Query 024390
Match_columns 268
No_of_seqs 179 out of 1534
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3079 Uridylate kinase/adeny 100.0 7.3E-36 1.6E-40 247.2 21.5 174 74-249 4-193 (195)
2 PLN02459 probable adenylate ki 100.0 6.2E-36 1.3E-40 264.2 22.0 175 77-251 28-253 (261)
3 PLN02674 adenylate kinase 100.0 7.7E-36 1.7E-40 262.2 21.9 168 78-247 31-243 (244)
4 PRK14529 adenylate kinase; Pro 100.0 1.4E-33 3.1E-38 245.0 20.7 166 79-247 1-222 (223)
5 PRK13808 adenylate kinase; Pro 100.0 1.5E-33 3.2E-38 256.9 21.0 171 79-251 1-195 (333)
6 PRK14531 adenylate kinase; Pro 100.0 4.3E-33 9.4E-38 235.6 21.5 167 78-247 2-182 (183)
7 PRK14526 adenylate kinase; Pro 100.0 6.6E-33 1.4E-37 239.6 21.5 170 79-250 1-210 (211)
8 PRK14528 adenylate kinase; Pro 100.0 9.8E-33 2.1E-37 234.3 21.4 166 79-246 2-185 (186)
9 TIGR01351 adk adenylate kinase 100.0 1.3E-32 2.9E-37 237.4 21.5 167 80-247 1-209 (210)
10 PRK14532 adenylate kinase; Pro 100.0 1.6E-32 3.5E-37 232.4 21.6 168 79-248 1-186 (188)
11 PTZ00088 adenylate kinase 1; P 100.0 1E-31 2.2E-36 234.8 21.2 170 77-246 5-228 (229)
12 PRK00279 adk adenylate kinase; 100.0 1.4E-31 3.1E-36 231.7 21.0 169 79-249 1-214 (215)
13 PLN02200 adenylate kinase fami 100.0 3E-31 6.5E-36 232.8 23.0 172 77-251 42-226 (234)
14 PRK02496 adk adenylate kinase; 100.0 4.3E-31 9.2E-36 223.1 21.6 169 78-248 1-183 (184)
15 PRK14527 adenylate kinase; Pro 100.0 7.6E-31 1.7E-35 223.1 22.1 168 77-247 5-190 (191)
16 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 8E-31 1.7E-35 220.7 21.0 165 80-247 1-182 (183)
17 PF00406 ADK: Adenylate kinase 100.0 1.8E-31 3.9E-36 218.7 16.6 142 83-226 1-151 (151)
18 PRK14530 adenylate kinase; Pro 100.0 3.6E-30 7.9E-35 222.9 21.6 168 77-250 2-214 (215)
19 COG0563 Adk Adenylate kinase a 100.0 2.8E-29 6.1E-34 211.5 18.7 162 79-247 1-177 (178)
20 TIGR01360 aden_kin_iso1 adenyl 100.0 9.8E-28 2.1E-32 202.0 22.7 170 78-248 3-186 (188)
21 cd01428 ADK Adenylate kinase ( 100.0 2.4E-28 5.3E-33 206.9 18.1 158 80-239 1-194 (194)
22 KOG3078 Adenylate kinase [Nucl 100.0 4.3E-28 9.4E-33 209.7 17.1 172 77-251 14-226 (235)
23 PLN02842 nucleotide kinase 100.0 1.1E-27 2.4E-32 228.1 19.8 167 82-251 1-204 (505)
24 PRK13974 thymidylate kinase; P 99.8 3.1E-18 6.7E-23 148.1 15.2 172 77-249 2-206 (212)
25 PRK03839 putative kinase; Prov 99.8 1.4E-17 3.1E-22 140.0 14.6 148 79-250 1-154 (180)
26 PRK13973 thymidylate kinase; P 99.7 1.1E-16 2.4E-21 138.5 15.5 169 77-250 2-207 (213)
27 PRK08356 hypothetical protein; 99.7 1.6E-16 3.6E-21 135.5 15.0 161 78-249 5-192 (195)
28 PRK01184 hypothetical protein; 99.7 1.2E-15 2.7E-20 128.5 19.2 161 79-249 2-178 (184)
29 COG0703 AroK Shikimate kinase 99.7 1.3E-15 2.8E-20 126.7 15.0 155 78-250 2-169 (172)
30 PRK13949 shikimate kinase; Pro 99.7 4.5E-15 9.7E-20 124.1 16.3 151 79-246 2-168 (169)
31 PLN02924 thymidylate kinase 99.7 6.3E-15 1.4E-19 128.3 16.9 177 68-250 6-204 (220)
32 PRK06217 hypothetical protein; 99.6 4.1E-15 8.9E-20 125.6 14.6 151 78-249 1-179 (183)
33 COG0125 Tmk Thymidylate kinase 99.6 2.7E-14 5.9E-19 123.0 17.0 171 77-250 2-204 (208)
34 COG1102 Cmk Cytidylate kinase 99.6 2.9E-15 6.2E-20 122.4 10.0 161 79-252 1-175 (179)
35 PRK13975 thymidylate kinase; P 99.6 1.1E-13 2.4E-18 117.4 18.6 162 78-251 2-192 (196)
36 PRK08233 hypothetical protein; 99.6 3.5E-14 7.6E-19 118.7 14.9 165 77-250 2-178 (182)
37 PRK13948 shikimate kinase; Pro 99.6 1.8E-13 4E-18 115.8 16.1 157 77-249 9-175 (182)
38 PRK00698 tmk thymidylate kinas 99.6 2.5E-13 5.4E-18 115.8 16.5 170 77-249 2-202 (205)
39 PRK08118 topology modulation p 99.5 6.2E-14 1.4E-18 117.0 12.3 95 79-199 2-96 (167)
40 PRK13947 shikimate kinase; Pro 99.5 1.8E-13 3.9E-18 113.7 14.6 153 79-250 2-169 (171)
41 TIGR00041 DTMP_kinase thymidyl 99.5 1.9E-13 4.1E-18 116.0 15.0 163 77-243 2-195 (195)
42 PRK03731 aroL shikimate kinase 99.5 1.9E-13 4.1E-18 113.8 14.5 152 79-249 3-170 (171)
43 PHA02530 pseT polynucleotide k 99.5 3.6E-14 7.9E-19 128.3 10.4 153 78-238 2-171 (300)
44 PRK13946 shikimate kinase; Pro 99.5 6.8E-13 1.5E-17 112.2 16.2 162 75-250 7-177 (184)
45 cd01672 TMPK Thymidine monopho 99.5 1.2E-12 2.6E-17 110.4 17.4 163 79-248 1-199 (200)
46 PRK00625 shikimate kinase; Pro 99.5 3.9E-13 8.5E-18 112.9 13.1 158 79-247 1-171 (173)
47 COG1936 Predicted nucleotide k 99.5 9.3E-13 2E-17 109.0 14.7 145 79-249 1-156 (180)
48 PRK14021 bifunctional shikimat 99.5 5.9E-13 1.3E-17 130.0 16.0 164 74-252 2-179 (542)
49 PRK07933 thymidylate kinase; V 99.5 9.7E-13 2.1E-17 114.0 14.2 160 79-247 1-211 (213)
50 KOG3347 Predicted nucleotide k 99.5 1.3E-12 2.8E-17 105.5 13.2 148 76-248 5-165 (176)
51 PRK00131 aroK shikimate kinase 99.5 1.4E-12 3E-17 108.0 13.4 156 77-249 3-171 (175)
52 PRK04182 cytidylate kinase; Pr 99.4 5.2E-12 1.1E-16 105.3 16.3 160 79-250 1-174 (180)
53 PRK14730 coaE dephospho-CoA ki 99.4 2.4E-12 5.2E-17 110.0 14.5 157 79-248 2-193 (195)
54 PRK13976 thymidylate kinase; P 99.4 4.5E-12 9.7E-17 109.6 16.3 171 79-250 1-202 (209)
55 PRK00081 coaE dephospho-CoA ki 99.4 3.8E-12 8.3E-17 108.6 15.5 158 79-248 3-192 (194)
56 PRK06762 hypothetical protein; 99.4 4.5E-12 9.7E-17 105.0 15.0 152 78-249 2-164 (166)
57 PRK05057 aroK shikimate kinase 99.4 4.1E-12 8.8E-17 106.5 14.8 153 78-249 4-171 (172)
58 PLN02199 shikimate kinase 99.4 9.1E-12 2E-16 112.0 17.6 160 77-250 101-289 (303)
59 TIGR02173 cyt_kin_arch cytidyl 99.4 7.8E-12 1.7E-16 103.4 15.4 155 79-247 1-170 (171)
60 PRK08154 anaerobic benzoate ca 99.4 2.6E-12 5.6E-17 117.3 13.0 164 72-250 127-302 (309)
61 PF02223 Thymidylate_kin: Thym 99.4 3.7E-12 7.9E-17 107.5 12.7 158 83-243 1-186 (186)
62 PRK04040 adenylate kinase; Pro 99.4 1E-11 2.2E-16 105.6 15.4 159 78-247 2-187 (188)
63 TIGR01313 therm_gnt_kin carboh 99.4 9.1E-12 2E-16 102.8 12.7 153 81-248 1-162 (163)
64 PF01202 SKI: Shikimate kinase 99.4 1.8E-11 3.9E-16 101.0 13.8 143 87-248 1-158 (158)
65 PRK14734 coaE dephospho-CoA ki 99.4 1.6E-11 3.5E-16 105.4 13.6 158 79-249 2-194 (200)
66 PRK12339 2-phosphoglycerate ki 99.3 7.1E-12 1.5E-16 107.4 9.4 163 77-247 2-195 (197)
67 PRK07261 topology modulation p 99.3 8.6E-12 1.9E-16 104.4 9.0 96 79-199 1-96 (171)
68 cd02030 NDUO42 NADH:Ubiquinone 99.3 1E-10 2.2E-15 101.7 15.7 166 80-245 1-217 (219)
69 PF13671 AAA_33: AAA domain; P 99.3 2.8E-11 6.1E-16 97.2 9.6 108 80-200 1-116 (143)
70 PRK13951 bifunctional shikimat 99.3 5.6E-11 1.2E-15 114.7 13.2 144 79-243 1-155 (488)
71 PRK14731 coaE dephospho-CoA ki 99.3 1.4E-10 3E-15 100.1 14.2 161 77-249 4-202 (208)
72 PLN02422 dephospho-CoA kinase 99.3 1.5E-10 3.3E-15 101.4 14.4 159 79-250 2-195 (232)
73 KOG3327 Thymidylate kinase/ade 99.3 4.4E-10 9.6E-15 93.9 16.3 163 76-251 3-197 (208)
74 PRK05541 adenylylsulfate kinas 99.2 2.3E-10 5E-15 95.7 14.3 156 77-251 6-174 (176)
75 COG3265 GntK Gluconate kinase 99.2 1.3E-10 2.9E-15 93.8 12.2 155 84-250 1-160 (161)
76 TIGR00152 dephospho-CoA kinase 99.2 9.8E-11 2.1E-15 99.2 11.9 152 80-244 1-187 (188)
77 cd00227 CPT Chloramphenicol (C 99.2 1.8E-10 4E-15 96.4 13.2 161 78-247 2-174 (175)
78 PRK10078 ribose 1,5-bisphospho 99.2 4E-10 8.7E-15 95.3 15.3 155 78-250 2-177 (186)
79 cd00464 SK Shikimate kinase (S 99.2 8.5E-11 1.8E-15 95.5 10.6 106 81-200 2-110 (154)
80 PRK09825 idnK D-gluconate kina 99.2 1.2E-10 2.6E-15 98.0 11.5 158 78-250 3-169 (176)
81 TIGR03574 selen_PSTK L-seryl-t 99.2 3E-10 6.6E-15 100.4 14.0 151 80-249 1-169 (249)
82 PTZ00451 dephospho-CoA kinase; 99.2 4.3E-10 9.3E-15 99.3 14.5 159 79-251 2-209 (244)
83 COG0283 Cmk Cytidylate kinase 99.2 2.1E-09 4.5E-14 92.2 17.3 164 78-248 4-218 (222)
84 PF13207 AAA_17: AAA domain; P 99.2 2.5E-11 5.4E-16 94.9 5.1 106 80-199 1-107 (121)
85 PRK14738 gmk guanylate kinase; 99.2 1.4E-10 3.1E-15 99.8 10.2 165 75-253 10-198 (206)
86 smart00072 GuKc Guanylate kina 99.2 1.5E-10 3.2E-15 97.9 9.6 158 78-250 2-183 (184)
87 PRK03333 coaE dephospho-CoA ki 99.2 4.8E-10 1E-14 105.7 13.7 164 79-253 2-196 (395)
88 cd02021 GntK Gluconate kinase 99.2 3.3E-10 7.1E-15 92.1 10.8 112 80-202 1-118 (150)
89 COG0237 CoaE Dephospho-CoA kin 99.2 8.4E-10 1.8E-14 94.7 13.7 159 78-251 2-194 (201)
90 TIGR02322 phosphon_PhnN phosph 99.1 2.1E-09 4.5E-14 90.0 15.6 155 79-249 2-178 (179)
91 PRK11545 gntK gluconate kinase 99.1 5.9E-10 1.3E-14 92.6 11.9 151 84-249 1-160 (163)
92 KOG3354 Gluconate kinase [Carb 99.1 6.5E-10 1.4E-14 90.5 11.4 155 77-249 11-188 (191)
93 PRK14732 coaE dephospho-CoA ki 99.1 9.4E-10 2E-14 94.2 12.6 156 81-248 2-189 (196)
94 PRK06547 hypothetical protein; 99.1 2.4E-10 5.3E-15 95.9 8.4 142 76-222 13-157 (172)
95 PRK13477 bifunctional pantoate 99.1 9.6E-10 2.1E-14 106.2 13.6 41 76-116 282-322 (512)
96 PRK14733 coaE dephospho-CoA ki 99.1 1.4E-09 3E-14 93.6 13.0 163 77-250 5-199 (204)
97 cd02022 DPCK Dephospho-coenzym 99.1 1E-09 2.2E-14 92.4 12.0 114 80-199 1-139 (179)
98 cd02020 CMPK Cytidine monophos 99.1 3E-10 6.4E-15 91.4 7.6 102 80-201 1-102 (147)
99 cd01673 dNK Deoxyribonucleosid 99.1 4E-09 8.7E-14 89.3 14.4 151 80-236 1-189 (193)
100 PRK00889 adenylylsulfate kinas 99.1 2E-09 4.3E-14 90.0 12.1 159 77-250 3-171 (175)
101 PRK00023 cmk cytidylate kinase 99.1 9.7E-09 2.1E-13 89.7 16.2 38 78-115 4-41 (225)
102 PRK05537 bifunctional sulfate 99.0 2.2E-09 4.8E-14 105.4 13.1 161 76-251 390-564 (568)
103 PF01121 CoaE: Dephospho-CoA k 99.0 2.7E-09 5.8E-14 90.2 11.9 115 79-201 1-142 (180)
104 TIGR00017 cmk cytidylate kinas 99.0 3.6E-09 7.8E-14 92.0 12.7 39 78-116 2-40 (217)
105 PRK00300 gmk guanylate kinase; 99.0 2.6E-08 5.6E-13 85.1 16.4 166 77-257 4-192 (205)
106 PRK11860 bifunctional 3-phosph 99.0 7.5E-09 1.6E-13 103.6 14.0 165 77-249 441-655 (661)
107 PRK12338 hypothetical protein; 99.0 2.6E-08 5.6E-13 90.9 15.8 173 77-251 3-206 (319)
108 PRK09518 bifunctional cytidyla 99.0 8.2E-09 1.8E-13 104.2 13.9 38 79-116 2-39 (712)
109 PRK05480 uridine/cytidine kina 98.9 1.9E-08 4E-13 86.5 13.1 167 76-248 4-207 (209)
110 TIGR00455 apsK adenylylsulfate 98.9 3.5E-08 7.5E-13 83.1 13.1 155 76-247 16-184 (184)
111 PRK12269 bifunctional cytidyla 98.9 1.4E-08 3E-13 103.7 12.3 42 75-116 31-72 (863)
112 PRK03846 adenylylsulfate kinas 98.9 4.7E-08 1E-12 83.5 13.4 159 76-251 22-194 (198)
113 KOG3220 Similar to bacterial d 98.9 1.1E-07 2.3E-12 80.8 15.0 159 79-249 2-194 (225)
114 TIGR03263 guanyl_kin guanylate 98.9 2E-08 4.3E-13 84.0 10.3 156 78-248 1-179 (180)
115 TIGR01663 PNK-3'Pase polynucle 98.8 3.8E-08 8.2E-13 95.6 12.5 98 75-201 366-467 (526)
116 KOG3877 NADH:ubiquinone oxidor 98.8 6.4E-07 1.4E-11 79.5 18.5 166 76-246 69-294 (393)
117 TIGR00235 udk uridine kinase. 98.8 6.9E-08 1.5E-12 83.0 12.3 39 75-113 3-44 (207)
118 PRK14737 gmk guanylate kinase; 98.8 1.3E-07 2.9E-12 80.2 13.5 158 77-250 3-185 (186)
119 COG1428 Deoxynucleoside kinase 98.8 7.5E-08 1.6E-12 82.5 11.8 31 77-107 3-33 (216)
120 PRK05416 glmZ(sRNA)-inactivati 98.8 1.8E-07 4E-12 84.6 14.7 142 77-249 5-160 (288)
121 PRK06696 uridine kinase; Valid 98.8 5.9E-08 1.3E-12 84.5 10.1 39 76-114 20-63 (223)
122 PRK07667 uridine kinase; Provi 98.8 2.5E-08 5.4E-13 85.0 7.6 139 78-221 17-178 (193)
123 PRK04220 2-phosphoglycerate ki 98.7 6.5E-07 1.4E-11 81.2 17.0 167 77-250 91-291 (301)
124 PHA03132 thymidine kinase; Pro 98.7 1.4E-07 3.1E-12 92.1 12.0 123 78-200 257-420 (580)
125 PF07931 CPT: Chloramphenicol 98.7 1.9E-07 4.1E-12 78.4 10.8 156 78-247 1-173 (174)
126 PF13238 AAA_18: AAA domain; P 98.7 2.6E-08 5.6E-13 77.9 4.9 106 81-200 1-110 (129)
127 cd02027 APSK Adenosine 5'-phos 98.7 2.7E-07 5.8E-12 75.5 11.0 104 81-199 2-114 (149)
128 PRK05506 bifunctional sulfate 98.7 2.5E-07 5.5E-12 92.3 12.4 157 77-249 459-628 (632)
129 COG2019 AdkA Archaeal adenylat 98.6 2.9E-06 6.2E-11 70.3 15.7 162 78-248 4-187 (189)
130 PF01583 APS_kinase: Adenylyls 98.6 4.9E-07 1.1E-11 74.6 10.9 110 77-200 1-118 (156)
131 cd02024 NRK1 Nicotinamide ribo 98.6 1.2E-07 2.6E-12 80.6 7.2 37 80-116 1-38 (187)
132 PRK12337 2-phosphoglycerate ki 98.6 4.7E-06 1E-10 79.5 18.2 168 76-250 253-462 (475)
133 COG4088 Predicted nucleotide k 98.6 1.2E-06 2.6E-11 75.0 12.4 108 79-199 2-119 (261)
134 PF06414 Zeta_toxin: Zeta toxi 98.6 5.2E-07 1.1E-11 77.1 10.4 116 76-203 13-142 (199)
135 COG0572 Udk Uridine kinase [Nu 98.6 4.4E-07 9.5E-12 78.5 9.8 143 76-223 6-177 (218)
136 COG0194 Gmk Guanylate kinase [ 98.5 2.7E-06 5.8E-11 71.7 13.8 157 77-250 3-183 (191)
137 COG0529 CysC Adenylylsulfate k 98.5 9.8E-07 2.1E-11 73.7 10.8 164 76-252 21-194 (197)
138 cd02019 NK Nucleoside/nucleoti 98.5 1.9E-07 4.2E-12 66.3 5.7 23 80-102 1-23 (69)
139 COG0645 Predicted kinase [Gene 98.5 2.7E-06 5.8E-11 70.5 12.5 113 79-200 2-122 (170)
140 PTZ00301 uridine kinase; Provi 98.5 1.2E-06 2.5E-11 75.9 10.6 37 79-115 4-47 (210)
141 cd02023 UMPK Uridine monophosp 98.5 3E-06 6.5E-11 72.1 12.7 35 80-114 1-38 (198)
142 PF08433 KTI12: Chromatin asso 98.4 3.1E-06 6.8E-11 75.9 12.6 105 79-199 2-116 (270)
143 PLN02165 adenylate isopentenyl 98.4 3.1E-06 6.7E-11 77.8 12.2 37 76-112 41-77 (334)
144 TIGR03575 selen_PSTK_euk L-ser 98.4 1.6E-06 3.6E-11 80.0 9.7 34 81-114 2-41 (340)
145 cd02028 UMPK_like Uridine mono 98.3 1.2E-06 2.7E-11 73.8 6.7 36 80-115 1-41 (179)
146 PF00625 Guanylate_kin: Guanyl 98.3 1.1E-05 2.3E-10 68.0 12.4 157 78-249 2-182 (183)
147 PRK05439 pantothenate kinase; 98.3 7.7E-06 1.7E-10 74.7 11.9 39 76-114 84-129 (311)
148 COG2074 2-phosphoglycerate kin 98.3 2.6E-05 5.7E-10 68.6 14.2 166 76-251 87-289 (299)
149 cd02025 PanK Pantothenate kina 98.3 4.3E-06 9.4E-11 72.8 9.1 34 80-113 1-41 (220)
150 PF03668 ATP_bind_2: P-loop AT 98.3 2.9E-05 6.4E-10 69.7 14.2 138 79-249 2-156 (284)
151 PRK07429 phosphoribulokinase; 98.2 3.2E-06 6.9E-11 77.9 7.4 38 76-113 6-46 (327)
152 PRK09270 nucleoside triphospha 98.2 1.4E-05 2.9E-10 69.9 11.0 45 53-103 14-58 (229)
153 PHA00729 NTP-binding motif con 98.2 1.1E-05 2.4E-10 70.4 9.8 105 79-199 18-136 (226)
154 COG4639 Predicted kinase [Gene 98.2 2.4E-05 5.3E-10 64.1 11.1 107 79-199 3-114 (168)
155 PF01591 6PF2K: 6-phosphofruct 98.2 5.7E-05 1.2E-09 65.9 14.2 149 76-234 10-196 (222)
156 TIGR00554 panK_bact pantothena 98.2 1.9E-05 4.1E-10 71.6 11.1 38 76-113 60-104 (290)
157 PF00485 PRK: Phosphoribulokin 98.1 1.8E-05 3.8E-10 67.3 9.3 25 80-104 1-25 (194)
158 PLN02772 guanylate kinase 98.1 5E-05 1.1E-09 71.2 12.7 162 77-251 134-320 (398)
159 PLN02318 phosphoribulokinase/u 98.1 6.4E-05 1.4E-09 73.8 12.8 36 77-112 64-100 (656)
160 PRK05800 cobU adenosylcobinami 98.1 3E-06 6.6E-11 70.9 3.3 37 79-115 2-40 (170)
161 PRK12724 flagellar biosynthesi 98.0 0.00016 3.4E-09 68.6 14.2 106 77-192 222-344 (432)
162 COG1660 Predicted P-loop-conta 98.0 0.00034 7.3E-09 61.9 15.1 136 79-249 2-157 (286)
163 PLN02348 phosphoribulokinase 97.9 4.7E-05 1E-09 71.4 9.2 28 76-103 47-74 (395)
164 PRK06761 hypothetical protein; 97.9 0.00019 4.2E-09 64.8 12.3 33 78-110 3-35 (282)
165 cd02026 PRK Phosphoribulokinas 97.9 2.6E-05 5.6E-10 70.2 6.5 34 80-113 1-37 (273)
166 PF00004 AAA: ATPase family as 97.9 8.6E-06 1.9E-10 63.7 2.9 33 81-113 1-35 (132)
167 PRK15453 phosphoribulokinase; 97.8 9.3E-05 2E-09 66.6 9.2 39 76-114 3-46 (290)
168 PF13189 Cytidylate_kin2: Cyti 97.8 0.00021 4.5E-09 60.2 10.6 113 80-200 1-132 (179)
169 PRK09169 hypothetical protein; 97.8 4.9E-05 1.1E-09 82.8 8.1 107 77-199 2109-2217(2316)
170 TIGR02881 spore_V_K stage V sp 97.8 0.0001 2.3E-09 65.5 8.7 26 77-102 41-66 (261)
171 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00015 3.3E-09 70.8 9.7 141 52-199 196-369 (802)
172 PRK00091 miaA tRNA delta(2)-is 97.7 4.2E-05 9.1E-10 69.9 4.0 36 77-112 3-38 (307)
173 TIGR02640 gas_vesic_GvpN gas v 97.6 0.00067 1.4E-08 60.5 11.1 29 79-107 22-50 (262)
174 COG3709 Uncharacterized compon 97.6 0.0028 6E-08 52.6 13.5 150 77-250 4-183 (192)
175 PTZ00322 6-phosphofructo-2-kin 97.6 0.00046 9.9E-09 69.5 10.9 33 77-109 214-246 (664)
176 cd00071 GMPK Guanosine monopho 97.6 0.00036 7.7E-09 56.2 8.3 23 81-103 2-24 (137)
177 smart00382 AAA ATPases associa 97.6 6.3E-05 1.4E-09 58.1 3.3 28 78-105 2-29 (148)
178 CHL00181 cbbX CbbX; Provisiona 97.6 0.00026 5.6E-09 64.1 7.7 27 76-102 57-83 (287)
179 PF13401 AAA_22: AAA domain; P 97.6 0.00029 6.3E-09 55.2 7.0 82 77-166 3-96 (131)
180 PF01745 IPT: Isopentenyl tran 97.5 0.00011 2.3E-09 63.5 4.7 111 79-195 2-130 (233)
181 PF13521 AAA_28: AAA domain; P 97.5 4.4E-05 9.6E-10 62.8 2.3 27 80-107 1-27 (163)
182 PHA02575 1 deoxynucleoside mon 97.5 7.9E-05 1.7E-09 64.8 3.8 39 79-117 1-39 (227)
183 COG1618 Predicted nucleotide k 97.5 9E-05 1.9E-09 61.2 3.8 41 77-117 4-44 (179)
184 PLN02840 tRNA dimethylallyltra 97.5 0.0001 2.3E-09 69.8 4.4 36 76-111 19-54 (421)
185 PRK12377 putative replication 97.5 0.0025 5.5E-08 56.5 12.4 107 79-207 102-222 (248)
186 PF13173 AAA_14: AAA domain 97.4 0.00098 2.1E-08 52.7 8.9 36 78-113 2-41 (128)
187 KOG3308 Uncharacterized protei 97.4 0.00045 9.8E-09 59.0 7.1 161 78-247 4-202 (225)
188 TIGR00390 hslU ATP-dependent p 97.4 0.00014 3E-09 68.9 4.2 34 77-110 46-79 (441)
189 PHA03136 thymidine kinase; Pro 97.4 0.0065 1.4E-07 56.8 15.0 25 77-101 35-59 (378)
190 smart00763 AAA_PrkA PrkA AAA d 97.4 9E-05 2E-09 68.9 2.7 28 77-104 77-104 (361)
191 COG1072 CoaA Panthothenate kin 97.4 0.00047 1E-08 61.6 7.0 29 75-103 79-107 (283)
192 cd02029 PRK_like Phosphoribulo 97.4 0.0019 4E-08 57.9 10.7 35 80-114 1-40 (277)
193 PF07728 AAA_5: AAA domain (dy 97.4 0.00013 2.9E-09 58.2 3.0 26 81-106 2-27 (139)
194 PLN02748 tRNA dimethylallyltra 97.4 0.00016 3.5E-09 69.6 4.1 36 76-111 20-55 (468)
195 PF05729 NACHT: NACHT domain 97.4 0.00026 5.7E-09 57.3 4.7 24 80-103 2-25 (166)
196 PRK05201 hslU ATP-dependent pr 97.4 0.00021 4.5E-09 67.7 4.6 34 77-110 49-82 (443)
197 TIGR00174 miaA tRNA isopenteny 97.3 0.00014 3.1E-09 65.8 3.2 31 81-111 2-32 (287)
198 PF05496 RuvB_N: Holliday junc 97.3 0.00018 3.8E-09 62.8 3.4 29 79-107 51-79 (233)
199 KOG0744 AAA+-type ATPase [Post 97.3 0.00035 7.6E-09 63.7 5.4 29 77-105 176-204 (423)
200 KOG1532 GTPase XAB1, interacts 97.3 0.016 3.4E-07 52.1 15.3 45 72-116 13-62 (366)
201 TIGR02880 cbbX_cfxQ probable R 97.3 0.0012 2.6E-08 59.6 8.3 25 78-102 58-82 (284)
202 PRK07952 DNA replication prote 97.2 0.0057 1.2E-07 54.2 12.0 107 80-207 101-221 (244)
203 PRK08099 bifunctional DNA-bind 97.2 0.00037 8.1E-09 66.0 4.1 32 76-107 217-248 (399)
204 PRK08116 hypothetical protein; 97.2 0.0078 1.7E-07 54.0 12.3 36 80-115 116-156 (268)
205 KOG0739 AAA+-type ATPase [Post 97.1 0.0063 1.4E-07 55.3 11.4 48 68-117 158-207 (439)
206 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00051 1.1E-08 55.2 4.1 29 77-105 21-49 (133)
207 COG2256 MGS1 ATPase related to 97.1 0.0017 3.6E-08 60.9 7.8 31 79-109 49-79 (436)
208 COG1223 Predicted ATPase (AAA+ 97.1 0.0056 1.2E-07 54.6 10.6 33 77-109 150-182 (368)
209 PF03029 ATP_bind_1: Conserved 97.1 0.0004 8.7E-09 61.2 3.5 22 83-104 1-22 (238)
210 TIGR01650 PD_CobS cobaltochela 97.1 0.00038 8.3E-09 64.0 3.4 30 79-108 65-94 (327)
211 KOG0730 AAA+-type ATPase [Post 97.1 0.0036 7.9E-08 61.8 10.0 41 77-117 467-509 (693)
212 cd00009 AAA The AAA+ (ATPases 97.1 0.00056 1.2E-08 53.3 3.8 25 78-102 19-43 (151)
213 PRK14974 cell division protein 97.0 0.009 2E-07 55.3 11.6 26 77-102 139-164 (336)
214 cd00544 CobU Adenosylcobinamid 97.0 0.0017 3.8E-08 54.2 6.2 24 81-104 2-25 (169)
215 TIGR01526 nadR_NMN_Atrans nico 97.0 0.00066 1.4E-08 62.6 3.9 30 78-107 162-191 (325)
216 COG4185 Uncharacterized protei 97.0 0.023 4.9E-07 47.2 12.4 39 78-116 2-42 (187)
217 PF06745 KaiC: KaiC; InterPro 97.0 0.00068 1.5E-08 58.7 3.8 28 72-100 14-41 (226)
218 COG0324 MiaA tRNA delta(2)-iso 97.0 0.00078 1.7E-08 61.4 4.1 35 78-112 3-37 (308)
219 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0012 2.7E-08 57.8 5.2 28 72-100 16-43 (237)
220 PRK05342 clpX ATP-dependent pr 97.0 0.00079 1.7E-08 64.0 4.2 32 78-109 108-139 (412)
221 TIGR00064 ftsY signal recognit 96.9 0.008 1.7E-07 54.1 10.3 27 76-102 70-96 (272)
222 COG1222 RPT1 ATP-dependent 26S 96.9 0.0015 3.3E-08 60.3 5.6 49 72-122 181-231 (406)
223 PRK00771 signal recognition pa 96.9 0.0041 8.8E-08 59.6 8.7 27 76-102 93-119 (437)
224 KOG1384 tRNA delta(2)-isopente 96.9 0.0099 2.1E-07 54.4 10.4 35 77-111 6-40 (348)
225 PRK03992 proteasome-activating 96.9 0.00083 1.8E-08 63.4 3.7 38 78-115 165-204 (389)
226 KOG0738 AAA+-type ATPase [Post 96.9 0.0098 2.1E-07 55.7 10.5 135 80-257 247-383 (491)
227 PF03266 NTPase_1: NTPase; In 96.9 0.00084 1.8E-08 56.0 3.3 23 80-102 1-23 (168)
228 KOG0635 Adenosine 5'-phosphosu 96.9 0.0047 1E-07 50.7 7.3 156 76-253 29-204 (207)
229 PF13245 AAA_19: Part of AAA d 96.9 0.0012 2.5E-08 47.9 3.5 24 79-102 11-35 (76)
230 PLN02796 D-glycerate 3-kinase 96.9 0.00096 2.1E-08 61.8 3.8 38 76-113 98-140 (347)
231 PRK04328 hypothetical protein; 96.9 0.0015 3.3E-08 57.8 5.0 29 72-101 18-46 (249)
232 CHL00195 ycf46 Ycf46; Provisio 96.8 0.001 2.2E-08 64.5 3.8 32 78-109 259-290 (489)
233 PLN00020 ribulose bisphosphate 96.8 0.0011 2.4E-08 61.9 3.8 41 77-117 147-189 (413)
234 KOG0731 AAA+-type ATPase conta 96.8 0.00069 1.5E-08 68.2 2.6 35 81-115 347-383 (774)
235 COG0466 Lon ATP-dependent Lon 96.8 0.00095 2.1E-08 66.4 3.4 36 76-111 348-385 (782)
236 TIGR01242 26Sp45 26S proteasom 96.8 0.0012 2.6E-08 61.6 4.0 32 78-109 156-187 (364)
237 COG3896 Chloramphenicol 3-O-ph 96.8 0.021 4.5E-07 47.3 10.6 163 77-248 22-204 (205)
238 PF10662 PduV-EutP: Ethanolami 96.8 0.001 2.2E-08 54.1 3.0 23 79-101 2-24 (143)
239 TIGR00382 clpX endopeptidase C 96.8 0.0013 2.8E-08 62.5 4.0 30 78-107 116-145 (413)
240 PTZ00454 26S protease regulato 96.8 0.0013 2.8E-08 62.4 3.9 32 78-109 179-210 (398)
241 TIGR00959 ffh signal recogniti 96.7 0.016 3.5E-07 55.4 11.3 26 77-102 98-123 (428)
242 TIGR00635 ruvB Holliday juncti 96.7 0.0015 3.3E-08 59.0 4.1 28 78-105 30-57 (305)
243 PRK09087 hypothetical protein; 96.7 0.0014 3E-08 57.3 3.6 35 79-113 45-79 (226)
244 PHA02244 ATPase-like protein 96.7 0.0012 2.5E-08 61.8 3.3 35 79-113 120-154 (383)
245 PRK06835 DNA replication prote 96.7 0.025 5.4E-07 52.3 12.0 108 79-207 184-305 (329)
246 TIGR02655 circ_KaiC circadian 96.7 0.0014 3E-08 63.7 3.9 86 72-166 258-362 (484)
247 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.0014 3E-08 56.4 3.4 37 77-113 37-78 (226)
248 PF07726 AAA_3: ATPase family 96.7 0.00086 1.9E-08 53.5 1.8 27 81-107 2-28 (131)
249 PF08477 Miro: Miro-like prote 96.7 0.0017 3.6E-08 49.9 3.4 23 80-102 1-23 (119)
250 TIGR01241 FtsH_fam ATP-depende 96.7 0.0015 3.3E-08 63.5 3.8 31 79-109 89-119 (495)
251 PF00910 RNA_helicase: RNA hel 96.7 0.0013 2.9E-08 50.4 2.8 23 81-103 1-23 (107)
252 PF02367 UPF0079: Uncharacteri 96.7 0.0022 4.9E-08 50.8 4.0 29 77-105 14-42 (123)
253 TIGR01425 SRP54_euk signal rec 96.6 0.02 4.4E-07 54.7 11.1 26 77-102 99-124 (429)
254 PRK06067 flagellar accessory p 96.6 0.0028 6E-08 55.3 4.9 29 72-101 20-48 (234)
255 KOG4235 Mitochondrial thymidin 96.6 0.11 2.4E-06 44.5 14.0 20 180-199 152-171 (244)
256 PF00448 SRP54: SRP54-type pro 96.6 0.0021 4.5E-08 55.0 3.8 26 78-103 1-26 (196)
257 PTZ00361 26 proteosome regulat 96.6 0.002 4.3E-08 61.8 3.9 32 78-109 217-248 (438)
258 PRK06620 hypothetical protein; 96.6 0.0016 3.5E-08 56.5 3.0 30 79-108 45-74 (214)
259 PRK04195 replication factor C 96.6 0.0018 4E-08 62.7 3.7 32 78-109 39-70 (482)
260 PRK08903 DnaA regulatory inact 96.6 0.0026 5.5E-08 55.2 4.2 35 79-113 43-82 (227)
261 PRK12723 flagellar biosynthesi 96.6 0.0087 1.9E-07 56.5 8.0 27 77-103 173-199 (388)
262 PRK14729 miaA tRNA delta(2)-is 96.6 0.0023 5.1E-08 58.3 4.1 33 78-111 4-36 (300)
263 KOG2004 Mitochondrial ATP-depe 96.6 0.0018 3.8E-08 64.6 3.4 37 76-112 436-474 (906)
264 PRK08533 flagellar accessory p 96.6 0.0038 8.3E-08 54.6 5.2 27 73-100 20-46 (230)
265 COG3911 Predicted ATPase [Gene 96.6 0.003 6.5E-08 51.7 4.2 41 76-116 7-48 (183)
266 PRK07764 DNA polymerase III su 96.6 0.05 1.1E-06 56.2 14.0 26 80-105 39-64 (824)
267 COG1219 ClpX ATP-dependent pro 96.6 0.0021 4.6E-08 58.7 3.6 32 76-107 95-126 (408)
268 PRK06526 transposase; Provisio 96.5 0.0028 6E-08 56.5 4.3 39 77-115 97-140 (254)
269 cd03115 SRP The signal recogni 96.5 0.0023 5E-08 53.0 3.5 23 80-102 2-24 (173)
270 PLN03046 D-glycerate 3-kinase; 96.5 0.0021 4.6E-08 61.0 3.5 38 76-113 210-252 (460)
271 PRK13695 putative NTPase; Prov 96.5 0.0023 5.1E-08 53.2 3.5 24 79-102 1-24 (174)
272 TIGR02237 recomb_radB DNA repa 96.5 0.003 6.5E-08 53.9 4.3 38 72-110 7-49 (209)
273 PRK10867 signal recognition pa 96.5 0.024 5.3E-07 54.2 10.8 26 77-102 99-124 (433)
274 TIGR03015 pepcterm_ATPase puta 96.5 0.0023 5E-08 56.5 3.6 26 78-103 43-68 (269)
275 TIGR02655 circ_KaiC circadian 96.5 0.0035 7.6E-08 60.8 5.1 27 72-99 16-42 (484)
276 PRK00080 ruvB Holliday junctio 96.5 0.0025 5.5E-08 58.5 3.9 28 79-106 52-79 (328)
277 PRK13342 recombination factor 96.5 0.0024 5.2E-08 60.7 3.8 31 79-109 37-67 (413)
278 PF03215 Rad17: Rad17 cell cyc 96.5 0.0027 5.9E-08 62.1 4.2 30 78-107 45-74 (519)
279 COG1126 GlnQ ABC-type polar am 96.5 0.0024 5.2E-08 55.4 3.4 25 76-100 26-50 (240)
280 KOG1533 Predicted GTPase [Gene 96.5 0.0014 3.1E-08 57.3 2.0 22 81-102 5-26 (290)
281 PRK07003 DNA polymerase III su 96.5 0.062 1.3E-06 54.7 13.6 26 80-105 40-65 (830)
282 PRK15455 PrkA family serine pr 96.4 0.0024 5.2E-08 62.8 3.4 26 77-102 102-127 (644)
283 PF06309 Torsin: Torsin; Inte 96.4 0.0043 9.2E-08 49.4 4.2 29 74-102 49-77 (127)
284 PRK06893 DNA replication initi 96.4 0.0031 6.7E-08 55.1 3.7 32 79-110 40-76 (229)
285 PF13191 AAA_16: AAA ATPase do 96.4 0.0026 5.7E-08 52.5 3.2 26 77-102 23-48 (185)
286 PRK10751 molybdopterin-guanine 96.4 0.0033 7.2E-08 52.8 3.7 27 77-103 5-31 (173)
287 PF01695 IstB_IS21: IstB-like 96.4 0.0036 7.8E-08 52.7 4.0 40 77-116 46-90 (178)
288 PRK09183 transposase/IS protei 96.4 0.0035 7.6E-08 55.9 4.0 37 77-113 101-142 (259)
289 cd01120 RecA-like_NTPases RecA 96.4 0.0027 5.9E-08 50.8 3.0 22 81-102 2-23 (165)
290 COG2255 RuvB Holliday junction 96.4 0.0031 6.6E-08 56.8 3.4 34 80-113 54-88 (332)
291 COG1855 ATPase (PilT family) [ 96.4 0.0026 5.7E-08 60.4 3.2 23 81-103 266-288 (604)
292 cd04163 Era Era subfamily. Er 96.4 0.0031 6.8E-08 50.2 3.3 24 78-101 3-26 (168)
293 TIGR02928 orc1/cdc6 family rep 96.4 0.0026 5.7E-08 58.9 3.2 58 35-102 7-64 (365)
294 CHL00176 ftsH cell division pr 96.4 0.0035 7.5E-08 62.8 4.2 32 78-109 216-247 (638)
295 COG1220 HslU ATP-dependent pro 96.4 0.0033 7.1E-08 57.9 3.6 33 77-109 49-81 (444)
296 PF01926 MMR_HSR1: 50S ribosom 96.4 0.0033 7.1E-08 48.4 3.1 21 80-100 1-21 (116)
297 CHL00206 ycf2 Ycf2; Provisiona 96.4 0.0031 6.7E-08 68.9 3.9 35 80-114 1632-1668(2281)
298 PF00931 NB-ARC: NB-ARC domain 96.4 0.007 1.5E-07 53.9 5.7 83 77-168 18-112 (287)
299 PF07724 AAA_2: AAA domain (Cd 96.4 0.0045 9.8E-08 51.8 4.2 26 79-104 4-29 (171)
300 PRK12323 DNA polymerase III su 96.3 0.078 1.7E-06 53.2 13.4 25 80-104 40-64 (700)
301 PRK10416 signal recognition pa 96.3 0.004 8.6E-08 57.3 4.1 27 76-102 112-138 (318)
302 PRK08084 DNA replication initi 96.3 0.003 6.6E-08 55.4 3.2 33 79-111 46-83 (235)
303 TIGR00101 ureG urease accessor 96.3 0.0039 8.5E-08 53.4 3.8 26 78-103 1-26 (199)
304 cd01131 PilT Pilus retraction 96.3 0.0035 7.5E-08 53.5 3.5 24 80-103 3-26 (198)
305 TIGR03707 PPK2_P_aer polyphosp 96.3 0.32 6.9E-06 42.7 15.7 164 77-248 30-222 (230)
306 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.0042 9E-08 55.4 4.0 38 71-109 30-72 (259)
307 KOG0733 Nuclear AAA ATPase (VC 96.3 0.0027 5.9E-08 62.3 2.9 38 80-117 547-586 (802)
308 cd01394 radB RadB. The archaea 96.3 0.0048 1E-07 53.0 4.3 30 72-102 14-43 (218)
309 PLN03025 replication factor C 96.3 0.0038 8.2E-08 57.2 3.8 25 79-103 35-59 (319)
310 PF03205 MobB: Molybdopterin g 96.3 0.004 8.7E-08 50.4 3.5 24 79-102 1-24 (140)
311 PF08303 tRNA_lig_kinase: tRNA 96.3 0.0028 6.1E-08 52.6 2.6 32 81-112 2-34 (168)
312 cd01130 VirB11-like_ATPase Typ 96.3 0.0038 8.3E-08 52.6 3.5 27 77-103 24-50 (186)
313 KOG0735 AAA+-type ATPase [Post 96.3 0.015 3.3E-07 58.2 7.8 40 79-118 702-743 (952)
314 PRK04296 thymidine kinase; Pro 96.3 0.0042 9.1E-08 52.7 3.6 25 78-102 2-26 (190)
315 PRK06921 hypothetical protein; 96.3 0.095 2E-06 46.9 12.4 38 78-115 117-160 (266)
316 cd00820 PEPCK_HprK Phosphoenol 96.2 0.0046 9.9E-08 47.8 3.4 23 77-99 14-36 (107)
317 PRK08181 transposase; Validate 96.2 0.0043 9.3E-08 55.7 3.7 40 77-116 105-149 (269)
318 KOG1969 DNA replication checkp 96.2 0.0044 9.5E-08 62.0 4.0 33 77-109 325-357 (877)
319 TIGR00763 lon ATP-dependent pr 96.2 0.0038 8.3E-08 64.0 3.8 31 77-107 346-376 (775)
320 cd04155 Arl3 Arl3 subfamily. 96.2 0.004 8.6E-08 50.9 3.2 25 77-101 13-37 (173)
321 PRK13768 GTPase; Provisional 96.2 0.0046 1E-07 54.9 3.7 25 78-102 2-26 (253)
322 TIGR03689 pup_AAA proteasome A 96.2 0.0038 8.3E-08 60.8 3.4 27 79-105 217-243 (512)
323 COG1224 TIP49 DNA helicase TIP 96.2 0.0038 8.3E-08 57.8 3.2 41 77-117 64-108 (450)
324 TIGR01243 CDC48 AAA family ATP 96.2 0.0045 9.7E-08 63.1 3.9 36 80-115 489-526 (733)
325 PRK12402 replication factor C 96.2 0.0049 1.1E-07 56.2 3.8 24 80-103 38-61 (337)
326 PRK09302 circadian clock prote 96.2 0.006 1.3E-07 59.5 4.6 37 72-109 268-309 (509)
327 KOG0737 AAA+-type ATPase [Post 96.2 0.0038 8.3E-08 57.8 3.0 39 79-117 128-168 (386)
328 PRK14962 DNA polymerase III su 96.1 0.0056 1.2E-07 59.3 4.2 27 79-105 37-63 (472)
329 PF01078 Mg_chelatase: Magnesi 96.1 0.0039 8.6E-08 53.7 2.8 24 79-102 23-46 (206)
330 PRK14961 DNA polymerase III su 96.1 0.0048 1E-07 57.7 3.6 26 80-105 40-65 (363)
331 PF00005 ABC_tran: ABC transpo 96.1 0.0041 8.9E-08 49.1 2.7 26 77-102 10-35 (137)
332 COG0464 SpoVK ATPases of the A 96.1 0.0045 9.8E-08 60.0 3.5 37 80-116 278-316 (494)
333 smart00173 RAS Ras subfamily o 96.1 0.0053 1.1E-07 49.6 3.3 21 80-100 2-22 (164)
334 KOG0734 AAA+-type ATPase conta 96.1 0.038 8.3E-07 53.8 9.4 31 79-109 338-368 (752)
335 TIGR00750 lao LAO/AO transport 96.1 0.007 1.5E-07 55.1 4.3 26 77-102 33-58 (300)
336 KOG0743 AAA+-type ATPase [Post 96.1 0.004 8.7E-08 59.1 2.7 29 81-109 238-266 (457)
337 COG3839 MalK ABC-type sugar tr 96.1 0.0046 9.9E-08 57.2 3.0 35 76-113 27-61 (338)
338 PF06068 TIP49: TIP49 C-termin 96.1 0.0053 1.1E-07 57.3 3.4 41 77-117 49-93 (398)
339 PRK09435 membrane ATPase/prote 96.1 0.0065 1.4E-07 56.2 4.0 26 77-102 55-80 (332)
340 cd04138 H_N_K_Ras_like H-Ras/N 96.0 0.006 1.3E-07 48.8 3.3 23 79-101 2-24 (162)
341 PRK11331 5-methylcytosine-spec 96.0 0.0051 1.1E-07 58.9 3.3 27 77-103 193-219 (459)
342 COG0714 MoxR-like ATPases [Gen 96.0 0.0052 1.1E-07 56.5 3.3 30 77-106 42-71 (329)
343 TIGR03708 poly_P_AMP_trns poly 96.0 0.29 6.3E-06 47.6 15.3 166 76-249 38-232 (493)
344 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.007 1.5E-07 52.5 3.9 29 72-101 14-42 (235)
345 TIGR01618 phage_P_loop phage n 96.0 0.0045 9.8E-08 54.0 2.6 33 76-110 10-42 (220)
346 TIGR01243 CDC48 AAA family ATP 96.0 0.0054 1.2E-07 62.5 3.6 32 78-109 212-243 (733)
347 PRK14956 DNA polymerase III su 96.0 0.0054 1.2E-07 59.3 3.4 26 80-105 42-67 (484)
348 PRK10787 DNA-binding ATP-depen 96.0 0.0057 1.2E-07 62.7 3.7 31 77-107 348-378 (784)
349 cd03116 MobB Molybdenum is an 96.0 0.0074 1.6E-07 49.9 3.7 25 79-103 2-26 (159)
350 PHA02624 large T antigen; Prov 96.0 0.0071 1.5E-07 59.8 4.1 33 77-109 430-462 (647)
351 TIGR03499 FlhF flagellar biosy 96.0 0.0071 1.5E-07 54.6 3.9 26 77-102 193-218 (282)
352 KOG0736 Peroxisome assembly fa 96.0 0.041 9E-07 55.6 9.4 37 80-116 707-745 (953)
353 COG0541 Ffh Signal recognition 96.0 0.11 2.4E-06 49.4 11.8 27 76-102 98-124 (451)
354 cd04164 trmE TrmE (MnmE, ThdF, 96.0 0.0064 1.4E-07 48.3 3.2 24 78-101 1-24 (157)
355 PTZ00035 Rad51 protein; Provis 96.0 0.012 2.7E-07 54.5 5.5 28 72-100 113-140 (337)
356 TIGR03709 PPK2_rel_1 polyphosp 96.0 0.44 9.5E-06 42.7 15.1 169 77-253 55-252 (264)
357 PRK13341 recombination factor 96.0 0.0074 1.6E-07 61.3 4.3 33 77-109 51-83 (725)
358 cd04119 RJL RJL (RabJ-Like) su 96.0 0.0064 1.4E-07 49.0 3.1 22 80-101 2-23 (168)
359 COG1136 SalX ABC-type antimicr 95.9 0.0067 1.5E-07 53.0 3.4 25 76-100 29-53 (226)
360 PRK14722 flhF flagellar biosyn 95.9 0.0083 1.8E-07 56.3 4.2 27 76-102 135-161 (374)
361 PF01443 Viral_helicase1: Vira 95.9 0.005 1.1E-07 53.1 2.6 22 81-102 1-22 (234)
362 TIGR00231 small_GTP small GTP- 95.9 0.0073 1.6E-07 47.3 3.3 24 79-102 2-25 (161)
363 cd04136 Rap_like Rap-like subf 95.9 0.0075 1.6E-07 48.5 3.4 22 79-100 2-23 (163)
364 cd00876 Ras Ras family. The R 95.9 0.0057 1.2E-07 48.8 2.7 21 80-100 1-21 (160)
365 KOG0727 26S proteasome regulat 95.9 0.018 4E-07 51.2 6.0 47 72-120 185-233 (408)
366 PRK11034 clpA ATP-dependent Cl 95.9 0.0076 1.7E-07 61.5 4.2 33 80-112 490-524 (758)
367 TIGR01166 cbiO cobalt transpor 95.9 0.0071 1.5E-07 50.9 3.4 27 76-102 16-42 (190)
368 smart00175 RAB Rab subfamily o 95.9 0.0066 1.4E-07 48.8 3.1 22 80-101 2-23 (164)
369 PRK10646 ADP-binding protein; 95.9 0.01 2.2E-07 48.8 4.1 44 52-104 11-54 (153)
370 COG0378 HypB Ni2+-binding GTPa 95.9 0.0085 1.8E-07 51.1 3.7 24 79-102 14-37 (202)
371 cd01124 KaiC KaiC is a circadi 95.9 0.007 1.5E-07 50.3 3.2 21 81-101 2-22 (187)
372 COG4619 ABC-type uncharacteriz 95.9 0.0075 1.6E-07 50.6 3.2 27 76-102 27-53 (223)
373 cd03292 ABC_FtsE_transporter F 95.9 0.0074 1.6E-07 51.6 3.4 27 76-102 25-51 (214)
374 PRK06645 DNA polymerase III su 95.9 0.0072 1.6E-07 59.0 3.6 28 79-106 44-71 (507)
375 COG0465 HflB ATP-dependent Zn 95.9 0.027 5.8E-07 55.8 7.5 39 78-116 183-223 (596)
376 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.9 0.0076 1.6E-07 51.7 3.4 27 76-102 28-54 (218)
377 TIGR00960 3a0501s02 Type II (G 95.9 0.0076 1.6E-07 51.7 3.3 27 76-102 27-53 (216)
378 cd03264 ABC_drug_resistance_li 95.8 0.0073 1.6E-07 51.6 3.1 25 77-102 25-49 (211)
379 TIGR00073 hypB hydrogenase acc 95.8 0.0092 2E-07 51.1 3.7 27 77-103 21-47 (207)
380 cd03301 ABC_MalK_N The N-termi 95.8 0.0083 1.8E-07 51.3 3.4 27 76-102 24-50 (213)
381 cd00157 Rho Rho (Ras homology) 95.8 0.008 1.7E-07 48.8 3.2 23 79-101 1-23 (171)
382 PRK09361 radB DNA repair and r 95.8 0.012 2.6E-07 50.9 4.4 38 72-110 18-60 (225)
383 cd04113 Rab4 Rab4 subfamily. 95.8 0.0075 1.6E-07 48.7 3.0 22 79-100 1-22 (161)
384 cd04139 RalA_RalB RalA/RalB su 95.8 0.0081 1.8E-07 48.2 3.1 21 80-100 2-22 (164)
385 PF13479 AAA_24: AAA domain 95.8 0.0067 1.4E-07 52.4 2.8 30 77-109 2-31 (213)
386 cd01128 rho_factor Transcripti 95.8 0.009 1.9E-07 53.1 3.6 29 76-104 14-42 (249)
387 COG1116 TauB ABC-type nitrate/ 95.8 0.0087 1.9E-07 52.8 3.4 26 76-101 27-52 (248)
388 PF00437 T2SE: Type II/IV secr 95.8 0.0094 2E-07 53.0 3.7 27 77-103 126-152 (270)
389 TIGR00176 mobB molybdopterin-g 95.8 0.0083 1.8E-07 49.3 3.1 23 80-102 1-23 (155)
390 cd00154 Rab Rab family. Rab G 95.8 0.0079 1.7E-07 47.5 2.9 21 80-100 2-22 (159)
391 cd03225 ABC_cobalt_CbiO_domain 95.8 0.0089 1.9E-07 51.0 3.4 27 76-102 25-51 (211)
392 TIGR02673 FtsE cell division A 95.8 0.0086 1.9E-07 51.2 3.3 27 76-102 26-52 (214)
393 PRK14086 dnaA chromosomal repl 95.8 0.091 2E-06 52.3 10.8 36 81-116 317-359 (617)
394 PF00025 Arf: ADP-ribosylation 95.8 0.0094 2E-07 49.6 3.5 25 76-100 12-36 (175)
395 cd03224 ABC_TM1139_LivF_branch 95.8 0.0089 1.9E-07 51.4 3.4 27 76-102 24-50 (222)
396 COG3842 PotA ABC-type spermidi 95.8 0.0072 1.6E-07 56.2 3.0 32 76-110 29-60 (352)
397 cd04177 RSR1 RSR1 subgroup. R 95.8 0.0091 2E-07 48.8 3.3 23 79-101 2-24 (168)
398 PHA02544 44 clamp loader, smal 95.8 0.01 2.2E-07 54.0 3.9 28 79-106 44-71 (316)
399 cd03219 ABC_Mj1267_LivG_branch 95.8 0.0081 1.8E-07 52.2 3.2 27 76-102 24-50 (236)
400 cd01862 Rab7 Rab7 subfamily. 95.7 0.0082 1.8E-07 48.8 3.0 22 80-101 2-23 (172)
401 cd03269 ABC_putative_ATPase Th 95.7 0.0093 2E-07 50.9 3.4 27 76-102 24-50 (210)
402 COG2812 DnaX DNA polymerase II 95.7 0.023 4.9E-07 55.4 6.4 26 81-106 41-66 (515)
403 PF13086 AAA_11: AAA domain; P 95.7 0.0091 2E-07 50.8 3.3 23 80-102 19-41 (236)
404 PRK09302 circadian clock prote 95.7 0.012 2.7E-07 57.3 4.6 28 72-100 26-53 (509)
405 TIGR03608 L_ocin_972_ABC putat 95.7 0.0092 2E-07 50.7 3.3 27 76-102 22-48 (206)
406 cd03261 ABC_Org_Solvent_Resist 95.7 0.0092 2E-07 51.9 3.4 27 76-102 24-50 (235)
407 COG2874 FlaH Predicted ATPases 95.7 0.032 7E-07 48.3 6.5 127 72-199 23-174 (235)
408 cd03262 ABC_HisP_GlnQ_permease 95.7 0.0095 2.1E-07 50.9 3.4 27 76-102 24-50 (213)
409 cd03263 ABC_subfamily_A The AB 95.7 0.0095 2.1E-07 51.2 3.4 27 76-102 26-52 (220)
410 TIGR02639 ClpA ATP-dependent C 95.7 0.0097 2.1E-07 60.7 4.0 38 76-113 481-521 (731)
411 TIGR02211 LolD_lipo_ex lipopro 95.7 0.0096 2.1E-07 51.2 3.4 27 76-102 29-55 (221)
412 PF03308 ArgK: ArgK protein; 95.7 0.011 2.3E-07 52.7 3.7 26 77-102 28-53 (266)
413 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.013 2.7E-07 50.8 4.1 28 72-100 15-42 (229)
414 cd03229 ABC_Class3 This class 95.7 0.01 2.2E-07 49.6 3.4 27 76-102 24-50 (178)
415 cd03259 ABC_Carb_Solutes_like 95.7 0.0098 2.1E-07 50.9 3.4 27 76-102 24-50 (213)
416 cd00879 Sar1 Sar1 subfamily. 95.7 0.01 2.2E-07 49.4 3.5 24 77-100 18-41 (190)
417 PRK13541 cytochrome c biogenes 95.7 0.01 2.2E-07 50.3 3.4 26 77-102 25-50 (195)
418 PRK14963 DNA polymerase III su 95.7 0.0083 1.8E-07 58.6 3.2 26 79-104 37-62 (504)
419 cd03256 ABC_PhnC_transporter A 95.7 0.0096 2.1E-07 51.9 3.4 27 76-102 25-51 (241)
420 cd01867 Rab8_Rab10_Rab13_like 95.7 0.011 2.4E-07 48.2 3.6 23 78-100 3-25 (167)
421 cd01983 Fer4_NifH The Fer4_Nif 95.7 0.011 2.3E-07 43.0 3.1 22 81-102 2-23 (99)
422 PF04665 Pox_A32: Poxvirus A32 95.7 0.011 2.4E-07 52.2 3.6 26 77-102 12-37 (241)
423 PRK14490 putative bifunctional 95.7 0.0097 2.1E-07 55.7 3.6 27 77-103 4-30 (369)
424 cd01918 HprK_C HprK/P, the bif 95.7 0.012 2.6E-07 48.2 3.6 33 77-110 13-45 (149)
425 COG1484 DnaC DNA replication p 95.7 0.011 2.4E-07 52.6 3.7 40 77-116 104-148 (254)
426 cd03226 ABC_cobalt_CbiO_domain 95.7 0.0098 2.1E-07 50.6 3.3 27 76-102 24-50 (205)
427 PRK14955 DNA polymerase III su 95.7 0.0095 2E-07 56.4 3.5 26 80-105 40-65 (397)
428 cd03258 ABC_MetN_methionine_tr 95.7 0.01 2.2E-07 51.5 3.4 27 76-102 29-55 (233)
429 cd03260 ABC_PstB_phosphate_tra 95.7 0.01 2.3E-07 51.3 3.4 27 76-102 24-50 (227)
430 COG1124 DppF ABC-type dipeptid 95.7 0.01 2.2E-07 52.2 3.3 26 76-101 31-56 (252)
431 PRK13851 type IV secretion sys 95.6 0.0083 1.8E-07 55.8 2.9 28 76-103 160-187 (344)
432 PRK14957 DNA polymerase III su 95.6 0.0096 2.1E-07 58.6 3.5 25 80-104 40-64 (546)
433 PRK14949 DNA polymerase III su 95.6 0.0089 1.9E-07 61.6 3.3 26 80-105 40-65 (944)
434 TIGR02315 ABC_phnC phosphonate 95.6 0.01 2.2E-07 51.8 3.4 27 76-102 26-52 (243)
435 COG1122 CbiO ABC-type cobalt t 95.6 0.0098 2.1E-07 52.4 3.2 27 76-102 28-54 (235)
436 cd04115 Rab33B_Rab33A Rab33B/R 95.6 0.011 2.5E-07 48.4 3.4 23 78-100 2-24 (170)
437 PRK14960 DNA polymerase III su 95.6 0.01 2.2E-07 59.4 3.6 27 79-105 38-64 (702)
438 smart00178 SAR Sar1p-like memb 95.6 0.011 2.4E-07 49.4 3.4 25 76-100 15-39 (184)
439 cd03296 ABC_CysA_sulfate_impor 95.6 0.011 2.3E-07 51.7 3.4 27 76-102 26-52 (239)
440 PRK14964 DNA polymerase III su 95.6 0.01 2.2E-07 57.7 3.5 26 80-105 37-62 (491)
441 cd03247 ABCC_cytochrome_bd The 95.6 0.011 2.4E-07 49.2 3.4 27 76-102 26-52 (178)
442 PF08298 AAA_PrkA: PrkA AAA do 95.6 0.013 2.8E-07 54.4 4.0 27 77-103 87-113 (358)
443 cd03235 ABC_Metallic_Cations A 95.6 0.0099 2.1E-07 50.9 3.1 27 76-102 23-49 (213)
444 COG3172 NadR Predicted ATPase/ 95.6 0.012 2.7E-07 48.7 3.4 31 75-105 5-35 (187)
445 cd03293 ABC_NrtD_SsuB_transpor 95.6 0.01 2.3E-07 51.0 3.3 27 76-102 28-54 (220)
446 KOG1970 Checkpoint RAD17-RFC c 95.6 0.011 2.3E-07 57.6 3.5 31 77-107 109-139 (634)
447 cd03232 ABC_PDR_domain2 The pl 95.6 0.011 2.4E-07 50.0 3.3 26 76-101 31-56 (192)
448 cd03230 ABC_DR_subfamily_A Thi 95.6 0.012 2.5E-07 48.9 3.4 27 76-102 24-50 (173)
449 cd03257 ABC_NikE_OppD_transpor 95.6 0.011 2.3E-07 51.1 3.3 27 76-102 29-55 (228)
450 cd03246 ABCC_Protease_Secretio 95.6 0.012 2.6E-07 48.9 3.4 27 76-102 26-52 (173)
451 TIGR03410 urea_trans_UrtE urea 95.6 0.011 2.3E-07 51.3 3.3 27 76-102 24-50 (230)
452 PRK11629 lolD lipoprotein tran 95.6 0.011 2.4E-07 51.4 3.4 27 76-102 33-59 (233)
453 cd04137 RheB Rheb (Ras Homolog 95.6 0.011 2.4E-07 48.7 3.3 22 79-100 2-23 (180)
454 PRK11264 putative amino-acid A 95.6 0.011 2.4E-07 51.9 3.4 27 76-102 27-53 (250)
455 cd03265 ABC_DrrA DrrA is the A 95.6 0.011 2.5E-07 50.8 3.4 27 76-102 24-50 (220)
456 PRK10247 putative ABC transpor 95.6 0.012 2.5E-07 51.1 3.4 27 76-102 31-57 (225)
457 cd01870 RhoA_like RhoA-like su 95.6 0.011 2.4E-07 48.3 3.1 23 79-101 2-24 (175)
458 TIGR02323 CP_lyasePhnK phospho 95.6 0.011 2.4E-07 52.0 3.3 27 76-102 27-53 (253)
459 cd03215 ABC_Carb_Monos_II This 95.6 0.012 2.5E-07 49.4 3.3 27 76-102 24-50 (182)
460 PRK14250 phosphate ABC transpo 95.6 0.011 2.5E-07 51.7 3.4 27 76-102 27-53 (241)
461 cd01895 EngA2 EngA2 subfamily. 95.6 0.011 2.4E-07 47.6 3.0 24 78-101 2-25 (174)
462 cd03223 ABCD_peroxisomal_ALDP 95.6 0.012 2.6E-07 48.6 3.4 27 76-102 25-51 (166)
463 COG0802 Predicted ATPase or ki 95.6 0.016 3.4E-07 47.4 3.8 28 77-104 24-51 (149)
464 cd01860 Rab5_related Rab5-rela 95.6 0.012 2.5E-07 47.4 3.2 23 79-101 2-24 (163)
465 COG4240 Predicted kinase [Gene 95.6 0.014 3E-07 51.2 3.7 40 76-115 48-93 (300)
466 PTZ00202 tuzin; Provisional 95.6 0.054 1.2E-06 52.1 7.9 27 79-105 287-313 (550)
467 cd01864 Rab19 Rab19 subfamily. 95.6 0.012 2.7E-07 47.7 3.3 23 78-100 3-25 (165)
468 TIGR03864 PQQ_ABC_ATP ABC tran 95.6 0.012 2.6E-07 51.3 3.4 27 76-102 25-51 (236)
469 TIGR03771 anch_rpt_ABC anchore 95.5 0.012 2.5E-07 51.0 3.4 26 77-102 5-30 (223)
470 KOG0651 26S proteasome regulat 95.5 0.025 5.3E-07 51.7 5.4 41 77-117 165-207 (388)
471 PRK10463 hydrogenase nickel in 95.5 0.014 3E-07 52.9 3.9 27 76-102 102-128 (290)
472 TIGR01978 sufC FeS assembly AT 95.5 0.012 2.5E-07 51.4 3.3 26 76-101 24-49 (243)
473 cd03218 ABC_YhbG The ABC trans 95.5 0.012 2.6E-07 51.0 3.4 27 76-102 24-50 (232)
474 TIGR02236 recomb_radA DNA repa 95.5 0.014 2.9E-07 53.3 3.9 29 72-101 90-118 (310)
475 PRK13540 cytochrome c biogenes 95.5 0.012 2.7E-07 49.9 3.4 27 76-102 25-51 (200)
476 PRK13894 conjugal transfer ATP 95.5 0.012 2.6E-07 54.2 3.4 26 77-102 147-172 (319)
477 PRK11701 phnK phosphonate C-P 95.5 0.012 2.5E-07 52.1 3.3 27 76-102 30-56 (258)
478 cd04123 Rab21 Rab21 subfamily. 95.5 0.012 2.6E-07 47.0 3.1 22 80-101 2-23 (162)
479 cd03222 ABC_RNaseL_inhibitor T 95.5 0.012 2.6E-07 49.5 3.2 27 76-102 23-49 (177)
480 cd03214 ABC_Iron-Siderophores_ 95.5 0.013 2.8E-07 48.9 3.4 27 76-102 23-49 (180)
481 KOG0729 26S proteasome regulat 95.5 0.02 4.3E-07 51.3 4.6 63 53-118 184-253 (435)
482 cd03268 ABC_BcrA_bacitracin_re 95.5 0.013 2.8E-07 50.0 3.4 27 76-102 24-50 (208)
483 PRK12726 flagellar biosynthesi 95.5 0.017 3.7E-07 54.4 4.4 27 76-102 204-230 (407)
484 cd03250 ABCC_MRP_domain1 Domai 95.5 0.013 2.8E-07 49.9 3.4 27 76-102 29-55 (204)
485 TIGR02770 nickel_nikD nickel i 95.5 0.012 2.6E-07 51.1 3.3 26 77-102 11-36 (230)
486 COG1120 FepC ABC-type cobalami 95.5 0.012 2.5E-07 52.5 3.2 28 76-103 26-53 (258)
487 cd04159 Arl10_like Arl10-like 95.5 0.01 2.2E-07 46.9 2.7 21 81-101 2-22 (159)
488 cd04160 Arfrp1 Arfrp1 subfamil 95.5 0.011 2.4E-07 47.9 2.9 23 80-102 1-23 (167)
489 PRK10771 thiQ thiamine transpo 95.5 0.012 2.7E-07 51.1 3.3 27 76-102 23-49 (232)
490 PRK14242 phosphate transporter 95.5 0.012 2.7E-07 51.7 3.3 27 76-102 30-56 (253)
491 TIGR02782 TrbB_P P-type conjug 95.5 0.013 2.7E-07 53.5 3.5 25 78-102 132-156 (299)
492 PRK11124 artP arginine transpo 95.5 0.013 2.8E-07 51.2 3.4 27 76-102 26-52 (242)
493 PRK07940 DNA polymerase III su 95.5 0.096 2.1E-06 49.6 9.5 28 78-105 36-63 (394)
494 PRK15177 Vi polysaccharide exp 95.5 0.013 2.8E-07 50.5 3.3 27 76-102 11-37 (213)
495 cd03114 ArgK-like The function 95.5 0.012 2.7E-07 47.9 3.0 22 81-102 2-23 (148)
496 PRK11248 tauB taurine transpor 95.5 0.013 2.8E-07 52.0 3.4 27 76-102 25-51 (255)
497 cd03234 ABCG_White The White s 95.5 0.014 3E-07 50.6 3.5 28 76-103 31-58 (226)
498 PRK14247 phosphate ABC transpo 95.5 0.013 2.8E-07 51.5 3.4 27 76-102 27-53 (250)
499 cd03251 ABCC_MsbA MsbA is an e 95.5 0.013 2.9E-07 50.8 3.4 27 76-102 26-52 (234)
500 PRK14274 phosphate ABC transpo 95.5 0.013 2.8E-07 51.8 3.4 27 76-102 36-62 (259)
No 1
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.3e-36 Score=247.22 Aligned_cols=174 Identities=22% Similarity=0.423 Sum_probs=161.8
Q ss_pred ccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC-CChhHHHHHHHHhccCcccHHHHHHHHHHHHHc
Q 024390 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (268)
Q Consensus 74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~-~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~ 152 (268)
.++..++|+++|+|||||.|+|.+++++||+.|+|+|||+|++... +++.|..|++++.+|.++|.+++..+|++++.+
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 3467789999999999999999999999999999999999999988 899999999999999999999999999999987
Q ss_pred CCccCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHH
Q 024390 153 GYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPL 217 (268)
Q Consensus 153 ~~~~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l 217 (268)
. ...++|+||||||+..|+..|++.. .++++++|||++|++++|+ .+.+++|++.|.+.+.|+
T Consensus 84 ~--~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pv 161 (195)
T KOG3079|consen 84 S--GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPV 161 (195)
T ss_pred c--CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHH
Confidence 5 3446699999999999999999764 6899999999999999998 457899999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 218 EDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 218 ~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
++||++.++++.||++.++++|+.+|...+..
T Consensus 162 i~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 162 IEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999999988763
No 2
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=6.2e-36 Score=264.17 Aligned_cols=175 Identities=47% Similarity=0.784 Sum_probs=162.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++++|+|+|+|||||||+|+.|++.+|+.|||+|+++|+++..++++|+.+++++.+|+++|++++..++.+++.+....
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999874212
Q ss_pred CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh------------------------------------
Q 024390 157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG------------------------------------ 200 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~------------------------------------ 200 (268)
...|||||||||+..|++.|+....++.||+|+++++++++|+.
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~ 187 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPP 187 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCC
Confidence 47899999999999999999988889999999999999999862
Q ss_pred ---------------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 201 ---------------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 201 ---------------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
+.+++|++.|++++.|+.+||.+.++++.||++++++|||++|.++|...+
T Consensus 188 ~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~ 253 (261)
T PLN02459 188 PECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDD 253 (261)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhh
Confidence 136899999999999999999999999999999999999999999998765
No 3
>PLN02674 adenylate kinase
Probab=100.00 E-value=7.7e-36 Score=262.16 Aligned_cols=168 Identities=27% Similarity=0.514 Sum_probs=157.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
.++|+|+|+|||||+|+|+.||++||++|||+|+++|+++..++++|+.+++++.+|+++|++++..++.+++.+.. .
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~--~ 108 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS--C 108 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcC--c
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998864 3
Q ss_pred ccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh---------------------------------
Q 024390 158 EIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR--------------------------------- 199 (268)
Q Consensus 158 ~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl--------------------------------- 199 (268)
..|||||||||+..|++.|+.. ..++.||+|++|++++++|+
T Consensus 109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L 188 (244)
T PLN02674 109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 188 (244)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCcc
Confidence 6899999999999999999865 46999999999999999997
Q ss_pred -------hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390 200 -------GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 200 -------~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L 247 (268)
++.+++|++.|++++.++.+||.+.++++.||+++++++|++.|+.+|
T Consensus 189 ~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 189 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 235789999999999999999999999999999999999999999876
No 4
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=1.4e-33 Score=245.04 Aligned_cols=166 Identities=20% Similarity=0.378 Sum_probs=152.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|+|||||||+|+.|+++|++.|+|+++++|+++..++++++.+++++.+|.++|++++..++.+++.+. . .
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~--~-~ 77 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQD--G-K 77 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhcc--C-C
Confidence 479999999999999999999999999999999999999989999999999999999999999999999999875 2 7
Q ss_pred cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh----------------------------------
Q 024390 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR---------------------------------- 199 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl---------------------------------- 199 (268)
.|||||||||+..|++.|+.. ..++.||+|++|++++++|+
T Consensus 78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~ 157 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGE 157 (223)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCc
Confidence 899999999999999998754 46999999999999999996
Q ss_pred ---------hHHHHHHHHHHHHH---chHHHHHHHh-----CCcEEEEeCCCCHHHHHHHHHHHH
Q 024390 200 ---------GGSLKEKLEAYAEL---SKPLEDYYQK-----QKKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 200 ---------~~~~~~rl~~y~~~---~~~l~~~y~~-----~~~l~~Ida~~s~eev~~~I~~~L 247 (268)
++.+++|++.|+++ ..++.+||.+ .++++.||+++++++|+++|.+.|
T Consensus 158 l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 158 LSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred cccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 13678999999997 4578999996 678999999999999999999876
No 5
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=1.5e-33 Score=256.88 Aligned_cols=171 Identities=25% Similarity=0.436 Sum_probs=158.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|||||||||+|+.|++.||++|||+||++|.++..+++++..+.+++.+|.++|++++..++.+++.+.. ..
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~--~~ 78 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPD--AA 78 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhccc--cc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999998864 36
Q ss_pred cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh-------------------hHHHHHHHHHHHHHc
Q 024390 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-------------------GGSLKEKLEAYAELS 214 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl-------------------~~~~~~rl~~y~~~~ 214 (268)
.||||||||++..|++.|+.+ ..||+||+|+||++++++|+ ++.+++|+..|++++
T Consensus 79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t 158 (333)
T PRK13808 79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQT 158 (333)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999998764 37999999999999999997 235788999999999
Q ss_pred hHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 215 KPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 215 ~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
.++.+||.+.+.++.||++.+++||+++|+..|....
T Consensus 159 ~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~ 195 (333)
T PRK13808 159 EPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVG 195 (333)
T ss_pred HHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 9999999988889999999999999999999998654
No 6
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=4.3e-33 Score=235.61 Aligned_cols=167 Identities=26% Similarity=0.435 Sum_probs=154.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
.++|+|+|+|||||||+|+.|++++|++|||+|+++|+++..+++++..+++++.+|+.+|++++..++.+++.+. .
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~---~ 78 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL---N 78 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---c
Confidence 4579999999999999999999999999999999999999889999999999999999999999999999998763 3
Q ss_pred ccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh---------hHHHHHHHHHHHHHchHHHHHHHh
Q 024390 158 EIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR---------GGSLKEKLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 158 ~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl---------~~~~~~rl~~y~~~~~~l~~~y~~ 223 (268)
..||||||||++..|++.|+.. ..++.+|+|+||++++.+|+ ++.+++|++.|++.+.|+.+||.+
T Consensus 79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~ 158 (183)
T PRK14531 79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQ 158 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999988764 36789999999999999998 356889999999999999999998
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHH
Q 024390 224 QKKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 224 ~~~l~~Ida~~s~eev~~~I~~~L 247 (268)
.+.++.||+++++++|+++|.+.|
T Consensus 159 ~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 159 RGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHh
Confidence 889999999999999999999876
No 7
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=6.6e-33 Score=239.63 Aligned_cols=170 Identities=26% Similarity=0.438 Sum_probs=157.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|+|||||||+|+.|++.+++.|+|+|+++|+++..+++.++.+++++.+|.++|++++.+++.+++.... ..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~--~~ 78 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIK--NN 78 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhccc--cc
Confidence 4689999999999999999999999999999999999999899999999999999999999999999999998763 46
Q ss_pred cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh---------------------------------------
Q 024390 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR--------------------------------------- 199 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl--------------------------------------- 199 (268)
.|||||||||+..|++.|++......+|+|++|++++++|+
T Consensus 79 ~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD 158 (211)
T PRK14526 79 DNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDD 158 (211)
T ss_pred CcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCC
Confidence 89999999999999999988655457889999999999996
Q ss_pred -hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 200 -GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 200 -~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
++.+++|++.|++++.|+.+||.+.++++.||+++++++|+++|.++|..+
T Consensus 159 ~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~~ 210 (211)
T PRK14526 159 KEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISKK 210 (211)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccc
Confidence 346789999999999999999999899999999999999999999999764
No 8
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=9.8e-33 Score=234.25 Aligned_cols=166 Identities=27% Similarity=0.499 Sum_probs=154.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
++|+|+|+|||||||+|+.|++++|++|+++++++|.++..++++|..++.++..|+++|++++..++.+++.+.. ..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~--~~ 79 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREAD--CK 79 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcC--cc
Confidence 5799999999999999999999999999999999999999899999999999999999999999999999998763 36
Q ss_pred cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHHH
Q 024390 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLEDY 220 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~ 220 (268)
.||||||||++..|++.|++. ..+|.+|+|+||++++++|+ ++.+++|++.|++++.|+.++
T Consensus 80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~ 159 (186)
T PRK14528 80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDF 159 (186)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 799999999999999998764 36999999999999999998 467899999999999999999
Q ss_pred HHhCCcEEEEeCCCCHHHHHHHHHHH
Q 024390 221 YQKQKKLLEFQVGSAPVETWQGLLTA 246 (268)
Q Consensus 221 y~~~~~l~~Ida~~s~eev~~~I~~~ 246 (268)
|+++++++.||+++++++|++.|...
T Consensus 160 y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 160 YAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 99999999999999999999998864
No 9
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=1.3e-32 Score=237.35 Aligned_cols=167 Identities=32% Similarity=0.566 Sum_probs=154.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCcc
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~ 159 (268)
+|+|+|+|||||||+|+.|++++|++|||+++++|+++..+++++..+++++.+|..+|++++.+++.+++.+... ...
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~-~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD-NEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc-cCC
Confidence 4899999999999999999999999999999999999988899999999999999999999999999999987432 367
Q ss_pred EEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhh--------------------------------------
Q 024390 160 GFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNR-------------------------------------- 199 (268)
Q Consensus 160 g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl-------------------------------------- 199 (268)
||||||||++..|++.|++.. .++.+|+|++|++++++|+
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~d 159 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQRED 159 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCC
Confidence 999999999999999998764 5999999999999999886
Q ss_pred --hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390 200 --GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 200 --~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L 247 (268)
++.+++|++.|++++.++.+||.+.++++.||+++++++|++.|.++|
T Consensus 160 D~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 160 DTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 134789999999999999999999889999999999999999999886
No 10
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=1.6e-32 Score=232.41 Aligned_cols=168 Identities=29% Similarity=0.458 Sum_probs=154.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|+|||||||+|+.||+++|+.|||+|+++|+++..+++.+..+++++..|+.+|++++.+++.+++.... .+
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~ 78 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAE--AA 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--cc
Confidence 4699999999999999999999999999999999999988889999999999999999999999999999997653 47
Q ss_pred cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHHH
Q 024390 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLEDY 220 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~ 220 (268)
.|||+||||++..|++.+++. ..||++|+|++|++++.+|+ ++.+.+|+..|.++..++.++
T Consensus 79 ~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~ 158 (188)
T PRK14532 79 GGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPY 158 (188)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988653 46899999999999999997 235789999999999999999
Q ss_pred HHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 221 YQKQKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 221 y~~~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
|.+.+.++.||+++++++|+++|.+.|.
T Consensus 159 y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 159 YAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 9988889999999999999999999885
No 11
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=1e-31 Score=234.81 Aligned_cols=170 Identities=23% Similarity=0.452 Sum_probs=154.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
.+++|+|+|+|||||||+|+.||++||++|||+|+++|+++..++++|..+++++.+|.++|++++.+++.+++.+....
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 45789999999999999999999999999999999999999888899999999999999999999999999999872112
Q ss_pred CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh-------------------------------------
Q 024390 157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR------------------------------------- 199 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl------------------------------------- 199 (268)
...|||||||||+..|++.|++...++++|+|+++++++++|+
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~ 164 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGC 164 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccccc
Confidence 4689999999999999999988788999999999999998874
Q ss_pred -------------hHHHHHHHHHHHHHchHHHHHHHhCCc-EEEE---eCCCCHHHHHHHHHHH
Q 024390 200 -------------GGSLKEKLEAYAELSKPLEDYYQKQKK-LLEF---QVGSAPVETWQGLLTA 246 (268)
Q Consensus 200 -------------~~~~~~rl~~y~~~~~~l~~~y~~~~~-l~~I---da~~s~eev~~~I~~~ 246 (268)
++.+++|++.|++++.++.+||.+.++ ++.| |+++++++|++.|.+.
T Consensus 165 ~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 228 (229)
T PTZ00088 165 KGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR 228 (229)
T ss_pred CCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence 225789999999999999999999998 9888 7999999999998864
No 12
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=1.4e-31 Score=231.73 Aligned_cols=169 Identities=30% Similarity=0.536 Sum_probs=154.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|+|||||||+|+.||++||+.|+|+++++|+++..+++.+..+++++.+|+.+|++++..++.+++.+.. ..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~--~~ 78 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPD--CK 78 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccC--cc
Confidence 4799999999999999999999999999999999999998889999999999999999999999999999998763 34
Q ss_pred cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh---------------------------------
Q 024390 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG--------------------------------- 200 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~--------------------------------- 200 (268)
.||||||||++..|++.|++. ..++.+|+|+||++++++|+.
T Consensus 79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~ 158 (215)
T PRK00279 79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELI 158 (215)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCccc
Confidence 599999999999999999654 368899999999999999972
Q ss_pred -------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 201 -------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 201 -------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
+.+++|+..|++++.++.+||.+.+.++.||+++++++|+++|.+.|..
T Consensus 159 ~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 159 QRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 2578999999999999999999888999999999999999999998863
No 13
>PLN02200 adenylate kinase family protein
Probab=100.00 E-value=3e-31 Score=232.76 Aligned_cols=172 Identities=21% Similarity=0.412 Sum_probs=157.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
.+++|+|+|+|||||||+|+.|++++|+.||++++++|+++...++.+..+.+.+..|+.+|++++..++.+++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~--- 118 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS--- 118 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---
Confidence 45789999999999999999999999999999999999999888889999999999999999999999999998764
Q ss_pred CccEEEEcCCcCCHHHHHHHHhh--cCCCeEEEEecCHHHHHhhh-----------hHHHHHHHHHHHHHchHHHHHHHh
Q 024390 157 GEIGFILDGLPRSRIQAEILDQL--AEIDLVVNFKCADNFIVTNR-----------GGSLKEKLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~--~~~d~vV~Ld~~~e~l~~Rl-----------~~~~~~rl~~y~~~~~~l~~~y~~ 223 (268)
.+.||||||||++..|+..|++. ..||.+|+|+++++++.+|+ ++.+++|++.|++...++.++|++
T Consensus 119 ~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~ 198 (234)
T PLN02200 119 DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSK 198 (234)
T ss_pred CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999988765 36999999999999999998 245789999999999999999998
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 224 QKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 224 ~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
.+.++.||+++++++|++.|++.+....
T Consensus 199 ~~~~~~IDa~~~~eeV~~~v~~~l~~~~ 226 (234)
T PLN02200 199 KGKLYTINAVGTVDEIFEQVRPIFAACE 226 (234)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 8889999999999999999999988653
No 14
>PRK02496 adk adenylate kinase; Provisional
Probab=100.00 E-value=4.3e-31 Score=223.12 Aligned_cols=169 Identities=31% Similarity=0.524 Sum_probs=154.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
+++|+|.|+|||||||+|+.|++++|++|+++|+++++.+..+++++..++..+.+|+.+|++++..++.+++.+.. .
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~--~ 78 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPD--A 78 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--c
Confidence 36799999999999999999999999999999999999998889999999999999999999999999999998653 3
Q ss_pred ccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh---------hHHHHHHHHHHHHHchHHHHHHHh
Q 024390 158 EIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR---------GGSLKEKLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 158 ~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl---------~~~~~~rl~~y~~~~~~l~~~y~~ 223 (268)
..|||+||||++..|++.++.. ..++.+|+|++|++++.+|+ ++.+++|++.|+++..++.++|++
T Consensus 79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~ 158 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRD 158 (184)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999888753 36899999999999999997 356789999999999999999998
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 224 QKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 224 ~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
.+.++.||+++++++|+++|.+.|.
T Consensus 159 ~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 159 RQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhC
Confidence 8889999999999999999998774
No 15
>PRK14527 adenylate kinase; Provisional
Probab=99.98 E-value=7.6e-31 Score=223.15 Aligned_cols=168 Identities=27% Similarity=0.468 Sum_probs=154.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
+++.|+|+|+|||||||+|+.|++++|+.|+++|++++++...+++++..+++.+.+|..+|++++..++.+++.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~-- 82 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME-- 82 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--
Confidence 567899999999999999999999999999999999999988888999999999999999999999999999998752
Q ss_pred CccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHH
Q 024390 157 GEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLE 218 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~ 218 (268)
..+||+||||++..|++.++.. ..+++||+|+||++++++|+ ++.+++|++.|.++..++.
T Consensus 83 -~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~ 161 (191)
T PRK14527 83 -PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLV 161 (191)
T ss_pred -CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHH
Confidence 3579999999999999888754 35788999999999999998 3567899999999999999
Q ss_pred HHHHhCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390 219 DYYQKQKKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 219 ~~y~~~~~l~~Ida~~s~eev~~~I~~~L 247 (268)
+||.+.+.++.||+++++++|+++|+..|
T Consensus 162 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 162 DYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 99999899999999999999999999876
No 16
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.98 E-value=8e-31 Score=220.71 Aligned_cols=165 Identities=19% Similarity=0.410 Sum_probs=150.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCcc
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~ 159 (268)
.|+|+|+|||||||+|+.|++++|++|||++|++|+++..+++.++.+++++.+|..+|++++..++.+++... .+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~ 77 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQAD---GSK 77 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc---CCC
Confidence 38999999999999999999999999999999999998878889999999999999999999999999988764 268
Q ss_pred EEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHHHHH
Q 024390 160 GFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLEDYYQ 222 (268)
Q Consensus 160 g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~y~ 222 (268)
+|||||||++..|++.+++. ..||++|+|++|++++++|+ .+.+++|+..|.+...++.++|.
T Consensus 78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~ 157 (183)
T TIGR01359 78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYE 157 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654 47999999999999999997 24578899999999999999999
Q ss_pred hCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390 223 KQKKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 223 ~~~~l~~Ida~~s~eev~~~I~~~L 247 (268)
+.+.++.||+++++++|+++|.+.|
T Consensus 158 ~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 158 NKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHh
Confidence 8888999999999999999999876
No 17
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.98 E-value=1.8e-31 Score=218.68 Aligned_cols=142 Identities=35% Similarity=0.607 Sum_probs=128.3
Q ss_pred EEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCccEEE
Q 024390 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFI 162 (268)
Q Consensus 83 I~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~g~I 162 (268)
|+|||||||||+|+.||++||++|||+++++|+++...+++|+.+++++.+|+.+|++++.+++..++.+. ....|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~--~~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP--PCNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG--GTTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh--cccceee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999987 3579999
Q ss_pred EcCCcCCHHHHHHHHh-----hcCCCeEEEEecCHHHHHhhh----hHHHHHHHHHHHHHchHHHHHHHhCCc
Q 024390 163 LDGLPRSRIQAEILDQ-----LAEIDLVVNFKCADNFIVTNR----GGSLKEKLEAYAELSKPLEDYYQKQKK 226 (268)
Q Consensus 163 lDGfPr~~~qa~~l~~-----~~~~d~vV~Ld~~~e~l~~Rl----~~~~~~rl~~y~~~~~~l~~~y~~~~~ 226 (268)
|||||++..|++.|++ ...|+.||+|+|+++++.+|+ ++.+++|++.|++++.++.+||+++++
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~d~~~~i~~Rl~~y~~~~~~i~~~y~~~g~ 151 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQDNEEVIKKRLEEYRENTEPILDYYKEQGK 151 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999987 368999999999999999998 568999999999999999999998763
No 18
>PRK14530 adenylate kinase; Provisional
Probab=99.97 E-value=3.6e-30 Score=222.93 Aligned_cols=168 Identities=23% Similarity=0.439 Sum_probs=149.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc-----CCCChhHHHHHHHHhccCcccHHHHHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-----SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~-----~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (268)
++++|+|+|+|||||||+|+.|++++|++||++|++++++. ......+. +++.+..|..+|+++...++.+++.
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999986 22344554 6778899999999999999988876
Q ss_pred cCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh--------------------------------
Q 024390 152 DGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR-------------------------------- 199 (268)
Q Consensus 152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl-------------------------------- 199 (268)
+ ..|||+||||++..|++.|+....++++|+|++|.+++++|+
T Consensus 81 ~-----~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~r 155 (215)
T PRK14530 81 D-----ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGE 155 (215)
T ss_pred c-----CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCc
Confidence 4 358999999999999999988778999999999999999986
Q ss_pred --------hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 200 --------GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 200 --------~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
++.+++|+..|++++.++.+||.+.+.++.|||++++++|++.|.+.|...
T Consensus 156 l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 214 (215)
T PRK14530 156 LIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDDA 214 (215)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 235899999999999999999998888999999999999999999998753
No 19
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.97 E-value=2.8e-29 Score=211.51 Aligned_cols=162 Identities=30% Similarity=0.589 Sum_probs=150.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|+|||||||+|+.|+++++++|+|+++++|......+++++.++.++..|+++|+++...++..++....| .
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~--~ 78 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADC--K 78 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcc--c
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998744 3
Q ss_pred cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh----------hHHHHHHHHHHHHHchHHHHHHHh
Q 024390 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR----------GGSLKEKLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl----------~~~~~~rl~~y~~~~~~l~~~y~~ 223 (268)
.+||+|||||+..|++.+++. ...|.++.++++.+.+++|+ ++.+++|+..|+++..|+.+||+
T Consensus 79 ~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli~~y~- 157 (178)
T COG0563 79 AGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLIEYYS- 157 (178)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccchhhhhe-
Confidence 399999999999999999865 47899999999999999998 34568999999999999999997
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHH
Q 024390 224 QKKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 224 ~~~l~~Ida~~s~eev~~~I~~~L 247 (268)
+.||+.++++++++.+.+.+
T Consensus 158 ----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 158 ----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ----eeccCCCCHHHHHHHHHHhh
Confidence 78999999999999998875
No 20
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.96 E-value=9.8e-28 Score=202.05 Aligned_cols=170 Identities=22% Similarity=0.414 Sum_probs=151.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
.++|+|+|+|||||||+|+.|++.+|+.++++|+++++.....++.++.++..+.+|..+|.+.+...+.+++.... ..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAAL-GT 81 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccc-Cc
Confidence 46799999999999999999999999999999999999877777888899999999999999998898888876542 35
Q ss_pred ccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHHHHHh
Q 024390 158 EIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 158 ~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~y~~ 223 (268)
+.+||+||||++..|++.+... ..|+++|+|++|.+++.+|+ ++.+.+|+..|.++..++.++|..
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~ 161 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYET 161 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 7899999999999999988653 57999999999999999998 235789999999999999999987
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 224 QKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 224 ~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
.+.++.||++.++++++++|...|.
T Consensus 162 ~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 162 KGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh
Confidence 7888999999999999999999886
No 21
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.96 E-value=2.4e-28 Score=206.89 Aligned_cols=158 Identities=33% Similarity=0.554 Sum_probs=144.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCcc
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~ 159 (268)
+|+|+|+|||||||+|+.|++++|+.|+++++++++.....++.+..+++++.+|..+|++++..++..++.... ...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~--~~~ 78 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD--CKK 78 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc--ccC
Confidence 489999999999999999999999999999999999988888899999999999999999999999999998752 468
Q ss_pred EEEEcCCcCCHHHHHHHHhhc----CCCeEEEEecCHHHHHhhhh--------------------------------HHH
Q 024390 160 GFILDGLPRSRIQAEILDQLA----EIDLVVNFKCADNFIVTNRG--------------------------------GSL 203 (268)
Q Consensus 160 g~IlDGfPr~~~qa~~l~~~~----~~d~vV~Ld~~~e~l~~Rl~--------------------------------~~~ 203 (268)
+||+||||++..|++.|++.. .++++|+|++|++++.+|+. +.+
T Consensus 79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i 158 (194)
T cd01428 79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETI 158 (194)
T ss_pred CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHH
Confidence 899999999999999998753 78999999999999999971 257
Q ss_pred HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHH
Q 024390 204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVET 239 (268)
Q Consensus 204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev 239 (268)
++|+..|++++.++.+||.+.+.++.||+++++++|
T Consensus 159 ~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 159 KKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 899999999999999999998999999999998864
No 22
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.96 E-value=4.3e-28 Score=209.66 Aligned_cols=172 Identities=35% Similarity=0.599 Sum_probs=159.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++.+++++|+||+||+|+|.+|++.|++.|+++||++|+.+.+++++|.++++++..|+++|+++++.++..++... .
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~--~ 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENP--R 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccc--c
Confidence 67899999999999999999999999999999999999999999999999999999999999999999888888887 3
Q ss_pred CccEEEEcCCcCCHHHHHHHHh-hcCCCeEEEEecCHHHHHhhh------------------------------------
Q 024390 157 GEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIVTNR------------------------------------ 199 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~-~~~~d~vV~Ld~~~e~l~~Rl------------------------------------ 199 (268)
...||++|||||+..|++.+.+ ...+|.||+|++|++.+++|+
T Consensus 92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr 171 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQR 171 (235)
T ss_pred cccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcC
Confidence 5899999999999998877654 578999999999999999987
Q ss_pred ----hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 200 ----GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 200 ----~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
++.++.|++.|+++.+++.+||++.+++..+++.. .++||..|.+.+....
T Consensus 172 ~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~ 226 (235)
T KOG3078|consen 172 EDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKV 226 (235)
T ss_pred ccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhh
Confidence 34678999999999999999999999999999888 9999999999998753
No 23
>PLN02842 nucleotide kinase
Probab=99.96 E-value=1.1e-27 Score=228.11 Aligned_cols=167 Identities=20% Similarity=0.391 Sum_probs=152.3
Q ss_pred EEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCccEE
Q 024390 82 AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGF 161 (268)
Q Consensus 82 vI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~g~ 161 (268)
+|+|+|||||||+|+.|+++||+.||+++++++++++.++++|+.+++++.+|+++|++++..++.+++.+..+ ...||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~-~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDA-KEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccc-cCCcE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999987532 46789
Q ss_pred EEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh------------------------------------hHHHH
Q 024390 162 ILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR------------------------------------GGSLK 204 (268)
Q Consensus 162 IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl------------------------------------~~~~~ 204 (268)
||||||++..|++.|++. ..||+||+|+|+++++++|+ ++.++
T Consensus 80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik 159 (505)
T PLN02842 80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK 159 (505)
T ss_pred EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence 999999999999999876 47999999999999999995 24689
Q ss_pred HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 205 EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 205 ~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
+|++.|++...++.++|. +.++.||+++++++|+++|.+.|....
T Consensus 160 kRL~~Y~~~t~pIl~~Y~--~rl~~IDAsqs~EeVfeeI~~iL~~~L 204 (505)
T PLN02842 160 ARLQIYKKNAEAILSTYS--DIMVKIDGNRPKEVVFEEISSLLSQIQ 204 (505)
T ss_pred HHHHHHHHHhhhHHHhcC--cEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999995 368899999999999999999998553
No 24
>PRK13974 thymidylate kinase; Provisional
Probab=99.79 E-value=3.1e-18 Score=148.14 Aligned_cols=172 Identities=12% Similarity=0.070 Sum_probs=122.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHHHhhcCCCChhHHHHHHHHhc--cCcccHHHHHHHH--HHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVRQDLSPRSSLHKQIANAVNR--GEVVSEDIIFGLL--SKRL 150 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is--~~dlir~~~~~~~~~g~~i~~~l~~--G~~ip~~~~~~ll--~~~l 150 (268)
++.+|+|+|++||||||+++.|++.+.....- ..+.+....+.++++|+.+++++.. |...++.....++ .++.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999988522110 0122233345678899999999863 3344444433333 2221
Q ss_pred Hc------CCccCccEEEE-----------cCCcCCHH--HHHHHHhh----cCCCeEEEEecCHHHHHhhhhH----HH
Q 024390 151 ED------GYYRGEIGFIL-----------DGLPRSRI--QAEILDQL----AEIDLVVNFKCADNFIVTNRGG----SL 203 (268)
Q Consensus 151 ~~------~~~~~~~g~Il-----------DGfPr~~~--qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~----~~ 203 (268)
.. ... ....+|| +|+|+... +...++.. ..||++|+|+||++++++|+.. .+
T Consensus 82 ~~~~~~i~~~l-~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~ 160 (212)
T PRK13974 82 QHVSKIIRPAL-ENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRI 160 (212)
T ss_pred HHHHHHHHHHH-HCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCch
Confidence 11 101 1222555 78887543 35555543 3699999999999999999843 46
Q ss_pred HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
+++...|.+.+.+...+|.+.+.++.||+++++++|+++|.+.|..
T Consensus 161 e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~ 206 (212)
T PRK13974 161 EAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLN 206 (212)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 6777889999999999998888999999999999999999999975
No 25
>PRK03839 putative kinase; Provisional
Probab=99.76 E-value=1.4e-17 Score=139.96 Aligned_cols=148 Identities=18% Similarity=0.220 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|+|||||||+|+.||++++++|+++++++++.- ++.... ..++ ..+..+...+.+. ..+
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~---~~~~-----~~~~~l~~~~~~~--~~~ 65 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKD---DEME-----IDFDKLAYFIEEE--FKE 65 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCC---hhhh-----cCHHHHHHHHHHh--ccC
Confidence 479999999999999999999999999999999987641 111000 0111 1223343444332 124
Q ss_pred cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHH---HHHHHHch--HHHHHHHhCCcEEEEeCC
Q 024390 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKL---EAYAELSK--PLEDYYQKQKKLLEFQVG 233 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl---~~y~~~~~--~l~~~y~~~~~l~~Ida~ 233 (268)
.+||+||+... ...++++|+|+++.+++.+|+..+...+. +....... .+.+.|...+.++.||++
T Consensus 66 ~~vIidG~~~~---------l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~ 136 (180)
T PRK03839 66 KNVVLDGHLSH---------LLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTT 136 (180)
T ss_pred CCEEEEecccc---------ccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 56999997432 34689999999999999999843211111 11111222 233556666778899986
Q ss_pred -CCHHHHHHHHHHHHHhh
Q 024390 234 -SAPVETWQGLLTALHLQ 250 (268)
Q Consensus 234 -~s~eev~~~I~~~L~~~ 250 (268)
.++++++++|.+.|...
T Consensus 137 ~~s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 137 GKTPEEVVEEILELIKSG 154 (180)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 69999999999999854
No 26
>PRK13973 thymidylate kinase; Provisional
Probab=99.73 E-value=1.1e-16 Score=138.52 Aligned_cols=169 Identities=14% Similarity=0.167 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---CCCccch--------hHHHHhhcCCC--ChhHHHHHHHHhccCcccHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISM--------SSIVRQDLSPR--SSLHKQIANAVNRGEVVSEDIIF 143 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l---~~~~is~--------~dlir~~~~~~--~~~g~~i~~~l~~G~~ip~~~~~ 143 (268)
+++.|+|+|++||||||+++.|++++ |+.++.+ ++++|+.+..+ ..++..+...+..+ ...+.+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~ 79 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE 79 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence 47899999999999999999999999 7777766 55666544321 11222222222222 1223444
Q ss_pred HHHHHHHHcCCccCccEEE-----EcCCcCC--HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH--------HH
Q 024390 144 GLLSKRLEDGYYRGEIGFI-----LDGLPRS--RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS--------LK 204 (268)
Q Consensus 144 ~ll~~~l~~~~~~~~~g~I-----lDGfPr~--~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~--------~~ 204 (268)
..+...+..+..-..+.|+ ++|+++. ..++..++.. ..||++|+|+||++++.+|+..+ ++
T Consensus 80 ~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e 159 (213)
T PRK13973 80 EVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFE 159 (213)
T ss_pred HHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchh
Confidence 5556666543210112222 3444443 3355556542 47999999999999999998332 22
Q ss_pred HHHHHHHHHchHHHHHHHh-----CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 205 EKLEAYAELSKPLEDYYQK-----QKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 205 ~rl~~y~~~~~~l~~~y~~-----~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
++-..|.+. +.+.|.+ .++++.||+++++++|+++|.++|...
T Consensus 160 ~~~~~~~~~---~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~ 207 (213)
T PRK13973 160 KEDLAFHEK---RREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQR 207 (213)
T ss_pred hchHHHHHH---HHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 211123222 2222221 236888999999999999999999754
No 27
>PRK08356 hypothetical protein; Provisional
Probab=99.72 E-value=1.6e-16 Score=135.51 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=106.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC----CCC---hhHHH----HHHHHhccCcccH----HHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS----PRS---SLHKQ----IANAVNRGEVVSE----DII 142 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~----~~~---~~g~~----i~~~l~~G~~ip~----~~~ 142 (268)
.+.|+|+|||||||||+|+.|+ ++|+.+|++++.++.... ... ..+.. ..++++.|..+++ +++
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 4689999999999999999996 589999999986654322 111 22222 2466777777774 556
Q ss_pred HHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHH------------HHHHHH
Q 024390 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK------------EKLEAY 210 (268)
Q Consensus 143 ~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~------------~rl~~y 210 (268)
.+++.+.+.. ...|++||+ ++..|++.|.+. ...+|++++|.+++.+|+..+-. .++...
T Consensus 84 ~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~--~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~ 155 (195)
T PRK08356 84 IRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRM--GGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEW 155 (195)
T ss_pred HHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 6666566632 235999999 999999998763 35799999999999999832211 111111
Q ss_pred HHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 211 AELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 211 ~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
+........ +.+...++.+| +.+.+++.++|..++..
T Consensus 156 ~~~l~~~~~-~~~~aD~vI~N-~~~~e~~~~~i~~~~~~ 192 (195)
T PRK08356 156 EEKLYHTTK-LKDKADFVIVN-EGTLEELRKKVEEILRE 192 (195)
T ss_pred HHHhhhhhh-HHHhCcEEEEC-CCCHHHHHHHHHHHHHH
Confidence 111111111 11222233344 68999999999998864
No 28
>PRK01184 hypothetical protein; Provisional
Probab=99.71 E-value=1.2e-15 Score=128.51 Aligned_cols=161 Identities=12% Similarity=0.171 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC-CC-----hhHHHHHHHHhccCcccHHHHHHHHHHHHHc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RS-----SLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~-~~-----~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~ 152 (268)
++|+|+|+|||||||+++ +++++|++++++||++|++... +. .++..+.+... . +..+.+..++...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--E-LGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--H-HChHHHHHHHHHHHHh
Confidence 579999999999999987 7899999999999999998632 21 24554444332 1 1223333444455554
Q ss_pred CCccCccEEEEcCCcCCHHHHHHHHhhcC-CCeEEEEecCHHHHHhhhhHHHH----HHHHHHHHHc-----hHHHHHHH
Q 024390 153 GYYRGEIGFILDGLPRSRIQAEILDQLAE-IDLVVNFKCADNFIVTNRGGSLK----EKLEAYAELS-----KPLEDYYQ 222 (268)
Q Consensus 153 ~~~~~~~g~IlDGfPr~~~qa~~l~~~~~-~d~vV~Ld~~~e~l~~Rl~~~~~----~rl~~y~~~~-----~~l~~~y~ 222 (268)
. .+..+|+||+ +...|.+.+.+... +..+|+++||++++.+|+..+-. ...+.+.+.. .++.+.+.
T Consensus 78 ~---~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~ 153 (184)
T PRK01184 78 K---GDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIA 153 (184)
T ss_pred c---CCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHH
Confidence 2 4678999999 78888888876543 66899999999999999843210 0011222111 11333343
Q ss_pred hCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 223 KQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 223 ~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
..+ +.|+.+.+++++.++|.+.+..
T Consensus 154 ~ad--~vI~N~~~~~~l~~~v~~~~~~ 178 (184)
T PRK01184 154 LAD--YMIVNDSTLEEFRARVRKLLER 178 (184)
T ss_pred hcC--EEEeCCCCHHHHHHHHHHHHHH
Confidence 333 3455577899999999988764
No 29
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.68 E-value=1.3e-15 Score=126.66 Aligned_cols=155 Identities=20% Similarity=0.211 Sum_probs=106.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc-cCcccHHHHHHHHHHHHHcCC--
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR-GEVVSEDIIFGLLSKRLEDGY-- 154 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~-G~~ip~~~~~~ll~~~l~~~~-- 154 (268)
.+.|+++|+|||||||+++.||+.+|++++|+|.+|.+.. ++.+.+++.. |+....+...+++.+.+....
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~------g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~V 75 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT------GMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAV 75 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH------CcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeE
Confidence 4579999999999999999999999999999999998874 4567777664 766667777777776665431
Q ss_pred ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----------HHHHHHHHHHHchHHHHHHHhC
Q 024390 155 YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----------LKEKLEAYAELSKPLEDYYQKQ 224 (268)
Q Consensus 155 ~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----------~~~rl~~y~~~~~~l~~~y~~~ 224 (268)
...+.|.|+ +....+.+. .-..+|||++|.|++++|+... -.+.++...+.. ..+|++.
T Consensus 76 iaTGGG~v~-----~~enr~~l~---~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R---~~~Y~e~ 144 (172)
T COG0703 76 IATGGGAVL-----SEENRNLLK---KRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEER---QPLYREV 144 (172)
T ss_pred EECCCcccc-----CHHHHHHHH---hCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHH---HHHHHHh
Confidence 122333333 333334443 3348999999999999999311 123343333333 4446543
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 225 KKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 225 ~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
..+.++++...+++.++|...|...
T Consensus 145 -a~~~~~~~~~~~~v~~~i~~~l~~~ 169 (172)
T COG0703 145 -ADFIIDTDDRSEEVVEEILEALEGS 169 (172)
T ss_pred -CcEEecCCCCcHHHHHHHHHHHHHh
Confidence 2456676666699999999988753
No 30
>PRK13949 shikimate kinase; Provisional
Probab=99.66 E-value=4.5e-15 Score=124.13 Aligned_cols=151 Identities=16% Similarity=0.233 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHH-hccCcccHHHHHHHHHHHHHcCCccC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l-~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
++|+|+|+|||||||+++.||+.++++++++++++.+... ..+.+.+ ..|+....+...+++.+ +..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~~----- 69 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VAE----- 69 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HHh-----
Confidence 4799999999999999999999999999999998877642 2333433 34555555666666655 332
Q ss_pred ccEEEE-c--CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-----------HHHHHHHHHHHchHHHHHHHh
Q 024390 158 EIGFIL-D--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-----------LKEKLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 158 ~~g~Il-D--GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-----------~~~rl~~y~~~~~~l~~~y~~ 223 (268)
..++|+ + |+|....+.+.+.+ .+++|||++|.+++.+|+... ..+.++.+.+.......+|+.
T Consensus 70 ~~~~vis~Ggg~~~~~~~~~~l~~---~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ 146 (169)
T PRK13949 70 FEDVVISTGGGAPCFFDNMELMNA---SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQ 146 (169)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHh---CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 234555 4 46666666666653 578999999999999998310 011122333334445566766
Q ss_pred CCcEEEEeCC-CCHHHHHHHHHHH
Q 024390 224 QKKLLEFQVG-SAPVETWQGLLTA 246 (268)
Q Consensus 224 ~~~l~~Ida~-~s~eev~~~I~~~ 246 (268)
.+ +.||++ .+++|++++|.+.
T Consensus 147 ad--~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 147 AK--IIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred CC--EEEECCCCCHHHHHHHHHHh
Confidence 33 556754 5899999998865
No 31
>PLN02924 thymidylate kinase
Probab=99.65 E-value=6.3e-15 Score=128.27 Aligned_cols=177 Identities=16% Similarity=0.170 Sum_probs=111.5
Q ss_pred CCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH-HHHHHH
Q 024390 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-IIFGLL 146 (268)
Q Consensus 68 ~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~-~~~~ll 146 (268)
.++++..+.+++.|+|+|++||||||+++.|++.++...+++ ..+++ ...++..|+.+++.+..+..+... ...-..
T Consensus 6 ~~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~ 83 (220)
T PLN02924 6 METESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFS 83 (220)
T ss_pred cCCCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 344445557889999999999999999999999997655544 22332 223577899999988766544332 111112
Q ss_pred HHHHHcC-----CccCccEEEEcCCcCCHH--HH------HHHH---h-hcCCCeEEEEecCHHHHHhhhhHHHHHHHH-
Q 024390 147 SKRLEDG-----YYRGEIGFILDGLPRSRI--QA------EILD---Q-LAEIDLVVNFKCADNFIVTNRGGSLKEKLE- 208 (268)
Q Consensus 147 ~~~l~~~-----~~~~~~g~IlDGfPr~~~--qa------~~l~---~-~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~- 208 (268)
.++.+.. ....+..+|.|.|..+.. |. +++. . ...||++|+|++|++++.+|.... .++++
T Consensus 84 adR~~~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~-~~~~E~ 162 (220)
T PLN02924 84 ANRWEKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYG-GERYEK 162 (220)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-cccccc
Confidence 2222111 012356788898765421 21 1122 1 247999999999999999996311 11221
Q ss_pred -HHHHHchHHHHHHHh--CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 209 -AYAELSKPLEDYYQK--QKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 209 -~y~~~~~~l~~~y~~--~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.|.+. +.+.|.+ ...++.||++.++++|+++|.+.+...
T Consensus 163 ~~~~~r---v~~~Y~~la~~~~~vIDa~~sieeV~~~I~~~I~~~ 204 (220)
T PLN02924 163 LEFQKK---VAKRFQTLRDSSWKIIDASQSIEEVEKKIREVVLDT 204 (220)
T ss_pred HHHHHH---HHHHHHHHhhcCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 33333 2233322 235778899999999999999998753
No 32
>PRK06217 hypothetical protein; Validated
Probab=99.65 E-value=4.1e-15 Score=125.59 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=99.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
+++|+|+|+|||||||+|+.|++++|++++++|+++++.. +.+.+ ...+.+....++.+.+..
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~----- 63 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPFT----------TKRPPEERLRLLLEDLRP----- 63 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCcc----------ccCCHHHHHHHHHHHHhc-----
Confidence 3679999999999999999999999999999999887532 11111 112444445555555532
Q ss_pred ccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH---------------------HHHHHHHHH----
Q 024390 158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL---------------------KEKLEAYAE---- 212 (268)
Q Consensus 158 ~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~---------------------~~rl~~y~~---- 212 (268)
+.+||+||++... .+.+ ...+|.+|+|++|.+++++|+..+. .++...|..
T Consensus 64 ~~~~vi~G~~~~~--~~~~--~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 139 (183)
T PRK06217 64 REGWVLSGSALGW--GDPL--EPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPE 139 (183)
T ss_pred CCCEEEEccHHHH--HHHH--HhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCC
Confidence 4579999997542 2222 2358899999999999999983211 111112221
Q ss_pred --HchHHHHHHHhC-CcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 213 --LSKPLEDYYQKQ-KKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 213 --~~~~l~~~y~~~-~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
.......++... ..++.+++..+++++.++|...|..
T Consensus 140 ~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 140 GRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred cccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 111112222322 4678889889999999999998853
No 33
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.62 E-value=2.7e-14 Score=123.01 Aligned_cols=171 Identities=16% Similarity=0.194 Sum_probs=109.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc-Ccc-cHHHHHHHHHHHHHc--
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-EVV-SEDIIFGLLSKRLED-- 152 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G-~~i-p~~~~~~ll~~~l~~-- 152 (268)
+++.|+|.|+.||||||+++.|++++.-..+ +++....+.++++|+.+++.+.++ ..+ |.-...-+..+|..+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~---~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI---KVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999854433 233344577899999999998886 333 322222222222221
Q ss_pred ----CCccCccEEEEcCCcCCHH--H----------HHHHHhh-c---CCCeEEEEecCHHHHHhhhhHHHH--HHHH--
Q 024390 153 ----GYYRGEIGFILDGLPRSRI--Q----------AEILDQL-A---EIDLVVNFKCADNFIVTNRGGSLK--EKLE-- 208 (268)
Q Consensus 153 ----~~~~~~~g~IlDGfPr~~~--q----------a~~l~~~-~---~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl~-- 208 (268)
..+..+..+|.|.|-.+.. | ...++++ . .||++++||+++++.++|+..+-. .|++
T Consensus 79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~ 158 (208)
T COG0125 79 EVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKE 158 (208)
T ss_pred HHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhH
Confidence 1112355677787654422 3 2222233 2 799999999999999999943211 2333
Q ss_pred --HHHHHchHHH-HHHHhC-CcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 209 --AYAELSKPLE-DYYQKQ-KKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 209 --~y~~~~~~l~-~~y~~~-~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.|++.+.... +...+. +.+++||+++++++|.++|...+...
T Consensus 159 ~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~ 204 (208)
T COG0125 159 DDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKER 204 (208)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHh
Confidence 2333322221 111112 25899999999999999999998764
No 34
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.62 E-value=2.9e-15 Score=122.44 Aligned_cols=161 Identities=20% Similarity=0.154 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|.|.|+|||||||+|+.||+++|++|+|.|+++|+.... .|..+.++-.-.+.-|+ +-..+..+.... ...
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e---~gmsl~ef~~~AE~~p~--iD~~iD~rq~e~--a~~ 73 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE---RGMSLEEFSRYAEEDPE--IDKEIDRRQKEL--AKE 73 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH---cCCCHHHHHHHHhcCch--hhHHHHHHHHHH--HHc
Confidence 57999999999999999999999999999999999997542 23333333322222221 112222222222 135
Q ss_pred cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH--------HHHHHHHHHHHchHHHHHHHh-CC----
Q 024390 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS--------LKEKLEAYAELSKPLEDYYQK-QK---- 225 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~--------~~~rl~~y~~~~~~l~~~y~~-~~---- 225 (268)
.++|++|- -+.++-+ ..+|+.|||.+|.++..+|+..+ ..+-.+.-..+.+--.++|.- .+
T Consensus 74 ~nvVlegr-----LA~Wi~k-~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSi 147 (179)
T COG1102 74 GNVVLEGR-----LAGWIVR-EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSI 147 (179)
T ss_pred CCeEEhhh-----hHHHHhc-cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcccee
Confidence 67899874 2233332 46899999999999999998221 111111111122223344431 11
Q ss_pred cEEEEeCC-CCHHHHHHHHHHHHHhhcc
Q 024390 226 KLLEFQVG-SAPVETWQGLLTALHLQHI 252 (268)
Q Consensus 226 ~l~~Ida~-~s~eev~~~I~~~L~~~~~ 252 (268)
.-++||++ .++++|+.-|...+.....
T Consensus 148 yDLVinTs~~~~~~v~~il~~aid~~~~ 175 (179)
T COG1102 148 YDLVINTSKWDPEEVFLILLDAIDALSI 175 (179)
T ss_pred eEEEEecccCCHHHHHHHHHHHHHhhcc
Confidence 12567764 6899999999998876543
No 35
>PRK13975 thymidylate kinase; Provisional
Probab=99.60 E-value=1.1e-13 Score=117.42 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=96.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHH------HH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKR------LE 151 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~------l~ 151 (268)
++.|+|+|++||||||+++.|+++++..+. ..+.++.+++.+++.+..+..-+..+..-+..++ +.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~--------~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~ 73 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWT--------CEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIE 73 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCee--------ECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999985321 1123345666677766554222221111111111 11
Q ss_pred cCCccCccEEEEcCCcCCHH--H---------HHHHHh-hcCCCeEEEEecCHHHHHhhhhHHH----------HHHHHH
Q 024390 152 DGYYRGEIGFILDGLPRSRI--Q---------AEILDQ-LAEIDLVVNFKCADNFIVTNRGGSL----------KEKLEA 209 (268)
Q Consensus 152 ~~~~~~~~g~IlDGfPr~~~--q---------a~~l~~-~~~~d~vV~Ld~~~e~l~~Rl~~~~----------~~rl~~ 209 (268)
.. . ....+|.|.++.+.. | ...+.. ...||++|+|++|++++.+|+..+- ++..+.
T Consensus 74 ~~-~-~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~ 151 (196)
T PRK13975 74 ED-L-KKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEK 151 (196)
T ss_pred HH-H-cCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 11 1 235688897754321 1 111222 2479999999999999999984321 111122
Q ss_pred HHHHchHHHHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390 210 YAELSKPLEDYYQKQKKLLEFQVG-SAPVETWQGLLTALHLQH 251 (268)
Q Consensus 210 y~~~~~~l~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~~ 251 (268)
|.+... ...|.....++.||++ .++++++++|.+.|..+.
T Consensus 152 y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~ 192 (196)
T PRK13975 152 YLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKI 192 (196)
T ss_pred HHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 222211 1112223357889985 899999999999997653
No 36
>PRK08233 hypothetical protein; Provisional
Probab=99.59 E-value=3.5e-14 Score=118.70 Aligned_cols=165 Identities=13% Similarity=0.156 Sum_probs=97.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++++|+|.|+|||||||+|+.|++.++...+...|..+.... ...+...+..|... +......+.+.+......
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNC-----PEDICKWIDKGANY-SEWVLTPLIKDIQELIAK 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccC-----chhhhhhhhccCCh-hhhhhHHHHHHHHHHHcC
Confidence 457899999999999999999999997444333333332111 11233344444433 222223333333321101
Q ss_pred CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH---------HHHHHHHHHHHHchHHHHH-HHh--C
Q 024390 157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG---------SLKEKLEAYAELSKPLEDY-YQK--Q 224 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~---------~~~~rl~~y~~~~~~l~~~-y~~--~ 224 (268)
....+|+.++|......+ +. ..+|++|+|++|.+++++|... .+.+++..|.....+.... +.+ .
T Consensus 76 ~~~~~vivd~~~~~~~~~-~~--~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 152 (182)
T PRK08233 76 SNVDYIIVDYPFAYLNSE-MR--QFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKP 152 (182)
T ss_pred CCceEEEEeeehhhccHH-HH--HHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCcc
Confidence 123555544565432222 22 2478999999999999888622 2345566666655554211 111 1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 225 KKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 225 ~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
...+.||++.++++++++|...|...
T Consensus 153 ~~~~vId~~~~~e~i~~~i~~~l~~~ 178 (182)
T PRK08233 153 NADIVLDGALSVEEIINQIEEELYRR 178 (182)
T ss_pred CCeEEEcCCCCHHHHHHHHHHHHHhC
Confidence 34677999999999999999999865
No 37
>PRK13948 shikimate kinase; Provisional
Probab=99.56 E-value=1.8e-13 Score=115.75 Aligned_cols=157 Identities=16% Similarity=0.082 Sum_probs=102.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
++..|+++|+|||||||+++.|++++|..+||+|.++++.. |..+.+++. .|+....+....++...+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l~~~--- 79 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRLTRL--- 79 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 55679999999999999999999999999999998887763 344555443 46555555666666554432
Q ss_pred cCccEEEEc--CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----HH--HHHHHHHHHchHHHHHHHhCCcE
Q 024390 156 RGEIGFILD--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----LK--EKLEAYAELSKPLEDYYQKQKKL 227 (268)
Q Consensus 156 ~~~~g~IlD--GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----~~--~rl~~y~~~~~~l~~~y~~~~~l 227 (268)
...+|-- |.+....+.+.+. ....+|||+++.+++.+|+... +. ...+...+.......+|....
T Consensus 80 --~~~VIa~GgG~v~~~~n~~~l~---~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~-- 152 (182)
T PRK13948 80 --DYAVISLGGGTFMHEENRRKLL---SRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQAT-- 152 (182)
T ss_pred --CCeEEECCCcEEcCHHHHHHHH---cCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC--
Confidence 1223322 3443344444444 3467999999999999998311 00 111222333333455565422
Q ss_pred EEEeC-CCCHHHHHHHHHHHHHh
Q 024390 228 LEFQV-GSAPVETWQGLLTALHL 249 (268)
Q Consensus 228 ~~Ida-~~s~eev~~~I~~~L~~ 249 (268)
+.|++ +.+++++.++|.+.+..
T Consensus 153 ~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 153 IHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 34564 57899999999999876
No 38
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.55 E-value=2.5e-13 Score=115.78 Aligned_cols=170 Identities=14% Similarity=0.116 Sum_probs=98.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc--cCcccHHHHHHHHHHHHHcCC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR--GEVVSEDIIFGLLSKRLEDGY 154 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~--G~~ip~~~~~~ll~~~l~~~~ 154 (268)
+++.|+|.|++||||||+++.|++.++..... ..+.. .+.+...++.+++.+.. ....+.......+.++.....
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~--~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 78 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRD--VVFTR-EPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLE 78 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCc--eeEee-CCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999987432111 01111 12345677777777763 222222222211222211100
Q ss_pred ------ccCccEEEEcCCcCCH------------HHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH-----HHHHH
Q 024390 155 ------YRGEIGFILDGLPRSR------------IQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS-----LKEKL 207 (268)
Q Consensus 155 ------~~~~~g~IlDGfPr~~------------~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~-----~~~rl 207 (268)
...+..+|+|.++.+. .+...+... ..||++|+|++|++++.+|+..+ ++.+.
T Consensus 79 ~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~ 158 (205)
T PRK00698 79 EVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQEG 158 (205)
T ss_pred HHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhh
Confidence 1235678888544331 122233322 46999999999999999998433 22222
Q ss_pred HHHHHHchHHHH-HHHh-CCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 208 EAYAELSKPLED-YYQK-QKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 208 ~~y~~~~~~l~~-~y~~-~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
..|.+....... ...+ ...++.||+++++++++++|.+.+..
T Consensus 159 ~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~ 202 (205)
T PRK00698 159 LDFFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKA 202 (205)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 233333222111 1111 23578899999999999999998864
No 39
>PRK08118 topology modulation protein; Reviewed
Probab=99.55 E-value=6.2e-14 Score=117.00 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
++|+|+|+|||||||+|+.|++.++++++++|++++..- ...++++...+++.+.+. .
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~----------------w~~~~~~~~~~~~~~~~~------~ 59 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN----------------WEGVPKEEQITVQNELVK------E 59 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC----------------CcCCCHHHHHHHHHHHhc------C
Confidence 579999999999999999999999999999999886521 112344445555554443 3
Q ss_pred cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
.+||+||.+..... ..+ ..+|.+|+|++|.++++.|+
T Consensus 60 ~~wVidG~~~~~~~-~~l---~~~d~vi~Ld~p~~~~~~R~ 96 (167)
T PRK08118 60 DEWIIDGNYGGTMD-IRL---NAADTIIFLDIPRTICLYRA 96 (167)
T ss_pred CCEEEeCCcchHHH-HHH---HhCCEEEEEeCCHHHHHHHH
Confidence 57999995442221 122 35899999999999999998
No 40
>PRK13947 shikimate kinase; Provisional
Probab=99.54 E-value=1.8e-13 Score=113.70 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
++|+|+|+|||||||+|+.||+.+|+++++.+.++++.. + ..+.+.+. .|+....+....++.. +...
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g----~~~~~~~~~~ge~~~~~~e~~~~~~-l~~~---- 70 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--G----MTVAEIFEKDGEVRFRSEEKLLVKK-LARL---- 70 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--C----CcHHHHHHHhChHHHHHHHHHHHHH-Hhhc----
Confidence 369999999999999999999999999999999887763 2 22333332 2433333333344433 3221
Q ss_pred ccEEEEc--CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----------HHHHHHHHHHHchHHHHHHHhCC
Q 024390 158 EIGFILD--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----------LKEKLEAYAELSKPLEDYYQKQK 225 (268)
Q Consensus 158 ~~g~IlD--GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----------~~~rl~~y~~~~~~l~~~y~~~~ 225 (268)
...+|-. |++....+.+.+.+ .+.+|||+++++.+.+|+..+ ..+++.. .......+|...+
T Consensus 71 ~~~vi~~g~g~vl~~~~~~~l~~---~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~---~~~~r~~~y~~ad 144 (171)
T PRK13947 71 KNLVIATGGGVVLNPENVVQLRK---NGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKE---LLKEREPFYDFAD 144 (171)
T ss_pred CCeEEECCCCCcCCHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHH---HHHHHHHHHHhcC
Confidence 1122211 23333334444443 467999999999999998321 1222221 1222334454322
Q ss_pred cEEEEe-CCCCHHHHHHHHHH-HHHhh
Q 024390 226 KLLEFQ-VGSAPVETWQGLLT-ALHLQ 250 (268)
Q Consensus 226 ~l~~Id-a~~s~eev~~~I~~-~L~~~ 250 (268)
+.|| ++.+++++.++|.+ ++..+
T Consensus 145 --~~Idt~~~~~~~i~~~I~~~~~~~~ 169 (171)
T PRK13947 145 --YTIDTGDMTIDEVAEEIIKAYLKLK 169 (171)
T ss_pred --EEEECCCCCHHHHHHHHHHHHHhhh
Confidence 3455 56899999999999 66544
No 41
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.54 E-value=1.9e-13 Score=115.96 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCc--ccHHH---H-----HHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV--VSEDI---I-----FGLL 146 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~--ip~~~---~-----~~ll 146 (268)
+++.|+|.|+|||||||+++.|++.++..-. .++....+.+++.++.+++.+..+.. ..... + ...+
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~---~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~ 78 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGY---DVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHL 78 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999853210 01111122345667777776543321 21111 0 0111
Q ss_pred HHHHHcCCccCccEEEEcCC----------cCCH--HHHHHHHh-hcC--CCeEEEEecCHHHHHhhhhHHH------HH
Q 024390 147 SKRLEDGYYRGEIGFILDGL----------PRSR--IQAEILDQ-LAE--IDLVVNFKCADNFIVTNRGGSL------KE 205 (268)
Q Consensus 147 ~~~l~~~~~~~~~g~IlDGf----------Pr~~--~qa~~l~~-~~~--~d~vV~Ld~~~e~l~~Rl~~~~------~~ 205 (268)
.+.+... ...+.-+|+|.+ ++.. .+...+.. ... ||++|+|++|++.+.+|+..+- .+
T Consensus 79 ~~~i~~~-l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~ 157 (195)
T TIGR00041 79 EDKIKPA-LAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFE 157 (195)
T ss_pred HHHHHHH-HhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHH
Confidence 1112111 112445677743 3221 12233332 233 9999999999999999984321 11
Q ss_pred HHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHH
Q 024390 206 KLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGL 243 (268)
Q Consensus 206 rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I 243 (268)
..+.++.......+.+++...++.||+++++++|.++|
T Consensus 158 ~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 158 KLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence 12222222222333333344688999999999998875
No 42
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.54 E-value=1.9e-13 Score=113.77 Aligned_cols=152 Identities=13% Similarity=0.136 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
..|+|+|+|||||||+|+.||+++|+++++.+.++..... ..+.+++. .|.....+...+++. .+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g------~~~~~~~~~~g~~~~~~~e~~~~~-~~~~----- 70 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN------MTVAEIVEREGWAGFRARESAALE-AVTA----- 70 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC------CCHHHHHHHHCHHHHHHHHHHHHH-HhcC-----
Confidence 4689999999999999999999999999999988877532 11222222 222112222333332 2221
Q ss_pred ccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-------------HHHHHHHHHHHchHHHHHHH
Q 024390 158 EIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------------LKEKLEAYAELSKPLEDYYQ 222 (268)
Q Consensus 158 ~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-------------~~~rl~~y~~~~~~l~~~y~ 222 (268)
...+|-.| ++....+.+.+. ..+++|+|++|++++.+|+..+ ..+... +.......+|.
T Consensus 71 ~~~vi~~ggg~vl~~~~~~~l~---~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~---~~~~~r~~~y~ 144 (171)
T PRK03731 71 PSTVIATGGGIILTEENRHFMR---NNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVA---EVLAEREALYR 144 (171)
T ss_pred CCeEEECCCCccCCHHHHHHHH---hCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHH---HHHHHHHHHHH
Confidence 22233333 333334444443 4678999999999999998432 112222 22223344565
Q ss_pred hCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 223 KQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 223 ~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
+.. .+.||+++++++++++|.+.+..
T Consensus 145 ~~a-~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 145 EVA-HHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred HhC-CEEEcCCCCHHHHHHHHHHHHhc
Confidence 432 36789999999999999998864
No 43
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.53 E-value=3.6e-14 Score=128.31 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=98.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++.|++.|+|||||||+|+.|++++ ++.++|.|++ +..+......+.. .+...++..-.+.....+...+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~----- 73 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK----- 73 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH-----
Confidence 4678999999999999999999999 9999999765 4443221111100 00000000001222233333333
Q ss_pred CccEEEEcCCcCCHHHHHHHHhh---cCCCe-EEEEecCHHHHHhhh---------hHHHH---HHHHHHHHHchHHHHH
Q 024390 157 GEIGFILDGLPRSRIQAEILDQL---AEIDL-VVNFKCADNFIVTNR---------GGSLK---EKLEAYAELSKPLEDY 220 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~---~~~d~-vV~Ld~~~e~l~~Rl---------~~~~~---~rl~~y~~~~~~l~~~ 220 (268)
.+..+|+|+++.+..+.+.+... ....+ +|+|+++.+++.+|+ .+.++ +|++.|...+.|+...
T Consensus 74 ~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~ 153 (300)
T PHA02530 74 SGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMFKQMKEYRGLVWPVYTA 153 (300)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHHHHHHHhcCCCCceecc
Confidence 35679999999998887776543 22333 799999999999998 23344 7777887787888666
Q ss_pred HHhCCcEEEEeCCCCHHH
Q 024390 221 YQKQKKLLEFQVGSAPVE 238 (268)
Q Consensus 221 y~~~~~l~~Ida~~s~ee 238 (268)
+....+++.+|.++++.+
T Consensus 154 ~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 154 DPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred CCCCCCEEEEECCCcCcC
Confidence 654456777787666543
No 44
>PRK13946 shikimate kinase; Provisional
Probab=99.52 E-value=6.8e-13 Score=112.23 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=99.9
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (268)
+..++.|+++|+|||||||+++.||+++|+++++++.++.+.. +......+. ..|+....+...+++...+..
T Consensus 7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~---~~ge~~~~~~e~~~l~~l~~~-- 79 (184)
T PRK13946 7 ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFA---AYGEPEFRDLERRVIARLLKG-- 79 (184)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHH---HHCHHHHHHHHHHHHHHHHhc--
Confidence 3466789999999999999999999999999999998776653 222222111 123333333444555444332
Q ss_pred ccCccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH-------HHHHHHHHHHchHHHHHHHhCC
Q 024390 155 YRGEIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-------KEKLEAYAELSKPLEDYYQKQK 225 (268)
Q Consensus 155 ~~~~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-------~~rl~~y~~~~~~l~~~y~~~~ 225 (268)
+..+|..| .+......+.+. .-+++|||++|.+++.+|+..+- ..-.+.+++.......+|...
T Consensus 80 ---~~~Vi~~ggg~~~~~~~r~~l~---~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~- 152 (184)
T PRK13946 80 ---GPLVLATGGGAFMNEETRAAIA---EKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEA- 152 (184)
T ss_pred ---CCeEEECCCCCcCCHHHHHHHH---cCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhC-
Confidence 23455554 223333333433 34689999999999999993211 011123333333444556543
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 226 KLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 226 ~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.+...+.+.+++++.+.|.+.+...
T Consensus 153 dl~i~~~~~~~~~~~~~i~~~i~~~ 177 (184)
T PRK13946 153 DLTVASRDVPKEVMADEVIEALAAY 177 (184)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3433345789999999999998753
No 45
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.51 E-value=1.2e-12 Score=110.44 Aligned_cols=163 Identities=12% Similarity=0.076 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccC---cccHHHH-------HHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE---VVSEDII-------FGL 145 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~---~ip~~~~-------~~l 145 (268)
|.|+|+|++||||||+++.|++.+ |..++.+.. +..+..++.+++++..+. ..+.... ...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 554443321 223345666666655432 1111111 011
Q ss_pred HHHHHHcCCccCccEEEEcCCcCCH------------HHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHHHH-----
Q 024390 146 LSKRLEDGYYRGEIGFILDGLPRSR------------IQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGSLK----- 204 (268)
Q Consensus 146 l~~~l~~~~~~~~~g~IlDGfPr~~------------~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~~----- 204 (268)
+.+.+... ...+..+|+|.++.+. .+...+.. ...|+.+|+|+++++++.+|+..+-.
T Consensus 75 ~~~~~~~~-~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~ 153 (200)
T cd01672 75 VEEVIKPA-LARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDE 153 (200)
T ss_pred HHHHHHHH-HhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhh
Confidence 11111110 1246678888554321 22233322 23689999999999999999943211
Q ss_pred HHHHHHHHHchHHHHHHHhC--CcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 205 EKLEAYAELSKPLEDYYQKQ--KKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 205 ~rl~~y~~~~~~l~~~y~~~--~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
.....|.+........+... ..++.||++.+++++.++|.+.|.
T Consensus 154 ~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 154 QEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 12233444333322222211 357899999999999999998875
No 46
>PRK00625 shikimate kinase; Provisional
Probab=99.50 E-value=3.9e-13 Score=112.86 Aligned_cols=158 Identities=14% Similarity=0.096 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
|+|+|+|+|||||||+++.||+++|++++|+|+++++..... ....+.+.++ .|+....+.....+.. +. .
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l~~-l~-----~ 72 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLALTS-LP-----V 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHHHH-hc-----c
Confidence 479999999999999999999999999999999998764321 0112444332 3433333333344422 21 1
Q ss_pred ccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH----HHHHHHHHHHchHHHHHHHh-CCcEEEE
Q 024390 158 EIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL----KEKLEAYAELSKPLEDYYQK-QKKLLEF 230 (268)
Q Consensus 158 ~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~----~~rl~~y~~~~~~l~~~y~~-~~~l~~I 230 (268)
...+|..| .+......+. +..-..||+|++|.+++.+|+..+- ....+.+.+........|++ .+..+.+
T Consensus 73 ~~~VIs~GGg~~~~~e~~~~---l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ad~~i~~ 149 (173)
T PRK00625 73 IPSIVALGGGTLMIEPSYAH---IRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSIADYIFSL 149 (173)
T ss_pred CCeEEECCCCccCCHHHHHH---HhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHHCCEEEeC
Confidence 23344444 2233322233 3345689999999999999984320 00012223333334455655 3344433
Q ss_pred e----C-CCCHHHHHHHHHHHH
Q 024390 231 Q----V-GSAPVETWQGLLTAL 247 (268)
Q Consensus 231 d----a-~~s~eev~~~I~~~L 247 (268)
+ + +.+...+.+.+...|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 150 DHVAETSSESLMRACQSFCTLL 171 (173)
T ss_pred CCcccCCCCCHHHHHHHHHHHh
Confidence 3 2 356667777666554
No 47
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.49 E-value=9.3e-13 Score=108.98 Aligned_cols=145 Identities=18% Similarity=0.239 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC-CCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~-~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
|+|+|.|.||+||||+|++|+ ++|+.++++.+++.+.-- .+.+ . ......+..+.+...+...+ .
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~d--e-----~r~s~~vD~d~~~~~le~~~------~ 66 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYD--E-----LRKSVIVDVDKLRKRLEELL------R 66 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccC--C-----ccceEEeeHHHHHHHHHHHh------c
Confidence 679999999999999999999 999999999999877521 0000 0 00011233333333333332 2
Q ss_pred ccEEEEcCCcCCHHHHHHHHhhcC-CCeEEEEecCHHHHHhhhhH------HHHHHHHHHHHHchHH--HHHHHhCCcEE
Q 024390 158 EIGFILDGLPRSRIQAEILDQLAE-IDLVVNFKCADNFIVTNRGG------SLKEKLEAYAELSKPL--EDYYQKQKKLL 228 (268)
Q Consensus 158 ~~g~IlDGfPr~~~qa~~l~~~~~-~d~vV~Ld~~~e~l~~Rl~~------~~~~rl~~y~~~~~~l--~~~y~~~~~l~ 228 (268)
..+.|+|+. +.++.+ +|+||.|.|+++++.+|+.+ .+.+.++ .+...+ .+.......++
T Consensus 67 ~~~~Ivd~H---------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENve---AEi~~vi~~EA~E~~~~v~ 134 (180)
T COG1936 67 EGSGIVDSH---------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVE---AEILDVILIEAVERFEAVI 134 (180)
T ss_pred cCCeEeech---------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHHHHHhcCceE
Confidence 457888875 223334 89999999999999999943 3333332 111111 11222235788
Q ss_pred EEeC-CCCHHHHHHHHHHHHHh
Q 024390 229 EFQV-GSAPVETWQGLLTALHL 249 (268)
Q Consensus 229 ~Ida-~~s~eev~~~I~~~L~~ 249 (268)
.||. +.+++++.+.|.+++..
T Consensus 135 evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 135 EVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred EEECCCCCHHHHHHHHHHHHcc
Confidence 8986 68999999999999984
No 48
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.49 E-value=5.9e-13 Score=130.03 Aligned_cols=164 Identities=13% Similarity=0.183 Sum_probs=112.4
Q ss_pred ccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHH-hccCcccHHHHHHHHHHHHHc
Q 024390 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLED 152 (268)
Q Consensus 74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l-~~G~~ip~~~~~~ll~~~l~~ 152 (268)
.|.|..+|+++|+|||||||+++.||+.+|++++|+|+.+.+.. |+.+.+++ ..|+....+...+++.+.+..
T Consensus 2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~ 75 (542)
T PRK14021 2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED 75 (542)
T ss_pred CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788899999999999999999999999999999999998873 55677766 567777777777777654432
Q ss_pred CCccCccEEEEc--CCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhhH---------HHHHHHHHHHHHchHHHHH
Q 024390 153 GYYRGEIGFILD--GLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGG---------SLKEKLEAYAELSKPLEDY 220 (268)
Q Consensus 153 ~~~~~~~g~IlD--GfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~~---------~~~~rl~~y~~~~~~l~~~ 220 (268)
...+|-. |.+......+.|.++ ..-..+|||+++.+++.+|+.. ...+++....+. ...+
T Consensus 76 -----~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~---R~~~ 147 (542)
T PRK14021 76 -----FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQ---RDPV 147 (542)
T ss_pred -----CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHH---HHHH
Confidence 1223322 344444444544433 2345899999999999999721 112334333333 3445
Q ss_pred HHhCCcEEEEeC-CCCHHHHHHHHHHHHHhhcc
Q 024390 221 YQKQKKLLEFQV-GSAPVETWQGLLTALHLQHI 252 (268)
Q Consensus 221 y~~~~~l~~Ida-~~s~eev~~~I~~~L~~~~~ 252 (268)
|.+-.. +.||+ +.+++++.++|.+.+....+
T Consensus 148 Y~~~Ad-~~i~~~~~~~~~~~~~i~~~~~~~~~ 179 (542)
T PRK14021 148 FRQVAN-VHVHTRGLTPQAAAKKLIDMVAERTV 179 (542)
T ss_pred HHhhCC-EEEECCCCCHHHHHHHHHHHHHhcce
Confidence 654222 34554 57999999999998876443
No 49
>PRK07933 thymidylate kinase; Validated
Probab=99.47 E-value=9.7e-13 Score=113.99 Aligned_cols=160 Identities=19% Similarity=0.119 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC---CccchhHHHHhhcCCCChhHHHHHHHHhcc--Cc--ccHHHHH--------
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEV---PRISMSSIVRQDLSPRSSLHKQIANAVNRG--EV--VSEDIIF-------- 143 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~---~~is~~dlir~~~~~~~~~g~~i~~~l~~G--~~--ip~~~~~-------- 143 (268)
|.|+|.|+.||||||+++.|++++.- .++-+ +.....+++.++.+++.+... .. -+.....
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 57999999999999999999999843 22111 110012344556666655431 11 1111111
Q ss_pred --HHHHHHHHcCCccCccEEEEcCCcCCHH--HH---------------HHHHh----hcCCCeEEEEecCHHHHHhhhh
Q 024390 144 --GLLSKRLEDGYYRGEIGFILDGLPRSRI--QA---------------EILDQ----LAEIDLVVNFKCADNFIVTNRG 200 (268)
Q Consensus 144 --~ll~~~l~~~~~~~~~g~IlDGfPr~~~--qa---------------~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~ 200 (268)
..|...+. .+..+|.|.|..+.. |. ..++. ...||++|+|+++++++.+|+.
T Consensus 77 ~~~~I~p~l~-----~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~ 151 (213)
T PRK07933 77 ARDELAGLLA-----AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERAR 151 (213)
T ss_pred hHHHHHHHHh-----CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHH
Confidence 11222222 345678887765431 21 11221 1269999999999999999984
Q ss_pred HHH-------HHHHH---HHHHHchHHH-HHHHh--CCcEEEEeCCCCHHHHHHHHHHHH
Q 024390 201 GSL-------KEKLE---AYAELSKPLE-DYYQK--QKKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 201 ~~~-------~~rl~---~y~~~~~~l~-~~y~~--~~~l~~Ida~~s~eev~~~I~~~L 247 (268)
.+- ..+++ .|.+...... +...+ ...++.||+++++++|.++|++.|
T Consensus 152 ~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 152 RRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred hhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 431 11222 3443333322 22222 237888999999999999999876
No 50
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.47 E-value=1.3e-12 Score=105.52 Aligned_cols=148 Identities=20% Similarity=0.300 Sum_probs=100.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
+..++|+|.|.||+||||+|++||+.+|+.+|.+++++++.--- ....+.- +-..++++-+...|..++.+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~-~gyDE~y-----~c~i~DEdkv~D~Le~~m~~--- 75 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLY-EGYDEEY-----KCHILDEDKVLDELEPLMIE--- 75 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcch-hcccccc-----cCccccHHHHHHHHHHHHhc---
Confidence 45678999999999999999999999999999999999886210 0000000 11245677788888887764
Q ss_pred cCccEEEEcC-----CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH------HHHHHH--HHHHHHchHHHHHHH
Q 024390 156 RGEIGFILDG-----LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG------SLKEKL--EAYAELSKPLEDYYQ 222 (268)
Q Consensus 156 ~~~~g~IlDG-----fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~------~~~~rl--~~y~~~~~~l~~~y~ 222 (268)
.|.|+|= ||. -.+|+||.|.||.+++.+|+.. .+++.+ +.|.-......+.|+
T Consensus 76 ---Gg~IVDyHgCd~Fpe-----------rwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~ 141 (176)
T KOG3347|consen 76 ---GGNIVDYHGCDFFPE-----------RWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYS 141 (176)
T ss_pred ---CCcEEeecccCccch-----------hheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcC
Confidence 5777772 321 1468999999999999999942 233222 244444445666676
Q ss_pred hCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 223 KQKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 223 ~~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
. +.++.+.++ +++++...|..++.
T Consensus 142 ~-~iV~eL~s~-~~Eem~~ni~ri~~ 165 (176)
T KOG3347|consen 142 P-KIVVELQSE-TKEEMESNISRILN 165 (176)
T ss_pred C-cceeecCcC-CHHHHHHHHHHHHH
Confidence 4 367777644 44777766655544
No 51
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.46 E-value=1.4e-12 Score=107.97 Aligned_cols=156 Identities=20% Similarity=0.224 Sum_probs=92.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
.++.|+|+|+|||||||+|+.||+.+|+++++.+++++..... +..... -..|.....+....++......
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~---~~~g~~~~~~~~~~~~~~l~~~---- 73 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIF---EEEGEAAFRELEEEVLAELLAR---- 73 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHH---HHHCHHHHHHHHHHHHHHHHhc----
Confidence 4568999999999999999999999999999999988775432 222111 1123322233334444443332
Q ss_pred CccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----------HHHHHHHHHHHchHHHHHHHhC
Q 024390 157 GEIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----------LKEKLEAYAELSKPLEDYYQKQ 224 (268)
Q Consensus 157 ~~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----------~~~rl~~y~~~~~~l~~~y~~~ 224 (268)
...+|..| +.........|. ....+|+|++|.+.+.+|+..+ ..+.+..+..... ..|...
T Consensus 74 -~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~ 146 (175)
T PRK00131 74 -HNLVISTGGGAVLREENRALLR---ERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERD---PLYEEV 146 (175)
T ss_pred -CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHH---HHHHhh
Confidence 12233333 111122223332 3468999999999999998421 1122222222222 223321
Q ss_pred CcEEEEeC-CCCHHHHHHHHHHHHHh
Q 024390 225 KKLLEFQV-GSAPVETWQGLLTALHL 249 (268)
Q Consensus 225 ~~l~~Ida-~~s~eev~~~I~~~L~~ 249 (268)
.. +.||+ +.+++++.+.|.+.+..
T Consensus 147 ~d-l~idt~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 147 AD-ITVETDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred cC-eEEeCCCCCHHHHHHHHHHHHHh
Confidence 12 45664 68999999999998864
No 52
>PRK04182 cytidylate kinase; Provisional
Probab=99.45 E-value=5.2e-12 Score=105.26 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|.|+|||||||+|+.|++++|+++++++++++........ .+.+....++..+. +...+...+.... ..+
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~ 74 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGM---SLEEFNKYAEEDPE--IDKEIDRRQLEIA-EKE 74 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCC---CHHHHHHHhhcCch--HHHHHHHHHHHHH-hcC
Confidence 57999999999999999999999999999999988875432111 11112222222221 1111222221110 034
Q ss_pred cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-------HHHHHHHHH-HHchHHHHHHHh-----CC
Q 024390 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LKEKLEAYA-ELSKPLEDYYQK-----QK 225 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-------~~~rl~~y~-~~~~~l~~~y~~-----~~ 225 (268)
.++|++|.-.. .+.. ..++++|+|++|.+++++|+..+ ..+.+..-. ........+|.. ..
T Consensus 75 ~~~Vi~g~~~~-----~~~~-~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 148 (180)
T PRK04182 75 DNVVLEGRLAG-----WMAK-DYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSI 148 (180)
T ss_pred CCEEEEEeecc-----eEec-CCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 57888873110 1111 12789999999999999998321 111111100 011112233321 11
Q ss_pred cEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390 226 KLLEFQVG-SAPVETWQGLLTALHLQ 250 (268)
Q Consensus 226 ~l~~Ida~-~s~eev~~~I~~~L~~~ 250 (268)
.-+.||++ .+++++.+.|.+.+...
T Consensus 149 ~d~~idt~~~~~~~~~~~I~~~~~~~ 174 (180)
T PRK04182 149 YDLVINTSRWDPEGVFDIILTAIDKL 174 (180)
T ss_pred ccEEEECCCCCHHHHHHHHHHHHHHH
Confidence 23567764 69999999999998753
No 53
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.45 E-value=2.4e-12 Score=110.05 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc------cCcccH-------------
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR------GEVVSE------------- 139 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~------G~~ip~------------- 139 (268)
++|.|+|++||||||+++.|++.+|++++|+|++.++...++++.++.+.+.+.. |..+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 4799999999999999999999999999999999999988888888888777632 311221
Q ss_pred -----HHHHHHHH----HHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HH
Q 024390 140 -----DIIFGLLS----KRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SL 203 (268)
Q Consensus 140 -----~~~~~ll~----~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~ 203 (268)
+++-.++. +++... ....-+|+| .|.-.+. .+. ..+|.+|+++||.++.++|+.+ ..
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~--~~~~~vv~e-~pll~E~--~~~--~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~ 154 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQL--KSNPIVVLV-IPLLFEA--KLT--DLCSEIWVVDCSPEQQLQRLIKRDGLTEEEA 154 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhc--CCCCEEEEE-eHHhcCc--chH--hCCCEEEEEECCHHHHHHHHHHcCCCCHHHH
Confidence 11112222 222221 112334454 3321110 011 2579999999999999999832 34
Q ss_pred HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
..|+.. +. +... ...... +.|+.+.+++++.+++.+++.
T Consensus 155 ~~ri~~---Q~-~~~~-k~~~aD-~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 155 EARINA---QW-PLEE-KVKLAD-VVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred HHHHHh---CC-CHHH-HHhhCC-EEEECCCCHHHHHHHHHHHHh
Confidence 444432 22 1221 111122 356778899999999998764
No 54
>PRK13976 thymidylate kinase; Provisional
Probab=99.45 E-value=4.5e-12 Score=109.57 Aligned_cols=171 Identities=11% Similarity=0.008 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc-CcccHHHHHHHHHHHHHcC----
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-EVVSEDIIFGLLSKRLEDG---- 153 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G-~~ip~~~~~~ll~~~l~~~---- 153 (268)
+.|+|+|++||||||+++.|++.+.-.. .....+-...+.++.+++.+++.+... ..-|.....-++.+|.+..
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~-g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I 79 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIY-GENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVI 79 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhc-CCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999885310 000111112345677888888877642 2222222112222222110
Q ss_pred --CccCccEEEEcCCcCCH------------HHHHHHHhh---cCCCeEEEEecCHHHHHhhhhH-HHHHHHHHHHHHch
Q 024390 154 --YYRGEIGFILDGLPRSR------------IQAEILDQL---AEIDLVVNFKCADNFIVTNRGG-SLKEKLEAYAELSK 215 (268)
Q Consensus 154 --~~~~~~g~IlDGfPr~~------------~qa~~l~~~---~~~d~vV~Ld~~~e~l~~Rl~~-~~~~rl~~y~~~~~ 215 (268)
....+..+|.|.|..+. .....+++. ..||++|+|++|++++++|+.. .++..-..|.+...
T Consensus 80 ~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~l~~v~ 159 (209)
T PRK13976 80 LPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYEFMDLEFYDKVR 159 (209)
T ss_pred HHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchhcccHHHHHHHH
Confidence 01134567777665432 122333332 3699999999999999999832 12222224444443
Q ss_pred HHHHHH-HhC-CcEEEEeC---CCC---HHHHHHHHHHHHHhh
Q 024390 216 PLEDYY-QKQ-KKLLEFQV---GSA---PVETWQGLLTALHLQ 250 (268)
Q Consensus 216 ~l~~~y-~~~-~~l~~Ida---~~s---~eev~~~I~~~L~~~ 250 (268)
.....+ .+. +.++.||+ +++ +++|.++|.+.|...
T Consensus 160 ~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~ 202 (209)
T PRK13976 160 KGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAV 202 (209)
T ss_pred HHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHH
Confidence 332222 222 35777887 345 999999999988654
No 55
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.44 E-value=3.8e-12 Score=108.64 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-----cccH--------------
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-----VVSE-------------- 139 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-----~ip~-------------- 139 (268)
.+|.|+|++||||||+++.|++ +|++++++|++.++...++++..+.+.+.+..+. .+..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5799999999999999999999 9999999999999988877777777776653321 1221
Q ss_pred ----HHHHHHHHHHHHcCC--ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHH
Q 024390 140 ----DIIFGLLSKRLEDGY--YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEK 206 (268)
Q Consensus 140 ----~~~~~ll~~~l~~~~--~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~r 206 (268)
+++-..+.+++.... .....-+|+|. |.-.+ ..+. ..+|.+|+++||+++..+|+.. .+..|
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e--~~~~--~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~r 156 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFE--NGLE--KLVDRVLVVDAPPETQLERLMARDGLSEEEAEAI 156 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhc--CCch--hhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 112222222222110 01123455553 32111 0011 2579999999999999999832 34444
Q ss_pred HHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 207 LEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 207 l~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
+.. +.. ..+.-. . .-+.|+.+.+++++.+++.+++.
T Consensus 157 i~~---Q~~-~~~~~~-~-ad~vI~N~g~~e~l~~qv~~i~~ 192 (194)
T PRK00081 157 IAS---QMP-REEKLA-R-ADDVIDNNGDLEELRKQVERLLQ 192 (194)
T ss_pred HHH---hCC-HHHHHH-h-CCEEEECCCCHHHHHHHHHHHHH
Confidence 442 221 222111 1 12567778899999999998875
No 56
>PRK06762 hypothetical protein; Provisional
Probab=99.44 E-value=4.5e-12 Score=104.96 Aligned_cols=152 Identities=18% Similarity=0.151 Sum_probs=90.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l--~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
++.|+|.|+|||||||+|+.|++++ ++.+++.+. ++..+..... ..+ ....+.+..++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~-~r~~l~~~~~---------~~~-~~~~~~~~~~~~~~~~---- 66 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV-VRRDMLRVKD---------GPG-NLSIDLIEQLVRYGLG---- 66 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH-HHHHhccccC---------CCC-CcCHHHHHHHHHHHHh----
Confidence 5789999999999999999999998 566677654 4443221100 001 0112223333333222
Q ss_pred cCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHHhCC-----c
Q 024390 156 RGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQK-----K 226 (268)
Q Consensus 156 ~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~~~-----~ 226 (268)
.+..+|+|+.-......+.+..+ ..+..+|+|++|.+++.+|...+-. .+....+.+.++|...+ -
T Consensus 67 -~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~----~~~~~~~~l~~~~~~~~~~~~~~ 141 (166)
T PRK06762 67 -HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK----SHEFGEDDMRRWWNPHDTLGVIG 141 (166)
T ss_pred -CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc----cccCCHHHHHHHHhhcCCcCCCC
Confidence 35678899874443333333332 3466899999999999999843321 11111223444442211 2
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHh
Q 024390 227 LLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 227 l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
.+.++.+.++++|+++|...+..
T Consensus 142 ~~~~~~~~~~~~v~~~i~~~~~~ 164 (166)
T PRK06762 142 ETIFTDNLSLKDIFDAILTDIGL 164 (166)
T ss_pred eEEecCCCCHHHHHHHHHHHhcc
Confidence 34456678999999999988753
No 57
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.44 E-value=4.1e-12 Score=106.50 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
..+|+|+|++||||||+++.|++.+|+++++++..+.+... .. +...+. .|+....+...+++.. +..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~----i~~~~~~~g~~~fr~~e~~~l~~-l~~---- 72 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--AD----IGWVFDVEGEEGFRDREEKVINE-LTE---- 72 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cC----HhHHHHHhCHHHHHHHHHHHHHH-HHh----
Confidence 45799999999999999999999999999999987766532 11 222222 2333223333444444 221
Q ss_pred CccEEEEc-C--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH----------HHHHHHHHHHHHchHHHHHHHh
Q 024390 157 GEIGFILD-G--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG----------SLKEKLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 157 ~~~g~IlD-G--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~----------~~~~rl~~y~~~~~~l~~~y~~ 223 (268)
..++|+. | .+.+....+.|. ..+.+|||++|.+++++|+.. ...+.++.+.+.. ..+|++
T Consensus 73 -~~~~vi~~ggg~v~~~~~~~~l~---~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R---~~~Y~~ 145 (172)
T PRK05057 73 -KQGIVLATGGGSVKSRETRNRLS---ARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANER---NPLYEE 145 (172)
T ss_pred -CCCEEEEcCCchhCCHHHHHHHH---hCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH---HHHHHh
Confidence 1233442 2 233333333443 457899999999999999821 1123344444443 444654
Q ss_pred CCcEEEEeC-CCCHHHHHHHHHHHHHh
Q 024390 224 QKKLLEFQV-GSAPVETWQGLLTALHL 249 (268)
Q Consensus 224 ~~~l~~Ida-~~s~eev~~~I~~~L~~ 249 (268)
-.. +.||+ +.+++++.+.|.+.+.+
T Consensus 146 ~Ad-~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 146 IAD-VTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred hCC-EEEECCCCCHHHHHHHHHHHHhh
Confidence 222 45665 47999999999988864
No 58
>PLN02199 shikimate kinase
Probab=99.43 E-value=9.1e-12 Score=111.99 Aligned_cols=160 Identities=11% Similarity=0.106 Sum_probs=102.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
.+..|+|+|++||||||+++.||+.+|+++||+|.++.+... |..+.+++. .|+....+...++|.+....
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~--- 172 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLSSR--- 172 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 456799999999999999999999999999999999988632 223444443 46666666666666654332
Q ss_pred cCccEEEEc--CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH--H-----HH--------HHHHHHHHHchHHH
Q 024390 156 RGEIGFILD--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG--S-----LK--------EKLEAYAELSKPLE 218 (268)
Q Consensus 156 ~~~~g~IlD--GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~--~-----~~--------~rl~~y~~~~~~l~ 218 (268)
...+|-. |.+........+. -.++|||++|.|++.+|+.. . +. +-.+...+......
T Consensus 173 --~~~VIStGGG~V~~~~n~~~L~----~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~ 246 (303)
T PLN02199 173 --YQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERG 246 (303)
T ss_pred --CCEEEECCCcccCCHHHHHHHh----CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHH
Confidence 1223322 2233333333333 26799999999999999842 0 10 00122333344455
Q ss_pred HHHHhCCcEEEE-----------eCCCCHHHHHHHHHHHHHhh
Q 024390 219 DYYQKQKKLLEF-----------QVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 219 ~~y~~~~~l~~I-----------da~~s~eev~~~I~~~L~~~ 250 (268)
.+|.+.+..+.+ ..+.+++++..+|.+.+...
T Consensus 247 plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~ 289 (303)
T PLN02199 247 EAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSF 289 (303)
T ss_pred HHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 667764433331 13688999999998888644
No 59
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.42 E-value=7.8e-12 Score=103.41 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC-CChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~-~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
|+|+|.|++||||||+|+.|++.+|+++++.+++++..... +.+.. ......... + .+...+...+.... ..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~---~--~~~~~~~~~i~~~~-~~ 73 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLI-EFLNYAEEN---P--EIDKKIDRRIHEIA-LK 73 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHH-HHHHHHhcC---c--HHHHHHHHHHHHHH-hc
Confidence 47999999999999999999999999999999988775321 11111 111111111 1 11222322222211 13
Q ss_pred ccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHHHHHHHHHchH-HHHHHHh-----C
Q 024390 158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKLEAYAELSKP-LEDYYQK-----Q 224 (268)
Q Consensus 158 ~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl~~y~~~~~~-l~~~y~~-----~ 224 (268)
+.++|++|.-... .+ ...+|++|++++|.+++.+|+.. ...+++..-.+.... ...+|.. .
T Consensus 74 ~~~~Vi~g~~~~~----~~--~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~ 147 (171)
T TIGR02173 74 EKNVVLESRLAGW----IV--REYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLS 147 (171)
T ss_pred CCCEEEEecccce----ee--cCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 4578999852211 01 12478999999999999999832 122222211111111 1233321 2
Q ss_pred CcEEEEeCC-CCHHHHHHHHHHHH
Q 024390 225 KKLLEFQVG-SAPVETWQGLLTAL 247 (268)
Q Consensus 225 ~~l~~Ida~-~s~eev~~~I~~~L 247 (268)
..-+.||.+ .++++ .+.|.+++
T Consensus 148 ~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 148 IYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred cccEEEECCCCCHHH-HHHHHHHh
Confidence 233678865 68999 99888765
No 60
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.41 E-value=2.6e-12 Score=117.31 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=101.6
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRL 150 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l 150 (268)
..-+..+..|+|+|+|||||||+++.|++++|+++++++..+.+... ..+.+.+. .|+....+...+.+.+.+
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G------~~i~ei~~~~G~~~fr~~e~~~l~~ll 200 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG------LSVSEIFALYGQEGYRRLERRALERLI 200 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC------CCHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 33456778899999999999999999999999999999987766532 12333322 344333444455555544
Q ss_pred HcCCccCccEEEEcCC--cCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH--------HHHHHHHHHHchHHHHH
Q 024390 151 EDGYYRGEIGFILDGL--PRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL--------KEKLEAYAELSKPLEDY 220 (268)
Q Consensus 151 ~~~~~~~~~g~IlDGf--Pr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~--------~~rl~~y~~~~~~l~~~ 220 (268)
... ...+|-.|. +..... +..+....++|||++|.+++.+|+..+- ....+.+++.......+
T Consensus 201 ~~~----~~~VI~~Ggg~v~~~~~---~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~ 273 (309)
T PRK08154 201 AEH----EEMVLATGGGIVSEPAT---FDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPL 273 (309)
T ss_pred hhC----CCEEEECCCchhCCHHH---HHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHH
Confidence 432 223333332 222222 2223334679999999999999984321 11123333444444556
Q ss_pred HHhCCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390 221 YQKQKKLLEFQVG-SAPVETWQGLLTALHLQ 250 (268)
Q Consensus 221 y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~ 250 (268)
|+..+ ++||++ .+++++.++|...+...
T Consensus 274 y~~ad--~~I~t~~~s~ee~~~~I~~~l~~~ 302 (309)
T PRK08154 274 YARAD--AVVDTSGLTVAQSLARLRELVRPA 302 (309)
T ss_pred HHhCC--EEEECCCCCHHHHHHHHHHHHHHH
Confidence 65322 356655 59999999999999654
No 61
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.41 E-value=3.7e-12 Score=107.48 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=91.5
Q ss_pred EEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH-HHHHHHHHHHHc---C---Cc
Q 024390 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-IIFGLLSKRLED---G---YY 155 (268)
Q Consensus 83 I~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~-~~~~ll~~~l~~---~---~~ 155 (268)
|.|++||||||+++.|++++.-..+. .+....+..++.|+.+++.+..+...+.. ...-...++... . .+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~---~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l 77 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK---VIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL 77 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE---EEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc---ccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999998544432 11122345678889999888844333322 111111122110 0 01
Q ss_pred cCccEEEEcCCcCC------------HHHHHHHH-hhc--CCCeEEEEecCHHHHHhhhhHHH-----HHHHHHHHHHch
Q 024390 156 RGEIGFILDGLPRS------------RIQAEILD-QLA--EIDLVVNFKCADNFIVTNRGGSL-----KEKLEAYAELSK 215 (268)
Q Consensus 156 ~~~~g~IlDGfPr~------------~~qa~~l~-~~~--~~d~vV~Ld~~~e~l~~Rl~~~~-----~~rl~~y~~~~~ 215 (268)
..+..+|.|.+..+ ......+. .+. .||++|+|+++++++.+|+..+- ...-..|.+...
T Consensus 78 ~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~ 157 (186)
T PF02223_consen 78 KRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVR 157 (186)
T ss_dssp HTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHH
T ss_pred cCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHH
Confidence 23567787854221 12222222 234 89999999999999999993321 111122222222
Q ss_pred -HHHHHHHhCCcEEEEeCCCCHHHHHHHH
Q 024390 216 -PLEDYYQKQKKLLEFQVGSAPVETWQGL 243 (268)
Q Consensus 216 -~l~~~y~~~~~l~~Ida~~s~eev~~~I 243 (268)
...+.++..+.++.||++.++++|.++|
T Consensus 158 ~~y~~l~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 158 EAYLELAKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHHHHcCCCCEEEEECCCCHHHHHhhC
Confidence 2223333356899999999999999886
No 62
>PRK04040 adenylate kinase; Provisional
Probab=99.41 E-value=1e-11 Score=105.61 Aligned_cols=159 Identities=12% Similarity=0.116 Sum_probs=92.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHhhcCCCCh--hHHHHHHHHhccCcccHHHHHHHHHHHHHcC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSS--LHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l--~~~~is~~dlir~~~~~~~~--~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (268)
+++|+|.|+|||||||+++.|++++ ++.+++.|+++++......- ....++.. ..........+..+++...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHh
Confidence 4689999999999999999999999 89999999998776432210 01111110 0000111222333444332
Q ss_pred CccCccEEEEcCCcC--CH------HHHHHHHhhcCCCeEEEEecCHHHHHhhhhH------------HHHHHHHHHHHH
Q 024390 154 YYRGEIGFILDGLPR--SR------IQAEILDQLAEIDLVVNFKCADNFIVTNRGG------------SLKEKLEAYAEL 213 (268)
Q Consensus 154 ~~~~~~g~IlDGfPr--~~------~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~------------~~~~rl~~y~~~ 213 (268)
..+..+|+||... +. .....+.. ..||.+|+|.++++++++|... .++.+.+.
T Consensus 78 --~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~-l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~---- 150 (188)
T PRK04040 78 --AGEGPVIVDTHATIKTPAGYLPGLPEWVLEE-LNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEM---- 150 (188)
T ss_pred --hcCCCEEEeeeeeeccCCCCcCCCCHHHHhh-cCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHH----
Confidence 2344588887321 00 12233333 4899999999999999888732 22333222
Q ss_pred chHHHHHHHh-CC-cE-EEEeCCCCHHHHHHHHHHHH
Q 024390 214 SKPLEDYYQK-QK-KL-LEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 214 ~~~l~~~y~~-~~-~l-~~Ida~~s~eev~~~I~~~L 247 (268)
......+|.. .+ .+ +.+|-+..+++.++++.++|
T Consensus 151 a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 151 NRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 1112223332 12 33 34444444999999998876
No 63
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.37 E-value=9.1e-12 Score=102.79 Aligned_cols=153 Identities=11% Similarity=0.102 Sum_probs=84.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCccc----HHH---HHHHHHHHHHcC
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS----EDI---IFGLLSKRLEDG 153 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip----~~~---~~~ll~~~l~~~ 153 (268)
|+|+|++||||||+++.|++.++..+++.+++...... . .+..|.... ++. +.+.+...+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI---------E-KMSAGIPLNDDDRWPWLQNLNDASTAAAAK- 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH---------H-HHHcCCCCChhhHHHHHHHHHHHHHHHHhc-
Confidence 57899999999999999999999999999886422100 0 001111111 111 11222222322
Q ss_pred CccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHH--HHHHHHHHchHHHHHHHhCCcEEEEe
Q 024390 154 YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKE--KLEAYAELSKPLEDYYQKQKKLLEFQ 231 (268)
Q Consensus 154 ~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~--rl~~y~~~~~~l~~~y~~~~~l~~Id 231 (268)
....+|-.++.+ ....+.+......-.+|+|++|.+++.+|+..+-.. ..+....+...+..--.....++.||
T Consensus 70 ---~~~~Vi~~t~~~-~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id 145 (163)
T TIGR01313 70 ---NKVGIITCSALK-RHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPLADETDVLRVD 145 (163)
T ss_pred ---CCCEEEEecccH-HHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCCCceEEEE
Confidence 223344445432 333344443332234799999999999999433210 00111111111110000112578999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 024390 232 VGSAPVETWQGLLTALH 248 (268)
Q Consensus 232 a~~s~eev~~~I~~~L~ 248 (268)
++++++++.+++.+.|-
T Consensus 146 ~~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 146 IDQPLEGVEEDCIAVVL 162 (163)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988763
No 64
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.36 E-value=1.8e-11 Score=101.05 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=91.7
Q ss_pred CCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccCccEEEEc-
Q 024390 87 PRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRGEIGFILD- 164 (268)
Q Consensus 87 pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~~~g~IlD- 164 (268)
|||||||+++.||+.+|++++|+|+++.+.. |..+.+++. .|+....+...+++.+.+.. ...+|--
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~------g~si~~i~~~~G~~~fr~~E~~~l~~l~~~-----~~~VIa~G 69 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT------GMSISEIFAEEGEEAFRELESEALRELLKE-----NNCVIACG 69 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH------TSHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSEEEEE-
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh------CCcHHHHHHcCChHHHHHHHHHHHHHHhcc-----CcEEEeCC
Confidence 7999999999999999999999999997763 455666554 45444455556666544433 2334433
Q ss_pred -CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH---------H--HHHHHHHHHchHHHHHHHhCCcEEEEeC
Q 024390 165 -GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL---------K--EKLEAYAELSKPLEDYYQKQKKLLEFQV 232 (268)
Q Consensus 165 -GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~---------~--~rl~~y~~~~~~l~~~y~~~~~l~~Ida 232 (268)
|.+......+.|. ....+|||+++.+++.+|+...- . .....+. . ....|..... +.++.
T Consensus 70 GG~~~~~~~~~~L~---~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~-~---R~~~Y~~~a~-~~v~~ 141 (158)
T PF01202_consen 70 GGIVLKEENRELLK---ENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF-E---REPLYEQAAD-IVVDT 141 (158)
T ss_dssp TTGGGSHHHHHHHH---HHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-H---HHHHHHHHSS-EEEET
T ss_pred CCCcCcHHHHHHHH---hCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-H---HHHHHHhcCe-EEEeC
Confidence 4666666666665 34579999999999999983211 1 1122222 3 3344544333 45676
Q ss_pred CCCH-HHHHHHHHHHHH
Q 024390 233 GSAP-VETWQGLLTALH 248 (268)
Q Consensus 233 ~~s~-eev~~~I~~~L~ 248 (268)
+..+ +++.++|.+.|+
T Consensus 142 ~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 142 DGSPPEEIAEEILEFLK 158 (158)
T ss_dssp SSCHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 6554 999999998874
No 65
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.36 E-value=1.6e-11 Score=105.40 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccH-----H-------------
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE-----D------------- 140 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~-----~------------- 140 (268)
++|.|+|++||||||+++.|++ +|+++|+.|++.++...++.+..+.+.+.+..+...++ .
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4799999999999999999997 89999999999999888888777777777654332221 0
Q ss_pred -----HHHHHH----HHHHHcCCccCc-cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh-------HHH
Q 024390 141 -----IIFGLL----SKRLEDGYYRGE-IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-------GSL 203 (268)
Q Consensus 141 -----~~~~ll----~~~l~~~~~~~~-~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-------~~~ 203 (268)
++...+ .+++... ...+ ..++++ .|.-.+. .+ ...+|.+|+++||.++.++|+. +..
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~-~~~~~~~vv~e-~plL~e~--g~--~~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~ 154 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEA-RAQGAKVAVYD-MPLLVEK--GL--DRKMDLVVVVDVDVEERVRRLVEKRGLDEDDA 154 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHH-HhcCCCEEEEE-eeceeEc--Cc--cccCCeEEEEECCHHHHHHHHHHcCCCCHHHH
Confidence 111111 1122111 0011 223333 3321110 00 1257999999999999999983 233
Q ss_pred HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
..|+.. +... .... .. ..+.|+.+.+++++.+++..++..
T Consensus 155 ~~ri~~---Q~~~-~~k~-~~-ad~vI~N~g~~e~l~~~v~~~~~~ 194 (200)
T PRK14734 155 RRRIAA---QIPD-DVRL-KA-ADIVVDNNGTREQLLAQVDGLIAE 194 (200)
T ss_pred HHHHHh---cCCH-HHHH-Hh-CCEEEECcCCHHHHHHHHHHHHHH
Confidence 444432 2221 1111 11 235678889999999999988753
No 66
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.32 E-value=7.1e-12 Score=107.36 Aligned_cols=163 Identities=10% Similarity=0.057 Sum_probs=97.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhH-HHHHHHHhccCcccHH----HH---------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLH-KQIANAVNRGEVVSED----II--------- 142 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g-~~i~~~l~~G~~ip~~----~~--------- 142 (268)
.++.|+|.|+|||||||+|+.|++++|+.++..+|++|+.+......+ ...++.+..|+.++++ ++
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999865322211 1122223333333221 11
Q ss_pred -----HHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEec-CHHHHHhhhhHHH--------HHHHH
Q 024390 143 -----FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKC-ADNFIVTNRGGSL--------KEKLE 208 (268)
Q Consensus 143 -----~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~-~~e~l~~Rl~~~~--------~~rl~ 208 (268)
..++...+ ..+..+|+||......+.+.... .. ..++++.+ +++.+.+|+..+. .+|+-
T Consensus 82 v~~~L~~va~~~l-----~~G~sVIvEgv~l~p~~~~~~~~-~~-v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~ 154 (197)
T PRK12339 82 IMPGINRVIRRAL-----LNGEDLVIESLYFHPPMIDENRT-NN-IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLA 154 (197)
T ss_pred HHHHHHHHHHHHH-----HcCCCEEEEecCcCHHHHHHHHh-cC-eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHH
Confidence 11122222 24677999997665554432211 22 35666665 5677778884432 23444
Q ss_pred HHHHHchHHHHHHHhC---CcEEEEeCCCCHHHHHHHHHHHH
Q 024390 209 AYAELSKPLEDYYQKQ---KKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 209 ~y~~~~~~l~~~y~~~---~~l~~Ida~~s~eev~~~I~~~L 247 (268)
.|-.++..+.+|.-+. ..+-.|+ +.+.++.++.+.+.+
T Consensus 155 ~~~~~ir~i~~~l~~~a~~~~i~~i~-~~~~~~~~~~~~~~~ 195 (197)
T PRK12339 155 EHLPEYRTIMDYSIADARGYNIKVID-TDNYREARNPLLDPI 195 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeec-CccHHHHHHHHHHHh
Confidence 4444555566665432 1244455 677888888887654
No 67
>PRK07261 topology modulation protein; Provisional
Probab=99.31 E-value=8.6e-12 Score=104.42 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
++|+|+|+|||||||+|+.|++.+|+++++.|++.... + ....+.+.....+...+.+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~------ 58 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---N-------------WQERDDDDMIADISNFLLK------ 58 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc---c-------------cccCCHHHHHHHHHHHHhC------
Confidence 57999999999999999999999999999998765321 0 0112334444555554432
Q ss_pred cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
..||+||.+....+...+. ..|.+|+|++|.++++.|+
T Consensus 59 ~~wIidg~~~~~~~~~~l~---~ad~vI~Ld~p~~~~~~R~ 96 (171)
T PRK07261 59 HDWIIDGNYSWCLYEERMQ---EADQIIFLNFSRFNCLYRA 96 (171)
T ss_pred CCEEEcCcchhhhHHHHHH---HCCEEEEEcCCHHHHHHHH
Confidence 2499999876544444443 5789999999999999998
No 68
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.30 E-value=1e-10 Score=101.67 Aligned_cols=166 Identities=12% Similarity=0.051 Sum_probs=86.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchh-HHHH-hhcCCCChhHHH------HHHHHhccC---cccHHHHHHHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVR-QDLSPRSSLHKQ------IANAVNRGE---VVSEDIIFGLLSK 148 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~-dlir-~~~~~~~~~g~~------i~~~l~~G~---~ip~~~~~~ll~~ 148 (268)
.|+|.|+.||||||+++.|+++++...+... .... ...+.+..+++. ++.+..+.. .........++..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 4899999999999999999999987544222 1100 011111222221 333333222 1122222122222
Q ss_pred HHHcC------CccCccEEEEcCCcCCHH--H-------------HH---HHHh-----hcCCCeEEEEecCHHHHHhhh
Q 024390 149 RLEDG------YYRGEIGFILDGLPRSRI--Q-------------AE---ILDQ-----LAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 149 ~l~~~------~~~~~~g~IlDGfPr~~~--q-------------a~---~l~~-----~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
+..+. ....+..+|+|.++-+.. | .+ .+.+ ...||++|+|++|++.+.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 22210 012356789998753321 1 11 1111 146999999999999999998
Q ss_pred hHHHH----HHHHHHHHHchHH-HHH----HHhCCcEEEEeCC--CCHHHHHHHHHH
Q 024390 200 GGSLK----EKLEAYAELSKPL-EDY----YQKQKKLLEFQVG--SAPVETWQGLLT 245 (268)
Q Consensus 200 ~~~~~----~rl~~y~~~~~~l-~~~----y~~~~~l~~Ida~--~s~eev~~~I~~ 245 (268)
..+-. ..-..|.+..... .++ |.+...++.+|++ .+++++..+|..
T Consensus 161 ~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 161 KKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred HHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence 32211 0111233222222 122 2334478899988 788888887653
No 69
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.27 E-value=2.8e-11 Score=97.16 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=70.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCCh----hHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS----LHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~----~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
.|+|+|+|||||||+++.|++.++..+|+.+++.........+ ... ..+. -.+.+...+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~l~~--- 69 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIE-AEER-------AYQILNAAIRKALRN--- 69 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHH-HHHH-------HHHHHHHHHHHHHHT---
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHH-HHHH-------HHHHHHHHHHHHHHc---
Confidence 4899999999999999999999999999998877665431111 000 0000 112334445555543
Q ss_pred cCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhh
Q 024390 156 RGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG 200 (268)
Q Consensus 156 ~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~ 200 (268)
+..+|+|+.-....+.+.+.+. .....+|+|+++.+++.+|+.
T Consensus 70 --g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~ 116 (143)
T PF13671_consen 70 --GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLA 116 (143)
T ss_dssp --T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHH
T ss_pred --CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHH
Confidence 4568888655554544444332 235579999999999999983
No 70
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.27 E-value=5.6e-11 Score=114.71 Aligned_cols=144 Identities=15% Similarity=0.187 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHH-hccCcccHHHHHHHHHHHHHcCC--c
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGY--Y 155 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l-~~G~~ip~~~~~~ll~~~l~~~~--~ 155 (268)
|+|+|+|+|||||||+++.|++.+|++++++|+++.+.. |..+.+++ ..|+....+...+.+++...... .
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~------g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vi 74 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE------GRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVV 74 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc------CCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEE
Confidence 579999999999999999999999999999999887752 22233333 23554455555565655433211 1
Q ss_pred cCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----H---HHHHHHHHHHchHHHHHHHhCCcEE
Q 024390 156 RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----L---KEKLEAYAELSKPLEDYYQKQKKLL 228 (268)
Q Consensus 156 ~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----~---~~rl~~y~~~~~~l~~~y~~~~~l~ 228 (268)
..+.|+|+| ..+.+.|.+ +.+|||+++.+++.+|+..+ . .+++.. ........|++ +.
T Consensus 75 s~Gggvv~~-----~~~r~~l~~----~~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~---L~~~R~~lY~~---~~ 139 (488)
T PRK13951 75 ATGGGVVID-----PENRELLKK----EKTLFLYAPPEVLMERVTTENRPLLREGKERIRE---IWERRKQFYTE---FR 139 (488)
T ss_pred ECCCccccC-----hHHHHHHhc----CeEEEEECCHHHHHHHhccCCCCCccccHHHHHH---HHHHHHHHHhc---cc
Confidence 134444444 233444443 45999999999999998321 0 122322 22223344543 24
Q ss_pred EEeCC-CCHHHHHHHH
Q 024390 229 EFQVG-SAPVETWQGL 243 (268)
Q Consensus 229 ~Ida~-~s~eev~~~I 243 (268)
.||++ .+++++.+++
T Consensus 140 ~IDt~~~s~~e~~~~i 155 (488)
T PRK13951 140 GIDTSKLNEWETTALV 155 (488)
T ss_pred EEECCCCCHHHHHHHH
Confidence 67764 5676766554
No 71
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.26 E-value=1.4e-10 Score=100.09 Aligned_cols=161 Identities=8% Similarity=0.065 Sum_probs=98.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc--------cC-cccHH-------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR--------GE-VVSED------- 140 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~--------G~-~ip~~------- 140 (268)
..+.|.|.|++||||||+++.|++ +|++.++.|.+.++...++......+...+.. |. .+...
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 346799999999999999999997 89999999999888766655443444433311 21 01111
Q ss_pred -----------HHHHHH----HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh------
Q 024390 141 -----------IIFGLL----SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR------ 199 (268)
Q Consensus 141 -----------~~~~ll----~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl------ 199 (268)
++...+ ...+.... ..+..+|+-+.|.-.+ . .+ ...+|.+|++++|.+++.+|+
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~-~~~~~vvv~e~pLL~e-~-~~--~~~~d~ii~V~a~~e~~~~Rl~~R~~~ 157 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAA-RRGKRILVKEAAILFE-S-GG--DAGLDFIVVVAADTELRLERAVQRGMG 157 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHH-hcCCCEEEEEeeeeee-c-Cc--hhcCCeEEEEECCHHHHHHHHHHcCCC
Confidence 111112 22222110 1222454444443211 0 01 135799999999999999998
Q ss_pred -hHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 200 -GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 200 -~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
++.+.+|++.+......+ + . .-+.|+.+.+++++.++|.+.+..
T Consensus 158 s~e~~~~Ri~~q~~~~~~~-~----~-ad~vI~N~g~~e~l~~~i~~~~~~ 202 (208)
T PRK14731 158 SREEIRRRIAAQWPQEKLI-E----R-ADYVIYNNGTLDELKAQTEQLYQV 202 (208)
T ss_pred CHHHHHHHHHHcCChHHHH-H----h-CCEEEECCCCHHHHHHHHHHHHHH
Confidence 345667776543332222 1 1 124567789999999999988764
No 72
>PLN02422 dephospho-CoA kinase
Probab=99.26 E-value=1.5e-10 Score=101.37 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh------ccCcccH-------------
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN------RGEVVSE------------- 139 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~------~G~~ip~------------- 139 (268)
+.|.|+|.+||||||+++.|+ ++|++++|+|++.++...++++....+.+.+. +|. ++.
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~-idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGE-VDREKLGQIVFSDPSK 79 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCc-CCHHHHHHHHhCCHHH
Confidence 369999999999999999999 58999999999999998877766666665542 232 221
Q ss_pred -----HHHHHHHHHHHH----cCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HH
Q 024390 140 -----DIIFGLLSKRLE----DGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SL 203 (268)
Q Consensus 140 -----~~~~~ll~~~l~----~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~ 203 (268)
+++-..+.+.+. +.......-+|+| .|.-.+ . .+ ...+|.+|+++||.++.++|+.. ..
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E-~-~~--~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea 154 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFE-T-KM--DKWTKPVVVVWVDPETQLERLMARDGLSEEQA 154 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhh-c-ch--hhhCCEEEEEECCHHHHHHHHHHcCCCCHHHH
Confidence 122222222221 1100112344555 343211 0 01 12579999999999999999832 33
Q ss_pred HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.+|+ ..+.. ... ...... +.|+.+.+.+++..++..+++.-
T Consensus 155 ~~Ri---~~Q~~-~ee-k~~~AD-~VI~N~gs~e~L~~qv~~ll~~l 195 (232)
T PLN02422 155 RNRI---NAQMP-LDW-KRSKAD-IVIDNSGSLEDLKQQFQKVLEKI 195 (232)
T ss_pred HHHH---HHcCC-hhH-HHhhCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence 4444 22221 111 111222 46777889999999999887653
No 73
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.26 E-value=4.4e-10 Score=93.88 Aligned_cols=163 Identities=16% Similarity=0.151 Sum_probs=108.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHH-----------HH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII-----------FG 144 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~-----------~~ 144 (268)
.++.+|++.|..+|||||+|..|.+.+.-.+ .-..++ ..-...+..|+.+..++.+...+|+..+ ..
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~-~~~~l~-~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGL-DPAELL-RFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHHhcc-ChHHhh-hcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 4788999999999999999999999873222 222222 2223457789999998888776776544 33
Q ss_pred HHHHHHHcCCccCccEEEEcCCcCCHH---HHHHHH---------hhcCCCeEEEEecCHHHHHhhh---hH-----HHH
Q 024390 145 LLSKRLEDGYYRGEIGFILDGLPRSRI---QAEILD---------QLAEIDLVVNFKCADNFIVTNR---GG-----SLK 204 (268)
Q Consensus 145 ll~~~l~~~~~~~~~g~IlDGfPr~~~---qa~~l~---------~~~~~d~vV~Ld~~~e~l~~Rl---~~-----~~~ 204 (268)
++++.+.+ +..+|+|-|..+-. -|+.+. .+..||+|+||+++++.+.+|- ++ .++
T Consensus 81 ~i~e~l~k-----g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~v~fq 155 (208)
T KOG3327|consen 81 LIKEKLAK-----GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYETVAFQ 155 (208)
T ss_pred HHHHHHhc-----CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHHHHHH
Confidence 45555543 56688887654321 122222 1358999999999999977765 11 233
Q ss_pred HHHHHHHHHchHHHHHHH-hCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 205 EKLEAYAELSKPLEDYYQ-KQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 205 ~rl~~y~~~~~~l~~~y~-~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
++...+.+... + +...++.+||+.+.|+|.++|..++..-.
T Consensus 156 ekv~~~~q~l~------r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~ 197 (208)
T KOG3327|consen 156 EKVLVFFQKLL------RKEDLNWHVVDASKSVEKVHQQVRSLVENVL 197 (208)
T ss_pred HHHHHHHHHHH------hccCCCeEEEecCccHHHHHHHHHHHHHHhc
Confidence 33333222211 2 23468999999999999999998887644
No 74
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.24 E-value=2.3e-10 Score=95.71 Aligned_cols=156 Identities=17% Similarity=0.067 Sum_probs=85.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHH----HHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI----IFGLLS 147 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~----~~~ll~ 147 (268)
++..|+|+|+|||||||+++.|+++++ ..+++. |-+++.+... |...+... ....+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~-d~~r~~~~~~-------------~~~~~~~~~~~~~~~~l~ 71 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG-DELREILGHY-------------GYDKQSRIEMALKRAKLA 71 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec-HHHHhhcCCC-------------CCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999885 455554 4455543211 00000110 111222
Q ss_pred HHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHH--HHHHHHchHHHHHHHhCC
Q 024390 148 KRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKL--EAYAELSKPLEDYYQKQK 225 (268)
Q Consensus 148 ~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl--~~y~~~~~~l~~~y~~~~ 225 (268)
+.+.. .+..+|+||......-.+.......+.++|+|++|.+++.+|....+.... ....+.......+|....
T Consensus 72 ~~l~~----~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~A 147 (176)
T PRK05541 72 KFLAD----QGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPKA 147 (176)
T ss_pred HHHHh----CCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCCC
Confidence 22321 356788887532111111122234556899999999999999843211110 011111111122333322
Q ss_pred cEEEEeCC--CCHHHHHHHHHHHHHhhc
Q 024390 226 KLLEFQVG--SAPVETWQGLLTALHLQH 251 (268)
Q Consensus 226 ~l~~Ida~--~s~eev~~~I~~~L~~~~ 251 (268)
-+.||.+ .++++++++|.+.+..+.
T Consensus 148 -d~vI~~~~~~~~~~~v~~i~~~l~~~~ 174 (176)
T PRK05541 148 -DLVIDNSCRTSLDEKVDLILNKLKLRL 174 (176)
T ss_pred -CEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 2344544 589999999988886553
No 75
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.3e-10 Score=93.83 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=97.7
Q ss_pred EcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHH---HHHHHHcCCccCccE
Q 024390 84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL---LSKRLEDGYYRGEIG 160 (268)
Q Consensus 84 ~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~l---l~~~l~~~~~~~~~g 160 (268)
+|..||||||+++.||+++|+.+|+-|++--.+. -+-|..|..+.|+-.... |.+++.+.. ..+..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aN----------i~KM~~GiPL~DdDR~pWL~~l~~~~~~~~-~~~~~ 69 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPAN----------IEKMSAGIPLNDDDRWPWLEALGDAAASLA-QKNKH 69 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHH----------HHHHhCCCCCCcchhhHHHHHHHHHHHHhh-cCCCc
Confidence 5999999999999999999999999988664431 134678888877655433 344444321 23344
Q ss_pred EEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHH--HHHHHHHchHHHHHHHhCCcEEEEeCCCCHHH
Q 024390 161 FILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEK--LEAYAELSKPLEDYYQKQKKLLEFQVGSAPVE 238 (268)
Q Consensus 161 ~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~r--l~~y~~~~~~l~~~y~~~~~l~~Ida~~s~ee 238 (268)
.|+-.........+.|....+--.+|||+.+.+.+.+|+..+--.- -.....|...++.-- ....++.||.++++++
T Consensus 70 ~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~-~de~vi~idi~~~~e~ 148 (161)
T COG3265 70 VVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEEPG-ADEDVLTIDIDQPPEE 148 (161)
T ss_pred eEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCC-CCCCEEEeeCCCCHHH
Confidence 5555544444444555443322459999999999999993220000 011122222222100 1125889999999999
Q ss_pred HHHHHHHHHHhh
Q 024390 239 TWQGLLTALHLQ 250 (268)
Q Consensus 239 v~~~I~~~L~~~ 250 (268)
+.+++..+|...
T Consensus 149 vv~~~~~~l~~~ 160 (161)
T COG3265 149 VVAQALAWLKEG 160 (161)
T ss_pred HHHHHHHHHhcc
Confidence 999999998753
No 76
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.24 E-value=9.8e-11 Score=99.18 Aligned_cols=152 Identities=15% Similarity=0.170 Sum_probs=93.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh------ccCcccH--------------
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN------RGEVVSE-------------- 139 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~------~G~~ip~-------------- 139 (268)
+|.|+|.+||||||+++.|++..|++++++|++.++...++.+....+.+.+. +|. +..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHH
Confidence 48999999999999999999998899999999999988877766666655442 222 111
Q ss_pred ----HH----HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh-------HHHH
Q 024390 140 ----DI----IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-------GSLK 204 (268)
Q Consensus 140 ----~~----~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-------~~~~ 204 (268)
++ +...+.+.+.+. .....+|+-+.|.-... .+. ..+|.++++++|.+++++|+. +.+.
T Consensus 80 ~~le~ilhP~i~~~i~~~i~~~--~~~~~~vvi~~pll~e~--~~~--~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~ 153 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLAQF--QSKLAYVLLDVPLLFEN--KLR--SLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQ 153 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHHHh--hcCCCEEEEEchHhhhC--CcH--HhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence 11 112222333322 11213444445432221 111 257899999999999999983 3344
Q ss_pred HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHH
Q 024390 205 EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLL 244 (268)
Q Consensus 205 ~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~ 244 (268)
+|+.. +. +..+. ... .-..|+.+.+++++..++.
T Consensus 154 ~r~~~---q~-~~~~~-~~~-ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 154 KRLAS---QM-DIEER-LAR-ADDVIDNSATLADLVKQLE 187 (188)
T ss_pred HHHHh---cC-CHHHH-HHh-CCEEEECCCCHHHHHHHHh
Confidence 44433 22 11111 111 1245677889999998875
No 77
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.23 E-value=1.8e-10 Score=96.41 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhcCCCChhHHHHHHHH-hcc--CcccHHH---HHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAV-NRG--EVVSEDI---IFGLLSKR 149 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~~~~~~~g~~i~~~l-~~G--~~ip~~~---~~~ll~~~ 149 (268)
+..|+|.|+|||||||+++.|++.++.. |++.|++... +....... .+.+ .++ ...+++. ....+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA-LPLKCQDA---EGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh-cChhhccc---ccccccCccCCcccchHHHHHHHHHHHH
Confidence 4579999999999999999999998654 5567665543 22110000 0000 011 1112211 22222222
Q ss_pred HHcCCccCccEEEEcC-CcCCHHHHHHHHhhcC-CCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHHh-CCc
Q 024390 150 LEDGYYRGEIGFILDG-LPRSRIQAEILDQLAE-IDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQK-QKK 226 (268)
Q Consensus 150 l~~~~~~~~~g~IlDG-fPr~~~qa~~l~~~~~-~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~-~~~ 226 (268)
+... ...+..+|+|. ++......+.+..+.. +-..|+++||.+++.+|...+-.. ....... ..+.+.. ...
T Consensus 78 ~~~~-l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~-~~~~~~~---~~~~~~~~~~~ 152 (175)
T cd00227 78 VAAM-ARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDR-VPGQARK---QARVVHAGVEY 152 (175)
T ss_pred HHHH-HhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCc-cchHHHH---HHHHhcCCCcc
Confidence 2211 12467789986 4422222233333333 346999999999999999543211 1111110 0111221 234
Q ss_pred EEEEeCC-CCHHHHHHHHHHHH
Q 024390 227 LLEFQVG-SAPVETWQGLLTAL 247 (268)
Q Consensus 227 l~~Ida~-~s~eev~~~I~~~L 247 (268)
.+.||++ .+++|+.++|.+.|
T Consensus 153 dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 153 DLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred eEEEECCCCCHHHHHHHHHHhc
Confidence 6788976 58999999998765
No 78
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.23 E-value=4e-10 Score=95.31 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=88.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC-----ChhHHHHHHHHhccCcccHHHHH--------H
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR-----SSLHKQIANAVNRGEVVSEDIIF--------G 144 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~-----~~~g~~i~~~l~~G~~ip~~~~~--------~ 144 (268)
+..++|+||+||||||+++.|+..++...+..+..+....... ...++.....++.|... ..+.. .
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFA-LSWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchh-hHHHHhCCccCCcH
Confidence 4579999999999999999999988765444443332211100 01122222333333221 11100 0
Q ss_pred HHHHHHHcCCccCccEEEEcCCcCCHHHHHHHH-hhcCCCeEEEEecCHHHHHhhhhH-------HHHHHHHHHHHHchH
Q 024390 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILD-QLAEIDLVVNFKCADNFIVTNRGG-------SLKEKLEAYAELSKP 216 (268)
Q Consensus 145 ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~-~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl~~y~~~~~~ 216 (268)
-+...+. .+..+|++|. ......+. .+..+..+|+|++|.+++.+|+.. .+.+|++.+
T Consensus 81 ~~~~~l~-----~g~~VI~~G~---~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~------ 146 (186)
T PRK10078 81 EIDLWLH-----AGFDVLVNGS---RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARA------ 146 (186)
T ss_pred HHHHHHh-----CCCEEEEeCh---HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHh------
Confidence 1233333 2456888876 11122222 234556789999999999999932 334444221
Q ss_pred HHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 217 LEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 217 l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.+|. ....++||.+.+++++.++|.++|...
T Consensus 147 --~~~~-~ad~~vi~~~~s~ee~~~~i~~~l~~~ 177 (186)
T PRK10078 147 --ARYQ-PQDCHTLNNDGSLRQSVDTLLTLLHLS 177 (186)
T ss_pred --hhhc-cCCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence 1232 234567777889999999999998643
No 79
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.23 E-value=8.5e-11 Score=95.53 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=64.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCccE
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIG 160 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~g 160 (268)
|+|+|+|||||||+++.|++.+|+.+++.++++...... ....... ..|.........+++.. +.. ..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~---~~~~~~~~~~e~~~~~~-~~~-----~~~ 70 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFA---EEGEEGFRELEREVLLL-LLT-----KEN 70 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHH---HHCHHHHHHHHHHHHHH-Hhc-----cCC
Confidence 899999999999999999999999999999888776432 2221111 11221111112222222 221 224
Q ss_pred EEEc-C--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh
Q 024390 161 FILD-G--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG 200 (268)
Q Consensus 161 ~IlD-G--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~ 200 (268)
+|++ | +...... ...+.....+|||++|.+++.+|+.
T Consensus 71 ~vi~~g~~~i~~~~~---~~~~~~~~~~i~l~~~~e~~~~R~~ 110 (154)
T cd00464 71 AVIATGGGAVLREEN---RRLLLENGIVVWLDASPEELLERLA 110 (154)
T ss_pred cEEECCCCccCcHHH---HHHHHcCCeEEEEeCCHHHHHHHhc
Confidence 4444 2 2222222 2223456789999999999999983
No 80
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.22 E-value=1.2e-10 Score=98.04 Aligned_cols=158 Identities=11% Similarity=0.110 Sum_probs=96.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccH-------HHHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE-------DIIFGLLSKRL 150 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~-------~~~~~ll~~~l 150 (268)
+..++|+|++||||||+++.|+..++..+++.+++.... .++. +..|....+ ..+.......+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDK-MSQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHH-HhcCCCCCcccchHHHHHHHHHHHHHH
Confidence 457899999999999999999999998888877652210 0111 111221111 11122222222
Q ss_pred HcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHH--HHHHHHHHHchHHHHHHHhCCcEE
Q 024390 151 EDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELSKPLEDYYQKQKKLL 228 (268)
Q Consensus 151 ~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~~~~l~ 228 (268)
.. ...|+|+..+- ...+.+.+.+...+-.+|+|++|.+++.+|+..+-. ...+.+..+...++..-.....++
T Consensus 73 ~~----~~~g~iv~s~~-~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~~~~e~~~~ 147 (176)
T PRK09825 73 KK----NETGFIVCSSL-KKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCADEHDIA 147 (176)
T ss_pred hc----CCCEEEEEEec-CHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCCCCCcCCeE
Confidence 21 25678776553 333444555555566799999999999999944321 133444444432222111123589
Q ss_pred EEeCCCCHHHHHHHHHHHHHhh
Q 024390 229 EFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 229 ~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.||++.+++++..++...+..+
T Consensus 148 ~~d~~~~~~~~~~~~~~~~~~~ 169 (176)
T PRK09825 148 RIDVNHDIENVTEQCRQAVQAF 169 (176)
T ss_pred EEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 81
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.21 E-value=3e-10 Score=100.36 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=86.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (268)
.|+|+|+|||||||+|+.|++.++ +.+++. |.+++.... ... .++....+....++...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~---~~~-------~~e~~~~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPV---WKE-------KYEEFIRDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHH---hhH-------HhHHHHHHHHHHHHHHHHhC--
Confidence 389999999999999999999873 344544 555554321 000 01111122333445555443
Q ss_pred ccCccEEEEcCCcCCHHHHHHHH----hhcCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHHh-------
Q 024390 155 YRGEIGFILDGLPRSRIQAEILD----QLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQK------- 223 (268)
Q Consensus 155 ~~~~~g~IlDGfPr~~~qa~~l~----~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~------- 223 (268)
+..+|+|+......+...+. ....+.++|+|++|.+.+.+|...+-+. . -.+....+...|+.
T Consensus 68 ---~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~-~--~~~~i~~l~~r~e~p~~~~~w 141 (249)
T TIGR03574 68 ---KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK-I--PNEVIKDMYEKFDEPGTKYSW 141 (249)
T ss_pred ---CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC-C--CHHHHHHHHHhhCCCCCCCCc
Confidence 44689998654333322222 2234568999999999999997322110 0 00111112222221
Q ss_pred CCcEEEEeCCC--CHHHHHHHHHHHHHh
Q 024390 224 QKKLLEFQVGS--APVETWQGLLTALHL 249 (268)
Q Consensus 224 ~~~l~~Ida~~--s~eev~~~I~~~L~~ 249 (268)
....+.||++. +++++++.|...+..
T Consensus 142 d~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 142 DLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred cCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 12567888765 678999999987753
No 82
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.20 E-value=4.3e-10 Score=99.29 Aligned_cols=159 Identities=13% Similarity=0.155 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh------ccCcccHH------------
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN------RGEVVSED------------ 140 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~------~G~~ip~~------------ 140 (268)
++|.|.|.+||||||+++.|++++|++.||.|.+.++...++.+....+.+.+. +|. ++..
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~-idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGE-LNRAELGKIIFSDAQA 80 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCc-CCHHHHHHHHhCCHHH
Confidence 579999999999999999999999999999999999988887776666665441 222 2211
Q ss_pred ------HHHHHHH----HHHHc-------CCc--cCccEEEEcCCcCCHHHHHHHHh-h--cCCCeEEEEecCHHHHHhh
Q 024390 141 ------IIFGLLS----KRLED-------GYY--RGEIGFILDGLPRSRIQAEILDQ-L--AEIDLVVNFKCADNFIVTN 198 (268)
Q Consensus 141 ------~~~~ll~----~~l~~-------~~~--~~~~g~IlDGfPr~~~qa~~l~~-~--~~~d~vV~Ld~~~e~l~~R 198 (268)
++-..+. +++.+ ... ....-+|+| .|.- ++. . ..+|.+|+++||.++.++|
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vPLL------~E~~~~~~~~D~iv~V~a~~e~ri~R 153 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-APTL------FETKTFTYFVSASVVVSCSEERQIER 153 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-echh------hccCchhhcCCeEEEEECCHHHHHHH
Confidence 1111111 12210 000 012345666 3321 221 1 2469999999999999999
Q ss_pred hh-------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCC--CCHHHHHHHHHHHHHhhc
Q 024390 199 RG-------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVG--SAPVETWQGLLTALHLQH 251 (268)
Q Consensus 199 l~-------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~--~s~eev~~~I~~~L~~~~ 251 (268)
+. +..++|+.. +... .+ ....... .|+.+ .+++++.++|.+.+....
T Consensus 154 L~~R~g~s~eea~~Ri~~---Q~~~-~e-k~~~aD~-VI~N~~~g~~~~L~~~v~~~~~~~~ 209 (244)
T PTZ00451 154 LRKRNGFSKEEALQRIGS---QMPL-EE-KRRLADY-IIENDSADDLDELRGSVCDCVAWMS 209 (244)
T ss_pred HHHcCCCCHHHHHHHHHh---CCCH-HH-HHHhCCE-EEECCCCCCHHHHHHHHHHHHHHHH
Confidence 83 344555533 2221 11 2222233 45556 899999999999886543
No 83
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.19 E-value=2.1e-09 Score=92.19 Aligned_cols=164 Identities=18% Similarity=0.170 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC----CCCh------hHHHHH----------HHHhccCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS----PRSS------LHKQIA----------NAVNRGEVV 137 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~----~~~~------~g~~i~----------~~l~~G~~i 137 (268)
.++|.|-||.||||||+|+.||++||+.|+++|-++|...- .+.+ +.+.+. ..+-+|+.+
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv 83 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV 83 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence 37899999999999999999999999999999999987531 1111 011111 011123333
Q ss_pred cHHHH-----------------HHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh
Q 024390 138 SEDII-----------------FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG 200 (268)
Q Consensus 138 p~~~~-----------------~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~ 200 (268)
.+.+. .+.+.++.... ...+.|+|+||-=-... -+...++-|||++++|+..+|--
T Consensus 84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~-a~~~~~~V~dGRDiGTv------V~PdA~lKiFLtAS~e~RA~RR~ 156 (222)
T COG0283 84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAF-AKNGPGIVADGRDIGTV------VFPDAELKIFLTASPEERAERRY 156 (222)
T ss_pred hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHH-HhcCCCEEEecCCCcce------ECCCCCeEEEEeCCHHHHHHHHH
Confidence 22111 11111111111 11236688887300000 01356789999999999988873
Q ss_pred HHHHHHH--HHHHHHchHH--HHHHHh---------CCcEEEEeC-CCCHHHHHHHHHHHHH
Q 024390 201 GSLKEKL--EAYAELSKPL--EDYYQK---------QKKLLEFQV-GSAPVETWQGLLTALH 248 (268)
Q Consensus 201 ~~~~~rl--~~y~~~~~~l--~~~y~~---------~~~l~~Ida-~~s~eev~~~I~~~L~ 248 (268)
..+..+- ..|++....+ .++.+. ..--+.||+ +.+++||+++|...++
T Consensus 157 ~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 157 KQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred HHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence 3332221 1233333222 222221 123467776 5899999999999987
No 84
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.18 E-value=2.5e-11 Score=94.90 Aligned_cols=106 Identities=25% Similarity=0.241 Sum_probs=59.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC-ccCc
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY-YRGE 158 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~-~~~~ 158 (268)
+|+|.|+|||||||+|+.|++++|+++++++++++...... ...+..-......+.+.+.+.... ....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIE----------RDDDEREYIDADIDLLDDILEQLQNKPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCH----------GCTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccc----------cCcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence 58999999999999999999999999999999543321100 001110001111222222222110 0246
Q ss_pred cEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
..||+||.-. .. ..+ .....+.+|+++++.+++.+|.
T Consensus 71 ~~~ii~g~~~-~~--~~~-~~~~~~~~i~l~~~~~~~~~~~ 107 (121)
T PF13207_consen 71 DNWIIDGSYE-SE--MEI-RLPEFDHVIYLDAPDEECRERR 107 (121)
T ss_dssp -EEEEECCSC-HC--CHS-CCHHGGCEEEEEEEEHHHHHHH
T ss_pred CeEEEeCCCc-cc--hhh-hhhcCCEEEEEECCCHHHHHHH
Confidence 7899999311 10 011 1223467999999998544443
No 85
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.18 E-value=1.4e-10 Score=99.81 Aligned_cols=165 Identities=8% Similarity=0.022 Sum_probs=91.3
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHh-CC--CccchhHHHHhhcCCCCh----hHHHHHHHHhccCcccHH-------
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL-EV--PRISMSSIVRQDLSPRSS----LHKQIANAVNRGEVVSED------- 140 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l-~~--~~is~~dlir~~~~~~~~----~g~~i~~~l~~G~~ip~~------- 140 (268)
|.++..|+|+||+||||||+++.|.+.. .+ +...+...-|.....+.. -.......+..|..+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 4688899999999999999999998652 12 111110000110011110 112233344444433210
Q ss_pred -HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecC--HHHHHhhhh-------HHHHHHHHHH
Q 024390 141 -IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA--DNFIVTNRG-------GSLKEKLEAY 210 (268)
Q Consensus 141 -~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~--~e~l~~Rl~-------~~~~~rl~~y 210 (268)
+-...+...+.+ +..+|+|.-+ ..+..+.+. .||.++++.+| .+++.+|+. +.+.+|+..+
T Consensus 90 Gt~~~~i~~~~~~-----g~~vi~~~~~---~g~~~l~~~-~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~ 160 (206)
T PRK14738 90 GVPKAPVRQALAS-----GRDVIVKVDV---QGAASIKRL-VPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATA 160 (206)
T ss_pred cCCHHHHHHHHHc-----CCcEEEEcCH---HHHHHHHHh-CCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 011233334432 4557777543 233444443 47887777765 557889883 2445555544
Q ss_pred HHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhccc
Q 024390 211 AELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHIN 253 (268)
Q Consensus 211 ~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~~~ 253 (268)
....... ....++.||++.++++++++|.++|......
T Consensus 161 ~~e~~~~-----~~~~~~iId~~~~~e~v~~~i~~~l~~~~~~ 198 (206)
T PRK14738 161 PLELEQL-----PEFDYVVVNPEDRLDEAVAQIMAIISAEKSR 198 (206)
T ss_pred HHHHhcc-----cCCCEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence 4332211 1124778999999999999999999876443
No 86
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.17 E-value=1.5e-10 Score=97.86 Aligned_cols=158 Identities=11% Similarity=0.048 Sum_probs=98.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh----CCCccchhHHHHhhcCCCChh----HHHHHHHHhccCcccHH--------H
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL----EVPRISMSSIVRQDLSPRSSL----HKQIANAVNRGEVVSED--------I 141 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l----~~~~is~~dlir~~~~~~~~~----g~~i~~~l~~G~~ip~~--------~ 141 (268)
++.|+|+||+||||+|+++.|.+.+ ...+..+..-.|.....+.+. .+.+.+.++.|+.++.. +
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 4569999999999999999999885 334444433333332223222 26677777777765532 2
Q ss_pred HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEe-cCHHHHHhhh-------hHHHHHHHHHHHHH
Q 024390 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFK-CADNFIVTNR-------GGSLKEKLEAYAEL 213 (268)
Q Consensus 142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld-~~~e~l~~Rl-------~~~~~~rl~~y~~~ 213 (268)
-...+.+.+. .++.+|+|+.|....|+... ...-++||+. .+.+++.+|+ .+.+++|+....+.
T Consensus 82 ~~~~i~~~~~-----~~~~~ild~~~~~~~~l~~~---~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~ 153 (184)
T smart00072 82 SKETIRQVAE-----QGKHCLLDIDPQGVKQLRKA---QLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKE 153 (184)
T ss_pred CHHHHHHHHH-----cCCeEEEEECHHHHHHHHHh---CCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 2334555554 36789999988776665442 2223799998 5556788888 24567777654333
Q ss_pred chHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 214 ~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.. .|...+ ..|. +.+.++..+++.++|...
T Consensus 154 ~~----~~~~fd--~~I~-n~~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 154 AQ----EYHLFD--YVIV-NDDLEDAYEELKEILEAE 183 (184)
T ss_pred Hh----hhccCC--EEEE-CcCHHHHHHHHHHHHHhc
Confidence 21 222111 3344 337999999999998753
No 87
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.16 E-value=4.8e-10 Score=105.69 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc-----CcccH--------------
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-----EVVSE-------------- 139 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G-----~~ip~-------------- 139 (268)
++|.|+|++||||||+++.|++ +|+++||+|.+.++...++......+.+.+..+ +.+..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999997 899999999999998877665544555444221 11111
Q ss_pred ----HHHHHHHHHHHHcCC-ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHHH
Q 024390 140 ----DIIFGLLSKRLEDGY-YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKL 207 (268)
Q Consensus 140 ----~~~~~ll~~~l~~~~-~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl 207 (268)
.++-..+..++.+.. ...+..+|+.+.|.-.+. .+ ...+|.+|++++|.++.++|+.. ....+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~~--~~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~r- 155 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--GM--APLFHLVVVVDADVEVRVRRLVEQRGMAEADARAR- 155 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--Cc--hhhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH-
Confidence 111222222222110 012345666666642220 01 12568999999999999999833 11222
Q ss_pred HHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhccc
Q 024390 208 EAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHIN 253 (268)
Q Consensus 208 ~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~~~ 253 (268)
+..+.. .+...+.. -+.|+.+.+++++..+|.+.+....+.
T Consensus 156 --i~~Q~~--~e~k~~~A-D~vIdN~~s~e~l~~~v~~~l~~~~~~ 196 (395)
T PRK03333 156 --IAAQAS--DEQRRAVA-DVWLDNSGTPDELVEAVRALWADRLLP 196 (395)
T ss_pred --HHhcCC--hHHHHHhC-CEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence 222211 11111122 245777889999999999888765433
No 88
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.16 E-value=3.3e-10 Score=92.12 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=67.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCccc----HHHHHHHHHHHHHcCCc
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS----EDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip----~~~~~~ll~~~l~~~~~ 155 (268)
.|+|.|+|||||||+|+.|++.++..+++.+++..... ...+..|...+ +.....+........ .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 69 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKL-A 69 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHH-H
Confidence 37899999999999999999999999999877654311 01111122111 111111111111110 0
Q ss_pred cCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhhhHH
Q 024390 156 RGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNRGGS 202 (268)
Q Consensus 156 ~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl~~~ 202 (268)
..+.++|+|.......+.+.+..+. ..-.+|+|+++.+++.+|+..+
T Consensus 70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (150)
T cd02021 70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR 118 (150)
T ss_pred hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence 1355788885444444555555542 3456999999999999999443
No 89
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.16 E-value=8.4e-10 Score=94.74 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=97.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCc-----cc--------------
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS-------------- 138 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~-----ip-------------- 138 (268)
++.|.|.|.|||||||+++.+++ +|++.|++|+++|+...++.+....+.+.+....+ +.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 57899999999999999999999 99999999999999888776666665554432111 00
Q ss_pred ----HHHHHHHHHHHHHcCCc-cCccEEEEcCCcCCHHHHHHHHhh---cCCCeEEEEecCHHHHHhhhhHH-------H
Q 024390 139 ----EDIIFGLLSKRLEDGYY-RGEIGFILDGLPRSRIQAEILDQL---AEIDLVVNFKCADNFIVTNRGGS-------L 203 (268)
Q Consensus 139 ----~~~~~~ll~~~l~~~~~-~~~~g~IlDGfPr~~~qa~~l~~~---~~~d~vV~Ld~~~e~l~~Rl~~~-------~ 203 (268)
+.++-.++...+. ... ....++++-..| .|.+. ..+|.||.++||+++.++|+..+ .
T Consensus 81 ~~~Le~i~hPli~~~~~-~~~~~~~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~ 152 (201)
T COG0237 81 RLKLEKILHPLIRAEIK-VVIDGARSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDA 152 (201)
T ss_pred HHHHHHhhhHHHHHHHH-HHHHHhhCCceEEEch-------HHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHH
Confidence 1122222223221 000 011223333333 23332 13789999999999999998432 2
Q ss_pred HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 204 KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 204 ~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
..|+. .+.. ..+-+...+ +.++++.++++..+++...+....
T Consensus 153 ~~~~~---~Q~~-~~ek~~~ad--~vi~n~~~i~~l~~~i~~~~~~~~ 194 (201)
T COG0237 153 EARLA---SQRD-LEEKLALAD--VVIDNDGSIENLLEQIEKLLKELL 194 (201)
T ss_pred HHHHH---hcCC-HHHHHhhcC--ChhhcCCCHHHHHHHHHHHHHHHH
Confidence 22221 1222 222222222 356888999999999998887543
No 90
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.15 E-value=2.1e-09 Score=90.00 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCc-cch--hHHHHhhcCCCChh----HHHHHHHHhccCcc--cHH-----HHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR-ISM--SSIVRQDLSPRSSL----HKQIANAVNRGEVV--SED-----IIFG 144 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~-is~--~dlir~~~~~~~~~----g~~i~~~l~~G~~i--p~~-----~~~~ 144 (268)
..++|+|++||||||+++.|+..++... +.. ...-+.....+... ..........+... ... -...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 4689999999999999999999875421 110 00001111111111 11222222233221 000 0011
Q ss_pred HHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHHHHHHHHHchHH
Q 024390 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKLEAYAELSKPL 217 (268)
Q Consensus 145 ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl~~y~~~~~~l 217 (268)
.+...+. .+..+|+||... ....+.+......+|+|+++.+++.+|+.. .+.+|+..+.
T Consensus 82 ~i~~~~~-----~g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~------ 147 (179)
T TIGR02322 82 EIDQWLE-----AGDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVLAQRLAARGRESREEIEERLARSA------ 147 (179)
T ss_pred HHHHHHh-----cCCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHHh------
Confidence 1222332 345688888621 222333333345799999999999999932 2344443221
Q ss_pred HHHHH-hCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 218 EDYYQ-KQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 218 ~~~y~-~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
.|. ....++.++++.+++++.++|.+.+..
T Consensus 148 --~~~~~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 148 --RFAAAPADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred --hcccccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 121 223456678788999999999998863
No 91
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.14 E-value=5.9e-10 Score=92.61 Aligned_cols=151 Identities=10% Similarity=0.065 Sum_probs=85.6
Q ss_pred EcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH-------HHHHHHHHHHHcCCcc
Q 024390 84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-------IIFGLLSKRLEDGYYR 156 (268)
Q Consensus 84 ~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~-------~~~~ll~~~l~~~~~~ 156 (268)
+|++||||||+++.|++.+|..+++.+.+..... +. .+..|....++ .+......... .
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~ 66 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IE-KMASGEPLNDDDRKPWLQALNDAAFAMQR----T 66 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hc-cccCCCCCChhhHHHHHHHHHHHHHHHHH----c
Confidence 5999999999999999999999998865421110 00 00111111110 11111111111 1
Q ss_pred CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHH--HHHHHHHHHchHHHHHHHhCCcEEEEeCCC
Q 024390 157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELSKPLEDYYQKQKKLLEFQVGS 234 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~ 234 (268)
.+..+|+-.+ ....+.+.+.+...+-.+|+|+|+++++.+|+..+-. ...+.+..+...++..-.....++.||++.
T Consensus 67 ~~~~viv~s~-~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~~ 145 (163)
T PRK11545 67 NKVSLIVCSA-LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQ 145 (163)
T ss_pred CCceEEEEec-chHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCCC
Confidence 2444555333 3333444455444455799999999999999954321 123334444322211101112478899999
Q ss_pred CHHHHHHHHHHHHHh
Q 024390 235 APVETWQGLLTALHL 249 (268)
Q Consensus 235 s~eev~~~I~~~L~~ 249 (268)
+++++..++...+..
T Consensus 146 ~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 146 PLEGVVASTIEVIKK 160 (163)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998854
No 92
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=6.5e-10 Score=90.53 Aligned_cols=155 Identities=13% Similarity=0.120 Sum_probs=101.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHH---HHHcC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSK---RLEDG 153 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~---~l~~~ 153 (268)
.+-.|+++|+.||||||+++.|++++++.+++.||+-..+ =.+-|.+|..+.|+-....|.+ .+...
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~----------NveKM~~GipLnD~DR~pWL~~i~~~~~~~ 80 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPA----------NVEKMTQGIPLNDDDRWPWLKKIAVELRKA 80 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHH----------HHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence 3447999999999999999999999999999999876443 1345677877766544333321 11111
Q ss_pred CccCccEEEEcCCcCCHHHHHHHHhhc-------CC---CeEEEEecCHHHHHhhhhH---------HHHHHHHHHHHHc
Q 024390 154 YYRGEIGFILDGLPRSRIQAEILDQLA-------EI---DLVVNFKCADNFIVTNRGG---------SLKEKLEAYAELS 214 (268)
Q Consensus 154 ~~~~~~g~IlDGfPr~~~qa~~l~~~~-------~~---d~vV~Ld~~~e~l~~Rl~~---------~~~~rl~~y~~~~ 214 (268)
...+.++|+-.........+.+.+.. .+ -.+|+|.++.|++.+|+.. .++.+|+..+--.
T Consensus 81 -l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf~~LE~p~ 159 (191)
T KOG3354|consen 81 -LASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLESQFATLEAPD 159 (191)
T ss_pred -hhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHHHHHHhccCCC
Confidence 12478899977654444555555421 12 2599999999999999922 2233332221110
Q ss_pred hHHHHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390 215 KPLEDYYQKQKKLLEFQVG-SAPVETWQGLLTALHL 249 (268)
Q Consensus 215 ~~l~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~ 249 (268)
.+...++.|++. .++|++...|.+.+..
T Consensus 160 -------~~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 160 -------ADEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred -------CCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 012257888876 8999999999887754
No 93
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.12 E-value=9.4e-10 Score=94.18 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=95.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh------ccCcccH---------------
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN------RGEVVSE--------------- 139 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~------~G~~ip~--------------- 139 (268)
|.|.|++||||||+++.|++ +|+.+++.|++.++...++.+..+.+.+.+. +|. +..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~-idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGK-PNRKKISEIVFNDEEKLK 79 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCc-cCHHHHHHHHhCCHHHHH
Confidence 78999999999999999976 6999999999999987777766666665442 222 111
Q ss_pred ---HHHHHHHHHHHHcCC-ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh-------HHHHHHHH
Q 024390 140 ---DIIFGLLSKRLEDGY-YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-------GSLKEKLE 208 (268)
Q Consensus 140 ---~~~~~ll~~~l~~~~-~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-------~~~~~rl~ 208 (268)
+++..++.+.+.+.. ......+++-..|.-.+. . + ...+|.+|++++|.++.++|+. +....|+.
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~-~-~--~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~ 155 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFET-D-A--YTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIA 155 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEc-C-c--hhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 122222322221100 001223444344542210 0 0 1257999999999999999983 34445543
Q ss_pred HHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 209 AYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 209 ~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
. +. +..+. ..... +.|+.+.+++++..+|.+.+.
T Consensus 156 ~---Q~-~~~~k-~~~aD-~vI~N~~~~~~l~~~v~~l~~ 189 (196)
T PRK14732 156 S---QL-PITEK-LKRAD-YIVRNDGNREGLKEECKILYS 189 (196)
T ss_pred H---cC-CHHHH-HHhCC-EEEECCCCHHHHHHHHHHHHH
Confidence 3 22 22222 22222 346668899999999998764
No 94
>PRK06547 hypothetical protein; Provisional
Probab=99.12 E-value=2.4e-10 Score=95.85 Aligned_cols=142 Identities=10% Similarity=0.018 Sum_probs=80.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHH-HHhccCcccHHHHHHHHHHHHHcC-
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIAN-AVNRGEVVSEDIIFGLLSKRLEDG- 153 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~-~l~~G~~ip~~~~~~ll~~~l~~~- 153 (268)
.+.++|+|.|++||||||+++.|++.++++.++++++...... -....+.+.+ .+..|+...-. ...........
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~--yd~~~~~~~~~~ 89 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWR--WDWANNRPGDWV 89 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceec--CCCCCCCCCCcE
Confidence 4677899999999999999999999999999999988754211 0111122222 23333221000 00000000000
Q ss_pred CccCccEEEEcCCcCCHHH-HHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHH
Q 024390 154 YYRGEIGFILDGLPRSRIQ-AEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQ 222 (268)
Q Consensus 154 ~~~~~~g~IlDGfPr~~~q-a~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~ 222 (268)
.......+|++|..-...+ .+.+++ ....++||+++|.+++.+|+..+-.. +..|...+.+.++.|-
T Consensus 90 ~l~~~~vVIvEG~~al~~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~~-~~~~~~~w~~~e~~~~ 157 (172)
T PRK06547 90 SVEPGRRLIIEGVGSLTAANVALASL-LGEVLTVWLDGPEALRKERALARDPD-YAPHWEMWAAQEERHF 157 (172)
T ss_pred EeCCCCeEEEEehhhccHHHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCch-hhHHHHHHHHHHHHHH
Confidence 0112456888986322111 111211 12228999999999999999543222 5566666666666663
No 95
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.12 E-value=9.6e-10 Score=106.23 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=38.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~ 116 (268)
.++++|.|.|++||||||+|+.|++++|+.+++.|+++|..
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 47789999999999999999999999999999999999874
No 96
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.11 E-value=1.4e-09 Score=93.63 Aligned_cols=163 Identities=12% Similarity=0.109 Sum_probs=95.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-----ccCcccH------------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-----RGEVVSE------------ 139 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-----~G~~ip~------------ 139 (268)
.++.|.|.|++||||||+++.|++.+|+++++.|.+.++...+ .+..+.+.+.+. +|. ++.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~vF~d~~ 82 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAIITESKE 82 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHHhCCHH
Confidence 3478999999999999999999999999999999999888654 334344443331 221 211
Q ss_pred ------HHHHHHHHHHHHcCCc-cCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHH
Q 024390 140 ------DIIFGLLSKRLEDGYY-RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKE 205 (268)
Q Consensus 140 ------~~~~~ll~~~l~~~~~-~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~ 205 (268)
+++-..+.+++.+... ....-+|+| .|.-.+. . +.....+|.+|++.||.++.++|+.+ ....
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~e-ipLL~E~-~-~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ 159 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVD-IPLLGPY-N-FRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVA 159 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEE-echhhhc-c-CchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence 1222222222221100 112345555 3332110 0 00012478999999999999999832 3333
Q ss_pred HHHHHHHHchHHHHHHHhCCcEEEEeCCC-CHHHHHHHHHHHHHhh
Q 024390 206 KLEAYAELSKPLEDYYQKQKKLLEFQVGS-APVETWQGLLTALHLQ 250 (268)
Q Consensus 206 rl~~y~~~~~~l~~~y~~~~~l~~Ida~~-s~eev~~~I~~~L~~~ 250 (268)
|+. .|.. ..+.-...+ ++|+.+. +.+++.++|...+...
T Consensus 160 ri~---~Q~~-~eek~~~aD--~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 160 FIN---LQIS-DKEREKIAD--FVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred HHH---hCCC-HHHHHHhCC--EEEECcCCCHHHHHHHHHHHHHHH
Confidence 332 2222 112111122 4567677 9999999999988764
No 97
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.11 E-value=1e-09 Score=92.37 Aligned_cols=114 Identities=21% Similarity=0.268 Sum_probs=74.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-----ccc----------------
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-----VVS---------------- 138 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-----~ip---------------- 138 (268)
+|.|.|+|||||||+++.|++ +|++++++|++.++...++......+.+.+..+. .+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 388999999999999999999 9999999999999988877777777776653211 111
Q ss_pred --HHHHHHHHHHHHHcCC--ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390 139 --EDIIFGLLSKRLEDGY--YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 139 --~~~~~~ll~~~l~~~~--~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
++++..++..++.+.. .....-+|+| .|.-.+. .+. ..+|.+|+++||+++.++|+
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive-~plL~e~--~~~--~~~D~vv~V~a~~~~ri~Rl 139 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLD-IPLLFET--GLE--KLVDRVIVVDAPPEIQIERL 139 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEE-ehHhhcC--CcH--HhCCeEEEEECCHHHHHHHH
Confidence 1222233333332210 0111234455 3332110 011 25799999999999999998
No 98
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.09 E-value=3e-10 Score=91.40 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=62.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCcc
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~ 159 (268)
+|+|.|+|||||||+|+.|++.+|+++++.+.+-.+.. ......... ...+...+.+.+.+. ....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~------~~~~~~~~~------~~~i~~~l~~~~~~~--~~~~ 66 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV------GKLASEVAA------IPEVRKALDERQREL--AKKP 66 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH------HHHHHHhcc------cHhHHHHHHHHHHHH--hhCC
Confidence 48999999999999999999999999999984322211 111110000 001112222222221 1245
Q ss_pred EEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH
Q 024390 160 GFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG 201 (268)
Q Consensus 160 g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~ 201 (268)
+||+||...... + ....+++|+|++|++..++|+.+
T Consensus 67 ~~Vidg~~~~~~----~--~~~~~~~i~l~~~~~~r~~R~~~ 102 (147)
T cd02020 67 GIVLEGRDIGTV----V--FPDADLKIFLTASPEVRAKRRAK 102 (147)
T ss_pred CEEEEeeeeeeE----E--cCCCCEEEEEECCHHHHHHHHHH
Confidence 799998532110 0 13478999999999999999844
No 99
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.08 E-value=4e-09 Score=89.33 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=76.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC-----
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY----- 154 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~----- 154 (268)
.|+|.|++||||||+++.|++++|+.++.-..- .. ....++ ++..+.+...........++..+.....
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~-~~--~~~~~~---l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE-PD--VEGNPF---LEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccccccc-cc--CCCCCC---HHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999887654322100 00 001111 2222221100000011111112221110
Q ss_pred ccCccEEEEcCCcCCHH--------H-------HH----HHHh----hcCCCeEEEEecCHHHHHhhhhHHHHH----HH
Q 024390 155 YRGEIGFILDGLPRSRI--------Q-------AE----ILDQ----LAEIDLVVNFKCADNFIVTNRGGSLKE----KL 207 (268)
Q Consensus 155 ~~~~~g~IlDGfPr~~~--------q-------a~----~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~~~----rl 207 (268)
...+..+|+|.+|.+.. + .+ .++. ...||++|+|+++++++.+|+.++-.. .-
T Consensus 75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~~~ 154 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPEEQGIP 154 (193)
T ss_pred cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCcHhhhcCC
Confidence 12466789998775421 0 11 1111 136999999999999999998432211 11
Q ss_pred HHHHHHchH-HHHHHHh----CCcEEEEeCCC-CH
Q 024390 208 EAYAELSKP-LEDYYQK----QKKLLEFQVGS-AP 236 (268)
Q Consensus 208 ~~y~~~~~~-l~~~y~~----~~~l~~Ida~~-s~ 236 (268)
..|.+.... ...++.. ...++.||++. ++
T Consensus 155 ~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~~~~ 189 (193)
T cd01673 155 LDYLEDLHEAYEKWFLPQMYEKAPVLIIDANEADI 189 (193)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCEEEEECCcccc
Confidence 123332222 2333332 24688899876 44
No 100
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.07 E-value=2e-09 Score=89.95 Aligned_cols=159 Identities=18% Similarity=0.111 Sum_probs=84.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHH--HHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII--FGLLSKR 149 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~--~~ll~~~ 149 (268)
++..|+|+|+|||||||+++.|+..+. +.+++.+.+ ++....+......-+ +... ...+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r----------~~~~~~~~~~a~~ 71 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDR----------DTNIRRIGFVANL 71 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhH----------HHHHHHHHHHHHH
Confidence 567899999999999999999999873 556776543 333221110000000 0000 1112222
Q ss_pred HHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHHH--HHHHHchHHHHHHHhC-Cc
Q 024390 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLE--AYAELSKPLEDYYQKQ-KK 226 (268)
Q Consensus 150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~--~y~~~~~~l~~~y~~~-~~ 226 (268)
+.. .+..+++|+.-......+.+......-.+|+|+||.+++.+|....+-.+.. ...........+|... ..
T Consensus 72 ~~~----~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad 147 (175)
T PRK00889 72 LTR----HGVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPE 147 (175)
T ss_pred HHh----CCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCc
Confidence 221 2455677765222333344444433446999999999999996321111110 0000000112333321 22
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 227 LLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 227 l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+...+.+.+++++.++|.+.|...
T Consensus 148 ~~i~~~~~~~~~~~~~i~~~l~~~ 171 (175)
T PRK00889 148 VECRTDLESLEESVDKVLQKLEEL 171 (175)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHc
Confidence 333334678999999999999753
No 101
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.06 E-value=9.7e-09 Score=89.74 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=35.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~ 115 (268)
.++|.|.|++||||||+|+.|++++|+.+++.|+++|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 47899999999999999999999999999999998876
No 102
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.05 E-value=2.2e-09 Score=105.42 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC------CccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHH--HH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV------PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL--LS 147 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~------~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~l--l~ 147 (268)
+++..|+|+|+|||||||+|+.|+++++. .+++. |.+|+.+..+......-+ +.....+ +.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~-D~vr~~l~ge~~f~~~er----------~~~~~~l~~~a 458 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG-DVVRKHLSSELGFSKEDR----------DLNILRIGFVA 458 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC-cHHHHhccCCCCCCHHHH----------HHHHHHHHHHH
Confidence 45678999999999999999999999985 67776 455665432211100000 0011111 11
Q ss_pred HHHHcCCccCccEEEEcC-CcCCHHHHHHHHhhcC-CC-eEEEEecCHHHHHhhhhHHH--HHHHHHHHHHchHHHHHHH
Q 024390 148 KRLEDGYYRGEIGFILDG-LPRSRIQAEILDQLAE-ID-LVVNFKCADNFIVTNRGGSL--KEKLEAYAELSKPLEDYYQ 222 (268)
Q Consensus 148 ~~l~~~~~~~~~g~IlDG-fPr~~~qa~~l~~~~~-~d-~vV~Ld~~~e~l~~Rl~~~~--~~rl~~y~~~~~~l~~~y~ 222 (268)
..+. ..+.++|+|. +|......+..+.+.. .. ++|||++|.+++.+|....+ +.+....++.......||.
T Consensus 459 ~~v~----~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~ 534 (568)
T PRK05537 459 SEIT----KNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEP 534 (568)
T ss_pred HHHH----hCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccC
Confidence 1121 2467788884 4543222222221211 23 58999999999999973211 1111112222222234553
Q ss_pred hCCcEEEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390 223 KQKKLLEFQVG-SAPVETWQGLLTALHLQH 251 (268)
Q Consensus 223 ~~~~l~~Ida~-~s~eev~~~I~~~L~~~~ 251 (268)
...--+.||++ .+++++.++|.+.|...+
T Consensus 535 p~~Adl~IDt~~~s~~eiv~~Il~~L~~~g 564 (568)
T PRK05537 535 PANPELVIDTTNVTPDECAHKILLYLEEKG 564 (568)
T ss_pred CCCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 22223567765 689999999999987654
No 103
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.05 E-value=2.7e-09 Score=90.17 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-----cccH--------------
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-----VVSE-------------- 139 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-----~ip~-------------- 139 (268)
|.|.|.|..||||||+++.|++ +|++++|+|.+.++...++.+....+.+.+...- .+..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5799999999999999999999 9999999999999998888887777776654221 1221
Q ss_pred ----HHHHHHH----HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH
Q 024390 140 ----DIIFGLL----SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG 201 (268)
Q Consensus 140 ----~~~~~ll----~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~ 201 (268)
+++..++ .+++... ....-+++| .|.-.+. .+ ...+|.+|++.||.++.++|+.+
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~--~~~~~~v~e-~pLL~E~--~~--~~~~D~vi~V~a~~e~ri~Rl~~ 142 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRN--KSEKVVVVE-IPLLFES--GL--EKLCDEVIVVYAPEEIRIKRLME 142 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--HSTSEEEEE--TTTTTT--TG--GGGSSEEEEEE--HHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhc--cCCCEEEEE-cchhhhh--hH--hhhhceEEEEECCHHHHHHHHHh
Confidence 1222222 2223222 122455665 3431110 01 13589999999999999999943
No 104
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.04 E-value=3.6e-09 Score=91.99 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=36.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~ 116 (268)
.+.|.|.||+||||||+++.|++++++.+++.|++.|..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 468999999999999999999999999999999988664
No 105
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.00 E-value=2.6e-08 Score=85.06 Aligned_cols=166 Identities=10% Similarity=0.071 Sum_probs=91.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC---CCh----hHHHHHHHHhccCcccH-----HH---
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP---RSS----LHKQIANAVNRGEVVSE-----DI--- 141 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~---~~~----~g~~i~~~l~~G~~ip~-----~~--- 141 (268)
.+..|+|+|++||||||+++.|+..++..++.....-|+.... +.+ ..+.....+..|..+.. +.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 5678999999999999999999998763232222221211000 000 12333334444432211 10
Q ss_pred HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHh-hcCCCeEEEEecCHHHHHhhh-------hHHHHHHHHHHHHH
Q 024390 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIVTNR-------GGSLKEKLEAYAEL 213 (268)
Q Consensus 142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~-~~~~d~vV~Ld~~~e~l~~Rl-------~~~~~~rl~~y~~~ 213 (268)
....+...+.. +.-+|+|.-+.. ...+.+ +..+-.++++.++.+++.+|+ ++.+++|+..+...
T Consensus 84 ~~~~i~~~l~~-----g~~vi~dl~~~g---~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~ 155 (205)
T PRK00300 84 PRSPVEEALAA-----GKDVLLEIDWQG---ARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREE 155 (205)
T ss_pred cHHHHHHHHHc-----CCeEEEeCCHHH---HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 11223333332 455777764322 223322 233333555567788999998 34677788777654
Q ss_pred chHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhcccccCC
Q 024390 214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAYS 257 (268)
Q Consensus 214 ~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~~~~~~~ 257 (268)
.. ++...+.++ + +.+++++.+++..++....+.++..
T Consensus 156 ~~----~~~~~d~vi-~--n~~~e~~~~~l~~il~~~~~~~~~~ 192 (205)
T PRK00300 156 IA----HASEYDYVI-V--NDDLDTALEELKAIIRAERLRRSRQ 192 (205)
T ss_pred HH----hHHhCCEEE-E--CCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 32 233334333 3 4489999999999999875544433
No 106
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.98 E-value=7.5e-09 Score=103.62 Aligned_cols=165 Identities=18% Similarity=0.104 Sum_probs=94.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh----cCCCChhH--HHHHHHHh-------------ccCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD----LSPRSSLH--KQIANAVN-------------RGEVV 137 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~----~~~~~~~g--~~i~~~l~-------------~G~~i 137 (268)
+.++|.|.||+||||||+++.||+++|+.|+++|.++|.. +..+..+. ..+.+.+. +|+.+
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDV 520 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence 4568999999999999999999999999999999999886 12221111 11112111 12111
Q ss_pred cHH-----------------HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh
Q 024390 138 SED-----------------IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG 200 (268)
Q Consensus 138 p~~-----------------~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~ 200 (268)
..+ .+.+.+.++..+. ....++|+||- ..-. .-+.+.++-|||+++.++..+|.-
T Consensus 521 ~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~--~~~~~~v~eGR--digt----vv~p~a~~kifl~a~~~~Ra~Rr~ 592 (661)
T PRK11860 521 TDAIRTEAAGMGASRVSALPAVRAALLALQRSF--RRLPGLVADGR--DMGT----VIFPDAALKVFLTASAEARAERRY 592 (661)
T ss_pred hhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHH--hhCCCEEEECC--CCcc----EECCCCCeEEEEECChhHHHHHHH
Confidence 111 1122222222221 12346888873 1000 001357899999999999998874
Q ss_pred HHHHHHH--HHHHHHchHH--HHHHHh---------CCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390 201 GSLKEKL--EAYAELSKPL--EDYYQK---------QKKLLEFQVG-SAPVETWQGLLTALHL 249 (268)
Q Consensus 201 ~~~~~rl--~~y~~~~~~l--~~~y~~---------~~~l~~Ida~-~s~eev~~~I~~~L~~ 249 (268)
++++++- ..|++....+ .++-+. ..--+.||.+ .+++|+++.|.+.+..
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 593 KQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 4332211 0122221111 111111 1234678865 6999999999999864
No 107
>PRK12338 hypothetical protein; Provisional
Probab=98.97 E-value=2.6e-08 Score=90.94 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=98.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC--Chh----HHHHHH---HHhccCcc-c--------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR--SSL----HKQIAN---AVNRGEVV-S-------- 138 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~--~~~----g~~i~~---~l~~G~~i-p-------- 138 (268)
++..|+|.|+|||||||+|+.||+++|+.++..+|.+|+....- .++ .....+ .+...+.. +
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~g 82 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAG 82 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHH
Confidence 45789999999999999999999999999997788888865421 100 111001 11111111 1
Q ss_pred ----HHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhc-CCCeEEEEecCHHHHHhhhhHHHH-----HHHH
Q 024390 139 ----EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIVTNRGGSLK-----EKLE 208 (268)
Q Consensus 139 ----~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~-~~d~vV~Ld~~~e~l~~Rl~~~~~-----~rl~ 208 (268)
.+.+...+..-+... ...+..+|++|..-...-........ .+-.++.|..+++...+|+..+.+ .+..
T Consensus 83 f~~q~~~V~~~i~~vi~r~-~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~l 161 (319)
T PRK12338 83 FEEHASFVIPAIEKVIERA-VTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQL 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhhh
Confidence 122222222223221 12467899999754433222111001 123466666888899999854221 1222
Q ss_pred HHHHHchHHHHHHHhC---CcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 209 AYAELSKPLEDYYQKQ---KKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 209 ~y~~~~~~l~~~y~~~---~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
.|-+.+..+-+|+.+. ..+..+ .+.+.++..+.|.+.|....
T Consensus 162 ~~f~~Ir~Iq~~l~~~A~e~~VpvI-~N~did~Tv~~ile~I~e~s 206 (319)
T PRK12338 162 EYFRENRIIHDHLVEQAREHNVPVI-KNDDIDCTVKKMLSYIREVC 206 (319)
T ss_pred hChHHHHHHHHHHHHhHhhCCCcee-CCCcHHHHHHHHHHHHHhhe
Confidence 3333444455655432 233344 47899999999999998664
No 108
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.97 E-value=8.2e-09 Score=104.18 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~ 116 (268)
++|.|.|||||||||+|+.||+++|+.++++|.++|..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 47999999999999999999999999999999988874
No 109
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.94 E-value=1.9e-08 Score=86.49 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=86.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~---~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~ 152 (268)
.++.+|.|.|++||||||+++.|++.++ +.+++.++........ +...............+.+.+.+.|......
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL--SFEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC--CHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 4678999999999999999999999983 3456777655432100 0000000000011111222222333221111
Q ss_pred CC-------------------ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH--------HHH
Q 024390 153 GY-------------------YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS--------LKE 205 (268)
Q Consensus 153 ~~-------------------~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~--------~~~ 205 (268)
.. .....-+|+||..--.. ..+. ..+|.+|++++|.++.++|...+ ..+
T Consensus 82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~--~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~ 157 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR--DLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLES 157 (209)
T ss_pred CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh--hhhceeEEEeCChhHHHHHHHhhcchhcCCCHHH
Confidence 00 01233577888643110 1111 24689999999999999986221 112
Q ss_pred HHHHHHHHchHHHHHHHh---CCcEEEEeCC----CCHHHHHHHHHHHHH
Q 024390 206 KLEAYAELSKPLEDYYQK---QKKLLEFQVG----SAPVETWQGLLTALH 248 (268)
Q Consensus 206 rl~~y~~~~~~l~~~y~~---~~~l~~Ida~----~s~eev~~~I~~~L~ 248 (268)
-...|.++..+....|.+ ...-+.|+.+ ++.+++.++|...+.
T Consensus 158 ~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 158 VINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred HHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhh
Confidence 223444444442222211 1223445433 368888888887654
No 110
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.90 E-value=3.5e-08 Score=83.13 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=84.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHhhcCCCChhH-HHHHHHHhccCcccHHHHHHH--HH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLH-KQIANAVNRGEVVSEDIIFGL--LS 147 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~~~~~~~~~g-~~i~~~l~~G~~ip~~~~~~l--l~ 147 (268)
.++..|+|+|+|||||||+++.|+..+ | ..+++.+ -+++.+..+.... ... ......+ +.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~~~~~~~~~-----------~~~~~~~~~~~ 83 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKDLGFSEEDR-----------KENIRRIGEVA 83 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccccCCCHHHH-----------HHHHHHHHHHH
Confidence 356899999999999999999999987 2 3455543 4444322111000 000 0011111 11
Q ss_pred HHHHcCCccCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhhhHHHHH--HHHHHHHHchHHHHHHHh
Q 024390 148 KRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNRGGSLKE--KLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 148 ~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl~~~~~~--rl~~y~~~~~~l~~~y~~ 223 (268)
..+. ..+..+|+|..-....+.+.+.... .+-++|+|++|.+++.+|....+-. +...+.. ...+...|..
T Consensus 84 ~~~~----~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~-l~~~~~~y~~ 158 (184)
T TIGR00455 84 KLFV----RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKG-FTGIDSPYEA 158 (184)
T ss_pred HHHH----cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccC-cccccCCCCC
Confidence 1121 2467788887544455555555442 2346899999999999995211100 0000000 1112222332
Q ss_pred -CCcEEEEeCC-CCHHHHHHHHHHHH
Q 024390 224 -QKKLLEFQVG-SAPVETWQGLLTAL 247 (268)
Q Consensus 224 -~~~l~~Ida~-~s~eev~~~I~~~L 247 (268)
..--+.||.+ .+++++.++|.+.|
T Consensus 159 p~~adl~Idt~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 159 PENPEVVLDTDQNDREECVGQIIEKL 184 (184)
T ss_pred CCCCcEEEECCCCCHHHHHHHHHHhC
Confidence 2334677754 68999999887653
No 111
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.89 E-value=1.4e-08 Score=103.67 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=38.7
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~ 116 (268)
|..+++|.|.|||||||||+|+.||+++|+.++++|.++|..
T Consensus 31 ~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 31 PMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 455578999999999999999999999999999999999886
No 112
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.88 E-value=4.7e-08 Score=83.52 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=83.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH--HH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SK 148 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll--~~ 148 (268)
.++..|+|+|++||||||+++.|+..+ +..+++.+++ +..+.....+ .. . -..+....+. ..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~-~~~~~~~~~~-------~~-~--~~~~~~~~l~~~a~ 90 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV-RHGLCSDLGF-------SD-A--DRKENIRRVGEVAK 90 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH-HhhhhhcCCc-------Cc-c--cHHHHHHHHHHHHH
Confidence 467789999999999999999999986 2455555443 3322110000 00 0 0011122221 11
Q ss_pred HHHcCCccCccEEEEcCCcC-CHHHHHHHHhh-cCCCe-EEEEecCHHHHHhhhhHHHHH--HHHHHHHHchHHHHHHHh
Q 024390 149 RLEDGYYRGEIGFILDGLPR-SRIQAEILDQL-AEIDL-VVNFKCADNFIVTNRGGSLKE--KLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 149 ~l~~~~~~~~~g~IlDGfPr-~~~qa~~l~~~-~~~d~-vV~Ld~~~e~l~~Rl~~~~~~--rl~~y~~~~~~l~~~y~~ 223 (268)
.+.. .+ ..|+..|.. ...+.+.+... ...++ +|||++|.+++.+|....+.. +...+.. .......|..
T Consensus 91 ~~~~----~G-~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~-l~~~r~~Y~~ 164 (198)
T PRK03846 91 LMVD----AG-LVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRN-FTGIDSVYEA 164 (198)
T ss_pred HHhh----CC-CEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccC-cccccccCCC
Confidence 1111 12 344455544 23444445443 23345 799999999999994211111 0000000 1111222552
Q ss_pred CC-cEEEEeC-CCCHHHHHHHHHHHHHhhc
Q 024390 224 QK-KLLEFQV-GSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 224 ~~-~l~~Ida-~~s~eev~~~I~~~L~~~~ 251 (268)
.. --+.||+ +.+++++.++|.+.+....
T Consensus 165 p~~ad~~Idt~~~~~~~vv~~Il~~l~~~~ 194 (198)
T PRK03846 165 PESPEIHLDTGEQLVTNLVEQLLDYLRQRD 194 (198)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 11 2246774 6799999999999997643
No 113
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.87 E-value=1.1e-07 Score=80.75 Aligned_cols=159 Identities=15% Similarity=0.220 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccH-----HHH----------H
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE-----DII----------F 143 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~-----~~~----------~ 143 (268)
..|-+.|..||||||+++.+. .+|++.||.|.+.|+...++++-+..+.+.+...-+.++ +.+ .
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 467899999999999999998 899999999999999999999999888887754322221 110 0
Q ss_pred HH--------HH----HHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHH
Q 024390 144 GL--------LS----KRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLK 204 (268)
Q Consensus 144 ~l--------l~----~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~ 204 (268)
++ +. +++......+..-+|+| .|.-.+- .+.+ .+..+|...|+.+.-++|+.+ ..+
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~~--~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe 155 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLLK--ICHKTVVVTCDEELQLERLVERDELSEEDAE 155 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHHh--heeeEEEEEECcHHHHHHHHHhccccHHHHH
Confidence 11 11 11111111233444555 5543221 1222 344578888999999999833 333
Q ss_pred HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 205 EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 205 ~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
.|+.. | -|+.+.-+. .-+++|.+.+++++.++|...+..
T Consensus 156 ~Rl~s---Q-mp~~~k~~~--a~~Vi~Nng~~~~l~~qv~~v~~~ 194 (225)
T KOG3220|consen 156 NRLQS---Q-MPLEKKCEL--ADVVIDNNGSLEDLYEQVEKVLAL 194 (225)
T ss_pred HHHHh---c-CCHHHHHHh--hheeecCCCChHHHHHHHHHHHHH
Confidence 44422 1 122222222 135678899999999999988764
No 114
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.86 E-value=2e-08 Score=83.97 Aligned_cols=156 Identities=9% Similarity=0.025 Sum_probs=85.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC---Ch----hHHHHHHHHhccCcccHH--------HH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR---SS----LHKQIANAVNRGEVVSED--------II 142 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~---~~----~g~~i~~~l~~G~~ip~~--------~~ 142 (268)
+..|+|+||+||||||+++.|++.++..++......|+..... .. ....+...+..|+.+... ..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 4579999999999999999999987655555443333322110 00 012233334444432210 11
Q ss_pred HHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHH-HhhcCCCeEEEEecCHHHHHhhh-------hHHHHHHHHHHHHHc
Q 024390 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEIL-DQLAEIDLVVNFKCADNFIVTNR-------GGSLKEKLEAYAELS 214 (268)
Q Consensus 143 ~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l-~~~~~~d~vV~Ld~~~e~l~~Rl-------~~~~~~rl~~y~~~~ 214 (268)
...+...+.+ +..+|+|.- ...+..+ +.+..+..++++..+.+.+.+|+ ++.+++|+..+..+.
T Consensus 81 ~~~i~~~~~~-----g~~vi~d~~---~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~ 152 (180)
T TIGR03263 81 KSPVEEALAA-----GKDVLLEID---VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEI 152 (180)
T ss_pred HHHHHHHHHC-----CCeEEEECC---HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 2334444433 456888853 2223333 33333344555577788999988 235667776554332
Q ss_pred hHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 215 KPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 215 ~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
. +.+.-.. .|.. .+.+++.+++.+.+.
T Consensus 153 ~-----~~~~~d~-~i~n-~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 153 A-----HADEFDY-VIVN-DDLEKAVEELKSIIL 179 (180)
T ss_pred h-----ccccCcE-EEEC-CCHHHHHHHHHHHHh
Confidence 1 1111122 2332 478999999998774
No 115
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.83 E-value=3.8e-08 Score=95.61 Aligned_cols=98 Identities=9% Similarity=-0.026 Sum_probs=70.2
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (268)
+.++..|+++|+|||||||+|+.+++..|+.+|+.|++- . .+.....+...|..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~~-- 419 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALDQ-- 419 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHhC--
Confidence 356778999999999999999999999999999997651 1 01122334445543
Q ss_pred ccCccEEEEcCCcCCHHHHHHHHh----hcCCCeEEEEecCHHHHHhhhhH
Q 024390 155 YRGEIGFILDGLPRSRIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGG 201 (268)
Q Consensus 155 ~~~~~g~IlDGfPr~~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~ 201 (268)
+..+|+|..-.+..+.+.+.+ ..-+-.+|+|++|.+++.+|+..
T Consensus 420 ---G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~ 467 (526)
T TIGR01663 420 ---GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAF 467 (526)
T ss_pred ---CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHh
Confidence 567999986555555444433 23344689999999999999843
No 116
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.81 E-value=6.4e-07 Score=79.54 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccc---hhHHHHhhcCC----------CChhHHHHHHHHhc--cCcccHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS---MSSIVRQDLSP----------RSSLHKQIANAVNR--GEVVSED 140 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is---~~dlir~~~~~----------~~~~g~~i~~~l~~--G~~ip~~ 140 (268)
.+.+.|++.|+.|||||++|+.||+++|+.|+- +|+++-..... ..---..+..+..+ |+ ....
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~d-lsa~ 147 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGD-LSAA 147 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCcc-HHHH
Confidence 366789999999999999999999999997754 55544222110 00000011111111 11 1111
Q ss_pred HHHHHH-------HHHHHcCCccCccEEEEcCCcCCH-HHHHHHH----------------------hhcCCCeEEEEec
Q 024390 141 IIFGLL-------SKRLEDGYYRGEIGFILDGLPRSR-IQAEILD----------------------QLAEIDLVVNFKC 190 (268)
Q Consensus 141 ~~~~ll-------~~~l~~~~~~~~~g~IlDGfPr~~-~qa~~l~----------------------~~~~~d~vV~Ld~ 190 (268)
+-..+. .++++.. ...++|+|++..|.+. .-++.|. ++..|.+||+|++
T Consensus 148 ~Q~r~y~~R~~QY~dAL~Hi-L~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~ 226 (393)
T KOG3877|consen 148 MQDRIYNCRFDQYLDALAHI-LNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT 226 (393)
T ss_pred HHHHHHHhHHHHHHHHHHHH-HhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence 111111 1222221 2478999999877652 1222221 1247999999999
Q ss_pred CHHHHHhhhhHH--------H-HHHHH----HHHHHchHHHHHHHhCCcEEEEeCC--CCHHHHHHHHHHH
Q 024390 191 ADNFIVTNRGGS--------L-KEKLE----AYAELSKPLEDYYQKQKKLLEFQVG--SAPVETWQGLLTA 246 (268)
Q Consensus 191 ~~e~l~~Rl~~~--------~-~~rl~----~y~~~~~~l~~~y~~~~~l~~Ida~--~s~eev~~~I~~~ 246 (268)
|...+.+|+..+ + +..++ .|+++ ...-|+.+..++.-|.+ ++-+.|++.|+..
T Consensus 227 Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~---fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErl 294 (393)
T KOG3877|consen 227 PVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDS---FLREYSNHSEILAYDWTKPGDTDAVVEDIERL 294 (393)
T ss_pred CcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHH---HHHHHhhhhheeeeecccCCCchhHHHhhhhh
Confidence 999999998211 1 11222 23332 12234545566666643 4566777777643
No 117
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.81 E-value=6.9e-08 Score=82.98 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=32.2
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHH
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV 113 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~---~~~is~~dli 113 (268)
|.++..|.|.|++||||||+++.|+..++ +.+++.++.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 45788999999999999999999999875 4566776543
No 118
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.80 E-value=1.3e-07 Score=80.23 Aligned_cols=158 Identities=8% Similarity=-0.019 Sum_probs=87.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC---CC----hhHHHHHHHHhccCcccHH--------H
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP---RS----SLHKQIANAVNRGEVVSED--------I 141 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~---~~----~~g~~i~~~l~~G~~ip~~--------~ 141 (268)
+++.|+|+||+||||||+++.|.+++.-.+.+....=|..-+. +. -..+.....+..|+.+... +
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 5778999999999999999999988632233322111211000 10 0123344555555443210 1
Q ss_pred HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCC--eEEEEecC-HHHHHhhh-------hHHHHHHHHHHH
Q 024390 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEID--LVVNFKCA-DNFIVTNR-------GGSLKEKLEAYA 211 (268)
Q Consensus 142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d--~vV~Ld~~-~e~l~~Rl-------~~~~~~rl~~y~ 211 (268)
-.+-+...+. .+..+|+|.-+....+ +... .++ .+||+..| .+++.+|+ ++.+++|+....
T Consensus 83 ~~~~i~~~~~-----~g~~~i~d~~~~g~~~---l~~~-~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~ 153 (186)
T PRK14737 83 PKAFIEDAFK-----EGRSAIMDIDVQGAKI---IKEK-FPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGI 153 (186)
T ss_pred cHHHHHHHHH-----cCCeEEEEcCHHHHHH---HHHh-CCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 1222333333 3567788865433333 3332 233 68888885 58888888 345777776533
Q ss_pred HHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 212 ELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 212 ~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.+. + +...-- ..|+.+ +.++..++|.++|..+
T Consensus 154 ~e~----~-~~~~~D-~vI~N~-dle~a~~ql~~ii~~~ 185 (186)
T PRK14737 154 IEL----D-EANEFD-YKIIND-DLEDAIADLEAIICGK 185 (186)
T ss_pred HHH----h-hhccCC-EEEECc-CHHHHHHHHHHHHhcC
Confidence 221 1 111112 334434 8999999999988754
No 119
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.80 E-value=7.5e-08 Score=82.46 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
..+.|+|.|+.|+||||+|+.||+++|..++
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 3578999999999999999999999997553
No 120
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.79 E-value=1.8e-07 Score=84.59 Aligned_cols=142 Identities=14% Similarity=0.064 Sum_probs=78.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
.+..|+|.|++||||||+++.|+ ..|+..++- +|..++..++........ .
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~~~~~~~-~ 55 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVELLAQSGG-I 55 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHHHHhcCC-C
Confidence 34579999999999999999996 457655422 112222222221111100 1
Q ss_pred CccEEEEcCCcCCH--HHHHHHHhh---cCCCeEEEEecCHHHHHhhhhHHH--------HHHHHHHHHHchHHHHHHHh
Q 024390 157 GEIGFILDGLPRSR--IQAEILDQL---AEIDLVVNFKCADNFIVTNRGGSL--------KEKLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 157 ~~~g~IlDGfPr~~--~qa~~l~~~---~~~d~vV~Ld~~~e~l~~Rl~~~~--------~~rl~~y~~~~~~l~~~y~~ 223 (268)
..-.+++|-.-... ...+.+..+ .....+|||+++.+++++|+.+.- ....+...+....+..+++.
T Consensus 56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ 135 (288)
T PRK05416 56 RKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRER 135 (288)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHh
Confidence 23356677432211 111222222 223368999999999999984311 01122233333334444443
Q ss_pred CCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390 224 QKKLLEFQVG-SAPVETWQGLLTALHL 249 (268)
Q Consensus 224 ~~~l~~Ida~-~s~eev~~~I~~~L~~ 249 (268)
.+ +.||++ .+++++.++|.+.+..
T Consensus 136 AD--ivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 136 AD--LVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred CC--EEEECCCCCHHHHHHHHHHHHhc
Confidence 33 456754 6999999999998854
No 121
>PRK06696 uridine kinase; Validated
Probab=98.75 E-value=5.9e-08 Score=84.45 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--ccchhHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVR 114 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~~--~is~~dlir 114 (268)
.++.+|.|.|++||||||+|+.|++.+ |.. ++++|++..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 467899999999999999999999998 443 456777664
No 122
>PRK07667 uridine kinase; Provisional
Probab=98.75 E-value=2.5e-08 Score=84.98 Aligned_cols=139 Identities=9% Similarity=0.074 Sum_probs=75.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcC----CCChh-------------HHHHHHHHhccC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLS----PRSSL-------------HKQIANAVNRGE 135 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~----~~~~~-------------g~~i~~~l~~G~ 135 (268)
..+|.|.|+|||||||+|+.|++.++ ...+++++.+..... ...+. ...+-..+..|+
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~~ 96 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNET 96 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCCC
Confidence 37899999999999999999999873 457888887654321 01100 001111111221
Q ss_pred cccHHHHHHHHHHHHHcC-CccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHc
Q 024390 136 VVSEDIIFGLLSKRLEDG-YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELS 214 (268)
Q Consensus 136 ~ip~~~~~~ll~~~l~~~-~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~ 214 (268)
.+.-.............. ......-+|+||.-. .. ..+. ...|.+|+++||+++.++|+.++-..-.+.|+..+
T Consensus 97 ~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l--~~-~~~~--~~~d~~v~V~~~~~~~~~R~~~r~~~~~~~~~~r~ 171 (193)
T PRK07667 97 KLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFL--QR-KEWR--DFFHYMVYLDCPRETRFLRESEETQKNLSKFKNRY 171 (193)
T ss_pred eEEEeeeccccccccccceecCCCCEEEEEehhh--hh-hhHH--hhceEEEEEECCHHHHHHHHhcccHhHHHHHHHHh
Confidence 110000000000000000 011235678888532 11 1122 24699999999999999999655444556666666
Q ss_pred hHHHHHH
Q 024390 215 KPLEDYY 221 (268)
Q Consensus 215 ~~l~~~y 221 (268)
.+.++.|
T Consensus 172 ~~a~~~y 178 (193)
T PRK07667 172 WKAEDYY 178 (193)
T ss_pred HHHHHHH
Confidence 6666666
No 123
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.75 E-value=6.5e-07 Score=81.17 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=87.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC------ChhHHHHHHHHh-------------ccCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR------SSLHKQIANAVN-------------RGEVV 137 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~------~~~g~~i~~~l~-------------~G~~i 137 (268)
+++.|+|.|++||||||+|..||+++|..++-..|.+|+.+..- ..+......... .|-..
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~ 170 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFER 170 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHH
Confidence 56889999999999999999999999998543356666433210 001111111111 11111
Q ss_pred cHHH----HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCH-HHHHhhhhHHHH------HH
Q 024390 138 SEDI----IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCAD-NFIVTNRGGSLK------EK 206 (268)
Q Consensus 138 p~~~----~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~-e~l~~Rl~~~~~------~r 206 (268)
+.+. +..++...+. .+...|+.|..-.....+.+.....-.+.+++.+++ +...+|+..+.+ ++
T Consensus 171 ~~~~v~~gi~~~I~~~~~-----~g~s~IiEGvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~~r~~~~ 245 (301)
T PRK04220 171 HVEPVSVGVEAVIERALK-----EGISVIIEGVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVSRRPAER 245 (301)
T ss_pred HHHHHHHHHHHHHHHHHH-----hCCcEEEecCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhhCCchhh
Confidence 1111 2233333333 357899999876655444322211223455666555 777888733211 12
Q ss_pred HHHHHHHchHHHHHHH----hCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 207 LEAYAELSKPLEDYYQ----KQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 207 l~~y~~~~~~l~~~y~----~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+-.+.+.+..+.+|.- +.+ +-.|| +.++++..+.+.+.+.++
T Consensus 246 y~~~~~~ir~iq~~l~~~a~~~~-ip~I~-n~~i~~s~~~~~~~i~~~ 291 (301)
T PRK04220 246 YLKNFEIIREINDYIVEKAKKHG-VPVIE-NISIEETVDKILEIITER 291 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCeec-CccHHHHHHHHHHHHHHH
Confidence 2122233333334332 232 33355 667777777777777654
No 124
>PHA03132 thymidine kinase; Provisional
Probab=98.70 E-value=1.4e-07 Score=92.07 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC---cccHHHHH----------H
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE---VVSEDIIF----------G 144 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~---~ip~~~~~----------~ 144 (268)
+++|+|+|+.||||||+++.|++.+|..++-+.+=+.....-.+..++.+.+.+.++. .-+...+. .
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pfl 336 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPFR 336 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHH
Confidence 7899999999999999999999998544332211000000001235677777765442 22222221 1
Q ss_pred HHHHHHHcC---------CccCccEEEEcCCcCCH-H-H---------------HHHHHhh--cCCCeEEEEecCHHHHH
Q 024390 145 LLSKRLEDG---------YYRGEIGFILDGLPRSR-I-Q---------------AEILDQL--AEIDLVVNFKCADNFIV 196 (268)
Q Consensus 145 ll~~~l~~~---------~~~~~~g~IlDGfPr~~-~-q---------------a~~l~~~--~~~d~vV~Ld~~~e~l~ 196 (268)
++.+++... ....+..+|.|-++.+. . + ...+..+ ..||++|+|++++++++
T Consensus 337 ~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~al 416 (580)
T PHA03132 337 ALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEENL 416 (580)
T ss_pred HHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHHH
Confidence 112222211 11234567888776432 1 1 1122222 35899999999999999
Q ss_pred hhhh
Q 024390 197 TNRG 200 (268)
Q Consensus 197 ~Rl~ 200 (268)
+|+.
T Consensus 417 kRIk 420 (580)
T PHA03132 417 RRVK 420 (580)
T ss_pred HHHH
Confidence 9984
No 125
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.69 E-value=1.9e-07 Score=78.42 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhcCCCChhHHHHHHHHhccCcc------c--HH---HHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVV------S--ED---IIFG 144 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i------p--~~---~~~~ 144 (268)
+.+|++-|++-|||||+|+.|.+.+.-+ |+++|.++.. ++++.. ..+.-+ + .. .+..
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~-~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~ 70 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM-MPPGRY---------RPGDGLEPAGDRPDGGPLFRRLYA 70 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH-S-GGGG---------TSTTSEEEETTSEEE-HHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh-cCcccc---------cCCccccccccCCchhHHHHHHHH
Confidence 3579999999999999999999999655 7777776653 221100 000000 0 01 1111
Q ss_pred HHHHHHHcCCccCccEEEEcCCcCCHHH-HHHHHhh--cCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHH
Q 024390 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQ-AEILDQL--AEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYY 221 (268)
Q Consensus 145 ll~~~l~~~~~~~~~g~IlDGfPr~~~q-a~~l~~~--~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y 221 (268)
.+...+... ...+..+|+|+....... .+.+.+. ..+-++|-+.||.|++.+|-..+-++..-.-..+...+ +
T Consensus 71 ~~~~~iaa~-a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G~a~~q~~~V---h 146 (174)
T PF07931_consen 71 AMHAAIAAM-ARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIGLAAWQAEHV---H 146 (174)
T ss_dssp HHHHHHHHH-HHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTTHHHHHTTGG---G
T ss_pred HHHHHHHHH-HhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchHHHHHHHhhc---c
Confidence 122222211 135788999987655543 4555343 34557999999999988887333221111111111111 1
Q ss_pred HhCCcEEEEeCC-CCHHHHHHHHHHHH
Q 024390 222 QKQKKLLEFQVG-SAPVETWQGLLTAL 247 (268)
Q Consensus 222 ~~~~~l~~Ida~-~s~eev~~~I~~~L 247 (268)
.....=+.||++ .+++|..+.|.+.+
T Consensus 147 ~~~~YDleVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 147 EGGRYDLEVDTSATSPEECAREILARL 173 (174)
T ss_dssp TT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 111122678976 68999999998765
No 126
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.67 E-value=2.6e-08 Score=77.91 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=52.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHH---HHHHHHHHcCCccC
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF---GLLSKRLEDGYYRG 157 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~---~ll~~~l~~~~~~~ 157 (268)
|+|.|+|||||||+|+.|+++++..+ .+.............. ...........+... ..+.+.... ...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 72 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDII---RDIAPEEDIVDSIDDN---PDWKENKRLDMEFQDELLDSIIQAIRR--MNK 72 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHH---HHHHHHTTSHSSHCCH---HCCCCCCCSCHHHHHHHHHHHHHHHHH--HTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHH---HHHHHhcCCccccccc---chhhhhhhhhhhhHHHHHHHHHHhhcc--ccc
Confidence 78999999999999999999982211 1222111100000000 001111222222222 222222210 124
Q ss_pred ccEEEEcCCcCCHHHHHHHHhhcCCCeE-EEEecCHHHHHhhhh
Q 024390 158 EIGFILDGLPRSRIQAEILDQLAEIDLV-VNFKCADNFIVTNRG 200 (268)
Q Consensus 158 ~~g~IlDGfPr~~~qa~~l~~~~~~d~v-V~Ld~~~e~l~~Rl~ 200 (268)
...+|+||...... ........ |+|+||++++.+|+.
T Consensus 73 ~~~~iid~~~~~~~------~~~~~~~~~i~L~~~~e~~~~R~~ 110 (129)
T PF13238_consen 73 GRNIIIDGILSNLE------LERLFDIKFIFLDCSPEELRKRLK 110 (129)
T ss_dssp TSCEEEEESSEEEC------ETTEEEESSEEEE--HHHHHHHHH
T ss_pred CCcEEEecccchhc------ccccceeeEEEEECCHHHHHHHHH
Confidence 67789998643211 00111222 999999999999994
No 127
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.67 E-value=2.7e-07 Score=75.46 Aligned_cols=104 Identities=17% Similarity=0.102 Sum_probs=59.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHh---CCC--ccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH--HHHHHcC
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SKRLEDG 153 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l---~~~--~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll--~~~l~~~ 153 (268)
|+|+|.|||||||+|+.|++.+ +.. +++. |-++..+........ .. ..+....+. ...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~--------~~--~~~~~~~~~~~a~~l~-- 68 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSR--------ED--REENIRRIAEVAKLLA-- 68 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCc--------ch--HHHHHHHHHHHHHHHH--
Confidence 7899999999999999999998 543 3443 445543321110000 00 001111111 11222
Q ss_pred CccCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhh
Q 024390 154 YYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 154 ~~~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl 199 (268)
..+..+|+|..-....+...+.+.. .+-.+|+|++|.+++.+|.
T Consensus 69 --~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~ 114 (149)
T cd02027 69 --DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRD 114 (149)
T ss_pred --hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhC
Confidence 1356788886544444444444443 3456899999999999986
No 128
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.65 E-value=2.5e-07 Score=92.27 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH--HHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SKR 149 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll--~~~ 149 (268)
++..|+++|.|||||||+|+.|+++++ +.+++. |.+|..+..+......-+ ......+. ...
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r~~l~~~~~~~~~~r----------~~~~~~l~~~a~~ 527 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVRHGLNRDLGFSDADR----------VENIRRVAEVARL 527 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhhhccCCCCCCCHHHH----------HHHHHHHHHHHHH
Confidence 578999999999999999999999973 456666 445554432111110000 01111111 111
Q ss_pred HHcCCccCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhhhHHHH--HHHHHHHHHchHHHHHHHh-C
Q 024390 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELSKPLEDYYQK-Q 224 (268)
Q Consensus 150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~-~ 224 (268)
+. ..+..+|+|..-....+.+.+.+.. ..-++|||+++.+.+.+|....+- .+-..++. ...+...|.. .
T Consensus 528 ~~----~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~-l~~~r~~y~~P~ 602 (632)
T PRK05506 528 MA----DAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKN-FTGIDSPYEAPE 602 (632)
T ss_pred HH----hCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhcccccccc-ccccccCCCCCC
Confidence 11 2356678886433344444444432 234799999999999999521110 01011110 1111122332 2
Q ss_pred CcEEEEeC-CCCHHHHHHHHHHHHHh
Q 024390 225 KKLLEFQV-GSAPVETWQGLLTALHL 249 (268)
Q Consensus 225 ~~l~~Ida-~~s~eev~~~I~~~L~~ 249 (268)
.--+.||. +.+++++.++|.++|..
T Consensus 603 ~a~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 603 NPELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence 23456776 67999999999999875
No 129
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.63 E-value=2.9e-06 Score=70.30 Aligned_cols=162 Identities=13% Similarity=0.126 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH---HHHHHcC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL---SKRLEDG 153 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll---~~~l~~~ 153 (268)
++.+++.|.||+||||+++.+.+.+ +...++-|+++-+...... + -+.++.+. .+|.+.-..+. .+++.+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~g-l-ve~rD~~R---klp~e~Q~~lq~~Aa~rI~~~ 78 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKG-L-VEHRDEMR---KLPLENQRELQAEAAKRIAEM 78 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhC-C-cccHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999 7788999998866422100 0 00111222 13333332222 2333322
Q ss_pred CccCccEEEEcCCc-----CCHH--HHHHHHhhcCCCeEEEEecCHHHHHhhhh-H-------HHHHHHHHHHHHch-HH
Q 024390 154 YYRGEIGFILDGLP-----RSRI--QAEILDQLAEIDLVVNFKCADNFIVTNRG-G-------SLKEKLEAYAELSK-PL 217 (268)
Q Consensus 154 ~~~~~~g~IlDGfP-----r~~~--qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-~-------~~~~rl~~y~~~~~-~l 217 (268)
...+|+|+.- .... -=.+.-+..+||++|.|..+++.++.|-. + ...+-+...++... ..
T Consensus 79 ----~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA 154 (189)
T COG2019 79 ----ALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAA 154 (189)
T ss_pred ----hhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHH
Confidence 1126666421 0000 00122234689999999999999888761 1 01111222111111 01
Q ss_pred HHHHHhCC-cEEEEe-CCCCHHHHHHHHHHHHH
Q 024390 218 EDYYQKQK-KLLEFQ-VGSAPVETWQGLLTALH 248 (268)
Q Consensus 218 ~~~y~~~~-~l~~Id-a~~s~eev~~~I~~~L~ 248 (268)
..|---.+ .+..|. -+..+++..++|...|.
T Consensus 155 ~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 155 MAYAILLGATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred HHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 11111123 344444 35689999999988775
No 130
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.61 E-value=4.9e-07 Score=74.56 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=60.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHHhhcCCCChhHHHHH-HHHhccCcccHHHHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQDLSPRSSLHKQIA-NAVNRGEVVSEDIIFGLLSKRL 150 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l---~~--~~is~~dlir~~~~~~~~~g~~i~-~~l~~G~~ip~~~~~~ll~~~l 150 (268)
+|..|.|.|.|||||||+|+.|.+++ |. .+++. |.+|..+...-.....-+ +.+. ...-+...+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~r---------r~~~~A~ll 70 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIR---------RIAEVAKLL 70 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHH---------HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHH---------HHHHHHHHH
Confidence 46789999999999999999999987 33 34544 666665543211111000 0000 011222333
Q ss_pred HcCCccCccEEEEcCCcCCHHHHHHHHhhcC--CCeEEEEecCHHHHHhhhh
Q 024390 151 EDGYYRGEIGFILDGLPRSRIQAEILDQLAE--IDLVVNFKCADNFIVTNRG 200 (268)
Q Consensus 151 ~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~--~d~vV~Ld~~~e~l~~Rl~ 200 (268)
.. .+.-+|+...-......+...+... .-+-||++||.+++.+|-.
T Consensus 71 ~~----~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 71 AD----QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp HH----TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTT
T ss_pred Hh----CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCc
Confidence 32 3556677654333333333433333 3469999999999999964
No 131
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.60 E-value=1.2e-07 Score=80.63 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=32.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQD 116 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~ 116 (268)
+|.|.|+|||||||+|+.|++.+ ++.+|++++.....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~ 38 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPE 38 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCc
Confidence 37899999999999999999999 78999999887643
No 132
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.58 E-value=4.7e-06 Score=79.52 Aligned_cols=168 Identities=15% Similarity=0.100 Sum_probs=88.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC------ChhHHHH---HHHHhccC------cccHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR------SSLHKQI---ANAVNRGE------VVSED 140 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~------~~~g~~i---~~~l~~G~------~ip~~ 140 (268)
.++..|+|.|+||+||||++..||+++|+.++-..|.+|+.+..- ..+.... -..+..+. ...+.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~ 332 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE 332 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence 357889999999999999999999999998654446666643211 0010000 01111111 11111
Q ss_pred H--------------HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCC-eEEEEecCHH-HHHhhhhHHH-
Q 024390 141 I--------------IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEID-LVVNFKCADN-FIVTNRGGSL- 203 (268)
Q Consensus 141 ~--------------~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d-~vV~Ld~~~e-~l~~Rl~~~~- 203 (268)
+ +..++.+.+. .+..+|+||..-...-.+. .....+. +.|.+.|+++ ...+|+..+-
T Consensus 333 vi~Gf~~q~~~V~~gi~~vI~r~l~-----eG~SvIIEGVHl~P~~i~~-~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~ 406 (475)
T PRK12337 333 VLRGFRDQVQQVAVGLGAIQERSAQ-----EGTSLVLEGVHLVPGYLRH-PYQAGALVVPMLVTLPDEALHRRRFELRDR 406 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----cCCeEEEECCCCCHHHHHH-HHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence 1 1223333333 4778999996544332221 1122333 3456666665 5566663321
Q ss_pred -------HHHHHHHHHHchHHHHHHHhC---CcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 204 -------KEKLEAYAELSKPLEDYYQKQ---KKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 204 -------~~rl~~y~~~~~~l~~~y~~~---~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.+|+-.|-.++..+.+|.-+. ..+-.|+ +.++++..+.+.+.+...
T Consensus 407 ~~~~~r~~~ky~~~f~~IR~IQdyLv~~A~~~~ipvI~-n~nid~tv~~~l~~i~~~ 462 (475)
T PRK12337 407 ETGASRPRERYLRHFEEIRLIQDHLLRLARQEGVPVLP-GEDLDESIDKALEVVLRR 462 (475)
T ss_pred hccCCCchhHHHHhHHHHHHHHHHHHHHHHHcCCCeec-CccHHHHHHHHHHHHHHH
Confidence 233334444555566666432 1233344 566777777776666544
No 133
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.57 E-value=1.2e-06 Score=75.00 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC---CCccchhH-HHHhhcCC-CChhHHHH-HHHHhccCcccHHHHHHHHHHHHHc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSS-IVRQDLSP-RSSLHKQI-ANAVNRGEVVSEDIIFGLLSKRLED 152 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~---~~~is~~d-lir~~~~~-~~~~g~~i-~~~l~~G~~ip~~~~~~ll~~~l~~ 152 (268)
+.|++.|+|||||||.|+.|++.+. ...++.+. ..+-.... .-+..++. ++.+. +-...+|..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~-------ks~~rlldSalk- 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFL-------KSVERLLDSALK- 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHH-------HHHHHHHHHHhc-
Confidence 5799999999999999999999873 22333321 22111110 11111111 11111 111223333332
Q ss_pred CCccCccEEEEcCC--cCC-HHHHHHHH-hhcCCCeEEEEecCHHHHHhhh
Q 024390 153 GYYRGEIGFILDGL--PRS-RIQAEILD-QLAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 153 ~~~~~~~g~IlDGf--Pr~-~~qa~~l~-~~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
+.-+|+|.. -.. ..|....- +...+-++|++.||.+++.+|.
T Consensus 74 -----n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN 119 (261)
T COG4088 74 -----NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN 119 (261)
T ss_pred -----ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh
Confidence 345677753 111 12332221 2346678999999999999998
No 134
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.57 E-value=5.2e-07 Score=77.10 Aligned_cols=116 Identities=12% Similarity=0.133 Sum_probs=62.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccCccc-------HHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS-------EDIIFGL 145 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip-------~~~~~~l 145 (268)
.++..++|.|+|||||||++..+.+.+ ++.+|+.|++ +...+. ...+... ...... ..+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p~----~~~~~~~--~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHPD----YDELLKA--DPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGSTT----HHHHHHH--HCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhccc----hhhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence 466789999999999999999999987 7788888654 454432 1111110 011100 1223334
Q ss_pred HHHHHHcCCccCccEEEEcCCcCCHHHHH-HHHhhcC--C-CeEEEEecCHHHHHhhhhHHH
Q 024390 146 LSKRLEDGYYRGEIGFILDGLPRSRIQAE-ILDQLAE--I-DLVVNFKCADNFIVTNRGGSL 203 (268)
Q Consensus 146 l~~~l~~~~~~~~~g~IlDGfPr~~~qa~-~l~~~~~--~-d~vV~Ld~~~e~l~~Rl~~~~ 203 (268)
+...+. .+..+|+||.-++..... .++.+.. . -.++++.++++..+.|..++.
T Consensus 86 ~~~a~~-----~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 86 IEYAIE-----NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp HHHHHH-----CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred HHHHHH-----cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence 444444 356899998766555443 3443321 2 247888999999999985444
No 135
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.56 E-value=4.4e-07 Score=78.46 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC---ccchhHHHHhhcCC------CC----h-------hHHHHHHHHhccC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP---RISMSSIVRQDLSP------RS----S-------LHKQIANAVNRGE 135 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~---~is~~dlir~~~~~------~~----~-------~g~~i~~~l~~G~ 135 (268)
.+..+|.|.|++||||||+|+.|++.++.. .|+.|+.....-.. .. + +.+.+.. +.+|+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~-L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKD-LKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHH-HHcCC
Confidence 456789999999999999999999999854 66667666432110 00 0 1111211 22233
Q ss_pred cccHHHHHHHHHHHHHcC-CccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh-hH-------HHHHH
Q 024390 136 VVSEDIIFGLLSKRLEDG-YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR-GG-------SLKEK 206 (268)
Q Consensus 136 ~ip~~~~~~ll~~~l~~~-~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl-~~-------~~~~r 206 (268)
.+..-...-.-..+.... ......-+|++|+---.. +.+.. ..|+.||++++.++++.|. .. .....
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~--~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~v 160 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD--LMDLKIFVDTDADVRLIRRIKRDVQERGRDLESV 160 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh--hcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHH
Confidence 221100000000000000 011356678899732111 12222 4689999999999887776 22 24566
Q ss_pred HHHHHHHchHHHHHHHh
Q 024390 207 LEAYAELSKPLEDYYQK 223 (268)
Q Consensus 207 l~~y~~~~~~l~~~y~~ 223 (268)
+++|....+|..+.|-+
T Consensus 161 i~qy~~~vkp~~~~fIe 177 (218)
T COG0572 161 IEQYVKTVRPMYEQFIE 177 (218)
T ss_pred HHHHHHhhChhhhhccC
Confidence 77888777777666643
No 136
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.55 E-value=2.7e-06 Score=71.70 Aligned_cols=157 Identities=12% Similarity=0.097 Sum_probs=92.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC---CCC----hhHHHHHHHHhccCcccHH--------H
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS---PRS----SLHKQIANAVNRGEVVSED--------I 141 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~---~~~----~~g~~i~~~l~~G~~ip~~--------~ 141 (268)
+|+.++|.||+|+||||+.+.|-+..+ .++|+..--|..-+ ++. -..++.++.+++|+.+... .
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 788999999999999999999999884 34454433333211 111 1235566677776654321 1
Q ss_pred HHHHHHHHHHcCCccCccEEEEcCCcCCHHH-HHHHHhhcCCCeEEEEecCH-HHHHhhh-------hHHHHHHHHHHHH
Q 024390 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ-AEILDQLAEIDLVVNFKCAD-NFIVTNR-------GGSLKEKLEAYAE 212 (268)
Q Consensus 142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~q-a~~l~~~~~~d~vV~Ld~~~-e~l~~Rl-------~~~~~~rl~~y~~ 212 (268)
-..-+...+. .+..+|+|= ..| +..+.+..+....||+.+|. +++.+|+ ++.+++|+.....
T Consensus 82 ~~~~ve~~~~-----~G~~vildI----d~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~ 152 (191)
T COG0194 82 SREPVEQALA-----EGKDVILDI----DVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKK 152 (191)
T ss_pred cHHHHHHHHh-----cCCeEEEEE----ehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 1233333443 345666651 123 33333323333455555543 4677777 5678899988777
Q ss_pred HchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 213 LSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 213 ~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
......+ | +.+ .+ +.+.+...+++.+++...
T Consensus 153 Ei~~~~~-f---dyv-iv--Ndd~e~a~~~l~~ii~ae 183 (191)
T COG0194 153 EISHADE-F---DYV-IV--NDDLEKALEELKSIILAE 183 (191)
T ss_pred HHHHHHh-C---CEE-EE--CccHHHHHHHHHHHHHHH
Confidence 6554332 2 333 23 567888899998888765
No 137
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.54 E-value=9.8e-07 Score=73.70 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=91.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC-ccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP-RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~~-~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (268)
.++..|.|.|.+||||||+|..|.+++ |.. ++=-||-+|.-+..+-...++ +-..+ --.+.-+.+.+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~e--dR~en------iRRvaevAkll~ 92 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSRE--DRIEN------IRRVAEVAKLLA 92 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChH--HHHHH------HHHHHHHHHHHH
Confidence 567889999999999999999999987 332 222257777776532111100 00000 001122223333
Q ss_pred cCCccCccEEEEcCCcCCHHHH-HHHHhh-cC-CCeEEEEecCHHHHHhhhhHHHHHHHHH-HHHHchHHHHHHHhC-Cc
Q 024390 152 DGYYRGEIGFILDGLPRSRIQA-EILDQL-AE-IDLVVNFKCADNFIVTNRGGSLKEKLEA-YAELSKPLEDYYQKQ-KK 226 (268)
Q Consensus 152 ~~~~~~~~g~IlDGfPr~~~qa-~~l~~~-~~-~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~-y~~~~~~l~~~y~~~-~~ 226 (268)
. ...++|-.|-.-.... +...+. .. .-+=||++||.+++.+|=++-+=++-.. --.+.-.+-.-|+.+ +-
T Consensus 93 d-----aG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE~P~~P 167 (197)
T COG0529 93 D-----AGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEAPENP 167 (197)
T ss_pred H-----CCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCCCCCCC
Confidence 2 3345555543322221 222222 22 2358999999999999985443211110 001112233445544 34
Q ss_pred EEEEeC-CCCHHHHHHHHHHHHHhhcc
Q 024390 227 LLEFQV-GSAPVETWQGLLTALHLQHI 252 (268)
Q Consensus 227 l~~Ida-~~s~eev~~~I~~~L~~~~~ 252 (268)
-+++|+ ..++++..++|..+|....+
T Consensus 168 el~l~t~~~~vee~v~~i~~~l~~~~~ 194 (197)
T COG0529 168 ELHLDTDRNSVEECVEQILDLLKERKI 194 (197)
T ss_pred eeEeccccCCHHHHHHHHHHHHHhccc
Confidence 677886 58999999999999987654
No 138
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.53 E-value=1.9e-07 Score=66.35 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
.|+|+|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999986
No 139
>COG0645 Predicted kinase [General function prediction only]
Probab=98.50 E-value=2.7e-06 Score=70.55 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHH----HHHHHHHHHHcCC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI----IFGLLSKRLEDGY 154 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~----~~~ll~~~l~~~~ 154 (268)
..+++.|.|||||||+|+.|++.+|..+|..|+ +|+.+.. .+... -...| ....+. ...++.....-
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~-irk~L~g-~p~~~----r~~~g-~ys~~~~~~vy~~l~~~A~l~-- 72 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDV-IRKRLFG-VPEET----RGPAG-LYSPAATAAVYDELLGRAELL-- 72 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHH-HHHHhcC-Ccccc----cCCCC-CCcHHHHHHHHHHHHHHHHHH--
Confidence 468999999999999999999999999999955 5555443 11000 00011 111111 11111111110
Q ss_pred ccCccEEEEcCCcCCHHHHHHHHhh---cC-CCeEEEEecCHHHHHhhhh
Q 024390 155 YRGEIGFILDGLPRSRIQAEILDQL---AE-IDLVVNFKCADNFIVTNRG 200 (268)
Q Consensus 155 ~~~~~g~IlDGfPr~~~qa~~l~~~---~~-~d~vV~Ld~~~e~l~~Rl~ 200 (268)
...+..+|+|+......+-+....+ .. +-..|+++++.+++..|+.
T Consensus 73 l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~ 122 (170)
T COG0645 73 LSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLA 122 (170)
T ss_pred HhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHH
Confidence 1247789999865555554444433 22 3456999999999999993
No 140
>PTZ00301 uridine kinase; Provisional
Probab=98.49 E-value=1.2e-06 Score=75.88 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVRQ 115 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dlir~ 115 (268)
+.|.|.|+|||||||+|+.|++.++ +..+++|+..+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~ 47 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRD 47 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccC
Confidence 6799999999999999999988762 235666766543
No 141
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.47 E-value=3e-06 Score=72.05 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=29.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVR 114 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir 114 (268)
.|.|.|++||||||+++.|+..+ +..++++++...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 37899999999999999999987 366788877663
No 142
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.45 E-value=3.1e-06 Score=75.94 Aligned_cols=105 Identities=20% Similarity=0.131 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhhcC-CCChhHHHHHHHHhccCcccHHHHHHHHHHHHHc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~~~-~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~ 152 (268)
+.|+|+|.|||||||+|+.|++.+ .+.+++-+++...... ..+.-.+.++. .+...+...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~-----------~l~s~v~r~ls- 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARG-----------SLKSAVERALS- 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHH-----------HHHHHHHHHHT-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHH-----------HHHHHHHHhhc-
Confidence 579999999999999999999975 3345664444412110 00111111111 11222333332
Q ss_pred CCccCccEEEEcCCcCCHH---HHHHHHh-hcCCCeEEEEecCHHHHHhhh
Q 024390 153 GYYRGEIGFILDGLPRSRI---QAEILDQ-LAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 153 ~~~~~~~g~IlDGfPr~~~---qa~~l~~-~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
...-+|+|+--.-.. +.-.+-+ ....-++|+++|+.|.+++|.
T Consensus 70 ----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N 116 (270)
T PF08433_consen 70 ----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRN 116 (270)
T ss_dssp ----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHH
T ss_pred ----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhh
Confidence 346789997422211 2222222 234557999999999999998
No 143
>PLN02165 adenylate isopentenyltransferase
Probab=98.43 E-value=3.1e-06 Score=77.80 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=33.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl 112 (268)
.++..|+|+||+|||||+++..||+.++...||+|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 4667899999999999999999999999999999876
No 144
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.40 E-value=1.6e-06 Score=80.03 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=29.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCC------CccchhHHHH
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEV------PRISMSSIVR 114 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~------~~is~~dlir 114 (268)
.+|+|+|||||||+++.|++.+.. .+++.||++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 689999999999999999988763 4899999884
No 145
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.33 E-value=1.2e-06 Score=73.77 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=31.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQ 115 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~ 115 (268)
.|.|.|+|||||||+|+.|++.+ +...|++++..+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 37899999999999999999996 4568999998864
No 146
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.33 E-value=1.1e-05 Score=67.96 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=80.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC----CccchhHHHHhhcCCCCh----hHHHHHHHHhccCcccH--------HH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV----PRISMSSIVRQDLSPRSS----LHKQIANAVNRGEVVSE--------DI 141 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~----~~is~~dlir~~~~~~~~----~g~~i~~~l~~G~~ip~--------~~ 141 (268)
+..|+|+||+||||+|+++.|.+.+.- +.-.+..-.|.-..++.. ..+...+.++.|+.+.. .+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 356899999999999999999988752 112221222221111111 12333444444432210 01
Q ss_pred HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecC-HHHHHhhhh-------HHHHHHHHHHHHH
Q 024390 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNRG-------GSLKEKLEAYAEL 213 (268)
Q Consensus 142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~-~e~l~~Rl~-------~~~~~rl~~y~~~ 213 (268)
...-+...+.+ +...|+|.-|. -+..|.....--++||+..+ .+.+.+|+. +.+.+|+...++.
T Consensus 82 ~~~~i~~~~~~-----gk~~il~~~~~---g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~ 153 (183)
T PF00625_consen 82 SKSAIDKVLEE-----GKHCILDVDPE---GVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKE 153 (183)
T ss_dssp EHHHHHHHHHT-----TTEEEEEETHH---HHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHH
T ss_pred ccchhhHhhhc-----CCcEEEEccHH---HHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 12223333333 45577764332 23444443222357888766 567777762 2344444444332
Q ss_pred chHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 214 ~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
. .++.+.+ ..|. +.+.++++++|.++|..
T Consensus 154 ~----~~~~~fd--~vi~-n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 154 F----EHYNEFD--YVIV-NDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp H----GGGGGSS--EEEE-CSSHHHHHHHHHHHHHH
T ss_pred H----hHhhcCC--EEEE-CcCHHHHHHHHHHHHHh
Confidence 2 1222222 2344 45899999999999875
No 147
>PRK05439 pantothenate kinase; Provisional
Probab=98.31 E-value=7.7e-06 Score=74.72 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVR 114 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dlir 114 (268)
.++..|.|.|+|||||||+|+.|++.++ +..|++|+.+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 4567899999999999999999998664 35678877663
No 148
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=2.6e-05 Score=68.63 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=92.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC----C--ChhHHHHHHHHhc-cCccc--------HH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP----R--SSLHKQIANAVNR-GEVVS--------ED 140 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~----~--~~~g~~i~~~l~~-G~~ip--------~~ 140 (268)
.++.+|+|-|+||.||||+|..||.++|+.++=..|.+|+.+.+ . ..+....-.+-+. +...+ .+
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~d 166 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFED 166 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHH
Confidence 56788999999999999999999999999876555666665431 0 1111111111100 00000 01
Q ss_pred ---H----HHHHHHHHHHcCCccCccEEEEcCC---cCCHHHHHHHHhhcCCCeEEEEecCHHH-HHhhhhHHH------
Q 024390 141 ---I----IFGLLSKRLEDGYYRGEIGFILDGL---PRSRIQAEILDQLAEIDLVVNFKCADNF-IVTNRGGSL------ 203 (268)
Q Consensus 141 ---~----~~~ll~~~l~~~~~~~~~g~IlDGf---Pr~~~qa~~l~~~~~~d~vV~Ld~~~e~-l~~Rl~~~~------ 203 (268)
. +...+...+.+ +..+|++|. |.-.. -+.+ ....+.++|-+++|+ ...|+.++.
T Consensus 167 qa~~V~~GI~~VI~RAi~e-----G~~lIIEGvHlVPg~i~-~~~~---~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~ 237 (299)
T COG2074 167 QASAVMVGIEAVIERAIEE-----GEDLIIEGVHLVPGLIK-EEAL---GNNVFMFMLYIADEELHRERFYDRIRYTHAS 237 (299)
T ss_pred HhHHHHHHHHHHHHHHHhc-----CcceEEEeeeecccccc-Hhhh---ccceEEEEEEeCCHHHHHHHHHHHHHHHhcc
Confidence 1 12344444543 566788874 22111 1111 233556666666654 455664432
Q ss_pred --HHHHHHHHHHchHHHHHHHhCC---cEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 204 --KEKLEAYAELSKPLEDYYQKQK---KLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 204 --~~rl~~y~~~~~~l~~~y~~~~---~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
-.|+-.|..++..+-+|..+.. .+=.|+ +.+.++..+++++.+....
T Consensus 238 rp~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~-n~di~etv~~il~~i~~~~ 289 (299)
T COG2074 238 RPGGRYLEYFKEIRTIHDYLVERAREHGVPVIE-NDDIDETVDRILEDIRKRT 289 (299)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcCCCeec-cccHHHHHHHHHHHHHHHH
Confidence 1345556666666666664321 233444 6678999999988887654
No 149
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.28 E-value=4.3e-06 Score=72.80 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=27.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV 113 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dli 113 (268)
+|.|.|++||||||+|+.|+..++ +.+|++++..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 367999999999999999999883 3456777654
No 150
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.26 E-value=2.9e-05 Score=69.69 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
..|+|.|.+||||||-.+.|. .+|+..|+= +|..++.+++........-...
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lE-D~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~ 53 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALE-DLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK 53 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHH-hcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence 468999999999999888885 466654421 4455555555332221110123
Q ss_pred cEEEEcCCcCCH-HH-HHHHHhh--cCC-CeEEEEecCHHHHHhhhhH-----------HHHHHHHHHHHHchHHHHHHH
Q 024390 159 IGFILDGLPRSR-IQ-AEILDQL--AEI-DLVVNFKCADNFIVTNRGG-----------SLKEKLEAYAELSKPLEDYYQ 222 (268)
Q Consensus 159 ~g~IlDGfPr~~-~q-a~~l~~~--~~~-d~vV~Ld~~~e~l~~Rl~~-----------~~~~rl~~y~~~~~~l~~~y~ 222 (268)
-.+++|---+.. .. .+.+.+. ... -.+|||+|+++++++|..+ .+.+-++.-++...++.+.
T Consensus 54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~-- 131 (284)
T PF03668_consen 54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRER-- 131 (284)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHh--
Confidence 346777321111 11 1222222 133 3599999999999999832 1222233333444444332
Q ss_pred hCCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390 223 KQKKLLEFQVG-SAPVETWQGLLTALHL 249 (268)
Q Consensus 223 ~~~~l~~Ida~-~s~eev~~~I~~~L~~ 249 (268)
.+ ++||++ .++.++.+.|.+.+..
T Consensus 132 -Ad--~vIDTs~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 132 -AD--LVIDTSNLSVHQLRERIRERFGG 156 (284)
T ss_pred -CC--EEEECCCCCHHHHHHHHHHHhcc
Confidence 12 467864 7899999999988864
No 151
>PRK07429 phosphoribulokinase; Provisional
Probab=98.22 E-value=3.2e-06 Score=77.91 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV 113 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~---~~~is~~dli 113 (268)
.++.+|.|.|++||||||+++.|++.++ ...++.+++.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 4678999999999999999999999987 4567777753
No 152
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.22 E-value=1.4e-05 Score=69.86 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=32.5
Q ss_pred CcchHhhhccccccCCCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 53 SDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
+-++.|.+.+.+... .+.++.+|.|.|++||||||+++.|+..+.
T Consensus 14 ~~~~~l~~~~~~~~~------~~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 14 AVHKPLLRRLAALQA------EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred HHHHHHHHHHHHHHh------cCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345566655433322 124678899999999999999999998874
No 153
>PHA00729 NTP-binding motif containing protein
Probab=98.20 E-value=1.1e-05 Score=70.37 Aligned_cols=105 Identities=11% Similarity=0.045 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC--CccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~--~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
..|+|+|+||+||||+|..|+++++. ..++.++.-.... .....++.+.....+....... .
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~--------------~~~~fid~~~Ll~~L~~a~~~~--~ 81 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYV--------------QNSYFFELPDALEKIQDAIDND--Y 81 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcC--------------CcEEEEEHHHHHHHHHHHHhcC--C
Confidence 47999999999999999999998752 2222221111110 0111233343444444433332 1
Q ss_pred CccEEEEcCCcC--CH-H-HHH------HHHhhc--CCCeEEEEecCHHHHHhhh
Q 024390 157 GEIGFILDGLPR--SR-I-QAE------ILDQLA--EIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 157 ~~~g~IlDGfPr--~~-~-qa~------~l~~~~--~~d~vV~Ld~~~e~l~~Rl 199 (268)
...-+|+|++-- .. . ..+ .+.+.. .+++++++.++++.+.+++
T Consensus 82 ~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~L 136 (226)
T PHA00729 82 RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYL 136 (226)
T ss_pred CCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHH
Confidence 123368898311 10 0 101 122222 5889999999999999998
No 154
>COG4639 Predicted kinase [General function prediction only]
Probab=98.20 E-value=2.4e-05 Score=64.10 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-cccHHHHHHHHHHHHHcCCccC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-VVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
..++++|+|||||||.++... .....+|.+++=+.. |....+....|. ..-.++....+++++. .
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l-------g~~~~~e~sqk~~~~~~~~l~~~l~qrl~-----~ 68 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLL-------GVSASKENSQKNDELVWDILYKQLEQRLR-----R 68 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHh-------hhchhhhhccccHHHHHHHHHHHHHHHHH-----c
Confidence 468999999999999998643 356677776543332 111111111111 0112334444555554 3
Q ss_pred ccEEEEcCCcCCHHHHHHHH----hhcCCCeEEEEecCHHHHHhhh
Q 024390 158 EIGFILDGLPRSRIQAEILD----QLAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 158 ~~g~IlDGfPr~~~qa~~l~----~~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
+...|+|..-....+.+.+- ++.-...+|+||.|.+.|.+|.
T Consensus 69 Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRN 114 (168)
T COG4639 69 GKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARN 114 (168)
T ss_pred CCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHh
Confidence 67789998654444433332 2334456899999999999996
No 155
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.19 E-value=5.7e-05 Score=65.86 Aligned_cols=149 Identities=18% Similarity=0.261 Sum_probs=78.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHHhhcCC---------CChhHHHHHHHHhccCcccHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQDLSP---------RSSLHKQIANAVNRGEVVSEDI 141 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~--~~is~~dlir~~~~~---------~~~~g~~i~~~l~~G~~ip~~~ 141 (268)
..+..|++.|.|+.|||++|+.|+..+ |+ .+++.|+.=|+.... ..+.+..+++.+. ...
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a------~~~ 83 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA------KEA 83 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH------HHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH------HHH
Confidence 456789999999999999999999765 33 578889888877543 1222333332221 111
Q ss_pred HHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhh------------------
Q 024390 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNR------------------ 199 (268)
Q Consensus 142 ~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl------------------ 199 (268)
.+-+...+.+. .++--|+|+.=.|....+.+.+. .-.-++|-.-|+++.++++.
T Consensus 84 -l~dl~~~l~~~---~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~ 159 (222)
T PF01591_consen 84 -LEDLIEWLQEE---GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEE 159 (222)
T ss_dssp -HHHHHHHHHTS-----SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHH
T ss_pred -HHHHHHHHhcC---CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHH
Confidence 22222334432 45667999987777665555432 21224555667788777765
Q ss_pred -hHHHHHHHHHHHHHchHHHHHHHhC-CcEEEEeCCC
Q 024390 200 -GGSLKEKLEAYAELSKPLEDYYQKQ-KKLLEFQVGS 234 (268)
Q Consensus 200 -~~~~~~rl~~y~~~~~~l~~~y~~~-~~l~~Ida~~ 234 (268)
.+.+.+|++.|++...|+.+-.++. ..+..+|++.
T Consensus 160 A~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~g~ 196 (222)
T PF01591_consen 160 AIEDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINVGE 196 (222)
T ss_dssp HHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTT
T ss_pred HHHHHHHHHHhhcccccccccccccCceEEEEEcCCc
Confidence 2357789999988888876211111 1355566543
No 156
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.17 E-value=1.9e-05 Score=71.57 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV 113 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dli 113 (268)
+.+.+|.|.|++||||||+++.|+..+. +..+++++..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 4567899999999999999998877663 3346666544
No 157
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.11 E-value=1.8e-05 Score=67.32 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
+|.|.|++||||||+|+.|+..++.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4889999999999999999999973
No 158
>PLN02772 guanylate kinase
Probab=98.10 E-value=5e-05 Score=71.23 Aligned_cols=162 Identities=12% Similarity=0.083 Sum_probs=84.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhcC---CCCh----hHHHHHHHHhccCcccHH--------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLS---PRSS----LHKQIANAVNRGEVVSED-------- 140 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~~---~~~~----~g~~i~~~l~~G~~ip~~-------- 140 (268)
..+.|+|+||+|+||+|+.+.|.+.+.. ..++....=|..-. .+.. .-+.+...+.+|+.+...
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 5668999999999999999999886531 11111111111100 1100 012334444444432110
Q ss_pred HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEec--CHHHHHhhh-------hHHHHHHHHHHH
Q 024390 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKC--ADNFIVTNR-------GGSLKEKLEAYA 211 (268)
Q Consensus 141 ~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~--~~e~l~~Rl-------~~~~~~rl~~y~ 211 (268)
+-.+.+...+.+ +..+|+|=-|.. +..+.+.. ++.++.|-+ +.+++.+|+ ++.+++|+..++
T Consensus 214 Tsk~~V~~vl~~-----Gk~vILdLD~qG---ar~Lr~~~-l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~ 284 (398)
T PLN02772 214 TSIEAVEVVTDS-----GKRCILDIDVQG---ARSVRASS-LEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAE 284 (398)
T ss_pred ccHHHHHHHHHh-----CCcEEEeCCHHH---HHHHHHhc-CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 112233333332 456677633322 23333321 233333334 488999998 457889998876
Q ss_pred HHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 212 ELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 212 ~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
.+.... . +...--.+.+| .+.++.++++.++|....
T Consensus 285 ~Ei~~~-~-~~~~fD~vIvN--DdLe~A~~~L~~iL~~~~ 320 (398)
T PLN02772 285 AELEQG-K-SSGIFDHILYN--DNLEECYKNLKKLLGLDG 320 (398)
T ss_pred HHHhhc-c-ccCCCCEEEEC--CCHHHHHHHHHHHHhhcC
Confidence 543211 0 10011123333 389999999999998665
No 159
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.05 E-value=6.4e-05 Score=73.83 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSI 112 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dl 112 (268)
+...|.|.|++||||||+++.|+..+ +...|++++.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 45789999999999999999999987 4457777764
No 160
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.05 E-value=3e-06 Score=70.91 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVRQ 115 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~--~~~is~~dlir~ 115 (268)
++++|+|+|||||||+|..|+..++ ..+++++.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~ 40 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD 40 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH
Confidence 5799999999999999999999987 456666554433
No 161
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=0.00016 Score=68.62 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=59.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC----C-CccchhHHHHhhcCCCChhHHHHHHHHhccCc--ccHHHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE----V-PRISMSSIVRQDLSPRSSLHKQIANAVNRGEV--VSEDIIFGLLSKR 149 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~----~-~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~--ip~~~~~~ll~~~ 149 (268)
++..++|+||+||||||++..||..+. . +++...|..|... ..+++.+...... .+.... ..+.+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA------~eQLk~yAe~lgvp~~~~~~~-~~l~~~ 294 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA------IEQLKRYADTMGMPFYPVKDI-KKFKET 294 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH------HHHHHHHHHhcCCCeeehHHH-HHHHHH
Confidence 456799999999999999999998652 1 3333445554431 1223333232221 111112 233334
Q ss_pred HHcCCccCccEEEEc--CCc-CCHHHHHHHHhhc-------CCCeEEEEecCH
Q 024390 150 LEDGYYRGEIGFILD--GLP-RSRIQAEILDQLA-------EIDLVVNFKCAD 192 (268)
Q Consensus 150 l~~~~~~~~~g~IlD--GfP-r~~~qa~~l~~~~-------~~d~vV~Ld~~~ 192 (268)
+.. ...+.+||| |++ ++..|++.|..+. ....++.|++.-
T Consensus 295 l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 295 LAR---DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHh---CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 432 245779999 774 6777887776542 123556666553
No 162
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.00 E-value=0.00034 Score=61.94 Aligned_cols=136 Identities=21% Similarity=0.147 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
..|+|.|.+|||||+-.+.|. .+|+-.++- +|.+++-+++.-..........
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lE-DlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLE-DLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHH-hcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence 368999999999999888775 455543321 3444444444322111100134
Q ss_pred cEEEEcCCcCCHHHHHHHH----hhc---CCC-eEEEEecCHHHHHhhhhH-----------HHHHHHHHHHHHchHHHH
Q 024390 159 IGFILDGLPRSRIQAEILD----QLA---EID-LVVNFKCADNFIVTNRGG-----------SLKEKLEAYAELSKPLED 219 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~----~~~---~~d-~vV~Ld~~~e~l~~Rl~~-----------~~~~rl~~y~~~~~~l~~ 219 (268)
-.+++|= |+......++ ++. .++ .++||+++++++++|..+ .+.+-++.-++...|+.+
T Consensus 54 vAv~iDi--Rs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~ 131 (286)
T COG1660 54 VAVVIDV--RSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLRE 131 (286)
T ss_pred EEEEEec--ccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHH
Confidence 4567773 3323222222 221 223 499999999999999833 233334444445555544
Q ss_pred HHHhCCcEEEEeC-CCCHHHHHHHHHHHHHh
Q 024390 220 YYQKQKKLLEFQV-GSAPVETWQGLLTALHL 249 (268)
Q Consensus 220 ~y~~~~~l~~Ida-~~s~eev~~~I~~~L~~ 249 (268)
.-+ ++||+ +.++.++.+.|...+..
T Consensus 132 ~A~-----~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 132 IAD-----LVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred Hhh-----hEeecccCCHHHHHHHHHHHHcc
Confidence 221 35776 57999999999999875
No 163
>PLN02348 phosphoribulokinase
Probab=97.93 E-value=4.7e-05 Score=71.38 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.++..|.|.|++||||||+++.|++.+|
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999999999986
No 164
>PRK06761 hypothetical protein; Provisional
Probab=97.91 E-value=0.00019 Score=64.76 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~ 110 (268)
++.|+|.|+|||||||+++.|+++++...++..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 467999999999999999999999976555543
No 165
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.90 E-value=2.6e-05 Score=70.16 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIV 113 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dli 113 (268)
.|.|.|++||||||+++.|+..+ +...++++++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 37899999999999999999887 44567777654
No 166
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.88 E-value=8.6e-06 Score=63.72 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=27.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCc--cchhHHH
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIV 113 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~--is~~dli 113 (268)
|+|.||||+|||++++.+++.++.++ ++.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence 68999999999999999999998765 4444554
No 167
>PRK15453 phosphoribulokinase; Provisional
Probab=97.85 E-value=9.3e-05 Score=66.63 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir 114 (268)
.++++|.|.|.+||||||+|+.|++.++ ..+++.|+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4668899999999999999999998774 34566665554
No 168
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.83 E-value=0.00021 Score=60.18 Aligned_cols=113 Identities=16% Similarity=0.094 Sum_probs=57.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCC----h---hHHHH--HHH---Hhcc-------CcccHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRS----S---LHKQI--ANA---VNRG-------EVVSED 140 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~----~---~g~~i--~~~---l~~G-------~~ip~~ 140 (268)
+|.|.|..|||++++|+.||+++|+++++- +++.+...... . ..+.. ... +..+ ....++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 589999999999999999999999999998 77766543210 0 01111 111 1111 112233
Q ss_pred HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh
Q 024390 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG 200 (268)
Q Consensus 141 ~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~ 200 (268)
.+.....+.+.+. ....++|+.|. . +..+-+-.+..+-|+|.+|.+..++|+.
T Consensus 80 ~~~~~~~~~i~~l--a~~~~~Vi~GR--~---a~~il~~~~~~l~V~i~A~~~~Rv~ri~ 132 (179)
T PF13189_consen 80 KIFRAQSEIIREL--AAKGNCVIVGR--C---ANYILRDIPNVLHVFIYAPLEFRVERIM 132 (179)
T ss_dssp HHHHHHHHHHHHH--HH---EEEEST--T---HHHHTTT-TTEEEEEEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hccCCEEEEec--C---HhhhhCCCCCeEEEEEECCHHHHHHHHH
Confidence 3334333333332 12345666663 1 1222111223579999999999999983
No 169
>PRK09169 hypothetical protein; Validated
Probab=97.82 E-value=4.9e-05 Score=82.78 Aligned_cols=107 Identities=11% Similarity=-0.021 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
....|+++|++|+||||+++.|++++++.+++++..+.+. .+++|.+++.... .+.+.....|.+.+..
T Consensus 2109 ~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr~---- 2177 (2316)
T PRK09169 2109 GAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALRW---- 2177 (2316)
T ss_pred hhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhcC----
Confidence 3457999999999999999999999999999999888776 3566777655433 7777777777776642
Q ss_pred CccEEEE-cCC-cCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390 157 GEIGFIL-DGL-PRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 157 ~~~g~Il-DGf-Pr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
..+|= .|+ +........|. .-+++|+++.+.+++.+|+
T Consensus 2178 --~vVLSTGGGav~~~enr~~L~---~~GlvV~L~an~~tl~~Rt 2217 (2316)
T PRK09169 2178 --EVVLPAEGFGAAVEQARQALG---AKGLRVMRINNGFAAPDTT 2217 (2316)
T ss_pred --CeEEeCCCCcccCHHHHHHHH---HCCEEEEEECCHHHHHHHh
Confidence 11221 222 22222233333 3467999999999999998
No 170
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.80 E-value=0.0001 Score=65.54 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
....++|.||||+||||+|+.+++.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999875
No 171
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00015 Score=70.82 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=84.2
Q ss_pred CCcchHhhhccccccC---CCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHhhcCCCChhHHH
Q 024390 52 ESDSDQHRDSLRSVTL---PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLSPRSSLHKQ 126 (268)
Q Consensus 52 ~~~~~~l~~~~~~~~~---~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~--dlir~~~~~~~~~g~~ 126 (268)
+..|.+|.+.+-.+.. ...-|-.|.|| |++.||||+|||.+|+.+|.+++++++++. +++... . .+.-+.
T Consensus 196 d~~~~el~~li~~i~~Pe~~~~lGv~PprG--vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv-S--GESEkk 270 (802)
T KOG0733|consen 196 DKTLAELCELIIHIKHPEVFSSLGVRPPRG--VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV-S--GESEKK 270 (802)
T ss_pred HHHHHHHHHHHHHhcCchhHhhcCCCCCCc--eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc-C--cccHHH
Confidence 3456677665433211 12224455566 899999999999999999999999987763 455332 1 122345
Q ss_pred HHHHHhccCc--------------------ccHHHHHHHHHHHHHcCC---c--cCccEEEEcC---CcCCHHHHHHHHh
Q 024390 127 IANAVNRGEV--------------------VSEDIIFGLLSKRLEDGY---Y--RGEIGFILDG---LPRSRIQAEILDQ 178 (268)
Q Consensus 127 i~~~l~~G~~--------------------ip~~~~~~ll~~~l~~~~---~--~~~~g~IlDG---fPr~~~qa~~l~~ 178 (268)
+++.+.+... .-.++..+++.+.+...+ . ..+.++++-| -|...+ ..|.+
T Consensus 271 iRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD--paLRR 348 (802)
T KOG0733|consen 271 IRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD--PALRR 348 (802)
T ss_pred HHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC--HHHhc
Confidence 6665544221 112344444444433221 0 1245666655 333332 34566
Q ss_pred hcCCCeEEEEecCHHHHHhhh
Q 024390 179 LAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 179 ~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
.+.+|.=|.|.+|.++..+++
T Consensus 349 aGRFdrEI~l~vP~e~aR~~I 369 (802)
T KOG0733|consen 349 AGRFDREICLGVPSETAREEI 369 (802)
T ss_pred cccccceeeecCCchHHHHHH
Confidence 788999999999999888876
No 172
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.66 E-value=4.2e-05 Score=69.91 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl 112 (268)
+++.|+|+||+|||||++|..|++.++...||.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 456899999999999999999999999999988773
No 173
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.62 E-value=0.00067 Score=60.53 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
..++|.|+||+|||++|+.|++.+|.+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 45889999999999999999999887765
No 174
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.0028 Score=52.58 Aligned_cols=150 Identities=16% Similarity=0.163 Sum_probs=83.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC-ccchhHHHHhhcCCCChhH---------HHHHHHHhccC-----------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP-RISMSSIVRQDLSPRSSLH---------KQIANAVNRGE----------- 135 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~-~is~~dlir~~~~~~~~~g---------~~i~~~l~~G~----------- 135 (268)
++..|+++||+|+||-|+.......+... .+ .++|..+......| .+..+.-..|.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~---~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~ 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRL---HFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLS 80 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCce---EEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCcc
Confidence 57789999999999999999988877432 11 11222221111110 00111111111
Q ss_pred -cccHHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHHH
Q 024390 136 -VVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKL 207 (268)
Q Consensus 136 -~ip~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl 207 (268)
-+|.+ |.+.+. .+..+|..|.-.-..|+.. ...-=.+|++.++++++.+|+.+ .+..|+
T Consensus 81 Ygip~e-----Id~wl~-----~G~vvl~NgSRa~Lp~arr---ry~~Llvv~ita~p~VLaqRL~~RGREs~eeI~aRL 147 (192)
T COG3709 81 YGIPAE-----IDLWLA-----AGDVVLVNGSRAVLPQARR---RYPQLLVVCITASPEVLAQRLAERGRESREEILARL 147 (192)
T ss_pred ccCchh-----HHHHHh-----CCCEEEEeccHhhhHHHHH---hhhcceeEEEecCHHHHHHHHHHhccCCHHHHHHHH
Confidence 02222 222333 2445666664222222222 11223599999999999999943 344444
Q ss_pred HHHHHHchHHHHHHH-hCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 208 EAYAELSKPLEDYYQ-KQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 208 ~~y~~~~~~l~~~y~-~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
..-. .|. ..+-+..||.+...+...+++...|...
T Consensus 148 ~R~a--------~~~~~~~dv~~idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 148 ARAA--------RYTAGPGDVTTIDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred Hhhc--------ccccCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence 3211 122 1346889999999999999999888753
No 175
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.60 E-value=0.00046 Score=69.50 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
....++++|.||+||||+++.|++.++...+++
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~ 246 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQS 246 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCc
Confidence 356799999999999999999999986655544
No 176
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.60 E-value=0.00036 Score=56.18 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=21.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~ 103 (268)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999864
No 177
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.56 E-value=6.3e-05 Score=58.10 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
+..++|.|||||||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4579999999999999999999988654
No 178
>CHL00181 cbbX CbbX; Provisional
Probab=97.56 E-value=0.00026 Score=64.12 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+..++|.|+||+||||+|+.+++.+
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999999999875
No 179
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.55 E-value=0.00029 Score=55.16 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=44.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh--------CCC--ccchhHHHHhhcCCCChhHHHHHHHHhccCcc--cHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL--------EVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVV--SEDIIFG 144 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l--------~~~--~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i--p~~~~~~ 144 (268)
+...++|.|++|+|||++++.+++.+ +.. +++...-- ....+...+.+.+.....- +.+...+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-----TPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-----SHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-----CHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 34569999999999999999999976 332 22222111 1123444454444433222 3344446
Q ss_pred HHHHHHHcCCccCccEEEEcCC
Q 024390 145 LLSKRLEDGYYRGEIGFILDGL 166 (268)
Q Consensus 145 ll~~~l~~~~~~~~~g~IlDGf 166 (268)
.+.+.+... ...-+|||.+
T Consensus 78 ~~~~~l~~~---~~~~lviDe~ 96 (131)
T PF13401_consen 78 LLIDALDRR---RVVLLVIDEA 96 (131)
T ss_dssp HHHHHHHHC---TEEEEEEETT
T ss_pred HHHHHHHhc---CCeEEEEeCh
Confidence 666777664 1246788875
No 180
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.55 E-value=0.00011 Score=63.54 Aligned_cols=111 Identities=18% Similarity=0.160 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH--HhhcCCCC------hhHHH-----HHHHHhccCcccHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV--RQDLSPRS------SLHKQ-----IANAVNRGEVVSEDIIFGL 145 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli--r~~~~~~~------~~g~~-----i~~~l~~G~~ip~~~~~~l 145 (268)
..++|.||+|+|||.+|-.||+++|.+.|+.|.+- .+ +..++ ++... -...+..|. ++.+...+.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~-l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~ 79 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE-LSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHER 79 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG-GTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc-cccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHH
Confidence 46899999999999999999999999999987533 22 21111 11000 112345565 555556777
Q ss_pred HHHHHHcCCccCccEEEEcCCcCCHHHHHHHHh--hc-CC--CeEEEEecCHHHH
Q 024390 146 LSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ--LA-EI--DLVVNFKCADNFI 195 (268)
Q Consensus 146 l~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~--~~-~~--d~vV~Ld~~~e~l 195 (268)
+..++.... ...++|++|-- ..-...|-+ +- .+ -.+..+.++++..
T Consensus 80 Li~~v~~~~--~~~~~IlEGGS--ISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~ 130 (233)
T PF01745_consen 80 LISEVNSYS--AHGGLILEGGS--ISLLNCMAQDPYWSLDFRWHIRRLRLPDEEV 130 (233)
T ss_dssp HHHHHHTTT--TSSEEEEEE----HHHHHHHHH-TTTSSSSEEEEEE-----HHH
T ss_pred HHHHHHhcc--ccCceEEeCch--HHHHHHHHhcccccCCCeEEEEEEECCChHH
Confidence 777888763 48899999852 222233322 11 11 2477778877654
No 181
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.54 E-value=4.4e-05 Score=62.81 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
+|+|+|+||+||||+++.|++. |++++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 5999999999999999999999 88766
No 182
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.53 E-value=7.9e-05 Score=64.84 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~ 117 (268)
|+|.|.|.|||||||+++.+.+..+..-+++++-+++.+
T Consensus 1 miI~i~G~~gsGKstva~~~~~~g~~~~~~~~d~ik~~l 39 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIENYNAVKYQLADPIKEIL 39 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhcCCcEEEehhHHHHHHH
Confidence 579999999999999999997764443399999998875
No 183
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.52 E-value=9e-05 Score=61.22 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~ 117 (268)
..|+|+|.|+||+||||++.++++.+.-.-+.++-++-.++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV 44 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV 44 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee
Confidence 56899999999999999999999987544344444444443
No 184
>PLN02840 tRNA dimethylallyltransferase
Probab=97.49 E-value=0.0001 Score=69.78 Aligned_cols=36 Identities=28% Similarity=0.163 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d 111 (268)
.+++.|+|.||+||||||++..|+++++..+|+.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 345679999999999999999999999988888865
No 185
>PRK12377 putative replication protein; Provisional
Probab=97.45 E-value=0.0025 Score=56.53 Aligned_cols=107 Identities=16% Similarity=0.231 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (268)
..++|.|+||+|||.++..++..+ | +.++++.+++... +.....+.. ...++ +.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l-----------~~~~~~~~~-----~~~~l-~~l~-- 162 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL-----------HESYDNGQS-----GEKFL-QELC-- 162 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH-----------HHHHhccch-----HHHHH-HHhc--
Confidence 458999999999999999999876 2 3456666666542 222222211 11122 2222
Q ss_pred CccCccEEEEcCC---cCCHHHHHHHHhh-----c-CCCeEEEEecCHHHHHhhhhHHHHHHH
Q 024390 154 YYRGEIGFILDGL---PRSRIQAEILDQL-----A-EIDLVVNFKCADNFIVTNRGGSLKEKL 207 (268)
Q Consensus 154 ~~~~~~g~IlDGf---Pr~~~qa~~l~~~-----~-~~d~vV~Ld~~~e~l~~Rl~~~~~~rl 207 (268)
...-+|||.+ +.+..+.+.|..+ . .-..+|-=..+.+.+.+++.+++-.|+
T Consensus 163 ---~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 163 ---KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred ---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHHHHHH
Confidence 3567899987 4444555555433 1 233455556777777666654444444
No 186
>PF13173 AAA_14: AAA domain
Probab=97.45 E-value=0.00098 Score=52.69 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC----CCccchhHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSIV 113 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~----~~~is~~dli 113 (268)
.+.++|.|+.|+||||+++.+++.+. +.+++.++.-
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR 41 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence 35799999999999999999998865 6677765433
No 187
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00045 Score=58.97 Aligned_cols=161 Identities=11% Similarity=0.053 Sum_probs=86.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcC----CC-------------ChhHHHHHHHHhccCcccH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLS----PR-------------SSLHKQIANAVNRGEVVSE 139 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~----~~-------------~~~g~~i~~~l~~G~~ip~ 139 (268)
-.+|-|.|...|||||+|+.|.+.| |...|+-||.+..+.. .+ ..+.+.+...+......|+
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~ 83 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPE 83 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccch
Confidence 3567888999999999999999998 6677887777644321 00 0123344444444333332
Q ss_pred HHHHHHHHH-----HHHcCCc--cCccEEEEcCCcCC--HHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH-------
Q 024390 140 DIIFGLLSK-----RLEDGYY--RGEIGFILDGLPRS--RIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL------- 203 (268)
Q Consensus 140 ~~~~~ll~~-----~l~~~~~--~~~~g~IlDGfPr~--~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~------- 203 (268)
....++.. ...+... ....-+++|||-.. ..|.. ..|..|++..+.+++.+|.+.+.
T Consensus 84 -ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~------~~d~~im~~~~y~~~krRr~~Rt~y~p~~t 156 (225)
T KOG3308|consen 84 -AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD------LFDRIIMLTLDYETCKRRREARTYYPPDDT 156 (225)
T ss_pred -HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh------hhhhheeeeccHHHHHHhhcccccCCCCCC
Confidence 11111111 1111111 13445889998432 12222 35668999999999999984221
Q ss_pred ---HH-HHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390 204 ---KE-KLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 204 ---~~-rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L 247 (268)
.- -.-.|.++..... |.......-+|++.+-+..-..|...+
T Consensus 157 gyfd~~~~P~Y~~~~~~~~--d~~~h~~~flngdvs~e~~~~~v~~~i 202 (225)
T KOG3308|consen 157 GYFDPVVWPHYEKNFEEAR--DRSRHDSLFLNGDVSEEKLDDKVNESI 202 (225)
T ss_pred ccccCccchHHHHHHHHHH--hhcccceeeecccchhhhchhhhhhhh
Confidence 00 0012222211110 111112345677777777777766666
No 188
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.42 E-value=0.00014 Score=68.90 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~ 110 (268)
.+..|+|+||||+|||++|+.||+.++.+++.++
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4467999999999999999999999999888776
No 189
>PHA03136 thymidine kinase; Provisional
Probab=97.41 E-value=0.0065 Score=56.76 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+-.+|.|.|+.|+||||.++.|.+.
T Consensus 35 ~~~rvyieG~~gvGKTT~~~~l~~~ 59 (378)
T PHA03136 35 RLVLLYLDGPFGTGKTTTAKLLMEM 59 (378)
T ss_pred eeEEEEEECCCcCCHHHHHHHHHhc
Confidence 4568999999999999999999883
No 190
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.40 E-value=9e-05 Score=68.85 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
+.+.++|.|||||||||+++.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4567999999999999999999998865
No 191
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.40 E-value=0.00047 Score=61.57 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=25.5
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
+..+.+|.|.|+||+||||.|+.|+..+.
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~ 107 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLS 107 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHh
Confidence 35678999999999999999999988763
No 192
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.38 E-value=0.0019 Score=57.93 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=28.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir 114 (268)
.|.|.|.+||||||+++.|++.++ ..+|+.|+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 378999999999999999998774 35677777665
No 193
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.37 E-value=0.00013 Score=58.17 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=24.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPR 106 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~ 106 (268)
|+|.|+||+|||++++.|++.++.++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 79999999999999999999998655
No 194
>PLN02748 tRNA dimethylallyltransferase
Probab=97.37 E-value=0.00016 Score=69.55 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d 111 (268)
.++..|+|+||+|||||++|..||++++...|+.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 456689999999999999999999999999999974
No 195
>PF05729 NACHT: NACHT domain
Probab=97.36 E-value=0.00026 Score=57.27 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.++|.|+||+||||+++.++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 589999999999999999998763
No 196
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.36 E-value=0.00021 Score=67.73 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~ 110 (268)
.+..|+|+||||+|||++|+.|++.++.+++.++
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 3467999999999999999999999998887775
No 197
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.35 E-value=0.00014 Score=65.78 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=29.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~~d 111 (268)
|+|+||+|||||+++..|++.++..+||.|.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 7999999999999999999999999999976
No 198
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.32 E-value=0.00018 Score=62.76 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
..+++.||||.||||+|+.+|+.+|....
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 46999999999999999999999987653
No 199
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00035 Score=63.75 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
-...|++.||||.|||++|+.||+++.+.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 34579999999999999999999998754
No 200
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.30 E-value=0.016 Score=52.10 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=35.9
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHhCC-----CccchhHHHHhh
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQD 116 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~-----~~is~~dlir~~ 116 (268)
++.+.++..|++.|+-||||||.+++|..++.. -+|+++..+++.
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v 62 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV 62 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence 556678899999999999999999999887632 257777777664
No 201
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.26 E-value=0.0012 Score=59.64 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..++|.|+||+|||++|+.+++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4469999999999999998888765
No 202
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.23 E-value=0.0057 Score=54.17 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=62.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (268)
-++|.|+||+|||+++..++..+ | +.++++.+++... +..+...... ...++ +.+.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l-----------~~~~~~~~~~----~~~~l-~~l~--- 161 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM-----------KDTFSNSETS----EEQLL-NDLS--- 161 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH-----------HHHHhhcccc----HHHHH-HHhc---
Confidence 58999999999999999999987 2 3456676766443 1111111111 11222 2232
Q ss_pred ccCccEEEEcCCcC---CHHHHHHHHhh------cCCCeEEEEecCHHHHHhhhhHHHHHHH
Q 024390 155 YRGEIGFILDGLPR---SRIQAEILDQL------AEIDLVVNFKCADNFIVTNRGGSLKEKL 207 (268)
Q Consensus 155 ~~~~~g~IlDGfPr---~~~qa~~l~~~------~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl 207 (268)
...-+|||.+.. +..+.+.+..+ ..-..+|.=..+.+.+.+++.+++-.|+
T Consensus 162 --~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 162 --NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred --cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhChHHHHHH
Confidence 345688897643 22333344332 1344577677888888877765554444
No 203
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.18 E-value=0.00037 Score=65.98 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
....+|+|+|++||||||+++.|++.+|...+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 44578999999999999999999999998653
No 204
>PRK08116 hypothetical protein; Validated
Probab=97.16 E-value=0.0078 Score=53.96 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=28.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ 115 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~ 115 (268)
-++|.|++|+|||.++..+++.+ + +.+++..+++..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 48999999999999999999875 3 345677676654
No 205
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0063 Score=55.27 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=36.2
Q ss_pred CCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCc--cchhHHHHhhc
Q 024390 68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIVRQDL 117 (268)
Q Consensus 68 ~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~--is~~dlir~~~ 117 (268)
+.+....|-++ |++.||||.|||-+|+.+|-.-|-.+ ||..||+.+.+
T Consensus 158 lFtGkR~Pwrg--iLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 158 LFTGKRKPWRG--ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred hhcCCCCccee--EEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 34433344444 89999999999999999999987655 55568888874
No 206
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.14 E-value=0.00051 Score=55.21 Aligned_cols=29 Identities=21% Similarity=0.104 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
.+..|++.|+.|+||||+++.+++.+|..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45679999999999999999999999864
No 207
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0017 Score=60.86 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
...++-||||+||||+|+.||...+..+.-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 4579999999999999999999998776544
No 208
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.12 E-value=0.0056 Score=54.62 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
-++.|++.||||.|||..|+.||.+.+.+.+.+
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~v 182 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLV 182 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence 356899999999999999999999999887765
No 209
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.11 E-value=0.0004 Score=61.21 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEcCCCCChhHHHHHHHHHhCC
Q 024390 83 FIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 83 I~G~pGSGKST~a~~La~~l~~ 104 (268)
|+||+||||||+|+.+.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999998854
No 210
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.11 E-value=0.00038 Score=63.98 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is 108 (268)
..|+|.|+||+||||+++.||+.+|.+++.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 359999999999999999999999987653
No 211
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0036 Score=61.78 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDL 117 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~ 117 (268)
.++-|++.||||+|||++|+.||..-++.++++ .+++....
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v 509 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV 509 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence 344599999999999999999999887776666 46665554
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.08 E-value=0.00056 Score=53.31 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..++|.|+||+|||++++.+++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999987
No 213
>PRK14974 cell division protein FtsY; Provisional
Probab=97.02 E-value=0.009 Score=55.34 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..|+|+|+||+||||.+..|+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999888765
No 214
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.01 E-value=0.0017 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCC
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
++|+|++|||||++|..++...+-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~ 25 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGG 25 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 789999999999999999987553
No 215
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.00 E-value=0.00066 Score=62.56 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
+.+|+|+|+|||||||+++.|+..+|.+++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 568999999999999999999999998763
No 216
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.023 Score=47.15 Aligned_cols=39 Identities=13% Similarity=-0.054 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHhh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQD 116 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l--~~~~is~~dlir~~ 116 (268)
+...++-|+.||||||+-..+-..+ ++.+|+.|.+..+.
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i 42 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI 42 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc
Confidence 4567899999999999877654433 67788997777664
No 217
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.99 E-value=0.00068 Score=58.72 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=23.7
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
|+.| ++-.++|.|+||||||++|..++.
T Consensus 14 GGip-~gs~~li~G~~GsGKT~l~~q~l~ 41 (226)
T PF06745_consen 14 GGIP-KGSVVLISGPPGSGKTTLALQFLY 41 (226)
T ss_dssp TSEE-TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCC-CCcEEEEEeCCCCCcHHHHHHHHH
Confidence 5566 778899999999999999998653
No 218
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.00078 Score=61.40 Aligned_cols=35 Identities=26% Similarity=0.184 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl 112 (268)
+..|+|+||.+||||-+|-.||+++|.+.||.|.+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 46799999999999999999999999999999864
No 219
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.97 E-value=0.0012 Score=57.83 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=23.9
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
|+.| ++-.++|.|+||||||++|..++-
T Consensus 16 GG~~-~gs~~lI~G~pGsGKT~la~~~l~ 43 (237)
T TIGR03877 16 GGIP-ERNVVLLSGGPGTGKSIFSQQFLW 43 (237)
T ss_pred CCCc-CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5666 788899999999999999987654
No 220
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.97 E-value=0.00079 Score=64.00 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
...|+|.||||+|||++|+.||+.++.+++.+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 45699999999999999999999998876644
No 221
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.94 E-value=0.008 Score=54.05 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+..|+|+|++|+||||.+..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 345678899999999999999999876
No 222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0015 Score=60.31 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=38.5
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHHHhhcCCCCh
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVRQDLSPRSS 122 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is--~~dlir~~~~~~~~ 122 (268)
|-.|.+| |++.||||+|||-+|+.+|.+-+..+|- ..+++++.+-.+..
T Consensus 181 GI~PPKG--VLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaR 231 (406)
T COG1222 181 GIDPPKG--VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGAR 231 (406)
T ss_pred CCCCCCc--eEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchH
Confidence 5555555 8999999999999999999999876654 46888887765543
No 223
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.92 E-value=0.0041 Score=59.60 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++..|+|+|++|+||||.+..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356789999999999999999999876
No 224
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0099 Score=54.39 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d 111 (268)
+-+.|+|+|+.|||||-++--||.+|+...|+.+.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDk 40 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDK 40 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccc
Confidence 45689999999999999999999999998888753
No 225
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.89 E-value=0.00083 Score=63.40 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQ 115 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir~ 115 (268)
+..|+|.||||+|||++|+.+|+.++..++ +..+++..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 345999999999999999999999987654 44555543
No 226
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0098 Score=55.72 Aligned_cols=135 Identities=12% Similarity=0.078 Sum_probs=72.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
-|++.||||+|||-+|+.+|.+-|..++++ .++..+. +|+ .+-++++|-+....+ .
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw----------------RGe---SEKlvRlLFemARfy---A 304 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW----------------RGE---SEKLVRLLFEMARFY---A 304 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh----------------ccc---hHHHHHHHHHHHHHh---C
Confidence 389999999999999999999998766554 3444443 121 233344443333222 1
Q ss_pred ccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHH
Q 024390 158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPV 237 (268)
Q Consensus 158 ~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~e 237 (268)
...+.||- .+.|..-..- -++.+.-+|+.. .+..+.+.+..-+.....+.++-+++=|+
T Consensus 305 PStIFiDE-------IDslcs~RG~-------s~EHEaSRRvKs-------ELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 305 PSTIFIDE-------IDSLCSQRGG-------SSEHEASRRVKS-------ELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred Cceeehhh-------HHHHHhcCCC-------ccchhHHHHHHH-------HHHHHhhccccccccceeEEEEeccCCCc
Confidence 22233331 1111110000 122233333311 22233333333222222355666677799
Q ss_pred HHHHHHHHHHHhhcccccCC
Q 024390 238 ETWQGLLTALHLQHINAAYS 257 (268)
Q Consensus 238 ev~~~I~~~L~~~~~~~~~~ 257 (268)
++=+.++..|.......+++
T Consensus 364 diDEAlrRRlEKRIyIPLP~ 383 (491)
T KOG0738|consen 364 DIDEALRRRLEKRIYIPLPD 383 (491)
T ss_pred chHHHHHHHHhhheeeeCCC
Confidence 99999999999888888777
No 227
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.89 E-value=0.00084 Score=56.05 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
+|+|.|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 228
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.0047 Score=50.70 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=84.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHH--HHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF--GLLSKR 149 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~--~ll~~~ 149 (268)
.++..|.|.|..||||||+|-.|.+.+. ..++=-||-+|--++.. ++-+.++-. +.+. .-+.+.
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~D--L~F~a~dR~--------ENIRRigeVaKL 98 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKD--LGFKAEDRN--------ENIRRIGEVAKL 98 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccc--cCcchhhhh--------hhHHHHHHHHHH
Confidence 4788999999999999999999998763 22333345555544321 111111000 1111 111111
Q ss_pred HHcCCccCccEEE-----EcCCcCCHHHHHHHHhhcCCC-eEEEEecCHHHHHhhhhHHHHHHH-----HHHHHHchHHH
Q 024390 150 LEDGYYRGEIGFI-----LDGLPRSRIQAEILDQLAEID-LVVNFKCADNFIVTNRGGSLKEKL-----EAYAELSKPLE 218 (268)
Q Consensus 150 l~~~~~~~~~g~I-----lDGfPr~~~qa~~l~~~~~~d-~vV~Ld~~~e~l~~Rl~~~~~~rl-----~~y~~~~~~l~ 218 (268)
.. ..|+| |.-+-....++..|-. .-+ +-||+++|.+++..|-+.-+-++- +.|-.. -
T Consensus 99 FA------Dag~iciaSlISPYR~dRdacRel~~--~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGI----d 166 (207)
T KOG0635|consen 99 FA------DAGVICIASLISPYRKDRDACRELLP--EGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGI----D 166 (207)
T ss_pred Hh------ccceeeeehhcCchhccHHHHHHhcc--CCCeEEEEecCcHHHhhccCchhHHHHHhcccccccccC----C
Confidence 11 22222 2223334455554432 224 479999999999999865442222 222222 2
Q ss_pred HHHHhC-C--cEEEEeCCCCHHHHHHHHHHHHHhhccc
Q 024390 219 DYYQKQ-K--KLLEFQVGSAPVETWQGLLTALHLQHIN 253 (268)
Q Consensus 219 ~~y~~~-~--~l~~Ida~~s~eev~~~I~~~L~~~~~~ 253 (268)
+-|+.+ + .++.-+...++++..+.|.++|..+++.
T Consensus 167 dPYEaP~~cEi~l~~~~~~sp~~mae~iv~YL~~kg~l 204 (207)
T KOG0635|consen 167 DPYEAPLNCEIVLKSHESSSPEEMAEIIVSYLDNKGYL 204 (207)
T ss_pred CcccCCCCcEEEEccCCCCCHHHHHHHHHHHHhhcChh
Confidence 224332 2 2222234467888999999999887653
No 229
>PF13245 AAA_19: Part of AAA domain
Probab=96.87 E-value=0.0012 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=17.3
Q ss_pred eEEEEEcCCCCChh-HHHHHHHHHh
Q 024390 79 VHWAFIGSPRAKKH-VYAEMLSKLL 102 (268)
Q Consensus 79 ~~IvI~G~pGSGKS-T~a~~La~~l 102 (268)
..++|.|+|||||| |+++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35777999999999 5555555543
No 230
>PLN02796 D-glycerate 3-kinase
Probab=96.87 E-value=0.00096 Score=61.77 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV 113 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dli 113 (268)
.++.+|.|.|++||||||+++.|+..+. ...|++++..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 3568899999999999999999999874 3456776655
No 231
>PRK04328 hypothetical protein; Provisional
Probab=96.86 E-value=0.0015 Score=57.79 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=24.0
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++.| ++-.++|.|+||+|||++|..++..
T Consensus 18 GGip-~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 18 GGIP-ERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCCc-CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4555 6788999999999999999886543
No 232
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.82 E-value=0.001 Score=64.53 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
++-|++.||||+|||.+|+.+|..+|.+.+.+
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34589999999999999999999999876554
No 233
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.82 E-value=0.0011 Score=61.89 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDL 117 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~ 117 (268)
.+..+.|.||||+|||.+|+.+|+.+|+. .+|.++|+....
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 45678999999999999999999999876 456667775543
No 234
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00069 Score=68.21 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHh
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQ 115 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~~--dlir~ 115 (268)
++|.||||+|||-+|+.+|.+-|++++++. +.+.-
T Consensus 347 vLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 347 VLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred eEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 899999999999999999999999998773 55443
No 235
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00095 Score=66.43 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC--CccchhH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSS 111 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~--~~is~~d 111 (268)
.+++++|+.||||.|||++++.+|+.+|- +.+|+|-
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG 385 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG 385 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence 57789999999999999999999999864 5566654
No 236
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.80 E-value=0.0012 Score=61.56 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+.-++|.||||+|||++++.+++.++..++.+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 34599999999999999999999998765443
No 237
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.80 E-value=0.021 Score=47.32 Aligned_cols=163 Identities=14% Similarity=0.130 Sum_probs=88.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh-HHHHhhcCCCCh-hHHH-HH-H-HHhccCc-cc---H---HHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVRQDLSPRSS-LHKQ-IA-N-AVNRGEV-VS---E---DIIFG 144 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~-dlir~~~~~~~~-~g~~-i~-~-~l~~G~~-ip---~---~~~~~ 144 (268)
.+.+|++-|.+-+|||++|..+.+.+.-+...++ |++.+.+++... .+.- .. . ....|+. ++ . +....
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~~ 101 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELAMH 101 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHHHH
Confidence 6778999999999999999999998866655554 667666653210 0000 00 0 0111111 10 1 11111
Q ss_pred HHHHHHHcCCccCccEEEEcCCcCCHHH-HHHHHhhcCCC-eEEEEecCHHHHHhhhhHHHHHHHH-----HHHHHchHH
Q 024390 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQ-AEILDQLAEID-LVVNFKCADNFIVTNRGGSLKEKLE-----AYAELSKPL 217 (268)
Q Consensus 145 ll~~~l~~~~~~~~~g~IlDGfPr~~~q-a~~l~~~~~~d-~vV~Ld~~~e~l~~Rl~~~~~~rl~-----~y~~~~~~l 217 (268)
-....|... ...+..+|.|.+-.+..+ .+.+..+..++ .+|-..||.|++.+|-..+- .|.- .|+.-..+
T Consensus 102 ~~r~ai~a~-ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~-dR~pG~~rg~~r~vHa~- 178 (205)
T COG3896 102 SRRRAIRAY-ADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRG-DRHPGWNRGSARAVHAD- 178 (205)
T ss_pred HHHHHHHHH-hccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcC-CcCcchhhhhHHHhcCC-
Confidence 111222221 124667888887666554 34455444444 58889999999999862210 1111 11111111
Q ss_pred HHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHH
Q 024390 218 EDYYQKQKKLLEFQVG-SAPVETWQGLLTALH 248 (268)
Q Consensus 218 ~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~ 248 (268)
...-+.+|++ .+|.|....|.+.++
T Consensus 179 ------~~YDlevDTS~~tp~EcAr~i~~r~q 204 (205)
T COG3896 179 ------AEYDLEVDTSATTPHECAREIHERYQ 204 (205)
T ss_pred ------cceeeeecccCCCHHHHHHHHHHHhc
Confidence 1123578876 569999888876553
No 238
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.80 E-value=0.001 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++|+|+|+.||||||+++.|...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 57999999999999999999764
No 239
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.77 E-value=0.0013 Score=62.53 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
+..|+|.||||+|||++|+.||+.++.+++
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~ 145 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFA 145 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence 457999999999999999999999987764
No 240
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.77 E-value=0.0013 Score=62.36 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+.-|+|.||||+|||++++.+|...+..++.+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 45599999999999999999999998776544
No 241
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.75 E-value=0.016 Score=55.37 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..+++.|++||||||.+..||..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 242
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.74 E-value=0.0015 Score=59.00 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
...++|.||||+|||++++.+++.++..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458999999999999999999998764
No 243
>PRK09087 hypothetical protein; Validated
Probab=96.74 E-value=0.0014 Score=57.32 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli 113 (268)
+.++|.|++|||||++++.+++..+..+++.+++.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~ 79 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG 79 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence 45899999999999999999999998888886433
No 244
>PHA02244 ATPase-like protein
Probab=96.74 E-value=0.0012 Score=61.78 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli 113 (268)
..|+|.||||+|||++++.|+..++.+++.+..++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 34899999999999999999999999888776443
No 245
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.72 E-value=0.025 Score=52.30 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (268)
..++|.|++|+|||.++..+|+.+ .+.++++.+++..... ....... +. ... .+.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~----------~~~~~~~----~~-~~~-~~~l~-- 245 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE----------IRFNNDK----EL-EEV-YDLLI-- 245 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH----------HHhccch----hH-HHH-HHHhc--
Confidence 569999999999999999999875 3456777777655310 0011110 00 011 12222
Q ss_pred CccCccEEEEcCCc---CCHHHHHHHHhh------cCCCeEEEEecCHHHHHhhhhHHHHHHH
Q 024390 154 YYRGEIGFILDGLP---RSRIQAEILDQL------AEIDLVVNFKCADNFIVTNRGGSLKEKL 207 (268)
Q Consensus 154 ~~~~~~g~IlDGfP---r~~~qa~~l~~~------~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl 207 (268)
...-+|||.+- .+......|..+ ..-..+|.=+.+++.+.+++.+++..|+
T Consensus 246 ---~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 246 ---NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred ---cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 24568899762 232222223222 1334677778888888777755555544
No 246
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.72 E-value=0.0014 Score=63.65 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=51.0
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchh----HHHHhhcCCCChhHHHHHHHHhccCcc-----
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS----SIVRQDLSPRSSLHKQIANAVNRGEVV----- 137 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~----dlir~~~~~~~~~g~~i~~~l~~G~~i----- 137 (268)
|+.| ++-.++|.|+||+||||++..++... | ..+++.. ++++... .+|-.+.+++.+|.+.
T Consensus 258 GG~~-~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~----~lg~~~~~~~~~g~l~~~~~~ 332 (484)
T TIGR02655 258 GGFF-KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAY----SWGIDFEEMEQQGLLKIICAY 332 (484)
T ss_pred CCcc-CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHH----HcCCChHHHhhCCcEEEEEcc
Confidence 3344 78889999999999999999987754 3 4556654 3444432 2232344455555321
Q ss_pred -----cHHHHHHHHHHHHHcCCccCccEEEEcCC
Q 024390 138 -----SEDIIFGLLSKRLEDGYYRGEIGFILDGL 166 (268)
Q Consensus 138 -----p~~~~~~ll~~~l~~~~~~~~~g~IlDGf 166 (268)
+++ ....+.+.+.+. ..+-+|||++
T Consensus 333 p~~~~~~~-~~~~i~~~i~~~---~~~~vvIDsi 362 (484)
T TIGR02655 333 PESAGLED-HLQIIKSEIADF---KPARIAIDSL 362 (484)
T ss_pred cccCChHH-HHHHHHHHHHHc---CCCEEEEcCH
Confidence 133 334444555543 3567888875
No 247
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.71 E-value=0.0014 Score=56.41 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV 113 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dli 113 (268)
.+..++|.|++|+|||++++.+++... +.+++..++.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 445699999999999999999998652 3455554443
No 248
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.70 E-value=0.00086 Score=53.53 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=20.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
++|.|+||.||||+++.||+..|..+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 789999999999999999999987543
No 249
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.70 E-value=0.0017 Score=49.93 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
+|+|+|++||||||+.+.|+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 250
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.68 E-value=0.0015 Score=63.46 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
.-++|.||||+|||++++.||...+.+++.+
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 3499999999999999999999998876554
No 251
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.67 E-value=0.0013 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~ 103 (268)
|.|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988653
No 252
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.67 E-value=0.0022 Score=50.79 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
.+..|++.|+-||||||+++.+++.+|..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 56789999999999999999999999864
No 253
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.65 E-value=0.02 Score=54.66 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..|.|+|++||||||.+..||..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 254
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.64 E-value=0.0028 Score=55.30 Aligned_cols=29 Identities=14% Similarity=-0.034 Sum_probs=24.4
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++.| ++-.++|.|+||||||+++..++..
T Consensus 20 gG~~-~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 20 GGIP-FPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CCCc-CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4556 7788999999999999999998653
No 255
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.11 Score=44.48 Aligned_cols=20 Identities=5% Similarity=0.140 Sum_probs=18.8
Q ss_pred cCCCeEEEEecCHHHHHhhh
Q 024390 180 AEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 180 ~~~d~vV~Ld~~~e~l~~Rl 199 (268)
..+|.+|||.+++|++.+|+
T Consensus 152 v~~dgiIYLrasPetc~~Ri 171 (244)
T KOG4235|consen 152 VSLDGIIYLRASPETCYKRI 171 (244)
T ss_pred cccceEEEeecChHHHHHHH
Confidence 47899999999999999999
No 256
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.61 E-value=0.0021 Score=55.00 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
|..|+|+||+|+||||.+.+||.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 45799999999999999999998873
No 257
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.60 E-value=0.002 Score=61.75 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+..++|.||||+|||++++.+|..++..++.+
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 34588999999999999999999988765543
No 258
>PRK06620 hypothetical protein; Validated
Probab=96.60 E-value=0.0016 Score=56.45 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is 108 (268)
..++|.||||||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 358999999999999999999988765544
No 259
>PRK04195 replication factor C large subunit; Provisional
Probab=96.58 E-value=0.0018 Score=62.70 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
...++|.||||+||||+++.|++.+++.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45699999999999999999999999876654
No 260
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.58 E-value=0.0026 Score=55.15 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV 113 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dli 113 (268)
..++|.|++|+|||++++.++... .+.+++..++.
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 458999999999999999999876 55666665543
No 261
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.0087 Score=56.50 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
++..|+++||.|+||||.+..||..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998763
No 262
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.57 E-value=0.0023 Score=58.26 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d 111 (268)
++.|+|+||.|||||.+|-.||++ +...||.|.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS 36 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS 36 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence 347999999999999999999999 458888874
No 263
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0018 Score=64.58 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSI 112 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~--~~~is~~dl 112 (268)
..|+++||.||||.|||++++.+|..+| |..+|+|-+
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 5789999999999999999999999996 456676644
No 264
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.56 E-value=0.0038 Score=54.64 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=21.2
Q ss_pred CccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 73 RERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 73 ~~p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
+.| ++-.++|.|+||+||||+|..++.
T Consensus 20 gi~-~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 20 GIP-AGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCC-CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344 566899999999999999865543
No 265
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.56 E-value=0.003 Score=51.68 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh-HHHHhh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVRQD 116 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~-dlir~~ 116 (268)
+|.+++++.|.||+||||+...|+..=-..+...+ ++++++
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~~Gfatvee~~r~ii~~e 48 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALARAGFATVEEAGRDIIALE 48 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHcCceeeccchhhHHHHH
Confidence 45678999999999999999999975322332222 455443
No 266
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.56 E-value=0.05 Score=56.15 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=23.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
-++|.|++|+||||+++.|++.+++.
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 38999999999999999999999864
No 267
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0021 Score=58.66 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
...-+|+++||.|||||-+|+-||+.+++|+-
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFa 126 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFA 126 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 34557999999999999999999999999864
No 268
>PRK06526 transposase; Provisional
Probab=96.55 E-value=0.0028 Score=56.47 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ 115 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~ 115 (268)
.+..++|.||||+|||+++..|+... | +.++++.+++.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 45679999999999999999997754 2 334555555544
No 269
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.54 E-value=0.0023 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+++.|+|||||||++..++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998875
No 270
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.53 E-value=0.0021 Score=61.00 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV 113 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dli 113 (268)
.++.+|.|.|+.||||||+++.|...+. ...|++|+..
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4668899999999999999999987663 4567777765
No 271
>PRK13695 putative NTPase; Provisional
Probab=96.53 E-value=0.0023 Score=53.16 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l 102 (268)
|+|+|.|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999987765
No 272
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.52 E-value=0.003 Score=53.88 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=29.5
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~ 110 (268)
|+.| ++..+.|.|+||||||++|..++... ...+|++.
T Consensus 7 GGi~-~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 7 GGVE-RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCC-CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4455 78899999999999999999988643 24566664
No 273
>PRK10867 signal recognition particle protein; Provisional
Probab=96.52 E-value=0.024 Score=54.24 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..|+++|++||||||.+..||..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999888888754
No 274
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.52 E-value=0.0023 Score=56.53 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
...++|.|++|+||||+++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999999999876
No 275
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.51 E-value=0.0035 Score=60.85 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=23.6
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLS 99 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La 99 (268)
|+.| ++..++|.|+|||||||+|..++
T Consensus 16 GGlp-~g~~~Li~G~pGsGKT~la~qfl 42 (484)
T TIGR02655 16 GGLP-IGRSTLVSGTSGTGKTLFSIQFL 42 (484)
T ss_pred CCCC-CCeEEEEEcCCCCCHHHHHHHHH
Confidence 5566 78889999999999999999874
No 276
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.51 E-value=0.0025 Score=58.53 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~ 106 (268)
..++|.||||+|||++++.+|+.++...
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 3589999999999999999999998754
No 277
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.51 E-value=0.0024 Score=60.69 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
..++|.||||+||||+++.|++..+..++.+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4688999999999999999999887665543
No 278
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.49 E-value=0.0027 Score=62.08 Aligned_cols=30 Identities=17% Similarity=0.095 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
..++++.|||||||||..+.||+.+|+.++
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 347899999999999999999999998654
No 279
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.49 E-value=0.0024 Score=55.36 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+|-.++|+||+||||||+.+-|..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4677899999999999999998864
No 280
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.49 E-value=0.0014 Score=57.28 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l 102 (268)
-+|+|||||||||.|.-..+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 5789999999999998877755
No 281
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.47 E-value=0.062 Score=54.71 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
.++|.|++|+||||+++.|++.+++.
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 47899999999999999999999864
No 282
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.43 E-value=0.0024 Score=62.82 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+++++++.||||+||||+++.|++.+
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHH
Confidence 56789999999999999999999865
No 283
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.43 E-value=0.0043 Score=49.36 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=26.3
Q ss_pred ccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.|.++..+.+-|++|+||+.+++.||+.+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 56788899999999999999999999973
No 284
>PRK06893 DNA replication initiation factor; Validated
Probab=96.42 E-value=0.0031 Score=55.10 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~ 110 (268)
+.++|.|+||+|||++++.++..+ +..++++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 468999999999999999999875 45566553
No 285
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.42 E-value=0.0026 Score=52.51 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=18.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..++|.|++|+|||++.+.+.+.+
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999887765
No 286
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.42 E-value=0.0033 Score=52.77 Aligned_cols=27 Identities=15% Similarity=-0.108 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
+++.+.|+|++||||||+++.|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 556899999999999999999998774
No 287
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.42 E-value=0.0036 Score=52.67 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQD 116 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~ 116 (268)
++..++|.|+||+|||.+|..++..+ .+.++++.+++.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 45679999999999999999998753 34677888877664
No 288
>PRK09183 transposase/IS protein; Provisional
Probab=96.39 E-value=0.0035 Score=55.92 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIV 113 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dli 113 (268)
++..++|.||||+|||+++..|+... | +.+++..+++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 45679999999999999999997653 3 2344554544
No 289
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.38 E-value=0.0027 Score=50.83 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l 102 (268)
++|.|+||+||||++..++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998875
No 290
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.0031 Score=56.79 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=27.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCc-cchhHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIV 113 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~-is~~dli 113 (268)
.+++.||||-||||+|..+|..+|... +..|..+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l 88 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc
Confidence 499999999999999999999998753 3334444
No 291
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.37 E-value=0.0026 Score=60.44 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~ 103 (268)
|+|.|+||+||||.|+.||+.|.
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHHH
Confidence 89999999999999999999884
No 292
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.37 E-value=0.0031 Score=50.24 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+|+++|++||||||+...|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998754
No 293
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.37 E-value=0.0026 Score=58.86 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=39.3
Q ss_pred ccCCcCCCcccccccccCCcchHhhhccccccCCCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 35 AAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..++|-|++. .-.|++.+.|...+.+... . ..+..++|.||||+|||++++.+.+.+
T Consensus 7 ~l~~~~~p~~l---~gRe~e~~~l~~~l~~~~~--~-----~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 7 LLEPDYVPDRI---VHRDEQIEELAKALRPILR--G-----SRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred hCCCCCCCCCC---CCcHHHHHHHHHHHHHHHc--C-----CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45677777632 2346677777665543221 1 234569999999999999999998764
No 294
>CHL00176 ftsH cell division protein; Validated
Probab=96.37 E-value=0.0035 Score=62.82 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+.-++|.||||+|||++|+.+|...+.+++.+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 34599999999999999999999998876654
No 295
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0033 Score=57.88 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
.+++|+++||.|.|||-+|++||+.-|.|+|.+
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 567899999999999999999999988887654
No 296
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.36 E-value=0.0033 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~ 100 (268)
+|+|+|.||+||||+.+.|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 297
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.36 E-value=0.0031 Score=68.94 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=30.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVR 114 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is--~~dlir 114 (268)
-|+++||||+|||.+|+.||...+++.|+ ..+++.
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 49999999999999999999999987654 457764
No 298
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.35 E-value=0.007 Score=53.85 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=46.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH--hCC-----CccchhHHHHhhcCCCChhHHHHHHHHhcc-----CcccHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL--LEV-----PRISMSSIVRQDLSPRSSLHKQIANAVNRG-----EVVSEDIIFG 144 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~--l~~-----~~is~~dlir~~~~~~~~~g~~i~~~l~~G-----~~ip~~~~~~ 144 (268)
....|+|.|++|+||||+|+.+++. ..- .+++.+.- .....+...+...+... .....+....
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLGEPDSSISDPKDIEELQD 92 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----cccccccccccccccccccccccccccccccc
Confidence 4567999999999999999999977 221 12222110 01112333344444333 1123444566
Q ss_pred HHHHHHHcCCccCccEEEEcCCcC
Q 024390 145 LLSKRLEDGYYRGEIGFILDGLPR 168 (268)
Q Consensus 145 ll~~~l~~~~~~~~~g~IlDGfPr 168 (268)
.+.+.+.. ...-+|+|+...
T Consensus 93 ~l~~~L~~----~~~LlVlDdv~~ 112 (287)
T PF00931_consen 93 QLRELLKD----KRCLLVLDDVWD 112 (287)
T ss_dssp HHHHHHCC----TSEEEEEEEE-S
T ss_pred cchhhhcc----ccceeeeeeecc
Confidence 66666664 245678898743
No 299
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.35 E-value=0.0045 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
..++++||+|+|||.+|+.|++.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999884
No 300
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.078 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=23.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
-++|.|++|+||||+++.|++.+++
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4799999999999999999999987
No 301
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.34 E-value=0.004 Score=57.28 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+..|.|+||+||||||.+..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356789999999999999999999876
No 302
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.34 E-value=0.003 Score=55.38 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSS 111 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~d 111 (268)
..++|.||+|+|||++++.+++... +.+++.++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3689999999999999999998654 45666644
No 303
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.33 E-value=0.0039 Score=53.38 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
+.+|.|+|++||||||+.+.+...+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35799999999999999999988753
No 304
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.33 E-value=0.0035 Score=53.52 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.|+|.||+||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999887764
No 305
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=96.32 E-value=0.32 Score=42.71 Aligned_cols=164 Identities=8% Similarity=0.034 Sum_probs=82.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH---HhhcCCCChhHHHHHHHHhccCc--ccHHHHHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV---RQDLSPRSSLHKQIANAVNRGEV--VSEDIIFGLLSKRLE 151 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli---r~~~~~~~~~g~~i~~~l~~G~~--ip~~~~~~ll~~~l~ 151 (268)
.+..|+|.|..||||+...+.|.+.++-..+.+-.+- .++. ...-++..-+..=..|+. .....-...+..++.
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~-~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv~rv~ 108 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRER-TQWYFQRYVQHLPAAGEIVLFDRSWYNRAGVERVM 108 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH-cChHHHHHHHhCCCCCeEEEEeCchhhhHHHHHhc
Confidence 5789999999999999999999999865544431111 0000 011112111111122322 112222233333333
Q ss_pred cCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH----------------HHHHHHHHH
Q 024390 152 DGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS----------------LKEKLEAYA 211 (268)
Q Consensus 152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~----------------~~~rl~~y~ 211 (268)
.. + .. ..+.+...+...|++. +..-+-+||+++.++-.+|+.++ ..++.+.|.
T Consensus 109 ~~-~-~~-----~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~yd~y~ 181 (230)
T TIGR03707 109 GF-C-TD-----EEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPMDLASLDRWDDYS 181 (230)
T ss_pred CC-C-CH-----HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHHH
Confidence 21 0 00 0011122344455543 23346899999999999999332 233445555
Q ss_pred HHchHHHHHHHh-CCcEEEEeCCCCHHH---HHHHHHHHHH
Q 024390 212 ELSKPLEDYYQK-QKKLLEFQVGSAPVE---TWQGLLTALH 248 (268)
Q Consensus 212 ~~~~~l~~~y~~-~~~l~~Ida~~s~ee---v~~~I~~~L~ 248 (268)
+....++..=+. ...+++|+++..--. |.+-|.+.|.
T Consensus 182 ~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~i~~~l~ 222 (230)
T TIGR03707 182 RAKDEMFARTDTPEAPWTVVRSDDKKRARLNAIRHILSRLD 222 (230)
T ss_pred HHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHhCC
Confidence 544444332221 235899998754332 4444444443
No 306
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.32 E-value=0.0042 Score=55.37 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=29.0
Q ss_pred CCCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccch
Q 024390 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISM 109 (268)
Q Consensus 71 ~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~ 109 (268)
.|+.| ++..++|.|+||+|||++|..++... ...++++
T Consensus 30 ~GGip-~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 30 LGGIP-AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCCeE-CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 35566 78889999999999999999986642 3345665
No 307
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0027 Score=62.35 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=31.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhc
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDL 117 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~ 117 (268)
=|+++||||||||-+|+.+|.+-|..+|++ .+|+-...
T Consensus 547 GvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYV 586 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYV 586 (802)
T ss_pred ceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence 389999999999999999999988877776 36765543
No 308
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.31 E-value=0.0048 Score=53.03 Aligned_cols=30 Identities=27% Similarity=0.226 Sum_probs=25.5
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++.| ++..+.|.|+|||||||+|..++...
T Consensus 14 GGi~-~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 14 GGVE-RGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCcc-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455 77889999999999999999998764
No 309
>PLN03025 replication factor C subunit; Provisional
Probab=96.30 E-value=0.0038 Score=57.20 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
+.++|.||||+||||+++.+|+.+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999873
No 310
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.30 E-value=0.004 Score=50.36 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++|.|+|+.+|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998876
No 311
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.29 E-value=0.0028 Score=52.58 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=27.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC-CCccchhHH
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLE-VPRISMSSI 112 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~-~~~is~~dl 112 (268)
|+=++.+||||||+|..|++.|| +.||--|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 45578999999999999999999 999877665
No 312
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.28 E-value=0.0038 Score=52.61 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.+..++|+|++||||||+.+.|...+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 466799999999999999999987653
No 313
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.015 Score=58.17 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHhhcC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLS 118 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~--dlir~~~~ 118 (268)
.-|++.||||+|||-++..+|...++.+||+. +++.+.+.
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 34999999999999999999999999998884 77777653
No 314
>PRK04296 thymidine kinase; Provisional
Probab=96.27 E-value=0.0042 Score=52.70 Aligned_cols=25 Identities=8% Similarity=-0.193 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..+++.|+||+||||.+..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999998876
No 315
>PRK06921 hypothetical protein; Provisional
Probab=96.25 E-value=0.095 Score=46.95 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh----CC--CccchhHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL----EV--PRISMSSIVRQ 115 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l----~~--~~is~~dlir~ 115 (268)
+..++|.|+||+|||.++..+++.+ |. .+++..+++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 4569999999999999999998864 22 35555555443
No 316
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.25 E-value=0.0046 Score=47.83 Aligned_cols=23 Identities=22% Similarity=0.030 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLS 99 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La 99 (268)
.+..++|.|++||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 46779999999999999999987
No 317
>PRK08181 transposase; Validated
Probab=96.25 E-value=0.0043 Score=55.73 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHhh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD 116 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~~ 116 (268)
.+..++|.||||+|||.++..++... | +.++++.+++.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 45579999999999999999998643 3 5567777777654
No 318
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.24 E-value=0.0044 Score=61.98 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
..++.+++||||.||||+|..+|+.-|+.++.+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 345689999999999999999999999987765
No 319
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.24 E-value=0.0038 Score=64.00 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
+++.+++.||||+|||++|+.||+.++..++
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 4557999999999999999999999976654
No 320
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.23 E-value=0.004 Score=50.91 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|++||||||+.+.|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4578999999999999999999764
No 321
>PRK13768 GTPase; Provisional
Probab=96.22 E-value=0.0046 Score=54.92 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++.++|.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 4679999999999999999998776
No 322
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.21 E-value=0.0038 Score=60.84 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
..++|.||||+|||++++.+++.++..
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhhccc
Confidence 359999999999999999999998654
No 323
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.21 E-value=0.0038 Score=57.79 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=32.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC----CCccchhHHHHhhc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSIVRQDL 117 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~----~~~is~~dlir~~~ 117 (268)
.|.-|+|.||||+|||.+|-.+|+.+| |+-+|.++++..+.
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~ 108 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEV 108 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecc
Confidence 456799999999999999999999997 34455566665554
No 324
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.17 E-value=0.0045 Score=63.10 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=29.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ 115 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~ 115 (268)
-|+|.||||+|||++|+.||...+..++++ .+++..
T Consensus 489 giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 489999999999999999999998876654 455544
No 325
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.17 E-value=0.0049 Score=56.24 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.++|.||||+||||+++.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999999874
No 326
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.17 E-value=0.006 Score=59.49 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=27.8
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccch
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISM 109 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~ 109 (268)
++.| ++-.++|.|+||+|||+++..++... ++.++++
T Consensus 268 GG~~-~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~ 309 (509)
T PRK09302 268 GGFF-RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAF 309 (509)
T ss_pred CCCC-CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4455 67789999999999999999887543 3455555
No 327
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0038 Score=57.82 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDL 117 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~ 117 (268)
+-|++.||||+|||-+|+++|++-|..+|++ +.+..+++
T Consensus 128 kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 128 KGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred ccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 4499999999999999999999998876655 45555543
No 328
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.0056 Score=59.27 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
..++|.||||+||||+|+.+|+.++..
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 348999999999999999999998763
No 329
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.14 E-value=0.0039 Score=53.68 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l 102 (268)
-.++|.|+||+|||++|+++...+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCeEEECCCCCCHHHHHHHHHHhC
Confidence 369999999999999999999865
No 330
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.0048 Score=57.67 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
-++|.||||+||||+|+.+++.+++.
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 47999999999999999999998753
No 331
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.14 E-value=0.0041 Score=49.14 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56789999999999999999998754
No 332
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0045 Score=60.04 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=29.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQD 116 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~ 116 (268)
.+++.||||+|||.+|+.+|...+.++++. .+++-+.
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~ 316 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKW 316 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccc
Confidence 699999999999999999999777666554 4555444
No 333
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.09 E-value=0.0053 Score=49.64 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~ 100 (268)
+|+|+|+||+||||+.+++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 334
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.038 Score=53.80 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+=|++.||||.|||-+|+.+|-+-|++++.+
T Consensus 338 KGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred CceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 3499999999999999999999999998765
No 335
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.08 E-value=0.007 Score=55.07 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..|.|.|+|||||||++..|+..+
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999988865
No 336
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.004 Score=59.09 Aligned_cols=29 Identities=14% Similarity=0.356 Sum_probs=26.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
.++.||||+||||+..++|..+++...++
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 79999999999999999999999876655
No 337
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.07 E-value=0.0046 Score=57.19 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli 113 (268)
..|-.++|.||+||||||+-+.|| |+.-++.|++.
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~I~ 61 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGEIL 61 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEE
Confidence 466789999999999999999999 55555555543
No 338
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.06 E-value=0.0053 Score=57.28 Aligned_cols=41 Identities=32% Similarity=0.383 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC--CC--ccchhHHHHhhc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE--VP--RISMSSIVRQDL 117 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~--~~--~is~~dlir~~~ 117 (268)
-+.-|+|.||||+|||.+|-.+|+.+| .| .++..++...++
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~ 93 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEV 93 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeeccc
Confidence 467799999999999999999999997 34 455556665543
No 339
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.05 E-value=0.0065 Score=56.18 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++.+|.|.|+|||||||++..|...+
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999987766
No 340
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.04 E-value=0.006 Score=48.80 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+|+|+|.||+||||+..++...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
No 341
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.04 E-value=0.0051 Score=58.93 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.+..|++.|+||+|||++|+.|+..++
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 356799999999999999999999875
No 342
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.04 E-value=0.0052 Score=56.51 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~ 106 (268)
.+..+++.|+||+|||++++.+|+.++.++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 344599999999999999999999998654
No 343
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=96.03 E-value=0.29 Score=47.63 Aligned_cols=166 Identities=13% Similarity=0.080 Sum_probs=81.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH---HhhcCCCChhHHHHHHHHhccCcc--cHHHHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV---RQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLLSKRL 150 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli---r~~~~~~~~~g~~i~~~l~~G~~i--p~~~~~~ll~~~l 150 (268)
..+..|+|.|..||||+++.+.|.+.++-..+.+-.+- .++ ....-++..-+..=..|+.. ....-..++..++
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE-~~~~flwRfw~~lP~~G~I~IFdRSWY~~vlverv 116 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEE-RERPPMWRFWRRLPPKGKIGIFFGSWYTRPLIERL 116 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHH-hcCcHHHHHHHhCCCCCeEEEEcCcccchhhHHHh
Confidence 46789999999999999999999998854433321100 000 00111122111111223221 1112222222222
Q ss_pred HcCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH----------------HHHHHHHH
Q 024390 151 EDGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS----------------LKEKLEAY 210 (268)
Q Consensus 151 ~~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~----------------~~~rl~~y 210 (268)
... + .. +-+.+...+...|++. +..-+-+||+++.++-.+|+.++ ..++.+.|
T Consensus 117 ~g~-~-~~-----~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~s~~D~~~r~~wd~Y 189 (493)
T TIGR03708 117 EGR-I-DE-----AKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRWRVTPEDWKQLKVYDRY 189 (493)
T ss_pred cCC-C-CH-----HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCCCHHHHHHHHhHHHH
Confidence 211 0 00 0011112234445543 23346899999999999999332 23445566
Q ss_pred HHHchHHHHHHHh-CCcEEEEeCCCCH---HHHHHHHHHHHHh
Q 024390 211 AELSKPLEDYYQK-QKKLLEFQVGSAP---VETWQGLLTALHL 249 (268)
Q Consensus 211 ~~~~~~l~~~y~~-~~~l~~Ida~~s~---eev~~~I~~~L~~ 249 (268)
......+...=+. ..-+++|+++..- -.|.+-|.+.|..
T Consensus 190 ~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~ 232 (493)
T TIGR03708 190 RKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRA 232 (493)
T ss_pred HHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 5554444332211 2368999987542 2355555555543
No 344
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.03 E-value=0.007 Score=52.48 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=24.6
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
|+.| ++..+.|.|+||||||++|..++-.
T Consensus 14 GGi~-~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 14 GGIE-TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444 7889999999999999999999743
No 345
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.01 E-value=0.0045 Score=53.96 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~ 110 (268)
..+..++|.|+||+||||+|+.|+. ...+++.+
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d 42 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFD 42 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC--CCEEEecc
Confidence 3456799999999999999999973 23344444
No 346
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.01 E-value=0.0054 Score=62.49 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+..|+|.||||+|||++++.|++.++..++.+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 34599999999999999999999998765543
No 347
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.0054 Score=59.26 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=24.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
.++|.||||+||||+|+.||+.++..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 48999999999999999999999874
No 348
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.01 E-value=0.0057 Score=62.72 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
++..++|.||||+||||+++.+++.++..++
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~ 378 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5668999999999999999999999987654
No 349
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.00 E-value=0.0074 Score=49.92 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
+.+.|+|++||||||+++.|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999863
No 350
>PHA02624 large T antigen; Provisional
Probab=96.00 E-value=0.0071 Score=59.79 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+...|+|.||||+||||++..|.+.+|-..+++
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 455799999999999999999999996556665
No 351
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.99 E-value=0.0071 Score=54.61 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..|+|+||.|+||||.+..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 352
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.041 Score=55.57 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=31.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHhh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQD 116 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~--dlir~~ 116 (268)
=|++.||||+|||-+|+.+|-++++.++|+. +|+-..
T Consensus 707 GILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMY 745 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMY 745 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHH
Confidence 3999999999999999999999998888873 555433
No 353
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.98 E-value=0.11 Score=49.39 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+..|.+.|--||||||-|-.||.+|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~l 124 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYL 124 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHH
Confidence 456789999999999999999999887
No 354
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=95.98 E-value=0.0064 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
|.+|+++|++|+||||+...|...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999998754
No 355
>PTZ00035 Rad51 protein; Provisional
Probab=95.97 E-value=0.012 Score=54.46 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=24.1
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
|+.| .+..+.|.|+||||||++|..++-
T Consensus 113 GGi~-~G~iteI~G~~GsGKT~l~~~l~~ 140 (337)
T PTZ00035 113 GGIE-TGSITELFGEFRTGKTQLCHTLCV 140 (337)
T ss_pred CCCC-CCeEEEEECCCCCchhHHHHHHHH
Confidence 4555 788899999999999999999874
No 356
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=95.97 E-value=0.44 Score=42.71 Aligned_cols=169 Identities=11% Similarity=0.007 Sum_probs=84.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH---HhhcCCCChhHHHHHHHHhccCcc--cHHHHHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV---RQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLLSKRLE 151 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli---r~~~~~~~~~g~~i~~~l~~G~~i--p~~~~~~ll~~~l~ 151 (268)
.+..|+|.|..||||....+.|.+.++-..+.+-.+- .++ .....++..-+..=..|+.. ....-..++..++.
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE-~~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~rv~ 133 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEE-LDHDFLWRIHKALPERGEIGIFNRSHYEDVLVVRVH 133 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHH-HcCchHHHHHHhCCCCCeEEEEcCccccchhhhhhc
Confidence 5789999999999999999999998865444431110 000 00011111111111222210 11111222222222
Q ss_pred cCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH----------------HHHHHHHHH
Q 024390 152 DGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS----------------LKEKLEAYA 211 (268)
Q Consensus 152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~----------------~~~rl~~y~ 211 (268)
.. + .. ..+.+...+...|++. +..-+-+||+++.++-.+|+.++ ..++.+.|.
T Consensus 134 g~-~-~~-----~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~yd~y~ 206 (264)
T TIGR03709 134 GL-I-PK-----AIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKERAYWDDYM 206 (264)
T ss_pred CC-C-CH-----HHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHHH
Confidence 11 0 00 0011112234445543 23346899999999999999432 233445555
Q ss_pred HHchHHHHHHHh-CCcEEEEeCCCC---HHHHHHHHHHHHHhhccc
Q 024390 212 ELSKPLEDYYQK-QKKLLEFQVGSA---PVETWQGLLTALHLQHIN 253 (268)
Q Consensus 212 ~~~~~l~~~y~~-~~~l~~Ida~~s---~eev~~~I~~~L~~~~~~ 253 (268)
+....++..=+. ..-+++|+++.. --.|.+-|.+.|......
T Consensus 207 ~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~~~~~ 252 (264)
T TIGR03709 207 EAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALESLDLK 252 (264)
T ss_pred HHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 544444332111 346899998754 334667777777765443
No 357
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.97 E-value=0.0074 Score=61.33 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+...++|.||||+||||+++.+++..+..++.+
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~l 83 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSL 83 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceee
Confidence 334689999999999999999999887665444
No 358
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.96 E-value=0.0064 Score=48.96 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~ 101 (268)
+|+++|.+|+||||+..+|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999764
No 359
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.95 E-value=0.0067 Score=53.02 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.++-.+.|+||+||||||+-..|+-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5778899999999999999998874
No 360
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.0083 Score=56.33 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++..++|+||+|+||||++..|+..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999999764
No 361
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.94 E-value=0.005 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l 102 (268)
|+|.|+|||||||..+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999884
No 362
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.93 E-value=0.0073 Score=47.32 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+|+|+|.+||||||+...|....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999887643
No 363
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.93 E-value=0.0075 Score=48.54 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+|+|+|.||+||||+..++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998875
No 364
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.93 E-value=0.0057 Score=48.83 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~ 100 (268)
+|+|+|++||||||+...+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 365
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.018 Score=51.22 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=33.6
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhcCCC
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPR 120 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~~~~ 120 (268)
|..|.+| +++.||||+|||.+++.+|.+-... .+.-.+++.+.+..+
T Consensus 185 gidpprg--vllygppg~gktml~kava~~t~a~firvvgsefvqkylgeg 233 (408)
T KOG0727|consen 185 GIDPPRG--VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG 233 (408)
T ss_pred CCCCCcc--eEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence 4455565 8999999999999999999987544 344456666655433
No 366
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.92 E-value=0.0076 Score=61.54 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=27.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCc--cchhHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSI 112 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~--is~~dl 112 (268)
.++|.||||+|||++|+.||+.++.+. +++.+.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~ 524 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhh
Confidence 589999999999999999999997654 444443
No 367
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.92 E-value=0.0071 Score=50.89 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466789999999999999999998543
No 368
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.92 E-value=0.0066 Score=48.81 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~ 101 (268)
+|+++|+|||||||+.+++...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999998743
No 369
>PRK10646 ADP-binding protein; Provisional
Probab=95.90 E-value=0.01 Score=48.82 Aligned_cols=44 Identities=11% Similarity=0.023 Sum_probs=33.2
Q ss_pred CCcchHhhhccccccCCCCCCCccCCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 52 ESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
+++-.++++.+....+ .+..|++.|.-|+||||+++.|++.+|+
T Consensus 11 ~~~t~~l~~~la~~l~---------~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 11 EQATLDLGARVAKACD---------GATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHHHHHhCC---------CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4455566665532221 3457999999999999999999999986
No 370
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.90 E-value=0.0085 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+|-+.||||||||++...+.+.+
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L 37 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRAL 37 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHH
Confidence 689999999999999988766655
No 371
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.90 E-value=0.007 Score=50.31 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHHHH
Q 024390 81 WAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~ 101 (268)
++|.|+||+|||+++..++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999988664
No 372
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.89 E-value=0.0075 Score=50.60 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+|-+|.|+||+||||||+-+.+|...
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 567789999999999999999999743
No 373
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.88 E-value=0.0074 Score=51.58 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998654
No 374
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.88 E-value=0.0072 Score=58.99 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~ 106 (268)
..++|.||||+||||+|+.+|+.+++.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 4699999999999999999999998754
No 375
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.027 Score=55.77 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQD 116 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~ 116 (268)
++=+++.||||+|||.+|+.+|-.-+++++++ .+.+.-.
T Consensus 183 PkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 183 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred ccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 34489999999999999999999999886554 4555443
No 376
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.86 E-value=0.0076 Score=51.73 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 367789999999999999999998654
No 377
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.86 E-value=0.0076 Score=51.72 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999999654
No 378
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.0073 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+ ++.|+|+.||||||+.+.|+-.+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 46 89999999999999999998543
No 379
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.83 E-value=0.0092 Score=51.11 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
..+.|.|.|++||||||+.+.+.+.++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988754
No 380
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.82 E-value=0.0083 Score=51.31 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999999654
No 381
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.82 E-value=0.008 Score=48.78 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+|+|+|.+|+||||+.++|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999998764
No 382
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.81 E-value=0.012 Score=50.88 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=29.3
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~ 110 (268)
++.| ++..+.|.|+||+|||++|..++... ++.++++.
T Consensus 18 GGi~-~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFE-RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4444 78899999999999999999998643 34566654
No 383
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.81 E-value=0.0075 Score=48.66 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+|+|+|++|+||||+.+.|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999864
No 384
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.80 E-value=0.0081 Score=48.22 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~ 100 (268)
+|+++|+||+||||+.+++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999874
No 385
>PF13479 AAA_24: AAA domain
Probab=95.80 E-value=0.0067 Score=52.37 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
++.+++|.|+||+||||+|..+ =+..+|++
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~ 31 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDT 31 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC---CCeEEEEe
Confidence 5678999999999999999988 23335555
No 386
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.78 E-value=0.009 Score=53.07 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
.+|-++.|+|++|+||||+++.+++....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46788999999999999999999987654
No 387
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.0087 Score=52.83 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+-++.|+||+||||||+-+.+|--
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999853
No 388
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.78 E-value=0.0094 Score=53.03 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.+..|+|.|++||||||+.+.|.+...
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred cceEEEEECCCccccchHHHHHhhhcc
Confidence 467899999999999999999988763
No 389
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.78 E-value=0.0083 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
.|.|+|++||||||++..|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998875
No 390
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.78 E-value=0.0079 Score=47.50 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~ 100 (268)
+|+++|+|||||||+...|..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998864
No 391
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.77 E-value=0.0089 Score=51.02 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 392
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.77 E-value=0.0086 Score=51.23 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466789999999999999999998654
No 393
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.77 E-value=0.091 Score=52.34 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=29.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHh-------CCCccchhHHHHhh
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVRQD 116 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l-------~~~~is~~dlir~~ 116 (268)
++|.|++|+|||.+++.++... .+.+++..+++.+.
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 8999999999999999999864 34678887776553
No 394
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.77 E-value=0.0094 Score=49.63 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+..+|+|+|++||||||+.+.|..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh
Confidence 4678899999999999999999975
No 395
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.77 E-value=0.0089 Score=51.40 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 396
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.77 E-value=0.0072 Score=56.19 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~ 110 (268)
..+-+++|.||+||||||+-+.|| |+...+.|
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IA---Gfe~p~~G 60 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIA---GFEQPSSG 60 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCc
Confidence 466789999999999999999998 44444444
No 397
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.76 E-value=0.0091 Score=48.79 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+|+|+|.||+||||+.+++.+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998753
No 398
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.76 E-value=0.01 Score=53.95 Aligned_cols=28 Identities=18% Similarity=0.059 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~ 106 (268)
..+++.|+||+|||++++.+++.++..+
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 3566689999999999999999876543
No 399
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.76 E-value=0.0081 Score=52.20 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 467789999999999999999998654
No 400
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.74 E-value=0.0082 Score=48.75 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~ 101 (268)
+|+++|++||||||+.+++...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999988653
No 401
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.0093 Score=50.92 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 366789999999999999999999653
No 402
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.023 Score=55.44 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=24.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPR 106 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~ 106 (268)
+++.||-|+||||.|+.+|+.+|+..
T Consensus 41 YlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 41 YLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred hhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 79999999999999999999999876
No 403
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.73 E-value=0.0091 Score=50.78 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=16.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+|.||||+|||++...+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999997666665544
No 404
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.73 E-value=0.012 Score=57.32 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=23.8
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
++.| ++-.++|.|+||+|||++|..++.
T Consensus 26 GG~p-~Gs~~li~G~pGsGKT~l~~qf~~ 53 (509)
T PRK09302 26 GGLP-KGRPTLVSGTAGTGKTLFALQFLV 53 (509)
T ss_pred CCCC-CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4566 688899999999999999998754
No 405
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.73 E-value=0.0092 Score=50.68 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998654
No 406
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.0092 Score=51.93 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 407
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.72 E-value=0.032 Score=48.35 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=74.8
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcc--c------
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV--S------ 138 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i--p------ 138 (268)
|+.| .|-.++|.|.-|+|||.++++++--+ ...++++..-+++.+..-..++-.+.+.+..|.+. |
T Consensus 23 GGiP-~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~ 101 (235)
T COG2874 23 GGIP-VGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV 101 (235)
T ss_pred CCCc-cCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc
Confidence 5577 78899999999999999999997543 34567776666655543233333344555555431 1
Q ss_pred ---HHHHHHHHHHHHHcCCccCccEEEEcCCcC----C-HHHH-HHHH---hhcCCCeEEEEecCHHHHHhhh
Q 024390 139 ---EDIIFGLLSKRLEDGYYRGEIGFILDGLPR----S-RIQA-EILD---QLAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 139 ---~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr----~-~~qa-~~l~---~~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
......+|..-++.......+-+|+|.+-- . ..++ +.|. .+..-..+|.|++.+..+-+-.
T Consensus 102 ~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~ 174 (235)
T COG2874 102 NWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDV 174 (235)
T ss_pred ccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHHH
Confidence 223334444333332223466778887531 1 1122 2222 3345667999999988765543
No 408
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.72 E-value=0.0095 Score=50.89 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998643
No 409
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.72 E-value=0.0095 Score=51.21 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998654
No 410
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.72 E-value=0.0097 Score=60.69 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=29.5
Q ss_pred CCCe-EEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHH
Q 024390 76 RRGV-HWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIV 113 (268)
Q Consensus 76 ~~~~-~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dli 113 (268)
.++. .++|.||+|+|||++|+.||+.++.. .+++++..
T Consensus 481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 481 NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 3443 48999999999999999999999764 45555543
No 411
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.71 E-value=0.0096 Score=51.22 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 412
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.71 E-value=0.011 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..+|-|.|+||+||||+...|...|
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 413
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.71 E-value=0.013 Score=50.83 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.6
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
++.| ++-.++|.|+||+|||+++..++.
T Consensus 15 GGi~-~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 15 GGIP-RGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred CCCc-CCeEEEEECCCCCChHHHHHHHHH
Confidence 4555 788899999999999999988764
No 414
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.01 Score=49.56 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998543
No 415
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0098 Score=50.92 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 416
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.70 E-value=0.01 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
+..+|+|+|++||||||+.+.|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999875
No 417
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.70 E-value=0.01 Score=50.28 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+-++.|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56689999999999999999998754
No 418
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.0083 Score=58.57 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
-.++|.||||+||||+|+.+++.+++
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34799999999999999999999864
No 419
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.0096 Score=51.86 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467789999999999999999998654
No 420
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.69 E-value=0.011 Score=48.18 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~ 100 (268)
..+|+|+|+||+||||+..++..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~ 25 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE 25 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999875
No 421
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.69 E-value=0.011 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l 102 (268)
+++.|.+|+||||++..|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999876
No 422
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.68 E-value=0.011 Score=52.25 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+.+++|+|++||||||++..|-..+
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 44689999999999999998886654
No 423
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.68 E-value=0.0097 Score=55.74 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
++..|.|+|.+||||||++..|.+.+.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 788999999999999999999998876
No 424
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.68 E-value=0.012 Score=48.24 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~ 110 (268)
.+.-++|.|++|+||||++..|.++ |+..++-|
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 4566999999999999999988875 66666443
No 425
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.011 Score=52.64 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHhh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD 116 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l---~--~~~is~~dlir~~ 116 (268)
++..++|.|+||+|||.++..|+..+ | +.++++.+++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 45679999999999999999998865 3 2467777877664
No 426
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.67 E-value=0.0098 Score=50.63 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 366789999999999999999998654
No 427
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.67 E-value=0.0095 Score=56.37 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
-++|.||||+||||+|+.+|+.+++.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 38999999999999999999999774
No 428
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.01 Score=51.53 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998764
No 429
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.66 E-value=0.01 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 367789999999999999999999765
No 430
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.01 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+|-.+-|+|++||||||+++.|+-.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 46778999999999999999999854
No 431
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.65 E-value=0.0083 Score=55.75 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
..+..|+|.|++||||||+.+.|.....
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 3567899999999999999999998764
No 432
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.0096 Score=58.58 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
.++|.||||+||||+|+.||+.+++
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999875
No 433
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.0089 Score=61.58 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
.++|.||||+||||+|+.|++.+++.
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhccCc
Confidence 46999999999999999999999874
No 434
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.64 E-value=0.01 Score=51.79 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467789999999999999999998654
No 435
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.0098 Score=52.37 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.++|+|++||||||+.+.|+--+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 467789999999999999999997543
No 436
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.64 E-value=0.011 Score=48.36 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~ 100 (268)
-.+|+++|++|+||||+..++..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36799999999999999999864
No 437
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.01 Score=59.40 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
--++|.||+|+||||+|+.||+.+++.
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999999999874
No 438
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.63 E-value=0.011 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+..+|+|+|.+|+||||+..++..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhc
Confidence 4557899999999999999999875
No 439
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.011 Score=51.75 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 366789999999999999999998654
No 440
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.62 E-value=0.01 Score=57.69 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
-++|.||+|+||||+|+.+|+.+++.
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCc
Confidence 59999999999999999999988764
No 441
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.62 E-value=0.011 Score=49.21 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|.|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 366789999999999999999998653
No 442
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.61 E-value=0.013 Score=54.36 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
+..++++.||+|+||||+++.|.+.+.
T Consensus 87 ~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 87 RKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 677899999999999999999998763
No 443
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.61 E-value=0.0099 Score=50.88 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 366789999999999999999998653
No 444
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=95.61 E-value=0.012 Score=48.70 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=27.4
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
|-..+.|.|+|+--|||||++++||..+|-+
T Consensus 5 p~F~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 5 PFFVKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred hhhheeeeeecCcccChHHHHHHHHHHhCCC
Confidence 3456789999999999999999999999874
No 445
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.01 Score=51.03 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466789999999999999999998653
No 446
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.61 E-value=0.011 Score=57.59 Aligned_cols=31 Identities=23% Similarity=0.161 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
+..+.+|+||+||||||..+.|++.+|+.++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 4457899999999999999999999998653
No 447
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.011 Score=49.99 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+-++.|+|+.||||||+.+.|+-.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46678999999999999999999853
No 448
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.012 Score=48.94 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466789999999999999999998654
No 449
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.60 E-value=0.011 Score=51.06 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 450
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.60 E-value=0.012 Score=48.88 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|.|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467789999999999999999998654
No 451
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.60 E-value=0.011 Score=51.27 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999999654
No 452
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.60 E-value=0.011 Score=51.40 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998654
No 453
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.60 E-value=0.011 Score=48.68 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+|+|+|.||+||||+.+.+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998875
No 454
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.59 E-value=0.011 Score=51.85 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998654
No 455
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.011 Score=50.78 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 456
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.58 E-value=0.012 Score=51.10 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+|+.||||||+.+.|+-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467789999999999999999998643
No 457
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=95.57 E-value=0.011 Score=48.35 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++|+|+|++||||||+..++...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998863
No 458
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.57 E-value=0.011 Score=52.05 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999999764
No 459
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.57 E-value=0.012 Score=49.38 Aligned_cols=27 Identities=26% Similarity=0.144 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 460
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.011 Score=51.70 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999999754
No 461
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.57 E-value=0.011 Score=47.62 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+|+++|.+|+||||+...|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 467999999999999999999764
No 462
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.56 E-value=0.012 Score=48.59 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|.|+.||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998654
No 463
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.56 E-value=0.016 Score=47.40 Aligned_cols=28 Identities=25% Similarity=0.143 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
.+..|++.|.-||||||++|.+++.+|.
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 5668999999999999999999999985
No 464
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.56 E-value=0.012 Score=47.45 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+|+++|++||||||+.++|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998764
No 465
>COG4240 Predicted kinase [General function prediction only]
Probab=95.56 E-value=0.014 Score=51.17 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh------CCCccchhHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL------EVPRISMSSIVRQ 115 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l------~~~~is~~dlir~ 115 (268)
.++.++.|+||-||||||++..|-..+ ....+|+||+...
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt 93 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT 93 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc
Confidence 478899999999999999998765543 2456788887643
No 466
>PTZ00202 tuzin; Provisional
Probab=95.55 E-value=0.054 Score=52.05 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
.+++|.|++|+||||+++.+....+.+
T Consensus 287 rivvLtG~~G~GKTTLlR~~~~~l~~~ 313 (550)
T PTZ00202 287 RIVVFTGFRGCGKSSLCRSAVRKEGMP 313 (550)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCce
Confidence 489999999999999999999887743
No 467
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.55 E-value=0.012 Score=47.70 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~ 100 (268)
..+|+|+|++|+||||+..++..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh
Confidence 46799999999999999998853
No 468
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.55 E-value=0.012 Score=51.32 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467789999999999999999998654
No 469
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.55 E-value=0.012 Score=51.02 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999999754
No 470
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.025 Score=51.70 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCc--cchhHHHHhhc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIVRQDL 117 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~--is~~dlir~~~ 117 (268)
-++.+.|.||||.|||-+|+.++...|+.. ++.+.++.+.+
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 356689999999999999999999997754 45566665554
No 471
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.54 E-value=0.014 Score=52.91 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.....|-|+|+|||||||+...+.+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999888775
No 472
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.54 E-value=0.012 Score=51.41 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+-++.|+|+.||||||+.+.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999875
No 473
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.54 E-value=0.012 Score=50.98 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 474
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.54 E-value=0.014 Score=53.25 Aligned_cols=29 Identities=14% Similarity=0.009 Sum_probs=25.0
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
|+.| .+..+.|.|+||||||++|-.++-.
T Consensus 90 GGi~-~g~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 90 GGIE-TQAITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred CCCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455 6888999999999999999999865
No 475
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.54 E-value=0.012 Score=49.90 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++-++.|.|+.||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998644
No 476
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.53 E-value=0.012 Score=54.20 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..|+|.|++||||||+.+.|...+
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999998764
No 477
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.52 E-value=0.012 Score=52.14 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..|-++.|+|+.||||||+.+.|+..+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999999764
No 478
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=95.52 E-value=0.012 Score=46.99 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~ 101 (268)
+|+|+|++|+||||+..++...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988753
No 479
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.52 E-value=0.012 Score=49.52 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 366789999999999999999998654
No 480
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.51 E-value=0.013 Score=48.94 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998643
No 481
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.02 Score=51.35 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=41.8
Q ss_pred CcchHhhhccccccCCCCC-----CCccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhcC
Q 024390 53 SDSDQHRDSLRSVTLPDTE-----GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDLS 118 (268)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~~-----~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~~ 118 (268)
++.+.|++. -..|.++++ |..|.++ |++.||||+|||-.|+.+|.+-+..+|-+ .+++.+...
T Consensus 184 eqieklrev-ve~pll~perfv~lgidppkg--vllygppgtgktl~aravanrtdacfirvigselvqkyvg 253 (435)
T KOG0729|consen 184 EQIEKLREV-VELPLLHPERFVNLGIDPPKG--VLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVG 253 (435)
T ss_pred HHHHHHHHH-HhccccCHHHHhhcCCCCCCc--eEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhh
Confidence 344555553 223444544 3344444 89999999999999999999998776654 466655543
No 482
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.51 E-value=0.013 Score=49.98 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 467789999999999999999998643
No 483
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.017 Score=54.41 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++.+++|+||.|+||||.+..||..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999765
No 484
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.51 E-value=0.013 Score=49.89 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|.|+.||||||+.+.|+-.+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 467789999999999999999998654
No 485
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.50 E-value=0.012 Score=51.12 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+-++.|+|+.||||||+.+.|+-.+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999999754
No 486
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.50 E-value=0.012 Score=52.55 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
..+.+++|+||.||||||+-+.|+..+.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3678899999999999999999998653
No 487
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.50 E-value=0.01 Score=46.89 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHHHH
Q 024390 81 WAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~ 101 (268)
|+|+|++|+||||+.+.|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999753
No 488
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.50 E-value=0.011 Score=47.88 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
+|+|+|++|+||||+...|...+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 48999999999999999997654
No 489
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.49 E-value=0.012 Score=51.08 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 490
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.49 E-value=0.012 Score=51.72 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 466789999999999999999999653
No 491
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.48 E-value=0.013 Score=53.47 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..|+|.|++||||||+.+.|.+.+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998876
No 492
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.48 E-value=0.013 Score=51.24 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 493
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.47 E-value=0.096 Score=49.61 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
+--++|.||||+|||++|+.+|+.+.+.
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3459999999999999999999998764
No 494
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.47 E-value=0.013 Score=50.50 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356789999999999999999998643
No 495
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.47 E-value=0.012 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l 102 (268)
|.++|++||||||++..++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7889999999999999999876
No 496
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.013 Score=51.95 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999999654
No 497
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.47 E-value=0.014 Score=50.57 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
..+-++.|+|+.||||||+.+.|+..+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 4677899999999999999999986543
No 498
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.013 Score=51.48 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 366789999999999999999999764
No 499
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.013 Score=50.81 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 367789999999999999999998664
No 500
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.46 E-value=0.013 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356789999999999999999999654
Done!