BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024389
         (268 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XG3|A Chain A, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
           Mutant From Escherichia Coli In Complex With The
           Reaction Product, Mg(Ii)-Pyruvate And Succinate
 pdb|1XG3|B Chain B, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
           Mutant From Escherichia Coli In Complex With The
           Reaction Product, Mg(Ii)-Pyruvate And Succinate
 pdb|1XG3|C Chain C, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
           Mutant From Escherichia Coli In Complex With The
           Reaction Product, Mg(Ii)-Pyruvate And Succinate
 pdb|1XG3|D Chain D, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
           Mutant From Escherichia Coli In Complex With The
           Reaction Product, Mg(Ii)-Pyruvate And Succinate
 pdb|1XG4|A Chain A, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
           Mutant From Escherichia Coli In Complex With The
           Inhibitor Isocitrate
 pdb|1XG4|B Chain B, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
           Mutant From Escherichia Coli In Complex With The
           Inhibitor Isocitrate
 pdb|1XG4|C Chain C, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
           Mutant From Escherichia Coli In Complex With The
           Inhibitor Isocitrate
 pdb|1XG4|D Chain D, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
           Mutant From Escherichia Coli In Complex With The
           Inhibitor Isocitrate
          Length = 295

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 146 NLMSQIEQIE--CGLRLMVPALIG---------RIKK--VQSGFVGRIAEDWVAFERQSD 192
           ++++ I +I   C L L+V A IG         R  K  +++G  G   ED V  +R   
Sbjct: 65  DVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGH 124

Query: 193 EELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSV 234
              K ++    KEEM D +   VDA      VI     AL+V
Sbjct: 125 RPNKAIVS---KEEMVDRIRAAVDAKTDPDFVIMARTDALAV 163


>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
          Length = 972

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 15/82 (18%)

Query: 178 GRIAEDWVAFE-------RQSDEELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVG 230
           G++ E ++AFE       R+  E     I E M++ M +         RL+K  +A +VG
Sbjct: 383 GQVREQYIAFEGVIPNVERRYRETSSDYIREQMEKYMAEQPCPTCQGYRLKKESLAVLVG 442

Query: 231 --------ALSVYQAALFLEGL 244
                   A+SV +A  F +GL
Sbjct: 443 GKHIGEVTAMSVTEALAFFDGL 464


>pdb|1MUM|A Chain A, Structure Of The 2-Methylisocitrate Lyase (Prpb) From
           Escherichia Coli
 pdb|1MUM|B Chain B, Structure Of The 2-Methylisocitrate Lyase (Prpb) From
           Escherichia Coli
 pdb|1OQF|A Chain A, Crystal Structure Of The 2-Methylisocitrate Lyase
 pdb|1OQF|B Chain B, Crystal Structure Of The 2-Methylisocitrate Lyase
          Length = 295

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 146 NLMSQIEQIE--CGLRLMVPALIG---------RIKK--VQSGFVGRIAEDWVAFERQSD 192
           ++++ I +I   C L L+V A IG         R  K  +++G  G   ED V  +R   
Sbjct: 65  DVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGH 124

Query: 193 EELKGVIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSV 234
              K ++    KEEM D +   VDA      VI     AL+V
Sbjct: 125 RPNKAIVS---KEEMVDRIRAAVDAKTDPDFVIMARTDALAV 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,339,946
Number of Sequences: 62578
Number of extensions: 202244
Number of successful extensions: 747
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 5
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)