BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024389
MPRSFASLFSRKKSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLH
HFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEE
EEEDDDDSLDNRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRI
AEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALF
LEGLAQFLVGLRDREVLGELNRSKIPIS

High Scoring Gene Products

Symbol, full name Information P value
INP1
AT4G22600 		protein from Arabidopsis thaliana 9.9e-55

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024389
        (268 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2127525 - symbol:INP1 "AT4G22600" species:3702...   565  9.9e-55   1


>TAIR|locus:2127525 [details] [associations]
            symbol:INP1 "AT4G22600" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0010584 "pollen exine formation"
            evidence=IMP] EMBL:CP002687 GO:GO:0010584 EMBL:AL161557
            EMBL:AL033545 InterPro:IPR025422 Pfam:PF14144 EMBL:DQ459193
            IPI:IPI00517580 PIR:T05454 RefSeq:NP_193991.1 UniGene:At.65416
            ProteinModelPortal:Q9SUV9 EnsemblPlants:AT4G22600.1 GeneID:828356
            KEGG:ath:AT4G22600 TAIR:At4g22600 InParanoid:Q9SUV9 OMA:LETPFLF
            PhylomeDB:Q9SUV9 ProtClustDB:CLSN2685817 ArrayExpress:Q9SUV9
            Genevestigator:Q9SUV9 Uniprot:Q9SUV9
        Length = 273

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 121/276 (43%), Positives = 163/276 (59%)

Query:     1 MPRSFASLFSRKKSQTLAFKDYYTNWFNTLQKTXXXXXXXXXXXXXXXXXXXXHVDLLLH 60
             MP SF   FSRKK     F D+Y +W  TL +                     +VDL+L 
Sbjct:     1 MPFSF---FSRKKPSR-RFNDFYEDWSKTLTENCLPLLRQSLSSAASASVLSSNVDLVLR 56

Query:    61 HFLSYYDALDSAATQGNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFXXXXXXXX 120
             H + YY+ LD AA    +P LL+PSWRNSLE PFLFLGD+HPYL TNL+RSF        
Sbjct:    57 HLVLYYETLDLAADHNTIPYLLFPSWRNSLETPFLFLGDIHPYLLTNLLRSFIDRENQDS 116

Query:   121 XXXXXXXXXX--NRPWQVLMAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVG 178
                         N+P ++ MAW++    L+ +I+QIEC +RLMVP L+ R++K Q  FV 
Sbjct:   117 DDEDEETSLDLVNQPLKMTMAWKDPSDELVKRIDQIECTMRLMVPGLMDRMRKTQRSFVA 176

Query:   179 RIAEDWVA-FERQSDEELKGVIG-------EAMKEEMDDMVSVFVDANRLRKSVIAEIVG 230
             R++E WV+ ++    ++L   +        EA K EM+++VS+FVDANRLRKSVI +IVG
Sbjct:   177 RVSESWVSSYQVGKKKKLTATVATASTSVDEAAKIEMEELVSIFVDANRLRKSVIMDIVG 236

Query:   231 ALSVYQAALFLEGLAQFLVGLRDREVLGELNRSKIP 266
             A S +QAALFLEGL QFL G +D+ +L +     +P
Sbjct:   237 ATSEHQAALFLEGLCQFLAGFKDQILLQDFEILSLP 272


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      268       230   0.00083  113 3  11 22  0.49    32
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  181 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.05u 0.20s 19.25t   Elapsed:  00:00:01
  Total cpu time:  19.05u 0.20s 19.25t   Elapsed:  00:00:01
  Start:  Fri May 10 04:04:25 2013   End:  Fri May 10 04:04:26 2013

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