BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024387
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 110/140 (78%), Gaps = 1/140 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
V+ DVD GKP GR+V+ L DVVPKTAENFRALCT GEKG+GYKG +FHR+I FM Q
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 64
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD
Sbjct: 65 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 224 RHVVFGHVIDGMDVVRKLES 243
+HVVFGHVI+GMDVV+K+ES
Sbjct: 125 KHVVFGHVIEGMDVVKKIES 144
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 110/140 (78%), Gaps = 1/140 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
V+ DVD GKP GR+V+ L DVVPKTAENFRALCT GEKG+GYKG +FHR+I FM Q
Sbjct: 7 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 65
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD
Sbjct: 66 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 125
Query: 224 RHVVFGHVIDGMDVVRKLES 243
+HVVFGHVI+GMDVV+K+ES
Sbjct: 126 KHVVFGHVIEGMDVVKKIES 145
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 110/140 (78%), Gaps = 1/140 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
V+ DVD GKP GR+V+ L DVVPKTAENFRALCT GEKG+GYKG +FHR+I FM Q
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 64
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD
Sbjct: 65 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 224 RHVVFGHVIDGMDVVRKLES 243
+HVVFGHVI+GMDVV+K+ES
Sbjct: 125 KHVVFGHVIEGMDVVKKIES 144
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 110/140 (78%), Gaps = 1/140 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
V+ DVD GKP GR+V+ L DVVPKTAENFRALCT GEKG+GYKG +FHR+I FM Q
Sbjct: 5 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQA 63
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD
Sbjct: 64 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 123
Query: 224 RHVVFGHVIDGMDVVRKLES 243
+HVVFGHVI+GMDVV+K+ES
Sbjct: 124 KHVVFGHVIEGMDVVKKIES 143
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/167 (61%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
VT KVFFDV IG K GRIV+GLFG VVPKT ENF AL T GEKGYGYKG FHR+IKDF
Sbjct: 14 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALAT-GEKGYGYKGSKFHRVIKDF 72
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
MIQ +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI K
Sbjct: 73 MIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPT 132
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 266
WLD +HVVFG VIDGM VV +E T D P C IINSG++ +
Sbjct: 133 WLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDV 179
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/167 (60%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
VT KVFFDV IG K GRIV+GLFG+VVPKT ENF AL T GEKGYGYKG FHR+IKDF
Sbjct: 6 VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALAT-GEKGYGYKGSIFHRVIKDF 64
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
MIQ +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI K
Sbjct: 65 MIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPT 124
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 266
WLD +HVVFG V+DGM VV +E T D P C I+NSG++ +
Sbjct: 125 WLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV 171
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/169 (58%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Query: 99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
KVT +V+FD++IGGKP GRIV+GLFG VPKTA NF L KG GY G FHR+I D
Sbjct: 4 KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKK-PKGEGYPGSKFHRVIAD 62
Query: 159 FMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
FMIQ SIYG F DE+F LKH G G LSMANAG +TNGSQFFI TVKT
Sbjct: 63 FMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKT 122
Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
PWLD RHVVFG +++GMDVVRK+E E D PK I SG + +D
Sbjct: 123 PWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVD 171
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/170 (58%), Positives = 118/170 (69%), Gaps = 9/170 (5%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHR 154
+KVFFD+ IGGK +GRIVM L+ DVVPKTA NFRALCT GE G G +KG FHR
Sbjct: 4 SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCT-GENGIGKSGKPLHFKGSKFHR 62
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
II +FMIQ SIYG F DE+F KH GPGVLSMANAGPNTNGSQFF+C
Sbjct: 63 IIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLC 122
Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
TVKT WLD +HVVFG V++G+DVV+ +ES S++ P C I + G+L
Sbjct: 123 TVKTEWLDGKHVVFGRVVEGLDVVKAVES-NGSQSGKPVKDCMIADCGQL 171
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
+ KVT KV+FD+ IG + GR+V+GLFG VPKT +NF AL T GEKG+GYK FHR+I
Sbjct: 8 RPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALAT-GEKGFGYKDSKFHRVI 66
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
KDFMIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TV
Sbjct: 67 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
KT WLD +HVVFG V++GM+VVRK+E+ +T D P I + G++ ++
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVE 177
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 118/169 (69%), Gaps = 1/169 (0%)
Query: 99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
KVT KV+FD+ IG + GR+V+GLFG VPKT +NF AL T GEKG+GYK FHR+IKD
Sbjct: 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALAT-GEKGFGYKDSKFHRVIKD 68
Query: 159 FMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
FMIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT
Sbjct: 69 FMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 128
Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
WLD +HVVFG V++GM+VVRK+E+ +T D P I + G++ ++
Sbjct: 129 AWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVE 177
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 117/169 (69%), Gaps = 1/169 (0%)
Query: 99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
KVT KV+FD+ IG + GR++ GLFG VPKT +NF AL T GEKG+GYK FHR+IKD
Sbjct: 13 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALAT-GEKGFGYKNSKFHRVIKD 71
Query: 159 FMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
FMIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT
Sbjct: 72 FMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 131
Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
WLD +HVVFG V++GM+VVRK+ES +T D P I + G++ ++
Sbjct: 132 AWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 180
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 117/169 (69%), Gaps = 1/169 (0%)
Query: 99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKD 158
KVT KV+FD+ IG + GR++ GLFG VPKT +NF AL T GEKG+GYK FHR+IKD
Sbjct: 3 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALAT-GEKGFGYKNSKFHRVIKD 61
Query: 159 FMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 218
FMIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT
Sbjct: 62 FMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT 121
Query: 219 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 267
WLD +HVVFG V++GM+VVRK+ES +T D P I + G++ ++
Sbjct: 122 AWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 170
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 114/176 (64%), Gaps = 2/176 (1%)
Query: 89 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYK 148
S +++ Q V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYK
Sbjct: 10 SGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYK 68
Query: 149 GCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 208
G FHRII FM Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNG
Sbjct: 69 GSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNG 128
Query: 209 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
SQFFICT KT WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 129 SQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 183
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/168 (57%), Positives = 115/168 (68%), Gaps = 2/168 (1%)
Query: 97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
Q + +VFFD+ IG AGRIVM L D+VP+TAENFRALCT GE+G+GY C FHR+I
Sbjct: 6 QKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCT-GERGFGYHNCCFHRVI 64
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
FM Q SIYG F+DE+F L+H G GVLSMAN+GPNTNGSQFFICT
Sbjct: 65 PQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTT 124
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
K WLD +HVVFG V+DG +VV+K+ESV S++ K P I GEL
Sbjct: 125 KCDWLDGKHVVFGRVVDGQNVVKKMESV-GSKSGKVKEPVIISRCGEL 171
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 113/168 (67%), Gaps = 2/168 (1%)
Query: 97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
+ +VT KV+FDV I +P GRI +GLFG P T ENFR LCT GE G+GYK FHR+I
Sbjct: 7 EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCT-GEHGFGYKDSIFHRVI 65
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
++FMIQ SIYG F DE+ +KH G LSMANAGPNTNGSQFFI T
Sbjct: 66 QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
TPWLD RHVVFG V+DGMDVV ++E +T+ D P P +I+ SGEL
Sbjct: 125 PTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 113/170 (66%), Gaps = 10/170 (5%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHR 154
+VFFDVDIGG+ GRIV+ LF D+VPKTAENFRALCT GEKG G +KGC FHR
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCT-GEKGIGPTTGKPLHFKGCPFHR 75
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
IIK FMIQ SIYG FEDE+F KH G+LSMANAG NTNGSQFFI
Sbjct: 76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFIT 135
Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
TV TP LD +HVVFG VI GM V + LE+VE + + P C I GEL
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGEL 184
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 117/165 (70%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
VT KV+FD+ IG +P GR+V+GLFG+ VPKT ENF+ L +GE G+GYKG FHR+I++F
Sbjct: 4 VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLA-SGENGFGYKGSIFHRVIRNF 62
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
MIQ SIYG+ F+DE+ +KH G +SMANAGPN+NGSQFF+ T TP
Sbjct: 63 MIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTP 121
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD RHVVFG V++GMDVV+K+E+ +T D PK +I + G L
Sbjct: 122 WLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 61 MCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 59
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 60 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 119
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 120 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 163
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 61 MCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 10 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 68
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 69 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 128
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 129 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 172
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 59
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 60 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTK 119
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 120 WLDGKHVVFGAVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 163
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 112/168 (66%), Gaps = 2/168 (1%)
Query: 97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRII 156
+ +VT KV+FDV I +P GRI +GLFG P T ENFR LCT GE G+GYK FHR+I
Sbjct: 7 EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCT-GEHGFGYKDSIFHRVI 65
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
++FMIQ SIYG F DE+ +KH G LSMANAGPNTNGSQFFI T
Sbjct: 66 QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
TPWLD HVVFG V+DGMDVV ++E +T+ D P P +I+ SGEL
Sbjct: 125 PTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+L+MANAGPNTNGSQFFICT KT
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/163 (56%), Positives = 113/163 (69%), Gaps = 2/163 (1%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMI 161
++V+FDV+ G+P GR+V L+ D+VPKTAENFRALCT GEKG+GY G FHR+I DFM+
Sbjct: 2 SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCT-GEKGFGYAGSPFHRVIPDFML 60
Query: 162 QXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWL 221
Q SIYG F DE+F H PG+LSMANAGPNTNGSQFFI TV PWL
Sbjct: 61 QGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWL 120
Query: 222 DNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
D +HVVFG V+DG D+V+K+ES+ S + K + SGEL
Sbjct: 121 DGKHVVFGEVVDGYDIVKKVESL-GSPSGATKARIVVAKSGEL 162
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FH+II F
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHKIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 121 WLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD HVVFG V +GM++V +E SR I + G+L
Sbjct: 121 WLDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 60
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 61 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTK 120
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD HVVFG V +GM++V +E SR I + G+L
Sbjct: 121 WLDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 6 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 64
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 65 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTK 124
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD HVVFG V +GM++V +E SR I + G+L
Sbjct: 125 WLDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 168
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 184 bits (466), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 116/170 (68%), Gaps = 2/170 (1%)
Query: 94 VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFH 153
+ +A+ +V+ D+ IG KPAGRI M L DVVP TAENFR LCT EKG+G+KG SFH
Sbjct: 4 IAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTH-EKGFGFKGSSFH 62
Query: 154 RIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFI 213
RII FM Q SIYG F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+
Sbjct: 63 RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 122
Query: 214 CTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 263
KT WLD +HVVFG V +G+DV+R++E+ + S+ PK I + GE
Sbjct: 123 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 171
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 184 bits (466), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 109/165 (66%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 59
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
M Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT
Sbjct: 60 MCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 119
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +GM++V ++ SR I + G+L
Sbjct: 120 WLDGKHVVFGKVKEGMNIVEAMKRF-GSRNGKTSKKITIADCGQL 163
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/177 (57%), Positives = 116/177 (65%), Gaps = 16/177 (9%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRI 155
KVFFD+ I K AGRIVM L+ D VPKTAENFRALCT GEKG G YK FHR+
Sbjct: 9 KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCT-GEKGKGRSGKPLHYKSSVFHRV 67
Query: 156 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLK---HVGPGVLSMANAGPNTNGSQFF 212
I +FMIQ SIYG++F DESF K H G G LSMANAGPNTNGSQFF
Sbjct: 68 IPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFF 127
Query: 213 ICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS--GELPLD 267
ICT TPWLD +HVVFG VIDG+DVV+K+E + +S K RI+ S GE+ D
Sbjct: 128 ICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSG---KTRSRIVVSDCGEVAAD 181
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 112/161 (69%), Gaps = 2/161 (1%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQ 162
+V+ D+ IG KPAGRI M L DVVP TAENFR LCT EKG+G+KG SFHRII FM Q
Sbjct: 5 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTH-EKGFGFKGSSFHRIIPQFMCQ 63
Query: 163 XXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 222
SIYG F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+ KT WLD
Sbjct: 64 GGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLD 123
Query: 223 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 263
+HVVFG V +G+DV+R++E+ + S+ PK I + GE
Sbjct: 124 GKHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 163
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 181 bits (458), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 93/161 (57%), Positives = 108/161 (67%), Gaps = 2/161 (1%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMI 161
+ VFFD+ G P G I LF DVVPKTA NFRALCT GEKG+GY G FHR+I DFM+
Sbjct: 2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCT-GEKGFGYAGSHFHRVIPDFML 60
Query: 162 QXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWL 221
Q SIYG+ F DE+F LKH PG+LSMANAGPNTNGSQFFI TV T WL
Sbjct: 61 QGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWL 120
Query: 222 DNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 262
D +HVVFG VIDGM+VV+ +E+ E S + P+ I G
Sbjct: 121 DGKHVVFGEVIDGMNVVKAIEA-EGSGSGKPRSRIEIAKCG 160
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 177 bits (448), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 91/165 (55%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDF 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL T GEKG+GYKG FHRII F
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALST-GEKGFGYKGSCFHRIIPGF 59
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
Q SIYG FEDE+F+LKH GPG+LS ANAGPNTNGSQFFICT KT
Sbjct: 60 XCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTE 119
Query: 220 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
WLD +HVVFG V +G ++V E SR I + G+L
Sbjct: 120 WLDGKHVVFGKVKEGXNIVEAXERF-GSRNGKTSKKITIADCGQL 163
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 113/170 (66%), Gaps = 2/170 (1%)
Query: 94 VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFH 153
+ +A+ +V+ D+ IG KPAGRI L DVVP TAENFR LCT EKG+G+KG SFH
Sbjct: 5 IAKKARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTH-EKGFGFKGSSFH 63
Query: 154 RIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFI 213
RII F Q SIYG F+DE+F+LKH GPG+LS AN+GPNTNGSQFF+
Sbjct: 64 RIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFL 123
Query: 214 CTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 263
KT WLD +HVVFG V +G+DV+R++E+ + S+ PK I + GE
Sbjct: 124 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 172
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 109/169 (64%), Gaps = 4/169 (2%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKG----YGYKGCSFHRI 155
V VFFDV IGG+ GR+ + LF DVVPKTAENFR CT + GYKG +FHR+
Sbjct: 9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRV 68
Query: 156 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 215
IKDFMIQ SIY F DE+F L+H PG+LSMAN+GP+TNG QFFI
Sbjct: 69 IKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITC 128
Query: 216 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
K WLD +HVVFG +IDG+ V+RK+E+V T + PK+P I GE+
Sbjct: 129 SKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 101/160 (63%), Gaps = 8/160 (5%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG-------YKGCSFHRII 156
V+FD+ IG PAGRI M LF D VP TAENFRALCT GEKG G Y G FHRII
Sbjct: 22 VYFDISIGQTPAGRITMELFADKVPITAENFRALCT-GEKGMGQSGKPLCYTGSFFHRII 80
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
FMIQ SIYGS F DE+FV H P +LSMANAGPNTNGSQFFI TV
Sbjct: 81 PQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC 256
PWLD +HVVFG V++GM+VV+ +E + K C
Sbjct: 141 PCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVC 180
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 106/170 (62%), Gaps = 9/170 (5%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHR 154
+ FFD+ I +PAGR+V LF DV PKT ENFR LCT GEKG G YK C FHR
Sbjct: 28 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCT-GEKGTGKSTQKPLHYKSCLFHR 86
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
++KDFM+Q SIYG FEDESF +KH +LSMAN G +TNGSQFFI
Sbjct: 87 VVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFIT 146
Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
T TP LD HVVFG VI G +VVR++E+ +T P RI++ GEL
Sbjct: 147 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 106/170 (62%), Gaps = 9/170 (5%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHR 154
+ FFD+ I +PAGR+V LF DV PKT ENFR LCT GEKG G YK C FHR
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCT-GEKGTGKSTQKPLHYKSCLFHR 69
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
++KDFM+Q SIYG FEDESF +KH +LSMAN G +TNGSQFFI
Sbjct: 70 VVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFIT 129
Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
T TP LD HVVFG VI G +VVR++E+ +T P RI++ GEL
Sbjct: 130 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 167 bits (423), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 1/139 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
VFF++ I KP GRIV L+ + VPKTA+NFR L T G+ G+GYK FHR+I FM+Q
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELAT-GQHGFGYKDSIFHRVIPQFMLQG 63
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
SIYG F DE+F +KH PG+LSMANAG NTNGSQFFI TV T WLD
Sbjct: 64 GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 123
Query: 224 RHVVFGHVIDGMDVVRKLE 242
+HVVFG VI+G+D+VRK+E
Sbjct: 124 KHVVFGEVIEGLDIVRKVE 142
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 167 bits (422), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 1/139 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
VFF++ I KP GRIV L+ + VPKTA+NFR L T G+ G+GYK FHR+I FM+Q
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELAT-GQHGFGYKDSIFHRVIPQFMLQG 64
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
SIYG F DE+F +KH PG+LSMANAG NTNGSQFFI TV T WLD
Sbjct: 65 GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 124
Query: 224 RHVVFGHVIDGMDVVRKLE 242
+HVVFG VI+G+D+VRK+E
Sbjct: 125 KHVVFGEVIEGLDIVRKVE 143
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 107/168 (63%), Gaps = 6/168 (3%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTA---GEKGYG--YKGCSFHRII 156
+KVFFD+ I AGRI+ LF D+ P+T ENFRALCT G +G YK FHRII
Sbjct: 4 SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
FM Q SIYG SF DE+F +KH PG+LSMANAGPNTN SQFFI V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
PWLD +HVVFG VI+GM+VVR++E E +++ Y K I + GEL
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEK-EGAKSGYVKRSVVITDCGEL 170
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHR 154
+ FFD+ I +PAGR+V LF DV PKT ENFR LCT GEKG G YK FHR
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCT-GEKGTGKSTQKPLHYKSXLFHR 69
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
++KDFM+Q SIYG FEDESF +KH +LSMAN G +TNGSQFFI
Sbjct: 70 VVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFIT 129
Query: 215 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
T TP LD HVVFG VI G +VVR++E+ +T P RI++ GEL
Sbjct: 130 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 105/168 (62%), Gaps = 6/168 (3%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTA---GEKGYG--YKGCSFHRII 156
+KVFFD+ I AGRI+ LF D+ P+T ENFRALCT G +G YK FHRII
Sbjct: 4 SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63
Query: 157 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 216
FM Q SIYG SF DE+F +KH PG+LSMANAGPNTN SQF I V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 217 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
PWLD +HVVFG VI+GM+VVR++E E +++ Y K I + GE
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEK-EGAKSGYVKRSVVITDCGEW 170
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/140 (58%), Positives = 96/140 (68%), Gaps = 1/140 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQX 163
VFFDV G+P GRI M LF ++VP+TAENFRALCT GEKG+G+K FHR+I DF+ Q
Sbjct: 9 VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCT-GEKGFGFKNSIFHRVIPDFVCQG 67
Query: 164 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
SIYG FEDE+F +KH GPG+LSMAN G NTN SQF I K LD
Sbjct: 68 GDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDF 127
Query: 224 RHVVFGHVIDGMDVVRKLES 243
+HVVFG V DGMD V+K+ES
Sbjct: 128 KHVVFGFVKDGMDTVKKIES 147
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 107/177 (60%), Gaps = 9/177 (5%)
Query: 96 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------Y 147
+ K +VF DV I G AGRIVM L+ D+ P+T NF LCT G G G Y
Sbjct: 1 MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCT-GMAGTGKISGKPLHY 59
Query: 148 KGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTN 207
KG +FHR+IK+FMIQ SIYG F+DE FV+KH P V+SMAN GPNTN
Sbjct: 60 KGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTN 119
Query: 208 GSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
GSQFFI T P L+N HVVFG V+ G +VV K+E ++T+ + P I+N GEL
Sbjct: 120 GSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 97/153 (63%), Gaps = 7/153 (4%)
Query: 89 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYK 148
SMAK+ + V+FDV + GRIVM L D+VPKTA+NFR LC KG GYK
Sbjct: 21 SMAKEA------SGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCER-PKGEGYK 73
Query: 149 GCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 208
G +FHRII FM+Q SIYG F DE+F LKH G+LSMAN G +TNG
Sbjct: 74 GSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNG 133
Query: 209 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKL 241
SQFFI KT WLD +HVVFG V++GMDVV K+
Sbjct: 134 SQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKI 166
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 105/168 (62%), Gaps = 7/168 (4%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEK----GYGYKGCSFHRIIKDF 159
VF D+++G G+ LF ++VPKT+ENFR CT K GYK FHR+IK+F
Sbjct: 62 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 121
Query: 160 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 219
MIQ +SIYG F+DE+F +KH G+LSMAN+GPNTNG QFFI T K
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181
Query: 220 WLDNRHVVFGHVIDG--MDVVRKLESVETSRTDY-PKVPCRIINSGEL 264
WLD ++VVFG +ID + +++K+E+V + Y PK+P ++ GEL
Sbjct: 182 WLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 103/167 (61%), Gaps = 9/167 (5%)
Query: 106 FDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYG--------YKGCSFHRIIK 157
FD++I +P GRI+ LF D+ PKT +NF LC+ GEKG G YKG +FHR++K
Sbjct: 24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCS-GEKGLGKTTGKKLCYKGSTFHRVVK 82
Query: 158 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 217
+FMIQ SIYG F+DE+F+LKH +LSMAN G +TNGSQFFI T
Sbjct: 83 NFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKP 142
Query: 218 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 264
P LD HVVFG VI G +V+ ++E+++T P R+I+ G L
Sbjct: 143 APHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 103/173 (59%), Gaps = 13/173 (7%)
Query: 102 TKVFFDVD-----IGGKPAGRIVMGLFGDVVPKTAENFRALCT--AGEKGYGYKGCSFHR 154
++VFFDV+ GRIV LF VPKTA+NFR LC AGE GY+ +FHR
Sbjct: 3 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE---GYRESTFHR 59
Query: 155 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 214
II +FMIQ SIYG F DE+F KH G+LSMANAGPNTNGSQFFI
Sbjct: 60 IIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFIT 119
Query: 215 TVKTPWLDNRHVVFGHVID--GMDVVRKLESV-ETSRTDYPKVPCRIINSGEL 264
T T WLD +HVVFG V D VV+++E++ +S + +I+N GEL
Sbjct: 120 TAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G I LF PKT ENF C GY Y G +FHRIIK FMIQ
Sbjct: 31 GDIHTKLFPVECPKTVENF---CVHSRNGY-YNGHTFHRIIKGFMIQTGDPTGTGMGGE- 85
Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
SI+G FEDE L+H P LSMANAG NTNGSQFFI V TPWLDN+H VFG V G
Sbjct: 86 SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKG 145
Query: 235 MDVVRKLESVETS-RTDYPKVPCRIIN 260
M+VV+++ +V+ + +TD P IIN
Sbjct: 146 MEVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 85/147 (57%), Gaps = 6/147 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G IV+ L+ PKT +NF L +GY Y G FHRIIKDFMIQ
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA---RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA- 75
Query: 176 SIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
SIYG FEDE LK G G+L+MANAGP+TNGSQFF+ T WLD +H +FG V G
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135
Query: 235 MDVVRKLESVETSRTDYPKVPCRIINS 261
+ +V ++ VET+ D P +II +
Sbjct: 136 IGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 85/147 (57%), Gaps = 6/147 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G IV+ L+ PKT +NF L +GY Y G FHRIIKDFMIQ
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA---RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA- 75
Query: 176 SIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
SIYG FEDE LK G G+L+MANAGP+TNGSQFF+ T WLD +H +FG V G
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135
Query: 235 MDVVRKLESVETSRTDYPKVPCRIINS 261
+ +V ++ VET+ D P +II +
Sbjct: 136 IGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 85/147 (57%), Gaps = 6/147 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G IV+ L+ PKT +NF L +GY Y G FHRIIKDFMIQ
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA---RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA- 75
Query: 176 SIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
SIYG FEDE LK G G+L+MANAGP+TNGSQFF+ T WLD +H +FG V G
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135
Query: 235 MDVVRKLESVETSRTDYPKVPCRIINS 261
+ +V ++ VET+ D P +II +
Sbjct: 136 IGMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 79/146 (54%), Gaps = 6/146 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G I + LF KT +NF G Y C FHR+IK FM+Q
Sbjct: 15 GDIHISLFYKECKKTVQNFSVHSINGY----YNNCIFHRVIKHFMVQTGDPSGDGTGGE- 69
Query: 176 SIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
SI+G+ FEDE F L H P ++SMAN GPNTNGSQFFI TV PWLD +H VFG V G
Sbjct: 70 SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQG 129
Query: 235 MDVVRKLESVETSRTDYPKVPCRIIN 260
+V +E V T + D P +I+N
Sbjct: 130 SKIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXX 174
G I + +F + PKT ENF ALC + Y GC FHR IK FM+Q
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASNY----YNGCIFHRNIKGFMVQTGDPTGTGRGGN 64
Query: 175 ISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID 233
SI+G FEDE S LKH GV+SMAN GPNTNGSQFFI K P LD ++ VFG VID
Sbjct: 65 -SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVID 123
Query: 234 GMDVVRKLESVETSRTDY 251
G++ + +LE + + Y
Sbjct: 124 GLETLDELEKLPVNEKTY 141
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 80/137 (58%), Gaps = 6/137 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G I + +F + PKT ENF ALC + Y GC FHR IK FM+Q
Sbjct: 16 GDIKIEVFCERTPKTCENFLALCASNY----YNGCIFHRNIKGFMVQTGDPTGTGRGGN- 70
Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
SI+G FEDE S LKH GV+SMAN GPNTNGSQFFI K P LD ++ VFG VIDG
Sbjct: 71 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDG 130
Query: 235 MDVVRKLESVETSRTDY 251
++ + +LE + + Y
Sbjct: 131 LETLDELEKLPVNEKTY 147
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G + + L D+ PKT ENF LC K + Y G FHR I++F+IQ
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC----KKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGE- 83
Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
S +G F+DE L H G G+LSMAN+GPN+N SQFFI +LD +H +FG V+ G
Sbjct: 84 SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGG 143
Query: 235 MDVVRKLESVETS-RTDYPKVPCRI 258
DV+ +E+VE+ +TD PK RI
Sbjct: 144 FDVLTAMENVESDPKTDRPKEEIRI 168
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G + L+ PKT NF LC E G+ Y FHR+I +F+IQ
Sbjct: 48 GDFEVELYWYHSPKTCLNFYTLC---EMGF-YDNTIFHRVIPNFVIQGGDPTGTGKGGK- 102
Query: 176 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 234
SIYG FEDE + LKH G G+LSM+N GPNTN SQFFI P LD +H +F V
Sbjct: 103 SIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKN 162
Query: 235 MDVVRKLESVETSRTDYPKVPCRII 259
M + + SV+T+ T+ P +I+
Sbjct: 163 MTCIENIASVQTTATNKPIFDLKIL 187
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 72/156 (46%), Gaps = 16/156 (10%)
Query: 116 GRIVMGLFGDVVPKTAENFRALC-----------TAGEKGYGYKGCSFHRIIKDFMIQXX 164
G I + LFG+ PKT NF L + G G Y G FHR+I+ FMIQ
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 165 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 224
+ F E L+ P +L+MANAGP TNGSQFFI KTP L+ R
Sbjct: 93 DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 225 HVVFGHVIDG--MDVVRKLESVETSRTDYPKVPCRI 258
H +FG VID VV + T D P P I
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G + LF PK +NF AL +G YK FH+ IK F+IQ
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSASGY----YKNTIFHKNIKGFIIQGGDPTGTGKGGE- 80
Query: 176 SIYGSSFEDESF-VLKHVGPGVLSMANAG----PNTNGSQFFICTVKTPWLDNRHVVFGH 230
SIYG F+DE + LK+ G+LSMA+ G PNTNGSQFFI P L+ +V+FG
Sbjct: 81 SIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGK 140
Query: 231 VIDGMDVVRKLESVETSRTDYP 252
+IDG + + LE+ + ++ P
Sbjct: 141 LIDGFETLNTLENCPSDKSHKP 162
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 16/143 (11%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G + + L D+ P+ ++F LC + FHR I++FMIQ
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVKY----FDDTIFHRCIRNFMIQGGRAELRQPSKKK 71
Query: 176 SIY-----------GSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 223
+ G+ FEDE L H G GVLSMAN G ++N S+FFI L+N
Sbjct: 72 EVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNN 131
Query: 224 RHVVFGHVIDGMDVVRKLESVET 246
+H +FG V+ G+DV+R+ E +ET
Sbjct: 132 KHTIFGRVVGGLDVLRQWEKLET 154
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXX 174
AG I + L+ PK NF LC + Y Y FHR++ F++Q
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLCL---EAY-YDNTIFHRVVPGFIVQGGDPTGTGSGGE 88
Query: 175 ISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI- 232
SIYG+ F+DE L+ G+++MANAG + NGSQFF + L+N+H +FG V
Sbjct: 89 -SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTG 147
Query: 233 DGMDVVRKLESVETSRTDYPKVPCRI 258
D + + +L V+ + P P +I
Sbjct: 148 DTVYNMLRLSEVDIDDDERPHNPHKI 173
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 71/175 (40%), Gaps = 47/175 (26%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G I + LF D P+TA NF G Y G FHR+I FMIQ
Sbjct: 9 GTITLKLFADKAPETAANFEQYVKDGH----YDGTIFHRVIDGFMIQ------------- 51
Query: 176 SIYGSSFEDESFVLKHVGPGVLSMANAG---------------PNTNGSQFFICTVKTPW 220
G FE K + + AN G P++ +QFFI +
Sbjct: 52 ---GGGFE-PGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAF 107
Query: 221 LDNR--------HVVFGHVIDGMDVVRKLESVET-SRTDYPKVPCR--IINSGEL 264
LD+ + VFG V++G DVV +++SV T SR + VP II E+
Sbjct: 108 LDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVIIEKAEI 162
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 66/151 (43%), Gaps = 20/151 (13%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G IV+ F D P+T +NF C G Y FHR+I FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREG----FYNNTIFHRVINGFMIQGGGFEPGMKQKAT 64
Query: 176 SIYGSSFEDESFVLKHVGPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR--------HV 226
++E+ G L+MA P++ +QFFI V +L+ +
Sbjct: 65 K---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121
Query: 227 VFGHVIDGMDVVRKLESVETSRT----DYPK 253
VF V+DGMDVV K++ V T R+ D PK
Sbjct: 122 VFAEVVDGMDVVDKIKGVATGRSGMHQDVPK 152
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 20/151 (13%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G IV+ F D P+T +NF C G Y FHR+I FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREG----FYNNTIFHRVINGFMIQGGGFEPGMKQKAT 64
Query: 176 SIYGSSFEDESFVLKHVGPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR--------HV 226
++E+ G L+MA P++ +QFFI V +L+ +
Sbjct: 65 K---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121
Query: 227 VFGHVIDGMDVVRKLESVETSRT----DYPK 253
VF V+DGMD V K++ V T R+ D PK
Sbjct: 122 VFAEVVDGMDEVDKIKGVATGRSGMHQDVPK 152
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 21/157 (13%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 175
G + + L+ P NF LC +GY Y FHR++KDF++Q
Sbjct: 31 GDLDVELWARECPLACRNFVQLCL---EGY-YVNTIFHRVVKDFIVQGGDPTGTGRGGAD 86
Query: 176 SIY-GSSFEDESF-VLKHVGPGVLSMANAGPN--------------TNGSQFFICTVKTP 219
+ + G F+ E+ LK G++ +AN G + TNG+QFFI +
Sbjct: 87 TTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARAD 146
Query: 220 WLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVP 255
L+N + +FG V + + K +E + D P P
Sbjct: 147 VLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTP 183
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 45/175 (25%)
Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXX 174
AG I + L P + +NF +G Y +FHR+I FMIQ
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVNSGF----YNNTTFHRVIPGFMIQ------------ 56
Query: 175 ISIYGSSFEDESFVLKHVGPGVLSMANAG-PNTNG--------------SQFFICTVKTP 219
G F E K P + + A+ G NT G SQFFI
Sbjct: 57 ----GGGFT-EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNA 111
Query: 220 WLDNR-----HVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIINSGELP 265
+LD+ + VFG V+ GMDV K+ V T + P P I+++ LP
Sbjct: 112 FLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 166
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 45/175 (25%)
Query: 115 AGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXX 174
AG I + L P + +NF +G Y +FHR+I FMIQ
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVNSGF----YNNTTFHRVIPGFMIQ------------ 56
Query: 175 ISIYGSSFEDESFVLKHVGPGVLSMANAG-PNTNG--------------SQFFICTVKTP 219
G F E K P + + A+ G NT G SQFFI
Sbjct: 57 ----GGGFT-EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNA 111
Query: 220 WLDNR-----HVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIINSGELP 265
+LD+ + VFG V+ GMDV K+ V T + P P I+++ LP
Sbjct: 112 FLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 44/142 (30%)
Query: 128 PKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESF 187
PKT ENF G Y G FHR+I FMIQ G FE
Sbjct: 25 PKTVENFLNYVKKGH----YDGTIFHRVINGFMIQ----------------GGGFE-PGL 63
Query: 188 VLKHVGPGVLSMANAG---------------PNTNGSQFFICTVKTPWLDNR-------- 224
K + + AN G P++ +QFFI +L++
Sbjct: 64 KQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWG 123
Query: 225 HVVFGHVIDGMDVVRKLESVET 246
+ VFG V++G D+V K+++V+T
Sbjct: 124 YAVFGKVVEGQDIVDKIKAVKT 145
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 39/176 (22%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTA----------GEKGYG------ 146
+V+ D+ + + GR+ + LF D P ENF L G+ Y
Sbjct: 16 RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75
Query: 147 YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSS-----FEDESFVLKHVGPGVLSMAN 201
Y+GC FH ++ + I ++Y F D + H G+LS+
Sbjct: 76 YEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLSLV- 132
Query: 202 AGPNTN--GSQFFICTVKTPW-----------LDNRHVVFGHVIDGMDVVRKLESV 244
P T+ G++++ T LD VV G V G+DV+ K+ S+
Sbjct: 133 --PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSM 186
>pdb|2V5I|A Chain A, Structure Of The Receptor-binding Protein Of Bacteriophage
Det7: A Podoviral Tailspike In A Myovirus
Length = 559
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 190 KHVGPGVLSMANAGPNTNGSQFFICTVKTPWL------DNRHVVFGHVIDGMDVVRKLES 243
K +G G L N GP + +Q F+ + TPW+ D + + ++ K+E
Sbjct: 68 KFIGDGALIFNNMGPGSVINQPFMESKTTPWVIFPWDADGKWITDAALVAATLKQSKIEG 127
Query: 244 VETSRTDYPKVP 255
+ D+ K P
Sbjct: 128 YQPGVNDWVKFP 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,320,322
Number of Sequences: 62578
Number of extensions: 282636
Number of successful extensions: 619
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 78
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)