0.114 Sum_probs=86.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceee---------c-----cccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM---------E-----PNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+..+|+++|++|+|||||+++|.+.........++ . ...+.......+... .+.+++|||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence 456799999999999999999998433210000000 0 011100011111122 268999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHH
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 204 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~ 204 (268)
.++......+++.+|++++|+|++++. ......++..+.. .++|+++|+||+|+. ....+..+.+.+
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~--~~qt~~~~~~~~~------~~ip~ilv~NKiD~~--~~~~~~~~~l~~ 151 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGV--QVGTERAWTVAER------LGLPRMVVVTKLDKG--GDYYALLEDLRS 151 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCEEEEEECGGGC--CCHHHHHHHHHH
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCccc--chhHHHHHHHHHH------ccCCEEEEecCCchh--hhHHHHHHHHHH
Confidence 999999999999999999999998862 2334444444443 578999999999997 444444444443
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=1.3e-18 Score=138.55 Aligned_cols=160 Identities=18% Similarity=0.242 Sum_probs=94.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC----------ch
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR----------LR 131 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~----------~~ 131 (268)
....+|+++|++|||||||++++.+..+... ..++.+..........++ .+.+|||||+.. ++
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~----~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLAR----TSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQ 96 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-----------------CCEEEEEEET---TEEEEECCCCC------CCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcccc----ccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHH
Confidence 5678999999999999999999998763211 111111111111111222 468999999853 22
Q ss_pred hhHhhhc---cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Q 024385 132 PKLDEFL---PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 208 (268)
Q Consensus 132 ~~~~~~~---~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~ 208 (268)
.....++ +.++++++|+|++.+ .+.. ...+..++.. .+.|+++|+||+|+............+...+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~--~~~~~~~~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~- 167 (210)
T 1pui_A 97 RALGEYLEKRQSLQGLVVLMDIRHP-LKDL--DQQMIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVREAVL- 167 (210)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSC-CCHH--HHHHHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHhhhcccEEEEEEECCCC-Cchh--HHHHHHHHHH-----cCCCeEEEEecccCCCchhHHHHHHHHHHHHH-
Confidence 2333444 578999999999986 3332 1222222322 67899999999998753221111111111111
Q ss_pred HHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 209 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+.++++||+++. +++++++|.+.+
T Consensus 168 -----------------------------~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 168 -----------------------------AFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp -----------------------------GGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------------------hcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 01224578999999998 999999998764
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.76 E-value=1.7e-17 Score=153.71 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=81.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--Cccc-c------cceee-----ccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQ-G------TVTSM-----EPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~-~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|++|+|||||+++|+.. .+.. . ..... ....+.......+.+.+ +.+++|||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence 35679999999999999999999842 1100 0 00000 00000000011122233 68999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
.+|...+..+++.+|++|+|+|++++ ........ +..+.. .++|+++|+||+|+....
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g-~~~~t~~~-~~~~~~------~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQG-VEPQSETV-WRQAEK------YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHH-HHHHHH------TTCCEEEEEECTTSTTCC
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCC-cchhhHHH-HHHHHH------cCCCEEEEEECCCcccCC
Confidence 99999999999999999999999997 44444433 333333 588999999999998643
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.75 E-value=1.3e-17 Score=137.63 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=82.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhcc--
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLP-- 139 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~-- 139 (268)
.+..+|+++|.+|+|||||+|++++..+... +..+.++..........++ ..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~---~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i 108 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV---SPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELI 108 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC---CSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc---CCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHH
Confidence 4678999999999999999999998775211 1111111111122223344 58999999999887655444332
Q ss_pred -------CCCEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCC--CCHHHHHHH
Q 024385 140 -------QAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQ 201 (268)
Q Consensus 140 -------~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~ 201 (268)
.+|++++|+|++.. . +... ..++..+..... .....|+++|+||+|+... ...++..+.
T Consensus 109 ~~~l~~~~~~~il~V~~~d~~-~-~~~~~~~~~~~l~~~~~-~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 109 KGFLVNRTIDVLLYVDRLDVY-A-VDELDKQVVIAITQTFG-KEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp HHHTTTCEECEEEEEEESSCS-C-CCHHHHHHHHHHHHHHC-GGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred HHHHhcCCCCEEEEEEcCCCC-C-CCHHHHHHHHHHHHHhc-hhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 78999999998764 3 3333 344444433211 0123599999999999633 444444433
No 177
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.74 E-value=3.8e-18 Score=145.83 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=62.6
Q ss_pred ceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCC----------CCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEe
Q 024385 115 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 184 (268)
Q Consensus 115 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~ 184 (268)
..+.+.+|||+|+++++..+..|+++++++|+|+|++ +. +++.+...|+..+...... .++|+++|+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~-~s~~~~~~~~~~i~~~~~~--~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQK-NRMMETKELFDWVLKQPCF--EKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTS-BHHHHHHHHHHHHHTCGGG--SSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccch-hHHHHHHHHHHHHHhcccc--CCCeEEEEE
Confidence 4578999999999999999999999999999999998 54 6799999999988875432 689999999
Q ss_pred ecCCCC
Q 024385 185 NKTDKV 190 (268)
Q Consensus 185 nK~Dl~ 190 (268)
||+|+.
T Consensus 258 NK~DL~ 263 (354)
T 2xtz_A 258 NKFDIF 263 (354)
T ss_dssp ECHHHH
T ss_pred ECcchh
Confidence 999985
No 178
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=4.7e-17 Score=151.03 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=86.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC--Ccccc-------cce-----------eeccccceEEeecccccCCceeeEEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQG-------TVT-----------SMEPNEDTFVLHSESTKKGKIKPVHL 121 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~--~~~~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i 121 (268)
.+.++|+++|+.|+|||||+++|+.. .+... ... ++......+.+.. ...++..+.++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~-~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSG-MAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECC-ccccCCceeEEE
Confidence 45789999999999999999999743 11110 000 1111111111110 012234478999
Q ss_pred EeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHH
Q 024385 122 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ 201 (268)
Q Consensus 122 ~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 201 (268)
||||||.+|...+..+++.+|++|+|+|++++ ... .....+..... .++|+++|+||+|+.... ..++.+.
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~-qt~~~~~~~~~------~~ip~ilviNKiD~~~~~-~~~~~~~ 157 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-VQP-QSETVWRQANK------YKVPRIAFVNKMDRMGAN-FLKVVNQ 157 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-CcH-HHHHHHHHHHH------cCCCEEEEEeCCCccccc-HHHHHHH
Confidence 99999999999999999999999999999987 322 23333333332 588999999999997653 3344444
Q ss_pred HHH
Q 024385 202 MEK 204 (268)
Q Consensus 202 l~~ 204 (268)
+..
T Consensus 158 l~~ 160 (704)
T 2rdo_7 158 IKT 160 (704)
T ss_pred HHH
Confidence 443
No 179
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.73 E-value=1.2e-17 Score=141.30 Aligned_cols=72 Identities=28% Similarity=0.355 Sum_probs=64.0
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCC----------CCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
+.+++|||+|++.++..|..|+++++++|||+|++ +. +++.+...|+..+..+... .++|+++++||
T Consensus 161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~-nr~~es~~~~~~i~~~~~~--~~~piiLv~NK 237 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNT-SRLTESIAVFKDIMTNEFL--KGAVKLIFLNK 237 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCS-BHHHHHHHHHHHHHHCGGG--TTSEEEEEEEC
T ss_pred eeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccccccc-chHHHHHHHHHHHhhhhcc--CCCeEEEEEEC
Confidence 68999999999999999999999999999999998 44 6788999999999876432 68999999999
Q ss_pred CCCCC
Q 024385 187 TDKVT 191 (268)
Q Consensus 187 ~Dl~~ 191 (268)
+|+..
T Consensus 238 ~DL~~ 242 (340)
T 4fid_A 238 MDLFE 242 (340)
T ss_dssp HHHHH
T ss_pred chhhh
Confidence 99853
No 180
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.73 E-value=7.6e-18 Score=152.05 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=87.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC--cc------c-----ccceee---ccccceE--EeecccccCCceeeEEEEe
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--TH------Q-----GTVTSM---EPNEDTF--VLHSESTKKGKIKPVHLVD 123 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~--~~------~-----~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~i~D 123 (268)
.+.++|+|+|+.++|||||..+|+... .. . ...... +...+.. .-...+.+.+ +.++|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 467899999999999999999985211 00 0 001100 0000100 0011123344 7899999
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHH
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 203 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~ 203 (268)
||||.+|.....+.++-+|++|+|+|+.++. ..+....+..... .++|+++++||+|....+ .....+.+.
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV--~~qT~~v~~~a~~------~~lp~i~fINK~Dr~~ad-~~~~~~~i~ 177 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGV--EAQTRKLMDVCRM------RATPVMTFVNKMDREALH-PLDVMADIE 177 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBS--CHHHHHHHHHHHH------TTCCEEEEEECTTSCCCC-HHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCc--ccccHHHHHHHHH------hCCceEEEEecccchhcc-hhHhhhhhh
Confidence 9999999999999999999999999999983 2334444444444 789999999999997654 444444444
Q ss_pred H
Q 024385 204 K 204 (268)
Q Consensus 204 ~ 204 (268)
.
T Consensus 178 ~ 178 (548)
T 3vqt_A 178 Q 178 (548)
T ss_dssp H
T ss_pred h
Confidence 3
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=5.3e-17 Score=150.56 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=81.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc--CCcccc-------cceee-----ccccceEEeecccccCCceeeEEEEeCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG-------TVTSM-----EPNEDTFVLHSESTKKGKIKPVHLVDVPGH 127 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 127 (268)
.+.++|+++|++|+|||||+++|+. +.+... ..... .+..+.......+.+.+ +.+++|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 3567999999999999999999985 222100 00000 00111000011122333 68999999999
Q ss_pred CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 128 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 128 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
.++......+++.+|++|+|+|++++ ...... ..+..+.. .++|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g-~~~~~~-~~~~~~~~------~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSG-VEPQTE-TVWRQATT------YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTB-SCHHHH-HHHHHHHH------TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCC-CcHHHH-HHHHHHHH------cCCCEEEEEECCCcccc
Confidence 99999999999999999999999987 444433 33333433 58899999999999864
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=2.4e-17 Score=139.43 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=47.9
Q ss_pred eeEEEEeCCCCCC-------------chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEE
Q 024385 117 KPVHLVDVPGHSR-------------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 183 (268)
Q Consensus 117 ~~~~i~DtpG~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv 183 (268)
..+.+|||||+.+ +......+++.+|++++|+|+++. .........+...+.. .+.|+++|
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~-~~~~~~~~~i~~~~~~-----~~~~~i~v 204 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT-DLANSDALQLAKEVDP-----EGKRTIGV 204 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS-CSTTCSHHHHHHHHCS-----SCSSEEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc-chhhhHHHHHHHHhCC-----CCCcEEEE
Confidence 5799999999864 345566788999999999998442 1111111122222322 57899999
Q ss_pred eecCCCCCCC
Q 024385 184 CNKTDKVTAH 193 (268)
Q Consensus 184 ~nK~Dl~~~~ 193 (268)
+||+|+....
T Consensus 205 ~NK~Dl~~~~ 214 (315)
T 1jwy_B 205 ITKLDLMDKG 214 (315)
T ss_dssp EECTTSSCSS
T ss_pred EcCcccCCcc
Confidence 9999997654
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.71 E-value=4e-17 Score=135.24 Aligned_cols=139 Identities=11% Similarity=0.066 Sum_probs=83.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------H
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-------L 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~ 134 (268)
....+|+++|.+|+|||||+|+|++..+.... ..+.++...........+ ..+.+|||||+.++... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~---~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i 111 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS---PFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNII 111 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC---SSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc---CCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHH
Confidence 35689999999999999999999987752111 111111111111122233 68999999999776422 2
Q ss_pred hhh--ccCCCEEEEEEeCCCCCCCHHHH-HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC--CHHHHHHHHHHHHHH
Q 024385 135 DEF--LPQAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDK 208 (268)
Q Consensus 135 ~~~--~~~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~l~~~l~~ 208 (268)
..+ .+.+|+++||+|++.. . +... ..++..+..... .....|+++|+||+|+.... ..++..+.....+..
T Consensus 112 ~~~~~~~~~d~il~v~~~d~~-~-~~~~~~~~~~~l~~~~~-~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~~ 187 (270)
T 1h65_A 112 KSFLLDKTIDVLLYVDRLDAY-R-VDNLDKLVAKAITDSFG-KGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 187 (270)
T ss_dssp HHHTTTCEECEEEEEEESSCC-C-CCHHHHHHHHHHHHHHC-GGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCEEEEEEeCCCC-c-CCHHHHHHHHHHHHHhC-cccccCEEEEEECcccCCcCCCCHHHHHHHHHHHHHH
Confidence 222 2479999999998763 2 3333 355544443211 01227999999999997543 455554444444443
No 184
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.69 E-value=9.3e-17 Score=151.75 Aligned_cols=145 Identities=17% Similarity=0.254 Sum_probs=98.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc--ccc-----cc-----------eeeccccceEEeecc--------cccCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQG-----TV-----------TSMEPNEDTFVLHSE--------STKKGK 115 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~--~~~-----~~-----------~~~~~~~~~~~~~~~--------~~~~~~ 115 (268)
.+.++|+++|++|+|||||+++|+...- ... .. .|+........+... ...++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4567999999999999999999986411 000 00 011111111112100 012344
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC---C
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---A 192 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~---~ 192 (268)
.+.++|||||||.+|...+..+++.+|++|+|+|++++ .+.+....| ..... .++|+++|+||+|+.. .
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g-~~~qt~~~~-~~~~~------~~~p~ilviNK~D~~~~e~~ 168 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG-VCVQTETVL-RQALG------ERIKPVVVINKVDRALLELQ 168 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB-SCHHHHHHH-HHHHH------TTCEEEEEEECHHHHHHTSC
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHH-HHHHH------cCCCeEEEEECCCcchhhhc
Confidence 57899999999999999999999999999999999997 455554333 33332 6789999999999864 2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhh
Q 024385 193 HTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 193 ~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
.+.+++...+.+.++.++..-.
T Consensus 169 ~~~~e~~~~~~~~~~~i~~~l~ 190 (842)
T 1n0u_A 169 VSKEDLYQTFARTVESVNVIVS 190 (842)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHh
Confidence 3667777777777776655543
No 185
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.69 E-value=7.6e-17 Score=138.60 Aligned_cols=110 Identities=11% Similarity=0.119 Sum_probs=70.7
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
+.+.||||||... .....+..+|++++|+|+... .....+.. . -.+.|+++|+||+|+.......
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~-~~~~~l~~-------~----~~~~p~ivVlNK~Dl~~~~~~~ 236 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTG-DQLQGIKK-------G----VLELADIVVVNKADGEHHKEAR 236 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTT-CTTTTCCT-------T----SGGGCSEEEEECCCGGGHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCC-ccHHHHHH-------h----HhhcCCEEEEECCCCcChhHHH
Confidence 6899999999643 333445889999999998875 32322111 0 1356999999999996543333
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+.+...+.... . . ......+++++||++|+ +++|+++|.+++
T Consensus 237 ~~~~~l~~~l~~~~---~---------------~-------~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 237 LAARELSAAIRLIY---P---------------R-------EALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHHHHHS---T---------------T-------CCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc---c---------------c-------ccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 33333333332210 0 0 00113479999999999 999999998765
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=3.8e-17 Score=142.03 Aligned_cols=89 Identities=25% Similarity=0.288 Sum_probs=49.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCccccc--ceeeccccceEEeecc---------------cccCC-ceeeEEEEeCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSE---------------STKKG-KIKPVHLVDVPG 126 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~DtpG 126 (268)
.+|+++|.+|||||||+|+|++....... .+|..+..+...+... ..+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 47999999999999999999987632111 2344444443222100 01122 136799999999
Q ss_pred CCCc----hhhHh---hhccCCCEEEEEEeCCCC
Q 024385 127 HSRL----RPKLD---EFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 127 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~~ 153 (268)
+.+. +.... .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8642 22222 457899999999999874
No 187
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=133.89 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=61.3
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 196 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 196 (268)
+.+.++||||.... .......+|++++|+|++.+ ........ .+ ...|.++|+||+|+.......
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~-~~~~~i~~---~i--------l~~~~ivVlNK~Dl~~~~~~~ 231 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGG-DELQGIKR---GI--------IEMADLVAVTKSDGDLIVPAR 231 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHHHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcc-hhHHHhHH---HH--------HhcCCEEEEeeecCCCchhHH
Confidence 57899999996432 23446789999999999875 22221111 11 345889999999996421111
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 197 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 197 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+...+.. ... .+ .....+++++||++|+ +++|.++|.+.+
T Consensus 232 ~~~~~l~~~l~~-------~~~-----------------~a-~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 232 RIQAEYVSALKL-------LRK-----------------RS-QVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHTT-------CC-----------------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------cCc-----------------cc-cCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 111112111110 000 00 0112368899999999 999999998764
No 188
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.67 E-value=5.2e-17 Score=136.42 Aligned_cols=163 Identities=15% Similarity=0.240 Sum_probs=76.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC-Ccccccce----eeccccceEEeecccccCCceeeEEEEeCCCC-------CC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG-STHQGTVT----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGH-------SR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~-------~~ 129 (268)
.-.++|+++|++|+|||||+++|.+. .++...+. ...++.............+....+++|||+|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 43322210 00111111111111222344468999999998 55
Q ss_pred chhhHh-------hhccC-------------CCEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 130 LRPKLD-------EFLPQ-------------AAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 130 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
+..... .|++. +++++|+.+++.. ++.... +.+..+ ..+.|+++|+||.|
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~--~Ld~~~~~~l~~l-------~~~~~iilV~~K~D 166 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH--GLKPLDVAFMKAI-------HNKVNIVPVIAKAD 166 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS--SCCHHHHHHHHHH-------TTTSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc--CCCHHHHHHHHHH-------HhcCCEEEEEEeCC
Confidence 555443 44432 3456777665442 233333 222222 15679999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCCchhHHHHHHhh
Q 024385 189 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQ 265 (268)
Q Consensus 189 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~ 265 (268)
+..........+.+.+.++ ..+++++++||++|+++++++++.+.
T Consensus 167 l~~~~e~~~~~~~~~~~~~--------------------------------~~~~~~~e~Sa~~~~v~e~f~~l~~~ 211 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIE--------------------------------EHNIKIYHLPDAESDEDEDFKEQTRL 211 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHH--------------------------------HTTCCCCCCC---------CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH--------------------------------HcCCeEEecCCccccccHHHHHHHHH
Confidence 9753222111222222222 12357899999999888777766654
No 189
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.66 E-value=6.2e-16 Score=134.74 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcc--cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc-------hhhH
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL-------RPKL 134 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~~ 134 (268)
...|+++|++|||||||++++.+.... ....++..+..+... .++ ...+.+||+||+.+. ....
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~------~~~-~~~~~l~DtpGli~~a~~~~~L~~~f 229 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE------VSE-EERFTLADIPGIIEGASEGKGLGLEF 229 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEE------CSS-SCEEEEEECCCCCCCGGGSCCSCHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEE------ecC-cceEEEEeccccccchhhhhhhhHHH
Confidence 457999999999999999999876431 111222333332222 222 147899999998542 1122
Q ss_pred hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 024385 135 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 135 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 214 (268)
...+..++.+++|+|++ . ..+..+..+..++..... .-...|.++|+||+|+... +..+.+.+.++
T Consensus 230 l~~~era~~lL~vvDls-~-~~~~~ls~g~~el~~la~-aL~~~P~ILVlNKlDl~~~----~~~~~l~~~l~------- 295 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAA-D-EPLKTLETLRKEVGAYDP-ALLRRPSLVALNKVDLLEE----EAVKALADALA------- 295 (416)
T ss_dssp HHHHTSSSEEEEEEETT-S-CHHHHHHHHHHHHHHHCH-HHHHSCEEEEEECCTTSCH----HHHHHHHHHHH-------
T ss_pred HHHHHHHHhhhEEeCCc-c-CCHHHHHHHHHHHHHHhH-HhhcCCEEEEEECCChhhH----HHHHHHHHHHH-------
Confidence 33456799999999998 3 457777666666554321 0136799999999999753 12222222111
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
....+++++||++++ +++|+++|.+.+
T Consensus 296 -------------------------~~g~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 296 -------------------------REGLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp -------------------------TTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------------hcCCeEEEEECCCccCHHHHHHHHHHHH
Confidence 112468999999998 999999998765
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.65 E-value=7.8e-17 Score=138.49 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=93.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcc-ccc-ceeeccccceEE-------------------ee-------------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-QGT-VTSMEPNEDTFV-------------------LH------------- 107 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~-~~~-~~~~~~~~~~~~-------------------~~------------- 107 (268)
...++|+++|.+|||||||+|+|++..+. ... ..+..|+..... ..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999998763 111 222222210000 00
Q ss_pred ----cc-------cccC-CceeeEEEEeCCCCCC-------------chhhHhhhccCCCEE-EEEEeCCCCCCCHHHHH
Q 024385 108 ----SE-------STKK-GKIKPVHLVDVPGHSR-------------LRPKLDEFLPQAAGI-VFVVDALEFLPNCSAAS 161 (268)
Q Consensus 108 ----~~-------~~~~-~~~~~~~i~DtpG~~~-------------~~~~~~~~~~~~d~i-i~v~d~~~~~~~~~~~~ 161 (268)
.. +.+. .....+.+|||||..+ +......|++.++.+ ++|+|++.... -....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~-~~~~~ 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-NSDAL 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG-GCHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc-hhHHH
Confidence 00 0000 0125799999999643 334566777666654 55666655311 11111
Q ss_pred HHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCc
Q 024385 162 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHN 241 (268)
Q Consensus 162 ~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~ 241 (268)
.++..+ . ..+.|+++|+||+|+...... ..+.++. .. +....+
T Consensus 188 ~i~~~~-~-----~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~------------------~~-----------~~l~~~ 230 (353)
T 2x2e_A 188 KVAKEV-D-----PQGQRTIGVITKLDLMDEGTD--ARDVLEN------------------KL-----------LPLRRG 230 (353)
T ss_dssp HHHHHH-C-----TTCTTEEEEEECGGGSCTTCC--CHHHHTT------------------CS-----------SCCTTC
T ss_pred HHHHHh-C-----cCCCceEEEeccccccCcchh--HHHHHhC------------------Cc-----------ccccCC
Confidence 222222 2 267899999999999764321 1111100 00 000012
Q ss_pred eeEEEEeeeccCC-chhHHHHHHh
Q 024385 242 KVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 242 ~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
-..++++||++|+ ++++++++.+
T Consensus 231 ~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 231 YIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp EEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ceEEEeCCcccccccccHHHHHHH
Confidence 2468899999998 9999888865
No 191
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.65 E-value=4.4e-16 Score=133.08 Aligned_cols=194 Identities=16% Similarity=0.180 Sum_probs=104.6
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHcCCcc---cccceee
Q 024385 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTVTSM 97 (268)
Q Consensus 21 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~~~~~---~~~~~~~ 97 (268)
.+.+.|.++++........+.... .+..+ .+...+...++++|++|+|||||++.|.+.-.. .-.+.+.
T Consensus 21 r~~l~~~i~~ie~~~~~~~~~~~~--~~~~l------~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 21 RATLAQAMTLVESRHPRHQALSTQ--LLDAI------MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHH--HHHHH------GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHhhhhHhhcCCchhhhHHHH--HHHhC------CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 466777777777666554433211 01100 112356678999999999999999998631100 0011111
Q ss_pred ccccce---------------------EE--eec----------------ccccCCceeeEEEEeCCCCCCchhhHhhhc
Q 024385 98 EPNEDT---------------------FV--LHS----------------ESTKKGKIKPVHLVDVPGHSRLRPKLDEFL 138 (268)
Q Consensus 98 ~~~~~~---------------------~~--~~~----------------~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 138 (268)
.+.... +. ... .....+ +.+.++||||..+... ...
T Consensus 93 d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~--~~i~liDTpG~~~~~~---~~~ 167 (341)
T 2p67_A 93 DPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAG--YDVVIVETVGVGQSET---EVA 167 (341)
T ss_dssp CCC---------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTT--CSEEEEEEECCTTHHH---HHH
T ss_pred cCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHHHHHHHHHHhhccC--CCEEEEeCCCccchHH---HHH
Confidence 111100 00 000 001223 6899999999875433 346
Q ss_pred cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc
Q 024385 139 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 218 (268)
Q Consensus 139 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 218 (268)
+.+|++++|+|++.+ ..+..+.. .. .+.|.++|+||+|+..........+.+.+.+..+
T Consensus 168 ~~aD~vl~Vvd~~~~-~~~~~l~~---~~--------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~--------- 226 (341)
T 2p67_A 168 RMVDCFISLQIAGGG-DDLQGIKK---GL--------MEVADLIVINKDDGDNHTNVAIARHMYESALHIL--------- 226 (341)
T ss_dssp TTCSEEEEEECC-------CCCCH---HH--------HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHS---------
T ss_pred HhCCEEEEEEeCCcc-HHHHHHHH---hh--------hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhc---------
Confidence 889999999999765 22111100 00 2468899999999965322222212222211110
Q ss_pred ccccCcccCCCCCCCeeeccC--CceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 219 ADVTNDFTLGIPGQAFSFSQC--HNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~f~f~~~--~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
... ....+++++||++|+ +++|.++|.+.+
T Consensus 227 ------------------~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 227 ------------------RRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp ------------------CCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ------------------cccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 000 002378999999999 999999998764
No 192
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.65 E-value=1.4e-16 Score=146.51 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc--CCccc------c-cceeecc-----ccceEEeecccccCCceeeEEEEeCCCCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD--GSTHQ------G-TVTSMEP-----NEDTFVLHSESTKKGKIKPVHLVDVPGHS 128 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~--~~~~~------~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 128 (268)
+.++|+|+|+.++|||||..+|+. +.... . +.....+ +.+...-...+.+.+ +.++|+|||||.
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~ 78 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHM 78 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSS
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcH
Confidence 357899999999999999999853 11110 0 0000000 111111112233444 789999999999
Q ss_pred CchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC
Q 024385 129 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 194 (268)
Q Consensus 129 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 194 (268)
+|.....+.++-+|++|+|+|+.++... +....+..... .++|.++++||+|....+.
T Consensus 79 DF~~Ev~raL~~~DgavlVVDa~~GV~~--qT~~v~~~a~~------~~lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 79 DFLAEVYRSLSVLDGAILLISAKDGVQA--QTRILFHALRK------MGIPTIFFINKIDQNGIDL 136 (638)
T ss_dssp STHHHHHHHHTTCSEEECCEESSCTTCS--HHHHHHHHHHH------HTCSCEECCEECCSSSCCS
T ss_pred HHHHHHHHHHHHhCEEEEEEeCCCCCcH--HHHHHHHHHHH------cCCCeEEEEeccccccCCH
Confidence 9999999999999999999999998432 33344444444 5889999999999977654
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.64 E-value=5e-16 Score=133.84 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=49.8
Q ss_pred eeEEEEeCCCCCCc-------------hhhHhhhccCCCEEEEEEeCCCCCCCH-HHHHHHHHHHHhcCCccCCCCcEEE
Q 024385 117 KPVHLVDVPGHSRL-------------RPKLDEFLPQAAGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLI 182 (268)
Q Consensus 117 ~~~~i~DtpG~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~piiv 182 (268)
..+.+|||||..++ ......|++.+|++|+|+|+.+. ... .....++..+ . ..+.|+++
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~-~~~~~~~~~l~~~~-~-----~~~~~~i~ 208 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ-DLATSDAIKISREV-D-----PSGDRTFG 208 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS-CGGGCHHHHHHHHS-C-----TTCTTEEE
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC-CcCCHHHHHHHHHh-c-----ccCCCEEE
Confidence 46899999998876 55677899999999999998664 222 2222222221 1 25789999
Q ss_pred EeecCCCCCCC
Q 024385 183 CCNKTDKVTAH 193 (268)
Q Consensus 183 v~nK~Dl~~~~ 193 (268)
|+||+|+....
T Consensus 209 V~nK~Dl~~~~ 219 (360)
T 3t34_A 209 VLTKIDLMDKG 219 (360)
T ss_dssp EEECGGGCCTT
T ss_pred EEeCCccCCCc
Confidence 99999997643
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=9e-16 Score=138.69 Aligned_cols=122 Identities=22% Similarity=0.320 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEE-e-ecc--------------------cc---------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFV-L-HSE--------------------ST--------- 111 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~--------------------~~--------- 111 (268)
...+|+++|.+|+|||||+|+|++..+... ..+..+++.... + ... +.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~-~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGS-RVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSC-CCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccC-ccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 457999999999999999999999876310 111122221110 0 000 00
Q ss_pred -----cCCc-eeeEEEEeCCCCCC-----------chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc
Q 024385 112 -----KKGK-IKPVHLVDVPGHSR-----------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV 174 (268)
Q Consensus 112 -----~~~~-~~~~~i~DtpG~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (268)
..+. ...+.+|||||+.+ +......++..+|++|+|+|+++. ........++..+..
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~-~~~~~~~~~l~~l~~----- 216 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL-EISDEFSEAIGALRG----- 216 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC-CCCHHHHHHHHHTTT-----
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC-CCCHHHHHHHHHHHh-----
Confidence 0000 02689999999875 445667788999999999999884 334555555544432
Q ss_pred CCCCcEEEEeecCCCCCC
Q 024385 175 KKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 175 ~~~~piivv~nK~Dl~~~ 192 (268)
.+.|+++|+||+|+...
T Consensus 217 -~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVET 233 (550)
T ss_dssp -CGGGEEEEEECGGGSCH
T ss_pred -cCCCEEEEEECCCccCH
Confidence 46899999999999764
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.62 E-value=2.1e-15 Score=120.85 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=91.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceee--cccc----------c--eEEeecc--ccc----------CCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM--EPNE----------D--TFVLHSE--STK----------KGK 115 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~--~~~~----------~--~~~~~~~--~~~----------~~~ 115 (268)
.+.++++++|.+|||||||+++|............+ .+.. + ....... ... ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 467899999999999999999998652111111111 1110 0 0001100 000 111
Q ss_pred eeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC--C
Q 024385 116 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--H 193 (268)
Q Consensus 116 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~--~ 193 (268)
.+.+.+|||+|+.... ..+....+.+++|+|+... .. ....+. .. .+.|+++|+||+|+... .
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~-~~--~~~~~~-~~--------~~~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEG-DD--VVEKHP-EI--------FRVADLIVINKVALAEAVGA 172 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGC-TT--HHHHCH-HH--------HHTCSEEEEECGGGHHHHTC
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCc-ch--hhhhhh-hh--------hhcCCEEEEecccCCcchhh
Confidence 2578999999962111 1122357889999999886 21 111111 11 35789999999998643 2
Q ss_pred CHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 194 TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 194 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+++.+.+. .+ ...++++++||++|+ +++++++|.+.+
T Consensus 173 ~~~~~~~~~~----~~------------------------------~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 173 DVEKMKADAK----LI------------------------------NPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp CHHHHHHHHH----HH------------------------------CTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----Hh------------------------------CCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 3333333222 11 123579999999998 999999998765
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=133.26 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccccccee----eccccceEEeecccccCCceeeEEEEeCCCCCCch-------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS----MEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR------- 131 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~------- 131 (268)
-.++|+++|++|||||||++.|.+..+......+ ..++.............+....+++|||+|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4568999999999999999999987652111100 11111111122222223433578999999987542
Q ss_pred hh-------H-----------hhhccCC--CEEEEEEeCCCCCCCHHHHH-HHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 132 PK-------L-----------DEFLPQA--AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 132 ~~-------~-----------~~~~~~~--d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
.. . ..++..+ ++++|+++++. .++.... .++..+. .++|+|+|+||+|+.
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~--~~L~~~d~~~lk~L~-------~~v~iIlVinK~Dll 180 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG--HGLKPLDIEFMKRLH-------EKVNIIPLIAKADTL 180 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C--CSCCHHHHHHHHHHT-------TTSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc--cCCCHHHHHHHHHHh-------ccCcEEEEEEcccCc
Confidence 11 1 1223333 45666666542 1244443 4554442 478999999999997
Q ss_pred CCCCHHHHHHHHHHHHH
Q 024385 191 TAHTKEFIRKQMEKEID 207 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~ 207 (268)
.........+.+.+.+.
T Consensus 181 ~~~ev~~~k~~i~~~~~ 197 (418)
T 2qag_C 181 TPEECQQFKKQIMKEIQ 197 (418)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 54333333334444333
No 197
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.61 E-value=2.6e-15 Score=139.76 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC--------cccc-cce-----------eeccccceEEeecccccCCceeeEEEE
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--------THQG-TVT-----------SMEPNEDTFVLHSESTKKGKIKPVHLV 122 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~--------~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~ 122 (268)
+.++|+|+|+.++|||||..+|+... .... ... |+......+.++. .....+.+.++|+
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~-~~~~~~~~~iNlI 90 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKG-SRGQYDNYRVNVI 90 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECC-TTSCSCCEEEEEE
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEecc-CcCCCCCEEEEEE
Confidence 45799999999999999999985221 1100 000 1111111111111 0111224789999
Q ss_pred eCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 123 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 123 DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
|||||.+|.......++-+|++|+|+|+.++. ..+....+..... .++|.++|+||+|....+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV--~~qT~~v~~~a~~------~~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGV--EPQSETVWRQANK------YGVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCS--CHHHHHHHHHHHH------HTCCEEEEEECSSSTTCC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEccccccCcc
Confidence 99999999999999999999999999999983 3344455555554 689999999999997643
No 198
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.60 E-value=3.3e-15 Score=128.16 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=99.9
Q ss_pred CCCcHHHH--HHHHHcCCccccc---ceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEE
Q 024385 73 SGSGKTVL--FYQLRDGSTHQGT---VTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 147 (268)
Q Consensus 73 ~~~GKSsL--i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v 147 (268)
+.+.|.-| +.|+....+..+. .....++.+.... .+..++ +.+.+|||+|++.++..|..|++.++++|||
T Consensus 156 ~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~--~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv 231 (362)
T 1zcb_A 156 GESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEY--DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL 231 (362)
T ss_dssp CTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEE--EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred cccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEE--EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEE
Confidence 67777766 6777766542211 1112233332221 122333 7899999999999999999999999999999
Q ss_pred EeCCCC---------CCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC------------------CCHHHHHH
Q 024385 148 VDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA------------------HTKEFIRK 200 (268)
Q Consensus 148 ~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~------------------~~~~~~~~ 200 (268)
+|+++. .+++.+...|+..+...... .++|+++|+||+|+... .+.++..+
T Consensus 232 ~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~--~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~ 309 (362)
T 1zcb_A 232 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF--SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK 309 (362)
T ss_dssp EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG--TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHH
T ss_pred EECccccccccccccccHHHHHHHHHHHHhcchhh--CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHH
Confidence 999982 15789999999998875432 68999999999998531 22233322
Q ss_pred HHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccC--CceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 201 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQC--HNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~--~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.+......+ ... ...+.+++|||++|+ |+++++++.+.
T Consensus 310 ~~~~~f~~l---------------------------~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 310 FLVECFRGK---------------------------RRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp HHHHHHHTT---------------------------CSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---------------------------hcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 222111110 000 234689999999998 99999988764
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.57 E-value=2.8e-15 Score=123.36 Aligned_cols=139 Identities=22% Similarity=0.191 Sum_probs=70.4
Q ss_pred eeEEEEeCCCCCCchhh------HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK------LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~------~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.+|||||+.+.... ...++.. +++++++|+... ................. ...+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~-~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEIL-KKPNDYCFVRFFALLID--LRLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGC-CSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhh-cCHHHHHHHHHHHHHHh--cccCCCeEEEEeccccc
Confidence 57999999998764322 1135566 899999998765 23333222211111100 01478999999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhcc-ccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 191 TAHTKEFIRKQMEKEIDKLRASRSAV-SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 191 ~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.....+++.+.+.. ++.+....... ...+... +.+... ........+++++||++|+ +++|+++|.+.+
T Consensus 185 ~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~-~~l~~~-----~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 185 SEEEKERHRKYFED-IDYLTARLKLDPSMQGLMA-YKMCSM-----MTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp CHHHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHH-HHHHHH-----HHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhC-hHHHHHHHhccccccchhH-hHHHHH-----HHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 54322222222210 11100000000 0000000 000000 0000122368999999998 999999998765
No 200
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.57 E-value=6.2e-15 Score=114.84 Aligned_cols=108 Identities=11% Similarity=0.139 Sum_probs=77.4
Q ss_pred CCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHH---HHHHhcCCccCCCCcEEEEeecC-CCCCCCCHHHHHH
Q 024385 125 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYL---YDILTNSTVVKKKIPVLICCNKT-DKVTAHTKEFIRK 200 (268)
Q Consensus 125 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~piivv~nK~-Dl~~~~~~~~~~~ 200 (268)
+|+..+++.|.+|++++|++|||+|+++. +.++ ....+ ..++.+.. ...++|++|++||. |+..+.+..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~-~R~e-ak~EL~eL~~mL~ee~-~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAH-KRHE-WQDEFSHIMAMTDPAF-GSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTT-CCCC-HHHHHHHHHHHSCTTS-SCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccH-hHHH-HHHHHHHHHHHhcchh-hhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 48999999999999999999999999987 4443 66666 34444321 01588999999995 7888888887776
Q ss_pred HHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 201 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
.+.- ..+...+.+.+|||++|+ +.+.++||.+.++
T Consensus 187 ~L~L--------------------------------~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHL--------------------------------NLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTG--------------------------------GGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCC--------------------------------cCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 6541 112356889999999999 9999999998764
No 201
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.55 E-value=2.6e-15 Score=126.15 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=95.4
Q ss_pred HHHHHHHcCCcc-cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCH
Q 024385 79 VLFYQLRDGSTH-QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNC 157 (268)
Q Consensus 79 sLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~ 157 (268)
+|+.++..+.|. ..+. |+++.+. ......++ .+.+||| +++++..+..|++++|++|+|+|++++..++
T Consensus 32 sl~~~~~~~~f~~~~~~----pTiGd~~-~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~ 101 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLK----IYVGDRV-EYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETST 101 (301)
T ss_dssp CEEEEEECGGGTTTTCC----CCTTCEE-EEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCH
T ss_pred cEEEEEEcccccccCCC----CCCccEE-EEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCH
Confidence 577788887775 4333 3344222 22222222 6899999 9999999999999999999999999973378
Q ss_pred HHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeec
Q 024385 158 SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFS 237 (268)
Q Consensus 158 ~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~ 237 (268)
..+..|+..+.. .++|+++|+||+|+...... +...+..+.+ .
T Consensus 102 ~~l~~~l~~~~~------~~~piilv~NK~DL~~~~~v----~~~~~~~~~~---------------------------~ 144 (301)
T 1u0l_A 102 YIIDKFLVLAEK------NELETVMVINKMDLYDEDDL----RKVRELEEIY---------------------------S 144 (301)
T ss_dssp HHHHHHHHHHHH------TTCEEEEEECCGGGCCHHHH----HHHHHHHHHH---------------------------T
T ss_pred HHHHHHHHHHHH------CCCCEEEEEeHHHcCCchhH----HHHHHHHHHH---------------------------h
Confidence 888888876644 57899999999999753221 1111111111 1
Q ss_pred cCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 238 QCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 238 ~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
. . +++++|||++|. ++++++++..
T Consensus 145 ~--~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 145 G--L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp T--T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred h--h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 1 1 479999999998 9999998764
No 202
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.55 E-value=1.2e-14 Score=125.80 Aligned_cols=71 Identities=25% Similarity=0.323 Sum_probs=64.5
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCC----------CCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeec
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALE----------FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 186 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK 186 (268)
+.+.+|||+|++.++..+..|++.++++|||||+++ . +++.....|+..+..... ..++|++||+||
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~-ns~~e~~~~~~~i~~~~~--~~~~piiLvgNK 293 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT-NRLQEALNLFKSIWNNRW--LRTISVILFLNK 293 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCS-BHHHHHHHHHHHHHTCTT--CSSCCEEEEEEC
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECccccccccccccc-chHHHHHHHHHHHHhccc--CCCCeEEEEEEC
Confidence 789999999999999999999999999999999998 5 789999999999987643 268999999999
Q ss_pred CCCC
Q 024385 187 TDKV 190 (268)
Q Consensus 187 ~Dl~ 190 (268)
+|+.
T Consensus 294 ~DL~ 297 (402)
T 1azs_C 294 QDLL 297 (402)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9984
No 203
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.53 E-value=5.3e-14 Score=120.10 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=59.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCccccc--ceeeccccceEEeeccc------ccCC---ceeeEEEEeCCCCCCchh
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSES------TKKG---KIKPVHLVDVPGHSRLRP 132 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~---~~~~~~i~DtpG~~~~~~ 132 (268)
..+|+++|.+|||||||+|+|++..+.... .+|..|+.+...++... .... ....+.+|||||+.++.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987642221 23556665544432110 0000 014689999999987642
Q ss_pred -------hHhhhccCCCEEEEEEeCCC
Q 024385 133 -------KLDEFLPQAAGIVFVVDALE 152 (268)
Q Consensus 133 -------~~~~~~~~~d~ii~v~d~~~ 152 (268)
....+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23346799999999999987
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.52 E-value=2.5e-14 Score=132.32 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=95.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc-cccc-ceeeccccce-------EE---------------------------
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST-HQGT-VTSMEPNEDT-------FV--------------------------- 105 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~-~~~~-~~~~~~~~~~-------~~--------------------------- 105 (268)
...++|+++|.+++|||||+|+|++..+ +.+. ..|..|..-. +.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4568999999999999999999999876 2221 1111000000 00
Q ss_pred -----------eecccccCCceeeEEEEeCCCCCCc-------------hhhHhhhc-cCCCEEEEEEeCCCCCCCHHHH
Q 024385 106 -----------LHSESTKKGKIKPVHLVDVPGHSRL-------------RPKLDEFL-PQAAGIVFVVDALEFLPNCSAA 160 (268)
Q Consensus 106 -----------~~~~~~~~~~~~~~~i~DtpG~~~~-------------~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~ 160 (268)
....+...+ ...+.++||||.... ......|+ ..+|++++|+|++.... -...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-NSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-SCHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-hhHH
Confidence 000000001 135889999997541 12344555 47899999999987522 1222
Q ss_pred HHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCC
Q 024385 161 SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCH 240 (268)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~ 240 (268)
...+..+ . ..+.|+++|+||+|+....... . .+.. + .. +....
T Consensus 207 l~ll~~L-~-----~~g~pvIlVlNKiDlv~~~~~~--~-~il~--~---------------~~-----------~~l~l 249 (772)
T 3zvr_A 207 LKIAKEV-D-----PQGQRTIGVITKLDLMDEGTDA--R-DVLE--N---------------KL-----------LPLRR 249 (772)
T ss_dssp HHHHHHH-C-----TTCSSEEEEEECTTSSCTTCCS--H-HHHT--T---------------CS-----------SCCSS
T ss_pred HHHHHHH-H-----hcCCCEEEEEeCcccCCcchhh--H-HHHH--H---------------Hh-----------hhhhc
Confidence 2223222 2 2578999999999998643321 0 0000 0 00 00001
Q ss_pred ceeEEEEeeeccCC-chhHHHHHHh
Q 024385 241 NKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 241 ~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
+..+++++||++|+ +++|.+.|.+
T Consensus 250 g~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 250 GYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CEEECCCCCCEESSSSEEHHHHHHH
T ss_pred cCCceEEecccccccchhHHHHHHH
Confidence 23478889999998 9999998876
No 205
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.47 E-value=1.7e-13 Score=117.59 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=59.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCccc--ccceeeccccceEEeecc--------cccCC-----ceeeEEEEeCCCCCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFVLHSE--------STKKG-----KIKPVHLVDVPGHSR 129 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~~~i~DtpG~~~ 129 (268)
.+|+++|.+|||||||+|+|++..... ...+|+.|+.+...++.. ....+ ....+.+|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 579999999999999999998754211 123356666554433210 00111 124799999999876
Q ss_pred ch-------hhHhhhccCCCEEEEEEeCCC
Q 024385 130 LR-------PKLDEFLPQAAGIVFVVDALE 152 (268)
Q Consensus 130 ~~-------~~~~~~~~~~d~ii~v~d~~~ 152 (268)
.. .....+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 234456899999999999986
No 206
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=112.71 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=81.2
Q ss_pred CCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHH---HHHhcCCccCCCCcEEEEeec-CCCCCCCCHHHHH
Q 024385 124 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLY---DILTNSTVVKKKIPVLICCNK-TDKVTAHTKEFIR 199 (268)
Q Consensus 124 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~piivv~nK-~Dl~~~~~~~~~~ 199 (268)
.+||..+++.|.+|++++|++|||||+++. +.++ ....+. .++.+.. ...++|++|++|| .|+..+.+..++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDr-eRle-ak~EL~eL~~mL~e~~-~l~~apLLVfANKkQDlp~Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAH-KRHE-WQDEFSHIMAMTDPAF-GSSGRPLLVLSCISQGDVKRMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTT-CCCC-HHHHHHHHHHHHCHHH-HCTTCCEEEEEEESSTTSCBCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcH-hHHH-HHHHHHHHHHHhcchh-hcCCCeEEEEeCCcccccCCCCHHHHH
Confidence 468999999999999999999999999997 4344 444433 4443211 0168999999997 6998888887776
Q ss_pred HHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhcC
Q 024385 200 KQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 267 (268)
+.+.- ..+...+.+..|||+||+ +.+.++||.+.++
T Consensus 271 e~L~L--------------------------------~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELHL--------------------------------NLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTTG--------------------------------GGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcCC--------------------------------ccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 66541 112356889999999999 9999999998875
No 207
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.4e-13 Score=118.07 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=76.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch-------hhHhhh
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------PKLDEF 137 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------~~~~~~ 137 (268)
.+|+++|.||||||||+|+|++.... +..+ |.++..+....+.+.+ .+++++||||..+-. ......
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~---v~~~-pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESE---AAEY-EFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCC---GGGT-CSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCc---ccCC-CCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 47999999999999999999986542 2222 3334444444455556 689999999975432 223356
Q ss_pred ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 138 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 138 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
++.||++++|+|++++ .........++ ......-...|.++++||.|..
T Consensus 147 i~~ad~il~vvD~~~p---~~~~~~i~~EL-~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKP---LHHKQIIEKEL-EGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHCSEEEEEEETTSH---HHHHHHHHHHH-HHTTEEETCCCCCEEEEECSSS
T ss_pred HHhcCccccccccCcc---HHHHHHHHHHH-HHhhHhhccCChhhhhhHhhhh
Confidence 6889999999999986 33332222222 2211112567889999999974
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.44 E-value=8e-13 Score=106.10 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=87.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccc--------------eEEeecc--cc------------cC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNED--------------TFVLHSE--ST------------KK 113 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~~--~~------------~~ 113 (268)
.+.++|+++|.+|||||||++++....+......++....+ ....... .. ..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 46789999999999999999999876443323332221111 1111100 00 00
Q ss_pred CceeeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC-
Q 024385 114 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA- 192 (268)
Q Consensus 114 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~- 192 (268)
.....+.++|++|..... ..+-...+.++.++|+........... .. .+.|.++|+||+|+...
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~~~----~~--------~~~~~iiv~NK~Dl~~~~ 180 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEKHP----GI--------MKTADLIVINKIDLADAV 180 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTTCH----HH--------HTTCSEEEEECGGGHHHH
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhhhh----hH--------hhcCCEEEEeccccCchh
Confidence 011357788888842211 112234556778888644311111111 11 24688999999998643
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 193 -HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 193 -~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...++..+.+ +.+ ....+++++||++|+ +++++++|.+.+
T Consensus 181 ~~~~~~~~~~~----~~~------------------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 181 GADIKKMENDA----KRI------------------------------NPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TCCHHHHHHHH----HHH------------------------------CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHh------------------------------CCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 1232222222 111 123579999999998 999999998754
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.44 E-value=3.8e-13 Score=114.58 Aligned_cols=193 Identities=15% Similarity=0.172 Sum_probs=100.4
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcCCCCcHHHHHHHHHc------CCcccccc
Q 024385 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRD------GSTHQGTV 94 (268)
Q Consensus 21 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKSsLi~~l~~------~~~~~~~~ 94 (268)
.+.+.|..+++...+....|.... .+.. -.+...+...++++|++|||||||++.+.+ ++. .+
T Consensus 20 r~~l~r~i~~ie~~~~~~~~~~~~--~l~~------i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v---~i 88 (337)
T 2qm8_A 20 RAALARAITLAESRRADHRAAVRD--LIDA------VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV---AV 88 (337)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHH--HHHH------HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE---EE
T ss_pred HHHHHHHHHHHeeCCcccccChHH--HHHh------CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE---EE
Confidence 355566656666555555443210 1111 112235677899999999999999999973 332 11
Q ss_pred eeeccccc---------------------eEEeec------------------ccccCCceeeEEEEeCCCCCCchhhHh
Q 024385 95 TSMEPNED---------------------TFVLHS------------------ESTKKGKIKPVHLVDVPGHSRLRPKLD 135 (268)
Q Consensus 95 ~~~~~~~~---------------------~~~~~~------------------~~~~~~~~~~~~i~DtpG~~~~~~~~~ 135 (268)
.+..+... .+.... .....+ +.+.++||||...-..
T Consensus 89 ~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~--~~~iliDT~Gi~~~~~--- 163 (337)
T 2qm8_A 89 LAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAG--FDVILVETVGVGQSET--- 163 (337)
T ss_dssp EEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTT--CCEEEEEECSSSSCHH---
T ss_pred EEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCC--CCEEEEECCCCCcchh---
Confidence 11111110 000000 011123 6899999999865322
Q ss_pred hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCC-HHHHHHHHHHHHHHHHHhhh
Q 024385 136 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRS 214 (268)
Q Consensus 136 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~~ 214 (268)
.....+|.+++|+|+..+ .....+...+ ...|.++++||+|+..... .....+.+...+ .
T Consensus 164 ~v~~~~d~vl~v~d~~~~-~~~~~i~~~i-----------~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~-------~ 224 (337)
T 2qm8_A 164 AVADLTDFFLVLMLPGAG-DELQGIKKGI-----------FELADMIAVNKADDGDGERRASAAASEYRAAL-------H 224 (337)
T ss_dssp HHHTTSSEEEEEECSCC-------CCTTH-----------HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHH-------T
T ss_pred hHHhhCCEEEEEEcCCCc-ccHHHHHHHH-----------hccccEEEEEchhccCchhHHHHHHHHHHHHH-------H
Confidence 234689999999998754 2111111111 1346678889999753211 111111111100 0
Q ss_pred ccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 215 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.... ... ....+++.+||++|+ +++|.++|.+..
T Consensus 225 l~~~-----------------~~~-~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 225 ILTP-----------------PSA-TWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TBCC-----------------SBT-TBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hccc-----------------ccc-CCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0000 000 001357889999999 999999988753
No 210
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=1e-11 Score=107.96 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=62.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCch--------------
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-------------- 131 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-------------- 131 (268)
+++++|++|+|||||+|.|.+..+.........+..............+....++++|++|.....
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~ 123 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID 123 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH
Confidence 499999999999999999988754221221112221111111111112222368999999875421
Q ss_pred hhHhhhc-------------cC--CCE-EEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC
Q 024385 132 PKLDEFL-------------PQ--AAG-IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 193 (268)
Q Consensus 132 ~~~~~~~-------------~~--~d~-ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 193 (268)
..+..++ .. +|+ ++|++|+..+ +......+...+. .++|+|+|.||+|.....
T Consensus 124 ~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~---l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 124 AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS---LKSLDLVTMKKLD------SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC------CHHHHHHHHHTC------SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC---CCHHHHHHHHHHh------hCCCEEEEEcchhccchH
Confidence 1111111 11 233 5566666654 3333333333332 578999999999987543
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.20 E-value=1.7e-11 Score=105.62 Aligned_cols=92 Identities=22% Similarity=0.314 Sum_probs=53.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc--cceeeccccceEEeecc-cc-----cC---CceeeEEEEeCCCCCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSE-ST-----KK---GKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~-----~~---~~~~~~~i~DtpG~~~~ 130 (268)
....+|+++|.+|||||||+|+|++..+... ..+|..|+.+...++.. +. .. .....+.+|||||+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 4568999999999999999999998765221 22345555554443221 00 00 00135899999998875
Q ss_pred hh-------hHhhhccCCCEEEEEEeCCCC
Q 024385 131 RP-------KLDEFLPQAAGIVFVVDALEF 153 (268)
Q Consensus 131 ~~-------~~~~~~~~~d~ii~v~d~~~~ 153 (268)
.+ .+..+++.+|++++|+|+++.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 44 466788999999999999864
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.15 E-value=6e-11 Score=99.48 Aligned_cols=110 Identities=16% Similarity=0.075 Sum_probs=77.6
Q ss_pred eeeEEEEe-CCC-----CCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCC
Q 024385 116 IKPVHLVD-VPG-----HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 189 (268)
Q Consensus 116 ~~~~~i~D-tpG-----~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl 189 (268)
.+.+.++| +.| ++++....+.+++++|++++|+|++++..++..+..|+..+.. .++|+++|+||+|+
T Consensus 49 ~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~------~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 49 YVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY------FKVEPVIVFNKIDL 122 (302)
T ss_dssp EEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH------TTCEEEEEECCGGG
T ss_pred EEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh------CCCCEEEEEEcccC
Confidence 35556665 323 7777888888999999999999999874478888888876543 68999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHh
Q 024385 190 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 264 (268)
Q Consensus 190 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 264 (268)
.+....+.. +......+ ..+++++++||++|+ +++|++++..
T Consensus 123 ~~~~~v~~~-~~~~~~~~--------------------------------~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 123 LNEEEKKEL-ERWISIYR--------------------------------DAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp CCHHHHHHH-HHHHHHHH--------------------------------HTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred CCccccHHH-HHHHHHHH--------------------------------HCCCeEEEEECCCCCCHHHHHhhccC
Confidence 753211101 11111111 112479999999998 9999988754
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.00 E-value=1.7e-09 Score=89.04 Aligned_cols=135 Identities=16% Similarity=0.240 Sum_probs=69.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccce-----eeccccceEEeecccccCCceeeEEEEeCCCCCCchh------h
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT-----SMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRP------K 133 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~------~ 133 (268)
++++++|++|+|||||+|.|.+...+..... ..................+....++++|++|...... .
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 5799999999999999999986433211100 0001110011111111122223689999998543110 1
Q ss_pred Hh------------h----------hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 134 LD------------E----------FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 134 ~~------------~----------~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
.. . .+..+++.++++|.... .+......+...+. ...++++|.||+|...
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~--gL~~lD~~~l~~L~------~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH--SLRPLDLEFMKHLS------KVVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS--SCCHHHHHHHHHHH------TTSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC--cCCHHHHHHHHHHH------hcCcEEEEEeccccCC
Confidence 11 1 11236889999997642 23333333333333 2389999999999876
Q ss_pred CCCHHHHHHHHHHHHH
Q 024385 192 AHTKEFIRKQMEKEID 207 (268)
Q Consensus 192 ~~~~~~~~~~l~~~l~ 207 (268)
........+.+.+.+.
T Consensus 155 ~~e~~~~k~~i~~~l~ 170 (270)
T 3sop_A 155 LEEKSEFKQRVRKELE 170 (270)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5444444444444444
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.99 E-value=7.3e-09 Score=92.18 Aligned_cols=114 Identities=23% Similarity=0.260 Sum_probs=65.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH------cCCcccccceeecc----------------ccceEEeecc------------
Q 024385 64 STTIVLAGLSGSGKTVLFYQLR------DGSTHQGTVTSMEP----------------NEDTFVLHSE------------ 109 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~------~~~~~~~~~~~~~~----------------~~~~~~~~~~------------ 109 (268)
...|+++|.+||||||++++|. +.+. ...+.++ ....+.....
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kV---llVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~ 177 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKT---CLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE 177 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCE---EEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE---EEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHH
Confidence 4579999999999999999997 3322 1111100 0000110000
Q ss_pred -cccCCceeeEEEEeCCCCCCchh-hH---hhh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcE-E
Q 024385 110 -STKKGKIKPVHLVDVPGHSRLRP-KL---DEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-L 181 (268)
Q Consensus 110 -~~~~~~~~~~~i~DtpG~~~~~~-~~---~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pi-i 181 (268)
....+ +.+.|+||||...... .. ... ...+|.+++|+|+..+ ...... ...+. ...|+ .
T Consensus 178 ~~~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g-~~~~~~---a~~~~-------~~~~i~g 244 (504)
T 2j37_W 178 KFKNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG-QACEAQ---AKAFK-------DKVDVAS 244 (504)
T ss_dssp HHHHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCC-TTHHHH---HHHHH-------HHHCCCC
T ss_pred HHHHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccc-ccHHHH---HHHHH-------hhcCceE
Confidence 00123 6899999999764322 11 111 2278999999999987 322222 22221 12575 8
Q ss_pred EEeecCCCCCCC
Q 024385 182 ICCNKTDKVTAH 193 (268)
Q Consensus 182 vv~nK~Dl~~~~ 193 (268)
+|+||+|.....
T Consensus 245 vVlNK~D~~~~~ 256 (504)
T 2j37_W 245 VIVTKLDGHAKG 256 (504)
T ss_dssp EEEECTTSCCCC
T ss_pred EEEeCCccccch
Confidence 999999987543
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.94 E-value=5.2e-11 Score=102.57 Aligned_cols=131 Identities=13% Similarity=0.132 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCcc--cccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh-------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------- 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------- 133 (268)
...+++++|.+|+|||||+|+|++.... .....+..|.++..... ..... .+.++||||.......
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~---~~~liDtPG~~~~~~~~~~l~~~ 235 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE--IPLES---GATLYDTPGIINHHQMAHFVDAR 235 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EECST---TCEEEECCSCCCCSSGGGGSCTT
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE--EEeCC---CeEEEeCCCcCcHHHHHHHHhHH
Confidence 4578999999999999999999875100 00122233333332222 11222 4799999997643211
Q ss_pred -Hhhhc--cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 024385 134 -LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 206 (268)
Q Consensus 134 -~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l 206 (268)
...++ ...+.++|++|+... -.+..+.. + +.+. ..+.|+++++||+|.......+...+.+++.+
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~~-l-~~l~-----~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQT-LFFGGLAR-L-DYIK-----GGRRSFVCYMANELTVHRTKLEKADSLYANQL 303 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEE-EEETTTEE-E-EEEE-----SSSEEEEEEECTTSCEEEEEGGGHHHHHHHHB
T ss_pred HHHHHhcccccCceEEEEcCCce-EEECCEEE-E-EEcc-----CCCceEEEEecCCcccccccHHHHHHHHHHhc
Confidence 12222 668999999998432 00111100 1 1111 25789999999999987665555555555443
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.92 E-value=1.9e-10 Score=99.01 Aligned_cols=131 Identities=12% Similarity=0.120 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCccc---ccceeeccccceEEeecccccCCceeeEEEEeCCCCCCchhh------
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK------ 133 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~------ 133 (268)
...+++++|.+|+|||||+|+|++..... ....+..|.++..... ....+ .+.++||||..+....
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~---~~~liDtPG~~~~~~~~~~l~~ 233 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPLDE---ESSLYDTPGIINHHQMAHYVGK 233 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EESSS---SCEEEECCCBCCTTSGGGGSCH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEecC---CeEEEeCCCcCcHHHHHHHhhH
Confidence 45789999999999999999998753111 0112222333222221 11222 3789999997543211
Q ss_pred --Hhhh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 024385 134 --LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 206 (268)
Q Consensus 134 --~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l~~~l 206 (268)
...+ ....+.++|++|+... -....+.. + +.+. ..+.|+++++||+|.......+...+.+++.+
T Consensus 234 ~~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~~-~-d~l~-----~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~ 302 (368)
T 3h2y_A 234 QSLKLITPTKEIKPMVFQLNEEQT-LFFSGLAR-F-DYVS-----GGRRAFTCHFSNRLTIHRTKLEKADELYKNHA 302 (368)
T ss_dssp HHHHHHSCSSCCCCEEEEECTTEE-EEETTTEE-E-EEEE-----SSSEEEEEEECTTSCEEEEEHHHHHHHHHHHB
T ss_pred HHHHHhccccccCceEEEEcCCCE-EEEcceEE-E-EEec-----CCCceEEEEecCccccccccHHHHHHHHHHHh
Confidence 1122 2567889999998432 00111100 1 1111 25789999999999987776666666655543
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.88 E-value=2e-08 Score=87.25 Aligned_cols=166 Identities=13% Similarity=0.124 Sum_probs=88.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccc-cceeecccc--ceEEeecccccCCceeeEEEEeCCCCCCchhhHhhh-
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG-TVTSMEPNE--DTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEF- 137 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~- 137 (268)
.....++++|++|||||||+|.+.+-..+.. .+..-.... ..+.+.. ...-.++++|+||..........+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-----~~~~~ltv~D~~g~~~~~~~~~~~L 141 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-----PNIPNVVFWDLPGIGSTNFPPDTYL 141 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-----SSCTTEEEEECCCGGGSSCCHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-----cccCCeeehHhhcccchHHHHHHHH
Confidence 3566899999999999999999987432111 111101111 0111111 111257999999964322222222
Q ss_pred ----ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC---------CCCCHHHHHHHHHH
Q 024385 138 ----LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV---------TAHTKEFIRKQMEK 204 (268)
Q Consensus 138 ----~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~---------~~~~~~~~~~~l~~ 204 (268)
+...+..++ +|...+ ...+..+...+.. .+.|+++|.||.|+. +.....++.+.+.+
T Consensus 142 ~~~~L~~~~~~~~-lS~G~~----~kqrv~la~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 142 EKMKFYEYDFFII-ISATRF----KKNDIDIAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp HHTTGGGCSEEEE-EESSCC----CHHHHHHHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred HHcCCCccCCeEE-eCCCCc----cHHHHHHHHHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence 233455555 777643 1222333333332 578999999999974 12233444433333
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeee--ccCC-chhHHHHHHhhcC
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG--LTGE-ISQVEQFIREQVK 267 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa--~~g~-i~~l~~~l~~~~~ 267 (268)
...+...... .....++.+|+ +++. +++|.+.|.+.+|
T Consensus 212 l~~~~l~~~g-------------------------~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 212 NCVNTFRENG-------------------------IAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HHHHHHHHTT-------------------------CSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HHHHHHHhcC-------------------------CCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 2110000000 00125778899 6664 9999999988876
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.88 E-value=2.8e-09 Score=92.01 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=61.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCc-cccc--ceeeccccceEEeecc-c-----ccCCc---eeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST-HQGT--VTSMEPNEDTFVLHSE-S-----TKKGK---IKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~-~-----~~~~~---~~~~~i~DtpG~~~ 129 (268)
....+++++|++|||||||+|.|++... .... .++..|+.+...++.. + ..... ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4567999999999999999999998654 2212 2355666665554320 0 00010 02579999999543
Q ss_pred -------chhhHhhhccCCCEEEEEEeCCC
Q 024385 130 -------LRPKLDEFLPQAAGIVFVVDALE 152 (268)
Q Consensus 130 -------~~~~~~~~~~~~d~ii~v~d~~~ 152 (268)
+...+..+++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456677889999999999975
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.80 E-value=6.4e-09 Score=86.19 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=63.1
Q ss_pred EEeCCCCC-CchhhHhhhccCCCEEEEEEeCCCCCCCH-HHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHH
Q 024385 121 LVDVPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 198 (268)
Q Consensus 121 i~DtpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 198 (268)
|-+.|||. .....+...+..+|+++.|+|+.++..+. ..+.+++ .++|.++|+||+|+.+. +..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----------~~kp~ilVlNK~DL~~~---~~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-----------KNKPRIMLLNKADKADA---AVT 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----------SSSCEEEEEECGGGSCH---HHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----------CCCCEEEEEECcccCCH---HHH
Confidence 55689987 44566778899999999999999974332 2333332 57899999999999752 111
Q ss_pred HHHHHHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 199 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 199 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
...+ +.++ ..+++++.+||++|. +++|.+++.+.+
T Consensus 69 ~~~~-~~~~--------------------------------~~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 69 QQWK-EHFE--------------------------------NQGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHHH-HHHH--------------------------------TTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHH-HHHH--------------------------------hcCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 1111 1111 112368899999998 999888776653
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.69 E-value=1.9e-08 Score=86.45 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=68.3
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEK 204 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~ 204 (268)
..++|+..+..+.+.++++++|+|++++ . ..|...+.+.. .+.|+++|+||+|+.+.. ..+.+.+.+..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~---~---~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~ 124 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDF---N---GSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRY 124 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSH---H---HHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCC---c---ccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence 4567888899999999999999999885 1 22322222221 478999999999997643 23334333332
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
..+.. + ....+++.+||++|. +++|+++|.++.
T Consensus 125 ~~~~~------------------g-----------~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 125 SAKQL------------------G-----------LKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHT------------------T-----------CCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHc------------------C-----------CCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 22210 0 011268899999999 999999997653
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.64 E-value=3e-08 Score=85.34 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=67.6
Q ss_pred CCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCC-CHHHHHHHHHH
Q 024385 126 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEK 204 (268)
Q Consensus 126 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~l~~ 204 (268)
.+++|+..+..+.+.++++++|+|++++.. .|...+.+.. .+.|+++|+||+|+.+.. ..+.+.+.+..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 478899999999999999999999999721 1222222111 478999999999998653 23334333332
Q ss_pred HHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhhc
Q 024385 205 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 266 (268)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 266 (268)
.+... + .....++.+||++|. +++|.+.|.++.
T Consensus 127 ~~~~~------------------g-----------~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEEL------------------G-----------LCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTT------------------T-----------CCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHc------------------C-----------CCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 22210 0 011268899999999 999999997653
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.48 E-value=4.2e-07 Score=79.63 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=40.8
Q ss_pred eeEEEEeCCCCCCchhhHh------hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCC-c-EEEEeecCC
Q 024385 117 KPVHLVDVPGHSRLRPKLD------EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI-P-VLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-p-iivv~nK~D 188 (268)
+.+.|+||||......... ..+..+|.+++|+|+..+ . ........+ . ... | ..+|+||+|
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g-~---~~~~~~~~~-~------~~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG-Q---QAGIQAKAF-K------EAVGEIGSIIVTKLD 249 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG-G---GHHHHHHHH-H------TTSCSCEEEEEECSS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeecccc-H---HHHHHHHHH-h------hcccCCeEEEEeCCC
Confidence 6889999999765422211 122368999999999876 2 122222222 1 345 5 789999999
Q ss_pred CCC
Q 024385 189 KVT 191 (268)
Q Consensus 189 l~~ 191 (268)
...
T Consensus 250 ~~~ 252 (432)
T 2v3c_C 250 GSA 252 (432)
T ss_dssp SCS
T ss_pred Ccc
Confidence 864
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.44 E-value=2e-07 Score=77.13 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=36.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSR 129 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 129 (268)
....+++++|.+|+|||||+|+|.+.... .++..|.++.... .+... ..+.++||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~---~~~~~~g~T~~~~--~~~~~---~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIA---KTGDRPGITTSQQ--WVKVG---KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------C--CEEET---TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCcee---ecCCCCCeeeeeE--EEEeC---CCEEEEECcCcCC
Confidence 35678999999999999999999987631 1111222221111 11112 2689999999764
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.39 E-value=2.7e-06 Score=74.27 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=40.0
Q ss_pred eeEEEEeCCCCCCchhhHh------hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLD------EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.|+||||......... .....+|.+++|+|+..+ ....... ..+.. .-.+..+|+||+|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g-q~a~~~a---~~f~~------~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG-QQAYNQA---LAFKE------ATPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG-GGHHHHH---HHHHH------SCTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc-hhHHHHH---HHHHh------hCCCeEEEEECCCCc
Confidence 6789999999654322211 122357999999999886 3222222 22222 223456899999986
Q ss_pred C
Q 024385 191 T 191 (268)
Q Consensus 191 ~ 191 (268)
.
T Consensus 253 ~ 253 (443)
T 3dm5_A 253 A 253 (443)
T ss_dssp S
T ss_pred c
Confidence 4
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.38 E-value=2.6e-07 Score=75.68 Aligned_cols=58 Identities=16% Similarity=0.330 Sum_probs=35.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
.+++++|.+|+|||||+|+|.+..... .+..+.++... ..+..+ ..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~---~~~~~g~T~~~--~~~~~~---~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS---VGAQPGITKGI--QWFSLE---NGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------CCS--CEEECT---TSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc---cCCCCCCccce--EEEEeC---CCEEEEECCCcccC
Confidence 699999999999999999999876521 11111111110 011111 26799999997754
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.23 E-value=3e-07 Score=75.30 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=56.4
Q ss_pred CCCCCC-chhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCHHHHHHHH
Q 024385 124 VPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 202 (268)
Q Consensus 124 tpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~l 202 (268)
.|||.. ........+..+|+++.|+|+.++..+.... +. + . ++|.++|+||+|+.+. +...+ .
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~---l~-l------l--~k~~iivlNK~DL~~~---~~~~~-~ 67 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG---VD-F------S--RKETIILLNKVDIADE---KTTKK-W 67 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT---SC-C------T--TSEEEEEEECGGGSCH---HHHHH-H
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH---HH-h------c--CCCcEEEEECccCCCH---HHHHH-H
Confidence 588764 3456778899999999999999873322111 11 1 1 7899999999999753 11111 1
Q ss_pred HHHHHHHHHhhhccccccccCcccCCCCCCCeeeccCCceeEEEEeeeccCC-chhHHHHHHhh
Q 024385 203 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 265 (268)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 265 (268)
.+.++. .++++ .+||++|. +++|.+++.+.
T Consensus 68 ~~~~~~--------------------------------~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 68 VEFFKK--------------------------------QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHH--------------------------------TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHH--------------------------------cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 111110 11245 78999998 99998887653
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.22 E-value=2.6e-06 Score=77.95 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCCcc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGSTH 90 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~~~ 90 (268)
-+.++++|++|||||||++.+.+-..+
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CCeEEEECCCCChHHHHHHHHhCCCCC
Confidence 356999999999999999999886433
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.19 E-value=2e-06 Score=77.93 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=40.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccc-eeeccccceEEeecccccCCceeeEEEEeCCCCCCc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV-TSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRL 130 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 130 (268)
.+..+|+|+|.+|+|||||+|+|++....-... ++...+.+.+....... ......+.++||||..+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCCG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCcc
Confidence 455789999999999999999999876311111 11122222222211111 111247899999997653
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.10 E-value=8e-06 Score=71.29 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=38.8
Q ss_pred eeEEEEeCCCCCC--chhh----Hhhh--ccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCC
Q 024385 117 KPVHLVDVPGHSR--LRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 188 (268)
Q Consensus 117 ~~~~i~DtpG~~~--~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~D 188 (268)
+.+.|+||||... .... .... ....+.+++|+|+..+ .........+.+. -.+..+++||+|
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g-q~a~~~a~~f~~~---------~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG-QKAYDLASRFHQA---------SPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG-GGGHHHHHHHHHH---------CSSEEEEEECGG
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc-hHHHHHHHHHhcc---------cCCcEEEEeccc
Confidence 6788999999644 2111 1111 1246899999999886 3333333333221 234678889999
Q ss_pred CC
Q 024385 189 KV 190 (268)
Q Consensus 189 l~ 190 (268)
..
T Consensus 250 ~~ 251 (433)
T 3kl4_A 250 GT 251 (433)
T ss_dssp GC
T ss_pred cc
Confidence 75
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.04 E-value=1.5e-05 Score=66.25 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=40.7
Q ss_pred eeEEEEeCCCCCC--chhhHh------hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecC
Q 024385 117 KPVHLVDVPGHSR--LRPKLD------EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKT 187 (268)
Q Consensus 117 ~~~~i~DtpG~~~--~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~ 187 (268)
+.+.++||||... ...... .....+|.+++|+|+... . ........+. ...| ..+|+||+
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~---~~~~~~~~~~-------~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG-Q---KAYDLASKFN-------QASKIGTIIITKM 249 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG-G---GHHHHHHHHH-------HTCTTEEEEEECG
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch-H---HHHHHHHHHH-------hhCCCCEEEEeCC
Confidence 6789999999876 322211 234468999999999765 2 2222222222 2355 67899999
Q ss_pred CCCC
Q 024385 188 DKVT 191 (268)
Q Consensus 188 Dl~~ 191 (268)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9753
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.02 E-value=4.1e-06 Score=69.89 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=39.4
Q ss_pred HhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 134 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 134 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
.+..+.++|.+++|+|+.++..+...+..++..... .++|.++|+||+|+.+.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~------~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------NDIQPIICITKMDLIED 132 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------TTCEEEEEEECGGGCCC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------CCCCEEEEEECCccCch
Confidence 445678899999999999774555555555533322 68899999999999864
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.93 E-value=2.4e-05 Score=68.49 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=40.1
Q ss_pred eeEEEEeCCCCCCchhhHh------hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLD------EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDK 189 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl 189 (268)
+.+.|+||||......... ..+..++.+++|+|+..+ ...-.. ...+. ...+ .-+|+||+|.
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g-~~~~~~---~~~f~-------~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG-QDAANT---AKAFN-------EALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC-TTHHHH---HHHHH-------HHSCCCCEEEECTTS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh-HHHHHH---HHHHh-------ccCCCeEEEEecCCC
Confidence 6789999999765432221 224468999999999876 332222 22221 2234 3478999998
Q ss_pred CCC
Q 024385 190 VTA 192 (268)
Q Consensus 190 ~~~ 192 (268)
...
T Consensus 253 ~~~ 255 (433)
T 2xxa_A 253 DAR 255 (433)
T ss_dssp SSC
T ss_pred Ccc
Confidence 543
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.68 E-value=0.00011 Score=61.86 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=21.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999854
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.62 E-value=6e-05 Score=65.98 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=41.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC------------------CcccccceeeccccceEEeecc---cccCCceeeEE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG------------------STHQGTVTSMEPNEDTFVLHSE---STKKGKIKPVH 120 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 120 (268)
.+...|.|+|++++|||||+|+|++. .|.... ++-..+.+.+..... ...+|....+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~-t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC-SSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC-CCCCceeEEEEecCccccccCCCCcceEE
Confidence 34566899999999999999999853 221111 111122333332211 11244457899
Q ss_pred EEeCCCCCCch
Q 024385 121 LVDVPGHSRLR 131 (268)
Q Consensus 121 i~DtpG~~~~~ 131 (268)
++||||..+..
T Consensus 144 llDTeG~~~~~ 154 (447)
T 3q5d_A 144 LMDTQGTFDSQ 154 (447)
T ss_dssp EEEEECCCSSH
T ss_pred EEcCCcccccc
Confidence 99999987654
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.59 E-value=0.00012 Score=62.21 Aligned_cols=49 Identities=22% Similarity=0.182 Sum_probs=33.7
Q ss_pred hccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 137 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 137 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
...++|.+++|.. ..+..+...+..++..... .++|.+||+||+||.+.
T Consensus 127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~------~~~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCET------LQVEPLIVLNKIDLLDD 175 (358)
T ss_dssp EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHH------HTCEEEEEEECGGGCCH
T ss_pred HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHh------cCCCEEEEEECccCCCc
Confidence 3578899997755 4554455555555544332 57888999999999854
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.55 E-value=0.00014 Score=64.27 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....++|+|++|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345799999999999999998753
No 237
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.50 E-value=2.1e-05 Score=69.75 Aligned_cols=99 Identities=21% Similarity=0.180 Sum_probs=56.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCCcccccceeeccccceEEeecccccCCceeeEEEEeCCCCC--CchhhH-----
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHS--RLRPKL----- 134 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--~~~~~~----- 134 (268)
.....|+++|.+||||||+.++|...-... ...+....... +. ....+......+||..|.+ +.+..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~--~r--~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQ--YR--RDMVKTYKSFEFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHH--HH--HHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecch--hh--hhhccCCCcccccCCCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999987542100 11111100000 00 0011111234678998873 223333
Q ss_pred ---hhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHH
Q 024385 135 ---DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDI 167 (268)
Q Consensus 135 ---~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~ 167 (268)
..++..+++.++|+|+++. .......|+..+
T Consensus 112 ~~~~~~l~~~~G~~vV~D~tn~--~~~~R~~~~~~~ 145 (469)
T 1bif_A 112 NDVRKFLSEEGGHVAVFDATNT--TRERRAMIFNFG 145 (469)
T ss_dssp HHHHHHHHTTCCSEEEEESCCC--SHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCC--CHHHHHHHHHHH
Confidence 5667677888999999996 345555554433
No 238
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.49 E-value=0.00034 Score=58.27 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
+...++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35679999999999999999985
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.36 E-value=0.00025 Score=59.14 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 024385 64 STTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
...++++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3468999999999999998874
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.31 E-value=0.0017 Score=54.50 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=38.2
Q ss_pred eeEEEEeCCCCCCchhhHh-------hhc-----cCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEE
Q 024385 117 KPVHLVDVPGHSRLRPKLD-------EFL-----PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLIC 183 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~-------~~~-----~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv 183 (268)
+.+.|+||||......... ..+ ..+|.+++|+|+... ...+ .....+. ...+ .-+|
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~---~~~l-~~~~~~~-------~~~~i~GvV 260 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG---QNGV-IQAEEFS-------KVADVSGII 260 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT---HHHH-HHHHHHT-------TTSCCCEEE
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc---HHHH-HHHHHHh-------hcCCCcEEE
Confidence 6889999999765321111 111 247899999999864 2222 2222221 2233 3488
Q ss_pred eecCCCCCC
Q 024385 184 CNKTDKVTA 192 (268)
Q Consensus 184 ~nK~Dl~~~ 192 (268)
+||.|....
T Consensus 261 ltk~d~~~~ 269 (320)
T 1zu4_A 261 LTKMDSTSK 269 (320)
T ss_dssp EECGGGCSC
T ss_pred EeCCCCCCc
Confidence 999997543
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.26 E-value=0.00092 Score=51.86 Aligned_cols=69 Identities=10% Similarity=0.101 Sum_probs=48.7
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+.|+|+|+.. .......+..+|.+++++..+.. + ......+..+..... ...+.++.+|+|++|...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~--~-~~~~~~~~~l~~~~~-~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL--D-FSAAGSVVTVLEAQA-YSRKVEARFLITRKIEMA 144 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT--T-HHHHHHHHHHHTTSC-GGGCCEEEEEECSBCTTE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH--H-HHHHHHHHHHHHHHH-hCCCCcEEEEEeccCCCc
Confidence 688999999876 44556667779999999998875 4 555555554443221 125678899999999643
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.22 E-value=0.00053 Score=57.08 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
....++++|++|||||||+|.+. ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45678999999999999999998 53
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.18 E-value=0.00012 Score=61.12 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
....++++|++|||||||+|.|.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 46789999999999999999998754
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.13 E-value=0.00042 Score=60.34 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=37.7
Q ss_pred eeEEEEeCCCCCCchh-hHh-----hhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCc-EEEEeecCCC
Q 024385 117 KPVHLVDVPGHSRLRP-KLD-----EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDK 189 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-iivv~nK~Dl 189 (268)
+.+.|+||||...... ... ...-.+|.+++|+|+... . ........+.. ..+ .-+|+||.|.
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg-q---~av~~a~~f~~-------~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG-Q---EALSVARAFDE-------KVGVTGLVLTKLDG 249 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT-T---HHHHHHHHHHH-------HTCCCEEEEESGGG
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch-H---HHHHHHHHHHh-------cCCceEEEEeCcCC
Confidence 6789999999764322 111 112358899999999765 2 22222222221 122 4578899997
Q ss_pred CC
Q 024385 190 VT 191 (268)
Q Consensus 190 ~~ 191 (268)
..
T Consensus 250 ~~ 251 (425)
T 2ffh_A 250 DA 251 (425)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 245
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.09 E-value=0.00045 Score=58.72 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
....++++|++|||||||+|.|.+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 456899999999999999999997643
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.09 E-value=0.00032 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|||||||++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4557999999999999999999763
No 247
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00025 Score=55.16 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...++++|++|||||||++.+.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999875
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.03 E-value=0.00037 Score=54.13 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+...++++|++|||||||+++|...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 345678999999999999999999854
No 249
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.00 E-value=0.00039 Score=53.20 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 250
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.97 E-value=0.00091 Score=55.62 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
....++++|++|||||||+|.+.+...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc
Confidence 456799999999999999999987543
No 251
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.94 E-value=0.0089 Score=49.53 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=45.5
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDK 189 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl 189 (268)
+.+.|+|||+.... ......+..+|.+|+|++++.. ++......+..+.... ...+.+++ +|+|+.+-
T Consensus 157 yD~ViiD~p~~~~~-~~~~~~l~~aD~viiv~~~~~~--s~~~~~~~~~~l~~~~--~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 157 TDVVIFDVLGDVVC-GGFAAPLQHADQAVVVTANDFD--SIYAMNRIIAAVQAKS--KNYKVRLAGCVANRSRA 225 (307)
T ss_dssp CSEEEEEECCSSCC-GGGGGGGGTCSEEEEEECSSHH--HHHHHHHHHHHHHTTT--TTCCCEEEEEEEESCSC
T ss_pred CCEEEEeCCCccch-HHHHHHHHHCCEEEEEecCcHH--HHHHHHHHHHHHHHhh--hcCCCceEEEEEecCCc
Confidence 68899999886542 2234567889999999987663 4566655555554321 12566655 99999994
No 252
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.94 E-value=0.0041 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...++++|+.|||||||++.+.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
No 253
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.91 E-value=0.0033 Score=49.18 Aligned_cols=66 Identities=8% Similarity=-0.045 Sum_probs=46.9
Q ss_pred eeEEEEeCCCC-CCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGH-SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+.++|+|+. .. ......+..+|.+|+++..+.. ++......+..+... .+.++.+|+|+.|...
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~~--~~~~~~~~~~~l~~~-----~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDAL--ALDALMLTIETLQKL-----GNNRFRILLTIIPPYP 134 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSHH--HHHHHHHHHHHHHHT-----CSSSEEEEECSBCCTT
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCch--hHHHHHHHHHHHHhc-----cCCCEEEEEEecCCcc
Confidence 67899999987 43 3445667789999999988763 455555555544432 2567889999999754
No 254
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.82 E-value=0.00075 Score=52.40 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|||||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4567999999999999999998764
No 255
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.80 E-value=0.00078 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-++++|++|||||||++.+.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45667999999999999999998764
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.80 E-value=0.0007 Score=53.49 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...++++|++|||||||++.+.+-
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45667999999999999999998764
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.78 E-value=0.00077 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...++++|++|||||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4557999999999999999999875
No 258
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.75 E-value=0.00088 Score=52.37 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|++|||||||++.+.+-
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45667999999999999999998764
No 259
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.75 E-value=0.00076 Score=51.79 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.++++|++|||||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998753
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.74 E-value=0.0007 Score=52.99 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++|+|++|||||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998764
No 261
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.72 E-value=0.00098 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+..-++++|++|||||||++.|...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35567999999999999999999865
No 262
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.72 E-value=0.025 Score=46.05 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=44.4
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~ 190 (268)
+.+.|+|||+..... ........+|.+|+|+..... +...+...+..+.. .+.+++ +|+|+.|..
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~--~~~~~~~~~~~l~~------~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENN--NKDEVKKGKELIEA------TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSC--CHHHHHHHHHHHHT------TTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCC--cHHHHHHHHHHHHh------CCCCEEEEEEeCCcCC
Confidence 678999999865432 223344568999999998874 46666665554443 456666 899999964
No 263
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.71 E-value=0.12 Score=42.35 Aligned_cols=67 Identities=10% Similarity=-0.052 Sum_probs=45.7
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
+.+.|+|||+..... ......+.+|.+|+|+..... +...+...+..+... ....+-+|+|++|...
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~--~~~~~~~~~~~l~~~-----g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVN--TLKEVETSLSRFEQN-----GIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTS--BHHHHHHHHHHHHHT-----TCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCC--cHHHHHHHHHHHHhC-----CCCEEEEEEcCccccc
Confidence 678999999875432 233455679999999998874 466666665555442 2233558999999653
No 264
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.71 E-value=0.00071 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+.--++++|++|||||||++.+..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 455689999999999999998654
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.64 E-value=0.001 Score=51.15 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
|+++||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999754
No 266
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.62 E-value=0.0013 Score=51.13 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+...++++|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999987653
No 267
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.58 E-value=0.0014 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...|+++|++||||||+.++|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5567999999999999999998753
No 268
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.53 E-value=0.0015 Score=52.23 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345679999999999999999887643
No 269
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.53 E-value=0.0064 Score=47.17 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+++..+..
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 334599999999999999998865
No 270
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.52 E-value=0.0013 Score=51.33 Aligned_cols=25 Identities=40% Similarity=0.379 Sum_probs=21.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++++|++|||||||++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999998866
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.50 E-value=0.0017 Score=50.41 Aligned_cols=25 Identities=36% Similarity=0.588 Sum_probs=21.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....++++|++||||||+++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 272
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.49 E-value=0.0015 Score=49.19 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+.+.|..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 273
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.46 E-value=0.0017 Score=51.49 Aligned_cols=26 Identities=42% Similarity=0.549 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998764
No 274
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.44 E-value=0.0017 Score=48.53 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456679999999999999999988743
No 275
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.43 E-value=0.0018 Score=53.80 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.7
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
-++.-.++|+|++|+|||||++.|.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 36778899999999999999998764
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.41 E-value=0.0018 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 277
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.41 E-value=0.0021 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHH
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
+...++++|++|||||||++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.41 E-value=0.002 Score=51.60 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|+.|||||||++.+.+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355679999999999999999988753
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.39 E-value=0.0019 Score=48.39 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 024385 65 TTIVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l 84 (268)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 280
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.39 E-value=0.0022 Score=48.75 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|+|||||++++...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3567999999999999999998763
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.39 E-value=0.0021 Score=49.77 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|++||||||+.+.|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999998863
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.39 E-value=0.0023 Score=49.65 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|++||||||+.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999998865
No 283
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.36 E-value=0.0019 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
-.++++|+.|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998753
No 284
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.35 E-value=0.0022 Score=52.58 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+.-.++++|+.|||||||++.+.+-
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 35667999999999999999998764
No 285
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.35 E-value=0.0018 Score=49.60 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 286
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.33 E-value=0.06 Score=44.46 Aligned_cols=65 Identities=11% Similarity=-0.030 Sum_probs=42.6
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEE-EEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pii-vv~nK~Dl~ 190 (268)
+.+.|+|||+..... ........+|.+|+|+..... +...+...+..+.. .+.+++ +|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~--~~~~~~~~~~~l~~------~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLN--TAKEVSLSMQRLEQ------AGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTS--CTTHHHHHHHHHHH------TTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCC--hHHHHHHHHHHHHh------CCCCeEEEEEeCCccC
Confidence 578999999875432 222344678999999988764 35555555554443 234433 888999964
No 287
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.33 E-value=0.0023 Score=52.03 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355678999999999999999988743
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.33 E-value=0.0023 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|+.|||||||++.+.+-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355679999999999999999988753
No 289
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.33 E-value=0.0022 Score=49.73 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 290
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.33 E-value=0.0022 Score=50.54 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|||||||++.+.+-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999988753
No 291
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.33 E-value=0.007 Score=52.84 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=40.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc------------------CCcccccceeecc-ccceEEeeccc---ccCCceeeE
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD------------------GSTHQGTVTSMEP-NEDTFVLHSES---TKKGKIKPV 119 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~------------------~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~ 119 (268)
.+..-|.|+|+.++|||+|+|.++. ..|... .+..+ +.|.+.....+ ..+|..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~--~~~~~~TkGIWmw~~p~~~~~~~g~~~~v 142 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR--GGSERETTGIQIWSEIFLINKPDGKKVAV 142 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCC--CSSSCCCCSEEEESSCEEEECTTSCEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeC--CCCCCcCceEEEecCcccccCCCCCeeEE
Confidence 3455678999999999999996541 223211 12222 33444332211 225666789
Q ss_pred EEEeCCCCCCc
Q 024385 120 HLVDVPGHSRL 130 (268)
Q Consensus 120 ~i~DtpG~~~~ 130 (268)
.++||.|..+.
T Consensus 143 lllDTEG~~d~ 153 (457)
T 4ido_A 143 LLMDTQGTFDS 153 (457)
T ss_dssp EEEEECCBTCT
T ss_pred EEEeccCCCCc
Confidence 99999997654
No 292
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.33 E-value=0.0022 Score=51.63 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355679999999999999999987753
No 293
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.32 E-value=0.002 Score=49.75 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998865
No 294
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.31 E-value=0.0015 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....++++|++|+|||||++.+.+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999988653
No 295
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.31 E-value=0.0021 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++++|++|||||||++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4566799999999999999999875
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.30 E-value=0.0022 Score=48.44 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....++++|++||||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 297
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.29 E-value=0.0024 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 35667999999999999999998874
No 298
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.29 E-value=0.0024 Score=51.76 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355679999999999999999988753
No 299
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.28 E-value=0.0023 Score=51.46 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999998764
No 300
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.28 E-value=0.0026 Score=51.71 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35568999999999999999998874
No 301
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.26 E-value=0.0027 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 35567899999999999999998864
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.26 E-value=0.0022 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.26 E-value=0.0018 Score=51.50 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=17.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH-cC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR-DG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~-~~ 87 (268)
.....++++|++|||||||++.|. +.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 456679999999999999999998 54
No 304
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.24 E-value=0.0027 Score=51.18 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355678999999999999999988753
No 305
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.23 E-value=0.0027 Score=50.87 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355679999999999999999988753
No 306
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.22 E-value=0.0031 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999885
No 307
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.22 E-value=0.003 Score=50.97 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35567999999999999999999884
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.22 E-value=0.0028 Score=51.78 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355679999999999999999987753
No 309
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.21 E-value=0.003 Score=51.21 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999988753
No 310
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.21 E-value=0.0028 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 311
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.21 E-value=0.0033 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 312
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.20 E-value=0.015 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...+++.|+||+|||+++..+..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999888764
No 313
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.20 E-value=0.0026 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....++|+|++|||||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4566799999999999999998765
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.19 E-value=0.0028 Score=48.45 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|+++|.+||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998764
No 315
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.19 E-value=0.0029 Score=51.90 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=22.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-.++++|+.|||||||++.+.+-.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355679999999999999999988753
No 316
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.18 E-value=0.0032 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 317
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.18 E-value=0.0031 Score=48.13 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 318
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.18 E-value=0.0015 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..++|+|++|||||||++.+.+-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 319
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.17 E-value=0.0029 Score=48.44 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 320
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.17 E-value=0.0022 Score=50.29 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..-.++++|+.|||||||++.+.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999998764
No 321
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.16 E-value=0.0032 Score=47.97 Aligned_cols=24 Identities=46% Similarity=0.519 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999853
No 322
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.16 E-value=0.0036 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++++|++|||||||++.+.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3444899999999999999999865
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.15 E-value=0.0034 Score=49.37 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+++|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998854
No 324
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.13 E-value=0.0029 Score=48.33 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|++.|++||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 325
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.12 E-value=0.0036 Score=47.28 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+.++|++|+|||||+.+|..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 326
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.12 E-value=0.0033 Score=50.83 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|||||||++.+.+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999988753
No 327
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.11 E-value=0.0034 Score=51.12 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|+.|||||||++.+.+-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35567899999999999999998764
No 328
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.10 E-value=0.0024 Score=53.10 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|++|||||||++.+.+-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 45678999999999999999988764
No 329
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.10 E-value=0.0035 Score=48.77 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|+++|++||||||+.+.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999864
No 330
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.06 E-value=0.004 Score=49.71 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.+.-.++++|++|||||||++.+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 456679999999999999999887
No 331
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.06 E-value=0.0039 Score=47.31 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
No 332
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.06 E-value=0.0082 Score=45.35 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+|||++++.+...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 45567999999999999999988653
No 333
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.04 E-value=0.0031 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++++|++|||||||++.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999976
No 334
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.03 E-value=0.0035 Score=50.31 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998865
No 335
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.02 E-value=0.0031 Score=48.05 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 336
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.00 E-value=0.0041 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+++|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 337
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.00 E-value=0.0046 Score=47.77 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...|++.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998764
No 338
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.99 E-value=0.0042 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+.-.++++|+.|||||||++.+.+-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45679999999999999999987653
No 339
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.99 E-value=0.0045 Score=47.43 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|++||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998853
No 340
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.98 E-value=0.004 Score=48.71 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 341
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.97 E-value=0.0045 Score=52.76 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=23.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.....++++|++|||||||++.+.+--
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 466789999999999999999998743
No 342
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.97 E-value=0.0042 Score=47.93 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
No 343
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.95 E-value=0.0042 Score=48.25 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 344
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.95 E-value=0.0043 Score=48.85 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
No 345
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.95 E-value=0.004 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.-.++++|+.|||||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5578999999999999999998754
No 346
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.92 E-value=0.005 Score=52.33 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45578999999999999999998754
No 347
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.91 E-value=0.0045 Score=48.46 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|+++|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 348
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.91 E-value=0.0051 Score=47.81 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 349
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.90 E-value=0.0037 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+++|+|++|||||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 668999999999999999998754
No 350
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.90 E-value=0.0045 Score=48.04 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 351
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.90 E-value=0.007 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 024385 64 STTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.+-++++|++|||||||++.|.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998874
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.89 E-value=0.0052 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....|+++|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 353
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.88 E-value=0.0054 Score=47.77 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 354
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.0047 Score=47.23 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 355
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.85 E-value=0.0054 Score=52.49 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...-.++++|++|||||||++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4556799999999999999999875
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.85 E-value=0.0048 Score=47.86 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=21.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++++|++||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 357
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.84 E-value=0.0058 Score=52.02 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|++|||||||++.+.+-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 345678999999999999999987643
No 358
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.84 E-value=0.0042 Score=45.83 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998763
No 359
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.83 E-value=0.0055 Score=48.12 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 360
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.83 E-value=0.0041 Score=47.50 Aligned_cols=25 Identities=44% Similarity=0.662 Sum_probs=21.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|.+||||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3556799999999999999998864
No 361
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.82 E-value=0.0052 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|++.|++||||||+..+|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999999864
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.80 E-value=0.004 Score=47.20 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=16.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 363
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.80 E-value=0.0061 Score=51.88 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45678999999999999999988753
No 364
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.80 E-value=0.006 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45578999999999999999988643
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.79 E-value=0.0048 Score=50.86 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.++|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 366
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.79 E-value=0.006 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~ 85 (268)
.....|+|+|++||||||+.+.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999987
No 367
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.79 E-value=0.0051 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998865
No 368
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.79 E-value=0.0059 Score=51.80 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|++|||||||++.+.+-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345678999999999999999987653
No 369
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.78 E-value=0.0063 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45578999999999999999998753
No 370
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.77 E-value=0.0056 Score=47.37 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|++.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 371
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.77 E-value=0.0052 Score=50.71 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999988753
No 372
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.74 E-value=0.0057 Score=46.16 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+|+++|++||||||+.+.|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 373
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.72 E-value=0.0069 Score=51.77 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|++|||||||++.+.+-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345678999999999999999987643
No 374
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.71 E-value=0.0098 Score=44.80 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+|||+++..+...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988653
No 375
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.71 E-value=0.0058 Score=49.51 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++..|+++|.+||||||+.+.|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 376
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.70 E-value=0.0052 Score=50.25 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.-++++|++|+|||||++.+.+.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34999999999999999998763
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.69 E-value=0.0059 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...++++|+.||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998753
No 378
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.68 E-value=0.0053 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|||||||++.+.+-
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558999999999999999998864
No 379
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.67 E-value=0.007 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45578999999999999999988753
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.63 E-value=0.0072 Score=46.41 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 381
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.62 E-value=0.0069 Score=46.66 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|+++|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999998765
No 382
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.61 E-value=0.0069 Score=47.37 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 383
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.60 E-value=0.059 Score=46.09 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+....++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4566899999999999999998875
No 384
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.60 E-value=0.0059 Score=51.73 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|++|||||||++.+.+-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 45578999999999999999987653
No 385
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.60 E-value=0.0078 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...-.++++|++|||||||++.+.+-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34567999999999999999998763
No 386
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.59 E-value=0.01 Score=53.00 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....++++|++|||||||++.+.+-
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4556999999999999999998764
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.59 E-value=0.0074 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998854
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.59 E-value=0.0073 Score=45.72 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 389
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.58 E-value=0.0063 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...++++|++|+|||||++.+.+.
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 334999999999999999998763
No 390
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.55 E-value=0.0034 Score=48.97 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 391
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.54 E-value=0.0081 Score=44.82 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.54 E-value=0.0075 Score=45.83 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988754
No 393
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.53 E-value=0.0058 Score=48.49 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|++.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998764
No 394
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.52 E-value=0.009 Score=47.41 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....|+++|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
No 395
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.51 E-value=0.0094 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.-.++|+|++|||||||++.+.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999876
No 396
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.48 E-value=0.0074 Score=46.25 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 397
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.48 E-value=0.0089 Score=46.69 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|+++|+|||||+|...+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 398
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.46 E-value=0.0085 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|++.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 399
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.0089 Score=52.61 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=23.3
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
-.....++++|+.|||||||++.|.+-
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 357788999999999999999998653
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.45 E-value=0.009 Score=46.93 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...++++|++|+|||||++.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999999874
No 401
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.44 E-value=0.021 Score=44.91 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+|+..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998865
No 402
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.43 E-value=0.0077 Score=48.58 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.++++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 403
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.42 E-value=0.009 Score=45.60 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 404
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.40 E-value=0.0098 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..-|+++|+|||||+|...+|..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999988864
No 405
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.40 E-value=0.0057 Score=51.94 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|++|||||||++.+.+-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345678999999999999999988643
No 406
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.38 E-value=0.0094 Score=47.00 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 407
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.053 Score=45.21 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=23.4
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
......+++.|+||+|||++++.+...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 467788999999999999999998653
No 408
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.37 E-value=0.0096 Score=46.63 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 409
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.36 E-value=0.0057 Score=49.31 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|+++|++||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.33 E-value=0.013 Score=45.78 Aligned_cols=25 Identities=44% Similarity=0.610 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|.+||||||+.+.|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999998864
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.33 E-value=0.009 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...++++|+.||||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 44689999999999999998754
No 412
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.29 E-value=0.01 Score=44.99 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999754
No 413
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.28 E-value=0.0097 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHH
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQL 84 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l 84 (268)
++..||+++|.+||||||+++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 56889999999999999999886
No 414
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.28 E-value=0.011 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...++++|++|+|||||++.+.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999998753
No 415
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.27 E-value=0.03 Score=44.23 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=27.3
Q ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCC
Q 024385 142 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 192 (268)
Q Consensus 142 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~ 192 (268)
+.-++++|-..... ..+.+.+..+.. .++|++++|-..|-...
T Consensus 89 ~~dvViIDEaQ~l~--~~~ve~l~~L~~------~gi~Vil~Gl~~df~~~ 131 (223)
T 2b8t_A 89 ETKVIGIDEVQFFD--DRICEVANILAE------NGFVVIISGLDKNFKGE 131 (223)
T ss_dssp TCCEEEECSGGGSC--THHHHHHHHHHH------TTCEEEEECCSBCTTSS
T ss_pred CCCEEEEecCccCc--HHHHHHHHHHHh------CCCeEEEEeccccccCC
Confidence 34577778776411 234344444433 57999999999997654
No 416
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.26 E-value=0.011 Score=46.99 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|++.|++||||||++++|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 556799999999999999999865
No 417
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.25 E-value=0.0094 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..++++|++|+|||||++.+.+.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 34999999999999999998763
No 418
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.24 E-value=0.012 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....|++.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 419
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.22 E-value=0.013 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+|++.+.+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 355699999999999999999875
No 420
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.22 E-value=0.011 Score=47.57 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...|+++|++||||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 66899999999999999998854
No 421
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.21 E-value=0.013 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=21.9
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999976
No 422
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.14 E-value=0.011 Score=48.41 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+|+|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999863
No 423
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.10 E-value=0.032 Score=46.00 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=20.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||+++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999986643
No 424
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.09 E-value=0.014 Score=48.14 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+.--++++|++|+|||||+..+.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4566799999999999999998764
No 425
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.09 E-value=0.014 Score=46.22 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...++++|++|+|||||+..+...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45668999999999999999998873
No 426
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.07 E-value=0.031 Score=42.54 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 024385 67 IVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 67 i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 427
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.06 E-value=0.016 Score=47.20 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.4
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+|||+|++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45677999999999999999998653
No 428
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.03 E-value=0.014 Score=43.59 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=19.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..-.|++.|.+||||||+.+.|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998854
No 429
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.02 E-value=0.013 Score=47.07 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999998865
No 430
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.01 E-value=0.014 Score=53.08 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+.-.++++|++|||||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4557999999999999999998764
No 431
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.98 E-value=0.015 Score=44.76 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998765
No 432
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.97 E-value=0.017 Score=42.14 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....|++.|++|+|||++...+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 46678999999999999999988764
No 433
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.93 E-value=0.015 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++.-.++++|++|||||||++.+.+-
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999998764
No 434
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.91 E-value=0.016 Score=49.08 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=24.1
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-+++++|++|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 577899999999999999999998753
No 435
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.85 E-value=0.017 Score=47.39 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....+++.|++|+|||++++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4678999999999999999998753
No 436
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.79 E-value=0.019 Score=51.62 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|||||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55679999999999999999998743
No 437
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.79 E-value=0.02 Score=45.99 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||+++..+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 438
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.76 E-value=0.018 Score=42.32 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 024385 66 TIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~ 85 (268)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999875
No 439
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.74 E-value=0.02 Score=47.17 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...-+++.|+||+|||+|+..+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678889999999999998865
No 440
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.71 E-value=0.02 Score=47.32 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=37.8
Q ss_pred eeEEEEeCCCCCCchhh----Hhhhcc--CCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCC
Q 024385 117 KPVHLVDVPGHSRLRPK----LDEFLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 190 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~----~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~ 190 (268)
+.+.|+||||....... ....+. ..+.+++|+|++.. ...+..+...+. . .+ ..-++.||.|..
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~---~~~~~~~~~~~~-~-----l~-~~giVltk~D~~ 252 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK---YEDMKHIVKRFS-S-----VP-VNQYIFTKIDET 252 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC---HHHHHHHTTTTS-S-----SC-CCEEEEECTTTC
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC---HHHHHHHHHHHh-c-----CC-CCEEEEeCCCcc
Confidence 57899999997754321 122333 36778999998764 333333322111 0 12 234667999976
Q ss_pred C
Q 024385 191 T 191 (268)
Q Consensus 191 ~ 191 (268)
.
T Consensus 253 ~ 253 (296)
T 2px0_A 253 T 253 (296)
T ss_dssp S
T ss_pred c
Confidence 4
No 441
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.71 E-value=0.014 Score=53.17 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+.-.++++|++|||||||++.+.+-
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557999999999999999998764
No 442
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.71 E-value=0.045 Score=46.64 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
++..-++|.|++|+|||+|...+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3556789999999999999988753
No 443
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.67 E-value=0.015 Score=52.96 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+.-.++++|++|||||||++.+.+-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999988764
No 444
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.67 E-value=0.016 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
-.++++|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999998854
No 445
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.67 E-value=0.02 Score=44.24 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
....|+|+|++|+|||+|...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999997654
No 446
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.66 E-value=0.02 Score=50.03 Aligned_cols=27 Identities=26% Similarity=0.269 Sum_probs=23.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
.+.-+++++|++|||||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 567789999999999999999988753
No 447
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.65 E-value=0.026 Score=46.66 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.3
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+|||+|++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45667999999999999999998753
No 448
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.63 E-value=0.045 Score=46.51 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 024385 66 TIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+++.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 449
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.62 E-value=0.018 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|++||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.58 E-value=0.022 Score=46.50 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...++++|++|+|||||+..+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3566899999999999999998764
No 451
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.026 Score=49.15 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-|++.||||+|||+|++.+.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999998763
No 452
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.54 E-value=0.013 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+.-.++++|++|||||||++.+.+-
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4568999999999999999988764
No 453
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.52 E-value=0.019 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...+++.|++|+|||+|+..+..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.51 E-value=0.025 Score=44.87 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+...|+++|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999998864
No 455
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.025 Score=51.49 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|+|||||++.+.+-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45679999999999999999998643
No 456
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.43 E-value=0.021 Score=43.98 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+.|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999988653
No 457
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.39 E-value=0.017 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.-.++++|++|||||||++.+.+-
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999988764
No 458
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.38 E-value=0.05 Score=45.65 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+++.|++|+||||+++.+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999988764
No 459
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.38 E-value=0.022 Score=48.55 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 024385 66 TIVLAGLSGSGKTVLFYQLR 85 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~ 85 (268)
-++|+|+.|+|||||++.++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57799999999999999975
No 460
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.37 E-value=0.026 Score=47.86 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||||++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999875
No 461
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.34 E-value=0.2 Score=39.55 Aligned_cols=72 Identities=15% Similarity=-0.021 Sum_probs=50.2
Q ss_pred eeEEEEeCCCCCCchhhHhhhccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHhcCCccCCCCcEEEEeecCCCCCCCCH
Q 024385 117 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 195 (268)
Q Consensus 117 ~~~~i~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 195 (268)
+.+.|+|+|+... ......+..+|.+|+++..+.. ++......+..+.... .....+-+|+|+.|.......
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~--~~~~~~~~~~~l~~~~---~~~~~~~~v~N~~~~~~~~~~ 190 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQ--SLRRAGQLLKLCKEFE---KPISRIEIILNRADTNSRITS 190 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHH--HHHHHHHHHHHHHTCS---SCCSCEEEEEESTTSCTTSCH
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHH--HHHHHHHHHHHHHHhC---CCccceEEEEecCCCCCCCCH
Confidence 6789999998653 3455667889999999988763 4666666665554432 134568899999997654443
No 462
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.034 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...-+++.||||+|||+|++++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999875
No 463
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.034 Score=48.47 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-|++.||||+|||+|++.+.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999998763
No 464
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.27 E-value=0.031 Score=44.29 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=20.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.+..-++++|++|+|||||+.++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556789999999999999877653
No 465
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.27 E-value=0.024 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
+.-.++++|+.|||||||++.+.+-.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44568999999999999999988743
No 466
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.26 E-value=0.03 Score=46.03 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||++++.+..
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
No 467
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.26 E-value=0.06 Score=45.68 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||+|++.+..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 468
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.25 E-value=0.028 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHc
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..-|+++|++||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999875
No 469
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.24 E-value=0.018 Score=41.99 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....|++.|++|+|||++...+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35567999999999999999877653
No 470
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.22 E-value=0.026 Score=47.04 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+|++.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999998865
No 471
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.20 E-value=0.036 Score=47.69 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-+++.||||+|||+|++.+.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 45677999999999999999998763
No 472
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.19 E-value=0.015 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=17.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998754
No 473
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.18 E-value=0.029 Score=46.60 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..-|+|+|++|||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 345889999999999999999754
No 474
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.17 E-value=0.022 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999998866
No 475
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.16 E-value=0.029 Score=51.11 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-.++++|+.|+|||||++.+.+-.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 355679999999999999999987643
No 476
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.15 E-value=0.034 Score=49.05 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.1
Q ss_pred hcCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 61 ~~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
......++++|++|+|||+++..+..
T Consensus 198 r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 198 RRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred ccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 35667899999999999999988754
No 477
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.13 E-value=0.032 Score=46.67 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
....+++.|++|+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999998753
No 478
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.11 E-value=0.03 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|||||||++.+.+-.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999998753
No 479
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.10 E-value=0.024 Score=45.94 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.....+++.|++|+|||+++..+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4556899999999999999998875
No 480
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.09 E-value=0.034 Score=46.71 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...|+|+|++|||||+|...|...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998754
No 481
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.05 E-value=0.031 Score=46.67 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+++|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 482
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.04 E-value=0.034 Score=50.00 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|||||||++.+.+-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998754
No 483
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.02 E-value=0.019 Score=46.35 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.7
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...|++.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999988653
No 484
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.99 E-value=0.035 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+|+..+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999999999865
No 485
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.98 E-value=0.053 Score=45.82 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
...+++++|++|+||||+...|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 445799999999999999987643
No 486
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.97 E-value=0.032 Score=42.96 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 024385 66 TIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 66 ~i~ivG~~~~GKSsLi~~l~~ 86 (268)
.|.+.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998854
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.90 E-value=0.038 Score=41.71 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
...-+++.|++|+||||+...|....
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 45579999999999999999987654
No 488
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.87 E-value=0.035 Score=44.17 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
...|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999999998653
No 489
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.81 E-value=0.039 Score=50.31 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCC
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~ 88 (268)
..-.++++|+.|+|||||++.+.+-.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999998753
No 490
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.80 E-value=0.032 Score=46.90 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
No 491
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.78 E-value=0.035 Score=45.72 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 024385 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 65 ~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999987653
No 492
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.76 E-value=0.033 Score=47.15 Aligned_cols=26 Identities=31% Similarity=0.202 Sum_probs=22.5
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
++...+.++|++|+|||||+..+...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999998764
No 493
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.71 E-value=0.038 Score=45.79 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 64 ~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
..-|+|+|++|||||+|...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345889999999999999998653
No 494
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.66 E-value=0.034 Score=47.17 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.....+++.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999988753
No 495
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.66 E-value=0.038 Score=43.74 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=18.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
+..-|++.|++||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567799999999999999998754
No 496
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.65 E-value=0.026 Score=50.81 Aligned_cols=26 Identities=35% Similarity=0.568 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
.+...++++|++|||||||.+.|.+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 35678999999999999999998753
No 497
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.64 E-value=0.28 Score=38.34 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=26.1
Q ss_pred EEEEeCCCCCCCHH-HHHHHHHHHHhcCCccCCCCcEEEEeecCCCCC
Q 024385 145 VFVVDALEFLPNCS-AASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 191 (268)
Q Consensus 145 i~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~piivv~nK~Dl~~ 191 (268)
++.+|=... |. ++...+..+.. .++|+++.+=..|=..
T Consensus 104 vV~IDEaQF---f~~~~v~~l~~la~------~gi~Vi~~GLd~DF~~ 142 (219)
T 3e2i_A 104 VIGIDEVQF---FDDEIVSIVEKLSA------DGHRVIVAGLDMDFRG 142 (219)
T ss_dssp EEEECCGGG---SCTHHHHHHHHHHH------TTCEEEEEEESBCTTS
T ss_pred EEEEechhc---CCHHHHHHHHHHHH------CCCEEEEeeccccccc
Confidence 555665554 33 45666666653 6899999999999654
No 498
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.62 E-value=0.022 Score=46.03 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~ 86 (268)
....+++.|++|+|||+|++.+..
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHH
Confidence 345599999999999999999865
No 499
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.60 E-value=0.06 Score=46.65 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.8
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHHcC
Q 024385 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (268)
Q Consensus 62 ~~~~~i~ivG~~~~GKSsLi~~l~~~ 87 (268)
+...-|++.||||+|||+|++.+.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 45678999999999999999998763
No 500
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.59 E-value=0.044 Score=52.49 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHcCCc
Q 024385 63 KSTTIVLAGLSGSGKTVLFYQLRDGST 89 (268)
Q Consensus 63 ~~~~i~ivG~~~~GKSsLi~~l~~~~~ 89 (268)
+.-.++++|+.|||||||++.+.++..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 455789999999999999999986543
Done!