Query 024389
Match_columns 268
No_of_seqs 107 out of 219
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 07:25:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024389.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024389hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b33n_ d.30.1.1 (N:) Allophyc 20.3 18 0.0013 24.1 1.3 13 23-35 33-45 (67)
2 d1olma1 a.5.3.1 (A:1-75) Super 20.3 37 0.0027 22.3 3.1 18 142-159 7-24 (75)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 18.3 87 0.0064 23.0 5.2 31 143-173 85-115 (129)
4 d1ojha_ a.214.1.1 (A:) Phycobi 17.5 92 0.0067 19.7 4.3 28 219-246 8-35 (52)
5 d1uuja_ a.221.1.1 (A:) Lissenc 16.5 50 0.0037 22.5 3.0 20 231-250 1-20 (76)
6 d1k78a1 a.4.1.5 (A:19-81) Pax- 15.4 77 0.0056 20.6 3.7 24 218-241 17-40 (63)
7 d1t33a2 a.121.1.1 (A:89-220) P 14.9 1.4E+02 0.0099 21.7 5.6 67 4-71 29-97 (132)
8 d1r7ha_ c.47.1.1 (A:) Glutared 13.6 26 0.0019 22.5 0.8 25 76-109 49-73 (74)
9 d1z8ua1 a.7.11.1 (A:2-91) Alph 13.2 68 0.0049 22.4 3.0 26 45-70 30-55 (90)
10 d1zbdb_ g.50.1.1 (B:) Effector 12.5 1.2E+02 0.0086 21.6 4.4 38 142-179 2-39 (124)
No 1
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.31 E-value=18 Score=24.14 Aligned_cols=13 Identities=38% Similarity=0.831 Sum_probs=11.0
Q ss_pred HHHHHHHhhhchh
Q 024389 23 YTNWFNTLQKTLL 35 (268)
Q Consensus 23 Y~~W~~eq~~~l~ 35 (268)
|+.|+.||++...
T Consensus 33 y~nWf~EQQrI~K 45 (67)
T d1b33n_ 33 YENWFREQQRIQK 45 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8899999998654
No 2
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.26 E-value=37 Score=22.27 Aligned_cols=18 Identities=0% Similarity=0.135 Sum_probs=15.1
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 024389 142 NVCKNLMSQIEQIECGLR 159 (268)
Q Consensus 142 ~LS~~Ql~~I~~Lq~~t~ 159 (268)
.||+.|...|.+|+..+.
T Consensus 7 elt~~q~~~l~elr~~l~ 24 (75)
T d1olma1 7 DLSPRQKEALAKFRENVQ 24 (75)
T ss_dssp BCCHHHHHHHHHHHHHHG
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 399999999999987653
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.28 E-value=87 Score=22.97 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024389 143 VCKNLMSQIEQIECGLRLMVPALIGRIKKVQ 173 (268)
Q Consensus 143 LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ 173 (268)
-.+.|+.+|..|+.+.+.+|..+.+.+.+..
T Consensus 85 see~Q~~~i~~Le~E~~~~~~el~~~v~e~e 115 (129)
T d1ykhb1 85 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 115 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999988877666543
No 4
>d1ojha_ a.214.1.1 (A:) Phycobilisome degradation protein NblA {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=17.55 E-value=92 Score=19.71 Aligned_cols=28 Identities=29% Similarity=0.191 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 024389 219 RLRKSVIAEIVGALSVYQAALFLEGLAQ 246 (268)
Q Consensus 219 ~LR~~TL~~v~~iLTp~QAA~fL~A~~e 246 (268)
+..+++....|+-+|.-||-+||+-+-+
T Consensus 8 qF~lrsf~~qV~~mS~EQAqdfLv~Lyk 35 (52)
T d1ojha_ 8 QFSIRSFATQVQNMSHDQAKDFLVKLYE 35 (52)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4667888899999999999999987644
No 5
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.55 E-value=50 Score=22.54 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=17.0
Q ss_pred hcCHHHHHHHHHHHHHHHHh
Q 024389 231 ALSVYQAALFLEGLAQFLVG 250 (268)
Q Consensus 231 iLTp~QAA~fL~A~~e~~~~ 250 (268)
|||++|+.+-=-|+.+|+..
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~~ 20 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLRS 20 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 78999999988888888854
No 6
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.37 E-value=77 Score=20.64 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHH
Q 024389 218 NRLRKSVIAEIVGALSVYQAALFL 241 (268)
Q Consensus 218 D~LR~~TL~~v~~iLTp~QAA~fL 241 (268)
.+||.+.+.-+.+=++++|||+=|
T Consensus 17 ~DLR~Riv~~~~~G~s~r~aA~rf 40 (63)
T d1k78a1 17 DVVRQRIVELAHQGVRPCDISRQL 40 (63)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHh
Confidence 469999998888889999999854
No 7
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=14.94 E-value=1.4e+02 Score=21.70 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=48.1
Q ss_pred chhhhhccc--chhhHHHHHHHHHHHHHhhhchhhHHhccccCCCChhhHHHHHHHHHHhHHHHHHhhhh
Q 024389 4 SFASLFSRK--KSQTLAFKDYYTNWFNTLQKTLLPLIHKSLSSSSSQTLLYSHVDLLLHHFLSYYDALDS 71 (268)
Q Consensus 4 ~~~~~~~~~--~~~~~~F~~~Y~~W~~eq~~~l~eLr~a~~~~~~sd~~L~~LV~~~l~Hy~~yy~~K~~ 71 (268)
++..||.|- +| ...|+..|++=+.=.+..+..|.........+|..++...-.++...-.|+-.+..
T Consensus 29 ~~~~l~~RE~~~P-T~a~~~l~~~~i~P~~~~l~~ll~~~~G~~~~d~~~~~~~~sivGq~l~f~var~~ 97 (132)
T d1t33a2 29 NLSKFISREQLSP-TSAYQLVHEQVIDPLHTHLTRLVAAYTGCDANDTRMILHTHALLGEVLAFRLGKET 97 (132)
T ss_dssp HHHHHHHHHHHSC-CHHHHHHHHHTHHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHHHccCc-hHHHHHHHHHHhhhHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566662 44 46899999999999999888888776555566777776776777777777766653
No 8
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=13.55 E-value=26 Score=22.45 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=16.6
Q ss_pred CCcccccCCCCCCchhhHHHhhcCCCchhHHHHH
Q 024389 76 GNLPELLYPSWRNSLEVPFLFLGDLHPYLFTNLV 109 (268)
Q Consensus 76 ~DV~~l~sp~W~splEr~fLWiGG~RPS~ll~Ll 109 (268)
.-|+.++-+. -+||||+|-.+=+|+
T Consensus 49 ~tvP~i~i~g---------~~igGf~~d~l~~L~ 73 (74)
T d1r7ha_ 49 VQAPVVEVDG---------EHWSGFRPERIKQLQ 73 (74)
T ss_dssp BCCCEEEETT---------EEEESCCHHHHHHHH
T ss_pred CCcCEEEECC---------EEEeCCCHhHHHHhh
Confidence 4567665543 268999998766553
No 9
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.19 E-value=68 Score=22.36 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=23.6
Q ss_pred CCChhhHHHHHHHHHHhHHHHHHhhh
Q 024389 45 SSSQTLLYSHVDLLLHHFLSYYDALD 70 (268)
Q Consensus 45 ~~sd~~L~~LV~~~l~Hy~~yy~~K~ 70 (268)
.+|+.+...+|+.-++-|-+||..|-
T Consensus 30 ~iseedMvtvV~DWvn~Yinyy~~~~ 55 (90)
T d1z8ua1 30 LVSEEDMVTVVEDWMNFYINYYRQQV 55 (90)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47899999999999999999998875
No 10
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.45 E-value=1.2e+02 Score=21.57 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=28.3
Q ss_pred CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhh
Q 024389 142 NVCKNLMSQIEQIECGLRLMVPALIGRIKKVQSGFVGR 179 (268)
Q Consensus 142 ~LS~~Ql~~I~~Lq~~t~~~E~aLs~~ma~lQ~slad~ 179 (268)
+||+++...|.++-++-...+..-.+++.++.+.+.+.
T Consensus 2 ~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~ 39 (124)
T d1zbdb_ 2 ELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETM 39 (124)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48988888887776776766666677777777777654
Done!