BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024391
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 99/254 (38%), Gaps = 30/254 (11%)
Query: 10 REEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLS--YVSG 67
+E+G FWRGN+ ++ P A+ F K K G + H Y + SG
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG--VDRHKQFWRYFAGNLASG 119
Query: 68 ALAGCAATVGSYPFDLLRTILASQ----GEPKVYPTMRSAFVDIISTRGFRGLYAGLSPT 123
AG + YP D RT LA+ + + + + I + G RGLY G + +
Sbjct: 120 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 179
Query: 124 LVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKL 183
+ II Y FG YDT K D N+ ++ A L
Sbjct: 180 VQGIIIYRAAYFGVYDTAKGMLPD--------------PKNVHIIVSWMIAQTVTAVAGL 225
Query: 184 VCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTV 243
V +P D V++R ++ ++ GA + Y D +I + EG +KG S V
Sbjct: 226 VSYPFDTVRRRMMMQSGRK----GADI---MYTGTVDCWRKIAKDEGPKAFFKG-AWSNV 277
Query: 244 KAAPAGAVTFVAYE 257
GA V Y+
Sbjct: 278 LRGMGGAFVLVLYD 291
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 8 IFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSG 67
IF+ +GL G ++G ++ ++ Y A F V K HI +S ++
Sbjct: 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNV--HIIVSWMIAQTVT 220
Query: 68 ALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVD 106
A+AG SYPFD +R + Q K M + VD
Sbjct: 221 AVAGLV----SYPFDTVRRRMMMQSGRKGADIMYTGTVD 255
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 62 LSYVSGALAGCAATVGSYPFDLLRTILASQGEPK---------VYPTMRSAFVDIISTRG 112
+ ++ A C A + ++P D + L QGE + Y + + ++ T G
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 113 FRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFV 172
R LY GL L + +A ++ G YD+ K++ + + G + L +
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY-------TKGSEHAGIGSRL------L 109
Query: 173 CGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWA 232
G G A V P DVVK RFQ + + G R Y++ +A I + EG
Sbjct: 110 AGSTTGALAVAVAQPTDVVKVRFQAQA-----RAGG---GRRYQSTVEAYKTIAREEGIR 161
Query: 233 GLYKGIVPSTVKAAPAGAVTFVAYEYASDWL 263
GL+KG P+ + A V Y+ D L
Sbjct: 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 102/253 (40%), Gaps = 32/253 (12%)
Query: 8 IFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSG 67
+ R EG + G V L M + +++ + +K F +K H + + L ++G
Sbjct: 57 MVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQF---YTKGSEHAGIGSRL--LAG 111
Query: 68 ALAGCAATVGSYPFDLLRTILASQ---GEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTL 124
+ G A + P D+++ +Q G + Y + A+ I G RGL+ G SP +
Sbjct: 112 STTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNV 171
Query: 125 VEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLV 184
+ TYD K + N + ++L F AG C ++
Sbjct: 172 ARNAIVNCAELVTYDLIKDTLLKANLM----------TDDLPCH--FTSAFGAGFCTTVI 219
Query: 185 CHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVK 244
P+DVVK R+ L ++ G H A +++ EG YKG +PS ++
Sbjct: 220 ASPVDVVKTRYMNSALGQYHSAG----HCAL--------TMLRKEGPRAFYKGFMPSFLR 267
Query: 245 AAPAGAVTFVAYE 257
V FV YE
Sbjct: 268 LGSWNVVMFVTYE 280
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 3 QATKDIFREEGLWGFWRGNVPALLM--------VMPYTAIQFTVLHKLKTFAAGSSKAEN 54
+A K I REEG+ G W+G P + ++ Y I+ T+L N
Sbjct: 149 EAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK------------AN 196
Query: 55 HINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFR 114
+ + S AG TV + P D+++T + + + A ++ G R
Sbjct: 197 LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALT-MLRKEGPR 255
Query: 115 GLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTM 146
Y G P+ + + + + F TY+ KR M
Sbjct: 256 AFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
>pdb|1ZQ1|A Chain A, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
pdb|1ZQ1|B Chain B, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
Length = 438
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 95 KVYPTMRSAFVDIISTRGFRGLY---AGLSPTLVEIIP 129
KVYP + S +D + +G++G+ GL T +IIP
Sbjct: 311 KVYPGISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIP 348
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 178 GTCAKLVCHPLDVVKKRFQIEGLQRHP--KYGARVEHRAYRNMSDAL------------- 222
G+C++LV D + + + E + +G RV H + ++DA
Sbjct: 23 GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQKPG 82
Query: 223 -SRIVQAEGWAGLYKGIVPSTVKAAP 247
SR+ E A +++ +VP +AAP
Sbjct: 83 ESRLDLLEKNADIFRELVPQITRAAP 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,695,833
Number of Sequences: 62578
Number of extensions: 294500
Number of successful extensions: 617
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 7
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)