Query 024391
Match_columns 268
No_of_seqs 133 out of 1696
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 2.4E-49 8.3E-54 330.7 21.4 240 2-263 54-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 8.7E-50 3E-54 334.1 17.1 235 2-265 51-288 (303)
3 1okc_A ADP, ATP carrier protei 100.0 1.9E-37 6.4E-42 258.8 16.4 193 57-264 4-202 (297)
4 2lck_A Mitochondrial uncouplin 100.0 9E-37 3.1E-41 255.2 14.9 182 63-265 4-194 (303)
5 3vjj_A P9-1; 3.00A {Rice black 39.0 11 0.00039 29.8 1.4 35 180-231 274-308 (368)
6 3tgu_G UQCRQ, mitochondrial ub 29.3 35 0.0012 21.6 2.2 37 230-266 33-69 (81)
7 1pp9_G Ubiquinol-cytochrome C 27.1 43 0.0015 21.2 2.4 37 230-266 33-69 (81)
8 1y9i_A Low temperature require 21.5 1.2E+02 0.004 22.3 4.1 48 30-77 111-159 (178)
9 3f2e_A SIRV coat protein; four 21.2 31 0.0011 21.4 0.8 34 213-246 6-43 (100)
10 3cx5_H Cytochrome B-C1 complex 20.6 69 0.0024 20.8 2.4 38 229-266 42-79 (93)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.4e-49 Score=330.68 Aligned_cols=240 Identities=25% Similarity=0.439 Sum_probs=204.1
Q ss_pred hHHHHHHHHhcCcccccccchhhhhhhcchhhHHHHHhHHHHHHHccCCCccccCChhHHHHHHHHHHHHHHHHHhcccH
Q 024391 2 FQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPF 81 (268)
Q Consensus 2 ~~~~~~i~~~eG~~~l~~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pl 81 (268)
++++++++++||++|||||+.+++++.++..+++|.+||.+++.+......++....+....+++|++|++++.++++|+
T Consensus 54 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pl 133 (297)
T 1okc_A 54 IDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPL 133 (297)
T ss_dssp HHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 68999999999999999999999999999999999999999995443221111112345778999999999999999999
Q ss_pred HHHHHHHhhcCC----CCCCCcHHHHHHHHHhhhCccccccchhHHHHhHhhhhhhHHHHHHHHHHHHhhhhhcccCCCC
Q 024391 82 DLLRTILASQGE----PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTS 157 (268)
Q Consensus 82 d~ik~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (268)
|++|+|+|++.. ...|++.++++++++++||++|||||+.+.+++++++.+++|.+||.+|+.+.+..
T Consensus 134 d~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-------- 205 (297)
T 1okc_A 134 DFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-------- 205 (297)
T ss_dssp HHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--------
T ss_pred HHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--------
Confidence 999999999843 35689999999999999999999999999999999999999999999998654321
Q ss_pred CCCCCCCcchHHHHHHHHHHhhhhhhhccchhHHHHHHHhcccCCCCCccccccccccCCHHHHHHHHHHhhchhhhccc
Q 024391 158 STGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKG 237 (268)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~v~~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gly~G 237 (268)
..+....+++|++||+++.++++|+|+||+|+|.+..... ....|+++++|+++|+++||++|||||
T Consensus 206 ------~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~-------~~~~y~~~~~~~~~i~~~eG~~glyrG 272 (297)
T 1okc_A 206 ------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKG-------ADIMYTGTVDCWRKIAKDEGPKAFFKG 272 (297)
T ss_dssp ------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCG-------GGCSCSSHHHHHHHHHHHHCGGGGGTT
T ss_pred ------CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCC-------CCCCCCCHHHHHHHHHHHcCcCeEecc
Confidence 2356778899999999999999999999999999753211 134689999999999999999999999
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHH
Q 024391 238 IVPSTVKAAPAGAVTFVAYEYASDWL 263 (268)
Q Consensus 238 ~~~~~~~~~~~~~i~~~~ye~~~~~l 263 (268)
+.++++|. +..+++|.+||.+|+++
T Consensus 273 ~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 273 AWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999996 57899999999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.7e-50 Score=334.14 Aligned_cols=235 Identities=23% Similarity=0.375 Sum_probs=211.9
Q ss_pred hHHHHHHHHhcCcccccccchhhhhhhcchhhHHHHHhHHHHHHHccCCCccccCChhHHHHHHHHHHHHHHHHHhcccH
Q 024391 2 FQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPF 81 (268)
Q Consensus 2 ~~~~~~i~~~eG~~~l~~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pl 81 (268)
++++++|+++||+++||||+.+++++.++..+++|.+||.+++.+.+... ..+....+++|++|++++.++++|+
T Consensus 51 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~-----~~~~~~~~~ag~~ag~~~~~~~~Pl 125 (303)
T 2lck_A 51 LGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE-----HAGIGSRLLAGSTTGALAVAVAQPT 125 (303)
T ss_dssp HHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS-----SCCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----CCcHHHHHHHHHHHHHHHHHHcCcH
Confidence 68899999999999999999999999999999999999999998875421 2456788999999999999999999
Q ss_pred HHHHHHHhhcCC---CCCCCcHHHHHHHHHhhhCccccccchhHHHHhHhhhhhhHHHHHHHHHHHHhhhhhcccCCCCC
Q 024391 82 DLLRTILASQGE---PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSS 158 (268)
Q Consensus 82 d~ik~r~q~~~~---~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (268)
|++|+|+|++.. ...|++.++++++++++||++|||||+.+.+++.+++.+++|.+||.+|+.+.+..
T Consensus 126 d~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--------- 196 (303)
T 2lck_A 126 DVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--------- 196 (303)
T ss_dssp HHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT---------
T ss_pred HHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 999999999853 35789999999999999999999999999999999999999999999998875431
Q ss_pred CCCCCCcchHHHHHHHHHHhhhhhhhccchhHHHHHHHhcccCCCCCccccccccccCCHHHHHHHHHHhhchhhhccch
Q 024391 159 TGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGI 238 (268)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~v~~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gly~G~ 238 (268)
....+....+++|++||+++.++++|+|+||+|+|.+. ...|+++++|+++|+++||++|||||+
T Consensus 197 ---~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~------------~~~y~~~~~~~~~i~~~eG~~glyrG~ 261 (303)
T 2lck_A 197 ---LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA------------LGQYHSAGHCALTMLRKEGPRAFYKGF 261 (303)
T ss_dssp ---SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------------SSSCCSHHHHHHHHHHSSCTHHHHSCC
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc------------ccccCCHHHHHHHHHHHcChHHhhccH
Confidence 11345667899999999999999999999999999986 235899999999999999999999999
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHh
Q 024391 239 VPSTVKAAPAGAVTFVAYEYASDWLES 265 (268)
Q Consensus 239 ~~~~~~~~~~~~i~~~~ye~~~~~l~~ 265 (268)
.++++|.+|..+++|.+||.+|+.+.+
T Consensus 262 ~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 262 MPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976643
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.9e-37 Score=258.76 Aligned_cols=193 Identities=21% Similarity=0.317 Sum_probs=165.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcCC------CCCCCcHHHHHHHHHhhhCccccccchhHHHHhHhhh
Q 024391 57 NLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGE------PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPY 130 (268)
Q Consensus 57 ~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~ 130 (268)
..+.+..+++|++|++++.++++|+|++|+|+|++.. ...|++..+++++++++||++|||||+.+++++.+++
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 4566788999999999999999999999999999842 2468999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcchHHHHHHHHHHhhhhhhhccchhHHHHHHHhcccCCCCCccccc
Q 024391 131 AGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARV 210 (268)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~v~~r~q~~~~~~~~~~~~~~ 210 (268)
.+++|.+||.+|+.+..... . ..+........+++|++||+++.++++|+|+||+|+|++.....
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~----~----~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~------- 148 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVD----R----HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA------- 148 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC----T----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSST-------
T ss_pred HHHHHHHHHHHHHHhccccC----c----ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCC-------
Confidence 99999999999986543210 0 00001234667899999999999999999999999999863211
Q ss_pred cccccCCHHHHHHHHHHhhchhhhccchhhhhhhcccchhHHHHHHHHHHHHHH
Q 024391 211 EHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLE 264 (268)
Q Consensus 211 ~~~~~~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~i~~~~ye~~~~~l~ 264 (268)
....|+++++|+++|+++||++|||||+.+++++.+|..+++|.+||.+++.+.
T Consensus 149 ~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 149 AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp TTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 124689999999999999999999999999999999999999999999998764
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=9e-37 Score=255.22 Aligned_cols=182 Identities=28% Similarity=0.481 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhhcCC---------CCCCCcHHHHHHHHHhhhCccccccchhHHHHhHhhhhhh
Q 024391 63 SYVSGALAGCAATVGSYPFDLLRTILASQGE---------PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGL 133 (268)
Q Consensus 63 ~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~---------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~ 133 (268)
.+++|++|++++.++++|+|++|+|+|++.. ...|++.++++++++++||++|||||+.+++++.+++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999854 3468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCCCCCCCCcchHHHHHHHHHHhhhhhhhccchhHHHHHHHhcccCCCCCcccccccc
Q 024391 134 QFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHR 213 (268)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~v~~r~q~~~~~~~~~~~~~~~~~ 213 (268)
+|.+||.+|+.+.+.. ...+....+++|++||+++.++++|+|+||+|+|++..... ..
T Consensus 84 ~f~~ye~~k~~~~~~~-------------~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~--------~~ 142 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS-------------EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGG--------GR 142 (303)
T ss_dssp TTTHHHHHHHHHSCCC-------------SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCC--------SS
T ss_pred HHHHHHHHHHHHhcCC-------------cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCC--------CC
Confidence 9999999999875420 02456788999999999999999999999999999863211 23
Q ss_pred ccCCHHHHHHHHHHhhchhhhccchhhhhhhcccchhHHHHHHHHHHHHHHh
Q 024391 214 AYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLES 265 (268)
Q Consensus 214 ~~~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~i~~~~ye~~~~~l~~ 265 (268)
.|+++++|+++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+
T Consensus 143 ~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~ 194 (303)
T 2lck_A 143 RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194 (303)
T ss_dssp SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999998754
No 5
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=39.05 E-value=11 Score=29.76 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=25.8
Q ss_pred hhhhhccchhHHHHHHHhcccCCCCCccccccccccCCHHHHHHHHHHhhch
Q 024391 180 CAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGW 231 (268)
Q Consensus 180 ~~~~~~~P~d~v~~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~ 231 (268)
++++=-||||.+|-.++..- +....+++.++++|+
T Consensus 274 LaTFdnypfdllRfqL~Sli-----------------stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSLI-----------------STPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSCC-----------------CCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhhc-----------------cChHHHHHHHHhcCc
Confidence 45566799999877666543 555778889999885
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=29.25 E-value=35 Score=21.61 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=27.8
Q ss_pred chhhhccchhhhhhhcccchhHHHHHHHHHHHHHHhh
Q 024391 230 GWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESI 266 (268)
Q Consensus 230 G~~gly~G~~~~~~~~~~~~~i~~~~ye~~~~~l~~~ 266 (268)
|+--.+|-+...++..+|..++.+.+|++.++..+..
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566678889999999999999988776543
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=27.14 E-value=43 Score=21.18 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=28.8
Q ss_pred chhhhccchhhhhhhcccchhHHHHHHHHHHHHHHhh
Q 024391 230 GWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESI 266 (268)
Q Consensus 230 G~~gly~G~~~~~~~~~~~~~i~~~~ye~~~~~l~~~ 266 (268)
|+-..+|-+...++..+|..++.+.+|++.++..+..
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~ 69 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKS 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHH
Confidence 5555666677777888999999999999988776544
No 8
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=21.49 E-value=1.2e+02 Score=22.35 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=28.2
Q ss_pred chhhHHHHHhHHHHHHHcc-CCCccccCChhHHHHHHHHHHHHHHHHHh
Q 024391 30 PYTAIQFTVLHKLKTFAAG-SSKAENHINLSAYLSYVSGALAGCAATVG 77 (268)
Q Consensus 30 ~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~a~~~~~~~ 77 (268)
...++.|..|+..|...-. -+.............+++|+.|++++.++
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 5666777777777653322 11111223455677788888888876433
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=21.19 E-value=31 Score=21.41 Aligned_cols=34 Identities=15% Similarity=0.364 Sum_probs=24.5
Q ss_pred cccCCHHHHHHHHHHhhch----hhhccchhhhhhhcc
Q 024391 213 RAYRNMSDALSRIVQAEGW----AGLYKGIVPSTVKAA 246 (268)
Q Consensus 213 ~~~~~~~~~~~~i~~~eG~----~gly~G~~~~~~~~~ 246 (268)
+++.+.-.-+..++.+.|+ +.+|.|++..+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 5677777777888888887 678999887766543
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=20.57 E-value=69 Score=20.82 Aligned_cols=38 Identities=3% Similarity=0.085 Sum_probs=30.3
Q ss_pred hchhhhccchhhhhhhcccchhHHHHHHHHHHHHHHhh
Q 024391 229 EGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESI 266 (268)
Q Consensus 229 eG~~gly~G~~~~~~~~~~~~~i~~~~ye~~~~~l~~~ 266 (268)
.|+-..+|-+...++..+|..++.+.+|++.++..+..
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 46666777777788888999999999999888766543
Done!