BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024389
         (268 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q39234|TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1
          Length = 384

 Score = 38.9 bits (89), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 39/238 (16%)

Query: 18  AFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDSAATQGN 77
           AF+  YT+W    Q   +  I  +L +      L   VD  L+H+ + +  + + A + +
Sbjct: 169 AFEMEYTHWLEE-QNRRVSEIRTALQAHIGDIELKMLVDSCLNHYANLF-RMKADAAKAD 226

Query: 78  LPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEEEEEDDDDSLDNRPWQVL 137
           +  L+   WR S E  F ++G   P    N+V  +++  ++                Q L
Sbjct: 227 VFFLMSGMWRTSTERFFQWIGGFRPSELLNVVMPYVEPLTD----------------QQL 270

Query: 138 MAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKG 197
           +  RN+ ++     E +  GL            K+Q G V  IA      E  +      
Sbjct: 271 LEVRNLQQSSQQAEEALSQGL-----------DKLQQGLVESIAIQIKVVESVNH----- 314

Query: 198 VIGEAMKEEMDDMVSV--FVD-ANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLR 252
             G  M   M+++ ++  FV+ A+ LR+  + ++   L+  QAA  L  L ++   LR
Sbjct: 315 --GAPMASAMENLQALESFVNQADHLRQQTLQQMSKILTTRQAARGLLALGEYFHRLR 370


>sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1
          Length = 368

 Score = 35.0 bits (79), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 91/235 (38%), Gaps = 34/235 (14%)

Query: 18  AFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDSAATQGN 77
           +F+  Y++W    Q   +  +  +L S  S   L   V+  L+H+ + +  + S A + +
Sbjct: 154 SFEMEYSHWLQE-QSRRVSELRTALQSHISDIELKMLVESCLNHYANLFQ-MKSDAAKAD 211

Query: 78  LPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEEEEEDDDDSLDNRPWQVL 137
           +  L+   WR S E  F ++G   P    N+V  +L   +++               Q+L
Sbjct: 212 VFYLISGMWRTSTERFFQWIGGFRPSELLNVVMPYLQPLTDQ---------------QIL 256

Query: 138 MAWRNVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKG 197
                  +NL    +Q E        AL   I K+Q      I  D V         +  
Sbjct: 257 E-----VRNLQQSSQQAE-------DALSQGIDKLQQSLAESIVIDAVIESTHYPTHMAA 304

Query: 198 VIGEAMKEEMDDMVSVFVDANRLRKSVIAEIVGALSVYQAALFLEGLAQFLVGLR 252
            I     E +  +      A+ LR+  + ++   L+  Q+A  L  L ++L  LR
Sbjct: 305 AI-----ENLQALEGFVNQADHLRQQTLQQMAKILTTRQSARGLLALGEYLHRLR 354


>sp|P23923|HBP1B_WHEAT Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1
          Length = 332

 Score = 32.7 bits (73), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 17  LAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDSAATQG 76
           LAF   Y  W     + +  L   ++++ +  T L S V+ ++ H+   +    +AA + 
Sbjct: 112 LAFDTEYARWLEEHNRQVNEL-RAAVNAHAGDTELRSVVEKIMSHYDEIFKQKGNAA-KA 169

Query: 77  NLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLVRSFLDEESEEE 120
           ++  +L   W+   E  FL+LG   P     L+ + L+  +E++
Sbjct: 170 DVFHVLSGMWKTPAERCFLWLGGFRPSELLKLLSTQLEPLTEQQ 213


>sp|Q31HC3|Y854_THICR UPF0753 protein Tcr_0854 OS=Thiomicrospira crunogena (strain XCL-2)
           GN=Tcr_0854 PE=3 SV=1
          Length = 823

 Score = 31.6 bits (70), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 26/160 (16%)

Query: 103 YLFTNLVRSFLDEESEEEEEEDDDDSLDN-RPWQVLMAWRNVCKNLMSQIEQIECGLRLM 161
           Y   NL R +L EE E     +  D +D+ R  +  MAWR+   + +SQ     C     
Sbjct: 108 YTVDNLER-YLLEEDEHTHWHNVSDFVDSGRDRKYKMAWRDEITHQISQF----CADFFR 162

Query: 162 VPALIGRIKKVQSGFVGRIAEDWVAFERQSDEELKGVIGEAMKEEMDDMVSVFVDANRLR 221
           +    G   K   G       +W+A  RQ D+ ++ ++GE      D +   F+D     
Sbjct: 163 LKDSQGTFSKTYQGLY----HEWLATTRQ-DKGIEILMGE------DGLTEHFMDLPESS 211

Query: 222 KSVIAEIVGALSV-------YQAALFLE--GLAQFLVGLR 252
           +S++AE +  L V       Y  AL L+  G A ++  LR
Sbjct: 212 ESLLAEALVGLRVPDSQIADYAHALLLDANGWASWVAYLR 251


>sp|Q9SUF5|SCL26_ARATH Scarecrow-like protein 26 OS=Arabidopsis thaliana GN=SCL26 PE=2
           SV=1
          Length = 483

 Score = 31.2 bits (69), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 29  TLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDSAATQGN 77
           TL   L+ L+H+ +    +Q  LY  +D LLH F + +D+L++  +  N
Sbjct: 336 TLNPKLVTLVHEEVGLMGNQGFLYRFMD-LLHQFSAIFDSLEAGLSIAN 383


>sp|P03375|ENV_HV1B1 Envelope glycoprotein gp160 OS=Human immunodeficiency virus type 1
           group M subtype B (isolate BH10) GN=env PE=1 SV=1
          Length = 856

 Score = 30.8 bits (68), Expect = 9.5,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 105 FTNLVRSFLDEESEEEEEEDDDDSLDNRPWQVLMAWRNVCK-----NLMSQIEQIECGLR 159
           +T+L+ S + EES+ ++E+++ + L+   W  L  W N+        L   I     GLR
Sbjct: 638 YTSLIHSLI-EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLR 696

Query: 160 LMVPALIGRIKKVQSGF 176
           + V A++  + +V+ G+
Sbjct: 697 I-VFAVLSVVNRVRQGY 712


>sp|P04624|ENV_HV1H3 Envelope glycoprotein gp160 OS=Human immunodeficiency virus type 1
           group M subtype B (isolate HXB3) GN=env PE=1 SV=3
          Length = 856

 Score = 30.8 bits (68), Expect = 9.7,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 105 FTNLVRSFLDEESEEEEEEDDDDSLDNRPWQVLMAWRNVCK-----NLMSQIEQIECGLR 159
           +T+L+ S + EES+ ++E+++ + L+   W  L  W N+        L   I     GLR
Sbjct: 638 YTSLIHSLI-EESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLR 696

Query: 160 LMVPALIGRIKKVQSGF 176
           + V A++  + +V+ G+
Sbjct: 697 I-VFAVLSVVNRVRQGY 712


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,420,568
Number of Sequences: 539616
Number of extensions: 3896309
Number of successful extensions: 36979
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 36648
Number of HSP's gapped (non-prelim): 264
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)