BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024393
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 4 GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGV 57
GY V LA+GLDI+L V ++ G +V T +TF+ DAV+ +PLGV
Sbjct: 399 GYSCVPVALAEGLDIKLNTAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 58 LKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS 114
LK + ++F P LP+WK +A+ +G G NK+++ FD+VFW P+V G V T+
Sbjct: 459 LKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRG 518
Query: 115 ---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQY 169
F NL+KA +L+ + AG+ A +E +SD+ LK I ++ P +
Sbjct: 519 ELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKET 575
Query: 170 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMS 216
+VS W D + GSYSY G S + Y+ + P+ LFFAGE T +
Sbjct: 576 VVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRN 635
Query: 217 YPGSVHGAFSTGLMAA 232
YP +VHGA +GL A
Sbjct: 636 YPATVHGALLSGLREA 651
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 4 GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGV 57
GY V LA+GLDI+L V ++ G +V T +TF+ DAV+ +PLGV
Sbjct: 399 GYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 58 LKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS 114
LK + ++F P LP+WK +A+ +G G NK+++ FD+VFW P+V G V T+
Sbjct: 459 LKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRG 518
Query: 115 ---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQY 169
F NL+KA +L+ + AG+ A +E +SD+ LK I ++ P +
Sbjct: 519 ELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKET 575
Query: 170 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMS 216
+VS W D + GSYSY G S + Y+ + P+ LFFAGE T +
Sbjct: 576 VVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRN 635
Query: 217 YPGSVHGAFSTGLMAA 232
YP +VHGA +GL A
Sbjct: 636 YPATVHGALLSGLREA 651
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 4 GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGV 57
GY V LA+GLDI+L V ++ G +V T +TF+ DAV+ +PLGV
Sbjct: 400 GYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 459
Query: 58 LKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS 114
LK + ++F P LP+WK +A+ +G G NK+++ FD+VFW P+V G V T+
Sbjct: 460 LKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRG 519
Query: 115 ---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQY 169
F NL+KA +L+ + AG+ A +E +SD+ LK I ++ P +
Sbjct: 520 ELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKET 576
Query: 170 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMS 216
+VS W D + GSYSY G S + Y+ + P+ LFFAGE T +
Sbjct: 577 VVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRN 636
Query: 217 YPGSVHGAFSTGLMAA 232
YP +VHGA +GL A
Sbjct: 637 YPATVHGALLSGLREA 652
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 4 GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGV 57
GY V LA+GLDI+L V ++ G +V T +TF+ DAV+ +PLGV
Sbjct: 399 GYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 58 LKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS 114
LK + ++F P LP+WK +A+ +G G NK+++ FD+VFW P+V G V T+
Sbjct: 459 LKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRG 518
Query: 115 ---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQY 169
F NL+KA +L+ + AG+ A +E +SD+ LK I ++ P +
Sbjct: 519 ELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKET 575
Query: 170 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMS 216
+VS W D + GSYSY G S + Y+ + P+ LFFAGE T +
Sbjct: 576 VVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRN 635
Query: 217 YPGSVHGAFSTGLMAA 232
YP +VHGA +GL A
Sbjct: 636 YPATVHGALLSGLREA 651
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 4 GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGV 57
GY V LA+GLDI+L V ++ G +V T +TF+ DAV+ +PLGV
Sbjct: 399 GYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 58 LKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS 114
LK + ++F P LP+WK +A+ +G G NK+++ FD+VFW P+V G V T+
Sbjct: 459 LKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRG 518
Query: 115 ---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQY 169
F NL+KA +L+ + AG+ A +E +SD+ LK I ++ P +
Sbjct: 519 ELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKET 575
Query: 170 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMS 216
+VS W D + GSYSY G S + Y+ + P+ LFFAGE T +
Sbjct: 576 VVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRN 635
Query: 217 YPGSVHGAFSTGLMAA 232
YP +VHGA +GL A
Sbjct: 636 YPATVHGALLSGLREA 651
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 130 bits (327), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 4 GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGV 57
GY V LA+GLDI+L V ++ G +V T +TF+ DAV+ +PLGV
Sbjct: 448 GYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 507
Query: 58 LKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS 114
LK + ++F P LP+WK +A+ +G G NK+++ FD+VFW P+V G V T+
Sbjct: 508 LKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRG 567
Query: 115 ---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQY 169
F NL+KA +L+ + AG+ A +E +SD+ LK I ++ P +
Sbjct: 568 ELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKET 624
Query: 170 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMS 216
+VS W D + GSYSY G S + Y+ + P+ LFFAGE T +
Sbjct: 625 VVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRN 684
Query: 217 YPGSVHGAFSTGLMAA 232
YP +VHGA +GL A
Sbjct: 685 YPATVHGALLSGLREA 700
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 130 bits (327), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 4 GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGV 57
GY V LA+GLDI+L V ++ G +V T +TF+ DAV+ +PLGV
Sbjct: 452 GYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 511
Query: 58 LKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS 114
LK + ++F P LP+WK +A+ +G G NK+++ FD+VFW P+V G V T+
Sbjct: 512 LKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRG 571
Query: 115 ---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQY 169
F NL+KA +L+ + AG+ A +E +SD+ LK I ++ P +
Sbjct: 572 ELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKET 628
Query: 170 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMS 216
+VS W D + GSYSY G S + Y+ + P+ LFFAGE T +
Sbjct: 629 VVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRN 688
Query: 217 YPGSVHGAFSTGLMAA 232
YP +VHGA +GL A
Sbjct: 689 YPATVHGALLSGLREA 704
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 130 bits (326), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Query: 4 GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGV 57
GY V LA+GLDI+L V ++ G +V T +TF+ DAV+ +PLGV
Sbjct: 570 GYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 629
Query: 58 LKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS 114
LK + ++F P LP+WK +A+ +G G NK+++ FD+VFW P+V G V T+
Sbjct: 630 LKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRG 689
Query: 115 ---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQY 169
F NL+KA +L+ + AG+ A +E +SD+ LK I ++ P +
Sbjct: 690 ELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKET 746
Query: 170 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMS 216
+VS W D + GSYSY G S + Y+ + P+ LFFAGE T +
Sbjct: 747 VVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRN 806
Query: 217 YPGSVHGAFSTGLMAA 232
YP +VHGA +GL A
Sbjct: 807 YPATVHGALLSGLREA 822
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 15/252 (5%)
Query: 5 YLPVINTLAKGLDIRLGHRVTKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKA 60
YL + K +D RL ++ K+ R GV V E + AD V+V+ LGVL++
Sbjct: 216 YLKTDDKSGKIVDPRL--QLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQS 273
Query: 61 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYF 116
I+F+P+LP WK AI + + KI + F + FWP + FL S Y +
Sbjct: 274 DLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQ 333
Query: 117 LNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHW 174
+ VL+ + +R IE+ SDE L+K+ P D LV W
Sbjct: 334 EFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRW 393
Query: 175 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE- 233
+D G++S VG + Y++LR PV ++F GE TS Y G VHGA+ +G+ +AE
Sbjct: 394 WSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEI 453
Query: 234 --DCRMRVLERY 243
+C + + +Y
Sbjct: 454 LINCAQKKMCKY 465
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 15/252 (5%)
Query: 5 YLPVINTLAKGLDIRLGHRVTKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKA 60
YL + K +D RL ++ K+ R GV V E + AD V+V+ LGVL++
Sbjct: 216 YLKTDDKSGKIVDPRL--QLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQS 273
Query: 61 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYF 116
I+F+P+LP WK AI + + I + F + FWP + FL S Y +
Sbjct: 274 DLIQFKPKLPTWKVRAIYQFDMAVYTMIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQ 333
Query: 117 LNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHW 174
+ VL+ + +R IE+ SDE L+K+ P D LV W
Sbjct: 334 EFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRW 393
Query: 175 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE- 233
+D G++S VG + Y++LR PV ++F GE TS Y G VHGA+ +G+ +AE
Sbjct: 394 WSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEI 453
Query: 234 --DCRMRVLERY 243
+C + + +Y
Sbjct: 454 LINCAQKKMCKY 465
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 10/242 (4%)
Query: 1 MVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 60
+ GY +I LA+GLDI+L V I V+VT G + A V+V VPL +L+
Sbjct: 549 LTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQK 608
Query: 61 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN----VEFLGVV--SDTSYGC- 113
I+F P L + K AI+ LG GI KI + F FW + +F G V S + G
Sbjct: 609 GAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLF 668
Query: 114 SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLV 171
+ F ++ H VL+ + AG+ + + D+ L+++ + P +Y V
Sbjct: 669 AVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFV 728
Query: 172 SHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLFFAGEATSMSYPGSVHGAFSTGLM 230
+ W TD +YS+ G S + Y+ + + +FFAGEAT+ +P +V GA+ +G+
Sbjct: 729 TRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVR 788
Query: 231 AA 232
A
Sbjct: 789 EA 790
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 10/242 (4%)
Query: 1 MVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 60
+ GY +I LA+GLDI+L V I V+VT G + A V+V VPL +L+
Sbjct: 529 LTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQK 588
Query: 61 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN----VEFLGVV--SDTSYGC- 113
I+F P L + K AI+ LG GI KI + F FW + +F G V S + G
Sbjct: 589 GAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLF 648
Query: 114 SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLV 171
+ F ++ H VL+ + AG+ + + D+ L+++ + P +Y V
Sbjct: 649 AVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFV 708
Query: 172 SHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLFFAGEATSMSYPGSVHGAFSTGLM 230
+ W TD +YS+ G S + Y+ + + +FFAGEAT+ +P +V GA+ +G+
Sbjct: 709 TRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVR 768
Query: 231 AA 232
A
Sbjct: 769 EA 770
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 119/239 (49%), Gaps = 10/239 (4%)
Query: 4 GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTI 63
GY +I LA+GLDI+L V I V+VT G + A V+V VPL +L+ I
Sbjct: 540 GYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAI 599
Query: 64 KFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN----VEFLGVV--SDTSYGC-SYF 116
+F P L + K AI+ LG GI KI + F FW + +F G V S + G + F
Sbjct: 600 QFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVF 659
Query: 117 LNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHW 174
++ H VL+ + AG+ + + D+ L+++ + P +Y V+ W
Sbjct: 660 YDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRW 719
Query: 175 GTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMAA 232
TD +YS+ G S + Y+ + + +FFAGEAT+ +P +V GA+ +G+ A
Sbjct: 720 STDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREA 778
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 115/308 (37%), Gaps = 86/308 (27%)
Query: 4 GYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLK 59
Y V+ +A+ ++L V ITR V V E G + AD V++ VP VL
Sbjct: 200 NYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLN 259
Query: 60 ART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV---------- 100
I+F+P L + A D + G K+I F++ W N
Sbjct: 260 LSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANS 319
Query: 101 --EFLGVVSD-------------------TSYGCS----YFLNLHKATGHCVLVYMPAGQ 135
EF+ +V + TS C +F+NL K+TG + +
Sbjct: 320 TNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAP 379
Query: 136 LARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ------------YLVSH 173
L IE + ++ F+F Q L KI+ D PI+ +VS+
Sbjct: 380 LTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSN 439
Query: 174 WGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGA 224
W D S G+YS V S+ R+R FAGE T M G +GA
Sbjct: 440 WTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAGEHTIMDGAGCAYGA 492
Query: 225 FSTGLMAA 232
+ +G A
Sbjct: 493 WESGRREA 500
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 115/308 (37%), Gaps = 86/308 (27%)
Query: 4 GYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLK 59
Y V+ +A+ ++L V ITR V V E G + AD V++ VP VL
Sbjct: 200 NYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLN 259
Query: 60 ART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV---------- 100
I+F+P L + A D + G K+I F++ W N
Sbjct: 260 LSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANS 319
Query: 101 --EFLGVVSD-------------------TSYGCS----YFLNLHKATGHCVLVYMPAGQ 135
EF+ +V + TS C +F+NL K+TG + +
Sbjct: 320 TNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAP 379
Query: 136 LARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ------------YLVSH 173
L IE + ++ F+F Q L KI+ D PI+ +VS+
Sbjct: 380 LTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSN 439
Query: 174 WGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGA 224
W D S G+YS V S+ R+R FAGE T M G +GA
Sbjct: 440 WTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAGEHTIMDGAGCAYGA 492
Query: 225 FSTGLMAA 232
+ +G A
Sbjct: 493 WESGRREA 500
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 115/308 (37%), Gaps = 86/308 (27%)
Query: 4 GYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLK 59
Y V+ +A+ ++L V ITR V V E G + AD V++ VP VL
Sbjct: 200 NYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLN 259
Query: 60 ART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV---------- 100
I+F+P L + A D + G K+I F++ W N
Sbjct: 260 LSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANS 319
Query: 101 --EFLGVVSD-------------------TSYGCS----YFLNLHKATGHCVLVYMPAGQ 135
EF+ +V + TS C +F+NL K+TG + +
Sbjct: 320 TNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAP 379
Query: 136 LARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ------------YLVSH 173
L IE + ++ F+F Q L KI+ D PI+ +VS+
Sbjct: 380 LTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSN 439
Query: 174 WGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGA 224
W D S G+YS V S+ R+R FAGE T M G +GA
Sbjct: 440 WTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAGEHTIMDGAGCAYGA 492
Query: 225 FSTGLMAA 232
+ +G A
Sbjct: 493 WESGRREA 500
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 115/308 (37%), Gaps = 86/308 (27%)
Query: 4 GYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLK 59
Y V+ +A+ ++L V ITR V V E G + AD V++ VP VL
Sbjct: 200 NYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLN 259
Query: 60 ART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV---------- 100
I+F+P L + A D + G K+I F++ W N
Sbjct: 260 LSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANS 319
Query: 101 --EFLGVVSD-------------------TSYGCS----YFLNLHKATGHCVLVYMPAGQ 135
EF+ +V + TS C +F+NL K+TG + +
Sbjct: 320 TNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAP 379
Query: 136 LARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ------------YLVSH 173
L IE + ++ F+F Q L KI+ D PI+ +VS+
Sbjct: 380 LTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSN 439
Query: 174 WGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGA 224
W D S G+YS V S+ R+R FAGE T M G +GA
Sbjct: 440 WTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAGEHTIMDGAGCAYGA 492
Query: 225 FSTGLMAA 232
+ +G A
Sbjct: 493 WESGRREA 500
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 10/227 (4%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 74
G ++L H VT + + + + + + V+ A+P L A+ I F P LP +
Sbjct: 235 GDQVKLNHPVTHVDQSSDNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERN 292
Query: 75 AAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVY 130
I L +G K +M++ + FW ++ G ++ D S L+ K G ++ +
Sbjct: 293 QLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGF 352
Query: 131 MPAGQLARDIEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YD 187
+ A + R + K+ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 353 ILARKADR-LAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYF 411
Query: 188 TVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 234
G +R PV +FFAG T+ + G + GA G AA +
Sbjct: 412 PPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAARE 458
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 10/227 (4%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 74
G ++L H VT + + + + + + V+ A+P L A+ I F P LP +
Sbjct: 224 GDQVKLNHPVTHVDQSSDNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERN 281
Query: 75 AAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVY 130
I L +G K +M++ + FW ++ G ++ D S L+ K G ++ +
Sbjct: 282 QLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGF 341
Query: 131 MPAGQLARDIEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YD 187
+ A + R + K+ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 ILARKADR-LAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYF 400
Query: 188 TVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 234
G +R PV +FFAG T+ + G + GA G AA +
Sbjct: 401 PPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAARE 447
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 10/227 (4%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 74
G ++L H VT + + + + + + V+ A+P L A+ I F P LP +
Sbjct: 224 GDQVKLNHPVTHVDQSSDNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERN 281
Query: 75 AAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVY 130
I L +G K +M++ + FW ++ G ++ D S L+ K G ++ +
Sbjct: 282 QLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGF 341
Query: 131 MPAGQLARDIEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YD 187
+ A + R + K+ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 ILARKADR-LAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYF 400
Query: 188 TVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 234
G +R PV +FFAG T+ + G + GA G AA +
Sbjct: 401 PPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAARE 447
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 114/308 (37%), Gaps = 86/308 (27%)
Query: 4 GYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLK 59
Y V+ +A+ ++L V ITR V V E G + AD V++ VP VL
Sbjct: 200 NYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLN 259
Query: 60 ART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV---------- 100
I+F+P L + A D + G K+I F++ W N
Sbjct: 260 LSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANS 319
Query: 101 --EFLGVVSD-------------------TSYGCS----YFLNLHKATGHCVLVYMPAGQ 135
EF+ +V + TS C +F+NL K+TG +
Sbjct: 320 TNEFVEIVRNAENLDELDSXLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFXXLXQAP 379
Query: 136 LARDIEKMSDEAAANFAFTQ--LKKI------------------LPDASSPI--QYLVSH 173
L IE + ++ F+F Q L KI + +A+ P+ +VS+
Sbjct: 380 LTNHIESIREDKERLFSFFQPVLNKIXKCLDSEDVIDGXRPIENIANANKPVLRNIIVSN 439
Query: 174 WGTDANSLGSYSY---------DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGA 224
W D S G+YS V S+ R+R FAGE T G +GA
Sbjct: 440 WTRDPYSRGAYSACFPGDDPVDXVVAXSNGQDSRIR-------FAGEHTIXDGAGCAYGA 492
Query: 225 FSTGLMAA 232
+ +G A
Sbjct: 493 WESGRREA 500
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 14/228 (6%)
Query: 18 IRLGHRVTKITRHYIGVKVTVE----GGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 73
++ RV KI ++ V VT + + AD V+V AR I+FEP LP K
Sbjct: 255 VKFNARVIKIQQNANQVTVTYQTPEKDTSSNTADYVIVCTTSRA--ARRIQFEPPLPPKK 312
Query: 74 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYM 131
+ A+ + KI + FW + G S T Y+ N + +TG V++
Sbjct: 313 QHALRSVHYRSGTKIFLTCSSKFWEDDGIHGGKSTTDLPSRFIYYPNHNFSTGVGVIIAY 372
Query: 132 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSY 186
G A + + + A+ F L I IQ ++ W D ++G+ +
Sbjct: 373 GIGDDANFFQALKFKDCADIVFNDLSLIHQLPKEEIQSFCYPSMIQKWSLDKYAMGAITT 432
Query: 187 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 234
T + E L P +FFAGE T+ ++ G + +GL AA D
Sbjct: 433 FTPYQFQRFSEALTAPQGRIFFAGEYTAEAH-GWIDSTIKSGLTAARD 479
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 107/256 (41%), Gaps = 16/256 (6%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 72
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 281
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 129
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 341
Query: 130 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 186
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 401
Query: 187 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGEL 246
G LR PVD ++FAG T+ + G + GA G AA + +L G++
Sbjct: 402 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGHMEGAVEAGERAARE----ILHAMGKI 457
Query: 247 DLFQPVMGEETPISVP 262
+ E + VP
Sbjct: 458 PEDEIWQSEPESVDVP 473
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 107/256 (41%), Gaps = 16/256 (6%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 72
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 281
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 129
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 341
Query: 130 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 186
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 401
Query: 187 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGEL 246
G LR PVD ++FAG T+ + G + GA G AA + +L G++
Sbjct: 402 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE----ILHAMGKI 457
Query: 247 DLFQPVMGEETPISVP 262
+ E + VP
Sbjct: 458 PEDEIWQSEPESVDVP 473
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 107/256 (41%), Gaps = 16/256 (6%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 72
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 281
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 129
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 341
Query: 130 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 186
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 401
Query: 187 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGEL 246
G LR PVD ++FAG T+ + G + GA G AA + +L G++
Sbjct: 402 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE----ILHAMGKI 457
Query: 247 DLFQPVMGEETPISVP 262
+ E + VP
Sbjct: 458 PEDEIWQSEPESVDVP 473
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 107/256 (41%), Gaps = 16/256 (6%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 72
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 281
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 129
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 341
Query: 130 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 186
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 401
Query: 187 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGEL 246
G LR PVD ++FAG T+ + G + GA G AA + +L G++
Sbjct: 402 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE----ILHAMGKI 457
Query: 247 DLFQPVMGEETPISVP 262
+ E + VP
Sbjct: 458 PEDEIWQSEPESVDVP 473
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 107/256 (41%), Gaps = 16/256 (6%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 72
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 225 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 280
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 129
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 281 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 340
Query: 130 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 186
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 341 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 400
Query: 187 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGEL 246
G LR PVD ++FAG T+ + G + GA G AA + +L G++
Sbjct: 401 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE----ILHAMGKI 456
Query: 247 DLFQPVMGEETPISVP 262
+ E + VP
Sbjct: 457 PEDEIWQSEPESVDVP 472
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 107/256 (41%), Gaps = 16/256 (6%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 72
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 281
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 129
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 341
Query: 130 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 186
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 401
Query: 187 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGEL 246
G LR PVD ++FAG T+ + G + GA G AA + +L G++
Sbjct: 402 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGWMEGAVEAGERAARE----ILHAMGKI 457
Query: 247 DLFQPVMGEETPISVP 262
+ E + VP
Sbjct: 458 PEDEIWQSEPESVDVP 473
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 107/256 (41%), Gaps = 16/256 (6%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 72
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 281
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 129
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 341
Query: 130 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 186
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 401
Query: 187 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGEL 246
G LR PVD ++FAG T+ + G + GA G AA + +L G++
Sbjct: 402 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGFMEGAVEAGERAARE----ILHAMGKI 457
Query: 247 DLFQPVMGEETPISVP 262
+ E + VP
Sbjct: 458 PEDEIWQSEPESVDVP 473
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 107/256 (41%), Gaps = 16/256 (6%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 72
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 281
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 129
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 341
Query: 130 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 186
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 401
Query: 187 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGEL 246
G LR PVD ++FAG T+ + G + GA G AA + +L G++
Sbjct: 402 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGLMEGAVEAGERAARE----ILHAMGKI 457
Query: 247 DLFQPVMGEETPISVP 262
+ E + VP
Sbjct: 458 PEDEIWQSEPESVDVP 473
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 87/223 (39%), Gaps = 13/223 (5%)
Query: 6 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKAR 61
LP A + L RV KI + V VT + + + AD V+V AR
Sbjct: 256 LPTSMYQAIQEKVHLNARVIKIQQDVKEVTVTYQTSEKETLSVTADYVIVCTTSRA--AR 313
Query: 62 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNL 119
IKFEP LP K A+ + KI + K FW + G S T Y+ N
Sbjct: 314 RIKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDDGIHGGKSTTDLPSRFIYYPNH 373
Query: 120 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQ-----YLVSHW 174
+ G V++ G A E + E + L I IQ ++ W
Sbjct: 374 NFPNGVGVIIAYGIGDDANYFEALDFEDCGDIVINDLSLIHQLPKEEIQAICRPSMIQRW 433
Query: 175 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSY 217
D ++G + T + E L PVD ++FAGE T+ ++
Sbjct: 434 SLDKYAMGGITTFTPYQFQHFSEALTAPVDRIYFAGEYTAQAH 476
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 16/256 (6%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 72
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 225 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 280
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 129
+ I + +G K I+++ + FW ++ G ++ + L+ K G + ++
Sbjct: 281 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAATLDDTKPEGNYAAIM 340
Query: 130 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 186
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 341 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 400
Query: 187 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGEL 246
G LR PVD ++FAG T+ + G + GA G AA + +L G++
Sbjct: 401 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE----ILHAMGKI 456
Query: 247 DLFQPVMGEETPISVP 262
+ E + VP
Sbjct: 457 PEDEIWQSEPESVDVP 472
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 10/227 (4%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 74
G ++L VT I + + V + + V+ A+P +L A+ I F+P LP +
Sbjct: 243 GDKVKLSSPVTYIDQTDDNIIVETLNHEHYECKYVISAIP-PILTAK-IHFKPELPPERN 300
Query: 75 AAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVY 130
I L +G K ++++ + FW ++ G ++ D + L+ K G ++ +
Sbjct: 301 QLIQRLPMGAVIKCMVYYKEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGF 360
Query: 131 MPAGQLARDIEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YD 187
+ A + R + K+ + K+L +A P+ Y +W + S G Y+ Y
Sbjct: 361 ILARKADR-LAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYF 419
Query: 188 TVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 234
G +R PV ++FAG T+ + G + GA G AA +
Sbjct: 420 PPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVEAGERAARE 466
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 94/240 (39%), Gaps = 14/240 (5%)
Query: 6 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKAR 61
LP A + L +V KI ++ V V + + AD V+V R
Sbjct: 243 LPTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRA--TR 300
Query: 62 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNL 119
IKFEP LP K A+ + KI + K FW + G S T Y+ N
Sbjct: 301 RIKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKSTTDLPSRFIYYPNH 360
Query: 120 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHW 174
+ +G V++ G A + + + A+ L I IQ ++ W
Sbjct: 361 NFTSGVGVIIAYGIGDDANFFQALDFKDCADIVINDLSLIHQLPREEIQTFCYPSMIQKW 420
Query: 175 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 234
D ++G + T + E L VD ++FAGE T+ ++ G + +GL AA D
Sbjct: 421 SLDKYAMGGITTFTPYQFQHFSESLTASVDRIYFAGEHTAEAH-GWIDSTIKSGLRAARD 479
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 15/234 (6%)
Query: 13 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 72
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS-----YFLNLHKATGHCV 127
+ +G+ K+ ++ FW G T +G S + N +
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 128 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 184
LV + + A + ++S E L + L P A P+ Y S WG++ + G Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYTA 397
Query: 185 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 238
S+D +G H R PV + F+ + G V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYGHVDGAVRMGQRTAADIIAR 450
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 17/216 (7%)
Query: 17 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 76
+IRL VT I + V VTV+ G F A +V+VA P+ R I F P LP+ + +
Sbjct: 219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSV 276
Query: 77 IDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL 136
I++ G KI++H + +E +G D + Y + ++ + +G
Sbjct: 277 IEEGHGGQGLKILIHV-RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSF 332
Query: 137 -ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL 195
DI + D A + +++ + D W D G + VG+ +
Sbjct: 333 DPTDIGAVKD--AVLYYLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRV 382
Query: 196 YERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 231
++ L P + F G S+ +PG + GA T A
Sbjct: 383 HKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECA 418
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 17/216 (7%)
Query: 17 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 76
+IRL VT I + V VTV+ G F A +V+VA P+ R I F P LP+ + +
Sbjct: 219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSV 276
Query: 77 IDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL 136
I++ G KI++H + +E +G D + Y + ++ + +G
Sbjct: 277 IEEGHGGQGLKILIHV-RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSF 332
Query: 137 -ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL 195
DI + D A + +++ + D W D G + VG+ +
Sbjct: 333 DPTDIGAVKD--AVLYYLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRV 382
Query: 196 YERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 231
++ L P + F G S+ +PG + GA T A
Sbjct: 383 HKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECA 418
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 91/234 (38%), Gaps = 15/234 (6%)
Query: 13 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 72
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS-----YFLNLHKATGHCV 127
+ +G+ K+ ++ FW G T +G S + N +
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 128 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 184
LV + + A + ++S E L + L P A P+ Y S WG++ + G+Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGAYAA 397
Query: 185 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 238
S+D +G H R PV + F+ + V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 90/234 (38%), Gaps = 15/234 (6%)
Query: 13 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 72
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS-----YFLNLHKATGHCV 127
+ +G+ K+ ++ FW G T +G S + N +
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 128 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 184
LV + + A + ++S E L + L P A P+ Y S WG++ + G Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAA 397
Query: 185 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 238
S+D +G H R PV + F+ + V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 90/234 (38%), Gaps = 15/234 (6%)
Query: 13 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 72
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 73 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS-----YFLNLHKATGHCV 127
+ +G+ K+ ++ FW G T +G S + N +
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 128 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 184
LV + + A + ++S E L + L P A P+ Y S WG++ + G Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAA 397
Query: 185 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 238
S+D +G H R PV + F+ + V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 14/231 (6%)
Query: 18 IRLGHRVTKITRHYIGVKVTVEG----GKTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 73
+ +V KI ++ V V E + AD V+V + R IKF P L K
Sbjct: 255 VHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV--RLIKFNPPLLPKK 312
Query: 74 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYM 131
A+ + KI + FW + G S T Y+ N + G V++
Sbjct: 313 AHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAY 372
Query: 132 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSY 186
G A + + + A+ F L I IQ ++ W D ++G +
Sbjct: 373 GIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITT 432
Query: 187 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237
T + + L ++FAGE T+ ++ G + +GL AA D +
Sbjct: 433 FTPYQFQHFSDPLTASQGRIYFAGEYTAQAH-GWIDSTIKSGLRAARDVNL 482
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 29/223 (13%)
Query: 20 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 79
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 80 LGVG--------IENKIIMHFDKVFWPNVEFLGVVSD--TSYGCSYFLNLHKATGHCVLV 129
V ++NK + + + +P + + D T G ++ + + H
Sbjct: 333 GHVSMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANHI--- 389
Query: 130 YMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 189
P + ++ + A F +L + +W D + G++ +
Sbjct: 390 -QPDEDVRETLKAVGQLAPGTFGVKRL-------------VFHNWVKDEFAKGAWFFSRP 435
Query: 190 GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 232
G + + LR + FA ++ + + GA G AA
Sbjct: 436 GMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 11/214 (5%)
Query: 20 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 79
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 80 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 139
V + K+ D + G+ + C + G+ LV G A
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 140 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDLYER 198
I+ D A QL + ++ LV H W D + G++ + G + +
Sbjct: 389 IQPDEDVRETLKAVGQLAP----GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQG 444
Query: 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 232
LR + FA ++ + + GA G AA
Sbjct: 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 11/214 (5%)
Query: 20 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 79
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 80 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 139
V + K+ D + G+ + C + G+ LV G A
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 140 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDLYER 198
I+ D A QL + ++ LV H W D + G++ + G + +
Sbjct: 389 IQPDEDVRETLKAVGQLAP----GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQG 444
Query: 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 232
LR + FA ++ + + GA G AA
Sbjct: 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 14 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAV 53
+GL IR G RVT + G +V +EGG+ AD V+VAV
Sbjct: 221 QGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAV 260
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 71/180 (39%), Gaps = 7/180 (3%)
Query: 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 74
G D+ L V I GV V E T A V++AVP + + F+P LP +
Sbjct: 228 GDDVVLNSPVRTIKWDENGVSVVSERA-TVNARFVIMAVPPNLYS--RVSFDPPLPRRQH 284
Query: 75 AAIDDLGVGIENKIIMHFDKVFWPNVEFLGV-VSDTSYGCSYFLNLHKATGHCVLVYMPA 133
+G+ K+ +D FW G S + + N + LV +
Sbjct: 285 QMHQHQSLGLVIKVHAVYDTPFWREEGLSGTGFSAGALVQEVYDNTNHGDSRGTLVGFVS 344
Query: 134 GQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSY--SYDTVG 190
+ A + ++S E + L D A +P Y S WG++ + G+Y SYD G
Sbjct: 345 DEKADAVFELSAEDRKKAILESIAGFLGDKALTPEVYYESDWGSEEWTRGAYASSYDLGG 404
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 14 KGLDIRLGHRVTKITRHYIGVKVT---VEGGKTFVADAVVVAVPLGVLKARTIKFEPRLP 70
+G+D +LG +VT + G KVT V+GG+ DA VV + G R P
Sbjct: 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATG-----------RKP 300
Query: 71 DWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVY 130
+ GV ++++ + D+ F ++ + + D G HKA V V
Sbjct: 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPXL---AHKAEDEGVAVA 357
Query: 131 -MPAGQ 135
+ AGQ
Sbjct: 358 EIIAGQ 363
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 10 NTLAKGLDIRLGHRVTKITRHYIG------VKVTVEGGKTFVADAVVVAV-PLGVLKART 62
N + +G DIRL RV +I G VK G ADAVV+A R
Sbjct: 264 NAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV 323
Query: 63 IKFEPRLPDWK 73
K++P+L +K
Sbjct: 324 SKYDPKLKGFK 334
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 10 NTLAKGLDIRLGHRVTKITRHYIG------VKVTVEGGKTFVADAVVVAV-PLGVLKART 62
N + +G DIRL RV +I G VK G ADAVV+A R
Sbjct: 264 NAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV 323
Query: 63 IKFEPRLPDWK 73
K++P+L +K
Sbjct: 324 SKYDPKLKGFK 334
>pdb|4FAI|A Chain A, Crystal Structure Of Mitochondrial Isoform Of Glutaminyl
Cyclase From Drosophila Melanogaster
pdb|4FAI|B Chain B, Crystal Structure Of Mitochondrial Isoform Of Glutaminyl
Cyclase From Drosophila Melanogaster
Length = 330
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 91 HFDKVFWPNVEFLGVVSDTSYGCSYFLNL 119
H+D + P VEFLG +D++ C+ LNL
Sbjct: 113 HYDSKYMPGVEFLG-ATDSAVPCAMLLNL 140
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 142 KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI 201
K+ A+ N + AS+ Q L+S WG +S SY D+ + L+
Sbjct: 89 KLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYP--------DVLKCLKA 140
Query: 202 PVDNLFFAGEATSMSYPGSV-HGAFSTGLMAAEDCR 236
P+ + + +YPG + F GL + C+
Sbjct: 141 PI----LSDSSCKSAYPGQITSNMFCAGLEGGDSCQ 172
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 20 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTI 63
LG R + R KVT G + A AV++A +G + R I
Sbjct: 84 LGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRI 127
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 7 PVI----NTLAKGLDIRLGHRVTKITRHYIGVKVTVEG 40
PVI N L KG+D+ GHRVT + Y+ V G
Sbjct: 5 PVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGG 42
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 32/245 (13%)
Query: 17 DIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 73
+I G VT + GV V G K+ AD + +P ++ + + LP
Sbjct: 253 NIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVG----RLQNNLPGDV 308
Query: 74 EAAIDDLGVGIENKIIMHFDKVFWPNVEFL-GVVSDTSYGCSYFL---NLHKATGHCVLV 129
A+ K+ + + + +W + + G S+T S + + + + V+
Sbjct: 309 LTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFPYDHYNSDRGVVVA 368
Query: 130 YMPAGQLARDIEKMSD-----EAAANFAFTQLKKILPDASSPI-------QYLVSHWGTD 177
Y +G+ E ++ +A A + +K D SS +Y S W
Sbjct: 369 YYSSGKRQEAFESLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAW--- 425
Query: 178 ANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237
AN GS + + YE+L PVD ++FAG+ S + HGA L +A D
Sbjct: 426 ANWAGSGGSHGGAATPE-YEKLLEPVDKIYFAGDHLSNAIAWQ-HGA----LTSARDVVT 479
Query: 238 RVLER 242
+ ER
Sbjct: 480 HIHER 484
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 131 MPAGQLAR-DIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 189
MPA ++R D + D + F K+LP AS S WG A+ G+ D
Sbjct: 337 MPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASDTKLSRFSSWGLTAD--GNIKPDIA 394
Query: 190 GKSHDLYERLRIPVDNLFFAGEATSMSYP 218
D+ L +N + TSMS P
Sbjct: 395 APGQDI---LSSVANNKYAKLSGTSMSAP 420
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,992,802
Number of Sequences: 62578
Number of extensions: 334167
Number of successful extensions: 888
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 762
Number of HSP's gapped (non-prelim): 68
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)