Query 024390
Match_columns 268
No_of_seqs 179 out of 1534
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 07:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 1E-38 3.4E-43 275.9 23.4 176 76-252 27-216 (217)
2 3sr0_A Adenylate kinase; phosp 100.0 2E-38 6.8E-43 272.1 19.9 167 79-250 1-205 (206)
3 3gmt_A Adenylate kinase; ssgci 100.0 1.6E-34 5.6E-39 251.0 18.8 170 77-248 7-228 (230)
4 3tlx_A Adenylate kinase 2; str 100.0 9.4E-30 3.2E-34 222.7 23.1 171 76-248 27-242 (243)
5 3dl0_A Adenylate kinase; phosp 100.0 5.1E-29 1.8E-33 212.8 19.0 169 79-249 1-214 (216)
6 3fb4_A Adenylate kinase; psych 100.0 1.3E-28 4.5E-33 210.1 20.1 169 79-249 1-214 (216)
7 3be4_A Adenylate kinase; malar 100.0 1.8E-28 6E-33 210.5 20.2 170 76-247 3-217 (217)
8 1ak2_A Adenylate kinase isoenz 100.0 2.4E-28 8.3E-33 211.8 20.3 174 75-250 13-231 (233)
9 1aky_A Adenylate kinase; ATP:A 100.0 4.5E-28 1.5E-32 207.9 21.3 171 76-248 2-218 (220)
10 1e4v_A Adenylate kinase; trans 100.0 1.5E-27 5.3E-32 203.9 18.6 167 79-247 1-213 (214)
11 2xb4_A Adenylate kinase; ATP-b 100.0 4.8E-27 1.6E-31 202.6 19.3 166 79-247 1-222 (223)
12 1zd8_A GTP:AMP phosphotransfer 99.9 3E-26 1E-30 197.6 20.2 170 77-250 6-215 (227)
13 2c95_A Adenylate kinase 1; tra 99.9 1.2E-25 4E-30 188.2 21.8 173 76-249 7-193 (196)
14 1ukz_A Uridylate kinase; trans 99.9 1.4E-25 4.7E-30 189.6 22.4 175 75-249 12-201 (203)
15 2cdn_A Adenylate kinase; phosp 99.9 6E-26 2E-30 191.9 19.7 170 75-248 17-200 (201)
16 1zak_A Adenylate kinase; ATP:A 99.9 5.1E-26 1.7E-30 195.3 17.1 171 77-250 4-211 (222)
17 2bwj_A Adenylate kinase 5; pho 99.9 3.8E-25 1.3E-29 185.4 20.2 173 77-250 11-197 (199)
18 3cm0_A Adenylate kinase; ATP-b 99.9 3.2E-25 1.1E-29 184.4 19.3 166 76-248 2-185 (186)
19 1qf9_A UMP/CMP kinase, protein 99.9 8.7E-25 3E-29 181.9 21.9 171 77-250 5-192 (194)
20 1tev_A UMP-CMP kinase; ploop, 99.9 1E-24 3.5E-29 181.8 21.5 173 77-249 2-194 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.9 7.8E-21 2.7E-25 165.6 21.9 170 77-250 26-235 (246)
22 3lw7_A Adenylate kinase relate 99.8 1.1E-17 3.9E-22 135.9 16.6 158 79-249 2-176 (179)
23 4eaq_A DTMP kinase, thymidylat 99.7 5E-17 1.7E-21 140.8 15.4 168 76-250 24-225 (229)
24 2pbr_A DTMP kinase, thymidylat 99.7 9.5E-17 3.2E-21 133.3 15.9 153 79-249 1-191 (195)
25 3vaa_A Shikimate kinase, SK; s 99.7 9.6E-17 3.3E-21 135.3 14.1 154 77-250 24-196 (199)
26 3v9p_A DTMP kinase, thymidylat 99.7 2.7E-17 9.2E-22 142.6 10.2 174 76-249 23-226 (227)
27 4hlc_A DTMP kinase, thymidylat 99.7 1.4E-15 4.6E-20 129.8 19.4 167 78-250 2-201 (205)
28 2wwf_A Thymidilate kinase, put 99.7 8.6E-17 2.9E-21 135.8 10.1 168 76-250 8-200 (212)
29 3t61_A Gluconokinase; PSI-biol 99.7 1.3E-15 4.4E-20 128.3 16.5 158 77-253 17-183 (202)
30 2z0h_A DTMP kinase, thymidylat 99.7 4.3E-15 1.5E-19 123.7 18.5 157 79-249 1-191 (197)
31 1nks_A Adenylate kinase; therm 99.7 5.7E-16 1.9E-20 128.3 12.8 162 79-247 2-193 (194)
32 2v54_A DTMP kinase, thymidylat 99.7 1.3E-15 4.4E-20 127.8 13.5 161 77-250 3-191 (204)
33 4tmk_A Protein (thymidylate ki 99.7 1.6E-15 5.6E-20 130.1 14.4 167 77-250 2-207 (213)
34 2plr_A DTMP kinase, probable t 99.6 2.7E-15 9.4E-20 126.1 13.6 159 77-250 3-208 (213)
35 2pt5_A Shikimate kinase, SK; a 99.6 1.7E-15 5.8E-20 123.4 11.8 151 79-250 1-164 (168)
36 3lv8_A DTMP kinase, thymidylat 99.6 6.2E-15 2.1E-19 128.4 16.0 168 76-250 25-229 (236)
37 4edh_A DTMP kinase, thymidylat 99.6 5.4E-15 1.8E-19 126.8 15.1 169 77-250 5-207 (213)
38 3hjn_A DTMP kinase, thymidylat 99.6 1.2E-14 4.3E-19 123.0 16.9 163 79-250 1-192 (197)
39 1nn5_A Similar to deoxythymidy 99.6 3.5E-15 1.2E-19 126.0 13.0 166 77-250 8-201 (215)
40 3trf_A Shikimate kinase, SK; a 99.6 1.2E-14 4E-19 120.4 15.9 155 78-250 5-175 (185)
41 1e6c_A Shikimate kinase; phosp 99.6 4.2E-15 1.4E-19 121.5 12.7 150 78-248 2-169 (173)
42 2iyv_A Shikimate kinase, SK; t 99.6 4.3E-15 1.5E-19 123.0 12.6 152 78-248 2-167 (184)
43 1ly1_A Polynucleotide kinase; 99.6 2.4E-15 8.2E-20 123.3 11.0 157 78-249 2-172 (181)
44 1kht_A Adenylate kinase; phosp 99.6 4.1E-15 1.4E-19 123.1 12.4 158 78-247 3-191 (192)
45 1zuh_A Shikimate kinase; alpha 99.6 7.3E-15 2.5E-19 120.0 12.9 152 77-247 6-167 (168)
46 1via_A Shikimate kinase; struc 99.6 3.3E-15 1.1E-19 123.0 10.3 154 79-250 5-167 (175)
47 3kb2_A SPBC2 prophage-derived 99.6 1.6E-14 5.4E-19 117.6 14.1 144 79-250 2-167 (173)
48 2rhm_A Putative kinase; P-loop 99.6 7.3E-15 2.5E-19 121.9 12.3 164 76-248 3-183 (193)
49 3nwj_A ATSK2; P loop, shikimat 99.6 2E-14 6.9E-19 126.2 13.1 160 78-250 48-237 (250)
50 1y63_A LMAJ004144AAA protein; 99.6 2.7E-14 9.4E-19 118.8 12.6 154 76-248 8-173 (184)
51 1vht_A Dephospho-COA kinase; s 99.6 5.9E-14 2E-18 119.4 14.6 158 77-250 3-195 (218)
52 1jjv_A Dephospho-COA kinase; P 99.6 2.1E-13 7.1E-18 114.9 17.5 156 79-249 3-196 (206)
53 3tmk_A Thymidylate kinase; pho 99.5 1.8E-14 6.2E-19 123.8 10.6 168 77-251 4-204 (216)
54 2vli_A Antibiotic resistance p 99.5 1.3E-13 4.6E-18 113.5 14.9 153 76-250 3-172 (183)
55 3ld9_A DTMP kinase, thymidylat 99.5 5.5E-14 1.9E-18 121.4 12.9 168 76-250 19-216 (223)
56 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 3.8E-14 1.3E-18 124.5 12.1 157 77-250 3-174 (260)
57 1cke_A CK, MSSA, protein (cyti 99.5 9.9E-14 3.4E-18 118.2 13.7 167 78-250 5-223 (227)
58 2jaq_A Deoxyguanosine kinase; 99.5 2.1E-13 7.1E-18 113.8 15.1 161 79-249 1-200 (205)
59 2f6r_A COA synthase, bifunctio 99.5 1.4E-13 4.8E-18 122.5 14.0 166 74-249 71-268 (281)
60 4eun_A Thermoresistant glucoki 99.5 5.7E-14 1.9E-18 118.3 10.2 158 77-250 28-194 (200)
61 1kag_A SKI, shikimate kinase I 99.5 2.1E-13 7.3E-18 111.3 13.0 154 77-249 3-172 (173)
62 1knq_A Gluconate kinase; ALFA/ 99.5 1E-12 3.5E-17 107.7 17.0 152 77-249 7-173 (175)
63 2if2_A Dephospho-COA kinase; a 99.5 1.4E-13 4.7E-18 115.7 11.4 159 79-251 2-193 (204)
64 1ltq_A Polynucleotide kinase; 99.5 3.6E-14 1.2E-18 126.4 7.2 131 78-213 2-146 (301)
65 3iij_A Coilin-interacting nucl 99.5 1.9E-13 6.4E-18 112.8 10.7 153 77-249 10-173 (180)
66 1m7g_A Adenylylsulfate kinase; 99.4 3E-13 1E-17 114.8 10.3 163 76-253 23-206 (211)
67 3ake_A Cytidylate kinase; CMP 99.4 1.1E-12 3.7E-17 110.0 13.1 159 80-248 4-207 (208)
68 1uf9_A TT1252 protein; P-loop, 99.4 8.8E-13 3E-17 110.1 11.7 159 75-249 5-193 (203)
69 2yvu_A Probable adenylyl-sulfa 99.4 1.6E-12 5.6E-17 107.7 12.5 159 76-249 11-183 (186)
70 1p5z_B DCK, deoxycytidine kina 99.4 4.4E-13 1.5E-17 117.6 9.3 69 181-250 174-259 (263)
71 1q3t_A Cytidylate kinase; nucl 99.4 3.6E-12 1.2E-16 110.0 13.8 166 75-249 13-234 (236)
72 2h92_A Cytidylate kinase; ross 99.4 4.7E-13 1.6E-17 113.7 7.4 163 78-249 3-217 (219)
73 2qt1_A Nicotinamide riboside k 99.4 3.8E-13 1.3E-17 113.5 6.0 164 77-249 20-205 (207)
74 1uj2_A Uridine-cytidine kinase 99.4 1.1E-12 3.7E-17 114.4 8.6 164 76-250 20-234 (252)
75 4e22_A Cytidylate kinase; P-lo 99.3 1.9E-11 6.6E-16 106.8 15.2 167 77-251 26-246 (252)
76 3fdi_A Uncharacterized protein 99.3 4.2E-11 1.4E-15 101.4 16.8 162 78-250 6-199 (201)
77 2grj_A Dephospho-COA kinase; T 99.3 5E-12 1.7E-16 106.5 9.0 150 77-249 11-186 (192)
78 2qor_A Guanylate kinase; phosp 99.3 1.4E-11 4.7E-16 103.9 11.1 162 76-250 10-197 (204)
79 3hdt_A Putative kinase; struct 99.3 8.9E-11 3E-15 101.2 16.4 168 77-251 13-220 (223)
80 4i1u_A Dephospho-COA kinase; s 99.3 9.9E-11 3.4E-15 100.0 16.0 163 77-250 8-202 (210)
81 1qhx_A CPT, protein (chloramph 99.3 1.6E-11 5.6E-16 100.5 10.1 161 78-247 3-176 (178)
82 1gtv_A TMK, thymidylate kinase 99.2 8.8E-13 3E-17 111.2 -0.1 164 79-245 1-209 (214)
83 2pez_A Bifunctional 3'-phospho 99.2 7.2E-11 2.5E-15 97.1 11.3 159 76-250 3-176 (179)
84 2p5t_B PEZT; postsegregational 99.2 7.1E-11 2.4E-15 103.1 8.9 119 76-203 30-158 (253)
85 3r20_A Cytidylate kinase; stru 99.2 3.2E-10 1.1E-14 98.4 12.7 41 76-116 7-47 (233)
86 1gvn_B Zeta; postsegregational 99.1 1.5E-10 5.3E-15 103.1 10.5 112 76-199 31-159 (287)
87 3uie_A Adenylyl-sulfate kinase 99.1 5E-10 1.7E-14 94.0 12.0 161 76-251 23-196 (200)
88 3zvl_A Bifunctional polynucleo 99.1 4.5E-10 1.5E-14 105.2 12.6 99 75-202 255-357 (416)
89 1x6v_B Bifunctional 3'-phospho 99.1 5.5E-10 1.9E-14 109.4 13.1 163 77-253 51-226 (630)
90 2vp4_A Deoxynucleoside kinase; 99.1 4.8E-10 1.6E-14 96.4 10.4 70 180-249 145-224 (230)
91 2gks_A Bifunctional SAT/APS ki 99.0 6.6E-10 2.2E-14 107.5 10.4 162 77-251 371-542 (546)
92 2ocp_A DGK, deoxyguanosine kin 99.0 1.6E-09 5.5E-14 93.4 10.5 68 181-248 149-232 (241)
93 1m8p_A Sulfate adenylyltransfe 98.9 6.7E-09 2.3E-13 101.0 10.8 159 77-252 395-569 (573)
94 2j41_A Guanylate kinase; GMP, 98.9 1.3E-08 4.3E-13 84.9 10.4 159 77-251 5-188 (207)
95 2axn_A 6-phosphofructo-2-kinas 98.9 1.6E-09 5.5E-14 104.2 5.3 115 77-199 34-165 (520)
96 3tr0_A Guanylate kinase, GMP k 98.8 1.1E-08 3.8E-13 85.2 8.5 157 77-251 6-188 (205)
97 3tau_A Guanylate kinase, GMP k 98.8 1.2E-07 4E-12 80.1 13.1 160 77-251 7-190 (208)
98 2ze6_A Isopentenyl transferase 98.7 3.6E-08 1.2E-12 86.0 10.0 119 79-202 2-138 (253)
99 2bdt_A BH3686; alpha-beta prot 98.7 2.2E-07 7.5E-12 76.6 11.9 112 78-200 2-120 (189)
100 1zp6_A Hypothetical protein AT 98.6 1.3E-08 4.6E-13 83.8 2.5 161 77-251 8-177 (191)
101 1p6x_A Thymidine kinase; P-loo 98.6 9E-08 3.1E-12 87.0 7.5 30 75-104 4-33 (334)
102 3cr8_A Sulfate adenylyltranfer 98.5 2.4E-07 8.3E-12 89.6 9.7 161 77-251 368-541 (552)
103 3asz_A Uridine kinase; cytidin 98.5 1.3E-06 4.5E-11 73.0 12.2 38 77-114 5-44 (211)
104 1kgd_A CASK, peripheral plasma 98.5 2.2E-06 7.6E-11 70.4 13.0 160 75-249 2-178 (180)
105 3a8t_A Adenylate isopentenyltr 98.4 4.2E-07 1.4E-11 82.7 7.3 36 77-112 39-74 (339)
106 1ex7_A Guanylate kinase; subst 98.4 1.1E-06 3.9E-11 73.3 9.1 156 81-249 4-184 (186)
107 3ch4_B Pmkase, phosphomevalona 98.4 1.1E-06 3.7E-11 74.3 8.9 156 78-249 11-189 (202)
108 3czq_A Putative polyphosphate 98.4 2.5E-06 8.5E-11 76.4 11.5 165 76-262 84-295 (304)
109 2jeo_A Uridine-cytidine kinase 98.4 8.1E-06 2.8E-10 70.3 14.4 30 76-105 23-52 (245)
110 1bif_A 6-phosphofructo-2-kinas 98.4 1.2E-06 4.1E-11 82.9 9.6 116 76-199 37-169 (469)
111 3a00_A Guanylate kinase, GMP k 98.3 3.6E-06 1.2E-10 69.4 11.1 158 79-249 2-184 (186)
112 1rz3_A Hypothetical protein rb 98.3 1.4E-06 4.7E-11 72.9 7.2 27 76-102 20-46 (201)
113 1osn_A Thymidine kinase, VZV-T 98.2 1.6E-06 5.5E-11 79.0 6.9 29 76-104 10-39 (341)
114 3lnc_A Guanylate kinase, GMP k 98.2 9.8E-06 3.3E-10 68.9 11.1 27 76-102 25-52 (231)
115 1e2k_A Thymidine kinase; trans 98.2 1.8E-06 6E-11 78.4 6.1 28 76-103 2-29 (331)
116 1of1_A Thymidine kinase; trans 98.1 1.7E-05 6E-10 73.0 11.1 28 76-103 47-74 (376)
117 3crm_A TRNA delta(2)-isopenten 98.0 2.5E-06 8.6E-11 77.1 2.8 37 77-113 4-40 (323)
118 3ney_A 55 kDa erythrocyte memb 97.9 0.00011 3.7E-09 61.8 11.2 28 76-103 17-44 (197)
119 3tqc_A Pantothenate kinase; bi 97.8 1E-05 3.4E-10 73.1 4.2 37 76-112 90-133 (321)
120 1a7j_A Phosphoribulokinase; tr 97.8 3.9E-06 1.3E-10 74.6 0.9 38 77-114 4-46 (290)
121 3czp_A Putative polyphosphate 97.8 0.00019 6.4E-09 68.5 11.9 166 76-249 41-235 (500)
122 1dek_A Deoxynucleoside monopho 97.7 1.9E-05 6.4E-10 68.5 4.0 39 79-117 2-40 (241)
123 3d3q_A TRNA delta(2)-isopenten 97.7 1.1E-05 3.7E-10 73.4 2.6 34 79-112 8-41 (340)
124 3czp_A Putative polyphosphate 97.7 0.00025 8.4E-09 67.7 11.8 149 76-249 298-492 (500)
125 3foz_A TRNA delta(2)-isopenten 97.6 2.2E-05 7.4E-10 70.6 3.0 35 77-111 9-43 (316)
126 2ga8_A Hypothetical 39.9 kDa p 97.6 1.7E-05 5.8E-10 72.6 2.3 30 77-106 23-52 (359)
127 3exa_A TRNA delta(2)-isopenten 97.6 2.2E-05 7.6E-10 70.7 2.9 35 78-112 3-37 (322)
128 1g8f_A Sulfate adenylyltransfe 97.6 2.9E-05 9.8E-10 74.3 3.3 29 76-104 393-421 (511)
129 3t15_A Ribulose bisphosphate c 97.5 5E-05 1.7E-09 67.3 4.1 38 77-114 35-74 (293)
130 3c8u_A Fructokinase; YP_612366 97.5 5.3E-05 1.8E-09 63.4 2.9 36 76-111 20-60 (208)
131 3ec2_A DNA replication protein 97.4 0.00013 4.4E-09 59.3 4.7 39 77-115 37-81 (180)
132 4gp7_A Metallophosphoesterase; 97.4 0.0012 4.2E-08 53.4 10.5 103 77-199 8-118 (171)
133 4b4t_K 26S protease regulatory 97.4 7.7E-05 2.6E-09 69.9 3.5 30 80-109 208-237 (428)
134 4b4t_L 26S protease subunit RP 97.4 9.3E-05 3.2E-09 69.5 3.7 35 79-113 216-252 (437)
135 4b4t_J 26S protease regulatory 97.4 0.0001 3.5E-09 68.5 3.9 34 80-113 184-219 (405)
136 4b4t_M 26S protease regulatory 97.4 8.9E-05 3.1E-09 69.6 3.5 35 79-113 216-252 (434)
137 3eph_A TRNA isopentenyltransfe 97.3 8.2E-05 2.8E-09 69.1 2.6 33 79-111 3-35 (409)
138 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00016 5.3E-09 61.9 4.0 32 78-109 39-70 (262)
139 1lv7_A FTSH; alpha/beta domain 97.3 0.00017 5.7E-09 62.0 4.1 30 80-109 47-76 (257)
140 2kjq_A DNAA-related protein; s 97.3 0.00027 9.4E-09 56.3 4.8 25 78-102 36-60 (149)
141 1sq5_A Pantothenate kinase; P- 97.2 0.00016 5.6E-09 64.4 3.8 37 76-112 78-121 (308)
142 3hws_A ATP-dependent CLP prote 97.2 0.00019 6.4E-09 65.2 4.0 32 78-109 51-82 (363)
143 2x8a_A Nuclear valosin-contain 97.2 0.00018 6.1E-09 63.2 3.4 28 81-108 47-74 (274)
144 4b4t_I 26S protease regulatory 97.2 0.0002 7E-09 66.9 3.7 35 79-113 217-253 (437)
145 1g41_A Heat shock protein HSLU 97.2 0.00021 7.3E-09 67.2 3.9 33 78-110 50-82 (444)
146 3cf0_A Transitional endoplasmi 97.2 0.00019 6.7E-09 63.5 3.4 39 78-116 49-89 (301)
147 3h4m_A Proteasome-activating n 97.2 0.00021 7.1E-09 62.2 3.6 32 78-109 51-82 (285)
148 4b4t_H 26S protease regulatory 97.2 0.00018 6.1E-09 67.9 3.2 35 79-113 244-280 (467)
149 1d2n_A N-ethylmaleimide-sensit 97.2 0.00027 9.2E-09 61.3 4.1 33 77-109 63-95 (272)
150 1ye8_A Protein THEP1, hypothet 97.2 0.00023 7.7E-09 58.6 3.4 25 79-103 1-25 (178)
151 3b9p_A CG5977-PA, isoform A; A 97.2 0.00021 7.1E-09 62.7 3.4 31 78-108 54-84 (297)
152 3syl_A Protein CBBX; photosynt 97.1 0.00027 9.1E-09 62.2 3.7 26 77-102 66-91 (309)
153 2qmh_A HPR kinase/phosphorylas 97.1 0.00025 8.4E-09 59.8 3.0 35 76-111 32-66 (205)
154 1ofh_A ATP-dependent HSL prote 97.1 0.00032 1.1E-08 61.4 3.6 30 78-107 50-79 (310)
155 1ixz_A ATP-dependent metallopr 97.1 0.00037 1.3E-08 59.7 4.0 29 81-109 52-80 (254)
156 1um8_A ATP-dependent CLP prote 97.0 0.00035 1.2E-08 63.6 3.8 32 78-109 72-103 (376)
157 3eie_A Vacuolar protein sortin 97.0 0.00036 1.2E-08 62.3 3.7 37 78-114 51-89 (322)
158 1odf_A YGR205W, hypothetical 3 97.0 0.00048 1.6E-08 61.1 4.3 38 76-113 29-74 (290)
159 1jbk_A CLPB protein; beta barr 97.0 0.00049 1.7E-08 55.0 4.0 25 78-102 43-67 (195)
160 2r62_A Cell division protease 97.0 0.0002 6.9E-09 61.8 1.6 29 81-109 47-75 (268)
161 3rhf_A Putative polyphosphate 97.0 0.0079 2.7E-07 53.1 11.8 156 76-253 73-271 (289)
162 1lvg_A Guanylate kinase, GMP k 97.0 0.00037 1.3E-08 57.9 3.2 27 77-103 3-29 (198)
163 1kjw_A Postsynaptic density pr 97.0 0.0065 2.2E-07 53.9 11.4 156 77-251 104-283 (295)
164 2p65_A Hypothetical protein PF 97.0 0.00034 1.2E-08 56.0 2.7 25 78-102 43-67 (187)
165 2w58_A DNAI, primosome compone 97.0 0.00058 2E-08 56.2 4.1 36 79-114 55-95 (202)
166 1fnn_A CDC6P, cell division co 96.9 0.0093 3.2E-07 53.5 12.3 24 79-102 45-68 (389)
167 3bos_A Putative DNA replicatio 96.9 0.00061 2.1E-08 56.9 3.8 35 78-112 52-91 (242)
168 1in4_A RUVB, holliday junction 96.8 0.00068 2.3E-08 60.9 4.0 28 79-106 52-79 (334)
169 2qp9_X Vacuolar protein sortin 96.8 0.00051 1.8E-08 62.4 3.2 35 80-114 86-122 (355)
170 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.0006 2E-08 61.1 3.5 28 79-106 46-74 (322)
171 1iy2_A ATP-dependent metallopr 96.8 0.00062 2.1E-08 59.3 3.5 29 81-109 76-104 (278)
172 2c9o_A RUVB-like 1; hexameric 96.8 0.00067 2.3E-08 63.7 3.8 31 79-109 64-96 (456)
173 2wjg_A FEOB, ferrous iron tran 96.8 0.00089 3E-08 53.9 4.0 29 73-101 2-30 (188)
174 3d8b_A Fidgetin-like protein 1 96.8 0.00071 2.4E-08 61.4 3.6 31 78-108 117-147 (357)
175 3pfi_A Holliday junction ATP-d 96.8 0.0008 2.7E-08 60.0 3.8 31 79-109 56-86 (338)
176 3n70_A Transport activator; si 96.7 0.00084 2.9E-08 52.8 3.4 23 80-102 26-48 (145)
177 1z6g_A Guanylate kinase; struc 96.7 0.00079 2.7E-08 56.8 3.3 26 77-102 22-47 (218)
178 1svm_A Large T antigen; AAA+ f 96.7 0.00093 3.2E-08 61.5 4.0 32 77-108 168-199 (377)
179 1znw_A Guanylate kinase, GMP k 96.7 0.00096 3.3E-08 55.5 3.7 28 76-103 18-45 (207)
180 3aez_A Pantothenate kinase; tr 96.7 0.0011 3.8E-08 59.3 4.3 27 76-102 88-114 (312)
181 2ehv_A Hypothetical protein PH 96.7 0.0009 3.1E-08 56.5 3.5 26 73-99 26-51 (251)
182 1tue_A Replication protein E1; 96.7 0.00083 2.8E-08 56.9 3.1 32 74-106 55-86 (212)
183 1s96_A Guanylate kinase, GMP k 96.7 0.001 3.6E-08 56.4 3.7 156 77-251 15-199 (219)
184 3vfd_A Spastin; ATPase, microt 96.7 0.00092 3.1E-08 61.2 3.5 32 78-109 148-179 (389)
185 2cvh_A DNA repair and recombin 96.6 0.0012 4.2E-08 54.6 3.8 28 73-101 16-43 (220)
186 4a74_A DNA repair and recombin 96.6 0.0011 3.8E-08 55.2 3.6 26 77-102 24-49 (231)
187 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0013 4.3E-08 54.8 3.8 28 73-101 19-46 (235)
188 2ce7_A Cell division protein F 96.6 0.0012 4.2E-08 62.6 4.1 29 81-109 52-80 (476)
189 1sxj_D Activator 1 41 kDa subu 96.6 0.0015 5E-08 58.2 4.5 23 81-103 61-83 (353)
190 4fcw_A Chaperone protein CLPB; 96.6 0.0013 4.6E-08 57.5 3.9 23 80-102 49-71 (311)
191 2chg_A Replication factor C sm 96.6 0.0012 4.2E-08 53.9 3.4 22 81-102 41-62 (226)
192 1xjc_A MOBB protein homolog; s 96.6 0.0014 4.9E-08 53.5 3.7 26 77-102 3-28 (169)
193 1sxj_A Activator 1 95 kDa subu 96.6 0.0011 3.8E-08 63.2 3.5 32 78-109 77-108 (516)
194 3co5_A Putative two-component 96.6 0.00035 1.2E-08 54.9 0.0 24 80-103 29-52 (143)
195 1l8q_A Chromosomal replication 96.6 0.0013 4.6E-08 58.3 3.7 36 78-113 37-77 (324)
196 3uk6_A RUVB-like 2; hexameric 96.5 0.0014 4.7E-08 59.0 3.8 27 78-104 70-96 (368)
197 1njg_A DNA polymerase III subu 96.5 0.0015 5.1E-08 54.0 3.6 26 79-104 46-71 (250)
198 1n0w_A DNA repair protein RAD5 96.5 0.0016 5.3E-08 54.9 3.4 29 72-101 19-47 (243)
199 2dhr_A FTSH; AAA+ protein, hex 96.5 0.002 6.8E-08 61.4 4.4 29 81-109 67-95 (499)
200 3cf2_A TER ATPase, transitiona 96.4 0.0012 4.1E-08 66.4 2.9 37 79-115 239-277 (806)
201 3m6a_A ATP-dependent protease 96.4 0.0016 5.3E-08 62.7 3.6 30 77-106 107-136 (543)
202 2zan_A Vacuolar protein sortin 96.4 0.0015 5E-08 61.2 3.3 36 79-114 168-206 (444)
203 2r44_A Uncharacterized protein 96.4 0.0012 4E-08 58.8 2.4 28 80-107 48-75 (331)
204 1vma_A Cell division protein F 96.4 0.0037 1.3E-07 55.8 5.6 27 76-102 102-128 (306)
205 1hqc_A RUVB; extended AAA-ATPa 96.4 0.0016 5.5E-08 57.4 3.2 29 79-107 39-67 (324)
206 3pxg_A Negative regulator of g 96.4 0.0022 7.4E-08 60.5 4.3 25 78-102 201-225 (468)
207 1c9k_A COBU, adenosylcobinamid 96.4 0.0014 5E-08 54.1 2.7 28 81-109 2-31 (180)
208 1upt_A ARL1, ADP-ribosylation 96.4 0.0027 9.3E-08 49.9 4.2 26 76-101 5-30 (171)
209 1m7b_A RND3/RHOE small GTP-bin 96.4 0.002 6.8E-08 51.9 3.4 27 75-101 4-30 (184)
210 3pvs_A Replication-associated 96.4 0.0019 6.5E-08 60.7 3.7 31 79-109 51-81 (447)
211 1z2a_A RAS-related protein RAB 96.4 0.0022 7.5E-08 50.2 3.5 26 76-101 3-28 (168)
212 3ihw_A Centg3; RAS, centaurin, 96.4 0.0024 8.1E-08 51.8 3.8 27 75-101 17-43 (184)
213 3b9q_A Chloroplast SRP recepto 96.4 0.004 1.4E-07 55.4 5.5 27 76-102 98-124 (302)
214 1htw_A HI0065; nucleotide-bind 96.4 0.0029 9.8E-08 51.0 4.2 27 76-102 31-57 (158)
215 2oil_A CATX-8, RAS-related pro 96.3 0.0024 8.1E-08 51.7 3.7 27 75-101 22-48 (193)
216 2orw_A Thymidine kinase; TMTK, 96.3 0.0025 8.6E-08 52.4 3.7 25 78-102 3-27 (184)
217 2bjv_A PSP operon transcriptio 96.3 0.0015 5.1E-08 56.2 2.4 24 80-103 31-54 (265)
218 2i3b_A HCR-ntpase, human cance 96.3 0.0021 7.2E-08 53.3 3.3 24 79-102 2-25 (189)
219 2hxs_A RAB-26, RAS-related pro 96.3 0.0029 9.8E-08 50.2 3.9 26 76-101 4-29 (178)
220 1np6_A Molybdopterin-guanine d 96.3 0.0028 9.5E-08 51.9 3.8 26 77-102 5-30 (174)
221 2v1u_A Cell division control p 96.3 0.0014 4.8E-08 58.7 2.2 25 78-102 44-68 (387)
222 2r2a_A Uncharacterized protein 96.3 0.0026 9E-08 53.2 3.7 25 76-100 3-27 (199)
223 2dr3_A UPF0273 protein PH0284; 96.3 0.0026 9E-08 53.5 3.7 29 72-101 18-46 (247)
224 2qby_B CDC6 homolog 3, cell di 96.3 0.0022 7.5E-08 57.7 3.4 25 78-102 45-69 (384)
225 2qgz_A Helicase loader, putati 96.3 0.0024 8.2E-08 56.9 3.5 38 78-115 152-195 (308)
226 2chq_A Replication factor C sm 96.3 0.0034 1.2E-07 54.8 4.5 23 80-102 40-62 (319)
227 2v9p_A Replication protein E1; 96.2 0.0029 9.8E-08 56.6 3.8 26 77-102 125-150 (305)
228 1sxj_E Activator 1 40 kDa subu 96.2 0.0031 1.1E-07 56.3 4.1 22 81-102 39-60 (354)
229 2qby_A CDC6 homolog 1, cell di 96.2 0.0024 8.2E-08 57.1 3.3 26 77-102 44-69 (386)
230 2h17_A ADP-ribosylation factor 96.2 0.0023 7.9E-08 51.4 2.9 28 74-101 17-44 (181)
231 3e70_C DPA, signal recognition 96.2 0.0036 1.2E-07 56.4 4.4 27 76-102 127-153 (328)
232 2a5j_A RAS-related protein RAB 96.2 0.0042 1.4E-07 50.3 4.4 27 75-101 18-44 (191)
233 1z06_A RAS-related protein RAB 96.2 0.003 1E-07 51.0 3.5 26 76-101 18-43 (189)
234 1r2q_A RAS-related protein RAB 96.2 0.0028 9.5E-08 49.6 3.2 26 76-101 4-29 (170)
235 2eyu_A Twitching motility prot 96.2 0.0039 1.3E-07 54.3 4.2 26 77-102 24-49 (261)
236 3te6_A Regulatory protein SIR3 96.2 0.0022 7.4E-08 57.7 2.6 26 77-102 44-69 (318)
237 3con_A GTPase NRAS; structural 96.1 0.0031 1.1E-07 50.8 3.4 25 77-101 20-44 (190)
238 3hu3_A Transitional endoplasmi 96.1 0.0028 9.5E-08 60.3 3.5 36 79-114 239-276 (489)
239 1g8p_A Magnesium-chelatase 38 96.1 0.002 6.9E-08 57.3 2.3 23 81-103 48-70 (350)
240 2fn4_A P23, RAS-related protei 96.1 0.004 1.4E-07 49.3 3.8 26 76-101 7-32 (181)
241 2y8e_A RAB-protein 6, GH09086P 96.1 0.0031 1.1E-07 49.8 3.2 26 75-100 11-36 (179)
242 2dyk_A GTP-binding protein; GT 96.1 0.0038 1.3E-07 48.5 3.7 23 79-101 2-24 (161)
243 1z08_A RAS-related protein RAB 96.1 0.0035 1.2E-07 49.2 3.3 26 76-101 4-29 (170)
244 1kao_A RAP2A; GTP-binding prot 96.1 0.0039 1.3E-07 48.4 3.5 24 78-101 3-26 (167)
245 3pxi_A Negative regulator of g 96.1 0.0039 1.3E-07 62.1 4.3 26 77-102 200-225 (758)
246 1sxj_B Activator 1 37 kDa subu 96.1 0.0033 1.1E-07 55.0 3.3 23 81-103 45-67 (323)
247 1rj9_A FTSY, signal recognitio 96.1 0.004 1.4E-07 55.5 3.9 26 77-102 101-126 (304)
248 1ypw_A Transitional endoplasmi 96.1 0.0025 8.6E-08 64.1 2.8 33 77-109 237-269 (806)
249 3llu_A RAS-related GTP-binding 96.0 0.0027 9.3E-08 51.8 2.6 29 74-102 16-44 (196)
250 1fzq_A ADP-ribosylation factor 96.0 0.0041 1.4E-07 50.1 3.6 27 75-101 13-39 (181)
251 1oix_A RAS-related protein RAB 96.0 0.004 1.4E-07 50.8 3.5 25 77-101 28-52 (191)
252 2bov_A RAla, RAS-related prote 96.0 0.0043 1.5E-07 50.4 3.8 26 76-101 12-37 (206)
253 1moz_A ARL1, ADP-ribosylation 96.0 0.003 1E-07 50.4 2.7 25 76-100 16-40 (183)
254 1cr0_A DNA primase/helicase; R 96.0 0.0042 1.4E-07 54.4 3.8 27 76-102 33-59 (296)
255 1sxj_C Activator 1 40 kDa subu 96.0 0.0035 1.2E-07 56.1 3.4 23 81-103 49-71 (340)
256 4bas_A ADP-ribosylation factor 96.0 0.0036 1.2E-07 50.6 3.2 27 74-100 13-39 (199)
257 3clv_A RAB5 protein, putative; 96.0 0.0059 2E-07 49.0 4.4 26 76-101 5-30 (208)
258 2ce2_X GTPase HRAS; signaling 96.0 0.0042 1.4E-07 48.1 3.4 24 78-101 3-26 (166)
259 2ged_A SR-beta, signal recogni 96.0 0.0046 1.6E-07 49.9 3.7 26 76-101 46-71 (193)
260 1z0j_A RAB-22, RAS-related pro 96.0 0.0042 1.4E-07 48.6 3.4 25 77-101 5-29 (170)
261 2gj8_A MNME, tRNA modification 96.0 0.0042 1.4E-07 49.8 3.4 25 77-101 3-27 (172)
262 1lw7_A Transcriptional regulat 96.0 0.0036 1.2E-07 56.8 3.4 28 78-105 170-197 (365)
263 2og2_A Putative signal recogni 96.0 0.0074 2.5E-07 55.1 5.4 27 76-102 155-181 (359)
264 2px0_A Flagellar biosynthesis 96.0 0.0052 1.8E-07 54.5 4.2 26 77-102 104-129 (296)
265 1iqp_A RFCS; clamp loader, ext 96.0 0.0045 1.5E-07 54.2 3.8 24 80-103 48-71 (327)
266 2wsm_A Hydrogenase expression/ 96.0 0.0052 1.8E-07 50.9 4.0 26 77-102 29-54 (221)
267 2f9l_A RAB11B, member RAS onco 96.0 0.0047 1.6E-07 50.5 3.6 25 77-101 4-28 (199)
268 3kkq_A RAS-related protein M-R 96.0 0.0053 1.8E-07 49.0 3.9 26 76-101 16-41 (183)
269 1ky3_A GTP-binding protein YPT 96.0 0.0047 1.6E-07 48.9 3.5 26 76-101 6-31 (182)
270 3tw8_B RAS-related protein RAB 96.0 0.004 1.4E-07 49.3 3.1 25 76-100 7-31 (181)
271 2efe_B Small GTP-binding prote 95.9 0.0044 1.5E-07 49.2 3.3 26 76-101 10-35 (181)
272 2wji_A Ferrous iron transport 95.9 0.0045 1.5E-07 49.0 3.4 24 78-101 3-26 (165)
273 2f1r_A Molybdopterin-guanine d 95.9 0.0022 7.5E-08 52.4 1.5 25 79-103 3-27 (171)
274 3u61_B DNA polymerase accessor 95.9 0.003 1E-07 55.9 2.5 31 79-109 49-79 (324)
275 3hr8_A Protein RECA; alpha and 95.9 0.0047 1.6E-07 56.3 3.9 30 72-102 56-85 (356)
276 3cf2_A TER ATPase, transitiona 95.9 0.0032 1.1E-07 63.3 2.9 39 79-117 512-552 (806)
277 2lkc_A Translation initiation 95.9 0.0056 1.9E-07 48.5 3.9 25 76-100 6-30 (178)
278 3tif_A Uncharacterized ABC tra 95.9 0.0039 1.3E-07 53.4 3.1 27 76-102 29-55 (235)
279 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0042 1.4E-07 56.0 3.4 37 72-109 118-156 (331)
280 2z4s_A Chromosomal replication 95.9 0.0049 1.7E-07 57.6 4.0 36 78-113 130-172 (440)
281 3bc1_A RAS-related protein RAB 95.9 0.0053 1.8E-07 49.1 3.7 26 76-101 9-34 (195)
282 2nzj_A GTP-binding protein REM 95.9 0.005 1.7E-07 48.5 3.5 25 77-101 3-27 (175)
283 3tkl_A RAS-related protein RAB 95.9 0.0054 1.8E-07 49.4 3.7 26 76-101 14-39 (196)
284 1c1y_A RAS-related protein RAP 95.9 0.0053 1.8E-07 47.8 3.5 24 78-101 3-26 (167)
285 1wms_A RAB-9, RAB9, RAS-relate 95.9 0.0049 1.7E-07 48.7 3.4 26 76-101 5-30 (177)
286 2il1_A RAB12; G-protein, GDP, 95.9 0.0046 1.6E-07 50.2 3.3 25 76-100 24-48 (192)
287 1z0f_A RAB14, member RAS oncog 95.9 0.0054 1.9E-07 48.4 3.6 26 76-101 13-38 (179)
288 1u8z_A RAS-related protein RAL 95.9 0.0057 1.9E-07 47.6 3.7 25 77-101 3-27 (168)
289 2zts_A Putative uncharacterize 95.9 0.0049 1.7E-07 51.8 3.5 28 72-100 25-52 (251)
290 2b8t_A Thymidine kinase; deoxy 95.9 0.006 2.1E-07 52.0 4.0 27 76-102 10-36 (223)
291 3dm5_A SRP54, signal recogniti 95.9 0.0097 3.3E-07 55.8 5.7 26 77-102 99-124 (443)
292 2a9k_A RAS-related protein RAL 95.8 0.0055 1.9E-07 48.7 3.5 26 76-101 16-41 (187)
293 2hf9_A Probable hydrogenase ni 95.8 0.0063 2.1E-07 50.6 4.0 26 77-102 37-62 (226)
294 1g16_A RAS-related protein SEC 95.8 0.0055 1.9E-07 47.9 3.4 24 78-101 3-26 (170)
295 2gf9_A RAS-related protein RAB 95.8 0.0068 2.3E-07 48.8 4.1 26 76-101 20-45 (189)
296 1pzn_A RAD51, DNA repair and r 95.8 0.0051 1.8E-07 55.7 3.6 30 72-102 126-155 (349)
297 1nrj_B SR-beta, signal recogni 95.8 0.0061 2.1E-07 50.3 3.8 27 76-102 10-36 (218)
298 2erx_A GTP-binding protein DI- 95.8 0.0055 1.9E-07 47.9 3.4 23 78-100 3-25 (172)
299 3pqc_A Probable GTP-binding pr 95.8 0.0074 2.5E-07 48.4 4.2 26 76-101 21-46 (195)
300 1ek0_A Protein (GTP-binding pr 95.8 0.0055 1.9E-07 47.8 3.3 24 78-101 3-26 (170)
301 2pcj_A ABC transporter, lipopr 95.8 0.0043 1.5E-07 52.6 2.8 27 76-102 28-54 (224)
302 2cbz_A Multidrug resistance-as 95.8 0.0048 1.6E-07 52.9 3.1 27 76-102 29-55 (237)
303 2qm8_A GTPase/ATPase; G protei 95.8 0.0067 2.3E-07 54.7 4.1 27 76-102 53-79 (337)
304 4dsu_A GTPase KRAS, isoform 2B 95.8 0.0058 2E-07 48.8 3.3 25 77-101 3-27 (189)
305 2g6b_A RAS-related protein RAB 95.8 0.0067 2.3E-07 48.1 3.7 26 76-101 8-33 (180)
306 1jr3_A DNA polymerase III subu 95.8 0.0057 1.9E-07 54.7 3.6 25 80-104 40-64 (373)
307 3c5c_A RAS-like protein 12; GD 95.8 0.0062 2.1E-07 49.3 3.5 26 76-101 19-44 (187)
308 2zej_A Dardarin, leucine-rich 95.8 0.0046 1.6E-07 49.9 2.7 22 79-100 3-24 (184)
309 1ypw_A Transitional endoplasmi 95.8 0.0029 9.8E-08 63.7 1.7 33 77-109 510-542 (806)
310 3t1o_A Gliding protein MGLA; G 95.7 0.0059 2E-07 49.0 3.3 28 76-103 12-39 (198)
311 2h57_A ADP-ribosylation factor 95.7 0.0047 1.6E-07 49.9 2.7 27 76-102 19-45 (190)
312 3oes_A GTPase rhebl1; small GT 95.7 0.006 2.1E-07 49.8 3.4 26 76-101 22-47 (201)
313 3cph_A RAS-related protein SEC 95.7 0.0068 2.3E-07 49.6 3.7 26 76-101 18-43 (213)
314 2fg5_A RAB-22B, RAS-related pr 95.7 0.0057 2E-07 49.6 3.2 26 76-101 21-46 (192)
315 3q72_A GTP-binding protein RAD 95.7 0.0059 2E-07 47.7 3.2 23 78-100 2-24 (166)
316 2p5s_A RAS and EF-hand domain 95.7 0.007 2.4E-07 49.3 3.7 26 76-101 26-51 (199)
317 1u0j_A DNA replication protein 95.7 0.0077 2.6E-07 52.8 4.2 25 79-103 105-129 (267)
318 1nlf_A Regulatory protein REPA 95.7 0.0056 1.9E-07 53.2 3.3 28 73-101 26-53 (279)
319 3q85_A GTP-binding protein REM 95.7 0.0067 2.3E-07 47.5 3.5 22 79-100 3-24 (169)
320 1r6b_X CLPA protein; AAA+, N-t 95.7 0.0056 1.9E-07 60.8 3.7 34 80-113 490-525 (758)
321 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0069 2.4E-07 48.2 3.6 25 77-101 4-28 (186)
322 3b85_A Phosphate starvation-in 95.7 0.0056 1.9E-07 51.5 3.1 25 77-101 21-45 (208)
323 1svi_A GTP-binding protein YSX 95.7 0.0071 2.4E-07 48.7 3.6 26 76-101 21-46 (195)
324 2atv_A RERG, RAS-like estrogen 95.7 0.0077 2.6E-07 48.9 3.8 26 76-101 26-51 (196)
325 1mv5_A LMRA, multidrug resista 95.7 0.0059 2E-07 52.4 3.2 27 76-102 26-52 (243)
326 1b0u_A Histidine permease; ABC 95.7 0.0055 1.9E-07 53.3 3.0 27 76-102 30-56 (262)
327 1zd9_A ADP-ribosylation factor 95.7 0.0069 2.4E-07 48.9 3.5 26 76-101 20-45 (188)
328 1pui_A ENGB, probable GTP-bind 95.7 0.0039 1.3E-07 51.1 1.9 26 76-101 24-49 (210)
329 3gfo_A Cobalt import ATP-bindi 95.6 0.0053 1.8E-07 53.9 2.8 27 76-102 32-58 (275)
330 2q3h_A RAS homolog gene family 95.6 0.0074 2.5E-07 49.0 3.6 28 74-101 16-43 (201)
331 2bme_A RAB4A, RAS-related prot 95.6 0.0068 2.3E-07 48.4 3.3 26 76-101 8-33 (186)
332 3t5g_A GTP-binding protein RHE 95.6 0.0065 2.2E-07 48.3 3.2 24 77-100 5-28 (181)
333 2qen_A Walker-type ATPase; unk 95.6 0.0062 2.1E-07 53.7 3.2 33 79-111 32-64 (350)
334 2yhs_A FTSY, cell division pro 95.6 0.008 2.7E-07 57.2 4.1 27 76-102 291-317 (503)
335 3bwd_D RAC-like GTP-binding pr 95.6 0.0082 2.8E-07 47.6 3.7 26 76-101 6-31 (182)
336 4g1u_C Hemin import ATP-bindin 95.6 0.0057 2E-07 53.4 2.9 27 76-102 35-61 (266)
337 1xx6_A Thymidine kinase; NESG, 95.6 0.0096 3.3E-07 49.4 4.1 27 76-102 6-32 (191)
338 2olj_A Amino acid ABC transpor 95.6 0.0061 2.1E-07 53.1 3.0 27 76-102 48-74 (263)
339 2d2e_A SUFC protein; ABC-ATPas 95.6 0.0072 2.5E-07 52.1 3.5 26 76-101 27-52 (250)
340 2www_A Methylmalonic aciduria 95.6 0.0087 3E-07 54.2 4.1 26 77-102 73-98 (349)
341 2ff7_A Alpha-hemolysin translo 95.6 0.006 2.1E-07 52.6 3.0 27 76-102 33-59 (247)
342 3p32_A Probable GTPase RV1496/ 95.6 0.0087 3E-07 54.2 4.1 26 77-102 78-103 (355)
343 2ewv_A Twitching motility prot 95.6 0.0087 3E-07 54.7 4.2 26 77-102 135-160 (372)
344 3pxi_A Negative regulator of g 95.6 0.0069 2.4E-07 60.3 3.7 36 80-115 523-563 (758)
345 3kl4_A SRP54, signal recogniti 95.6 0.0078 2.7E-07 56.3 3.8 26 77-102 96-121 (433)
346 2zr9_A Protein RECA, recombina 95.6 0.0074 2.5E-07 54.8 3.6 29 72-101 56-84 (349)
347 1g6h_A High-affinity branched- 95.6 0.0062 2.1E-07 52.7 3.0 27 76-102 31-57 (257)
348 2zu0_C Probable ATP-dependent 95.6 0.0077 2.6E-07 52.5 3.6 26 76-101 44-69 (267)
349 2ixe_A Antigen peptide transpo 95.6 0.0065 2.2E-07 53.1 3.1 27 76-102 43-69 (271)
350 2onk_A Molybdate/tungstate ABC 95.6 0.0071 2.4E-07 52.0 3.3 24 79-102 25-48 (240)
351 2pze_A Cystic fibrosis transme 95.5 0.0064 2.2E-07 51.7 2.9 27 76-102 32-58 (229)
352 2ghi_A Transport protein; mult 95.5 0.0066 2.3E-07 52.7 3.1 27 76-102 44-70 (260)
353 1v5w_A DMC1, meiotic recombina 95.5 0.0093 3.2E-07 53.8 4.1 29 72-101 117-145 (343)
354 1ji0_A ABC transporter; ATP bi 95.5 0.0065 2.2E-07 52.1 3.0 27 76-102 30-56 (240)
355 2xkx_A Disks large homolog 4; 95.5 0.16 5.5E-06 50.3 13.4 157 77-251 530-709 (721)
356 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.0053 1.8E-07 58.5 2.6 25 79-103 42-66 (500)
357 1yrb_A ATP(GTP)binding protein 95.5 0.011 3.6E-07 50.4 4.3 27 76-102 12-38 (262)
358 3dz8_A RAS-related protein RAB 95.5 0.0057 1.9E-07 49.5 2.4 27 76-102 21-47 (191)
359 2gno_A DNA polymerase III, gam 95.5 0.042 1.5E-06 48.7 8.3 25 78-102 18-42 (305)
360 1vg8_A RAS-related protein RAB 95.5 0.0087 3E-07 48.7 3.5 26 76-101 6-31 (207)
361 2ew1_A RAS-related protein RAB 95.5 0.0084 2.9E-07 49.4 3.5 26 76-101 24-49 (201)
362 1sgw_A Putative ABC transporte 95.5 0.0059 2E-07 51.6 2.5 27 76-102 33-59 (214)
363 1x3s_A RAS-related protein RAB 95.5 0.0083 2.8E-07 48.2 3.3 26 76-101 13-38 (195)
364 1m2o_B GTP-binding protein SAR 95.5 0.0082 2.8E-07 48.7 3.3 25 77-101 22-46 (190)
365 1ksh_A ARF-like protein 2; sma 95.5 0.009 3.1E-07 47.8 3.5 25 77-101 17-41 (186)
366 2b6h_A ADP-ribosylation factor 95.5 0.0092 3.1E-07 48.5 3.6 25 76-100 27-51 (192)
367 1r8s_A ADP-ribosylation factor 95.5 0.0096 3.3E-07 46.4 3.6 23 79-101 1-23 (164)
368 1vpl_A ABC transporter, ATP-bi 95.5 0.0071 2.4E-07 52.5 3.0 27 76-102 39-65 (256)
369 1zj6_A ADP-ribosylation factor 95.5 0.0098 3.4E-07 47.8 3.7 24 77-100 15-38 (187)
370 2gf0_A GTP-binding protein DI- 95.5 0.011 3.7E-07 47.7 3.9 24 77-100 7-30 (199)
371 3cbq_A GTP-binding protein REM 95.4 0.0071 2.4E-07 49.5 2.7 25 76-100 21-45 (195)
372 3lda_A DNA repair protein RAD5 95.4 0.0079 2.7E-07 55.7 3.3 28 72-100 173-200 (400)
373 2qi9_C Vitamin B12 import ATP- 95.4 0.0077 2.6E-07 52.0 2.9 27 76-102 24-50 (249)
374 2ihy_A ABC transporter, ATP-bi 95.4 0.0076 2.6E-07 53.0 2.9 27 76-102 45-71 (279)
375 2yz2_A Putative ABC transporte 95.4 0.0081 2.8E-07 52.3 3.1 27 76-102 31-57 (266)
376 3reg_A RHO-like small GTPase; 95.4 0.0098 3.3E-07 48.1 3.4 26 76-101 21-46 (194)
377 4dkx_A RAS-related protein RAB 95.4 0.011 3.7E-07 49.8 3.7 28 73-100 8-35 (216)
378 3tqf_A HPR(Ser) kinase; transf 95.3 0.0096 3.3E-07 49.0 3.2 33 77-110 15-47 (181)
379 2hup_A RAS-related protein RAB 95.3 0.0097 3.3E-07 48.8 3.3 26 76-101 27-52 (201)
380 2gco_A H9, RHO-related GTP-bin 95.3 0.0098 3.4E-07 48.6 3.3 26 76-101 23-48 (201)
381 2cxx_A Probable GTP-binding pr 95.3 0.009 3.1E-07 47.7 3.0 23 79-101 2-24 (190)
382 2gza_A Type IV secretion syste 95.3 0.0073 2.5E-07 55.0 2.7 27 77-103 174-200 (361)
383 2qu8_A Putative nucleolar GTP- 95.3 0.013 4.5E-07 48.9 4.1 25 77-101 28-52 (228)
384 1zu4_A FTSY; GTPase, signal re 95.3 0.013 4.3E-07 52.6 4.2 27 76-102 103-129 (320)
385 3jvv_A Twitching mobility prot 95.3 0.013 4.3E-07 53.4 4.2 25 78-102 123-147 (356)
386 3a1s_A Iron(II) transport prot 95.3 0.0094 3.2E-07 51.5 3.2 26 75-100 2-27 (258)
387 1gwn_A RHO-related GTP-binding 95.3 0.011 3.7E-07 48.9 3.4 26 76-101 26-51 (205)
388 2z43_A DNA repair and recombin 95.3 0.0094 3.2E-07 53.2 3.3 30 72-102 102-131 (324)
389 1ojl_A Transcriptional regulat 95.3 0.0073 2.5E-07 53.5 2.5 23 80-102 27-49 (304)
390 2fh5_B SR-beta, signal recogni 95.3 0.011 3.7E-07 48.6 3.4 25 77-101 6-30 (214)
391 1zbd_A Rabphilin-3A; G protein 95.3 0.012 4.2E-07 47.8 3.7 25 77-101 7-31 (203)
392 2nq2_C Hypothetical ABC transp 95.3 0.0086 2.9E-07 51.8 2.9 27 76-102 29-55 (253)
393 3lxx_A GTPase IMAP family memb 95.3 0.01 3.6E-07 50.1 3.4 26 76-101 27-52 (239)
394 2iwr_A Centaurin gamma 1; ANK 95.3 0.0083 2.8E-07 47.6 2.6 25 77-101 6-30 (178)
395 2o52_A RAS-related protein RAB 95.3 0.01 3.5E-07 48.5 3.2 25 76-100 23-47 (200)
396 2i1q_A DNA repair and recombin 95.3 0.011 3.6E-07 52.6 3.5 29 72-101 93-121 (322)
397 2j1l_A RHO-related GTP-binding 95.2 0.011 3.8E-07 48.9 3.3 25 76-100 32-56 (214)
398 3q3j_B RHO-related GTP-binding 95.2 0.013 4.4E-07 48.6 3.7 26 76-101 25-50 (214)
399 2aka_B Dynamin-1; fusion prote 95.2 0.015 5.2E-07 50.4 4.3 25 77-101 25-49 (299)
400 1zcb_A G alpha I/13; GTP-bindi 95.2 0.011 3.9E-07 53.8 3.6 28 76-103 31-58 (362)
401 2npi_A Protein CLP1; CLP1-PCF1 95.2 0.0096 3.3E-07 56.1 3.2 26 77-102 137-162 (460)
402 1u94_A RECA protein, recombina 95.2 0.012 4.1E-07 53.6 3.7 37 72-109 58-99 (356)
403 3k53_A Ferrous iron transport 95.2 0.012 4E-07 50.9 3.5 24 78-101 3-26 (271)
404 2p67_A LAO/AO transport system 95.2 0.014 4.7E-07 52.6 4.0 27 76-102 54-80 (341)
405 3cpj_B GTP-binding protein YPT 95.2 0.012 4.2E-07 48.9 3.4 26 76-101 11-36 (223)
406 2fv8_A H6, RHO-related GTP-bin 95.2 0.012 4E-07 48.3 3.3 25 77-101 24-48 (207)
407 3fvq_A Fe(3+) IONS import ATP- 95.1 0.012 4E-07 53.8 3.5 27 76-102 28-54 (359)
408 1qvr_A CLPB protein; coiled co 95.1 0.0078 2.7E-07 60.8 2.5 25 78-102 191-215 (854)
409 3sop_A Neuronal-specific septi 95.1 0.013 4.5E-07 51.1 3.6 24 79-102 3-26 (270)
410 2bcg_Y Protein YP2, GTP-bindin 95.1 0.012 4.2E-07 48.0 3.3 26 76-101 6-31 (206)
411 1f6b_A SAR1; gtpases, N-termin 95.1 0.012 4E-07 48.2 3.2 24 77-100 24-47 (198)
412 2v3c_C SRP54, signal recogniti 95.1 0.012 4E-07 55.1 3.4 25 78-102 99-123 (432)
413 3gj0_A GTP-binding nuclear pro 95.1 0.012 4.2E-07 48.7 3.2 29 74-102 11-40 (221)
414 2xtp_A GTPase IMAP family memb 95.1 0.013 4.5E-07 50.0 3.5 27 76-102 20-46 (260)
415 4gzl_A RAS-related C3 botulinu 95.1 0.014 5E-07 47.8 3.6 26 76-101 28-53 (204)
416 1p9r_A General secretion pathw 95.1 0.017 5.7E-07 53.8 4.3 27 77-103 166-192 (418)
417 2yyz_A Sugar ABC transporter, 95.1 0.013 4.5E-07 53.4 3.6 27 76-102 27-53 (359)
418 3tvt_A Disks large 1 tumor sup 95.1 0.24 8.1E-06 43.7 11.7 161 77-254 99-281 (292)
419 2f7s_A C25KG, RAS-related prot 95.0 0.014 4.8E-07 48.0 3.4 25 76-100 23-47 (217)
420 3rlf_A Maltose/maltodextrin im 95.0 0.013 4.6E-07 53.8 3.6 27 76-102 27-53 (381)
421 2atx_A Small GTP binding prote 95.0 0.014 4.6E-07 47.2 3.3 26 76-101 16-41 (194)
422 2it1_A 362AA long hypothetical 95.0 0.014 4.7E-07 53.3 3.6 27 76-102 27-53 (362)
423 1z47_A CYSA, putative ABC-tran 95.0 0.014 4.9E-07 53.1 3.5 27 76-102 39-65 (355)
424 2bbs_A Cystic fibrosis transme 94.9 0.012 4.2E-07 52.0 2.9 27 76-102 62-88 (290)
425 2j37_W Signal recognition part 94.9 0.017 5.7E-07 55.1 4.1 27 76-102 99-125 (504)
426 1a5t_A Delta prime, HOLB; zinc 94.9 0.019 6.5E-07 51.3 4.2 27 79-105 25-51 (334)
427 3tui_C Methionine import ATP-b 94.9 0.015 5.2E-07 53.2 3.6 27 76-102 52-78 (366)
428 2pjz_A Hypothetical protein ST 94.9 0.012 4.1E-07 51.3 2.8 25 78-102 30-54 (263)
429 2j0v_A RAC-like GTP-binding pr 94.9 0.018 6.1E-07 47.2 3.7 25 77-101 8-32 (212)
430 1v43_A Sugar-binding transport 94.9 0.015 5.2E-07 53.3 3.6 27 76-102 35-61 (372)
431 2fu5_C RAS-related protein RAB 94.9 0.0088 3E-07 47.7 1.8 24 77-100 7-30 (183)
432 3k1j_A LON protease, ATP-depen 94.9 0.013 4.3E-07 57.0 3.2 26 79-104 61-86 (604)
433 2x77_A ADP-ribosylation factor 94.9 0.012 4.1E-07 47.2 2.6 23 77-99 21-43 (189)
434 2r8r_A Sensor protein; KDPD, P 94.8 0.023 7.9E-07 48.6 4.2 25 78-102 6-30 (228)
435 1g29_1 MALK, maltose transport 94.8 0.016 5.6E-07 53.0 3.5 27 76-102 27-53 (372)
436 3nh6_A ATP-binding cassette SU 94.8 0.0093 3.2E-07 53.2 1.8 27 76-102 78-104 (306)
437 1qvr_A CLPB protein; coiled co 94.8 0.012 4.2E-07 59.4 2.8 23 80-102 590-612 (854)
438 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.011 3.6E-07 53.2 2.1 27 77-103 170-196 (330)
439 2cjw_A GTP-binding protein GEM 94.8 0.02 6.9E-07 46.6 3.7 25 77-101 5-29 (192)
440 3io5_A Recombination and repai 94.8 0.02 6.9E-07 51.5 3.9 28 72-101 24-51 (333)
441 2orv_A Thymidine kinase; TP4A 94.8 0.022 7.7E-07 48.8 4.0 29 74-102 15-43 (234)
442 1r6b_X CLPA protein; AAA+, N-t 94.7 0.019 6.4E-07 57.0 4.0 26 77-102 206-231 (758)
443 1j8m_F SRP54, signal recogniti 94.7 0.02 6.8E-07 50.7 3.8 25 78-102 98-122 (297)
444 1ls1_A Signal recognition part 94.7 0.023 7.7E-07 50.2 4.1 26 77-102 97-122 (295)
445 3d31_A Sulfate/molybdate ABC t 94.7 0.012 4.2E-07 53.4 2.3 27 76-102 24-50 (348)
446 2fna_A Conserved hypothetical 94.7 0.022 7.6E-07 50.1 4.0 30 80-109 32-63 (357)
447 3lxw_A GTPase IMAP family memb 94.7 0.019 6.6E-07 49.1 3.4 25 77-101 20-44 (247)
448 3gd7_A Fusion complex of cysti 94.7 0.019 6.4E-07 53.0 3.5 26 76-101 45-70 (390)
449 3bh0_A DNAB-like replicative h 94.6 0.022 7.6E-07 50.6 3.9 27 76-102 66-92 (315)
450 1w5s_A Origin recognition comp 94.6 0.019 6.4E-07 52.0 3.3 25 78-102 50-76 (412)
451 2rcn_A Probable GTPase ENGC; Y 94.6 0.019 6.6E-07 52.3 3.4 26 77-102 214-239 (358)
452 1jwy_B Dynamin A GTPase domain 94.6 0.029 1E-06 49.1 4.5 26 76-101 22-47 (315)
453 2g3y_A GTP-binding protein GEM 94.6 0.022 7.6E-07 47.6 3.5 24 77-100 36-59 (211)
454 1ega_A Protein (GTP-binding pr 94.5 0.02 6.8E-07 50.6 3.3 26 76-101 6-31 (301)
455 3b1v_A Ferrous iron uptake tra 94.5 0.023 7.9E-07 49.5 3.5 24 78-101 3-26 (272)
456 3ozx_A RNAse L inhibitor; ATP 94.5 0.021 7.2E-07 54.8 3.5 28 75-102 22-49 (538)
457 2j9r_A Thymidine kinase; TK1, 94.5 0.031 1.1E-06 47.3 4.1 27 76-102 26-52 (214)
458 1tf7_A KAIC; homohexamer, hexa 94.5 0.019 6.6E-07 54.6 3.2 22 77-98 38-59 (525)
459 4dhe_A Probable GTP-binding pr 94.5 0.012 4.1E-07 48.6 1.6 26 76-101 27-52 (223)
460 2yv5_A YJEQ protein; hydrolase 94.4 0.023 7.9E-07 50.3 3.5 25 77-102 164-188 (302)
461 1xp8_A RECA protein, recombina 94.4 0.024 8.2E-07 51.8 3.6 38 72-110 69-111 (366)
462 2oap_1 GSPE-2, type II secreti 94.4 0.017 6E-07 55.0 2.7 26 77-102 259-284 (511)
463 1oxx_K GLCV, glucose, ABC tran 94.4 0.013 4.4E-07 53.4 1.6 27 76-102 29-55 (353)
464 1nij_A Hypothetical protein YJ 94.3 0.023 8E-07 50.6 3.3 25 77-101 3-27 (318)
465 2r6a_A DNAB helicase, replicat 94.3 0.031 1.1E-06 52.2 4.2 25 77-101 202-226 (454)
466 3kta_A Chromosome segregation 94.3 0.03 1E-06 44.9 3.6 24 80-103 28-51 (182)
467 2xxa_A Signal recognition part 94.3 0.033 1.1E-06 52.0 4.3 26 77-102 99-124 (433)
468 1u0l_A Probable GTPase ENGC; p 94.3 0.021 7.1E-07 50.5 2.8 25 77-101 168-192 (301)
469 1tq4_A IIGP1, interferon-induc 94.2 0.027 9.2E-07 52.3 3.5 25 77-101 68-92 (413)
470 3iby_A Ferrous iron transport 94.2 0.025 8.6E-07 48.8 3.1 23 79-101 2-24 (256)
471 2yc2_C IFT27, small RAB-relate 94.2 0.0091 3.1E-07 48.4 0.3 26 76-101 18-43 (208)
472 3iev_A GTP-binding protein ERA 94.2 0.027 9.1E-07 49.9 3.3 27 75-101 7-33 (308)
473 3upu_A ATP-dependent DNA helic 94.2 0.028 9.5E-07 52.5 3.6 23 80-102 47-69 (459)
474 2qag_B Septin-6, protein NEDD5 94.2 0.026 8.8E-07 52.7 3.3 25 77-101 39-65 (427)
475 1ni3_A YCHF GTPase, YCHF GTP-b 94.1 0.036 1.2E-06 51.1 3.9 25 76-100 18-42 (392)
476 3o47_A ADP-ribosylation factor 94.0 0.012 4.1E-07 52.7 0.6 25 76-100 163-187 (329)
477 3f9v_A Minichromosome maintena 94.0 0.012 4E-07 57.3 0.5 25 80-104 329-353 (595)
478 4djt_A GTP-binding nuclear pro 94.0 0.013 4.6E-07 48.2 0.8 25 76-100 9-33 (218)
479 3i8s_A Ferrous iron transport 93.9 0.035 1.2E-06 48.2 3.5 25 77-101 2-26 (274)
480 2obl_A ESCN; ATPase, hydrolase 93.9 0.036 1.2E-06 50.1 3.7 28 76-103 69-96 (347)
481 3c5h_A Glucocorticoid receptor 93.9 0.053 1.8E-06 46.4 4.5 26 75-100 16-50 (255)
482 2ffh_A Protein (FFH); SRP54, s 93.9 0.042 1.4E-06 51.2 4.1 26 77-102 97-122 (425)
483 3th5_A RAS-related C3 botulinu 92.9 0.011 3.6E-07 48.4 0.0 25 76-100 28-52 (204)
484 3e1s_A Exodeoxyribonuclease V, 93.9 0.036 1.2E-06 53.6 3.7 25 78-102 204-228 (574)
485 2qnr_A Septin-2, protein NEDD5 93.7 0.032 1.1E-06 49.3 2.9 24 77-100 17-40 (301)
486 3r7w_A Gtpase1, GTP-binding pr 93.7 0.04 1.4E-06 48.7 3.5 25 77-101 2-26 (307)
487 1mky_A Probable GTP-binding pr 93.7 0.043 1.5E-06 51.0 3.8 25 77-101 179-203 (439)
488 2dpy_A FLII, flagellum-specifi 93.7 0.043 1.5E-06 51.3 3.8 28 76-103 155-182 (438)
489 2q6t_A DNAB replication FORK h 93.6 0.049 1.7E-06 50.7 4.1 25 77-101 199-223 (444)
490 1tf7_A KAIC; homohexamer, hexa 93.5 0.04 1.4E-06 52.5 3.4 26 77-102 280-305 (525)
491 1yqt_A RNAse L inhibitor; ATP- 93.5 0.042 1.4E-06 52.7 3.5 27 76-102 45-71 (538)
492 3b5x_A Lipid A export ATP-bind 93.5 0.041 1.4E-06 53.1 3.4 27 76-102 367-393 (582)
493 3b60_A Lipid A export ATP-bind 93.5 0.035 1.2E-06 53.6 2.9 28 76-103 367-394 (582)
494 1t9h_A YLOQ, probable GTPase E 93.4 0.016 5.5E-07 51.7 0.4 25 77-101 172-196 (307)
495 3l0i_B RAS-related protein RAB 93.4 0.014 4.7E-07 47.5 -0.0 24 76-99 31-54 (199)
496 3kfv_A Tight junction protein 93.4 0.81 2.8E-05 40.7 11.5 134 81-251 148-291 (308)
497 3j16_B RLI1P; ribosome recycli 93.4 0.045 1.5E-06 53.3 3.6 28 75-102 100-127 (608)
498 3cmu_A Protein RECA, recombina 93.4 0.11 3.6E-06 57.1 6.7 83 76-166 1425-1514(2050)
499 3vkw_A Replicase large subunit 93.4 0.19 6.6E-06 47.0 7.7 24 77-100 160-183 (446)
500 1ko7_A HPR kinase/phosphatase; 93.4 0.047 1.6E-06 48.8 3.4 33 77-110 143-175 (314)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=1e-38 Score=275.88 Aligned_cols=176 Identities=18% Similarity=0.333 Sum_probs=163.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
.++++|+|+|||||||+|+|+.|+++||++|||+||++|+++..++++|+.+++++.+|+++|++++..++.+++.+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~ 106 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVD 106 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999976432
Q ss_pred cCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-------------hHHHHHHHHHHHHHchHHHHHH
Q 024390 156 RGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELSKPLEDYY 221 (268)
Q Consensus 156 ~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~y 221 (268)
..+|||+|||||+..|++.|++. ..+++||+|+||++++.+|+ ++.+++|++.|++++.|+.+||
T Consensus 107 -~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y 185 (217)
T 3umf_A 107 -KNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHY 185 (217)
T ss_dssp -TCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred -cccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999864 68999999999999999998 4568999999999999999999
Q ss_pred HhCCcEEEEeCCCCHHHHHHHHHHHHHhhcc
Q 024390 222 QKQKKLLEFQVGSAPVETWQGLLTALHLQHI 252 (268)
Q Consensus 222 ~~~~~l~~Ida~~s~eev~~~I~~~L~~~~~ 252 (268)
++.++++.||+++++++||++|.+.|...++
T Consensus 186 ~~~~~l~~Idg~~~~eeV~~~I~~~l~k~G~ 216 (217)
T 3umf_A 186 KQQNKVITIDASGTVDAIFDKVNHELQKFGV 216 (217)
T ss_dssp HTTTCEEEEETTSCHHHHHHHHHHHHHTTTC
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999987554
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=2e-38 Score=272.08 Aligned_cols=167 Identities=29% Similarity=0.471 Sum_probs=155.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|||||||+|+|+.|+++||++|||+||++|+++..++++|+.+++++.+|+++|++++.+++.+++.+ .
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~ 75 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H 75 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999864 4
Q ss_pred cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhh---------------------------------h
Q 024390 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR---------------------------------G 200 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl---------------------------------~ 200 (268)
.|||+|||||+..|++.|+.. ..+++||+|+||++++++|+ +
T Consensus 76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~ 155 (206)
T 3sr0_A 76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKP 155 (206)
T ss_dssp SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSH
T ss_pred CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCH
Confidence 579999999999999998754 46899999999999999997 2
Q ss_pred HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 201 GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 201 ~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+.+++|++.|++++.|+.+||++.++++.|||++++++|+++|.++|.+.
T Consensus 156 e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e~ 205 (206)
T 3sr0_A 156 EVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGDG 205 (206)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccC
Confidence 46899999999999999999999999999999999999999999999753
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.6e-34 Score=251.00 Aligned_cols=170 Identities=23% Similarity=0.411 Sum_probs=141.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
..|++.|+|+|||||||+|+.|+++||++|||+|+++|+++..++++|+.+++++.+|+++|++++..++.+++.+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~-- 84 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEAD-- 84 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGG--
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcc--
Confidence 568899999999999999999999999999999999999998999999999999999999999999999999998763
Q ss_pred CccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh------------------------------------
Q 024390 157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR------------------------------------ 199 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl------------------------------------ 199 (268)
...|||||||||+..|++.|++. ..+|+||+|+||++++++|+
T Consensus 85 ~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R 164 (230)
T 3gmt_A 85 CANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQR 164 (230)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred cCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccC
Confidence 35799999999999999999865 57899999999999999997
Q ss_pred ----hHHHHHHHHHHHHHchHHHHHHHhC-----------CcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 200 ----GGSLKEKLEAYAELSKPLEDYYQKQ-----------KKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 200 ----~~~~~~rl~~y~~~~~~l~~~y~~~-----------~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
++.+++|++.|++++.|+.+||.+. ++++.|||++++++|+++|.++|.
T Consensus 165 ~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~ 228 (230)
T 3gmt_A 165 DDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQV 228 (230)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 3468999999999999999999973 789999999999999999998875
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.97 E-value=9.4e-30 Score=222.70 Aligned_cols=171 Identities=25% Similarity=0.450 Sum_probs=157.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
.++++|+|+|+|||||||+|+.|++++|++|+|+++++|+....+++.++.+++++.+|..+|++++..++..++...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-- 104 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTP-- 104 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSG--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcc--
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cCccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh------------------------------
Q 024390 156 RGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG------------------------------ 200 (268)
Q Consensus 156 ~~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~------------------------------ 200 (268)
..+.+||+||||++..|++.|++. ..+|.||+|++|++++++|+.
T Consensus 105 ~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 184 (243)
T 3tlx_A 105 QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184 (243)
T ss_dssp GGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred cccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence 347899999999999999888764 468999999999999999972
Q ss_pred ----------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 201 ----------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 201 ----------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
+.+++|+..|++++.++.+||.+.+.++.||++.++++|+++|.++|.
T Consensus 185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 367899999999999999999999999999999999999999999875
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.96 E-value=5.1e-29 Score=212.85 Aligned_cols=169 Identities=24% Similarity=0.464 Sum_probs=154.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|+|||||||+|+.|++++|++++++++++|+...++++.++.+.+.+..|..++++.+..++.+++... ..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~--~~~ 78 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKD--DCE 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSG--GGT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc--ccc
Confidence 579999999999999999999999999999999999999889999999999999999999999999999998865 247
Q ss_pred cEEEEcCCcCCHHHHHHHHhhc-----CCCeEEEEecCHHHHHhhhh---------------------------------
Q 024390 159 IGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCADNFIVTNRG--------------------------------- 200 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~~-----~~d~vV~Ld~~~e~l~~Rl~--------------------------------- 200 (268)
.+||+||||++..|++.+.+.. .+|.+|+|++|++++++|+.
T Consensus 79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3dl0_A 79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELY 158 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCcccccccccc
Confidence 8999999999999988887542 58999999999999999973
Q ss_pred -------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 201 -------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 201 -------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
+.+++|+..|.+...++.+||.+.+.++.||++.++++++++|.++|..
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 159 QRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp CCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999888899999999999999999999874
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.96 E-value=1.3e-28 Score=210.07 Aligned_cols=169 Identities=24% Similarity=0.442 Sum_probs=154.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|+|||||||+|+.|++++|++++++++++|+...++++.++.+.+.+..|..++++++..++.+++.... .+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~ 78 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDD--CQ 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--CC
Confidence 5799999999999999999999999999999999999988899999999999999999999999999999988652 46
Q ss_pred cEEEEcCCcCCHHHHHHHHhhc-----CCCeEEEEecCHHHHHhhhh---------------------------------
Q 024390 159 IGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCADNFIVTNRG--------------------------------- 200 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~~-----~~d~vV~Ld~~~e~l~~Rl~--------------------------------- 200 (268)
.+||+||||++..|++.+.+.. .+|.+|+|++|++++++|+.
T Consensus 79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3fb4_A 79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELY 158 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccc
Confidence 8999999999999988887542 48999999999999999973
Q ss_pred -------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 201 -------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 201 -------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
+.+++|+..|.+...++.+||.+.+.++.||+++++++++++|.++|..
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 159 QRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999988899999999999999999999874
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.96 E-value=1.8e-28 Score=210.51 Aligned_cols=170 Identities=23% Similarity=0.441 Sum_probs=149.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
.++++|+|+|+|||||||+|+.|++++|++++++|+++++..+.++++|+.+++++.+|+.++++.+.+++.+++...
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~-- 80 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLG-- 80 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc--
Confidence 367899999999999999999999999999999999999988888889999999999999999999999999888764
Q ss_pred cCccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhhH-----------------------------
Q 024390 156 RGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRGG----------------------------- 201 (268)
Q Consensus 156 ~~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~~----------------------------- 201 (268)
..+.+||+||||++..|++.++++ ..||++|+|++|++++.+|+..
T Consensus 81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 160 (217)
T 3be4_A 81 VCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGE 160 (217)
T ss_dssp TTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred ccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccc
Confidence 347889999999999888887642 3689999999999999999721
Q ss_pred -----------HHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHH
Q 024390 202 -----------SLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 202 -----------~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L 247 (268)
.+++|+..|.++..++.++|.+.+.++.||+++++++|+++|.+.|
T Consensus 161 ~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 161 PLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 3468899999999999999988778999999999999999998753
No 8
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.96 E-value=2.4e-28 Score=211.82 Aligned_cols=174 Identities=30% Similarity=0.511 Sum_probs=153.9
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (268)
+.++++|+|+|+|||||||+|+.|++++++.++++++++++....++++++.+++++..|..++++++..++.+++....
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 45678999999999999999999999999999999999999887788899999999999999999999999999887652
Q ss_pred ccCccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh-----------------------------
Q 024390 155 YRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG----------------------------- 200 (268)
Q Consensus 155 ~~~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~----------------------------- 200 (268)
.+.|||+||||++..|++.|.++ ..+|++|+|+++++++.+|+.
T Consensus 93 --~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~ 170 (233)
T 1ak2_A 93 --CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITG 170 (233)
T ss_dssp --GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTC
T ss_pred --ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccc
Confidence 46789999999999998877654 358999999999999999972
Q ss_pred -----------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 201 -----------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 201 -----------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+.+++|+..|.+...++.++|.+.+.++.||+++++++|+++|.+.|...
T Consensus 171 ~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 171 EPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp CBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 13678899999999999999987778999999999999999999998753
No 9
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.96 E-value=4.5e-28 Score=207.89 Aligned_cols=171 Identities=26% Similarity=0.513 Sum_probs=151.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHH-cCC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE-DGY 154 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~-~~~ 154 (268)
+++++|+|+|+|||||||+|+.|++++|+.++++|+++++..+.+++.++.+++++..|+.++++.+..++.+++. ..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~- 80 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP- 80 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc-
Confidence 4678999999999999999999999999999999999999888889999999999999999999999999988887 32
Q ss_pred ccCccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh-----------------------------
Q 024390 155 YRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG----------------------------- 200 (268)
Q Consensus 155 ~~~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~----------------------------- 200 (268)
..+.+||+||||++..|++.++++ ..||++|+|+++++++++|+.
T Consensus 81 -~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~ 159 (220)
T 1aky_A 81 -ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTG 159 (220)
T ss_dssp -GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTC
T ss_pred -ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccc
Confidence 246789999999999888776543 468999999999999999972
Q ss_pred -----------HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 201 -----------GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 201 -----------~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
+.+++|++.|.+...++.++|.+.+.++.||+++++++|+++|.+.|.
T Consensus 160 ~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 160 EALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp CBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 135678999999999999999877789999999999999999999875
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.95 E-value=1.5e-27 Score=203.89 Aligned_cols=167 Identities=26% Similarity=0.491 Sum_probs=148.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|+|||||||+|+.|++++|+.++++++++|+.+..+++.++.+++++..|..+|++++..++.+++.... ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--~~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED--CR 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG--GG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc--cC
Confidence 5799999999999999999999999999999999999877778889999999999999999999999998887642 35
Q ss_pred cEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhh-------------------------------------
Q 024390 159 IGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG------------------------------------- 200 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~------------------------------------- 200 (268)
.+||+||||++..|++.|... ..||++|+|+++++++++|+.
T Consensus 79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~d 158 (214)
T 1e4v_A 79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKD 158 (214)
T ss_dssp GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTT
T ss_pred CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCC
Confidence 789999999999998887654 468999999999999999962
Q ss_pred ---HHHHHHHHHHHHHchHHHHHHHhC-----CcEEEEeCCCCHHHHHHHHHHHH
Q 024390 201 ---GSLKEKLEAYAELSKPLEDYYQKQ-----KKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 201 ---~~~~~rl~~y~~~~~~l~~~y~~~-----~~l~~Ida~~s~eev~~~I~~~L 247 (268)
+.+++|++.|.+...++.++|.+. +.++.||+++++++|+++|++.|
T Consensus 159 d~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 159 DQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp CSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 246889999999999999999864 57899999999999999999876
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.95 E-value=4.8e-27 Score=202.63 Aligned_cols=166 Identities=19% Similarity=0.330 Sum_probs=148.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
|+|+|+|+|||||||+|+.|++++|++++++|+++|+....+++.++.+++++.+|+.++++.+..++.+++... . +
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~-g 77 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESK--G-K 77 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH--C-T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcc--c-C
Confidence 579999999999999999999999999999999999988888899999999999999999999999998888763 2 6
Q ss_pred cEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh---------------------------------
Q 024390 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG--------------------------------- 200 (268)
Q Consensus 159 ~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~--------------------------------- 200 (268)
.+||+||||++..|++.+.++ ..||++|+|++|++++++|+.
T Consensus 78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~ 157 (223)
T 2xb4_A 78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGA 157 (223)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCB
T ss_pred CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccc
Confidence 789999999999888888653 368999999999999999971
Q ss_pred ---------H-HHHHHHHHHHHHchHHHH---HHHh-----CCcEEEEeCCCCHHHHHHHHHHHH
Q 024390 201 ---------G-SLKEKLEAYAELSKPLED---YYQK-----QKKLLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 201 ---------~-~~~~rl~~y~~~~~~l~~---~y~~-----~~~l~~Ida~~s~eev~~~I~~~L 247 (268)
+ .+++|+..|++.+.|+.+ +|.+ .+.++.||+++++++|+++|++.|
T Consensus 158 l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 158 LSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp EECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 2 567788899999999999 9986 567899999999999999999876
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.95 E-value=3e-26 Score=197.61 Aligned_cols=170 Identities=23% Similarity=0.417 Sum_probs=150.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++++|+|+|+|||||||+|+.|++++|+.++++|++++.....++++|+.+++++..|..++++....++.+++.+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~--- 82 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL--- 82 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC---
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc---
Confidence 56789999999999999999999999999999999999988778889999999999999999988888888887752
Q ss_pred CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh------------------------------------
Q 024390 157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG------------------------------------ 200 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~------------------------------------ 200 (268)
.+.+||+||||++..|++.++....+|++|+|+++.+++++|+.
T Consensus 83 ~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~ 162 (227)
T 1zd8_A 83 TQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRE 162 (227)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred cCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCC
Confidence 35689999999999898888877789999999999999998862
Q ss_pred ----HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 201 ----GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 201 ----~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+.+++|+..|.+...++.++|.+.+.++.||++ ++++|+++|.++|...
T Consensus 163 ~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~ 215 (227)
T 1zd8_A 163 DDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTK 215 (227)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhh
Confidence 245788899999999999999877789999998 9999999999999754
No 13
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.94 E-value=1.2e-25 Score=188.18 Aligned_cols=173 Identities=17% Similarity=0.338 Sum_probs=149.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
.++++|+|+|+|||||||+|+.|++++|+++++++++++.....+++.++.+++.+..|+.++.+....++.+.+....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~- 85 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV- 85 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc-
Confidence 3567899999999999999999999999999999999999877778899999999999999999888888877776432
Q ss_pred cCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhhH-------------HHHHHHHHHHHHchHHHHHH
Q 024390 156 RGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGG-------------SLKEKLEAYAELSKPLEDYY 221 (268)
Q Consensus 156 ~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~~-------------~~~~rl~~y~~~~~~l~~~y 221 (268)
..+.+||+||+|++..|++.+... ..++++|+|++|++++.+|+.. .+++|+..|.....++.++|
T Consensus 86 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 165 (196)
T 2c95_A 86 NTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFY 165 (196)
T ss_dssp TTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 246789999999999888777653 5789999999999999999832 34678888888888888888
Q ss_pred HhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 222 QKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 222 ~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
...+.++.||++.++++++++|.+.+..
T Consensus 166 ~~~~~~~~Id~~~~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 166 EKRGIVRKVNAEGSVDSVFSQVCTHLDA 193 (196)
T ss_dssp HHHTCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred HhcCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 8767788899999999999999998864
No 14
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.94 E-value=1.4e-25 Score=189.56 Aligned_cols=175 Identities=21% Similarity=0.392 Sum_probs=146.3
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc-CCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcC
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~-~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (268)
+.++++|+|+|+|||||||+|+.|++++|+.++++|+++++.. ..++..++.+++++.+|+..+++....++.+.+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999999999864 456778889999999999888887777777666432
Q ss_pred CccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhhH-------------HHHHHHHHHHHHchHHHH
Q 024390 154 YYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGG-------------SLKEKLEAYAELSKPLED 219 (268)
Q Consensus 154 ~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~~-------------~~~~rl~~y~~~~~~l~~ 219 (268)
...+..+||+||+|++..++..++.. ..+|++|+|++|++++++|+.. .+++|+..|.+...++.+
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~ 171 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIE 171 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 11123689999999999988888764 4689999999999999999832 345678888888888888
Q ss_pred HHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 220 YYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 220 ~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
+|...+.++.||++.++++++++|.+.+..
T Consensus 172 ~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 172 YFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 888777888899999999999999998864
No 15
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.94 E-value=6e-26 Score=191.88 Aligned_cols=170 Identities=26% Similarity=0.472 Sum_probs=146.0
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (268)
+.++++|+|+|+|||||||+|+.|++++|++++++++++++....+++.++.+++.+.+|+.++++....++.+++...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~- 95 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP- 95 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc-
Confidence 3567899999999999999999999999999999999999987778889999999999999999998888888887653
Q ss_pred ccCccEEEEcCCcCCHHHHHHHHhh-----cCCCeEEEEecCHHHHHhhhh---------HHHHHHHHHHHHHchHHHHH
Q 024390 155 YRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG---------GSLKEKLEAYAELSKPLEDY 220 (268)
Q Consensus 155 ~~~~~g~IlDGfPr~~~qa~~l~~~-----~~~d~vV~Ld~~~e~l~~Rl~---------~~~~~rl~~y~~~~~~l~~~ 220 (268)
..+.+||+||+|++..|.+.++.+ ..++++|+|++|++++.+|+. +.+++|+..|.....++.++
T Consensus 96 -~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~ 174 (201)
T 2cdn_A 96 -DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEY 174 (201)
T ss_dssp -GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHH
T ss_pred -cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHH
Confidence 246789999999999888777653 248999999999999999983 34667888888888888787
Q ss_pred HHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 221 YQKQKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 221 y~~~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
| ...++.||++.++++++++|.+.|.
T Consensus 175 ~--~~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 175 Y--RDQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp T--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred h--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 7 3468889999999999999998764
No 16
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.94 E-value=5.1e-26 Score=195.33 Aligned_cols=171 Identities=22% Similarity=0.344 Sum_probs=146.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++++|+|+|+|||||||+++.|++++++.++++|+++++....+++.|+.+++++.+|+.+|++....++.+++....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 82 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA- 82 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc-
Confidence 5678999999999999999999999999999999999998777888999999999999999999888888887764321
Q ss_pred CccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhh-----------------------------------
Q 024390 157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG----------------------------------- 200 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~----------------------------------- 200 (268)
...+||+||||++..|++.+... ..|+++|+|+++.+++.+|+.
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~ 162 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDT 162 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCC
T ss_pred cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCC
Confidence 25689999999999888888754 468999999999999999962
Q ss_pred -HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 201 -GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 201 -~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+.+++|+..|..+..++.++|.. .++.||+++++++++++|.+.|...
T Consensus 163 ~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 163 EEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSI 211 (222)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhh
Confidence 24677888888888888887753 5889999999999999999999753
No 17
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.94 E-value=3.8e-25 Score=185.45 Aligned_cols=173 Identities=24% Similarity=0.424 Sum_probs=146.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++++|+|+|+|||||||+|+.|++++|+.+++++++++.....+++.+..+.+.+..|+.++++....++.+.+.... .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~ 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL-G 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc-c
Confidence 457899999999999999999999999999999999998876677889999999999999999888888877765432 2
Q ss_pred CccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhh-------------HHHHHHHHHHHHHchHHHHHHH
Q 024390 157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG-------------GSLKEKLEAYAELSKPLEDYYQ 222 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~-------------~~~~~rl~~y~~~~~~l~~~y~ 222 (268)
.+.+||+||+|.+..|++.+.+. ..+|++|+|++|++++.+|+. +.+++|+..|.....++.++|.
T Consensus 90 ~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 169 (199)
T 2bwj_A 90 DTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYE 169 (199)
T ss_dssp SCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999888777653 378999999999999999972 3456777778888888888887
Q ss_pred hCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 223 KQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 223 ~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
..+.++.||++.++++++++|.+.+...
T Consensus 170 ~~~~~~~id~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 170 TKTQLHKINAEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 7667788999999999999999988753
No 18
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.94 E-value=3.2e-25 Score=184.43 Aligned_cols=166 Identities=28% Similarity=0.448 Sum_probs=140.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
.++++|+|+|+|||||||+++.|++++|++++++|+++++.+..+++.++.+++.+.+|...+++....++.+.+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~---- 77 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA---- 77 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----
Confidence 3678999999999999999999999999999999999999877788899999999999999998888877776553
Q ss_pred cCccEEEEcCCcCCHHHHHHHHhhc-----CCCeEEEEecCHHHHHhhhhH-------------HHHHHHHHHHHHchHH
Q 024390 156 RGEIGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCADNFIVTNRGG-------------SLKEKLEAYAELSKPL 217 (268)
Q Consensus 156 ~~~~g~IlDGfPr~~~qa~~l~~~~-----~~d~vV~Ld~~~e~l~~Rl~~-------------~~~~rl~~y~~~~~~l 217 (268)
.++|+||+|++..|...++.+. .++.+|+|++|++++.+|+.. .+++|+..|.....++
T Consensus 78 ---~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l 154 (186)
T 3cm0_A 78 ---ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPL 154 (186)
T ss_dssp ---SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2499999999988877665431 378999999999999999732 3456778888887888
Q ss_pred HHHHHhCCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 218 EDYYQKQKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 218 ~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
.++|...+.++.||++.++++++++|.+.+.
T Consensus 155 ~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 155 VGYYEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp HHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 8888876678899999999999999998764
No 19
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.94 E-value=8.7e-25 Score=181.91 Aligned_cols=171 Identities=18% Similarity=0.294 Sum_probs=147.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++++|+|+|+|||||||+|+.|++++|+.++++|+++++....+++.++.+.+.+..|...+++....++...+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--- 81 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--- 81 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence 45789999999999999999999999999999999999887677888999999999999999888888888887653
Q ss_pred CccEEEEcCCcCCHHHHHHHHhh-c---CCCeEEEEecCHHHHHhhhh-------------HHHHHHHHHHHHHchHHHH
Q 024390 157 GEIGFILDGLPRSRIQAEILDQL-A---EIDLVVNFKCADNFIVTNRG-------------GSLKEKLEAYAELSKPLED 219 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~-~---~~d~vV~Ld~~~e~l~~Rl~-------------~~~~~rl~~y~~~~~~l~~ 219 (268)
.+.++|+||+|++..+.+.+... . .+|++|+|++|++++.+|+. +.+++|+..|.+...++.+
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~ 161 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVID 161 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 46789999999999887777543 2 58899999999999999983 3456778888888888888
Q ss_pred HHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 220 YYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 220 ~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+|...+.++.||++.++++++++|.+.+...
T Consensus 162 ~~~~~~~~~~id~~~~~~~~~~~i~~~l~~~ 192 (194)
T 1qf9_A 162 HYNKFDKVKIIPANRDVNEVYNDVENLFKSM 192 (194)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred HHHhCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 8887777888999999999999999998753
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.93 E-value=1e-24 Score=181.77 Aligned_cols=173 Identities=18% Similarity=0.390 Sum_probs=142.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc-CCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC-
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY- 154 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~-~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~- 154 (268)
++++|+|+|+|||||||+|+.|++++|++++++|++++... +.++.+++.+++.+..|...++++...++..++....
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 45789999999999999999999999999999999998865 3456788889999989998888877776665554311
Q ss_pred -ccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhh-------------HHHHHHHHHHHHHchH
Q 024390 155 -YRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG-------------GSLKEKLEAYAELSKP 216 (268)
Q Consensus 155 -~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~-------------~~~~~rl~~y~~~~~~ 216 (268)
...+.+||+||+|++..+.+.+... ..++++|+|++|++++++|+. +.+++|+..|.+...+
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP 161 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence 1236789999999998877655432 257899999999999999983 2356788999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 217 LEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 217 l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
+.++|.+.+.++.||++.++++++++|.+.+..
T Consensus 162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 999998877788999999999999999998875
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.88 E-value=7.8e-21 Score=165.61 Aligned_cols=170 Identities=19% Similarity=0.390 Sum_probs=144.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++.+|+|+|++||||||+++.|++++|+.+++.|++++.....+...+..+...++++...|+..+.+.+...+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~--- 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR--- 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---
Confidence 35689999999999999999999999999999999998865555677888888888888889888888887766542
Q ss_pred CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh------------------------------------
Q 024390 157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG------------------------------------ 200 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~------------------------------------ 200 (268)
.+.+|++||+|++..+++.+.....++++|+|+++++++++|+.
T Consensus 103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld 182 (246)
T 2bbw_A 103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE 182 (246)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCG
T ss_pred CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCC
Confidence 35679999999988777777766678999999999999987751
Q ss_pred ----HHHHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 201 ----GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 201 ----~~~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+.+.+++..|.++..++.++|.+.+.++.||++.+ ++|+++|.+.+...
T Consensus 183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~ 235 (246)
T 2bbw_A 183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNK 235 (246)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhh
Confidence 24577888999998999999998888999999988 99999999999764
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.77 E-value=1.1e-17 Score=135.90 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCC----ChhHHHHHHHHhc-cCcccHHHHHHHHHHHHHcC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR----SSLHKQIANAVNR-GEVVSEDIIFGLLSKRLEDG 153 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~----~~~g~~i~~~l~~-G~~ip~~~~~~ll~~~l~~~ 153 (268)
+.|+|+|+|||||||+|+.| +.+|+.++++++++++..... ...+......... |. +....++.+.+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~- 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGD----GVVARLCVEELGT- 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCT----THHHHHHHHHHCS-
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCH----HHHHHHHHHHHHh-
Confidence 67999999999999999999 999999999999999865321 2223333333332 32 3344555555533
Q ss_pred CccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhhH-----------HHHHHHHHHHHHchHHHHHH
Q 024390 154 YYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGG-----------SLKEKLEAYAELSKPLEDYY 221 (268)
Q Consensus 154 ~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~~-----------~~~~rl~~y~~~~~~l~~~y 221 (268)
..+..||+||+ ++..+.+.+.+. ..++++|+|++|.+++.+|+.. .+.+|+.... ..++..++
T Consensus 76 --~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~--~~~~~~~~ 150 (179)
T 3lw7_A 76 --SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREEL--KLGIGEVI 150 (179)
T ss_dssp --CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHH--HHTHHHHH
T ss_pred --cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhh--ccChHhHH
Confidence 24678999999 888888888775 4678999999999999999832 2223321111 11133333
Q ss_pred HhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 222 QKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 222 ~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
...+ +.||++.+++++.++|.+++..
T Consensus 151 ~~ad--~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 151 AMAD--YIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp HTCS--EEEECCSCHHHHHHHHHHHHHH
T ss_pred HhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 3222 4567777999999999998874
No 23
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.73 E-value=5e-17 Score=140.77 Aligned_cols=168 Identities=11% Similarity=0.057 Sum_probs=110.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHH-HHHHHHHHHcCC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII-FGLLSKRLEDGY 154 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~-~~ll~~~l~~~~ 154 (268)
.+++.|+|+|+|||||||+++.|++.++. .++ ++....+.+++.++.+++++.+|...++... .-...++.....
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~---~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~ 99 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYD---VIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV 99 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSC---EEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCC---ceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999974 322 2223356678899999999988875433322 222233333210
Q ss_pred ------ccCccEEEEc----------CCcCCHHHH--HHHHhh----cCCCeEEEEecCHHHHHhhhhHHH--HHH----
Q 024390 155 ------YRGEIGFILD----------GLPRSRIQA--EILDQL----AEIDLVVNFKCADNFIVTNRGGSL--KEK---- 206 (268)
Q Consensus 155 ------~~~~~g~IlD----------GfPr~~~qa--~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~--~~r---- 206 (268)
...+..+|+| |+|++..+. +.++.+ ..||++|+|++|++++.+|+..+- ..|
T Consensus 100 ~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~ 179 (229)
T 4eaq_A 100 LKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE 179 (229)
T ss_dssp CCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHH
T ss_pred HHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhh
Confidence 1245678999 999875443 344432 479999999999999999984321 111
Q ss_pred HHHHHHHchHHHHHHHh-----CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 207 LEAYAELSKPLEDYYQK-----QKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 207 l~~y~~~~~~l~~~y~~-----~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
-..|.+. +.+.|.+ .+.++.||++.++++++++|.+.|...
T Consensus 180 ~~~~~~r---v~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~ 225 (229)
T 4eaq_A 180 DLKFHEK---VIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 225 (229)
T ss_dssp HHHHHHH---HHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHH---HHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1122222 2222221 236889999999999999999998753
No 24
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.73 E-value=9.5e-17 Score=133.32 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHH-----------H
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF-----------G 144 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~-----------~ 144 (268)
|+|+|+|+|||||||+++.|++++ |++++++++ +.++..++.+++.+.+|+..++.... +
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 999998852 34566788888888888665553221 1
Q ss_pred HHHHHHHcCCccCccEEEEc----------CCcCCH--HHHHHHHhh----cCCCeEEEEecCHHHHHhhhhH-------
Q 024390 145 LLSKRLEDGYYRGEIGFILD----------GLPRSR--IQAEILDQL----AEIDLVVNFKCADNFIVTNRGG------- 201 (268)
Q Consensus 145 ll~~~l~~~~~~~~~g~IlD----------GfPr~~--~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~------- 201 (268)
++...+. .+..+|+| |+|+.. .+...+..+ ..+|++|+|+||++++++|+..
T Consensus 75 ~i~~~l~-----~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~ 149 (195)
T 2pbr_A 75 KIIPDLK-----RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENK 149 (195)
T ss_dssp THHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCH
T ss_pred HHHHHHh-----CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchH
Confidence 1222222 34567777 776643 244333321 2689999999999999999832
Q ss_pred HHHHHH-HHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 202 SLKEKL-EAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 202 ~~~~rl-~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
.+.+|+ ..|.+. ...| +.++.||++.++++++++|.+.+..
T Consensus 150 ~~~~~~~~~~~~~----~~~~---~~~~~Id~~~~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 150 EFLEKVRKGFLEL----AKEE---ENVVVIDASGEEEEVFKEILRALSG 191 (195)
T ss_dssp HHHHHHHHHHHHH----HHHS---TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----HhhC---CCEEEEECCCCHHHHHHHHHHHHHH
Confidence 222333 223221 1122 4678899999999999999998864
No 25
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=9.6e-17 Score=135.29 Aligned_cols=154 Identities=14% Similarity=0.166 Sum_probs=101.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
++..|+|+|+|||||||+++.|++.+|+.+++++++++.... ..+.+.+. .|.....+....++....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g------~~i~~~~~~~~~~~~~~~e~~~l~~l~----- 92 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH------KTVGELFTERGEAGFRELERNMLHEVA----- 92 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC------CcHHHHHHhcChHHHHHHHHHHHHHHh-----
Confidence 566899999999999999999999999999999998877532 12333332 232222333333443322
Q ss_pred cCccEEEEc---CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh-H-------------HHHHHHHHHHHHchHHH
Q 024390 156 RGEIGFILD---GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-G-------------SLKEKLEAYAELSKPLE 218 (268)
Q Consensus 156 ~~~~g~IlD---GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-~-------------~~~~rl~~y~~~~~~l~ 218 (268)
...++|++ |.+......+.+.+ ++.+|+|++|.+++.+|+. . .+.+++..+.+ ...
T Consensus 93 -~~~~~vi~~ggg~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~---~r~ 165 (199)
T 3vaa_A 93 -EFENVVISTGGGAPCFYDNMEFMNR---TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALE---KRA 165 (199)
T ss_dssp -TCSSEEEECCTTGGGSTTHHHHHHH---HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHH---HHH
T ss_pred -hcCCcEEECCCcEEccHHHHHHHHc---CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHH---HHH
Confidence 23567777 55655444444443 6889999999999999985 1 11233333333 334
Q ss_pred HHHHhCCcEEEEeCCC-CHHHHHHHHHHHHHhh
Q 024390 219 DYYQKQKKLLEFQVGS-APVETWQGLLTALHLQ 250 (268)
Q Consensus 219 ~~y~~~~~l~~Ida~~-s~eev~~~I~~~L~~~ 250 (268)
.+|.. .-+.||++. ++++++++|.+.|...
T Consensus 166 ~~y~~--ad~~Idt~~~s~ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 166 PFYTQ--AQYIFNADELEDRWQIESSVQRLQEL 196 (199)
T ss_dssp HHHTT--SSEEEECCCCSSHHHHHHHHHHHHHH
T ss_pred HHHhh--CCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 45654 235677665 9999999999998754
No 26
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.71 E-value=2.7e-17 Score=142.59 Aligned_cols=174 Identities=15% Similarity=0.122 Sum_probs=108.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh-HHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcC-
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG- 153 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~-dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~- 153 (268)
.+++.|+|+|++||||||+++.|+++++..+++++ +++....+.++++|+.+++++.+|...|.....-+..++....
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~ 102 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLA 102 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999865443333 1111123567889999999999886555443333333333211
Q ss_pred -----CccCccEEEEcCCcCC------------HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhH-----HHHHHH
Q 024390 154 -----YYRGEIGFILDGLPRS------------RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGG-----SLKEKL 207 (268)
Q Consensus 154 -----~~~~~~g~IlDGfPr~------------~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~-----~~~~rl 207 (268)
....+..+|.|.|..+ ..+...++.+ ..||++|+|++|++++.+|+.. +++..-
T Consensus 103 ~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E~~~ 182 (227)
T 3v9p_A 103 LVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFESES 182 (227)
T ss_dssp HTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC---CCHH
T ss_pred HHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccchhhhh
Confidence 0123566788866433 2233333332 5799999999999999999842 222211
Q ss_pred HHHHHHchHH-HHHHHh-CCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 208 EAYAELSKPL-EDYYQK-QKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 208 ~~y~~~~~~l-~~~y~~-~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
..|.+..... ..+... .+.+++||+++++++|.++|.+.|..
T Consensus 183 ~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 183 DAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 2333332221 122222 34699999999999999999998864
No 27
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.70 E-value=1.4e-15 Score=129.79 Aligned_cols=167 Identities=11% Similarity=0.030 Sum_probs=105.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHH-HHHHHHc--
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL-LSKRLED-- 152 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~--~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~l-l~~~l~~-- 152 (268)
++.|+|.|++||||||+++.|++++. ..++- ...+.+++.|+.+++.+.++..++.....-+ ..+|.++
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~------~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM------TREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV 75 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE------EESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEE------eeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999983 33332 2346678999999999988876654332111 1122111
Q ss_pred ----CCccCccEEEEcCCc----------CC--HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH------HHHH
Q 024390 153 ----GYYRGEIGFILDGLP----------RS--RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS------LKEK 206 (268)
Q Consensus 153 ----~~~~~~~g~IlDGfP----------r~--~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~------~~~r 206 (268)
.....+..+|.|.|. +. ..+...+..+ ..||++|+|++|++++.+|+..+ ++..
T Consensus 76 ~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~ 155 (205)
T 4hlc_A 76 LKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE 155 (205)
T ss_dssp HTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHH
T ss_pred HHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhcc
Confidence 001134556667543 22 2233334332 47999999999999999998322 1121
Q ss_pred HHHHHHHchHH-HHHHHh-CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 207 LEAYAELSKPL-EDYYQK-QKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 207 l~~y~~~~~~l-~~~y~~-~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
-..|.+.+... .+.... .++++.||+++++++|.++|.+.|...
T Consensus 156 ~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~ 201 (205)
T 4hlc_A 156 DLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 201 (205)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 22344333221 222222 346999999999999999999988753
No 28
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.69 E-value=8.6e-17 Score=135.81 Aligned_cols=168 Identities=13% Similarity=0.165 Sum_probs=111.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHH-H------
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLS-K------ 148 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~-~------ 148 (268)
.++++|+|+|+|||||||+|+.|+++++..++++ +++++. ..+++.++.+++++..+..++......+.. +
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999888888 455543 335778888888887776666543322221 1
Q ss_pred HHHcCCccCccEEEEcCCcCCH--HHH-------HHHHh----hcCCCeEEEEecCHHHHHhhhhHHHHHHH--HHHHHH
Q 024390 149 RLEDGYYRGEIGFILDGLPRSR--IQA-------EILDQ----LAEIDLVVNFKCADNFIVTNRGGSLKEKL--EAYAEL 213 (268)
Q Consensus 149 ~l~~~~~~~~~g~IlDGfPr~~--~qa-------~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl--~~y~~~ 213 (268)
.+... ...+..+|+|+++.+. .|. +.+.. ...+|++|+|++|++++.+|+..+ ..|+ ..+.+
T Consensus 86 ~i~~~-l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r-~~r~~~~~~~~- 162 (212)
T 2wwf_A 86 EIKSL-LLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG-EEIYEKVETQK- 162 (212)
T ss_dssp HHHHH-HHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT-SSTTCSHHHHH-
T ss_pred HHHHH-HhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC-cccccHHHHHH-
Confidence 11110 1135679999998642 121 22221 246899999999999999998421 0111 11221
Q ss_pred chHHHHHHHh---CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 214 SKPLEDYYQK---QKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 214 ~~~l~~~y~~---~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.+...|.+ ...++.||++.++++++++|.+.+...
T Consensus 163 --~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 163 --KIYETYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp --HHHHHGGGGTTCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHhccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 12233432 235788999999999999999998754
No 29
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.68 E-value=1.3e-15 Score=128.28 Aligned_cols=158 Identities=13% Similarity=0.076 Sum_probs=105.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHH---HHHHHHHHcC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF---GLLSKRLEDG 153 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~---~ll~~~l~~~ 153 (268)
++++|+|+|+|||||||+++.|++.+|+.+++.+++.... ....+..|....+.... ..+...+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~l~~~~--- 83 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE----------NIRKMSEGIPLTDDDRWPWLAAIGERL--- 83 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHH----------HHHHHHHTCCCCHHHHHHHHHHHHHHH---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchh----------hHHHHhcCCCCCchhhHHHHHHHHHHH---
Confidence 3568999999999999999999999999999998775321 11122334433332222 2223333
Q ss_pred CccCccEEEEcCCcCCHHHHHHHHhhc-CCCeEEEEecCHHHHHhhhhHHHH-----HHHHHHHHHchHHHHHHHhCCcE
Q 024390 154 YYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIVTNRGGSLK-----EKLEAYAELSKPLEDYYQKQKKL 227 (268)
Q Consensus 154 ~~~~~~g~IlDGfPr~~~qa~~l~~~~-~~d~vV~Ld~~~e~l~~Rl~~~~~-----~rl~~y~~~~~~l~~~y~~~~~l 227 (268)
..+.++|+|+......+.+.+.... .++.+|+|++|.+++.+|+..+-. +.++...+...++ + .....
T Consensus 84 --~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~---~-~~~~~ 157 (202)
T 3t61_A 84 --ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDP---R-GEVRT 157 (202)
T ss_dssp --TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCCCC---T-TSTTE
T ss_pred --hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcCCC---C-CCCCe
Confidence 2467899998877777777776543 457899999999999999954321 1121111111111 1 12246
Q ss_pred EEEeCCCCHHHHHHHHHHHHHhhccc
Q 024390 228 LEFQVGSAPVETWQGLLTALHLQHIN 253 (268)
Q Consensus 228 ~~Ida~~s~eev~~~I~~~L~~~~~~ 253 (268)
+.||++.++++++++|.+.|...++.
T Consensus 158 ~~Id~~~~~~e~~~~I~~~l~~~~~~ 183 (202)
T 3t61_A 158 VAVDVAQPLAEIVREALAGLARLAEN 183 (202)
T ss_dssp EEEESSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhhhc
Confidence 78999999999999999999877644
No 30
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.67 E-value=4.3e-15 Score=123.72 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHH-------HHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL-------LSK 148 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~l-------l~~ 148 (268)
+.|+|+|+|||||||+++.|++++ |+.++.+.+ +.+++.++.+++.+..|...+.....-. +..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999 999887642 5567788999998887776654332211 222
Q ss_pred HHHcCCccCccEEEEc----------CCcCCH--HHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHH-------HHH
Q 024390 149 RLEDGYYRGEIGFILD----------GLPRSR--IQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGS-------LKE 205 (268)
Q Consensus 149 ~l~~~~~~~~~g~IlD----------GfPr~~--~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~-------~~~ 205 (268)
+... ...+..+|+| |+++.. .....+.. ...||++|+|++|++++.+|+..+ +.+
T Consensus 75 -i~~~-l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~ 152 (197)
T 2z0h_A 75 -IKQY-LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLE 152 (197)
T ss_dssp -HTTC-----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCCCCHHHHH
T ss_pred -HHHH-HhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcccHHHHHH
Confidence 2221 2234567777 445432 22223322 246999999999999999998432 222
Q ss_pred HHH-HHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 206 KLE-AYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 206 rl~-~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
++. .|.+ +...+ ...++.||++.++++++++|.+.+..
T Consensus 153 ~~~~~~~~----~~~~~--~~~~~~Id~~~~~e~~~~~i~~~l~~ 191 (197)
T 2z0h_A 153 RVREGYLV----LAREH--PERIVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHHHHH----HHHHC--TTTEEEEETTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHH----HHHhC--CCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 221 2222 22222 34678899999999999999998864
No 31
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.67 E-value=5.7e-16 Score=128.31 Aligned_cols=162 Identities=9% Similarity=0.101 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhc-CCCChhHHHHHHHHhccCcccH--HHHHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSE--DIIFGLLSKRL 150 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~-~~~~~~g~~i~~~l~~G~~ip~--~~~~~ll~~~l 150 (268)
++|+|+|+|||||||+|+.|+++++ +.+++.++++++.+ ......+. -..+...++ ......+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR-----DEMRKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH-----HHHTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch-----hhhhcCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999998 88999999887654 22111000 011223333 22222233333
Q ss_pred HcCC-ccCccEEEEcCCcCCHHH--------HHHHHhhcCCCeEEEEecCHHHHHhh-hhH--HH------HHHHH---H
Q 024390 151 EDGY-YRGEIGFILDGLPRSRIQ--------AEILDQLAEIDLVVNFKCADNFIVTN-RGG--SL------KEKLE---A 209 (268)
Q Consensus 151 ~~~~-~~~~~g~IlDGfPr~~~q--------a~~l~~~~~~d~vV~Ld~~~e~l~~R-l~~--~~------~~rl~---~ 209 (268)
.... ...+..+|+||++....| .+.+... .++.+|+|++|++++++| +.. +- .+.+. .
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~ 155 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETIN 155 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHH
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHH
Confidence 2210 013678999997543322 2333333 589999999999998866 422 10 11111 1
Q ss_pred HHHHchHHHHHHHhCCcEEEE-eCCCCHHHHHHHHHHHH
Q 024390 210 YAELSKPLEDYYQKQKKLLEF-QVGSAPVETWQGLLTAL 247 (268)
Q Consensus 210 y~~~~~~l~~~y~~~~~l~~I-da~~s~eev~~~I~~~L 247 (268)
..+........|. ...++.| |++.++++++++|.++|
T Consensus 156 ~~~~~~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 156 FARYAATASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 1112222233332 2457888 98999999999999876
No 32
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.65 E-value=1.3e-15 Score=127.81 Aligned_cols=161 Identities=15% Similarity=0.166 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH--HHH----
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SKR---- 149 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll--~~~---- 149 (268)
+++.|+|+|+|||||||+++.|++++ |+.++++.. ....+..++.+++++..+..++.... .++ .++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~-----~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~ 76 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF-----PQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA 76 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES-----SCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec-----CCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence 56889999999999999999999999 577777531 11145678888888876654443322 221 111
Q ss_pred --HHcCCccCccEEEEcCCcCCHH--H------HHHHHh----hcCCCeEEEEecCHHHHHhhh-----h-HHHHHHHHH
Q 024390 150 --LEDGYYRGEIGFILDGLPRSRI--Q------AEILDQ----LAEIDLVVNFKCADNFIVTNR-----G-GSLKEKLEA 209 (268)
Q Consensus 150 --l~~~~~~~~~g~IlDGfPr~~~--q------a~~l~~----~~~~d~vV~Ld~~~e~l~~Rl-----~-~~~~~rl~~ 209 (268)
+... ...+..+|+|+||.+.. | .+.+.. ...||++|+|++|++++.++. + ..+.+|+..
T Consensus 77 ~~i~~~-l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~~R~~d~~e~~~~~~rl~~ 155 (204)
T 2v54_A 77 SFIQEQ-LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINRNVGEEIYEDVTFQQKVLQ 155 (204)
T ss_dssp HHHHHH-HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTTCCSSSTTCCSHHHHHHHH
T ss_pred HHHHHH-HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHhhcCcccccHHHHHHHHHH
Confidence 1110 11356789999886532 1 122222 146899999999999998721 1 133333332
Q ss_pred -HHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 210 -YAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 210 -y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
|.+.. + .....+++||++.++++++++|.+.+...
T Consensus 156 ~y~~~~----~--~~~~~~~~Id~~~~~~~v~~~i~~~l~~~ 191 (204)
T 2v54_A 156 EYKKMI----E--EGDIHWQIISSEFEEDVKKELIKNIVIEA 191 (204)
T ss_dssp HHHHHH----T--TCSSCEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH----H--hCCCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence 32211 0 01236789999999999999999998754
No 33
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.65 E-value=1.6e-15 Score=130.11 Aligned_cols=167 Identities=12% Similarity=0.071 Sum_probs=106.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc-----CcccHH-HHH-------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-----EVVSED-IIF------- 143 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G-----~~ip~~-~~~------- 143 (268)
+++.|+|+|++||||||+++.|++++....++...+.| .+.++++|+.+++++..+ ..+... ...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~ 79 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR--EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV 79 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE--SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeee--CCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHH
Confidence 47899999999999999999999998543331111222 356789999999998732 223322 111
Q ss_pred ----HHHHHHHHcCCccCccEEEEcCCcCC------------HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH-
Q 024390 144 ----GLLSKRLEDGYYRGEIGFILDGLPRS------------RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS- 202 (268)
Q Consensus 144 ----~ll~~~l~~~~~~~~~g~IlDGfPr~------------~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~- 202 (268)
+.|...+. .+..+|.|-|..+ ..+...++.+ ..||++|+|++|++++++|+..+
T Consensus 80 ~~~~~~i~paL~-----~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~ 154 (213)
T 4tmk_A 80 QLVETVIKPALA-----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG 154 (213)
T ss_dssp HHHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-----CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 22233333 3556777754321 2333334432 47999999999999999998433
Q ss_pred ----HHHHHHHHHHHchHHHH-HHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 203 ----LKEKLEAYAELSKPLED-YYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 203 ----~~~rl~~y~~~~~~l~~-~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
++++-..|.+....... +....+.+++||+++++++|+++|.+.|...
T Consensus 155 ~~dr~E~~~~~f~~rv~~~y~~la~~~~~~~vIDa~~s~eeV~~~I~~~l~~~ 207 (213)
T 4tmk_A 155 ELDRIEQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHW 207 (213)
T ss_dssp SCCTTTTSCHHHHHHHHHHHHHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHCCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 11111234443333222 2222357999999999999999999998754
No 34
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.63 E-value=2.7e-15 Score=126.12 Aligned_cols=159 Identities=14% Similarity=0.157 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhcCCCChhHHHHHHHHhccCc---ccHHHHHHHH--HHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEV---VSEDIIFGLL--SKR 149 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~~~~~~~g~~i~~~l~~G~~---ip~~~~~~ll--~~~ 149 (268)
++++|+|+|+|||||||+++.|+++++.. ++.+. .+.++.+++.+..+.. .... ...++ ..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~r 71 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE----------WNSSDWIHDIIKEAKKKDLLTPL-TFSLIHATDF 71 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE----------TTCCCHHHHHHHHHTTTSCCCHH-HHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec----------CCcHHHHHHHHhccccccCCCHH-HHHHHHHHHH
Confidence 46789999999999999999999999874 33311 0122234444443321 1111 11111 111
Q ss_pred -------HHcCCccCccEEEEcCCcCCHH--H---------HHHHHh-hcCCCeEEEEecCHHHHHhhhh-HHHH-HH--
Q 024390 150 -------LEDGYYRGEIGFILDGLPRSRI--Q---------AEILDQ-LAEIDLVVNFKCADNFIVTNRG-GSLK-EK-- 206 (268)
Q Consensus 150 -------l~~~~~~~~~g~IlDGfPr~~~--q---------a~~l~~-~~~~d~vV~Ld~~~e~l~~Rl~-~~~~-~r-- 206 (268)
+... ...+..+|+|++|.+.. | ...+.. ...+|++|+|++|++++.+|+. .+.. .+
T Consensus 72 ~~~~~~~i~~~-l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~ 150 (213)
T 2plr_A 72 SDRYERYILPM-LKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQE 150 (213)
T ss_dssp HHHHHHTHHHH-HHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTT
T ss_pred HHHHHHHHHHH-HhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccccccc
Confidence 1110 12356799999987532 2 222222 2358999999999999999985 3210 11
Q ss_pred -----------H---HHHHHHchHHHHHHHh---CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 207 -----------L---EAYAELSKPLEDYYQK---QKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 207 -----------l---~~y~~~~~~l~~~y~~---~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+ ..|.+. +..+|.+ ...+++||++.++++++++|.+.+...
T Consensus 151 ~g~~~~~~~d~~e~~~~~~~r---~~~~~~~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~~ 208 (213)
T 2plr_A 151 AGADIFPGLSPEEGFLKYQGL---ITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGEL 208 (213)
T ss_dssp TTTTTCTTSCHHHHHHHHHHH---HHHHHHHHTTTTTCEEEETTSCHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhHHHHHHH---HHHHHHHHHhhCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 1 233332 2233332 125788999999999999999998753
No 35
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.63 E-value=1.7e-15 Score=123.41 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
|+|+|+|+|||||||+|+.|++++|+++++++++.+.... ..+.+.+. .|.....++...++. .+. .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~l~-~l~-----~ 68 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG------LSIPQIFEKKGEAYFRKLEFEVLK-DLS-----E 68 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHSCHHHHHHHHHHHHH-HHT-----T
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC------CCHHHHHHHhChHHHHHHHHHHHH-HHh-----c
Confidence 5799999999999999999999999999999999877642 22333333 232222222223332 232 1
Q ss_pred ccEEEEc-C--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-----H---HHHHH-HHHHHchHHHHHHHhCC
Q 024390 158 EIGFILD-G--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-----L---KEKLE-AYAELSKPLEDYYQKQK 225 (268)
Q Consensus 158 ~~g~IlD-G--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-----~---~~rl~-~y~~~~~~l~~~y~~~~ 225 (268)
...+|++ | .+....+.+.+. .++.+|+|++|++++++|+..+ . .+++. .|.+ ...+|.. .
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~----~~~~~~~-~ 140 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFMK---SRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEE----RRKIYSK-A 140 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHHH---TTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHH----HHHHHTT-S
T ss_pred cCCeEEECCCCEeCCHHHHHHHH---cCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHH----HHHHHHh-C
Confidence 3345554 4 223333333333 4789999999999999998431 1 11121 2221 2234544 4
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 226 KLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 226 ~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.++. +++.+++++.++|.+.+...
T Consensus 141 ~~~i-~~~~~~~~~~~~i~~~l~~~ 164 (168)
T 2pt5_A 141 DIKV-KGEKPPEEVVKEILLSLEGN 164 (168)
T ss_dssp SEEE-ECSSCHHHHHHHHHHHHHTS
T ss_pred CEEE-CCCCCHHHHHHHHHHHHHhc
Confidence 4555 77799999999999998753
No 36
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.63 E-value=6.2e-15 Score=128.39 Aligned_cols=168 Identities=12% Similarity=0.076 Sum_probs=105.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc---CcccHH-HHH--------
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG---EVVSED-IIF-------- 143 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G---~~ip~~-~~~-------- 143 (268)
.+++.|+|+|++||||||+++.|++.++...+++..+.|+ +.++++|+.+++++..+ ..++.. ...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~ 102 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ 102 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999987655553334443 46789999999998632 223322 111
Q ss_pred ---HHHHHHHHcCCccCccEEEEcCCc----------CC--HHHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHHH-
Q 024390 144 ---GLLSKRLEDGYYRGEIGFILDGLP----------RS--RIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGSL- 203 (268)
Q Consensus 144 ---~ll~~~l~~~~~~~~~g~IlDGfP----------r~--~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~- 203 (268)
+.+...+. .+..+|.|-|. +. ..+...+++ ...||++|+|++|++++++|+..+-
T Consensus 103 ~~~~~I~paL~-----~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~ 177 (236)
T 3lv8_A 103 LVENVIKPALA-----RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE 177 (236)
T ss_dssp HHHHTHHHHHH-----TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C
T ss_pred HHHHHHHHHHH-----cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 12222222 35567777432 22 223333433 2579999999999999999984321
Q ss_pred ----HHHHHHHHHHchH-HHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 204 ----KEKLEAYAELSKP-LEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 204 ----~~rl~~y~~~~~~-l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+..-..|.+.... ..++......+++||+++++++|.++|.+.|...
T Consensus 178 ~dr~E~~~~~~~~rv~~~y~~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~ 229 (236)
T 3lv8_A 178 LDRIEKMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDW 229 (236)
T ss_dssp CCTTTTSCHHHHHHHHHHHHHHHHHCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1111123332222 2233333334899999999999999999998754
No 37
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.63 E-value=5.4e-15 Score=126.82 Aligned_cols=169 Identities=13% Similarity=0.128 Sum_probs=105.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC--cccH-HHHHHHHHHHHHcC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE--VVSE-DIIFGLLSKRLEDG 153 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~--~ip~-~~~~~ll~~~l~~~ 153 (268)
+++.|+|+|++||||||+++.|+++++...+++ ...+ .+.++++|+.+++++.+|. .+.. ....-+..++....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~--~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~ 81 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTR--EPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHL 81 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEE--SSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-cccc--CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999985433322 1112 3567899999999998874 2322 22222222222210
Q ss_pred ------CccCccEEEEcCCcC------------CHHHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHH-----HHHH
Q 024390 154 ------YYRGEIGFILDGLPR------------SRIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGS-----LKEK 206 (268)
Q Consensus 154 ------~~~~~~g~IlDGfPr------------~~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~-----~~~r 206 (268)
....+..+|.|-|.. ...+...++. ...||++|+|++|++++++|+..+ ++..
T Consensus 82 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~ 161 (213)
T 4edh_A 82 AGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQE 161 (213)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTTS
T ss_pred HHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCccccc
Confidence 011355677774421 1233444443 257999999999999999998321 1111
Q ss_pred HHHHHHHch----HHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 207 LEAYAELSK----PLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 207 l~~y~~~~~----~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
-..|.+... .+.+.| .+.+++||+++++++|.++|.+.|...
T Consensus 162 ~~~~~~rv~~~y~~l~~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~~ 207 (213)
T 4edh_A 162 DRRFFEAVRQTYLQRAAQA--PERYQVLDAGLPLAEVQAGLDRLLPNL 207 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHC--TTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 012222211 122222 346999999999999999999998753
No 38
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.63 E-value=1.2e-14 Score=122.98 Aligned_cols=163 Identities=14% Similarity=0.192 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHH------
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKR------ 149 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~------ 149 (268)
|.|+|+|++||||||+++.|++++ |..++-+ ..+.+++.++.+++.+..+..-|.....-+...+
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t------reP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK------REPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE------ESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE------ECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999987 5554433 2467788899999888776655543222111111
Q ss_pred HHcCCccCccEEEEcCCcCC------------HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhH--HHHHHHHHHH
Q 024390 150 LEDGYYRGEIGFILDGLPRS------------RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGG--SLKEKLEAYA 211 (268)
Q Consensus 150 l~~~~~~~~~g~IlDGfPr~------------~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~--~~~~rl~~y~ 211 (268)
+.. ....+..+|.|.|..+ ......+... ..||++|+|++|++++.+|..+ +++.+ .|.
T Consensus 75 I~~-~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~--ef~ 151 (197)
T 3hjn_A 75 IKQ-YLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKR--EFL 151 (197)
T ss_dssp HHH-HHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCH--HHH
T ss_pred HHH-HHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccH--HHH
Confidence 111 0123556777865322 1222233222 4699999999999999999732 11110 232
Q ss_pred HHchHH-HHHHHh-CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 212 ELSKPL-EDYYQK-QKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 212 ~~~~~l-~~~y~~-~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+..... .+..++ .+++++|||++++++|.++|.+.+..+
T Consensus 152 ~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~r 192 (197)
T 3hjn_A 152 ERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 222111 111122 346899999999999999999999754
No 39
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.62 E-value=3.5e-15 Score=126.00 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=101.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHH-----------H
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG-----------L 145 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~-----------l 145 (268)
++++|+|+|+|||||||+++.|+++++..++++. .+++. ..+++.+..+++.+..+..++...... .
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 85 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE-LLRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPL 85 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE-EeeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999987777663 23222 124667888888887765555542221 1
Q ss_pred HHHHHHcCCccCccEEEEcCCc-----CCHH----HHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHHHHHHH--HH
Q 024390 146 LSKRLEDGYYRGEIGFILDGLP-----RSRI----QAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLKEKLE--AY 210 (268)
Q Consensus 146 l~~~l~~~~~~~~~g~IlDGfP-----r~~~----qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~--~y 210 (268)
+...+. .+..+|+|.+. +... ..+.+..+ ..+|++|+|++|++++.+|+... ..+++ .+
T Consensus 86 i~~~l~-----~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~~~~~~~ 159 (215)
T 1nn5_A 86 IKEKLS-----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG-HERYENGAF 159 (215)
T ss_dssp HHHHHH-----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------CTTCSHHH
T ss_pred HHHHHH-----CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-ccccchHHH
Confidence 222222 35678889432 1100 02223222 36899999999999999998421 11121 12
Q ss_pred HHHchHHHHHHHh--CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 211 AELSKPLEDYYQK--QKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 211 ~~~~~~l~~~y~~--~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.+........+.. ...++.||++.++++++++|.+.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~ 201 (215)
T 1nn5_A 160 QERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDA 201 (215)
T ss_dssp HHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 2222211111111 135788999999999999999988753
No 40
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.62 E-value=1.2e-14 Score=120.37 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=97.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++.|+|+|+|||||||+++.|++++|++++++++++++.... + +.+.+. .|+....+....++......
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~--~----~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 74 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGA--D----IAWIFEMEGEAGFRRREREMIEALCKL---- 74 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTS--C----HHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--C----hhhHHHHhCHHHHHHHHHHHHHHHHhc----
Confidence 567999999999999999999999999999999988775321 1 222222 23223333444444433222
Q ss_pred CccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh--hH----------HHHHHHHHHHHHchHHHHHHH
Q 024390 157 GEIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR--GG----------SLKEKLEAYAELSKPLEDYYQ 222 (268)
Q Consensus 157 ~~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl--~~----------~~~~rl~~y~~~~~~l~~~y~ 222 (268)
...+|..| .+......+.+.. .+++|+|++|.+++.+|+ .. ...+++...... ...+|.
T Consensus 75 -~~~vi~~gg~~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~---r~~~y~ 147 (185)
T 3trf_A 75 -DNIILATGGGVVLDEKNRQQISE---TGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEI---RKPLYQ 147 (185)
T ss_dssp -SSCEEECCTTGGGSHHHHHHHHH---HEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHH---HHHHHH
T ss_pred -CCcEEecCCceecCHHHHHHHHh---CCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH---HHHHHh
Confidence 23344444 4444444455543 248999999999999998 21 123334333333 334454
Q ss_pred hCCcEEEEeCCC-CHHHHHHHHHHHHHhh
Q 024390 223 KQKKLLEFQVGS-APVETWQGLLTALHLQ 250 (268)
Q Consensus 223 ~~~~l~~Ida~~-s~eev~~~I~~~L~~~ 250 (268)
.... +.||++. +++++.++|.+.+...
T Consensus 148 ~~ad-~~Idt~~~~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 148 AMAD-LVYPTDDLNPRQLATQILVDIKQT 175 (185)
T ss_dssp HHCS-EEEECTTCCHHHHHHHHHHHSCC-
T ss_pred hcCC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence 3222 4577665 8999999999988754
No 41
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.62 E-value=4.2e-15 Score=121.48 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=93.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
+++|+|+|+|||||||+|+.|++++|++++++++++++.. +.... +.+. .|.....++...++. .+.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~----~~~~~~~~~~~~~~~~~~~~-~l~----- 69 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVA----DVVAAEGWPGFRRRESEALQ-AVA----- 69 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHH----HHHHHHHHHHHHHHHHHHHH-HHC-----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHH----HHHHHcCHHHHHHHHHHHHH-Hhh-----
Confidence 3579999999999999999999999999999999987752 22222 2221 222222222222222 222
Q ss_pred CccEEEE-cC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh--HH-----------HHHHHHHHHHHchHHHHH
Q 024390 157 GEIGFIL-DG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG--GS-----------LKEKLEAYAELSKPLEDY 220 (268)
Q Consensus 157 ~~~g~Il-DG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~--~~-----------~~~rl~~y~~~~~~l~~~ 220 (268)
..++|+ +| .+......+.+. .++++|+|++|++++.+|+. .+ ..+++..+ ......+
T Consensus 70 -~~~~vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~---~~~~~~~ 142 (173)
T 1e6c_A 70 -TPNRVVATGGGMVLLEQNRQFMR---AHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAV---LREREAL 142 (173)
T ss_dssp -CSSEEEECCTTGGGSHHHHHHHH---HHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHH---HHHHHHH
T ss_pred -cCCeEEECCCcEEeCHHHHHHHH---cCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHH---HHHHHHH
Confidence 234555 45 333333344443 25899999999999999985 32 12223322 2222333
Q ss_pred HHhCCcEEEEeCC-CCHHHHHHHHHHHHH
Q 024390 221 YQKQKKLLEFQVG-SAPVETWQGLLTALH 248 (268)
Q Consensus 221 y~~~~~l~~Ida~-~s~eev~~~I~~~L~ 248 (268)
|.. ..+.||++ .+++++.++|.+.+.
T Consensus 143 ~~~--~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 143 YQD--VAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp HHH--HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred HHh--CcEEEECCCCCHHHHHHHHHHHhc
Confidence 443 23467877 799999999998875
No 42
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.62 E-value=4.3e-15 Score=122.99 Aligned_cols=152 Identities=22% Similarity=0.214 Sum_probs=95.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHH-hccCcccHHHHHHHHHHHHHcCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l-~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
+++|+|+|+|||||||+|+.|++++|++++++|+++++... .+ +.+.+ ..|+....+....++...+..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 71 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RS----IADIFATDGEQEFRRIEEDVVRAALAD---- 71 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SC----HHHHHHHHCHHHHHHHHHHHHHHHHHH----
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC--CC----HHHHHHHhChHHHHHHHHHHHHHHHhc----
Confidence 35699999999999999999999999999999999887642 11 22333 234444444444555443332
Q ss_pred CccEEEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----------HHHHHHHHHHHchHHHHHHHhC
Q 024390 157 GEIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----------LKEKLEAYAELSKPLEDYYQKQ 224 (268)
Q Consensus 157 ~~~g~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----------~~~rl~~y~~~~~~l~~~y~~~ 224 (268)
...+|.+| +.......+.+ . .+.+|+|+||.+++.+|+..+ ..+++..+... ...+|...
T Consensus 72 -~~~vi~~g~~~v~~~~~~~~l---~-~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~---r~~~~~~~ 143 (184)
T 2iyv_A 72 -HDGVLSLGGGAVTSPGVRAAL---A-GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAK---RAPLYRRV 143 (184)
T ss_dssp -CCSEEECCTTGGGSHHHHHHH---T-TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHH---HHHHHHHH
T ss_pred -CCeEEecCCcEEcCHHHHHHH---c-CCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHH---HHHHHhcc
Confidence 12233333 22222222222 1 578999999999999998321 23344433322 23345432
Q ss_pred CcEEEEeCC-CCHHHHHHHHHHHHH
Q 024390 225 KKLLEFQVG-SAPVETWQGLLTALH 248 (268)
Q Consensus 225 ~~l~~Ida~-~s~eev~~~I~~~L~ 248 (268)
. .+.||++ .++++++++|.+.+.
T Consensus 144 ~-~~~Idt~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 144 A-TMRVDTNRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp C-SEEEECSSSCHHHHHHHHHTTSC
T ss_pred C-CEEEECCCCCHHHHHHHHHHHHh
Confidence 2 3578887 799999999988775
No 43
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.62 E-value=2.4e-15 Score=123.33 Aligned_cols=157 Identities=13% Similarity=0.042 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH-HhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSK-LLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~-~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++.|+|+|+|||||||+|+.|++ .+|+.+++++ .+++.....+. +. ...+...++....+....++...+... .
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d-~~r~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 76 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RD-EYKYTKKKEGIVTGMQFDTAKSILYGG--D 76 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-GG-GCCCCHHHHHHHHHHHHHHHHHHHTSC--S
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH-HHHHHhhCCCc-cc-hhhhchhhhhHHHHHHHHHHHHHHhhc--c
Confidence 46799999999999999999999 6899999985 45554432111 00 000000111112334445555555321 2
Q ss_pred CccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhh---------HHHHHHHHHHHHHchHHHHHHHh
Q 024390 157 GEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG---------GSLKEKLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~---------~~~~~rl~~y~~~~~~l~~~y~~ 223 (268)
.+.++|+||++.+..+.+.+.+. ..+..+|+|++|.+++.+|+. +.++++++.|+... .
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~--------~ 148 (181)
T 1ly1_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYL--------G 148 (181)
T ss_dssp SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHH--------T
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCCHHHHHHHHHHhhccC--------C
Confidence 46789999999887776666542 234579999999999999983 34455555555431 1
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 224 QKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 224 ~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
.. .+.+|++.+ +++...|...+..
T Consensus 149 ~~-~~~id~~~~-~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 149 LP-VYNGTPGKP-KAVIFDVDGTLAK 172 (181)
T ss_dssp CC-CC---------------------
T ss_pred CC-ccccCCCCC-ceeeehhhhhhhc
Confidence 11 123776664 7888888777764
No 44
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.61 E-value=4.1e-15 Score=123.06 Aligned_cols=158 Identities=9% Similarity=0.059 Sum_probs=91.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCC-CC--hhHHHHHHHHhccCccc--HHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSP-RS--SLHKQIANAVNRGEVVS--EDIIFGLLS 147 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~-~~--~~g~~i~~~l~~G~~ip--~~~~~~ll~ 147 (268)
+++|+|+|+|||||||+++.|+++++ +.++++++++|+.... +. +.. ..+...+ .......+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 75 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRD-------QMRKMDPETQKRIQKMAG 75 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGG-------GGSSCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHH-------HHhcCCHHHHHHHHHHHH
Confidence 56899999999999999999999998 9999999998875321 10 000 0011111 111122222
Q ss_pred HHHHcCCccCccEEEEcCCcCCHHHH--------HHHHhhcCCCeEEEEecCHHHHHh-hhhH--H---------HHHHH
Q 024390 148 KRLEDGYYRGEIGFILDGLPRSRIQA--------EILDQLAEIDLVVNFKCADNFIVT-NRGG--S---------LKEKL 207 (268)
Q Consensus 148 ~~l~~~~~~~~~g~IlDGfPr~~~qa--------~~l~~~~~~d~vV~Ld~~~e~l~~-Rl~~--~---------~~~rl 207 (268)
+.+... ..+.+||+||.+....+. ..+.. ..++++|+|++|++++.+ |+.+ + +..+.
T Consensus 76 ~~i~~~--~~~~~viid~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~ 152 (192)
T 1kht_A 76 RKIAEM--AKESPVAVDTHSTVSTPKGYLPGLPSWVLNE-LNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQ 152 (192)
T ss_dssp HHHHHH--HTTSCEEEECCSEEEETTEEEESSCHHHHHH-HCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHH
T ss_pred HHHHhh--ccCCeEEEccceeccccccccccCcHHHHhc-cCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHH
Confidence 323221 124579999975421110 12222 257899999999999996 7732 1 11111
Q ss_pred HHHHHHchHHHHHHHhCCcEEEE-eCCCCHHHHHHHHHHHH
Q 024390 208 EAYAELSKPLEDYYQKQKKLLEF-QVGSAPVETWQGLLTAL 247 (268)
Q Consensus 208 ~~y~~~~~~l~~~y~~~~~l~~I-da~~s~eev~~~I~~~L 247 (268)
............|.. ..++.| +.+.++++++++|.+.|
T Consensus 153 -~~~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 153 -FMNRCAAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp -HHHHHHHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 122222222333332 334555 44566999999998876
No 45
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.61 E-value=7.3e-15 Score=120.01 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=92.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
...+|+|+|+|||||||+|+.|++++|++++++++++++... ..+.+.+. .|+....+...+++......
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g------~~~~~~~~~~g~~~~~~~~~~~l~~~~~~--- 76 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG------LSVREIFEELGEDNFRMFEKNLIDELKTL--- 76 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC------CCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 456799999999999999999999999999999999987642 22334443 25443434444444443321
Q ss_pred cCccE-EEEcC--CcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH-HHH-----HHHHHHHchHHHHHHHhCCc
Q 024390 156 RGEIG-FILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-KEK-----LEAYAELSKPLEDYYQKQKK 226 (268)
Q Consensus 156 ~~~~g-~IlDG--fPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-~~r-----l~~y~~~~~~l~~~y~~~~~ 226 (268)
... +|..| ++.. .. +..++.+|+|++|++++++|+..+. ..| .+...+.......+|....
T Consensus 77 --~~~~Vi~~g~g~~~~-~~------l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~~~a- 146 (168)
T 1zuh_A 77 --KTPHVISTGGGIVMH-EN------LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNA- 146 (168)
T ss_dssp --SSCCEEECCGGGGGC-GG------GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHHHTC-
T ss_pred --CCCEEEECCCCEech-hH------HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHHHHC-
Confidence 222 33322 4433 11 2357899999999999999984331 001 1122222222334454422
Q ss_pred EEEEeCCCCHHHHHHHHHHHH
Q 024390 227 LLEFQVGSAPVETWQGLLTAL 247 (268)
Q Consensus 227 l~~Ida~~s~eev~~~I~~~L 247 (268)
.+.||++.++++++++|.+.|
T Consensus 147 ~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 147 SFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp SEEEEGGGCHHHHHHHHHHC-
T ss_pred CEEEECCCCHHHHHHHHHHHh
Confidence 245677679999999998765
No 46
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.60 E-value=3.3e-15 Score=122.99 Aligned_cols=154 Identities=10% Similarity=0.102 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCccC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG 157 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (268)
++|+|+|+|||||||+|+.|++++|+++++++++++.... ..+.+.+. .|...+.+....++.. +..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g------~~~~~~~~~~g~~~~~~~~~~~~~~-l~~----- 72 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN------QKVSEIFEQKRENFFREQEQKMADF-FSS----- 72 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT------SCHHHHHHHHCHHHHHHHHHHHHHH-HTT-----
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC------CCHHHHHHHcCHHHHHHHHHHHHHH-HHc-----
Confidence 4699999999999999999999999999999999877532 11222222 2433333333344432 321
Q ss_pred ccEEEEc-CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH-HHH-----HHHHHHHchHHHHHHHhCCcEEEE
Q 024390 158 EIGFILD-GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-KEK-----LEAYAELSKPLEDYYQKQKKLLEF 230 (268)
Q Consensus 158 ~~g~IlD-GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-~~r-----l~~y~~~~~~l~~~y~~~~~l~~I 230 (268)
...+|++ |.+.... .. +...+.+|+|++|.+++.+|+..+. ..| .+.+.+.......+|... ..+.|
T Consensus 73 ~~~~vi~~g~~~~~~-~~----l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y~~~-~~~~I 146 (175)
T 1via_A 73 CEKACIATGGGFVNV-SN----LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQK-ANFIL 146 (175)
T ss_dssp CCSEEEECCTTGGGS-TT----GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHH-CSEEE
T ss_pred cCCEEEECCCCEehh-hH----HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHhc-CCEEE
Confidence 2345555 5432211 11 2245789999999999999984331 011 222333333344556432 24678
Q ss_pred eCC-CCHHHHHHHHHHHHHhh
Q 024390 231 QVG-SAPVETWQGLLTALHLQ 250 (268)
Q Consensus 231 da~-~s~eev~~~I~~~L~~~ 250 (268)
|++ .+++++++.|.+.+...
T Consensus 147 dt~~~~~eev~~~I~~~l~~~ 167 (175)
T 1via_A 147 NIENKNIDELLSEIKKVIKEG 167 (175)
T ss_dssp ECTTCCHHHHHHHHHHHHC--
T ss_pred ECCCCCHHHHHHHHHHHHHhc
Confidence 887 79999999999998754
No 47
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.60 E-value=1.6e-14 Score=117.56 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (268)
+.|+|+|+|||||||+++.|++++|+.+++.+.+...... +...+.. . ..+. .+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~--------~~~~~~~------------~-~~l~-----~~ 55 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG--------NEKLFEH------------F-NKLA-----DE 55 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC--------HHHHHHH------------H-HHHT-----TC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH--------HHHHHHH------------H-HHHH-----hC
Confidence 4799999999999999999999999999999877655420 0111110 0 0111 12
Q ss_pred cEEEEcCC---------------cCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhhhHHH-----HHHHHHHHHHchHH
Q 024390 159 IGFILDGL---------------PRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGGSL-----KEKLEAYAELSKPL 217 (268)
Q Consensus 159 ~g~IlDGf---------------Pr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl~~~~-----~~rl~~y~~~~~~l 217 (268)
..+|.|.+ .....+...+... ..|+++|+|++|++++.+|+..+- .+.++...+....+
T Consensus 56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~ 135 (173)
T 3kb2_A 56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREV 135 (173)
T ss_dssp CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence 23333311 1123344444433 578999999999999999984321 01111111111222
Q ss_pred HHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390 218 EDYYQKQKKLLEFQVG-SAPVETWQGLLTALHLQ 250 (268)
Q Consensus 218 ~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~ 250 (268)
...|. ...+.||++ .++++++++|.+.+...
T Consensus 136 ~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~ 167 (173)
T 3kb2_A 136 MSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELE 167 (173)
T ss_dssp HHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHG
T ss_pred HhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 22232 357789988 59999999999998863
No 48
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.60 E-value=7.3e-15 Score=121.94 Aligned_cols=164 Identities=10% Similarity=0.092 Sum_probs=89.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
.+++.|+|+|+|||||||+++.|++++|+++++.+++...........+......+.. .-.+.+...+...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~---- 75 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ---- 75 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh----
Confidence 3578899999999999999999999999999999765433211000000000000000 000111122233332
Q ss_pred cCccEEEEcCCcCCHHHHHHH---Hh-hcCCCeEEEEecCHHHHHhhhhHHHH--HHH-----HHHHHHchHHHHHHHh-
Q 024390 156 RGEIGFILDGLPRSRIQAEIL---DQ-LAEIDLVVNFKCADNFIVTNRGGSLK--EKL-----EAYAELSKPLEDYYQK- 223 (268)
Q Consensus 156 ~~~~g~IlDGfPr~~~qa~~l---~~-~~~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl-----~~y~~~~~~l~~~y~~- 223 (268)
.+.++|+|+++....+...+ .. ...++++|+|++|++++.+|+..+-. +|. ..|... ..+...|..
T Consensus 76 -~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~-~~~~~~~~~~ 153 (193)
T 2rhm_A 76 -SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPAD-LELVRSRGDI 153 (193)
T ss_dssp -TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHH-HHHHHHSCCC
T ss_pred -CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcc-hhhHHHHhcC
Confidence 35689999987322222222 22 23577999999999999999955432 121 112110 012222321
Q ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 224 -----QKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 224 -----~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
....+.||++...+++.++|.+.|.
T Consensus 154 ~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~ 183 (193)
T 2rhm_A 154 PPLPLGGPLLTVDTTFPEQIDMNAIVQWVR 183 (193)
T ss_dssp CCCCCCSCEEEEECSSGGGCCHHHHHHHHH
T ss_pred CCccCCCCEEEEeCCCCcccCHHHHHHHHH
Confidence 1357889988754444444444443
No 49
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.57 E-value=2e-14 Score=126.18 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=105.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
+..|+|+|++||||||+++.|++.+|+.+++++++++.... +.. +.+.+. .|+....+...+++.......
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~----i~~i~~~~ge~~fr~~e~~~l~~l~~~~--- 119 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTS----VAEIFEHFGESVFREKETEALKKLSLMY--- 119 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSC----HHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-Ccc----HHHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence 66799999999999999999999999999999999988652 222 334333 255555555555555544331
Q ss_pred CccEEEEc--CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-------HHH---------HHHHHHHHchHHH
Q 024390 157 GEIGFILD--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LKE---------KLEAYAELSKPLE 218 (268)
Q Consensus 157 ~~~g~IlD--GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-------~~~---------rl~~y~~~~~~l~ 218 (268)
..++|.+ |.+....+...+. .+++|||++|.+++.+|+... ... ..+.+.+......
T Consensus 120 -~~~Via~GgG~v~~~~~~~~l~----~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~ 194 (250)
T 3nwj_A 120 -HQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARG 194 (250)
T ss_dssp -SSEEEECCGGGGGSHHHHHHHT----TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHH
T ss_pred -CCcEEecCCCeecCHHHHHHHh----CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHH
Confidence 2345544 4666555555553 378999999999999998421 000 0122333333344
Q ss_pred HHHHhCCcEEEE----------eC-CCCHHHHHHHHHHHHHhh
Q 024390 219 DYYQKQKKLLEF----------QV-GSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 219 ~~y~~~~~l~~I----------da-~~s~eev~~~I~~~L~~~ 250 (268)
..|...+.++.+ |+ +.+++++.++|.+.+...
T Consensus 195 ~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~ 237 (250)
T 3nwj_A 195 EAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY 237 (250)
T ss_dssp HHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 557655545433 54 579999999999998764
No 50
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.56 E-value=2.7e-14 Score=118.80 Aligned_cols=154 Identities=12% Similarity=0.201 Sum_probs=92.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH-hCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcc---cHHHHHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL-LEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV---SEDIIFGLLSKRLE 151 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~-l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i---p~~~~~~ll~~~l~ 151 (268)
.++++|+|+|+|||||||+++.|++. +|++++++|+++++... ....++. +.. ..+ +++...+.+...+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~-~~~~~~~----~~~-~~~~r~~~~~~~~~l~~~~~ 81 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-YTEYDTE----LDT-HIIEEKDEDRLLDFMEPIMV 81 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC-SCC----------C-CCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh-hhhHHHH----hhh-cccCCCCHHHHHHHHHHHHh
Confidence 46788999999999999999999999 89999999999988511 1112221 111 112 33344444544432
Q ss_pred cCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH------HHHHHH-H-HHHHchHHHHHHHh
Q 024390 152 DGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------LKEKLE-A-YAELSKPLEDYYQK 223 (268)
Q Consensus 152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~------~~~rl~-~-y~~~~~~l~~~y~~ 223 (268)
. ..++|+|+.... .++. ..++.+|+|++|.+++++|+..+ +..++. + +..........|.
T Consensus 82 ~-----~g~~vi~~~~~~-----~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~- 149 (184)
T 1y63_A 82 S-----RGNHVVDYHSSE-----LFPE-RWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE- 149 (184)
T ss_dssp S-----SSEEEEECSCCT-----TSCG-GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-
T ss_pred c-----cCCEEEeCchHh-----hhhh-ccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhc-
Confidence 1 357888865321 1211 23689999999999999998432 222221 1 1111223344454
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHH
Q 024390 224 QKKLLEFQVGSAPVETWQGLLTALH 248 (268)
Q Consensus 224 ~~~l~~Ida~~s~eev~~~I~~~L~ 248 (268)
...++.+| +.+++++.+++.+++.
T Consensus 150 ~~~vi~~n-~~~~~~~~~~v~~i~~ 173 (184)
T 1y63_A 150 DDIVLVRE-NDTLEQMAATVEEIRE 173 (184)
T ss_dssp GGGEEEEE-CSSHHHHHHHHHHHHH
T ss_pred cCcEEECC-CCCHHHHHHHHHHHHH
Confidence 23455555 6789999555555543
No 51
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.56 E-value=5.9e-14 Score=119.40 Aligned_cols=158 Identities=14% Similarity=0.110 Sum_probs=96.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc------cCcccHHH---------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR------GEVVSEDI--------- 141 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~------G~~ip~~~--------- 141 (268)
++++|+|+|++||||||+++.|++ +|++++++|++++....++......+.+.+.. |. +....
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~-~~~~~l~~~~f~~~ 80 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGT-LQRRALRERIFANP 80 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSC-BCHHHHHHHHHTCH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCC-CCHHHHHHHHhCCH
Confidence 467899999999999999999998 99999999999988665544444444444321 11 11111
Q ss_pred ---------HHHHHHHH----HHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH------
Q 024390 142 ---------IFGLLSKR----LEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------ 202 (268)
Q Consensus 142 ---------~~~ll~~~----l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~------ 202 (268)
+...+... +... .+..+|+| .|...... + ...+|.+|+|++|++++++|+..+
T Consensus 81 ~~~~~l~~~~~p~v~~~~~~~~~~~---~~~~vi~~-~~~l~~~~--~--~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~ 152 (218)
T 1vht_A 81 EEKNWLNALLHPLIQQETQHQIQQA---TSPYVLWV-VPLLVENS--L--YKKANRVLVVDVSPETQLKRTMQRDDVTRE 152 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CSSEEEEE-CTTTTTTT--G--GGGCSEEEEEECCHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHhHCHHHHHHHHHHHHhc---CCCEEEEE-eeeeeccC--c--cccCCEEEEEECCHHHHHHHHHHcCCCCHH
Confidence 11111111 1111 22334444 45432221 1 135789999999999999998432
Q ss_pred -HHHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 203 -LKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 203 -~~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+.+++ ..+ .+...++...+ +.||++.+++++.++|.+.+...
T Consensus 153 ~~~~~~---~~~-~~~~~~~~~ad--~vId~~~~~~~~~~~I~~~l~~~ 195 (218)
T 1vht_A 153 HVEQIL---AAQ-ATREARLAVAD--DVIDNNGAPDAIASDVARLHAHY 195 (218)
T ss_dssp HHHHHH---HHS-CCHHHHHHHCS--EEEECSSCTTSHHHHHHHHHHHH
T ss_pred HHHHHH---Hhc-CChHHHHHhCC--EEEECCCCHHHHHHHHHHHHHHH
Confidence 12222 222 12233333333 56788889999999999988643
No 52
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.55 E-value=2.1e-13 Score=114.89 Aligned_cols=156 Identities=11% Similarity=0.127 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCc-----cc---------------
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS--------------- 138 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~-----ip--------------- 138 (268)
++|.|+|++||||||+++.|++ +|++++++|++.++...++......+.+.+..... +.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 99999999999887654443322222222211000 00
Q ss_pred ---HHHHHHHH----HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-------HH
Q 024390 139 ---EDIIFGLL----SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LK 204 (268)
Q Consensus 139 ---~~~~~~ll----~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-------~~ 204 (268)
+.+....+ .+.+... .+.++|+|+ |..... . + ...+|.+|+|++|++++.+|+..+ +.
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~---~~~~vv~~~-~~l~e~-~-~--~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~ 153 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQ---TAPYTLFVV-PLLIEN-K-L--TALCDRILVVDVSPQTQLARSAQRDNNNFEQIQ 153 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---CSSEEEEEC-TTTTTT-T-C--GGGCSEEEEEECCHHHHHHHHC-----CHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhc---CCCEEEEEe-chhhhc-C-c--HhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence 11111111 1222221 245788887 432111 1 1 124689999999999999999432 23
Q ss_pred HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHH----HHHHHHHHHHHh
Q 024390 205 EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPV----ETWQGLLTALHL 249 (268)
Q Consensus 205 ~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~e----ev~~~I~~~L~~ 249 (268)
+|+. .+ .+..+.|...+ +.||++.+++ ++.++|.+.+..
T Consensus 154 ~r~~---~q-~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~~~~ 196 (206)
T 1jjv_A 154 RIMN---SQ-VSQQERLKWAD--DVINNDAELAQNLPHLQQKVLELHQF 196 (206)
T ss_dssp HHHH---HS-CCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---hc-CChHHHHHhCC--EEEECCCCccccHHHHHHHHHHHHHH
Confidence 3332 22 23444555444 4678777999 999999988864
No 53
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.55 E-value=1.8e-14 Score=123.82 Aligned_cols=168 Identities=13% Similarity=0.066 Sum_probs=104.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-cccH-HHHHHHHHHHHHcC-
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-VVSE-DIIFGLLSKRLEDG- 153 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-~ip~-~~~~~ll~~~l~~~- 153 (268)
+++.|+|.|++||||||+++.|+++++... .++++. ..++++|+.+++++..+. .... ....-...+|.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~----~~~~ep-~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLKFP-ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE----EEEESS-CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc----eEEEec-CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999998622 233332 347899999999988654 2322 11111122222200
Q ss_pred ----CccCccEEEEcCCcCCHH--H---------HHHHHhh----cCCCeEEEE-ecCHHHHHhhhh---HHHHHHHHHH
Q 024390 154 ----YYRGEIGFILDGLPRSRI--Q---------AEILDQL----AEIDLVVNF-KCADNFIVTNRG---GSLKEKLEAY 210 (268)
Q Consensus 154 ----~~~~~~g~IlDGfPr~~~--q---------a~~l~~~----~~~d~vV~L-d~~~e~l~~Rl~---~~~~~rl~~y 210 (268)
....+..+|.|-|..+.. | .+++.++ ..||++|+| ++|++++.+|+. ++++. ..|
T Consensus 79 ~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~--~~f 156 (216)
T 3tmk_A 79 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYET--VKF 156 (216)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCC--HHH
T ss_pred HHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccH--HHH
Confidence 011355677786543211 2 1233332 479999999 999999999973 11111 123
Q ss_pred HHHchHH-HHHHH-----hCCcEEEEe-CCCCHHHHHHHHHHHHHhhc
Q 024390 211 AELSKPL-EDYYQ-----KQKKLLEFQ-VGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 211 ~~~~~~l-~~~y~-----~~~~l~~Id-a~~s~eev~~~I~~~L~~~~ 251 (268)
.+..... .+++. ..+.+++|| +++++++|.++|.+.|....
T Consensus 157 ~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l 204 (216)
T 3tmk_A 157 QEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVL 204 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 2222211 11111 235799999 89999999999999998654
No 54
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.54 E-value=1.3e-13 Score=113.45 Aligned_cols=153 Identities=8% Similarity=-0.070 Sum_probs=86.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCcc-chhHHHHhhcCCCChhHHHHHHHHhccCcc------cHHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI-SMSSIVRQDLSPRSSLHKQIANAVNRGEVV------SEDIIFGLLSK 148 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~i-s~~dlir~~~~~~~~~g~~i~~~l~~G~~i------p~~~~~~ll~~ 148 (268)
.+++.|+|+|+|||||||+|+.|++++|.+++ +. ...+..+++.+..|... ..+.+.+.+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~-----------~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 71 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEP-----------EEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQY 71 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEECCT-----------HHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEch-----------hhhHHHHHHhCccccchhhhhHHHHHHHHHHHHH
Confidence 46789999999999999999999999999988 32 11222233322222111 01233445555
Q ss_pred HHHcCCccCccEEEEcCCcCCHHHH----HHHHhhcCCCeEEEEecCHHHHHhhhhHHH-----HHHHHHHHHHchHHHH
Q 024390 149 RLEDGYYRGEIGFILDGLPRSRIQA----EILDQLAEIDLVVNFKCADNFIVTNRGGSL-----KEKLEAYAELSKPLED 219 (268)
Q Consensus 149 ~l~~~~~~~~~g~IlDGfPr~~~qa----~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-----~~rl~~y~~~~~~l~~ 219 (268)
.+.. .+..+|+|+........ +.+.....+-.+|+|+||++++.+|+..+- .++++.+.+...++ .
T Consensus 72 ~l~~----~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~-~ 146 (183)
T 2vli_A 72 ASRE----AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGE-Q 146 (183)
T ss_dssp HHHH----CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHHHTSG-G
T ss_pred HHHh----CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHhhccc-c
Confidence 5543 24557888765444322 222222222356999999999999984331 12233222222222 1
Q ss_pred HHHhCCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390 220 YYQKQKKLLEFQVG-SAPVETWQGLLTALHLQ 250 (268)
Q Consensus 220 ~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~ 250 (268)
.. + .||++ .++++++++|.+.+...
T Consensus 147 ----~~-~-~Id~~~~~~~~~~~~I~~~l~~~ 172 (183)
T 2vli_A 147 ----FQ-T-HIDTAGLGTQQVAEQIAAQVGLT 172 (183)
T ss_dssp ----GC-S-EEECTTCCHHHHHHHHHHHHTCC
T ss_pred ----cc-e-EeeCCCCCHHHHHHHHHHHHHHh
Confidence 12 3 78987 89999999999999753
No 55
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.54 E-value=5.5e-14 Score=121.37 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=94.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHH-hhcCCCChhHHHHHHHHhccCcccHHHH-HHHHHHHHHc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVR-QDLSPRSSLHKQIANAVNRGEVVSEDII-FGLLSKRLED 152 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir-~~~~~~~~~g~~i~~~l~~G~~ip~~~~-~~ll~~~l~~ 152 (268)
.+++.|+|+|++||||||+++.|+++++. ..+++ +. ...+.++++++.+++++........... .-+..+|.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v---~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~ 95 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNN---VVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREH 95 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGG---EEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCcee---eEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998764 32222 11 2235678899999998875322333221 1122222221
Q ss_pred C------CccCccEEEEcCCcCC------------HHHHHHHHhh---cCCCeEEEEecCHHHHHhhhhHHHHHHHH---
Q 024390 153 G------YYRGEIGFILDGLPRS------------RIQAEILDQL---AEIDLVVNFKCADNFIVTNRGGSLKEKLE--- 208 (268)
Q Consensus 153 ~------~~~~~~g~IlDGfPr~------------~~qa~~l~~~---~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~--- 208 (268)
. ....+..+|.|-|..+ ..+...++++ ..||++|+|++|++++++|+ . ..|++
T Consensus 96 ~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~--rdr~E~~~ 172 (223)
T 3ld9_A 96 FVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-C--KNGYEFAD 172 (223)
T ss_dssp HHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-------------------C
T ss_pred HHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-c--cCccccch
Confidence 1 0113456777855321 2233333332 37999999999999999998 1 22222
Q ss_pred -HHHHHchHH-HHHHHh-CCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 209 -AYAELSKPL-EDYYQK-QKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 209 -~y~~~~~~l-~~~y~~-~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
.|.+..... .++... .+.+++||+++++++| ++|.+.|...
T Consensus 173 ~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~ 216 (223)
T 3ld9_A 173 MEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEV 216 (223)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHH
Confidence 233333221 122222 2468999999999999 9999988754
No 56
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.54 E-value=3.8e-14 Score=124.54 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=95.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH---hCCCcc--chhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL---LEVPRI--SMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~---l~~~~i--s~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (268)
+++.|+|+|+|||||||+|+.|++. +|+.++ +.++ ++..+..-.. .++..........+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~-~~~~l~~~~~----------~~e~~~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL-IRESFPVWKE----------KYEEFIKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH-HHTTSSSCCG----------GGHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH-HHHHHhhhhH----------HHHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999998 788877 7654 4444322111 1111111222233433332
Q ss_pred cCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHH----HHHHHHHHHHchHHHHHHHh
Q 024390 152 DGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSL----KEKLEAYAELSKPLEDYYQK 223 (268)
Q Consensus 152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~----~~rl~~y~~~~~~l~~~y~~ 223 (268)
. ..+|+|+.+....+.+.+... ..++++|+|+||.+++.+|+..+- .+.++...+........|.-
T Consensus 72 -----~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~l~~~~~~~e~~~~~~~~ 145 (260)
T 3a4m_A 72 -----N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKW 145 (260)
T ss_dssp -----T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSCHHHHHHHHHHCCCTTSSCGG
T ss_pred -----C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCCHHHHHHHHHHhcCccccCCC
Confidence 3 689999987766655555432 457899999999999999984321 01111111110000011110
Q ss_pred CCcEEEEeCCC--CHHHHHHHHHHHHHhh
Q 024390 224 QKKLLEFQVGS--APVETWQGLLTALHLQ 250 (268)
Q Consensus 224 ~~~l~~Ida~~--s~eev~~~I~~~L~~~ 250 (268)
....+.||++. +++++++.|.+.+...
T Consensus 146 ~~~~~~Id~~~~~~~~ei~~~I~~~l~~~ 174 (260)
T 3a4m_A 146 DEPFLIIDTTKDIDFNEIAKKLIEKSKEI 174 (260)
T ss_dssp GCCSEEEETTSCCCHHHHHHHHHHHHTSC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHhcccCC
Confidence 12457889876 8999999999988754
No 57
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.53 E-value=9.9e-14 Score=118.24 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=96.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC----CCChhH--HHHHHHHh-----------------cc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS----PRSSLH--KQIANAVN-----------------RG 134 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~----~~~~~g--~~i~~~l~-----------------~G 134 (268)
+++|.|+|++||||||+++.|++.+|++++++|++++.... .+.++. ..+.+... .|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 46899999999999999999999999999999999986421 122111 11222211 23
Q ss_pred CcccHHHHH-------------HHHHHHHHcC--CccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390 135 EVVSEDIIF-------------GLLSKRLEDG--YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 135 ~~ip~~~~~-------------~ll~~~l~~~--~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
..+++.+.. ..+.+.+... ....+.++|+||.... +. .+..+|++|+|+++.+++.+|.
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~--~~----~~~~~d~~i~l~~~~e~~~~R~ 158 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMG--TV----VFPDAPVKIFLDASSEERAHRR 158 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCC--CC----CCTTCSEEEEEECCHHHHHHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCcc--ce----EecCCCEEEEEeCCHHHHHHHH
Confidence 322222110 1233322211 0124678999997321 10 1236899999999999999995
Q ss_pred hHHHHHHHH--HHHHHchHHH-----HHH---Hh---CCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390 200 GGSLKEKLE--AYAELSKPLE-----DYY---QK---QKKLLEFQVG-SAPVETWQGLLTALHLQ 250 (268)
Q Consensus 200 ~~~~~~rl~--~y~~~~~~l~-----~~y---~~---~~~l~~Ida~-~s~eev~~~I~~~L~~~ 250 (268)
...+.+|-. .+.+....+. ++. .. ....+.||++ .++++++++|.+.+...
T Consensus 159 ~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~ 223 (227)
T 1cke_A 159 MLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQK 223 (227)
T ss_dssp HHHHHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 332222200 0111111110 111 11 1123688988 79999999999998654
No 58
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.53 E-value=2.1e-13 Score=113.85 Aligned_cols=161 Identities=10% Similarity=0.039 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC-ccC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY-YRG 157 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~-~~~ 157 (268)
|+|+|+|+|||||||+++.|+++++..++.... .+..+ +..+...+...+.......+..++.... ...
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 70 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPV-------EENPY---FEQYYKDLKKTVFKMQIYMLTARSKQLKQAKN 70 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCG-------GGCTT---HHHHTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccc-------cccHH---HHHHHhCccccchhHHHHHHHHHHHHHHHhhc
Confidence 479999999999999999999999986654210 00000 1111111111111111122222222110 011
Q ss_pred ccEEEEcCCcCCHH--HH-----------------HHHH----hh-------cCCCeEEEEecCHHHHHhhhhHHH---H
Q 024390 158 EIGFILDGLPRSRI--QA-----------------EILD----QL-------AEIDLVVNFKCADNFIVTNRGGSL---K 204 (268)
Q Consensus 158 ~~g~IlDGfPr~~~--qa-----------------~~l~----~~-------~~~d~vV~Ld~~~e~l~~Rl~~~~---~ 204 (268)
..++|+|+++.+.. +. ..+. .+ ..+|++|+|++|++++++|+.++- .
T Consensus 71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~ 150 (205)
T 2jaq_A 71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEE 150 (205)
T ss_dssp --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHH
T ss_pred cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhh
Confidence 23499998876421 11 1111 11 358999999999999999984321 1
Q ss_pred -----HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 205 -----EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 205 -----~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
...+...+....+.+.|......+.||++.++++++++|.+.+..
T Consensus 151 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~ 200 (205)
T 2jaq_A 151 LLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNS 200 (205)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 011111222222344453234678899999999999999998864
No 59
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.52 E-value=1.4e-13 Score=122.46 Aligned_cols=166 Identities=11% Similarity=0.049 Sum_probs=101.5
Q ss_pred ccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhc------cCcccHH-------
Q 024390 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR------GEVVSED------- 140 (268)
Q Consensus 74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~------G~~ip~~------- 140 (268)
.|.++++|+|+|+|||||||+|+.|+ .+|+++|++|++.++...++......+.+.+.. |. +...
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~-idr~~l~~~vf 148 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGT-INRKVLGSRVF 148 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSS-BCHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCC-cCHHHHHHHHh
Confidence 34567899999999999999999999 689999999999888766655544444433321 11 1110
Q ss_pred -----------HHH----HHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH--
Q 024390 141 -----------IIF----GLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-- 203 (268)
Q Consensus 141 -----------~~~----~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-- 203 (268)
++. ..+.+++..........+|+||...... .+. ..+|.+|+|++|++++++|+..+-
T Consensus 149 ~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~--~~~d~vI~l~a~~ev~~~Rl~~R~g~ 223 (281)
T 2f6r_A 149 GNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ--SMVHEVWTVVIPETEAVRRIVERDGL 223 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG--GGCSEEEEEECCHHHHHHHHHHHHCC
T ss_pred CCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH--HhCCEEEEEcCCHHHHHHHHHHcCCC
Confidence 111 1112222211001245789999632111 011 247899999999999999984321
Q ss_pred --HHHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 204 --KEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 204 --~~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
++-...+..+ .+...++...+ +.||++.+++++.++|.+++..
T Consensus 224 s~e~~~~ri~~q-~~~~~~~~~AD--~vIdn~~s~eel~~~I~~~l~~ 268 (281)
T 2f6r_A 224 SEAAAQSRLQSQ-MSGQQLVEQSN--VVLSTLWESHVTQSQVEKAWNL 268 (281)
T ss_dssp CHHHHHHHHHTS-CCHHHHHHTCS--EEEECSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CChHhhHhhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 1111122222 22334443333 4578888999999999998864
No 60
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.51 E-value=5.7e-14 Score=118.28 Aligned_cols=158 Identities=11% Similarity=0.098 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH-------HHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-------IIFGLLSKR 149 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~-------~~~~ll~~~ 149 (268)
.+..|+|+|++||||||+++.|+..+|..+++.+++.+... . .....|....+. .+...+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------I-ATMQRGIPLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------H-HHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------H-HHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence 56789999999999999999999999999999877642210 0 011122222211 111222222
Q ss_pred HHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHH--HHHHHHHHHchHHHHHHHhCCcE
Q 024390 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELSKPLEDYYQKQKKL 227 (268)
Q Consensus 150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~~~~l 227 (268)
+. .+..+|+|.......+.+.+.+......+|+|+||.+++.+|+..+-. ...+.+..+.......|.+ ...
T Consensus 98 ~~-----~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~-~~~ 171 (200)
T 4eun_A 98 AD-----AGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATLEALEPD-ESG 171 (200)
T ss_dssp HH-----TTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHCCCCCTT-SCE
T ss_pred Hh-----cCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHhCCCCCC-CCe
Confidence 22 245677776444555555555554556899999999999999832210 0011122222211222322 246
Q ss_pred EEEeCCCCHHHHHHHHHHHHHhh
Q 024390 228 LEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 228 ~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+.||++.+++++.++|.+.|...
T Consensus 172 ~~Id~~~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 172 IVLDLRQPPEQLIERALTWLDIA 194 (200)
T ss_dssp EEEETTSCHHHHHHHHHHHHCCC
T ss_pred EEEECCCCHHHHHHHHHHHHHhc
Confidence 78998899999999999998754
No 61
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.50 E-value=2.1e-13 Score=111.33 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh-ccCcccHHHHHHHHHHHHHcCCc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
.+++|+|+|+|||||||+++.|++.++.++++.++++++... ..++. .++ .|+....+....++.. +..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~----i~~~~g~~~~~~~~~~~l~~-l~~--- 72 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGW----VFDLEGEEGFRDREEKVINE-LTE--- 72 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHH----HHHHHHHHHHHHHHHHHHHH-HHT---
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHH----HHHHHhHHHHHHHHHHHHHH-HHh---
Confidence 346799999999999999999999999999999988876432 12221 111 1222212212233332 221
Q ss_pred cCccEEEEc---CCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH-----------HHHHHHHHHHchHHHHHH
Q 024390 156 RGEIGFILD---GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-----------KEKLEAYAELSKPLEDYY 221 (268)
Q Consensus 156 ~~~~g~IlD---GfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~-----------~~rl~~y~~~~~~l~~~y 221 (268)
..++++. |.+......+.+.. .+++++|+++++++.+|+..+- .+++.. +......+|
T Consensus 73 --~~~~v~~~~~~~~~~~~~~~~l~~---~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~---~~~~r~~~~ 144 (173)
T 1kag_A 73 --KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEA---LANERNPLY 144 (173)
T ss_dssp --SSSEEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHH---HHHHHHHHH
T ss_pred --CCCeEEECCCeEEecHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHH---HHHHHHHHH
Confidence 2344443 44444444444443 4689999999999999984421 222322 222223445
Q ss_pred HhCCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390 222 QKQKKLLEFQVG-SAPVETWQGLLTALHL 249 (268)
Q Consensus 222 ~~~~~l~~Ida~-~s~eev~~~I~~~L~~ 249 (268)
.... .+.||++ .++++++++|.+.+..
T Consensus 145 ~~~a-~~~id~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 145 EEIA-DVTIRTDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp HHHC-SEEC-----CHHHHHHHHHHHHC-
T ss_pred HhhC-CEEEECCCCCHHHHHHHHHHHHHh
Confidence 4333 3567876 7999999999988753
No 62
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.50 E-value=1e-12 Score=107.73 Aligned_cols=152 Identities=9% Similarity=0.078 Sum_probs=91.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH-------HHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-------IIFGLLSKR 149 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~-------~~~~ll~~~ 149 (268)
.+..|+|+|++||||||+++.|++.+|..+++.+++.+.. .+.. ...|..+.+. .+..++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFAM 76 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHHHHH
Confidence 4678999999999999999999999999999998764210 0000 0112211110 111222222
Q ss_pred HHcCCccCccEEEEc-CCcCCHHHHHHHHhhcCCC-eEEEEecCHHHHHhhhhHHH-----HHHHHHHHHHchHHHHH-H
Q 024390 150 LEDGYYRGEIGFILD-GLPRSRIQAEILDQLAEID-LVVNFKCADNFIVTNRGGSL-----KEKLEAYAELSKPLEDY-Y 221 (268)
Q Consensus 150 l~~~~~~~~~g~IlD-GfPr~~~qa~~l~~~~~~d-~vV~Ld~~~e~l~~Rl~~~~-----~~rl~~y~~~~~~l~~~-y 221 (268)
+. .+.++|+| |++. ..+.+.+.+.. ++ .+|+|+||.+++.+|+..+- ...+. .+...+... |
T Consensus 77 ~~-----~~~~~vi~~~~~~-~~~~~~l~~~~-~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~---~~~~~~~~~~~ 146 (175)
T 1knq_A 77 QR-----TNKVSLIVCSALK-KHYRDLLREGN-PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLV---TQFETLQEPGA 146 (175)
T ss_dssp HH-----HCSEEEEECCCCS-HHHHHHHHTTC-TTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHH---HHHHHCCCCCT
T ss_pred Hh-----cCCcEEEEeCchH-HHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhccCCCCchHHHH---HHHHhhhCccc
Confidence 22 24578887 5543 33444554432 45 79999999999999984321 11121 111111111 2
Q ss_pred HhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 222 QKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 222 ~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
.. ...+.||++.+++++.++|.+.+..
T Consensus 147 ~~-~~~~~Id~~~~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 147 DE-TDVLVVDIDQPLEGVVASTIEVIKK 173 (175)
T ss_dssp TC-TTEEEEECSSCHHHHHHHHHHHHHC
T ss_pred CC-CCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 22 2467899889999999999998863
No 63
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.49 E-value=1.4e-13 Score=115.72 Aligned_cols=159 Identities=9% Similarity=0.098 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc-----CcccHHH------------
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-----EVVSEDI------------ 141 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G-----~~ip~~~------------ 141 (268)
++|+|+|++||||||+++.|++ +|++++++|+++++...++......+.+.+... ..+....
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999999 999999999999887654443333343332110 0111111
Q ss_pred ------HHHH----HHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH------HHH
Q 024390 142 ------IFGL----LSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------LKE 205 (268)
Q Consensus 142 ------~~~l----l~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~------~~~ 205 (268)
.... +.+.+... .....+|+||.-..... +. ..+|.+|+|++|++++.+|+..+ +.+
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~--~~~~~vive~~~l~~~~---~~--~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~ 153 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNL--SEDTLFILEASLLVEKG---TY--KNYDKLIVVYAPYEVCKERAIKRGMSEEDFER 153 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHS--CTTCCEEEECSCSTTTT---CG--GGSSEEEEECCCHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHhc--cCCCEEEEEccccccCC---ch--hhCCEEEEEECCHHHHHHHHHHcCCCHHHHHH
Confidence 1111 11122211 11257888874211110 11 24789999999999999998432 222
Q ss_pred HHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 206 KLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 206 rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
|+. .+. +...++...+ +.||++.+++++.++|.+.+....
T Consensus 154 ~~~---~~~-~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 154 RWK---KQM-PIEEKVKYAD--YVIDNSGSIEETYKQVKKVYEELT 193 (204)
T ss_dssp HHT---TSC-CHHHHGGGCS--EECCCSSCHHHHHHHHHHHHHTTC
T ss_pred HHH---hCC-ChhHHHhcCC--EEEECCCCHHHHHHHHHHHHHHHh
Confidence 222 221 2233333333 468888899999999999987544
No 64
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.48 E-value=3.6e-14 Score=126.36 Aligned_cols=131 Identities=14% Similarity=0.088 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
++.|+|+|+|||||||+++.|++++ |+.+|++| .+|..+..... +.. ..+...++..+.+.+..++...+... .
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 76 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG--D 76 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC--T
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc--c
Confidence 3679999999999999999999985 99999998 55554432111 000 00001111112233344444444221 2
Q ss_pred CccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhh---------HHHHHHHHHHHHH
Q 024390 157 GEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG---------GSLKEKLEAYAEL 213 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~---------~~~~~rl~~y~~~ 213 (268)
.+.++|+||++.+..+.+.+.+. ..+..+|+|++|.+++.+|+. +.++++++.|+..
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~e~i~~~~~~~~~~ 146 (301)
T 1ltq_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREY 146 (301)
T ss_dssp TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHHhcc
Confidence 46789999999887776666543 234589999999999999982 3456666666544
No 65
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.48 E-value=1.9e-13 Score=112.76 Aligned_cols=153 Identities=13% Similarity=0.188 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
+++.|+|+|+|||||||+++.|++.+|+.++++++++++.... ...+.. .......++.+...+...+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---- 79 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY-DGYDEE-----YDCPILDEDRVVDELDNQMRE---- 79 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCE-EEEETT-----TTEEEECHHHHHHHHHHHHHH----
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchh-hhhhhh-----hcCccCChHHHHHHHHHHHhc----
Confidence 4567999999999999999999999999999999998875110 000000 001122344444555544442
Q ss_pred CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHH------HHHH--HHHHHHchHHHHHHHhCCcEE
Q 024390 157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL------KEKL--EAYAELSKPLEDYYQKQKKLL 228 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~------~~rl--~~y~~~~~~l~~~y~~~~~l~ 228 (268)
.++|+|+..... +.. ..++.+|+|++|.+++.+|+.++- ..+. +.+..........|. .+.++
T Consensus 80 --g~~vv~~~~~~~-----~~~-~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~i 150 (180)
T 3iij_A 80 --GGVIVDYHGCDF-----FPE-RWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK-EEIVH 150 (180)
T ss_dssp --CCEEEECSCCTT-----SCG-GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEE
T ss_pred --CCEEEEechhhh-----cch-hcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCeEE
Confidence 366777543211 100 127899999999999999984321 1111 111112222333343 24555
Q ss_pred EEeCCCCHHHH---HHHHHHHHHh
Q 024390 229 EFQVGSAPVET---WQGLLTALHL 249 (268)
Q Consensus 229 ~Ida~~s~eev---~~~I~~~L~~ 249 (268)
.++ +.+++++ ..+|.+.|..
T Consensus 151 ~~~-~~~~~ev~~~v~~i~~~l~~ 173 (180)
T 3iij_A 151 QLP-SNKPEELENNVDQILKWIEQ 173 (180)
T ss_dssp EEE-CSSHHHHHHHHHHHHHHHHH
T ss_pred EcC-CCCHHHHHHHHHHHHHHHHH
Confidence 555 6899999 5555555543
No 66
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.45 E-value=3e-13 Score=114.78 Aligned_cols=163 Identities=13% Similarity=0.053 Sum_probs=94.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC------CCccchhHHHHhhcCCCChhH-HHHHHHHhccCcccHHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQDLSPRSSLH-KQIANAVNRGEVVSEDIIFGLLSK 148 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~------~~~is~~dlir~~~~~~~~~g-~~i~~~l~~G~~ip~~~~~~ll~~ 148 (268)
.+++.|+|+|+|||||||+++.|++.++ +.+++. +.++..+.....+. ..-.+.+ . .+...+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~-d~~r~~l~~~~~~~~~~r~~~~-------~-~~~~~~~~ 93 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRNENI-------R-RIAEVAKL 93 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHHHHH-------H-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC-hHHhhhhccccCCCHHHHHHHH-------H-HHHHHHHH
Confidence 3578899999999999999999999886 777775 44554432211110 0000000 0 11122233
Q ss_pred HHHcCCccCccEEEEcCCcCC-HHHHHHHHhh----------cCCCeEEEEecCHHHHHhhhhHHHHHH-HHHHHHHchH
Q 024390 149 RLEDGYYRGEIGFILDGLPRS-RIQAEILDQL----------AEIDLVVNFKCADNFIVTNRGGSLKEK-LEAYAELSKP 216 (268)
Q Consensus 149 ~l~~~~~~~~~g~IlDGfPr~-~~qa~~l~~~----------~~~d~vV~Ld~~~e~l~~Rl~~~~~~r-l~~y~~~~~~ 216 (268)
.+. .+..+|+| ++.. ....+.+.++ ..|+++|+|+||++++.+|+...+..+ -+.|......
T Consensus 94 ~l~-----~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~~~~~ 167 (211)
T 1m7g_A 94 FAD-----SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTG 167 (211)
T ss_dssp HHH-----TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBT
T ss_pred HHH-----CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchhhhhh
Confidence 333 24678888 4431 1223333321 246899999999999999962211111 1122222223
Q ss_pred HHHHHHhC-CcEEEEeCCC-CHHHHHHHHHHHHHhhccc
Q 024390 217 LEDYYQKQ-KKLLEFQVGS-APVETWQGLLTALHLQHIN 253 (268)
Q Consensus 217 l~~~y~~~-~~l~~Ida~~-s~eev~~~I~~~L~~~~~~ 253 (268)
+..+|... ...+.||++. ++++++++|.+.+...++.
T Consensus 168 ~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~~~~~ 206 (211)
T 1m7g_A 168 ISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGYL 206 (211)
T ss_dssp TTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHHTTCS
T ss_pred hhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence 33345421 2247899987 9999999999999876544
No 67
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.44 E-value=1.1e-12 Score=110.01 Aligned_cols=159 Identities=13% Similarity=0.093 Sum_probs=91.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC----CCChh--HHHHHHHH-----------------hccCc
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS----PRSSL--HKQIANAV-----------------NRGEV 136 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~----~~~~~--g~~i~~~l-----------------~~G~~ 136 (268)
.|.|.|++||||||+++.|++.+|+++++.+++.+.... .+.+. ...+.+.+ ..|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 799999999999999999999999999999999876521 11100 01111111 12332
Q ss_pred ccHH-----------------HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390 137 VSED-----------------IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 137 ip~~-----------------~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
++.+ .+.+.+.+.+... . .++|+||.... + . -...+|++|||++|++++++|+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~~~vi~g~~~~--~--~--~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEV---P-PPFVAEGRDMG--T--A--VFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHS---C-SCEEEEESSCC--C--C--CCTTCSEEEEEECCHHHHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHh---c-CCEEEEcccee--E--E--EecCCcEEEEEECCHHHHHHHH
Confidence 2210 1112222222222 2 67899986322 0 0 0134789999999999999998
Q ss_pred hHHHHHHHHHHHHHchHHHHHH----HhCCcEEEEeCCC-CHHHHHHHHHHHHH
Q 024390 200 GGSLKEKLEAYAELSKPLEDYY----QKQKKLLEFQVGS-APVETWQGLLTALH 248 (268)
Q Consensus 200 ~~~~~~rl~~y~~~~~~l~~~y----~~~~~l~~Ida~~-s~eev~~~I~~~L~ 248 (268)
..+.....+...+........| ......+.||++. +++++.++|.+.+.
T Consensus 154 ~~r~~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 154 ARERPQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp HHTSSSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred HhhcccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 4321100111111111111112 1223347889875 99999999998774
No 68
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.43 E-value=8.8e-13 Score=110.12 Aligned_cols=159 Identities=9% Similarity=0.038 Sum_probs=94.2
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHh----ccCcccHHHHH-------
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN----RGEVVSEDIIF------- 143 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~----~G~~ip~~~~~------- 143 (268)
+.++++|+|.|++||||||+++.|++. |+++++++++++... ++.+ ..+.+.+. +|. +....+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~-i~~~~l~~~~~~~~ 79 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGR-LDRRALARLVFSDP 79 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTE-ECHHHHHHHHTTSH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCC-cCHHHHHHHHhCCH
Confidence 456789999999999999999999998 999999999988764 2211 22222221 121 1221111
Q ss_pred -----------HHH-HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHH
Q 024390 144 -----------GLL-SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLK 204 (268)
Q Consensus 144 -----------~ll-~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~ 204 (268)
.++ .+.+......++..+|+|+ |.-.. ..+. ..+|.+|+|+++.+++++|+.. .+.
T Consensus 80 ~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~--~~~~--~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~ 154 (203)
T 1uf9_A 80 ERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFE--KGWE--GRLHGTLLVAAPLEERVRRVMARSGLSREEVL 154 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTT--TTCG--GGSSEEEEECCCHHHHHHHHHTTTCCTTHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceec--cCch--hhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence 111 1222211001246678886 32111 0011 2478999999999999999832 222
Q ss_pred HHHHHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 205 EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 205 ~rl~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
+++. .+. +...++...+ +.||++.+++++.++|.+.+..
T Consensus 155 ~~i~---~~~-~~~~~~~~ad--~vId~~~~~~~~~~~i~~~~~~ 193 (203)
T 1uf9_A 155 ARER---AQM-PEEEKRKRAT--WVLENTGSLEDLERALKAVLAE 193 (203)
T ss_dssp HHHT---TSC-CHHHHHHHCS--EEECCSSHHHHHHHHHHHHHHS
T ss_pred HHHH---HCC-ChhHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 2222 111 1222233333 3688878999999999998864
No 69
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.42 E-value=1.6e-12 Score=107.75 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=89.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHH--HHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL--LSK 148 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~l--l~~ 148 (268)
.+++.|+|+|+|||||||+++.|++.++ +.+++. |.++..+.....+...-+ ......+ +..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~r----------~~~~~~~~~~~~ 79 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG-DWARTTVSEGAGFTREER----------LRHLKRIAWIAR 79 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHTTTTTTCCCCHHHH----------HHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH-HHHHHHHhhccCCChhhH----------HHHHHHHHHHHH
Confidence 4678999999999999999999999885 234554 444554332111100000 0011111 111
Q ss_pred HHHcCCccCccEEEEcCCcCCHHHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHHHHHHHH-HHHHHchHHHHHHHh
Q 024390 149 RLEDGYYRGEIGFILDGLPRSRIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGSLKEKLE-AYAELSKPLEDYYQK 223 (268)
Q Consensus 149 ~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~-~y~~~~~~l~~~y~~ 223 (268)
.+.. .+..+|.|+......+.+.+.+ ...++++|+|++|++++.+|+......+.. ...+....+.+.|..
T Consensus 80 ~~~~----~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~ 155 (186)
T 2yvu_A 80 LLAR----NGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEP 155 (186)
T ss_dssp HHHT----TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCC
T ss_pred HHHh----CCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccC
Confidence 1221 2445677876544333333332 234789999999999999998432222211 000011112233432
Q ss_pred -CCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390 224 -QKKLLEFQVG-SAPVETWQGLLTALHL 249 (268)
Q Consensus 224 -~~~l~~Ida~-~s~eev~~~I~~~L~~ 249 (268)
....+.||++ .+++++.++|.+.+..
T Consensus 156 ~~~~~~~Id~~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 156 PENPQLVLDTESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp CSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 1235788987 7999999999998864
No 70
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.42 E-value=4.4e-13 Score=117.58 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=45.2
Q ss_pred CCCeEEEEecCHHHHHhhhhHHH---HH-HHHHHHHHchHHH-------------HHHHhCCcEEEEeCCCCHHHHHHHH
Q 024390 181 EIDLVVNFKCADNFIVTNRGGSL---KE-KLEAYAELSKPLE-------------DYYQKQKKLLEFQVGSAPVETWQGL 243 (268)
Q Consensus 181 ~~d~vV~Ld~~~e~l~~Rl~~~~---~~-rl~~y~~~~~~l~-------------~~y~~~~~l~~Ida~~s~eev~~~I 243 (268)
.||++|+|++|++++++|+..+- .. .-..|.+...... .+|.+ ..+++||++.++++|+++|
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~~~I 252 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKYESL 252 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHHHHH
Confidence 79999999999999999983320 00 0011222211111 11222 4588999999999999999
Q ss_pred HHHHHhh
Q 024390 244 LTALHLQ 250 (268)
Q Consensus 244 ~~~L~~~ 250 (268)
.+.|...
T Consensus 253 ~~~l~~~ 259 (263)
T 1p5z_B 253 VEKVKEF 259 (263)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 71
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.40 E-value=3.6e-12 Score=109.96 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=96.9
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc----CCCCh------hHHHHHH--------------H
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL----SPRSS------LHKQIAN--------------A 130 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~----~~~~~------~g~~i~~--------------~ 130 (268)
+.++.+|+|+|++||||||+++.|++.+|+++++.|++++... ..+.+ +...+.. .
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 92 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLV 92 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceE
Confidence 3577889999999999999999999999999999999998632 12222 1111110 1
Q ss_pred HhccCccc----HHHHH-------------HHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHH
Q 024390 131 VNRGEVVS----EDIIF-------------GLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADN 193 (268)
Q Consensus 131 l~~G~~ip----~~~~~-------------~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e 193 (268)
+..|+.++ .+.+. ..+.+.+... ..+.++|+||+.... .. +..++++|+|+++++
T Consensus 93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~--~~~~~~v~~g~~~~~---~~---l~~~d~vi~L~a~~e 164 (236)
T 1q3t_A 93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEI--AQQGGIVMDGRDIGT---VV---LPQAELKIFLVASVD 164 (236)
T ss_dssp EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHH--HTTSCEEEECSSCSS---SS---GGGCSEEEEEECCHH
T ss_pred eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHh--cccCCEEEECCcchh---hh---ccCCCEEEEEECCHH
Confidence 12343221 11121 1222222111 235689999986531 01 124689999999999
Q ss_pred HHHhhhhHHHHHHH---------HHHHHHchH-----HHHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390 194 FIVTNRGGSLKEKL---------EAYAELSKP-----LEDYYQKQKKLLEFQVG-SAPVETWQGLLTALHL 249 (268)
Q Consensus 194 ~l~~Rl~~~~~~rl---------~~y~~~~~~-----l~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~ 249 (268)
++++|+..+..+|- +.+.+...+ +..+|.. ...+.||++ .++++++++|.+.+..
T Consensus 165 ~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~-~d~~vId~~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 165 ERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQA-EDAVYLDTTGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCC-TTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhccccccccc-CCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 99999622211111 111110000 0012221 233678887 5999999999998864
No 72
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.39 E-value=4.7e-13 Score=113.66 Aligned_cols=163 Identities=13% Similarity=0.074 Sum_probs=93.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh----cCCCChhHHHHHHH-------H-----------hccC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD----LSPRSSLHKQIANA-------V-----------NRGE 135 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~----~~~~~~~g~~i~~~-------l-----------~~G~ 135 (268)
++.|+|+|++||||||+++.|++.+|++++++|++++.. ...+. +..+.+. + ..|+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~ 80 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDNE 80 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCCc
Confidence 467999999999999999999999999999999998863 12221 2223332 1 2343
Q ss_pred cccHH----HHHH---------HHHHHHHcC--CccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh
Q 024390 136 VVSED----IIFG---------LLSKRLEDG--YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG 200 (268)
Q Consensus 136 ~ip~~----~~~~---------ll~~~l~~~--~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~ 200 (268)
.++.+ .+.. .+.+.+... ....+.++|++|- .... .-+..++++|+|++|.+++.+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~--~~~~----~~~~~~~~vi~l~a~~e~~~~R~~ 154 (219)
T 2h92_A 81 DVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGR--DIGT----VVLPDADLKVYMIASVEERAERRY 154 (219)
T ss_dssp ECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEES--SCCC----CCCTTCSEEEEEECCHHHHHHHHH
T ss_pred cchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcC--Cccc----eecCCCCEEEEEECCHHHHHHHHH
Confidence 32211 1111 111111100 0113467999983 1100 001356899999999999999973
Q ss_pred HHHHHH---------HHHHHHHchHH-----HHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHh
Q 024390 201 GSLKEK---------LEAYAELSKPL-----EDYYQKQKKLLEFQVG-SAPVETWQGLLTALHL 249 (268)
Q Consensus 201 ~~~~~r---------l~~y~~~~~~l-----~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~ 249 (268)
.....| .+.+.++.... ..+|.. ...+.||++ .++++++++|.+.+..
T Consensus 155 ~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~~~I~~~l~~ 217 (219)
T 2h92_A 155 KDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVTDEILAMVSQ 217 (219)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHHHHHHHHHHT
T ss_pred HHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHHHHHHHHHhc
Confidence 221111 01111111000 022221 233678876 5999999999998864
No 73
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.38 E-value=3.8e-13 Score=113.49 Aligned_cols=164 Identities=11% Similarity=0.037 Sum_probs=97.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcCCCChhHHHHHHHHhc-c--CcccHHHHHHHHHHHHHc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNR-G--EVVSEDIIFGLLSKRLED 152 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~~~~~~g~~i~~~l~~-G--~~ip~~~~~~ll~~~l~~ 152 (268)
++.+|.|.|++||||||+++.|++.+ ++.+++.+++++....-. .+ ...... . ..+........+...+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 94 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIE--TD---KNGFLQYDVLEALNMEKMMSAISCWMES 94 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSC--BC---TTSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhh--cc---ccCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999 899999998775431100 00 000000 0 001112222222222221
Q ss_pred ---CC-------ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH------HHHHHH-HHHHHch
Q 024390 153 ---GY-------YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------LKEKLE-AYAELSK 215 (268)
Q Consensus 153 ---~~-------~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~------~~~rl~-~y~~~~~ 215 (268)
.. ......+|+||++... .+.+ ...+|.+|+++++.+++.+|+..+ ..+++. .+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~~~--~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~ 170 (207)
T 2qt1_A 95 ARHSVVSTDQESAEEIPILIIEGFLLFN--YKPL--DTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYL 170 (207)
T ss_dssp HTTSSCCC-----CCCCEEEEECTTCTT--CGGG--TTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHH
T ss_pred CCCCCcCCCeeecCCCCEEEEeehHHcC--cHHH--HHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHH
Confidence 00 0124678999965321 1111 135799999999999999997321 011222 1111222
Q ss_pred HHHHHHHhC-CcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 216 PLEDYYQKQ-KKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 216 ~l~~~y~~~-~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
...+.+... +.++.||++.++++++++|.+.+..
T Consensus 171 ~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 171 KYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp HHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 233445543 5678899999999999999998864
No 74
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.37 E-value=1.1e-12 Score=114.43 Aligned_cols=164 Identities=14% Similarity=0.082 Sum_probs=94.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC----------ccchhHHHHhhcCCCChhHHHHHHHHhccCc-------cc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP----------RISMSSIVRQDLSPRSSLHKQIANAVNRGEV-------VS 138 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~----------~is~~dlir~~~~~~~~~g~~i~~~l~~G~~-------ip 138 (268)
.++++|.|.|++||||||+|+.|++.+|++ ++++|++++... ...+. ....|.. ..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~------~~~~~-~~~~g~~~f~~~~~~d 92 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT------SEQKA-KALKGQFNFDHPDAFD 92 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC------HHHHH-HHHTTCSCTTSGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC------hhhhh-hhccCCCCCCCcchhh
Confidence 356789999999999999999999999987 699999887421 11111 1122322 22
Q ss_pred HHHHHHHHHHHHHcCC-------------------ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhh
Q 024390 139 EDIIFGLLSKRLEDGY-------------------YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 139 ~~~~~~ll~~~l~~~~-------------------~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
.+.+.+.|........ ......+|+||.+.... ..+.. .+|.+|+|+++.+++++|+
T Consensus 93 ~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~--~~~~~--~~d~vi~l~~~~e~~~~R~ 168 (252)
T 1uj2_A 93 NELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRD--LFQMKLFVDTDADTRLSRR 168 (252)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHH--HCSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC--HHHHH--hcCeeEEEeCCHHHHHHHH
Confidence 2233444443321100 01346799999654211 11222 3589999999999999998
Q ss_pred hHHH--------HHHHHHHHHHchH-HHH----HHHhCCcEE--EEeCCCCHHHHHHHHHHHHHhh
Q 024390 200 GGSL--------KEKLEAYAELSKP-LED----YYQKQKKLL--EFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 200 ~~~~--------~~rl~~y~~~~~~-l~~----~y~~~~~l~--~Ida~~s~eev~~~I~~~L~~~ 250 (268)
..+- ++-.+.|..+..+ ... ++...+.++ .||++.++++++++|.+.+...
T Consensus 169 ~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~ 234 (252)
T 1uj2_A 169 VLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGG 234 (252)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccc
Confidence 4321 1111122222211 111 111123333 2487789999999999998754
No 75
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.34 E-value=1.9e-11 Score=106.77 Aligned_cols=167 Identities=16% Similarity=0.084 Sum_probs=93.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc----CCC-----ChhHHHHHHHH----h----------c
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL----SPR-----SSLHKQIANAV----N----------R 133 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~----~~~-----~~~g~~i~~~l----~----------~ 133 (268)
.+.+|.|+|++||||||+++.|++++|+.+++.|.++|... ..+ ...-..+...+ . .
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE 105 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence 56789999999999999999999999999999999985532 111 11011111100 0 0
Q ss_pred cCcccH-----------------HHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHH
Q 024390 134 GEVVSE-----------------DIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIV 196 (268)
Q Consensus 134 G~~ip~-----------------~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~ 196 (268)
+..+.+ ..+.+.+....... ..+.|+|+||--.... -+...+++|||++|.+++.
T Consensus 106 ~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~--a~~~~~V~~gr~~~~~------v~~~~~~~ifl~A~~e~r~ 177 (252)
T 4e22_A 106 GEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAF--REAPGLIADGRDMGTI------VFPDAPVKIFLDASSQERA 177 (252)
T ss_dssp TEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTT--CCSSCEEEEESSCCCC------CSTTCSEEEEEECCHHHHH
T ss_pred CeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hhCCCEEEEeceecee------ecCCCCEEEEEECCHHHHH
Confidence 001111 11223333333332 3467899987311000 0124689999999999999
Q ss_pred hhhhHHHHHHHH--HHHHHchHH--------HH---HHHhCCcEEEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390 197 TNRGGSLKEKLE--AYAELSKPL--------ED---YYQKQKKLLEFQVG-SAPVETWQGLLTALHLQH 251 (268)
Q Consensus 197 ~Rl~~~~~~rl~--~y~~~~~~l--------~~---~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~~ 251 (268)
+|....+..+-. .+.+....+ .. .+.....-+.||++ .+++++.++|.+.+....
T Consensus 178 ~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~~ 246 (252)
T 4e22_A 178 HRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRIL 246 (252)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHHHHHHHh
Confidence 997432222100 011100000 00 01111123678866 489999999999998653
No 76
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.34 E-value=4.2e-11 Score=101.43 Aligned_cols=162 Identities=10% Similarity=0.044 Sum_probs=89.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCccc----------------HHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS----------------EDI 141 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip----------------~~~ 141 (268)
.++|.|.|++||||||+++.||+++|++++| +++++...... .+. ....-..|+..+ .+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~-g~~--~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDG-RYS--KEVLERFDEKPMNFAFIPVPAGGTTISLEQD 81 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC------------------------------------CH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhc-CCC--HHHHHHHhhhchhHHHHHhccccccccccHH
Confidence 4689999999999999999999999999999 89987643221 111 000101111111 011
Q ss_pred HHHHHHHHHHcCCcc--CccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhH-------HHHHHHHHHHH
Q 024390 142 IFGLLSKRLEDGYYR--GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKLEAYAE 212 (268)
Q Consensus 142 ~~~ll~~~l~~~~~~--~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~~~rl~~y~~ 212 (268)
+.....+.+.+. . ...++|++|. .-. -.+.. ..-.++|||++|.+++.+|+.+ ...+++..-.+
T Consensus 82 ~~~~~~~~i~~l--a~~~~~~~Vi~Gr--~g~--~vl~~-~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~ 154 (201)
T 3fdi_A 82 IAIRQFNFIRKK--ANEEKESFVIVGR--CAE--EILSD-NPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDK 154 (201)
T ss_dssp HHHHHHHHHHHH--HHTSCCCEEEEST--THH--HHTTT-CTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhhcCCCEEEEEC--Ccc--hhcCC-CCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 112222322221 1 2356888874 111 11111 1125899999999999999832 22333333223
Q ss_pred HchHHHHHHHh------CCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390 213 LSKPLEDYYQK------QKKLLEFQVG-SAPVETWQGLLTALHLQ 250 (268)
Q Consensus 213 ~~~~l~~~y~~------~~~l~~Ida~-~s~eev~~~I~~~L~~~ 250 (268)
...+...+|.. ...-+.||++ .+++++.+.|.+.+..+
T Consensus 155 ~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~ 199 (201)
T 3fdi_A 155 MRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR 199 (201)
T ss_dssp HHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence 33333332211 1122567765 69999999999998753
No 77
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.31 E-value=5e-12 Score=106.55 Aligned_cols=150 Identities=10% Similarity=0.090 Sum_probs=89.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhcc----CcccH-------------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG----EVVSE------------- 139 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G----~~ip~------------- 139 (268)
..++|.|+|++||||||+++.|++.+|+++|++|+++++...+ ..+.+.+.+... ..+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence 5678999999999999999999999999999999998886532 112222222110 00110
Q ss_pred -----HHHHHHH----HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHHHHHHHHHH
Q 024390 140 -----DIIFGLL----SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAY 210 (268)
Q Consensus 140 -----~~~~~ll----~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y 210 (268)
.+....+ ..++.. .+..+|+|+ |.-.+. . +. ..+|.+|+++||+++.++|+ +..++..|
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~~----~~~~vv~d~-pll~e~-~-~~--~~~d~vi~v~a~~e~r~~Rl---i~~q~~~~ 155 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIINK----TSGLIVIEA-ALLKRM-G-LD--QLCDHVITVVASRETILKRN---READRRLK 155 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CCEEEEEEC-TTTTTT-T-GG--GGCSEEEEEECCHHHHHHHC---SSHHHHHT
T ss_pred HHHHHhhhCHHHHHHHHHHHHH----cCCEEEEEE-eceeec-C-hH--HhCCEEEEEECCHHHHHHHH---HHhcCCch
Confidence 1111112 222222 134566774 532221 1 22 24689999999999999998 11111111
Q ss_pred HHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 211 AELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 211 ~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
. .+ ..+.. -+.|+.+.+++++.++|.+++..
T Consensus 156 ~------~~-~~~~A-D~vI~n~~~~~~l~~~v~~~~~~ 186 (192)
T 2grj_A 156 F------QE-DIVPQ-GIVVANNSTLEDLEKKVEEVMKL 186 (192)
T ss_dssp T------CT-TCCCC-SEEEECSSCHHHHHHHHHHHHHH
T ss_pred h------hh-HHhcC-CEEEECCCCHHHHHHHHHHHHHH
Confidence 0 00 01111 24577788999999999988753
No 78
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.30 E-value=1.4e-11 Score=103.90 Aligned_cols=162 Identities=9% Similarity=0.015 Sum_probs=91.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhcCC---CCh----hHHHHHHHHhccCcccHH-------
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLSP---RSS----LHKQIANAVNRGEVVSED------- 140 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~~~---~~~----~g~~i~~~l~~G~~ip~~------- 140 (268)
.+++.|+|+|+|||||||+++.|++.++- .+.+.....|..... +.. ....+...+..|..+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 46778999999999999999999998853 233333333322110 000 012233333334322110
Q ss_pred -HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcC--CCeEEEEe-cCHHHHHhhhh-------HHHHHHHHH
Q 024390 141 -IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE--IDLVVNFK-CADNFIVTNRG-------GSLKEKLEA 209 (268)
Q Consensus 141 -~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~--~d~vV~Ld-~~~e~l~~Rl~-------~~~~~rl~~ 209 (268)
.....+...+. .+..+|+|+.+.... .+.+... -.++|||+ +|.+++.+|+. +.+++|+..
T Consensus 90 ~~~~~~i~~~l~-----~g~~vi~d~~~~~~~---~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~ 161 (204)
T 2qor_A 90 GTLKSEYDLAVG-----EGKICLFEMNINGVK---QLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQE 161 (204)
T ss_dssp EEEHHHHHHHHH-----TTCEEEEECCHHHHH---HHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-----cCCeEEEEECHHHHH---HHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 00122333333 367899998664333 2333222 23799998 99999999982 345666655
Q ss_pred HHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 210 YAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 210 y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
......+. |......+.+| + ++++++++|.++|...
T Consensus 162 ~~~~~~~~---~~~~~d~vi~n-~-~~e~~~~~i~~~i~~~ 197 (204)
T 2qor_A 162 LTREMDEA---DKVGFNYFIVN-D-DLARTYAELREYLLGS 197 (204)
T ss_dssp HHHHHHHH---HHHTCSEEEEC-S-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---hhccCcEEEEC-c-CHHHHHHHHHHHHHHH
Confidence 44332211 22222233444 4 8999999999999754
No 79
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.30 E-value=8.9e-11 Score=101.19 Aligned_cols=168 Identities=13% Similarity=0.087 Sum_probs=93.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCC-CCh------hHHHHHH-HH---hcc-----------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSS------LHKQIAN-AV---NRG----------- 134 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~-~~~------~g~~i~~-~l---~~G----------- 134 (268)
..++|.|.|++||||||+++.||+++|+++++ +++++..... +-+ .++.... .+ ..+
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC------------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence 35789999999999999999999999999999 6777664422 111 1111110 00 000
Q ss_pred --CcccHHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHH--hhcCCCeEEEEecCHHHHHhhhhH-------HH
Q 024390 135 --EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILD--QLAEIDLVVNFKCADNFIVTNRGG-------SL 203 (268)
Q Consensus 135 --~~ip~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~--~~~~~d~vV~Ld~~~e~l~~Rl~~-------~~ 203 (268)
....++.+.....+.+.+. ....++|+.|. .-. -.+. .-..-.++|||++|.+++.+|+.+ ..
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~l--a~~~~~Vi~Gr--ggg--~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a 165 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMREL--AESEPCIFVGR--AAG--YVLDQDEDIERLIRIFVYTDKVKKVQRVMEVDCIDEERA 165 (223)
T ss_dssp ------HHHHHHHHHHHHHHH--HHHSCEEEEST--THH--HHHHHCTTCCEEEEEEEECCHHHHHHHHHHHHTCCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHH--HhCCCEEEEeC--Ccc--hhcccccCCCCeEEEEEECCHHHHHHHHHHhcCCCHHHH
Confidence 0011222233333333322 12345777764 111 1121 111125899999999999999832 23
Q ss_pred HHHHHHHHHHchHHHHHHHh------CCcEEEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390 204 KEKLEAYAELSKPLEDYYQK------QKKLLEFQVG-SAPVETWQGLLTALHLQH 251 (268)
Q Consensus 204 ~~rl~~y~~~~~~l~~~y~~------~~~l~~Ida~-~s~eev~~~I~~~L~~~~ 251 (268)
.+++....++..+...+|-. ...-+.||++ .+++++.+.|.+.+..+.
T Consensus 166 ~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~~~ 220 (223)
T 3hdt_A 166 KRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRLKG 220 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 34444434444444443311 1123567865 699999999999998653
No 80
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.29 E-value=9.9e-11 Score=99.99 Aligned_cols=163 Identities=11% Similarity=0.014 Sum_probs=103.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccC-----cccH------------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-----VVSE------------ 139 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~-----~ip~------------ 139 (268)
...-|.|+|.+||||||+++.|++ +|+++||+|.+.++...++.+....+.+.+..+. .+..
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~ 86 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED 86 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence 455799999999999999999998 9999999999999988777766666666553211 1221
Q ss_pred ------HHHHHHHHHHHHcCC-ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH-------HHH
Q 024390 140 ------DIIFGLLSKRLEDGY-YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LKE 205 (268)
Q Consensus 140 ------~~~~~ll~~~l~~~~-~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~-------~~~ 205 (268)
.++-.++.+++.... .....-+|+|. |.-.+.. .+. ..+|.+|+++||+++.++|+.++ ..+
T Consensus 87 ~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~-~~~--~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ 162 (210)
T 4i1u_A 87 ARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESR-NWK--ARCDRVLVVDCPVDTQIARVMQRNGFTREQVEA 162 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCH-HHH--HHCSEEEEEECCHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccC-Ccc--ccCCeEEEEECCHHHHHHHHHhcCCCCHHHHHH
Confidence 122222222222110 01233466774 5322201 122 24799999999999999999433 233
Q ss_pred HHHHHHHHchHHHHHHHhCCcEEEEeCC-CCHHHHHHHHHHHHHhh
Q 024390 206 KLEAYAELSKPLEDYYQKQKKLLEFQVG-SAPVETWQGLLTALHLQ 250 (268)
Q Consensus 206 rl~~y~~~~~~l~~~y~~~~~l~~Ida~-~s~eev~~~I~~~L~~~ 250 (268)
|+ ..+. +..+.+...+ ++|+.+ .+++++.++|..++...
T Consensus 163 ri---~~Q~-~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~~~~ 202 (210)
T 4i1u_A 163 II---ARQA-TREARLAAAD--DVIVNDAATPDALAVQVDALHQRY 202 (210)
T ss_dssp HH---HHSC-CHHHHHHTCS--EEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HH---HHcC-ChHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHHH
Confidence 33 2333 2344343333 456778 89999999999888653
No 81
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.28 E-value=1.6e-11 Score=100.49 Aligned_cols=161 Identities=10% Similarity=0.011 Sum_probs=83.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHhhcCCCCh---hHHHHHHHH-hccCcccHHHH---HHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQDLSPRSS---LHKQIANAV-NRGEVVSEDII---FGLLSK 148 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir~~~~~~~~---~g~~i~~~l-~~G~~ip~~~~---~~ll~~ 148 (268)
++.|+|+|+|||||||+++.|+++++..++ ++++++.. ...... .+..+.+.. ..+........ ...+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA-MPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH-SCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh-cchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 468999999999999999999999987655 46665543 221100 000000000 00000001111 111222
Q ss_pred HHHcCCccCccEEEEcCCcC-CHHHHH-HHHhhcC-CCeEEEEecCHHHHHhhhhHHHHHHHHHHHHHchHHHHHHHhCC
Q 024390 149 RLEDGYYRGEIGFILDGLPR-SRIQAE-ILDQLAE-IDLVVNFKCADNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQK 225 (268)
Q Consensus 149 ~l~~~~~~~~~g~IlDGfPr-~~~qa~-~l~~~~~-~d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~~~ 225 (268)
.+. .+..+|+|+... ...+.+ ..+.+.. +..+|+|+||.+++.+|+..+-..-......+...+ +....
T Consensus 82 ~~~-----~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~~~~~~~~~~~~~---~~~~~ 153 (178)
T 1qhx_A 82 MAR-----AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVAGMAAKQAYVV---HEGVE 153 (178)
T ss_dssp HHH-----TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCTTHHHHHTTGG---GTTCC
T ss_pred HHh-----cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCcccchhhhhchhh---ccCCC
Confidence 222 345789998542 222122 2222323 336889999999999998432110001111111111 11112
Q ss_pred cEEEEeCC-CCHHHHHHHHHHHH
Q 024390 226 KLLEFQVG-SAPVETWQGLLTAL 247 (268)
Q Consensus 226 ~l~~Ida~-~s~eev~~~I~~~L 247 (268)
.-+.||++ .+++++.++|.+.|
T Consensus 154 ~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 154 YDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp CSEEEETTSSCHHHHHHHHHTTC
T ss_pred CcEEEECCCCCHHHHHHHHHHHh
Confidence 33567876 59999999998654
No 82
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.23 E-value=8.8e-13 Score=111.17 Aligned_cols=164 Identities=16% Similarity=0.127 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChh-HHHHHHHHhc--cCcccHHHHHHHH--HH-----
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSL-HKQIANAVNR--GEVVSEDIIFGLL--SK----- 148 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~-g~~i~~~l~~--G~~ip~~~~~~ll--~~----- 148 (268)
+.|+|+|++||||||+++.|++.++...+++. +++.. ..+++. +..++..+.. |...++.....++ .+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-TLAFP-RYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV 78 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-EEESS-EEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EEeec-CCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence 46999999999999999999999864332221 00100 000111 2222222211 1111111111111 11
Q ss_pred -HHHcCCccCccEEEEcCCcCCH--HHH------------HHHHhh-------cCCCeEEEEecCHHHHHhhhhHHHH--
Q 024390 149 -RLEDGYYRGEIGFILDGLPRSR--IQA------------EILDQL-------AEIDLVVNFKCADNFIVTNRGGSLK-- 204 (268)
Q Consensus 149 -~l~~~~~~~~~g~IlDGfPr~~--~qa------------~~l~~~-------~~~d~vV~Ld~~~e~l~~Rl~~~~~-- 204 (268)
.+... ...+..+|+|+++.+. .|. +.+... ..||.+|+|++|++++.+|+..+-.
T Consensus 79 ~~i~~~-l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~ 157 (214)
T 1gtv_A 79 HTIQGL-CRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRD 157 (214)
T ss_dssp HHHHHE-EEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEB
T ss_pred HHHHHH-hhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccc
Confidence 11111 1235668899998653 121 223322 2689999999999999999854321
Q ss_pred -----HHH---HHHHHHchHHHHHHHh-C--CcEEEEeCCCCHHHHHHHHHH
Q 024390 205 -----EKL---EAYAELSKPLEDYYQK-Q--KKLLEFQVGSAPVETWQGLLT 245 (268)
Q Consensus 205 -----~rl---~~y~~~~~~l~~~y~~-~--~~l~~Ida~~s~eev~~~I~~ 245 (268)
.++ ..|.+........+.+ . ..+++||++.++++++++|.+
T Consensus 158 ~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 158 PGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp BEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhcC
Confidence 111 1333332222111111 1 356889999999999988753
No 83
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.22 E-value=7.2e-11 Score=97.13 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=84.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCccchh-HHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHH--HHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SKR 149 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~-dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll--~~~ 149 (268)
.+++.|+|+|++||||||+++.|++.+ |++++.++ +.++..+........ .. .++.+.++. ...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~ 72 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSP------ED----REENVRRIAEVAKL 72 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSH------HH----HHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccc------cc----HHHHHHHHHHHHHH
Confidence 467899999999999999999999998 98887653 555543321110000 00 011111111 111
Q ss_pred HHcCCccCccEEEEcCCcCC-H---HHHHHH-HhhcCCCeEEEEecCHHHHHhhhhHHHHHHHH--HHHHHchHHHHHHH
Q 024390 150 LEDGYYRGEIGFILDGLPRS-R---IQAEIL-DQLAEIDLVVNFKCADNFIVTNRGGSLKEKLE--AYAELSKPLEDYYQ 222 (268)
Q Consensus 150 l~~~~~~~~~g~IlDGfPr~-~---~qa~~l-~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~rl~--~y~~~~~~l~~~y~ 222 (268)
+.. .+ .+++.|+... . .....+ .....++.+|+|+||++++.+|+...+.++.. .+..+ ..+...|.
T Consensus 73 ~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~ 146 (179)
T 2pez_A 73 FAD----AG-LVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF-TGIDSEYE 146 (179)
T ss_dssp HHH----TT-CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSC-BTTTBCCC
T ss_pred HHH----CC-CEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhccccccc-ccCCcccc
Confidence 212 12 2344343222 1 121222 22235789999999999999998532111100 00000 00111222
Q ss_pred hC--CcEEEEeCCCCHHHHHHHHHHHHHhh
Q 024390 223 KQ--KKLLEFQVGSAPVETWQGLLTALHLQ 250 (268)
Q Consensus 223 ~~--~~l~~Ida~~s~eev~~~I~~~L~~~ 250 (268)
+. ..++..+++.+++++.++|.+.+...
T Consensus 147 ~~~~ad~vid~~~~~~~~~~~~i~~~l~~~ 176 (179)
T 2pez_A 147 KPEAPELVLKTDSCDVNDCVQQVVELLQER 176 (179)
T ss_dssp CCSSCSEEEETTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEECCCCCHHHHHHHHHHHHHHh
Confidence 11 22433344579999999999998754
No 84
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.16 E-value=7.1e-11 Score=103.06 Aligned_cols=119 Identities=11% Similarity=0.040 Sum_probs=69.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHHHHhhcCCC----ChhHHHHHHHHhccCcccHHHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVRQDLSPR----SSLHKQIANAVNRGEVVSEDIIFGLLSKR 149 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~--~~~is~~dlir~~~~~~----~~~g~~i~~~l~~G~~ip~~~~~~ll~~~ 149 (268)
.+++.|+|+|+|||||||+++.|++.++ ..+++. |.+|...... ...|..+.+.... .....+..++...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~-D~~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~~ 105 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG-DSFRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTKL 105 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG-GGGGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec-HHHHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHHH
Confidence 4668899999999999999999999997 345555 5555543210 0011111111110 0011222233322
Q ss_pred HHcCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHH
Q 024390 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSL 203 (268)
Q Consensus 150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~ 203 (268)
+. .+.+||+||++++..+...+.+. ...-.++++++|.+++.+|...+.
T Consensus 106 ~~-----~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 106 SS-----LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HH-----TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred Hh-----cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 22 24589999999877664443322 222236788999999999985443
No 85
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.16 E-value=3.2e-10 Score=98.35 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=36.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~ 116 (268)
.+++.|+|.|++||||||+++.|++++|+.+++.|++++..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 45678999999999999999999999999999999998774
No 86
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.15 E-value=1.5e-10 Score=103.14 Aligned_cols=112 Identities=11% Similarity=0.063 Sum_probs=71.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHhhcCCCChhHHHHHHHHhccCcc-------cHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-------SEDIIFGLL 146 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l--~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~i-------p~~~~~~ll 146 (268)
.++..|+|+|+|||||||+++.|++++ ++.+||. |.+|...... ...+... |+.. ...+...++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~-D~~R~~~~~~---~~~~~~~---~~~a~~~~~~~~~~~~~~~v 103 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN-DTFKQQHPNF---DELVKLY---EKDVVKHVTPYSNRMTEAII 103 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT-HHHHTTSTTH---HHHHHHH---GGGCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec-hHhHHhchhh---HHHHHHc---cchhhhhhhHHHHHHHHHHH
Confidence 467889999999999999999999998 7888887 4555543321 1111111 1111 122233444
Q ss_pred HHHHHcCCccCccEEEEcCCcCCHHHHHHHHh-h---cCCCeEEEEecCHHHH----Hhhh
Q 024390 147 SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-L---AEIDLVVNFKCADNFI----VTNR 199 (268)
Q Consensus 147 ~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~-~---~~~d~vV~Ld~~~e~l----~~Rl 199 (268)
...+.. +..+|+|+.+....+...+.+ + .....+++|.+|++++ .+|+
T Consensus 104 ~~~l~~-----g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl 159 (287)
T 1gvn_B 104 SRLSDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERY 159 (287)
T ss_dssp HHHHHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHhc-----CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHH
Confidence 444443 567999999888665444322 2 2233479999999999 7776
No 87
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.12 E-value=5e-10 Score=93.96 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=88.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--ccchhHHHHhhcCCCChhH-HHHHHHHhccCcccHHHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQDLSPRSSLH-KQIANAVNRGEVVSEDIIFGLLSKR 149 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l---~~~--~is~~dlir~~~~~~~~~g-~~i~~~l~~G~~ip~~~~~~ll~~~ 149 (268)
.++..|+|+|++||||||+++.|+..+ |.. +++.+++. ..+.....+. ......+ ..+.. +...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~-~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~ 92 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR-HGLNRDLSFKAEDRAENI--------RRVGE-VAKL 92 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT-TTTTTTCCSSHHHHHHHH--------HHHHH-HHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh-hHhhcccCcChHHHHHHH--------HHHHH-HHHH
Confidence 357789999999999999999999998 666 77775543 3222111110 0000000 00011 1122
Q ss_pred HHcCCccCccEEEEcCCcCCHHHHHHHHhhcC--CCeEEEEecCHHHHHhhhhHHHHHHH--HHHHHHchHHHHHHHhC-
Q 024390 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLAE--IDLVVNFKCADNFIVTNRGGSLKEKL--EAYAELSKPLEDYYQKQ- 224 (268)
Q Consensus 150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~--~d~vV~Ld~~~e~l~~Rl~~~~~~rl--~~y~~~~~~l~~~y~~~- 224 (268)
+.. .+..+|.++.-......+.+.+... .-++|||++|.+++.+|....+..+. ..+. ....+...|...
T Consensus 93 ~~~----~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~-~~~~~~~~~~~~~ 167 (200)
T 3uie_A 93 FAD----AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIK-GFTGIDDPYEPPL 167 (200)
T ss_dssp HHH----TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSC-SCBTTTBCCCCCS
T ss_pred HHh----CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCC-CCCCCCCcCcCCC
Confidence 222 2455666654333444455554432 23579999999999999843221111 0000 001112223321
Q ss_pred CcEEEEeCC--CCHHHHHHHHHHHHHhhc
Q 024390 225 KKLLEFQVG--SAPVETWQGLLTALHLQH 251 (268)
Q Consensus 225 ~~l~~Ida~--~s~eev~~~I~~~L~~~~ 251 (268)
.--+.||++ .+++++.++|.+.|....
T Consensus 168 ~~~~~idt~~~~~~~e~v~~i~~~l~~~~ 196 (200)
T 3uie_A 168 NCEISLGREGGTSPIEMAEKVVGYLDNKG 196 (200)
T ss_dssp SCSEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 123567765 599999999999998764
No 88
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.12 E-value=4.5e-10 Score=105.15 Aligned_cols=99 Identities=11% Similarity=-0.041 Sum_probs=72.1
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (268)
+..+..|+|+|+|||||||+|+.|++.+++.+|+.+++ + .. ......+...+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~-------~~----------------~~~~~~~~~~l~--- 307 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G-------SW----------------QRCVSSCQAALR--- 307 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C-------SH----------------HHHHHHHHHHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-H-------HH----------------HHHHHHHHHHHh---
Confidence 44667899999999999999999999999999999875 1 00 111223333343
Q ss_pred ccCccEEEEcCCcCCHHHHHHHHh----hcCCCeEEEEecCHHHHHhhhhHH
Q 024390 155 YRGEIGFILDGLPRSRIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGS 202 (268)
Q Consensus 155 ~~~~~g~IlDGfPr~~~qa~~l~~----~~~~d~vV~Ld~~~e~l~~Rl~~~ 202 (268)
.+..+|+|+...+..+...+.+ ......+|+|+++.+++++|+..+
T Consensus 308 --~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R 357 (416)
T 3zvl_A 308 --QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR 357 (416)
T ss_dssp --TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred --cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence 2567999998887766555433 234457999999999999998543
No 89
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.10 E-value=5.5e-10 Score=109.35 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=91.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---CCCccchh-HHHHhhcCCCChhHH-HHHHHHhccCcccHHHHHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQDLSPRSSLHK-QIANAVNRGEVVSEDIIFGLLSKRLE 151 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l---~~~~is~~-dlir~~~~~~~~~g~-~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (268)
+++.|+|+|+|||||||+|+.|++++ |+.++.++ +.+|..+.....+.. .-.+.+ .. +..++...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~-------r~-i~eva~~~l~ 122 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV-------RR-IAEVAKLFAD 122 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH-------HH-HHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH-------HH-HHHHHHHHHh
Confidence 67899999999999999999999999 98887774 677665432211110 000011 01 1122222222
Q ss_pred cCCccCccEEEEcC-CcCC--HHHHHHH-HhhcCCCeEEEEecCHHHHHhhhhHHHHH--HHHHHHHHchHHHHHHHhC-
Q 024390 152 DGYYRGEIGFILDG-LPRS--RIQAEIL-DQLAEIDLVVNFKCADNFIVTNRGGSLKE--KLEAYAELSKPLEDYYQKQ- 224 (268)
Q Consensus 152 ~~~~~~~~g~IlDG-fPr~--~~qa~~l-~~~~~~d~vV~Ld~~~e~l~~Rl~~~~~~--rl~~y~~~~~~l~~~y~~~- 224 (268)
.+.-+|.|+ .|.. ..+...+ .....++++|+|++|.+++.+|+....-+ |-.... ....+...|...
T Consensus 123 -----~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~-~~~~~~~~Ye~p~ 196 (630)
T 1x6v_B 123 -----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIK-GFTGIDSEYEKPE 196 (630)
T ss_dssp -----TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC-----CBTTTBCCCCCS
T ss_pred -----CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHH-HHHHhhhhhcccC
Confidence 233444452 2221 1222222 22234678999999999999998521111 100000 111122334311
Q ss_pred CcEEEEeCC-CCHHHHHHHHHHHHHhhccc
Q 024390 225 KKLLEFQVG-SAPVETWQGLLTALHLQHIN 253 (268)
Q Consensus 225 ~~l~~Ida~-~s~eev~~~I~~~L~~~~~~ 253 (268)
..-+.||++ .+++++.++|.+.|....+.
T Consensus 197 ~~dlvIDts~~s~eevv~~Il~~L~~~~~i 226 (630)
T 1x6v_B 197 APELVLKTDSCDVNDCVQQVVELLQERDIV 226 (630)
T ss_dssp SCSEEEETTSSCHHHHHHHHHHHHHHTTSS
T ss_pred CCcEEEECCCCCHHHHHHHHHHHHHhcCcc
Confidence 122678886 69999999999999876543
No 90
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.08 E-value=4.8e-10 Score=96.35 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=32.4
Q ss_pred cCCCeEEEEecCHHHHHhhhhHHH--HHHH--HHHHHHchHHH-HHH-----HhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 180 AEIDLVVNFKCADNFIVTNRGGSL--KEKL--EAYAELSKPLE-DYY-----QKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 180 ~~~d~vV~Ld~~~e~l~~Rl~~~~--~~rl--~~y~~~~~~l~-~~y-----~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
..||++|+|++|++++++|+.++- .++. ..|.+...... ++. .....+++||+++++++|+++|.+.+..
T Consensus 145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~ 224 (230)
T 2vp4_A 145 VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESS 224 (230)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC---------------
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 369999999999999999983220 0110 02322222211 111 2234688999999999999999998864
No 91
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.04 E-value=6.6e-10 Score=107.52 Aligned_cols=162 Identities=17% Similarity=0.093 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-----CccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~-----~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (268)
.++.|+|+|+|||||||+|+.|++.++. .+++. |.++..+.....+...-+... + +.+..++...+.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~~~~f~~~er~~~-----l--~~i~~~~~~~l~ 442 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSRGLGFSKEDRITN-----I--LRVGFVASEIVK 442 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCTTCCSSHHHHHHH-----H--HHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcccccccHHHHHHH-----H--HHHHHHHHHHHh
Confidence 4678999999999999999999998863 56665 556665432211111000000 0 011122222222
Q ss_pred cCCccCccEEEEcCCcCCHHHHHHHHhh-cCCC-eEEEEecCHHHHHhhhhHHH-H-HHHHHHHHHchHHHHHHHhCCcE
Q 024390 152 DGYYRGEIGFILDGLPRSRIQAEILDQL-AEID-LVVNFKCADNFIVTNRGGSL-K-EKLEAYAELSKPLEDYYQKQKKL 227 (268)
Q Consensus 152 ~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d-~vV~Ld~~~e~l~~Rl~~~~-~-~rl~~y~~~~~~l~~~y~~~~~l 227 (268)
.+.++|+|+........+.+.+. ..++ ++|+|++|.+++.+|+.... . .+.............|+......
T Consensus 443 -----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~ad 517 (546)
T 2gks_A 443 -----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPE 517 (546)
T ss_dssp -----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCS
T ss_pred -----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCc
Confidence 35689999744333333333333 2357 89999999999999984211 0 01111111110000111111123
Q ss_pred EEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390 228 LEFQVG-SAPVETWQGLLTALHLQH 251 (268)
Q Consensus 228 ~~Ida~-~s~eev~~~I~~~L~~~~ 251 (268)
++||++ .++++++++|.+.|...+
T Consensus 518 ivIDts~~s~eev~~~I~~~L~~~g 542 (546)
T 2gks_A 518 VRVDTTKLTPEESALKILEFLKKEG 542 (546)
T ss_dssp EEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 678885 799999999999997643
No 92
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.00 E-value=1.6e-09 Score=93.42 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=43.2
Q ss_pred CCCeEEEEecCHHHHHhhhhHHH--HHH--HHHHHHHchH-HHHHHH-----------hCCcEEEEeCCCCHHHHHHHHH
Q 024390 181 EIDLVVNFKCADNFIVTNRGGSL--KEK--LEAYAELSKP-LEDYYQ-----------KQKKLLEFQVGSAPVETWQGLL 244 (268)
Q Consensus 181 ~~d~vV~Ld~~~e~l~~Rl~~~~--~~r--l~~y~~~~~~-l~~~y~-----------~~~~l~~Ida~~s~eev~~~I~ 244 (268)
.||++|+|++|++++++|+.++- .++ -..|.+.... ...++. ....+++||++.+++++.+.+.
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~~i~ 228 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQE 228 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHHHHH
Confidence 79999999999999999973210 001 0122222222 122221 2457899999999988888777
Q ss_pred HHHH
Q 024390 245 TALH 248 (268)
Q Consensus 245 ~~L~ 248 (268)
.++.
T Consensus 229 ~i~~ 232 (241)
T 2ocp_A 229 DLMR 232 (241)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 93
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.88 E-value=6.7e-09 Score=100.96 Aligned_cols=159 Identities=11% Similarity=0.095 Sum_probs=85.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC----C--CccchhHHHHhhcCCCChhHHH-HHHHHhccCcccHHHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE----V--PRISMSSIVRQDLSPRSSLHKQ-IANAVNRGEVVSEDIIFGLLSKR 149 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~----~--~~is~~dlir~~~~~~~~~g~~-i~~~l~~G~~ip~~~~~~ll~~~ 149 (268)
+++.|+|+|+|||||||+|+.|+++++ . .+++. |.++..+......... ..+.+ ..+..++...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~~~~ 465 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRHTNI--------QRIAFVATEL 465 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHHHHH--------HHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHHHHH--------HHHHHHHHHH
Confidence 568899999999999999999999986 3 34554 5566554322111000 00000 0111223222
Q ss_pred HHcCCccCccEEEEcCCcCCHHHHHHHHhh-c--CCCeEEEEecCHHHHHhhhhHHHHHHH-----HHHHHHchHHHHHH
Q 024390 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQL-A--EIDLVVNFKCADNFIVTNRGGSLKEKL-----EAYAELSKPLEDYY 221 (268)
Q Consensus 150 l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~--~~d~vV~Ld~~~e~l~~Rl~~~~~~rl-----~~y~~~~~~l~~~y 221 (268)
+. .+..+|.|.+-......+.+.++ . ...++|||++|.+++.+|....+.++. +.+..... .|+
T Consensus 466 ~~-----~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~---~~~ 537 (573)
T 1m8p_A 466 TR-----AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDD---PYE 537 (573)
T ss_dssp HH-----TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTB---CCC
T ss_pred Hh-----CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccc---ccc
Confidence 22 24456666432112222222222 1 245899999999999999733211110 00000001 112
Q ss_pred HhCCcEEEEeCC-CCHHHHHHHHHHHHHhhcc
Q 024390 222 QKQKKLLEFQVG-SAPVETWQGLLTALHLQHI 252 (268)
Q Consensus 222 ~~~~~l~~Ida~-~s~eev~~~I~~~L~~~~~ 252 (268)
.....-+.||++ .+++++.++|.+.|...++
T Consensus 538 ~p~~~dl~IDts~~s~eevv~~Il~~l~~~~~ 569 (573)
T 1m8p_A 538 TPEKADLVVDFSKQSVRSIVHEIILVLESQGF 569 (573)
T ss_dssp CCSSCSEEECTTTSCHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 111223678876 5999999999999987654
No 94
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.86 E-value=1.3e-08 Score=84.88 Aligned_cols=159 Identities=8% Similarity=0.036 Sum_probs=70.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHhhcC---CCCh----hHHHHHHHHhccCcccHH--------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLS---PRSS----LHKQIANAVNRGEVVSED-------- 140 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l-~~~~is~~dlir~~~~---~~~~----~g~~i~~~l~~G~~ip~~-------- 140 (268)
.+..|+|+|++||||||+++.|+..+ ....+..+...+.... .+.. -.......+..|..+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG 84 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence 56789999999999999999999987 2112222222221100 0000 011223333333322100
Q ss_pred HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeE-EEEe-cCHHHHHhhhhHH-------HHHHHHHHH
Q 024390 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLV-VNFK-CADNFIVTNRGGS-------LKEKLEAYA 211 (268)
Q Consensus 141 ~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~v-V~Ld-~~~e~l~~Rl~~~-------~~~rl~~y~ 211 (268)
.....+...+. .+..+|+|+.+....+ +.+.. ++.+ |++. ++.+++.+|+..+ +.+|+..+.
T Consensus 85 ~~~~~i~~~l~-----~g~~vv~d~~~~~~~~---~~~~~-~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~ 155 (207)
T 2j41_A 85 TPVQYVKDTMD-----EGHDVFLEIEVEGAKQ---VRKKF-PDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEAR 155 (207)
T ss_dssp EEHHHHHHHHH-----TTCEEEEECCGGGHHH---HHHHC-TTSEEEEEECCC---------------------------
T ss_pred CCHHHHHHHHH-----cCCeEEEEECHHHHHH---HHHhc-CCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 00122333333 2467899986554333 23322 3533 3333 5577999998432 333443332
Q ss_pred HHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 212 ELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 212 ~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
.. ..++...+ ++ |+.+ ++++++++|.+.+....
T Consensus 156 ~~----~~~~~~~d-~v-I~n~-~~e~~~~~i~~~l~~~~ 188 (207)
T 2j41_A 156 KE----VEMMNLYD-YV-VVND-EVELAKNRIQCIVEAEH 188 (207)
T ss_dssp CG----GGGGGGCS-EE-EECS-SHHHHHHHHHHHHHHHH
T ss_pred HH----HhccccCC-EE-EECC-CHHHHHHHHHHHHHHhh
Confidence 22 12233333 44 4434 89999999999997653
No 95
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.85 E-value=1.6e-09 Score=104.21 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=66.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCc-----cchhHHHHhhcCCCChhHHHHHHHHhc-cC---cccHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR-----ISMSSIVRQDLSPRSSLHKQIANAVNR-GE---VVSEDIIFGLLS 147 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~-----is~~dlir~~~~~~~~~g~~i~~~l~~-G~---~ip~~~~~~ll~ 147 (268)
.+..|+|+|.|||||||+|+.|++.++..+ ++.|++.++....... .+++.. ++ ...+.+....+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~-----~~~f~~~~~~~~~~re~~~~~~l~ 108 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSS-----YNFFRPDNEEAMKVRKQCALAALR 108 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCC-----GGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCcc-----ccccCcccHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999986544 5778866554322110 011110 00 000112222222
Q ss_pred ---HHHHcCCccCccEEEEcCCcCCHHHHHHHHhh---cCC-CeEEEEecC-HHHHHhhh
Q 024390 148 ---KRLEDGYYRGEIGFILDGLPRSRIQAEILDQL---AEI-DLVVNFKCA-DNFIVTNR 199 (268)
Q Consensus 148 ---~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~---~~~-d~vV~Ld~~-~e~l~~Rl 199 (268)
..+.. ..+..+|+|+...+..+.+.+.+. ... -++|++.|+ ++++.+|+
T Consensus 109 ~~~~~L~~---~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri 165 (520)
T 2axn_A 109 DVKSYLAK---EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNI 165 (520)
T ss_dssp HHHHHHHH---SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHH
T ss_pred HHHHHHHh---cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHH
Confidence 22221 146789999988887766554332 122 346677777 56666666
No 96
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.81 E-value=1.1e-08 Score=85.18 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=83.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcC---CCC----hhHHHHHHHHhccCc------------c
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS---PRS----SLHKQIANAVNRGEV------------V 137 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~---~~~----~~g~~i~~~l~~G~~------------i 137 (268)
.+..++|+||+||||||+++.|+..+.-.+++..++-+.... .+. .-..........+.. .
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 467899999999999999999998864333332222111100 000 000111121111111 1
Q ss_pred cHHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhh-------HHHHHHHHHH
Q 024390 138 SEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-------GSLKEKLEAY 210 (268)
Q Consensus 138 p~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~-------~~~~~rl~~y 210 (268)
+.+ .+.+.+.. +..+|+|+.+....+.. .....+..++.+..+.+++.+|+. +.+++|+..+
T Consensus 86 ~~~----~i~~~l~~-----g~~vi~d~~~~~~~~~~--~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~ 154 (205)
T 3tr0_A 86 EKD----WVLRQLKA-----GRDVLLEIDWQGARQIR--ELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALA 154 (205)
T ss_dssp EHH----HHHHHHHT-----TCEEEEECCHHHHHHHH--HHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHH
T ss_pred hHH----HHHHHHHc-----CCeEEEEECHHHHHHHH--HhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 111 23333332 45788887644333222 222334444444557999999983 3466777665
Q ss_pred HHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 211 AELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 211 ~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
... .+++...+ .+.+| + +++++.++|.++|....
T Consensus 155 ~~~----~~~~~~~d-~vi~n-~-~~~~~~~~l~~~i~~~~ 188 (205)
T 3tr0_A 155 REE----MAHYKEFD-YLVVN-D-NFDQAVQNLIHIISAER 188 (205)
T ss_dssp HHH----HTTGGGCS-EEEEC-S-SHHHHHHHHHHHHHHHT
T ss_pred HHH----HhcccCCC-EEEEC-C-CHHHHHHHHHHHHHHHH
Confidence 433 23333333 33344 3 89999999999997643
No 97
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.75 E-value=1.2e-07 Score=80.06 Aligned_cols=160 Identities=11% Similarity=0.097 Sum_probs=84.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhcC---CCCh----hHHHHHHHHhccCcccHH--------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLS---PRSS----LHKQIANAVNRGEVVSED-------- 140 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~~---~~~~----~g~~i~~~l~~G~~ip~~-------- 140 (268)
++..|+|+||+||||||+++.|++.+.- ...+....-|.... .+.. -.....+.+..|..+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg 86 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG 86 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence 5678999999999999999999998753 22221111111000 0000 012222333333221000
Q ss_pred HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecC-HHHHHhhh-------hHHHHHHHHHHHH
Q 024390 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNR-------GGSLKEKLEAYAE 212 (268)
Q Consensus 141 ~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~-~e~l~~Rl-------~~~~~~rl~~y~~ 212 (268)
.....+.+.+. .+..+|+|..+.... .+.+......+|++..+ .+++.+|+ ++.+++|+.....
T Consensus 87 ~~~~~i~~~l~-----~g~~vild~~~~g~~---~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~ 158 (208)
T 3tau_A 87 TPLEYVEEKLA-----AGVDIFLEIEVQGAM---QVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKK 158 (208)
T ss_dssp EEHHHHHHHHH-----TTCCEEEECCHHHHH---HHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHH-----cCCeEEEEeeHHHHH---HHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 00122333343 356788887543322 23222222245666655 88999988 3456777766543
Q ss_pred HchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 213 LSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 213 ~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
.. .++...+ .+.+| .+.+++.++|.++|....
T Consensus 159 e~----~~~~~~d-~vivN--~~~~~~~~~l~~~i~~~~ 190 (208)
T 3tau_A 159 EI----EMMASYD-YAVVN--DVVANAVQKIKGIVETEH 190 (208)
T ss_dssp HH----HHGGGSS-EEEEC--SSHHHHHHHHHHHHHHHH
T ss_pred HH----HhhccCC-EEEEC--cCHHHHHHHHHHHHHHHH
Confidence 32 2233233 34444 369999999999997654
No 98
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.75 E-value=3.6e-08 Score=86.04 Aligned_cols=119 Identities=13% Similarity=0.187 Sum_probs=66.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHh-hcC--CCChhHHHHHH----HH-----hccCcccHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ-DLS--PRSSLHKQIAN----AV-----NRGEVVSEDIIFGLL 146 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~-~~~--~~~~~g~~i~~----~l-----~~G~~ip~~~~~~ll 146 (268)
+.|+|+|+|||||||+|+.|+++++..++++|++... ... ...+....... .+ ..| .+......+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~f~~~~ 80 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEG-ILDAESAHRRL 80 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGC-SCCHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccc-cccHHHHHHHH
Confidence 4789999999999999999999999999999886421 110 00000000000 00 000 12223333344
Q ss_pred HHHHHcCCccCccEEEEcCCcCCHHHHHHH-Hhh---cCCC-eEEEEecCH-HHHHhhhhHH
Q 024390 147 SKRLEDGYYRGEIGFILDGLPRSRIQAEIL-DQL---AEID-LVVNFKCAD-NFIVTNRGGS 202 (268)
Q Consensus 147 ~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l-~~~---~~~d-~vV~Ld~~~-e~l~~Rl~~~ 202 (268)
...+ +. ...+..+|++|-.. ...+.+ ... ...+ .+|+|++|. +++.+|+..+
T Consensus 81 ~~~i-~~-~~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R 138 (253)
T 2ze6_A 81 IFEV-DW-RKSEEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQR 138 (253)
T ss_dssp HHHH-HT-TTTSSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred HHHH-HH-HhCCCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHH
Confidence 4444 22 12456677765322 222222 220 1122 699999997 9999998543
No 99
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.66 E-value=2.2e-07 Score=76.60 Aligned_cols=112 Identities=11% Similarity=-0.017 Sum_probs=61.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (268)
+..++|+|++||||||+++.|++.++. .+++.+++.+.. ..+.-. . .....+...+.+.+....... ..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~-~-------~~~~~~~~~~~~~l~~~~~~~-~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRP-P-------WESDELLALTWKNITDLTVNF-LL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCC-G-------GGCHHHHHHHHHHHHHHHHHH-HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-cccccc-C-------ccchhHHHHHHHHHHHHHHHH-Hh
Confidence 457899999999999999999998765 788877665432 111000 0 000000111111111111110 01
Q ss_pred CccEEEEcCCcCCHHHHHHHHhh----c-C-CCeEEEEecCHHHHHhhhh
Q 024390 157 GEIGFILDGLPRSRIQAEILDQL----A-E-IDLVVNFKCADNFIVTNRG 200 (268)
Q Consensus 157 ~~~g~IlDGfPr~~~qa~~l~~~----~-~-~d~vV~Ld~~~e~l~~Rl~ 200 (268)
.+..+|+|++- .....+.+.+. . . ...+++|+++.+++.+|..
T Consensus 72 ~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~ 120 (189)
T 2bdt_A 72 AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA 120 (189)
T ss_dssp TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTT
T ss_pred cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHH
Confidence 23468899852 33322322222 1 1 2346889999999999984
No 100
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.60 E-value=1.3e-08 Score=83.84 Aligned_cols=161 Identities=15% Similarity=0.078 Sum_probs=84.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (268)
.+..|+|+|+|||||||+++.|+..++.. +++.+++.... ..+...+ ++.+.. .+...+.+.+.......
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~-----~~~~~~-~~~~~v~~~l~~~~~~~- 79 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDP-----WLPQSH-QQNRMIMQIAADVAGRY- 79 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCT-----TSSSHH-HHHHHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccC-----Cccchh-hhhHHHHHHHHHHHHHH-
Confidence 56789999999999999999999987554 77777765432 1110000 000000 00111111221111100
Q ss_pred ccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecCHHHHHhhhhHH----H--HHHHHHHHHHchHHHHHHHhCCcEE
Q 024390 155 YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----L--KEKLEAYAELSKPLEDYYQKQKKLL 228 (268)
Q Consensus 155 ~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~~e~l~~Rl~~~----~--~~rl~~y~~~~~~l~~~y~~~~~l~ 228 (268)
...+..+++|++.... +.+.+......-.++++.++.++++.|+..+ + ........+...++ +. .+. +
T Consensus 80 ~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l---~~-~~~-~ 153 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADL---GA-FEH-H 153 (191)
T ss_dssp HHTSCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCC---GG-GGG-G
T ss_pred hccCCeEEEeccCcHH-HHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhcc---Cc-ccc-c
Confidence 0124457888865431 2222332222335899999999999998211 0 11122222222222 21 112 2
Q ss_pred EEeCC-CCHHHHHHHHHHHHHhhc
Q 024390 229 EFQVG-SAPVETWQGLLTALHLQH 251 (268)
Q Consensus 229 ~Ida~-~s~eev~~~I~~~L~~~~ 251 (268)
.|+++ .++++++++|.+.+....
T Consensus 154 ~i~t~~~~~~~~~~~i~~~l~~~~ 177 (191)
T 1zp6_A 154 VLPVSGKDTDQALQSAINALQSGR 177 (191)
T ss_dssp EEECTTCCTTTTTTTTHHHHHHTT
T ss_pred EEECCCCCHHHHHHHHHHHHHhhh
Confidence 45554 689999999999987543
No 101
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.57 E-value=9e-08 Score=87.05 Aligned_cols=30 Identities=10% Similarity=-0.092 Sum_probs=27.2
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
+.+++.|+|.|+.||||||+++.|++.++.
T Consensus 4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999999999865
No 102
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.53 E-value=2.4e-07 Score=89.59 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=70.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC------CCccchhHHHHhhcCCCChhHH-HHHHHHhccCcccHHHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQDLSPRSSLHK-QIANAVNRGEVVSEDIIFGLLSKR 149 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~------~~~is~~dlir~~~~~~~~~g~-~i~~~l~~G~~ip~~~~~~ll~~~ 149 (268)
++..|+|+|++||||||+++.|+..++ +.+++.+++... +.....+.. ...... .. ...+.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~~~--------r~-i~~v~q~ 437 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDVNV--------RR-IGFVASE 437 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHHHH--------HH-HHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHHHH--------HH-HHHHHHH
Confidence 678899999999999999999999985 334666555432 211100000 000000 00 1112122
Q ss_pred HHcCCccCccEEEEcC-CcCCHHHHHHHHhhcCCC--eEEEEecCHHHHHhhhhHHH-H-HHHHHHHHHchHHHHHHHhC
Q 024390 150 LEDGYYRGEIGFILDG-LPRSRIQAEILDQLAEID--LVVNFKCADNFIVTNRGGSL-K-EKLEAYAELSKPLEDYYQKQ 224 (268)
Q Consensus 150 l~~~~~~~~~g~IlDG-fPr~~~qa~~l~~~~~~d--~vV~Ld~~~e~l~~Rl~~~~-~-~rl~~y~~~~~~l~~~y~~~ 224 (268)
+.. .+..++..+ .|.........+.+...+ ++|+|++|.|++.+|..... . .+.....+.......||...
T Consensus 438 l~~----~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~ 513 (552)
T 3cr8_A 438 ITK----NRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPE 513 (552)
T ss_dssp HHH----TTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCS
T ss_pred HHh----cCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCC
Confidence 221 233444444 332221111111112233 79999999999999973211 0 01001111111011223211
Q ss_pred CcEEEEeCC-CCHHHHHHHHHHHHHhhc
Q 024390 225 KKLLEFQVG-SAPVETWQGLLTALHLQH 251 (268)
Q Consensus 225 ~~l~~Ida~-~s~eev~~~I~~~L~~~~ 251 (268)
.--+.||++ .+++++.++|.+.|....
T Consensus 514 ~adl~Idt~~~s~~e~v~~Il~~L~~~~ 541 (552)
T 3cr8_A 514 TPELAIDTTGLAIDEAVQQILLKLEHEG 541 (552)
T ss_dssp SCSEEECCSSCCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 112567765 789999999999997654
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.50 E-value=1.3e-06 Score=73.04 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVR 114 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~--~~~is~~dlir 114 (268)
.+.+|.|.|++||||||+++.|+..++ +.+++.+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 567899999999999999999999998 88888776554
No 104
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.48 E-value=2.2e-06 Score=70.38 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=78.0
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHhCC-C--ccchhHH-HHhhcCCCCh----hHHHHHHHHhccCcccHH------
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV-P--RISMSSI-VRQDLSPRSS----LHKQIANAVNRGEVVSED------ 140 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l~~-~--~is~~dl-ir~~~~~~~~----~g~~i~~~l~~G~~ip~~------ 140 (268)
|.++..++|+||+||||||+++.|+..+.- . .++...- .+.....+.. -...+...+..+..+...
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~ 81 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAM 81 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcc
Confidence 456778999999999999999999987631 0 1110000 0000000000 011222333333222100
Q ss_pred --HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecC-HHHHHhhhhHHHHHHHHHHHHHchHH
Q 024390 141 --IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNRGGSLKEKLEAYAELSKPL 217 (268)
Q Consensus 141 --~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~-~e~l~~Rl~~~~~~rl~~y~~~~~~l 217 (268)
.....+.+.+. .+..+|+|.-+.... .+.+......+||+..| .+.+.+| ++.+ +|+.. ...++
T Consensus 82 yg~~~~~i~~~l~-----~g~~vil~id~~g~~---~~~~~~~~~~~ifi~~p~~~~l~~R-~~~i-~r~~~---~~~~~ 148 (180)
T 1kgd_A 82 YGTKLETIRKIHE-----QGLIAILDVEPQALK---VLRTAEFAPFVVFIAAPTITPGLNE-DESL-QRLQK---ESDIL 148 (180)
T ss_dssp EEEEHHHHHHHHH-----TTCEEEEECCGGGHH---HHSSTTTCEEEEEEECCSCCTTSCC-SHHH-HHHHH---HHHHH
T ss_pred ccccHHHHHHHHH-----CCCeEEEEECHHHHH---HHHHhCCCcEEEEEECCCHHHHHhh-HHHH-HHHHH---HHHHH
Confidence 00112233333 256678875443322 23222222478899876 6666666 5555 44422 22233
Q ss_pred HHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 218 EDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 218 ~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
...|...-..+.+| + +.++..+++.++|..
T Consensus 149 ~~~~~~~~d~~i~n-~-~~~~~~~~l~~~i~~ 178 (180)
T 1kgd_A 149 QRTYAHYFDLTIIN-N-EIDETIRHLEEAVEL 178 (180)
T ss_dssp HHHHGGGCSEEEEC-S-SHHHHHHHHHHHHHH
T ss_pred HHhhhCCCcEEEEC-c-CHHHHHHHHHHHHHH
Confidence 22233222233333 3 799999999998864
No 105
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.40 E-value=4.2e-07 Score=82.65 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl 112 (268)
+++.|+|+||+||||||++..||++++..+||+|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 446899999999999999999999999999998875
No 106
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.39 E-value=1.1e-06 Score=73.34 Aligned_cols=156 Identities=10% Similarity=0.010 Sum_probs=85.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhc---CCCCh----hHHHHHHHHhccCcccHH--------HHHH
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDL---SPRSS----LHKQIANAVNRGEVVSED--------IIFG 144 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~---~~~~~----~g~~i~~~l~~G~~ip~~--------~~~~ 144 (268)
|+|+||+||||+|+++.|.+.+.- ..+++.-.-|..- ..+.. ..+...+.+.+|+.+... ....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~ 83 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA 83 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecc
Confidence 899999999999999999887632 2222211111110 01111 134455566666543210 0122
Q ss_pred HHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhc--CCCeEEEEecCHHHHHhhh-------hHHHHHHHHHHHHHch
Q 024390 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNR-------GGSLKEKLEAYAELSK 215 (268)
Q Consensus 145 ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~--~~d~vV~Ld~~~e~l~~Rl-------~~~~~~rl~~y~~~~~ 215 (268)
-+.+.+.+ +..+|+|.-+.. +..+.+.. .+..++.+--+.+++.+|+ ++.+++|+........
T Consensus 84 ~v~~~l~~-----g~~vil~id~~g---~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~ 155 (186)
T 1ex7_A 84 SVKQVSKS-----GKTCILDIDMQG---VKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELA 155 (186)
T ss_dssp HHHHHHHH-----TSEEEEECCHHH---HHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred eeeehhhC-----CCEEEecCCHHH---HHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 23334443 567888865332 33344432 3344555566678999998 4567888876654432
Q ss_pred HHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 216 PLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 216 ~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
... ....+ .+.+| .+.++.+++|.++|..
T Consensus 156 ~~~--~~~fD-~vIvN--ddle~a~~~l~~iI~a 184 (186)
T 1ex7_A 156 YAE--TGAHD-KVIVN--DDLDKAYKELKDFIFA 184 (186)
T ss_dssp HHT--TTCSS-EEEEC--SSHHHHHHHHHHHHTT
T ss_pred hcc--ccCCc-EEEEC--cCHHHHHHHHHHHHHh
Confidence 110 00112 33443 5799999999998853
No 107
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.38 E-value=1.1e-06 Score=74.34 Aligned_cols=156 Identities=8% Similarity=0.058 Sum_probs=89.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHHHhhcC--CCChh-------------HHHHHHH----HhccC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQDLS--PRSSL-------------HKQIANA----VNRGE 135 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~---~~~is~~dlir~~~~--~~~~~-------------g~~i~~~----l~~G~ 135 (268)
.++|+|.|.|||||+|+|+.|.+.+| +..++++|.++++.. .+-++ ++.+... ...|.
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~ 90 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 90 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCT
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCc
Confidence 46899999999999999999999885 678999999986321 11000 0011100 00010
Q ss_pred cccHHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCC-CeEEEEecCHHHHHhhhhHHHHHHHHHHHHHc
Q 024390 136 VVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEI-DLVVNFKCADNFIVTNRGGSLKEKLEAYAELS 214 (268)
Q Consensus 136 ~ip~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~-d~vV~Ld~~~e~l~~Rl~~~~~~rl~~y~~~~ 214 (268)
.+ ..+..... .....|||||. |....++.|.+..+. -.+|.+.+++++..+|.......+- .....
T Consensus 91 ~~--------~~~~~~~~--~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~D-d~esE- 157 (202)
T 3ch4_B 91 GF--------FCRKIVEG--ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVD-DAESE- 157 (202)
T ss_dssp TT--------THHHHSBT--CCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTT-TSHHH-
T ss_pred hH--------HHHHHHHh--cCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhcccccc-ccccc-
Confidence 00 01111111 13457999997 777888888875332 3479999999999999611000000 00000
Q ss_pred hHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 215 KPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 215 ~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
-.+-+ + ...-++ |+.+.+.+|+.++|..++..
T Consensus 158 ~gL~~-~-~~~D~v-I~Ndgt~eel~~~v~~ll~~ 189 (202)
T 3ch4_B 158 CGLDN-F-GDFDWV-IENHGVEQRLEEQLENLIEF 189 (202)
T ss_dssp HTTTT-C-CCCSEE-EEECSCHHHHHHHHHHHHHH
T ss_pred cCCCC-C-CcCCEE-EEeCCCHHHHHHHHHHHHHH
Confidence 01111 1 122344 44477999999988887754
No 108
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.38 E-value=2.5e-06 Score=76.39 Aligned_cols=165 Identities=8% Similarity=0.027 Sum_probs=90.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
..++.|+|.|..||||+|+++.|.+.++-..+.+ ..-..+.+..+. .. ++ .+....-.
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V-------~~~~~Pt~eE~~------~~--------yl-~R~~~~LP 141 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARV-------VALTKPTETERG------QW--------YF-QRYVATFP 141 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEE-------EECCSCCHHHHT------SC--------TT-HHHHTTCC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeE-------EEeCCcChHHHh------ch--------HH-HHHHHhcc
Confidence 3578999999999999999999999986443221 000111122221 11 11 22222211
Q ss_pred cCccEEEEcCCcCC------------H-------HHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHHH--------
Q 024390 156 RGEIGFILDGLPRS------------R-------IQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLK-------- 204 (268)
Q Consensus 156 ~~~~g~IlDGfPr~------------~-------~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~~-------- 204 (268)
..+.-+|+|.+..+ . .+...|++. +.+++.|||+++.++-.+|+.++..
T Consensus 142 ~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~ 221 (304)
T 3czq_A 142 TAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKL 221 (304)
T ss_dssp CTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGC
T ss_pred cCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccccCC
Confidence 23455677754321 1 122333322 3688999999999999999843321
Q ss_pred --------HHHHHHHHHchHHHHHHH-hCCcEEEEeCCCCH---HHHHHHHHHHHHhhccc----ccCChHHHh
Q 024390 205 --------EKLEAYAELSKPLEDYYQ-KQKKLLEFQVGSAP---VETWQGLLTALHLQHIN----AAYSSQELM 262 (268)
Q Consensus 205 --------~rl~~y~~~~~~l~~~y~-~~~~l~~Ida~~s~---eev~~~I~~~L~~~~~~----~~~~~~~~~ 262 (268)
++++.|.+....+...-+ ....+++|+++... -.+.+.|.+.|.....+ ..++++++.
T Consensus 222 s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~~~~~~~~~~~~~~~~~~ 295 (304)
T 3czq_A 222 SPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYDGKDEAAIGEVDEKILG 295 (304)
T ss_dssp CHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCCTTCCHHHHCCCCTTTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhhccCCccccCCCCccccc
Confidence 222334433333332211 12369999998754 55666666666544322 245554443
No 109
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.37 E-value=8.1e-06 Score=70.29 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
..+.+|.|.|+.||||||+++.|+..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 467789999999999999999999998865
No 110
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.36 E-value=1.2e-06 Score=82.91 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=61.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC-----ccchhHHHHhhcCCCChhHHHHHHHHhc-cCc---ccHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP-----RISMSSIVRQDLSPRSSLHKQIANAVNR-GEV---VSEDIIFGLL 146 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~-----~is~~dlir~~~~~~~~~g~~i~~~l~~-G~~---ip~~~~~~ll 146 (268)
.++.+|+|+|.|||||||+++.|++.++.. .++.+++.++........ +++.. |+. .-+......+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-----~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-----EFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-----cccCCCCHHHHHHHHHHHHHHH
Confidence 356789999999999999999999987643 444555444422110000 00110 100 0011111222
Q ss_pred ---HHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh-cC-CCeEEEEe---cCHHHHHhhh
Q 024390 147 ---SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AE-IDLVVNFK---CADNFIVTNR 199 (268)
Q Consensus 147 ---~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~~-~d~vV~Ld---~~~e~l~~Rl 199 (268)
...+.. ..+.++|+|+.-.+..+.+.+.+. .. ...+++|+ .+++.+.+|+
T Consensus 112 ~~~~~~l~~---~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~ 169 (469)
T 1bif_A 112 NDVRKFLSE---EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANI 169 (469)
T ss_dssp HHHHHHHHT---TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHh---CCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHH
Confidence 223322 246689999987777665554322 11 12356666 4466776665
No 111
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.34 E-value=3.6e-06 Score=69.39 Aligned_cols=158 Identities=9% Similarity=-0.033 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC----CCccchhHHHHhhcCCCCh----hHHHHHHHHhccCcccH--------HHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSIVRQDLSPRSS----LHKQIANAVNRGEVVSE--------DII 142 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~----~~~is~~dlir~~~~~~~~----~g~~i~~~l~~G~~ip~--------~~~ 142 (268)
..++|+||+||||||+++.|+..+. .....+..--+.-...+.. ...........+..+.. ..-
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~~ 81 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccCc
Confidence 4589999999999999999998653 1111110000000000000 01222222222221110 000
Q ss_pred HHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHh-hcCCCeEEEEecCH-HHHHhhhh-------HHHHHHHHHHHHH
Q 024390 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCAD-NFIVTNRG-------GSLKEKLEAYAEL 213 (268)
Q Consensus 143 ~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~-~~~~d~vV~Ld~~~-e~l~~Rl~-------~~~~~rl~~y~~~ 213 (268)
...+.+.+.. +..+|+|.-+ .-+..+.. ...-..+|++..|. +++.+|+. +.+++|+......
T Consensus 82 ~~~i~~~l~~-----g~~~il~~~~---~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~ 153 (186)
T 3a00_A 82 VASVKQVSKS-----GKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAE 153 (186)
T ss_dssp HHHHHHHHHT-----TCEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCC----------------------------
T ss_pred HHHHHHHHHc-----CCeEEEEEcH---HHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 1223333332 4567887432 22334444 22234578888866 89999983 3455566544332
Q ss_pred chHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHh
Q 024390 214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 249 (268)
Q Consensus 214 ~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~ 249 (268)
+...+......+.+| + +.++..++|.++|..
T Consensus 154 ---~~~~~~~~~d~vi~n-d-~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 154 ---LAYAETGAHDKVIVN-D-DLDKAYKELKDFIFA 184 (186)
T ss_dssp --------CCCCSEEEEC-S-SHHHHHHHHHHHHTT
T ss_pred ---HHhhcccCCcEEEEC-c-CHHHHHHHHHHHHHh
Confidence 211111111234444 3 899999999998864
No 112
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.28 E-value=1.4e-06 Score=72.95 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++.+|.|+|++||||||+++.|+..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999876
No 113
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.23 E-value=1.6e-06 Score=78.97 Aligned_cols=29 Identities=17% Similarity=0.038 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCChhHHH-HHHHHHhCC
Q 024390 76 RRGVHWAFIGSPRAKKHVYA-EMLSKLLEV 104 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a-~~La~~l~~ 104 (268)
.+++.|+|.|+.||||||++ +.|++.++-
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 46789999999999999999 999998864
No 114
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.21 E-value=9.8e-06 Score=68.92 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=18.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH-HHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLS-KLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La-~~l 102 (268)
..+..++|+||+||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356789999999999999999999 765
No 115
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.18 E-value=1.8e-06 Score=78.44 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.+++.|+|.|+.||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3678999999999999999999999875
No 116
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.11 E-value=1.7e-05 Score=72.97 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.+++.|+|.|+.||||||+++.|++.++
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5788999999999999999999999875
No 117
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.97 E-value=2.5e-06 Score=77.13 Aligned_cols=37 Identities=24% Similarity=0.166 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dli 113 (268)
.++.|+|+||+||||||+++.|+++++..+||+|++.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 3458999999999999999999999999999997653
No 118
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.89 E-value=0.00011 Score=61.79 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.++..|+|+||+||||||+++.|.+.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4667899999999999999999998875
No 119
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.83 E-value=1e-05 Score=73.15 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSI 112 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dl 112 (268)
.++.+|.|+|++||||||+++.|+..++ +..+++++.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4667899999999999999999999875 334666654
No 120
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.80 E-value=3.9e-06 Score=74.61 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dlir 114 (268)
++++|.|.|++||||||+|+.|++.+| +.+|++|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 456899999999999999999999887 78899998875
No 121
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.76 E-value=0.00019 Score=68.48 Aligned_cols=166 Identities=13% Similarity=0.082 Sum_probs=79.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCc---cchhHHHHhhcCCCChhHHHHHHHHhccCcc--cHHHHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR---ISMSSIVRQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLLSKRL 150 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~---is~~dlir~~~~~~~~~g~~i~~~l~~G~~i--p~~~~~~ll~~~l 150 (268)
..++.|+|.|.+||||+++++.|.+.++-.. +.+..=-.++. ...-+.......-..|+.+ .......++..++
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~-~~~yl~R~~~~lP~~G~IvIfdRSwYs~~~v~rv 119 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEEL-ERPPQWRFWRRLPPKGRTGIFFGNWYSQMLYARV 119 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHH-TSCTTHHHHHHCCCTTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhc-cCChhhhHHHhCCCCCeEEEEeCchhhHHHHHHH
Confidence 4779999999999999999999999985432 22210000000 0001111111111122211 1111112222221
Q ss_pred HcCCccCccEEEEcCCcCCHHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHHH----------------HHHHHH
Q 024390 151 EDGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLK----------------EKLEAY 210 (268)
Q Consensus 151 ~~~~~~~~~g~IlDGfPr~~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~~----------------~rl~~y 210 (268)
... |. . +-+-....+...|++. +.+++.+||++|.++..+|+.++.. ++++.|
T Consensus 120 ~g~-~~--~----~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~~~~Y 192 (500)
T 3czp_A 120 EGH-IK--E----AKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWKQSEVYDRF 192 (500)
T ss_dssp TTS-SC--H----HHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------------CSSCTTSHHHHHHH
T ss_pred hcC-CC--H----HHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHH
Confidence 110 00 0 0000011233334332 4678999999999999999944321 334445
Q ss_pred HHHchHHHHHHHh-CCcEEEEeCCC---CHHHHHHHHHHHHHh
Q 024390 211 AELSKPLEDYYQK-QKKLLEFQVGS---APVETWQGLLTALHL 249 (268)
Q Consensus 211 ~~~~~~l~~~y~~-~~~l~~Ida~~---s~eev~~~I~~~L~~ 249 (268)
.+........-+. ...+++|+++. ....+.+.|.+.|..
T Consensus 193 ~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~ 235 (500)
T 3czp_A 193 VHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQA 235 (500)
T ss_dssp HHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHH
Confidence 4443333322111 12589999876 345566666666653
No 122
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.73 E-value=1.9e-05 Score=68.52 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~ 117 (268)
++|.|.|++||||||+++.|++.+|++++++++.+++++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~ 40 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL 40 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHH
Confidence 579999999999999999999999999999998887764
No 123
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.72 E-value=1.1e-05 Score=73.43 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl 112 (268)
+.|+|+||+||||||+|..|++.++..+||+|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 5799999999999999999999999989998876
No 124
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.71 E-value=0.00025 Score=67.69 Aligned_cols=149 Identities=11% Similarity=0.043 Sum_probs=85.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC---ccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP---RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~---~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~ 152 (268)
..++.|+|.|..||||+++.+.|.+.++-. ++.+. .|..... +.. .+. +...
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~~--------yl~-R~~~ 352 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQP--------YLW-RFWR 352 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TSC--------TTH-HHHT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cch--------HHH-HHHH
Confidence 478899999999999999999999988533 33221 1111111 111 111 2222
Q ss_pred CCccCccEEEEcCCcCC------------H-------HHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHHHH-----
Q 024390 153 GYYRGEIGFILDGLPRS------------R-------IQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLK----- 204 (268)
Q Consensus 153 ~~~~~~~g~IlDGfPr~------------~-------~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~~~----- 204 (268)
+....+.-+|+|.+..+ . .+...|++. +.+++.+||++|.++-.+|+.++..
T Consensus 353 ~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~ 432 (500)
T 3czp_A 353 HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKR 432 (500)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTT
T ss_pred hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence 22223445677754322 1 122333322 4578999999999999999954322
Q ss_pred -----------HHHHHHHHHchHHHHHHHhC-CcEEEEeCCC---CHHHHHHHHHHHHHh
Q 024390 205 -----------EKLEAYAELSKPLEDYYQKQ-KKLLEFQVGS---APVETWQGLLTALHL 249 (268)
Q Consensus 205 -----------~rl~~y~~~~~~l~~~y~~~-~~l~~Ida~~---s~eev~~~I~~~L~~ 249 (268)
++.+.|.+........-+.. ..+++|+++. ..-.|.+.|.+.|..
T Consensus 433 Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~ 492 (500)
T 3czp_A 433 YKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEA 492 (500)
T ss_dssp SCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHH
Confidence 33445555444443322222 3589999876 345566666666654
No 125
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.63 E-value=2.2e-05 Score=70.62 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d 111 (268)
.++.|+|+||+||||||++..|+++++..+||.|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 45689999999999999999999999988888765
No 126
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.62 E-value=1.7e-05 Score=72.57 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~ 106 (268)
..+.|+|+|+|||||||+++.|++.+++.+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345799999999999999999999999877
No 127
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.62 E-value=2.2e-05 Score=70.66 Aligned_cols=35 Identities=29% Similarity=0.201 Sum_probs=31.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dl 112 (268)
++.|+|.||+||||||++..|++.++..+||.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 46799999999999999999999999888888765
No 128
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.58 E-value=2.9e-05 Score=74.35 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
..++.|+|+|.+||||||+|+.|+++++.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 36689999999999999999999999986
No 129
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.54 E-value=5e-05 Score=67.27 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVR 114 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir 114 (268)
.+..++|.||||+|||++|+.||+.+|.+++ +.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~ 74 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES 74 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh
Confidence 3456888899999999999999999987654 5555543
No 130
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.46 E-value=5.3e-05 Score=63.41 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSS 111 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~d 111 (268)
..+.+|.|+|++||||||+++.|+..+. ..+|+.++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 4678999999999999999999999875 44555543
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.41 E-value=0.00013 Score=59.32 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh----C--CCccchhHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMSSIVRQ 115 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l----~--~~~is~~dlir~ 115 (268)
.+..++|.||||+||||+++.++..+ | +.+++..+++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 46679999999999999999998876 3 345566555543
No 132
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.40 E-value=0.0012 Score=53.38 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=54.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHH----HHHHHHHHHHHc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED----IIFGLLSKRLED 152 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~----~~~~ll~~~l~~ 152 (268)
.+-.+.|+|++||||||+++.+.. +...++. +.++..+.+.. |...... .........+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~- 71 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLMSDDE------------NDQTVTGAAFDVLHYIVSKRLQ- 71 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHHCSST------------TCGGGHHHHHHHHHHHHHHHHH-
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHhcCcc------------cchhhHHHHHHHHHHHHHHHHh-
Confidence 677899999999999999998652 3444444 34444332211 1111111 11111222222
Q ss_pred CCccCccEEEEcCCcCCHH-HHH--HHHh-hcCCCeEEEEecCHHHHHhhh
Q 024390 153 GYYRGEIGFILDGLPRSRI-QAE--ILDQ-LAEIDLVVNFKCADNFIVTNR 199 (268)
Q Consensus 153 ~~~~~~~g~IlDGfPr~~~-qa~--~l~~-~~~~d~vV~Ld~~~e~l~~Rl 199 (268)
.+...++|....... |.+ .+-. +...-.+++||.|...+-.|.
T Consensus 72 ----~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~ 118 (171)
T 4gp7_A 72 ----LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERN 118 (171)
T ss_dssp ----TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred ----CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHH
Confidence 234456666443322 222 2222 222234899999999888774
No 133
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=7.7e-05 Score=69.89 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=26.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
-|++.||||+|||++|+.+|..+|.+++.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 499999999999999999999999876554
No 134
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=9.3e-05 Score=69.49 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV 113 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dli 113 (268)
.-|++.||||+|||++|+.||..+|.+++.+ ++++
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 3499999999999999999999999876544 4444
No 135
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0001 Score=68.47 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=28.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV 113 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dli 113 (268)
-|++.||||+|||.+|+.+|...+.+++++ .+++
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 389999999999999999999999876554 4444
No 136
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=8.9e-05 Score=69.55 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV 113 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dli 113 (268)
.-|++.||||+|||++|+.+|...|.+++.+ .+++
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 4599999999999999999999999876544 4444
No 137
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.31 E-value=8.2e-05 Score=69.13 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d 111 (268)
+.|+|.||+||||||++..|++.++..+||+|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 478999999999999999999999988888875
No 138
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.29 E-value=0.00016 Score=61.95 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+.-++|.|+||+|||++++.+++.++.+++.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 34589999999999999999999998776543
No 139
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.28 E-value=0.00017 Score=62.03 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=26.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
-++|.|+||+||||+++.|+..++.+.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 499999999999999999999998765543
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.25 E-value=0.00027 Score=56.31 Aligned_cols=25 Identities=16% Similarity=0.027 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..++|.|++|+||||+++.++..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999876
No 141
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.25 E-value=0.00016 Score=64.40 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSI 112 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-------~~~is~~dl 112 (268)
.++.+|.|+|++||||||+++.|+..++ +..|++++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4678899999999999999999999876 445566653
No 142
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.23 E-value=0.00019 Score=65.17 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+..|+|.||||+|||++|+.|++.++.+++.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 34599999999999999999999998877654
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.20 E-value=0.00018 Score=63.16 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is 108 (268)
++|+||||+||||+++.|+..++...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999998765443
No 144
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0002 Score=66.95 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV 113 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dli 113 (268)
.-|++.||||+|||.+|+.+|...+.+++.+ .+++
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred CCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 3499999999999999999999999876554 3444
No 145
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.17 E-value=0.00021 Score=67.15 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~ 110 (268)
+..|+|+||||+||||+|+.||+.++.+++.++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 345999999999999999999999999887664
No 146
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.17 E-value=0.00019 Score=63.52 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHhh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQD 116 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir~~ 116 (268)
+..|+|.||||+|||++|+.|++.++..++ +..+++...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 345999999999999999999999987654 444665443
No 147
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.17 E-value=0.00021 Score=62.16 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+..++|.||||+|||++++.+++.++.+++.+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34599999999999999999999998765443
No 148
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00018 Score=67.91 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV 113 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dli 113 (268)
.-|++.||||+|||++|+.+|...+.+++.+ .+++
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 3489999999999999999999999876544 4444
No 149
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.16 E-value=0.00027 Score=61.31 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
.+..++|.|+||+|||++|+.+++..+.+++.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 345699999999999999999999998876544
No 150
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.15 E-value=0.00023 Score=58.56 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
+++.|+|++||||||+.+.|+..++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999999886
No 151
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.15 E-value=0.00021 Score=62.65 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is 108 (268)
+..++|.||||+|||++++.+++.++.+++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 4469999999999999999999999865543
No 152
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.12 E-value=0.00027 Score=62.15 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..++|.|+||+|||++|+.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999987
No 153
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.09 E-value=0.00025 Score=59.83 Aligned_cols=35 Identities=17% Similarity=-0.004 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d 111 (268)
..+..|+|+|++||||||+|..|+++.+ ..|+.|.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 3567899999999999999999999877 7777654
No 154
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.06 E-value=0.00032 Score=61.35 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
+..++|.|+||+|||++++.+++.++.+++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 345899999999999999999999987654
No 155
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.06 E-value=0.00037 Score=59.74 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
++|+||||+||||+++.|+...+...+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 99999999999999999999887655443
No 156
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.03 E-value=0.00035 Score=63.60 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+..++|.|+||+|||++|+.|++.++.+++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 34599999999999999999999998766544
No 157
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.01 E-value=0.00036 Score=62.29 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVR 114 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir 114 (268)
+..++|.||||+|||++|+.+++..+.+++ +..+++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 346999999999999999999999987654 4445543
No 158
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.01 E-value=0.00048 Score=61.10 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCcc-chhHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRI-SMSSIV 113 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~-------~~~i-s~~dli 113 (268)
.++.+|.|.|++||||||+++.|++.++ ...+ +.++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 4678899999999999999999999875 3345 776654
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.00 E-value=0.00049 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..++|.|+||+|||++++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999986
No 160
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.98 E-value=0.0002 Score=61.76 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
++|.|+||+|||++|+.|++.++.+++.+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 88999999999999999999998765544
No 161
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=96.98 E-value=0.0079 Score=53.15 Aligned_cols=156 Identities=9% Similarity=0.006 Sum_probs=86.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCc
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (268)
..++.|+|.|..||||+++.+.|.+.++-..+.+-. +...+ .. +..-..+ .|....-.
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a-----~~~Pt--~e--------------E~~~~yl-wR~~~~lP 130 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTA-----FKAPT--DE--------------EKSHDFL-WRIEKQVP 130 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEE-----CCSCC--HH--------------HHTSCTT-HHHHTTCC
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEE-----CCCCC--hh--------------hhcCCHH-HHHHHhCC
Confidence 367899999999999999999999998643332210 01000 00 0000011 11222211
Q ss_pred cCccEEEEcCCcCC-------------------HHHHHHHHhh----cCCCeEEEEecCHHHHHhhhhHH----------
Q 024390 156 RGEIGFILDGLPRS-------------------RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS---------- 202 (268)
Q Consensus 156 ~~~~g~IlDGfPr~-------------------~~qa~~l~~~----~~~d~vV~Ld~~~e~l~~Rl~~~---------- 202 (268)
..+.-.|+|+...+ ..+...|++. +..-+-+||+++.++-.+|+.++
T Consensus 131 ~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK~ 210 (289)
T 3rhf_A 131 AAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWKY 210 (289)
T ss_dssp CTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGGC
T ss_pred CCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccC
Confidence 23444566643221 1233444442 23345699999999999998332
Q ss_pred ----H--HHHHHHHHHHchHHHHHHHh-CCcEEEEeCCCCHHH---HHHHHHHHHHhhccc
Q 024390 203 ----L--KEKLEAYAELSKPLEDYYQK-QKKLLEFQVGSAPVE---TWQGLLTALHLQHIN 253 (268)
Q Consensus 203 ----~--~~rl~~y~~~~~~l~~~y~~-~~~l~~Ida~~s~ee---v~~~I~~~L~~~~~~ 253 (268)
+ .++.+.|.+....+...-+. ..-+++|+++...-. |.+.|++.|...++.
T Consensus 211 s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~~~~~ 271 (289)
T 3rhf_A 211 SRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGGLQLD 271 (289)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 2 23345565554444433222 235999998765443 777777777766543
No 162
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.98 E-value=0.00037 Score=57.91 Aligned_cols=27 Identities=15% Similarity=-0.004 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.+..++|+||+||||||+.+.|...+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345799999999999999999998663
No 163
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.97 E-value=0.0065 Score=53.92 Aligned_cols=156 Identities=8% Similarity=0.061 Sum_probs=80.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhcC---CCCh-----hHHHHHHHHhccCcccHH-------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLS---PRSS-----LHKQIANAVNRGEVVSED------- 140 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~~---~~~~-----~g~~i~~~l~~G~~ip~~------- 140 (268)
++..|+|+|| ||+|+.+.|.+.+.- ..++....-|..-. .+.. ..+.....+.+|+.+...
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~Y 180 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY 180 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEe
Confidence 4556889998 799999999987631 11111111111100 0100 234455556666543110
Q ss_pred -HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecC-HHHHHhhh-----hHHHHHHHHHHHH
Q 024390 141 -IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCA-DNFIVTNR-----GGSLKEKLEAYAE 212 (268)
Q Consensus 141 -~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~-~e~l~~Rl-----~~~~~~rl~~y~~ 212 (268)
+-..-+.+.+. .+..+|+|.-+....+ +... ..| ++||+..| .+++.+ + ++.+++|++...+
T Consensus 181 Gt~~~~V~~~~~-----~G~~vildid~~g~~~---l~~~~~~p-i~IfI~pps~~~L~~-L~~R~t~~~i~~rl~~a~~ 250 (295)
T 1kjw_A 181 GTSVQSVREVAE-----QGKHCILDVSANAVRR---LQAAHLHP-IAIFIRPRSLENVLE-INKRITEEQARKAFDRATK 250 (295)
T ss_dssp EEEHHHHHHHHH-----TTCEEEECCCTTHHHH---HHHTTCCC-EEEEECCSSHHHHHH-HCTTSCHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHh-----cCCeEEEEeCHHHHHH---HHhcccCC-eEEEEECCCHHHHHH-HHhcCCHHHHHHHHHHHHH
Confidence 01122333333 3577899876443322 3222 234 78888877 444443 5 3456677765532
Q ss_pred HchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 213 LSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 213 ~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
. . .++....+. + |. +.+.++.+++|.++|....
T Consensus 251 ~--e-~~~~~~fd~-v-iv-Nd~le~a~~~l~~ii~~~~ 283 (295)
T 1kjw_A 251 L--E-QEFTECFSA-I-VE-GDSFEEIYHKVKRVIEDLS 283 (295)
T ss_dssp H--H-HHHGGGCSE-E-EC-CSSHHHHHHHHHHHHHHHS
T ss_pred H--H-HhccccCeE-E-EE-CcCHHHHHHHHHHHHHhcc
Confidence 1 1 112222222 2 33 3489999999999997653
No 164
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.96 E-value=0.00034 Score=55.98 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..++|.|+||+|||++++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999987
No 165
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.95 E-value=0.00058 Score=56.25 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVR 114 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l---~~--~~is~~dlir 114 (268)
..++|.|+||+|||++++.++..+ +. .+++..+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 569999999999999999999876 33 2355555543
No 166
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.93 E-value=0.0093 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+.++|.|+||+||||+++.+++.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999999987
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.89 E-value=0.00061 Score=56.92 Aligned_cols=35 Identities=6% Similarity=-0.085 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSI 112 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~-----~~~is~~dl 112 (268)
+..++|.|+||+||||+++.+++.++ +.+++..++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45699999999999999999998764 245555443
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.85 E-value=0.00068 Score=60.93 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~ 106 (268)
..++|.||||+||||+++.|+..++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 3589999999999999999999987643
No 169
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.84 E-value=0.00051 Score=62.39 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=28.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVR 114 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir 114 (268)
-|+|.||||+|||++|+.+++.++.+++ +..+++.
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 4899999999999999999999987654 4445543
No 170
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.84 E-value=0.0006 Score=61.11 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-CCCc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL-EVPR 106 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l-~~~~ 106 (268)
.-|+|.||||+|||++|+.+++.+ +..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 458999999999999999999988 5544
No 171
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.82 E-value=0.00062 Score=59.28 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
++|+||||+||||+++.|+...+...+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 99999999999999999999887655443
No 172
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.81 E-value=0.00067 Score=63.67 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC--CCccch
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE--VPRISM 109 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~--~~~is~ 109 (268)
..++|.||||+|||++|+.+|+.++ ++++.+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 4599999999999999999999998 555443
No 173
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.00089 Score=53.89 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.7
Q ss_pred CccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 73 ~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+.|.+..+|+|+|++|+||||+.+.|...
T Consensus 2 ~~~~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 2 GSHMKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCCCCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44556789999999999999999999863
No 174
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.79 E-value=0.00071 Score=61.41 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is 108 (268)
+..|+|.|+||+|||++|+.+++.++.+++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 4569999999999999999999999876543
No 175
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.77 E-value=0.0008 Score=59.97 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
..++|.|+||+|||++|+.+++.++.+++.+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 3489999999999999999999998876554
No 176
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.75 E-value=0.00084 Score=52.76 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
.|+|.|+||+|||++|+.|++..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999864
No 177
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.73 E-value=0.00079 Score=56.79 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..++|+||+||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56679999999999999999999876
No 178
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.73 E-value=0.00093 Score=61.51 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is 108 (268)
.+..++|.|||||||||+++.|+..++...+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 56689999999999999999999988765544
No 179
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.72 E-value=0.00096 Score=55.53 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
..+..+.|+||.||||||+.+.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4677899999999999999999998774
No 180
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.72 E-value=0.0011 Score=59.31 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+.+|.|+|++||||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 577899999999999999999999876
No 181
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.70 E-value=0.0009 Score=56.54 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=22.9
Q ss_pred CccCCCeEEEEEcCCCCChhHHHHHHH
Q 024390 73 RERRRGVHWAFIGSPRAKKHVYAEMLS 99 (268)
Q Consensus 73 ~~p~~~~~IvI~G~pGSGKST~a~~La 99 (268)
+.+ ++-.+.|+||+||||||+++.|+
T Consensus 26 gi~-~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFP-EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEE-TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCC-CCcEEEEEeCCCCCHHHHHHHHH
Confidence 444 67889999999999999999988
No 182
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.69 E-value=0.00083 Score=56.87 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=25.6
Q ss_pred ccCCCeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (268)
Q Consensus 74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l~~~~ 106 (268)
.|+ ...++|.||||+||||+|..|++.++-..
T Consensus 55 iPk-kn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 55 TPK-KNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CTT-CSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CCc-ccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 443 34599999999999999999999875433
No 183
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.68 E-value=0.001 Score=56.41 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=79.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC--C--ccchhH-HHHhhcCCCCh----hHHHHHHHHhcc----------Cc-
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV--P--RISMSS-IVRQDLSPRSS----LHKQIANAVNRG----------EV- 136 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~--~--~is~~d-lir~~~~~~~~----~g~~i~~~l~~G----------~~- 136 (268)
.+..++|+||.||||||+.+.|+..+.. . .++... -.+.....+.. ...........| ..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y 94 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY 94 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence 6778999999999999999999987641 1 111100 00100000000 011122222211 11
Q ss_pred -ccHHHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEe-cCHHHHHhhh-------hHHHHHHH
Q 024390 137 -VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFK-CADNFIVTNR-------GGSLKEKL 207 (268)
Q Consensus 137 -ip~~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld-~~~e~l~~Rl-------~~~~~~rl 207 (268)
.+.+. +.+.+. .+.-+|+|.- ...+..+.+...-..+|++. -+.+.+.+|+ ++.+.+|+
T Consensus 95 g~~~~~----v~~~l~-----~G~illLDLD---~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl 162 (219)
T 1s96_A 95 GTSREA----IEQVLA-----TGVDVFLDID---WQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRM 162 (219)
T ss_dssp EEEHHH----HHHHHT-----TTCEEEEECC---HHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred CCCHHH----HHHHHh-----cCCeEEEEEC---HHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 12222 233333 2567899933 33333333332223445544 4667888887 34566777
Q ss_pred HHHHHHchHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 208 EAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 208 ~~y~~~~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
....... .++...+ .+.+| .+.++.++++.++|....
T Consensus 163 ~~a~~e~----~~~~~~d-~~i~N--d~l~~a~~~l~~ii~~~~ 199 (219)
T 1s96_A 163 AQAVAEM----SHYAEYD-YLIVN--DDFDTALTDLKTIIRAER 199 (219)
T ss_dssp HHHHHHH----TTGGGSS-EEEEC--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----hhccCCC-EEEEC--cCHHHHHHHHHHHHHHHH
Confidence 5443322 1222222 33343 589999999999997654
No 184
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.66 E-value=0.00092 Score=61.23 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
+..|+|.|+||+|||++|+.+++.++.+++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 45699999999999999999999998766543
No 185
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.64 E-value=0.0012 Score=54.64 Aligned_cols=28 Identities=21% Similarity=0.041 Sum_probs=23.9
Q ss_pred CccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 73 ~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+.| ++..++|.|+|||||||++..|+..
T Consensus 16 gi~-~G~~~~i~G~~GsGKTtl~~~l~~~ 43 (220)
T 2cvh_A 16 GFA-PGVLTQVYGPYASGKTTLALQTGLL 43 (220)
T ss_dssp SBC-TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCc-CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 444 6778999999999999999999873
No 186
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.64 E-value=0.0011 Score=55.21 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+-.+.|+|++||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 77889999999999999999998743
No 187
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.63 E-value=0.0013 Score=54.77 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=23.6
Q ss_pred CccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 73 ~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+.+ ++-.++|.|++||||||+++.|+..
T Consensus 19 gi~-~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 19 GIP-QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp SEE-TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCc-CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344 6678999999999999999999854
No 188
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.63 E-value=0.0012 Score=62.55 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=26.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
|+|.||||+|||++++.++...+.+++.+
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 89999999999999999999998876544
No 189
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.63 E-value=0.0015 Score=58.20 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=21.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~ 103 (268)
++|.||||+||||+++.+++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998864
No 190
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.59 E-value=0.0013 Score=57.54 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++|.|+||+|||++|+.|++.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 69999999999999999999987
No 191
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.58 E-value=0.0012 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=21.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l 102 (268)
++|.|+||+|||++++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999876
No 192
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.58 E-value=0.0014 Score=53.55 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+.+.+.|.|++||||||++..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999999875
No 193
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.0011 Score=63.17 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
...++|.||||+||||+|+.+++.+|+.++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 34699999999999999999999998766543
No 194
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.57 E-value=0.00035 Score=54.92 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.|+|.|+||+|||++|+.+++..+
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cEEEECCCCccHHHHHHHHHHhCC
Confidence 389999999999999999988765
No 195
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.56 E-value=0.0013 Score=58.31 Aligned_cols=36 Identities=11% Similarity=-0.121 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIV 113 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l---~~--~~is~~dli 113 (268)
+..++|.|+||+||||+++.+++.+ +. .+++..++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 3459999999999999999999977 54 456665554
No 196
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.55 E-value=0.0014 Score=58.96 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
+..++|.||||+|||++|+.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356999999999999999999999874
No 197
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.54 E-value=0.0015 Score=53.98 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
..++|.|+||+||||+++.+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 36899999999999999999998754
No 198
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.47 E-value=0.0016 Score=54.85 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=24.7
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++.| ++..+.|.|+|||||||++..|+..
T Consensus 19 ggi~-~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIE-TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEE-TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCc-CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444 6778999999999999999999874
No 199
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.46 E-value=0.002 Score=61.44 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
++|.||||+||||+++.|+...+.+++.+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999987665443
No 200
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.45 E-value=0.0012 Score=66.35 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVRQ 115 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is--~~dlir~ 115 (268)
.-|+|.||||+|||++|+.+|+.+|...+. ..+++.+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 459999999999999999999999987654 4465543
No 201
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.44 E-value=0.0016 Score=62.69 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~ 106 (268)
++..++|.||||+||||+++.|+..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 466899999999999999999999987654
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.43 E-value=0.0015 Score=61.22 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-CCCc--cchhHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL-EVPR--ISMSSIVR 114 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l-~~~~--is~~dlir 114 (268)
.-|+|.||||+|||++|+.++..+ +.++ ++..+++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 458999999999999999999998 5544 45555543
No 203
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.41 E-value=0.0012 Score=58.80 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
.++|.|+||+|||++++.+++.++..++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 5999999999999999999999886543
No 204
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.41 E-value=0.0037 Score=55.80 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++..|+|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 356789999999999999999999876
No 205
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.41 E-value=0.0016 Score=57.39 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~i 107 (268)
..++|.|+||+|||++++.+++.++.+++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35899999999999999999999887653
No 206
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.40 E-value=0.0022 Score=60.47 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
...++|+|+||+|||++++.|++.+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4468999999999999999999987
No 207
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.40 E-value=0.0014 Score=54.09 Aligned_cols=28 Identities=25% Similarity=0.126 Sum_probs=23.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCC--ccch
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVP--RISM 109 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~--~is~ 109 (268)
++|+|++|||||++|..|+.. +.+ |+.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 789999999999999999987 653 4444
No 208
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.39 E-value=0.0027 Score=49.88 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45688999999999999999999653
No 209
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.38 E-value=0.002 Score=51.91 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=22.7
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+.+..+|+|+|.+|+||||+.++|...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 456788999999999999999999864
No 210
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.38 E-value=0.0019 Score=60.68 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
..++|.||||+||||+++.|++.++..++.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 4699999999999999999999998765544
No 211
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.37 E-value=0.0022 Score=50.18 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999999864
No 212
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.37 E-value=0.0024 Score=51.84 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=22.9
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+.+..+|+|+|.+|+||||+..++...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 356678999999999999999887653
No 213
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.36 E-value=0.004 Score=55.40 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+..+.|+|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999876
No 214
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.35 E-value=0.0029 Score=50.96 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 366789999999999999999999877
No 215
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.35 E-value=0.0024 Score=51.72 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+.+..+|+|+|.+|+||||+..+|...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 456788999999999999999999864
No 216
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.32 E-value=0.0025 Score=52.42 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..+++.|+|||||||.+-.++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999997777654
No 217
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.32 E-value=0.0015 Score=56.25 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.|+|.|+||+|||++|+.+++..+
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC
Confidence 489999999999999999998764
No 218
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.32 E-value=0.0021 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++.|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468999999999999999999877
No 219
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.30 E-value=0.0029 Score=50.16 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999999753
No 220
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.29 E-value=0.0028 Score=51.91 Aligned_cols=26 Identities=19% Similarity=0.002 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+.+.++|.|++||||||+++.|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34579999999999999999998764
No 221
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.29 E-value=0.0014 Score=58.73 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..++|.||||+||||+++.+++.+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999999877
No 222
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.28 E-value=0.0026 Score=53.20 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
..+|+++|.|+||||||++|..+..
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHH
Confidence 3568999999999999999988643
No 223
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.27 E-value=0.0026 Score=53.47 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=23.5
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++.| ++-.++|.|+|||||||++..++..
T Consensus 18 gGl~-~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 18 GGIP-ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TSEE-TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCC-CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3344 6778999999999999999888654
No 224
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.27 E-value=0.0022 Score=57.72 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..++|.|+||+|||++++.+++.+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999999876
No 225
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.26 E-value=0.0024 Score=56.88 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC----CC--ccchhHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VP--RISMSSIVRQ 115 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~----~~--~is~~dlir~ 115 (268)
+..++|.|+||+|||+++..++..+. .. +++..+++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 45699999999999999999988543 33 3566666544
No 226
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.26 E-value=0.0034 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++|.||||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 227
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.22 E-value=0.0029 Score=56.56 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+-.+.|+||+||||||+++.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 66789999999999999999999887
No 228
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.22 E-value=0.0031 Score=56.28 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=20.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l 102 (268)
++|.||+|+||||+++.|+..+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999965
No 229
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.21 E-value=0.0024 Score=57.08 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..++|.|++|+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34469999999999999999999977
No 230
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.21 E-value=0.0023 Score=51.40 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=22.0
Q ss_pred ccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 74 ~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+.+..+|+|+|.+|+||||+..+|...
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3356789999999999999999999753
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.20 E-value=0.0036 Score=56.44 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++..+.|+|+.||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999865
No 232
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.20 E-value=0.0042 Score=50.30 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+.+..+|+|+|.+|+||||+...|...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 345678999999999999999999763
No 233
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.19 E-value=0.003 Score=50.96 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999998753
No 234
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.18 E-value=0.0028 Score=49.58 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999999753
No 235
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.16 E-value=0.0039 Score=54.27 Aligned_cols=26 Identities=8% Similarity=0.000 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+-.++|+||.||||||+.+.|+..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 56689999999999999999998865
No 236
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0022 Score=57.70 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..++|.||||+|||++++.+++.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56679999999999999999999987
No 237
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.15 E-value=0.0031 Score=50.80 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999864
No 238
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.15 E-value=0.0028 Score=60.25 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVR 114 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~i--s~~dlir 114 (268)
.-|+|.|+||+|||++|+.+++..+.+++ +..++..
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT
T ss_pred CcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh
Confidence 45999999999999999999999886554 5555553
No 239
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.12 E-value=0.002 Score=57.30 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=22.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~ 103 (268)
++|.|+||+|||++|+.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 99999999999999999999876
No 240
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.12 E-value=0.004 Score=49.30 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999865
No 241
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.12 E-value=0.0031 Score=49.80 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=22.3
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
|.+..+|+|+|.+|+||||+...|..
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHc
Confidence 44567899999999999999999975
No 242
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.12 E-value=0.0038 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++|+++|.+|+||||+..+|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999864
No 243
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.08 E-value=0.0035 Score=49.16 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999999854
No 244
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.07 E-value=0.0039 Score=48.44 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998754
No 245
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.06 E-value=0.0039 Score=62.08 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..++|.|+||+|||++|+.|++.+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999997
No 246
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.0033 Score=55.03 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=21.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~ 103 (268)
++|.|+||+|||++++.+++.+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999863
No 247
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.06 E-value=0.004 Score=55.47 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..|.|+|+.||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46689999999999999999999876
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.05 E-value=0.0025 Score=64.13 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
.+..|+|+|+|||||||+++.|+..++..++.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 445699999999999999999999988765443
No 249
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.05 E-value=0.0027 Score=51.79 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=22.1
Q ss_pred ccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+.+..+|+|+|.+|+||||+.+.+...+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 44567899999999999999999887643
No 250
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.04 E-value=0.0041 Score=50.08 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
|.+..+|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999998754
No 251
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.03 E-value=0.004 Score=50.75 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
...+|+|+|++||||||+.+.|+..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999999999874
No 252
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.03 E-value=0.0043 Score=50.41 Aligned_cols=26 Identities=12% Similarity=-0.096 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999998754
No 253
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.02 E-value=0.003 Score=50.35 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+..+|+|+|++|+||||+..+|..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999998863
No 254
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.01 E-value=0.0042 Score=54.37 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++-.++|+|+|||||||+++.|+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367789999999999999999988754
No 255
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.01 E-value=0.0035 Score=56.06 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~ 103 (268)
++|.||||+||||+++.+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999864
No 256
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.01 E-value=0.0036 Score=50.59 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=21.9
Q ss_pred ccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 74 ERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 74 ~p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+....+|+|+|.+|+||||+..+|..
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 345678899999999999999999865
No 257
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.01 E-value=0.0059 Score=49.03 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
....+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999875
No 258
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.00 E-value=0.0042 Score=48.11 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+|+++|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999764
No 259
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0046 Score=49.90 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+.++|+|+|++|+||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999764
No 260
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.00 E-value=0.0042 Score=48.63 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 5578999999999999999999764
No 261
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.00 E-value=0.0042 Score=49.76 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+.+|+|+|.+|+||||+.++|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999864
No 262
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.99 E-value=0.0036 Score=56.79 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
+.++.|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999987643
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.99 E-value=0.0074 Score=55.10 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++.+|.|+|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 467789999999999999999999876
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.98 E-value=0.0052 Score=54.50 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++.+|+|+|++||||||++..|+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 265
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.97 E-value=0.0045 Score=54.20 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.++|.|+||+||||+++.+++.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 499999999999999999999864
No 266
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.96 E-value=0.0052 Score=50.94 Aligned_cols=26 Identities=15% Similarity=0.127 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+.++|+|+|.+||||||+...|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999875
No 267
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.96 E-value=0.0047 Score=50.49 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
...+|+|+|++|+||||+.+.|+..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 268
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.95 E-value=0.0053 Score=49.00 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999864
No 269
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.95 E-value=0.0047 Score=48.92 Aligned_cols=26 Identities=8% Similarity=0.035 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|++|+||||+...|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999998764
No 270
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.95 E-value=0.004 Score=49.28 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
....+|+|+|.+|+||||+...|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999864
No 271
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.95 E-value=0.0044 Score=49.23 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45678999999999999999998754
No 272
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.95 E-value=0.0045 Score=49.00 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+|+|+|++|+||||+.++|...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999753
No 273
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.95 E-value=0.0022 Score=52.36 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
..+.|+|++||||||+++.|...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999998763
No 274
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.94 E-value=0.003 Score=55.91 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
..+++.||||+|||++++.+++.++..++.+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3477778899999999999999998665544
No 275
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.93 E-value=0.0047 Score=56.33 Aligned_cols=30 Identities=20% Similarity=0.096 Sum_probs=25.6
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
|+.| ++..+.|.|+|||||||++..++...
T Consensus 56 GGi~-~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYP-RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEE-TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcc-CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4555 77889999999999999999998764
No 276
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.93 E-value=0.0032 Score=63.33 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHhhc
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDL 117 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~--~dlir~~~ 117 (268)
.-|++.||||+|||.+|+.+|...+.+++++ .+++....
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTC
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcccc
Confidence 3489999999999999999999999876654 56765543
No 277
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.93 E-value=0.0056 Score=48.45 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+..+|+|+|.+|+||||+...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4667899999999999999999975
No 278
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.92 E-value=0.0039 Score=53.36 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+||.||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 367789999999999999999998544
No 279
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.92 E-value=0.0042 Score=56.00 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=28.6
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHhC--CCccch
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISM 109 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l~--~~~is~ 109 (268)
++.| ++..++|.|+||+|||++|..++...| +.++++
T Consensus 118 GGi~-~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 118 GHRY-ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp TEEE-ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCC-CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4455 455689999999999999999997643 456666
No 280
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.92 E-value=0.0049 Score=57.61 Aligned_cols=36 Identities=8% Similarity=0.051 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-----CC--CccchhHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EV--PRISMSSIV 113 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l-----~~--~~is~~dli 113 (268)
+..++|.|+||+||||+++.++..+ +. .+++..++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 3459999999999999999999876 44 345555543
No 281
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.91 E-value=0.0053 Score=49.08 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999863
No 282
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.91 E-value=0.005 Score=48.52 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 4578999999999999999998753
No 283
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.89 E-value=0.0054 Score=49.42 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
....+|+|+|.+|+||||+...|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45678999999999999999999864
No 284
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.89 E-value=0.0053 Score=47.84 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+|+|+|.+|+||||+.+.|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999763
No 285
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.88 E-value=0.0049 Score=48.72 Aligned_cols=26 Identities=8% Similarity=-0.031 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC
Confidence 35578999999999999999999753
No 286
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.88 E-value=0.0046 Score=50.22 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
....+|+|+|.+|+||||+...|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999864
No 287
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.88 E-value=0.0054 Score=48.39 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999999864
No 288
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.88 E-value=0.0057 Score=47.55 Aligned_cols=25 Identities=12% Similarity=-0.071 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999864
No 289
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.87 E-value=0.0049 Score=51.84 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=23.5
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
|+.| ++-.++|.|+||+|||++|..++.
T Consensus 25 GGl~-~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 25 GGFP-EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TSEE-TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCC-CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4555 777899999999999999988754
No 290
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.87 E-value=0.006 Score=51.97 Aligned_cols=27 Identities=19% Similarity=-0.103 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++..+++.|+||+||||.+-.++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 467889999999999999999988876
No 291
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.86 E-value=0.0097 Score=55.83 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..|+|.|++||||||++..||..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999865
No 292
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.85 E-value=0.0055 Score=48.70 Aligned_cols=26 Identities=12% Similarity=-0.096 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 35578999999999999999999864
No 293
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.84 E-value=0.0063 Score=50.60 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..+|+|+|.+|+||||+..+|+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998874
No 294
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.84 E-value=0.0055 Score=47.93 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 468999999999999999998753
No 295
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.83 E-value=0.0068 Score=48.82 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
....+|+|+|.+|+||||+...|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999998764
No 296
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.82 E-value=0.0051 Score=55.75 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=26.0
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++.| ++..+.|.|+|||||||++..|+-..
T Consensus 126 ggi~-~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIE-TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEE-SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 78899999999999999999999875
No 297
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.81 E-value=0.0061 Score=50.32 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..+|+|+|++|+||||+..+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998754
No 298
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.0055 Score=47.90 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~ 100 (268)
..+|+|+|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 299
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.80 E-value=0.0074 Score=48.37 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
...++|+|+|.+|+||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 35568999999999999999999765
No 300
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.79 E-value=0.0055 Score=47.82 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998754
No 301
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.79 E-value=0.0043 Score=52.64 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998543
No 302
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.79 E-value=0.0048 Score=52.85 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998643
No 303
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.77 E-value=0.0067 Score=54.70 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++.++.|+|+|||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 367789999999999999999998654
No 304
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.77 E-value=0.0058 Score=48.76 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999864
No 305
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0067 Score=48.06 Aligned_cols=26 Identities=8% Similarity=0.035 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999998764
No 306
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.76 E-value=0.0057 Score=54.74 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
.++|.|+||+||||+++.+++.++.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998865
No 307
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.76 E-value=0.0062 Score=49.29 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 45678999999999999999998764
No 308
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.75 E-value=0.0046 Score=49.85 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+|+|+|++|+||||+.++|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999986
No 309
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.75 E-value=0.0029 Score=63.73 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~ 109 (268)
.+..++|.||||+||||+++.||..++..++.+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 345689999999999999999999987655443
No 310
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.75 E-value=0.0059 Score=49.01 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.+..+|+|+|.+|+||||+.+.|...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3567899999999999999988877553
No 311
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.75 E-value=0.0047 Score=49.88 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..+|+|+|.+|+||||+..+|....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999987654
No 312
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.74 E-value=0.006 Score=49.82 Aligned_cols=26 Identities=15% Similarity=0.011 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 46678999999999999999999864
No 313
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.74 E-value=0.0068 Score=49.59 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
....+|+|+|.+|+||||+...|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45688999999999999999999753
No 314
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.73 E-value=0.0057 Score=49.56 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 45678999999999999999999764
No 315
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.72 E-value=0.0059 Score=47.70 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~ 100 (268)
..+|+|+|.+|+||||+.++|..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEEECCCCCCHHHHHHHHcC
Confidence 35799999999999999998853
No 316
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.72 E-value=0.007 Score=49.35 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 56789999999999999999999753
No 317
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.72 E-value=0.0077 Score=52.75 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.-|+|.||||+|||.+|..|+..++
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4599999999999999999998653
No 318
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.71 E-value=0.0056 Score=53.23 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=23.9
Q ss_pred CccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 73 ~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+.| ++-.++|.|++||||||++..++..
T Consensus 26 gl~-~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMV-AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEE-TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred Ccc-CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344 6778999999999999999999864
No 319
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.71 E-value=0.0067 Score=47.55 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+|+|+|.+|+||||+..+|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999864
No 320
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.71 E-value=0.0056 Score=60.82 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=28.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHH
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIV 113 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~~--~is~~dli 113 (268)
.++|.||||+|||++|+.|++.++.. .+++.++.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~ 525 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhc
Confidence 59999999999999999999999754 45555544
No 321
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.70 E-value=0.0069 Score=48.16 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+...|...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 5578999999999999999998753
No 322
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.70 E-value=0.0056 Score=51.46 Aligned_cols=25 Identities=12% Similarity=-0.074 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+-++.|+|+.||||||+.+.|+-.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999864
No 323
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.68 E-value=0.0071 Score=48.73 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999754
No 324
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.68 E-value=0.0077 Score=48.89 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999999864
No 325
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.67 E-value=0.0059 Score=52.38 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998654
No 326
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.67 E-value=0.0055 Score=53.29 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998654
No 327
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.66 E-value=0.0069 Score=48.89 Aligned_cols=26 Identities=8% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999999753
No 328
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.65 E-value=0.0039 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+.+|+|+|++||||||+.+.|+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999988643
No 329
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.65 E-value=0.0053 Score=53.95 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+||.||||||+.+.|+-.+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467789999999999999999998654
No 330
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.63 E-value=0.0074 Score=49.03 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=21.4
Q ss_pred ccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 74 ~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+.+..+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999999998753
No 331
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.63 E-value=0.0068 Score=48.40 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 35678999999999999999999754
No 332
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.63 E-value=0.0065 Score=48.34 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
+..+|+|+|.+|+||||+...|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 557899999999999999999984
No 333
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.61 E-value=0.0062 Score=53.66 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~~is~~d 111 (268)
..++|.|++|+||||+++.+++..+..+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 479999999999999999999988766676643
No 334
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.61 E-value=0.008 Score=57.20 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++.+|.|+|+.||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 467899999999999999999999865
No 335
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.60 E-value=0.0082 Score=47.62 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..++...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999998754
No 336
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.60 E-value=0.0057 Score=53.36 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467789999999999999999998654
No 337
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.60 E-value=0.0096 Score=49.43 Aligned_cols=27 Identities=11% Similarity=-0.082 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++..+++.|++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457889999999999999999998887
No 338
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.59 E-value=0.0061 Score=53.15 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 467789999999999999999998654
No 339
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.59 E-value=0.0072 Score=52.09 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+-++.|+|+.||||||+.+.|+-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36678999999999999999999874
No 340
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.59 E-value=0.0087 Score=54.20 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..|.|+|+|||||||+...|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998754
No 341
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.59 E-value=0.006 Score=52.57 Aligned_cols=27 Identities=11% Similarity=0.381 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998754
No 342
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.58 E-value=0.0087 Score=54.18 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..+|+|+|.||+||||++..|+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998875
No 343
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.58 E-value=0.0087 Score=54.73 Aligned_cols=26 Identities=8% Similarity=0.000 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..++|+|++||||||+.+.|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56689999999999999999998865
No 344
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.57 E-value=0.0069 Score=60.28 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=28.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQ 115 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~ 115 (268)
.++|.||||+|||++|+.|++.+ .+..+++.++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 59999999999999999999986 2455666665543
No 345
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.56 E-value=0.0078 Score=56.31 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..|+|.|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999765
No 346
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.56 E-value=0.0074 Score=54.76 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=24.6
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++.| ++..+.|.|+|||||||+|..++..
T Consensus 56 GGl~-~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 56 GGLP-RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SSEE-TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcc-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555 6778999999999999999998864
No 347
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.56 E-value=0.0062 Score=52.74 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 348
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.56 E-value=0.0077 Score=52.51 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+-++.|+|+.||||||+.+.|+-.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999874
No 349
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.55 E-value=0.0065 Score=53.14 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998754
No 350
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.55 E-value=0.0071 Score=51.96 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l 102 (268)
-++.|+|+.||||||+.+.|+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998654
No 351
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.54 E-value=0.0064 Score=51.73 Aligned_cols=27 Identities=33% Similarity=0.286 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 352
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.54 E-value=0.0066 Score=52.73 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 367789999999999999999998654
No 353
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.54 E-value=0.0093 Score=53.81 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=25.1
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++.| ++..+.|.|+|||||||+|..++..
T Consensus 117 GGl~-~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIE-SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBC-SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445 7788999999999999999999875
No 354
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.53 E-value=0.0065 Score=52.07 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 366789999999999999999998654
No 355
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=95.53 E-value=0.16 Score=50.31 Aligned_cols=157 Identities=9% Similarity=0.032 Sum_probs=78.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHhhc---CCCCh-----hHHHHHHHHhccCcccH--------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDL---SPRSS-----LHKQIANAVNRGEVVSE-------- 139 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~-~~is~~dlir~~~---~~~~~-----~g~~i~~~l~~G~~ip~-------- 139 (268)
++..|+|+|| ||+|+.+.|.+.+.- ..++....-|..- ..+.. ..+++...+.+|+.+..
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y 606 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY 606 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence 4567889998 499999999887631 1122211112110 01110 23344555555554321
Q ss_pred HHHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhh-cCCCeEEEEecCHHHHHhhh-----hHHHHHHHHHHHHH
Q 024390 140 DIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-----GGSLKEKLEAYAEL 213 (268)
Q Consensus 140 ~~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~~e~l~~Rl-----~~~~~~rl~~y~~~ 213 (268)
-+-.+-+.+.+. .+..+|+|.-+.. ++.+... ..| ++||+..+.-..++++ ++.+++|++.-.+.
T Consensus 607 Gt~~~~v~~~~~-----~g~~~ildi~~~~---~~~l~~~~~~p-~~ifi~pps~~~L~~l~~R~t~~~~~~rl~~a~~~ 677 (721)
T 2xkx_A 607 GTSVQSVREVAE-----QGKHCILDVSANA---VRRLQAAHLHP-IAIFIRPRSLENVLEINKRITEEQARKAFDRATKL 677 (721)
T ss_pred eeeHHHHHHHHH-----CCCcEEEeCCHHH---HHHHHhcccCC-EEEEEeCCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 012233444444 3567888864322 2233321 233 7888887643333334 33455666544221
Q ss_pred chHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhc
Q 024390 214 SKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 214 ~~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~ 251 (268)
+..|...-.. .|. +.+.++.++++.++|....
T Consensus 678 ----e~~~~~~fd~-vi~-Nd~l~~a~~~l~~~i~~~~ 709 (721)
T 2xkx_A 678 ----EQEFTECFSA-IVE-GDSFEEIYHKVKRVIEDLS 709 (721)
T ss_pred ----HHhccccCcE-EEE-CcCHHHHHHHHHHHHHhcc
Confidence 1111111112 343 3489999999999997654
No 356
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.53 E-value=0.0053 Score=58.51 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
..|+|.|+||+|||++|+.|++..+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4699999999999999999999774
No 357
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.52 E-value=0.011 Score=50.44 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+...+++.|.+|+||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999999765
No 358
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0057 Score=49.48 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
....+|+|+|.+|+||||+...|...-
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 466789999999999999999998653
No 359
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.50 E-value=0.042 Score=48.73 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+.++|.||||+||||.++.|++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 4679999999999999999999864
No 360
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.50 E-value=0.0087 Score=48.69 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45678999999999999999999764
No 361
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0084 Score=49.44 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999998764
No 362
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.49 E-value=0.0059 Score=51.58 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356679999999999999999998654
No 363
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.0083 Score=48.17 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999999764
No 364
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.48 E-value=0.0082 Score=48.74 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+.+++...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999863
No 365
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.48 E-value=0.009 Score=47.80 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+..+|...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999998754
No 366
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.48 E-value=0.0092 Score=48.53 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+..+|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999999864
No 367
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.48 E-value=0.0096 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+|+|+|.+|+||||+..+|...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999754
No 368
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.48 E-value=0.0071 Score=52.48 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998654
No 369
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.0098 Score=47.78 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
+..+|+|+|.+|+||||+..+|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999999984
No 370
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.011 Score=47.74 Aligned_cols=24 Identities=13% Similarity=0.064 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
...+|+|+|.+|+||||+...|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 457899999999999999999976
No 371
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.41 E-value=0.0071 Score=49.45 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
....+|+|+|.+|+||||+..+|..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3557899999999999999999863
No 372
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.41 E-value=0.0079 Score=55.67 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.5
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
++.+ ++-.+.|+|+|||||||++..|+-
T Consensus 173 GGI~-~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 173 GGVE-TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TSEE-TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcC-CCcEEEEEcCCCCChHHHHHHHHH
Confidence 4444 778899999999999999998763
No 373
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.38 E-value=0.0077 Score=52.03 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 366789999999999999999998654
No 374
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.38 E-value=0.0076 Score=52.97 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 375
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.38 E-value=0.0081 Score=52.30 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 366789999999999999999998654
No 376
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.36 E-value=0.0098 Score=48.08 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 377
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.36 E-value=0.011 Score=49.82 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=21.4
Q ss_pred CccCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 73 RERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 73 ~~p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
+.|.+..+|+|+|.+|+|||++..++..
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHh
Confidence 3466778999999999999999999875
No 378
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.35 E-value=0.0096 Score=49.01 Aligned_cols=33 Identities=9% Similarity=-0.042 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~ 110 (268)
.+.-|+|.|++|+||||+|..|.++ |...++-|
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD 47 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCDD 47 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence 4567999999999999999999884 77666554
No 379
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.35 E-value=0.0097 Score=48.76 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 45678999999999999999998753
No 380
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.35 E-value=0.0098 Score=48.59 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
....+|+|+|.+|+||||+...|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999864
No 381
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.34 E-value=0.009 Score=47.73 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+|+|+|.+|+||||+..+|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 47999999999999999999764
No 382
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.32 E-value=0.0073 Score=54.96 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.+..++|.|+.||||||+.+.|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 566799999999999999999998764
No 383
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.32 E-value=0.013 Score=48.95 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+...|...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6688999999999999999998753
No 384
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.31 E-value=0.013 Score=52.61 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+..|.|+|++|+||||++..||..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999866
No 385
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.29 E-value=0.013 Score=53.44 Aligned_cols=25 Identities=12% Similarity=0.003 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+-.++|+||.||||||+.+.|+..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3489999999999999999998765
No 386
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.29 E-value=0.0094 Score=51.53 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.5
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
|.+..+|+|+|.||+||||+...|..
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHC
Confidence 34667899999999999999999975
No 387
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.29 E-value=0.011 Score=48.90 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
....+|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 388
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.28 E-value=0.0094 Score=53.20 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=25.3
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++.| ++..+.|.|+||||||++|..++...
T Consensus 102 GGl~-~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 102 GGIE-TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEE-TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCC-CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4455 67789999999999999999998753
No 389
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.28 E-value=0.0073 Score=53.54 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
.|+|.|+||+|||++|+.+++..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHS
T ss_pred cEEEECCCCchHHHHHHHHHHhC
Confidence 48999999999999999999854
No 390
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.28 E-value=0.011 Score=48.59 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 391
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.27 E-value=0.012 Score=47.77 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
...+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998753
No 392
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.27 E-value=0.0086 Score=51.80 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 366789999999999999999998654
No 393
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.27 E-value=0.01 Score=50.08 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
....+|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 35678999999999999999998754
No 394
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.27 E-value=0.0083 Score=47.58 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+..++...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999864
No 395
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.26 E-value=0.01 Score=48.51 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+..+|+|+|.+|+||||+..+|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3567899999999999999999864
No 396
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.25 E-value=0.011 Score=52.57 Aligned_cols=29 Identities=14% Similarity=-0.052 Sum_probs=24.8
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++.| ++..++|.|+||||||++|..++..
T Consensus 93 GGl~-~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 93 GGLE-SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SSEE-TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcc-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455 6788999999999999999999864
No 397
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.24 E-value=0.011 Score=48.92 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+..+|+|+|.+|+||||+...|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 3567899999999999999999974
No 398
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.21 E-value=0.013 Score=48.60 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 45688999999999999999998764
No 399
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.21 E-value=0.015 Score=50.42 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..++|+|+|.||+||||+...|...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999754
No 400
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.21 E-value=0.011 Score=53.83 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
++..+|+|+|.+||||||+++.+.-.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 5678999999999999999999864443
No 401
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.0096 Score=56.08 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+.++.|+|+.||||||+++.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 67789999999999999999998754
No 402
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.20 E-value=0.012 Score=53.56 Aligned_cols=37 Identities=14% Similarity=0.041 Sum_probs=28.4
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccch
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISM 109 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~ 109 (268)
++.| ++..++|.|+||+||||+|..++... .+.+|++
T Consensus 58 GGl~-~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 58 GGLP-MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SSEE-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcc-CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3455 67789999999999999999988653 3445665
No 403
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.17 E-value=0.012 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.++|+|+|+||+||||+...|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999754
No 404
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.17 E-value=0.014 Score=52.58 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++.+|.|+|+||+||||+...|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367789999999999999999998754
No 405
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.012 Score=48.87 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 45678999999999999999999763
No 406
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.16 E-value=0.012 Score=48.34 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
...+|+|+|.+|+||||+...|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 4568999999999999999999863
No 407
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.14 E-value=0.012 Score=53.80 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+||.||||||+.+.|+-..
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 356789999999999999999998644
No 408
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.13 E-value=0.0078 Score=60.81 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..++|+|+||+|||++++.|++.+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999987
No 409
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.12 E-value=0.013 Score=51.12 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+.|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999765
No 410
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.12 E-value=0.012 Score=47.98 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999763
No 411
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.12 E-value=0.012 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
+..+|+|+|++|+||||+.++|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999864
No 412
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.11 E-value=0.012 Score=55.09 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+.+|+|+|++|+||||++..|+..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999875
No 413
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.10 E-value=0.012 Score=48.68 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=23.5
Q ss_pred ccCCCeEEEEEcCCCCChhHHHHH-HHHHh
Q 024390 74 ERRRGVHWAFIGSPRAKKHVYAEM-LSKLL 102 (268)
Q Consensus 74 ~p~~~~~IvI~G~pGSGKST~a~~-La~~l 102 (268)
.+.+..+|+|+|.+|+||||+..+ +...+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 345678999999999999999998 54444
No 414
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.09 E-value=0.013 Score=50.02 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..+|+|+|.+|+||||+..+|...-
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999997543
No 415
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.08 E-value=0.014 Score=47.80 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..++...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 35678999999999999999998853
No 416
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.07 E-value=0.017 Score=53.81 Aligned_cols=27 Identities=11% Similarity=-0.140 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.+-.++|+||.||||||+.+.|...++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 455799999999999999999998775
No 417
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.07 E-value=0.013 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+||.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 366789999999999999999998654
No 418
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=95.07 E-value=0.24 Score=43.73 Aligned_cols=161 Identities=12% Similarity=0.016 Sum_probs=77.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCc-cchhHHHHh---hcCCCCh-----hHHHHHHHHhccCcccHH-------
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIVRQ---DLSPRSS-----LHKQIANAVNRGEVVSED------- 140 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~-is~~dlir~---~~~~~~~-----~g~~i~~~l~~G~~ip~~------- 140 (268)
++.-|||+|| ||+|+.+.|.+.+.-.+ .++..--|. -...+.. ..+.....+.+|+.+...
T Consensus 99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~Y 175 (292)
T 3tvt_A 99 YTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLY 175 (292)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEcccee
Confidence 4445888887 59999999988764211 111111111 0001100 123344455555432110
Q ss_pred -HHHHHHHHHHHcCCccCccEEEEcCCcCCHHHHHHHHhhcCCCeEEEEecC-HHHHHhhh----hHHHHHHHHHHHHHc
Q 024390 141 -IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNR----GGSLKEKLEAYAELS 214 (268)
Q Consensus 141 -~~~~ll~~~l~~~~~~~~~g~IlDGfPr~~~qa~~l~~~~~~d~vV~Ld~~-~e~l~~Rl----~~~~~~rl~~y~~~~ 214 (268)
+...-+.+.+.+ +..+|+|--+... ..+......-++||+..| .+++.+|+ .+..+++.....+
T Consensus 176 GT~~~~V~~~~~~-----gk~viLdid~qg~---~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k-- 245 (292)
T 3tvt_A 176 GTSVASVREVAEK-----GKHCILDVSGNAI---KRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIK-- 245 (292)
T ss_dssp EEEHHHHHHHHHH-----TCEEEECCCTHHH---HHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHH--
T ss_pred EEehHHHHHHHHc-----CCcEEEeccchhh---hhcccccccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHHH--
Confidence 012233344443 5678888654322 333332222357777764 55666666 2233333322211
Q ss_pred hHHHHHHHhCCcEEEEeCCCCHHHHHHHHHHHHHhhcccc
Q 024390 215 KPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINA 254 (268)
Q Consensus 215 ~~l~~~y~~~~~l~~Ida~~s~eev~~~I~~~L~~~~~~~ 254 (268)
++..|.+.-.. +|. +.+.++.+++|.++|......+
T Consensus 246 --~e~e~~~~fD~-vIv-Nddle~a~~~l~~iI~~e~~~~ 281 (292)
T 3tvt_A 246 --MEQEFGEYFTG-VVQ-GDTIEEIYSKVKSMIWSQSGPT 281 (292)
T ss_dssp --HHHHHTTTCSE-EEC-CSSHHHHHHHHHHHHHHHTCSE
T ss_pred --HHHhhhhhCCE-EEE-CcCHHHHHHHHHHHHHHhhCCC
Confidence 12222221112 232 5689999999999998765443
No 419
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.05 E-value=0.014 Score=48.04 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+..+|+|+|.+|+||||+...|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 4567899999999999999999875
No 420
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.04 E-value=0.013 Score=53.82 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+||.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 366789999999999999999998654
No 421
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.014 Score=47.15 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35578999999999999999999864
No 422
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.01 E-value=0.014 Score=53.33 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+||.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 366789999999999999999998654
No 423
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.96 E-value=0.014 Score=53.12 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+||.||||||+.+.|+-.+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 366789999999999999999998644
No 424
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.95 E-value=0.012 Score=51.98 Aligned_cols=27 Identities=33% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467789999999999999999998653
No 425
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.95 E-value=0.017 Score=55.10 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++.+|+|+|.|||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356689999999999999999999765
No 426
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.93 E-value=0.019 Score=51.33 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~~ 105 (268)
..++|.|+||+|||++++.+++.++..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 359999999999999999999998754
No 427
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.93 E-value=0.015 Score=53.17 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 467789999999999999999998654
No 428
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.93 E-value=0.012 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+-++.|+|+.||||||+.+.|+-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6689999999999999999998654
No 429
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.92 E-value=0.018 Score=47.19 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.+|+||||+...|...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999998853
No 430
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.92 E-value=0.015 Score=53.28 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+||.||||||+.+.|+-.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 366789999999999999999998654
No 431
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.92 E-value=0.0088 Score=47.66 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=11.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
...+|+|+|.+|+||||+..+|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999874
No 432
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.91 E-value=0.013 Score=56.96 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
..++|.|+||+||||+++.|+..++.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 46999999999999999999998753
No 433
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.90 E-value=0.012 Score=47.23 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLS 99 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La 99 (268)
+..+|+|+|.+|+||||+..+|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999999885
No 434
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.84 E-value=0.023 Score=48.57 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+|++.|+||+||||++-.++..+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4679999999999999988888764
No 435
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.81 E-value=0.016 Score=53.03 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+||.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 356789999999999999999998654
No 436
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.80 E-value=0.0093 Score=53.21 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467789999999999999999998765
No 437
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.78 E-value=0.012 Score=59.38 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++|.|+||+|||++|+.|++.+
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999987
No 438
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.78 E-value=0.011 Score=53.24 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.+..++|.|+.||||||+.+.|+..+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456799999999999999999988764
No 439
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.78 E-value=0.02 Score=46.57 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
...+|+|+|.||+||||+..++...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 440
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.77 E-value=0.02 Score=51.54 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
|+.| ++ ++.|.|+|||||||+|-.++..
T Consensus 24 GGl~-~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQ-SG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBC-SE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCc-CC-eEEEECCCCCCHHHHHHHHHHH
Confidence 5666 56 7999999999999998887654
No 441
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.76 E-value=0.022 Score=48.80 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=23.4
Q ss_pred ccCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 74 ~p~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
....+.+.++.|++||||||.+-.++.++
T Consensus 15 ~~~~g~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 15 SKTRGQIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp ---CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34568899999999999999988887776
No 442
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.75 E-value=0.019 Score=57.01 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..++|+|+||+|||++++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999999987
No 443
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.74 E-value=0.02 Score=50.72 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..|++.|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6788999999999999999999776
No 444
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.72 E-value=0.023 Score=50.23 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..+.|+|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56678889999999999999999865
No 445
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.68 E-value=0.012 Score=53.37 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-.+.|+||.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 356789999999999999999998644
No 446
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.68 E-value=0.022 Score=50.08 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=24.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC--Cccch
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEV--PRISM 109 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~--~~is~ 109 (268)
.++|.|++|+|||++++.+++..+. .+++.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 7999999999999999999998753 34444
No 447
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.66 E-value=0.019 Score=49.06 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
...+|+|+|.||+||||+...|...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 5678999999999999999998653
No 448
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.65 E-value=0.019 Score=53.00 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+-++.|+||.||||||+.+.|+-.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 46778999999999999999999864
No 449
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.65 E-value=0.022 Score=50.61 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++-.++|.|+||+||||++..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367789999999999999999998654
No 450
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.60 E-value=0.019 Score=51.95 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.5
Q ss_pred CeEEEE--EcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAF--IGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI--~G~pGSGKST~a~~La~~l 102 (268)
+..++| .|+||+||||+++.+++.+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 346777 9999999999999998875
No 451
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.60 E-value=0.019 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..+.|+|++|+||||+.+.|+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 45689999999999999999998543
No 452
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.59 E-value=0.029 Score=49.12 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
...++|+|+|.||+||||+...|...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 35568999999999999999999754
No 453
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.57 E-value=0.022 Score=47.61 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
...+|+|+|.||+||||+..++..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999874
No 454
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.53 E-value=0.02 Score=50.58 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|.|+|+||+||||+...|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 35568999999999999999999753
No 455
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.49 E-value=0.023 Score=49.55 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
..+|+|+|.||+||||+...|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999864
No 456
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.49 E-value=0.021 Score=54.79 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=24.6
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
|..+-++.|+|+.||||||+.+.|+-.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3578899999999999999999998654
No 457
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.48 E-value=0.031 Score=47.31 Aligned_cols=27 Identities=15% Similarity=-0.104 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++.+.++.|++||||||.+-.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457889999999999999999998876
No 458
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.48 E-value=0.019 Score=54.64 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEML 98 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~L 98 (268)
++-.+.|+|++||||||+++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 6778999999999999999994
No 459
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.46 E-value=0.012 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
...++|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999765
No 460
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.45 E-value=0.023 Score=50.27 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..+.|+|++||||||+.+.|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45689999999999999999998 54
No 461
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.43 E-value=0.024 Score=51.78 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=28.5
Q ss_pred CCccCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 024390 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (268)
Q Consensus 72 ~~~p~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~ 110 (268)
++.| ++..++|.|+||+||||+|..++... .+.+|++.
T Consensus 69 GGl~-~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 69 GGIP-RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SSEE-TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcc-CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3455 66778999999999999999987653 34456653
No 462
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.38 E-value=0.017 Score=55.04 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..++|+|++||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45669999999999999999998765
No 463
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.37 E-value=0.013 Score=53.36 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+||.||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 366789999999999999999998644
No 464
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.33 E-value=0.023 Score=50.55 Aligned_cols=25 Identities=12% Similarity=-0.121 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+.+.++|.|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3467899999999999999999864
No 465
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.31 E-value=0.031 Score=52.20 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++-.++|.|+||+||||++..++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6778999999999999999998774
No 466
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.31 E-value=0.03 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
..+|+|+.||||||+.+.|.--++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 689999999999999999987665
No 467
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.31 E-value=0.033 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++..|+|.|++|+||||++..||..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999765
No 468
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.26 E-value=0.021 Score=50.47 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+.|+|++||||||+.+.|+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhccc
Confidence 4568999999999999999999743
No 469
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.22 E-value=0.027 Score=52.32 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+.|+|++||||||+.+.|+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4458999999999999999999874
No 470
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.22 E-value=0.025 Score=48.75 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 024390 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 79 ~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++|+|+|.|||||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999754
No 471
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.21 E-value=0.0091 Score=48.43 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=7.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+|+|+|.+|+||||+...|...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEEC-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999988754
No 472
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.19 E-value=0.027 Score=49.89 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=22.5
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
|...-.|.|+|.||+||||+...|...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345568999999999999999998753
No 473
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.19 E-value=0.028 Score=52.53 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l 102 (268)
.++|.|+|||||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998876
No 474
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.18 E-value=0.026 Score=52.67 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.0
Q ss_pred CCeE--EEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVH--WAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~--IvI~G~pGSGKST~a~~La~~ 101 (268)
.|-. +.|+|++||||||+.+.|+..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4445 999999999999999999864
No 475
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.05 E-value=0.036 Score=51.15 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.++.++.|+|+||+||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4678999999999999999999987
No 476
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.99 E-value=0.012 Score=52.72 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+..+|+|+|.+|+||||+..+|..
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred cCcceEEEECCCCccHHHHHHHHhC
Confidence 3566899999999999999998854
No 477
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.97 E-value=0.012 Score=57.25 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC
Q 024390 80 HWAFIGSPRAKKHVYAEMLSKLLEV 104 (268)
Q Consensus 80 ~IvI~G~pGSGKST~a~~La~~l~~ 104 (268)
.|+|.|+||+|||++|+.+++..+-
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCC
Confidence 6999999999999999999998753
No 478
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.96 E-value=0.013 Score=48.17 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
....+|+|+|.+|+||||+..+|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999988863
No 479
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.94 E-value=0.035 Score=48.22 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
+..+|+|+|.||+||||+...|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999764
No 480
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.92 E-value=0.036 Score=50.15 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.+|-++.|+|+.|+||||+.+.|+....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778899999999999999999998764
No 481
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=93.87 E-value=0.053 Score=46.42 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCC---------CCChhHHHHHHHH
Q 024390 75 RRRGVHWAFIGSP---------RAKKHVYAEMLSK 100 (268)
Q Consensus 75 p~~~~~IvI~G~p---------GSGKST~a~~La~ 100 (268)
+.+..+|+|+|.+ |+||||+..+|..
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 3566899999999 9999999999986
No 482
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.87 E-value=0.042 Score=51.23 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
.+..|+|.|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999876
No 483
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.93 E-value=0.011 Score=48.37 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.+..+|+|+|.+|+||||+..+|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3567899999999999999988864
No 484
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.85 E-value=0.036 Score=53.60 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 78 ~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
...++|.|+||+||||++..|...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999988754
No 485
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.75 E-value=0.032 Score=49.33 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
-...|+|+|++|+||||+.+.|..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999864
No 486
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.71 E-value=0.04 Score=48.70 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+.+|+|+|.||+||||+..+|...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999998654
No 487
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.68 E-value=0.043 Score=50.97 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
...+|+|+|+||+||||+.+.|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999764
No 488
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.67 E-value=0.043 Score=51.31 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
.++-++.|+|+.||||||+.+.|+....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4678899999999999999999998764
No 489
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.64 E-value=0.049 Score=50.71 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
++-.++|.|+||+|||+++..++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998864
No 490
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.54 E-value=0.04 Score=52.46 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
++-.+.|.|++||||||+++.++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67789999999999999999998654
No 491
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.50 E-value=0.042 Score=52.67 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 492
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.48 E-value=0.041 Score=53.11 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
..|-.+.|+|+.||||||+.+.|+..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998765
No 493
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.46 E-value=0.035 Score=53.60 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l~ 103 (268)
..|-.+.|+|+.||||||+.+.|+..+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 3677899999999999999999987653
No 494
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.42 E-value=0.016 Score=51.72 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~ 101 (268)
.+..+.|+|++|+||||+.+.|+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 4668999999999999999998643
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.42 E-value=0.014 Score=47.53 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=20.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLS 99 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La 99 (268)
....+|+|+|.+|+||||+...|.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999988765
No 496
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=93.41 E-value=0.81 Score=40.66 Aligned_cols=134 Identities=14% Similarity=0.101 Sum_probs=66.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHhhcCCCChhHHHHHHHHhccCcccHHHHHHHHHHHHHcCCccCccE
Q 024390 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIG 160 (268)
Q Consensus 81 IvI~G~pGSGKST~a~~La~~l~~~~is~~dlir~~~~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~g 160 (268)
|||+|| ||+|+.++|.+.+.-.+-..-. + .+ .+.+|+-++.+.+.+. +. .+..
T Consensus 148 vVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~----------~r----~i~~~~fis~~~V~~v----l~-----~Gk~ 200 (308)
T 3kfv_A 148 VVILGP---VADIAMQKLTAEMPDQFEIAET-V----------SR----TDSPSKIIKLDTVRVI----AE-----KDKH 200 (308)
T ss_dssp EEEEST---THHHHHHHHHHHCTTTEEECCC-C----------------------CCCHHHHHHH----HH-----TTCE
T ss_pred EEEeCc---cHHHHHHHHHHhCccccccccc-c----------cc----cccCCCeecHHHHHHH----HH-----CCCc
Confidence 888999 7999999988765322111100 0 00 0345666655544444 33 3678
Q ss_pred EEEcCCcCCHHHHHHHHhh-cCCCeEEEEecC-HHHHHhhh-------hHHHHHHHHHHHHHchHHHHHH-HhCCcEEEE
Q 024390 161 FILDGLPRSRIQAEILDQL-AEIDLVVNFKCA-DNFIVTNR-------GGSLKEKLEAYAELSKPLEDYY-QKQKKLLEF 230 (268)
Q Consensus 161 ~IlDGfPr~~~qa~~l~~~-~~~d~vV~Ld~~-~e~l~~Rl-------~~~~~~rl~~y~~~~~~l~~~y-~~~~~l~~I 230 (268)
+|||=-|.. ++.+... ..| ++||+.-| .+++.+|. ++.++++++.-. .++..| ...+.++.|
T Consensus 201 ~ILDId~QG---a~~lk~~~~~p-i~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~----eiE~~~~~~FD~vI~V 272 (308)
T 3kfv_A 201 ALLDVTPSA---IERLNYVQYYP-IVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQ----KLRKHSSHLFTATIPL 272 (308)
T ss_dssp EEECCCHHH---HHHHHHTTCCC-EEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHH----HHHHHHGGGCSEEEEE
T ss_pred EEEEECHHH---HHHHHhcCCCC-EEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH----HHHHhhhccCcEEEEc
Confidence 899843222 2334332 334 56666654 44555332 123333333321 222223 223444335
Q ss_pred eCCCCHHHHHHHHHHHHHhhc
Q 024390 231 QVGSAPVETWQGLLTALHLQH 251 (268)
Q Consensus 231 da~~s~eev~~~I~~~L~~~~ 251 (268)
| .+.++.++++.++|....
T Consensus 273 N--Ddle~A~~~L~~iI~~~~ 291 (308)
T 3kfv_A 273 N--GTSDTWYQELKAIIREQQ 291 (308)
T ss_dssp C--SSSTHHHHHHHHHHHHHT
T ss_pred C--CCHHHHHHHHHHHHHHhc
Confidence 4 567888999999887654
No 497
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.40 E-value=0.045 Score=53.29 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=24.7
Q ss_pred cCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024390 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (268)
Q Consensus 75 p~~~~~IvI~G~pGSGKST~a~~La~~l 102 (268)
+..|-++.|+||.||||||+.+.|+-.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4578899999999999999999998654
No 498
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.39 E-value=0.11 Score=57.08 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=46.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHhhc--CCCChhHHHHHHHHhccCcccHHHHHHHHHH
Q 024390 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDL--SPRSSLHKQIANAVNRGEVVSEDIIFGLLSK 148 (268)
Q Consensus 76 ~~~~~IvI~G~pGSGKST~a~~La~~l-----~~~~is~~dlir~~~--~~~~~~g~~i~~~l~~G~~ip~~~~~~ll~~ 148 (268)
.++..++|.||||+|||++|..++..- .+.+|++.+.+.... ..+.++. +. .--...|.+...+.+..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~----~l-~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDID----NL-LCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTT----TC-EEECCSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCch----hc-eeecCChHHHHHHHHHH
Confidence 377889999999999999999987653 234666653221110 0000000 00 00012244445556655
Q ss_pred HHHcCCccCccEEEEcCC
Q 024390 149 RLEDGYYRGEIGFILDGL 166 (268)
Q Consensus 149 ~l~~~~~~~~~g~IlDGf 166 (268)
.+.+. ..+-+|+|.+
T Consensus 1500 lvr~~---~~~lVVIDsi 1514 (2050)
T 3cmu_A 1500 LARSG---AVDVIVVDSV 1514 (2050)
T ss_dssp HHHHT---CCSEEEESCG
T ss_pred HHhcC---CCCEEEEcCh
Confidence 55554 3578899975
No 499
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.37 E-value=0.19 Score=47.00 Aligned_cols=24 Identities=13% Similarity=-0.111 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~ 100 (268)
.....+|.|+|||||||....+++
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 455789999999999999988765
No 500
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.36 E-value=0.047 Score=48.84 Aligned_cols=33 Identities=21% Similarity=0.041 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 024390 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (268)
Q Consensus 77 ~~~~IvI~G~pGSGKST~a~~La~~l~~~~is~~ 110 (268)
.+.-++|.|++|+||||++..|.++ |...++-|
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD 175 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD 175 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence 4667999999999999999999875 76666443
Done!