Query 024393
Match_columns 268
No_of_seqs 124 out of 1234
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02268 probable polyamine ox 100.0 5.6E-37 1.2E-41 270.4 28.1 239 1-239 196-434 (435)
2 PLN03000 amine oxidase 100.0 4.4E-36 9.5E-41 274.3 27.2 241 1-242 376-626 (881)
3 PLN02976 amine oxidase 100.0 2.5E-35 5.5E-40 276.2 26.9 241 1-241 931-1188(1713)
4 PLN02676 polyamine oxidase 100.0 4.3E-35 9.4E-40 259.8 25.9 240 2-241 220-475 (487)
5 PLN02328 lysine-specific histo 100.0 1.3E-34 2.8E-39 264.7 26.5 242 1-243 432-683 (808)
6 PLN02529 lysine-specific histo 100.0 2.2E-34 4.7E-39 262.2 27.6 242 1-243 352-602 (738)
7 PLN02568 polyamine oxidase 100.0 5.4E-32 1.2E-36 241.8 27.0 239 1-239 237-535 (539)
8 COG1231 Monoamine oxidase [Ami 100.0 5.2E-33 1.1E-37 234.2 18.7 237 2-240 205-448 (450)
9 KOG0029 Amine oxidase [Seconda 100.0 5E-30 1.1E-34 225.6 24.2 248 1-248 214-470 (501)
10 PF01593 Amino_oxidase: Flavin 100.0 3.8E-29 8.1E-34 219.9 21.5 232 3-236 209-450 (450)
11 TIGR00562 proto_IX_ox protopor 99.9 1.6E-24 3.5E-29 192.7 21.7 226 1-239 220-460 (462)
12 KOG0685 Flavin-containing amin 99.9 1.8E-24 3.9E-29 182.8 17.7 238 3-242 220-494 (498)
13 TIGR03467 HpnE squalene-associ 99.9 7.4E-24 1.6E-28 186.1 20.2 217 2-236 192-418 (419)
14 PRK12416 protoporphyrinogen ox 99.9 2.6E-23 5.7E-28 184.9 22.3 224 1-239 221-461 (463)
15 PRK11883 protoporphyrinogen ox 99.9 1.9E-22 4.1E-27 178.9 22.8 221 1-237 216-450 (451)
16 PLN02576 protoporphyrinogen ox 99.9 2.9E-22 6.2E-27 179.8 22.4 226 1-240 234-488 (496)
17 PLN02612 phytoene desaturase 99.9 6.5E-22 1.4E-26 178.9 21.2 226 6-241 308-550 (567)
18 TIGR02731 phytoene_desat phyto 99.9 9E-22 2E-26 174.6 20.3 219 5-236 212-453 (453)
19 PRK07233 hypothetical protein; 99.9 2.1E-21 4.7E-26 171.3 19.7 225 1-240 193-432 (434)
20 COG3380 Predicted NAD/FAD-depe 99.9 1.4E-21 3E-26 154.1 10.3 220 2-238 104-330 (331)
21 PLN02487 zeta-carotene desatur 99.8 1.7E-19 3.6E-24 161.9 20.4 231 1-244 289-558 (569)
22 TIGR02733 desat_CrtD C-3',4' d 99.8 2.1E-19 4.6E-24 161.0 20.2 232 1-237 227-490 (492)
23 TIGR02732 zeta_caro_desat caro 99.8 9.3E-19 2E-23 155.5 18.2 217 7-236 224-474 (474)
24 COG1232 HemY Protoporphyrinoge 99.8 4.1E-18 9E-23 147.3 18.4 221 1-236 210-443 (444)
25 TIGR02730 carot_isom carotene 99.8 3.8E-17 8.2E-22 146.4 20.5 234 1-238 224-491 (493)
26 TIGR02734 crtI_fam phytoene de 99.8 3E-17 6.5E-22 147.5 16.1 235 1-241 214-494 (502)
27 PRK07208 hypothetical protein; 99.7 5.3E-17 1.2E-21 145.1 16.4 225 1-238 213-460 (479)
28 KOG4254 Phytoene desaturase [C 99.5 8.3E-13 1.8E-17 111.6 15.5 230 1-238 259-545 (561)
29 COG1233 Phytoene dehydrogenase 99.3 4.4E-12 9.5E-17 113.3 7.7 227 1-237 219-481 (487)
30 KOG1276 Protoporphyrinogen oxi 99.3 2.3E-10 5E-15 96.6 16.0 223 1-236 244-490 (491)
31 COG3349 Uncharacterized conser 98.7 4.5E-08 9.8E-13 85.4 9.0 234 16-260 230-484 (485)
32 COG2907 Predicted NAD/FAD-bind 98.4 1.8E-06 3.8E-11 71.7 8.8 87 1-91 215-303 (447)
33 TIGR01984 UbiH 2-polyprenyl-6- 98.0 0.00078 1.7E-08 58.6 17.0 50 8-57 111-162 (382)
34 PF07156 Prenylcys_lyase: Pren 97.9 0.00013 2.8E-09 62.8 10.3 57 1-58 123-188 (368)
35 TIGR01988 Ubi-OHases Ubiquinon 97.9 0.0037 8E-08 54.3 19.6 41 16-56 122-162 (385)
36 PRK09126 hypothetical protein; 97.8 0.0077 1.7E-07 52.6 19.8 43 15-57 125-167 (392)
37 PRK07494 2-octaprenyl-6-methox 97.7 0.0045 9.8E-08 54.0 17.7 186 18-237 128-316 (388)
38 PRK08773 2-octaprenyl-3-methyl 97.6 0.017 3.6E-07 50.5 19.9 43 15-57 127-169 (392)
39 PRK05732 2-octaprenyl-6-methox 97.6 0.014 3E-07 51.0 19.2 50 8-57 118-169 (395)
40 PRK07333 2-octaprenyl-6-methox 97.6 0.019 4E-07 50.4 19.6 42 15-56 125-166 (403)
41 PRK07364 2-octaprenyl-6-methox 97.5 0.02 4.4E-07 50.4 18.3 43 15-57 136-181 (415)
42 PRK08850 2-octaprenyl-6-methox 97.4 0.015 3.2E-07 51.1 16.4 50 8-57 117-168 (405)
43 PTZ00363 rab-GDP dissociation 97.3 0.00046 1E-08 61.1 6.2 53 2-54 228-287 (443)
44 PRK08020 ubiF 2-octaprenyl-3-m 97.3 0.034 7.4E-07 48.5 17.7 51 7-57 117-169 (391)
45 PRK05714 2-octaprenyl-3-methyl 97.3 0.073 1.6E-06 46.7 19.2 43 15-57 126-168 (405)
46 COG0654 UbiH 2-polyprenyl-6-me 97.2 0.053 1.1E-06 47.4 18.0 202 8-240 110-317 (387)
47 PRK07608 ubiquinone biosynthes 97.2 0.12 2.5E-06 45.1 19.5 48 8-56 117-166 (388)
48 PRK08013 oxidoreductase; Provi 97.2 0.091 2E-06 46.1 18.8 50 8-57 117-168 (400)
49 TIGR02032 GG-red-SF geranylger 97.1 0.035 7.6E-07 46.1 14.8 43 15-57 105-148 (295)
50 PRK07588 hypothetical protein; 97.1 0.026 5.7E-07 49.3 14.3 48 10-57 111-158 (391)
51 PRK08849 2-octaprenyl-3-methyl 97.0 0.1 2.2E-06 45.5 17.7 44 15-58 125-168 (384)
52 PRK10015 oxidoreductase; Provi 96.9 0.068 1.5E-06 47.5 15.3 43 15-57 122-164 (429)
53 TIGR02352 thiamin_ThiO glycine 96.8 0.21 4.5E-06 42.5 17.4 42 15-57 151-193 (337)
54 PRK06996 hypothetical protein; 96.8 0.15 3.2E-06 44.8 16.7 47 8-54 121-171 (398)
55 PF05834 Lycopene_cycl: Lycope 96.8 0.22 4.7E-06 43.4 17.6 49 8-56 93-141 (374)
56 PRK11259 solA N-methyltryptoph 96.8 0.22 4.7E-06 43.2 17.6 43 14-57 162-204 (376)
57 TIGR01989 COQ6 Ubiquinone bios 96.7 0.17 3.6E-06 45.0 16.6 50 8-57 123-183 (437)
58 PF13738 Pyr_redox_3: Pyridine 96.7 0.0046 1E-07 48.6 5.9 41 15-55 96-136 (203)
59 PRK06617 2-octaprenyl-6-methox 96.5 0.31 6.8E-06 42.3 16.5 49 8-57 110-160 (374)
60 TIGR01377 soxA_mon sarcosine o 96.4 0.53 1.2E-05 40.8 17.9 41 15-56 159-199 (380)
61 PRK10157 putative oxidoreducta 96.4 0.084 1.8E-06 46.9 12.8 43 15-57 122-164 (428)
62 COG0644 FixC Dehydrogenases (f 96.4 0.27 5.9E-06 43.1 15.7 45 13-57 107-152 (396)
63 PRK06185 hypothetical protein; 96.4 0.59 1.3E-05 41.0 17.9 43 15-57 123-169 (407)
64 PRK11445 putative oxidoreducta 96.4 0.58 1.3E-05 40.3 18.4 46 12-57 109-157 (351)
65 COG2081 Predicted flavoprotein 96.3 0.012 2.6E-07 50.5 6.6 52 3-54 108-164 (408)
66 PRK06184 hypothetical protein; 96.3 0.2 4.4E-06 45.4 14.6 51 8-58 115-169 (502)
67 TIGR00031 UDP-GALP_mutase UDP- 96.0 0.17 3.6E-06 44.1 12.0 54 1-58 193-248 (377)
68 PRK06183 mhpA 3-(3-hydroxyphen 95.9 0.48 1E-05 43.4 15.4 44 15-58 128-175 (538)
69 PF01266 DAO: FAD dependent ox 95.9 0.02 4.3E-07 48.9 6.0 52 5-57 146-203 (358)
70 PRK06126 hypothetical protein; 95.8 0.59 1.3E-05 42.9 15.8 43 15-57 141-188 (545)
71 TIGR03197 MnmC_Cterm tRNA U-34 95.8 0.02 4.4E-07 49.8 6.0 44 14-57 147-190 (381)
72 PF13454 NAD_binding_9: FAD-NA 95.6 0.049 1.1E-06 41.1 6.6 36 19-54 119-154 (156)
73 PF03486 HI0933_like: HI0933-l 95.6 0.042 9.2E-07 48.3 6.8 51 5-55 108-164 (409)
74 PRK08243 4-hydroxybenzoate 3-m 95.1 1.6 3.4E-05 38.2 15.1 44 15-58 117-164 (392)
75 COG2509 Uncharacterized FAD-de 94.9 0.079 1.7E-06 46.4 6.3 41 15-55 187-228 (486)
76 COG0579 Predicted dehydrogenas 94.9 0.1 2.2E-06 46.0 7.0 44 15-58 167-212 (429)
77 PRK08244 hypothetical protein; 94.8 1.9 4.1E-05 39.1 15.4 43 15-57 114-159 (493)
78 PRK08132 FAD-dependent oxidore 94.6 3.6 7.9E-05 37.8 17.2 50 8-57 131-185 (547)
79 PLN02463 lycopene beta cyclase 94.6 1.6 3.6E-05 38.9 14.0 41 15-56 128-168 (447)
80 PRK07236 hypothetical protein; 94.0 0.18 3.8E-06 44.0 6.7 53 5-57 99-154 (386)
81 PTZ00383 malate:quinone oxidor 93.8 0.23 4.9E-06 44.9 7.1 42 16-58 232-274 (497)
82 PRK05868 hypothetical protein; 93.7 0.2 4.3E-06 43.6 6.3 45 14-58 117-161 (372)
83 TIGR03219 salicylate_mono sali 93.6 0.21 4.6E-06 44.0 6.5 52 7-58 106-160 (414)
84 COG0665 DadA Glycine/D-amino a 93.6 3.1 6.8E-05 36.0 13.7 40 17-57 173-212 (387)
85 PRK08294 phenol 2-monooxygenas 93.4 7.1 0.00015 36.7 16.6 43 16-58 158-211 (634)
86 PRK11728 hydroxyglutarate oxid 93.3 0.3 6.5E-06 42.7 6.9 50 6-56 149-203 (393)
87 PRK06847 hypothetical protein; 93.3 0.31 6.7E-06 42.2 6.9 43 15-57 121-163 (375)
88 TIGR03862 flavo_PP4765 unchara 93.0 0.37 8E-06 41.9 6.9 51 4-56 84-140 (376)
89 PRK06753 hypothetical protein; 92.9 0.35 7.5E-06 41.9 6.7 51 7-57 99-152 (373)
90 PRK06834 hypothetical protein; 92.8 0.37 8.1E-06 43.5 6.9 43 15-57 114-156 (488)
91 PRK07846 mycothione reductase; 92.6 0.42 9E-06 42.8 6.9 45 12-56 217-261 (451)
92 TIGR01790 carotene-cycl lycope 92.5 6.6 0.00014 34.1 18.0 41 16-57 100-141 (388)
93 TIGR03452 mycothione_red mycot 92.5 0.47 1E-05 42.4 7.2 45 12-56 220-264 (452)
94 TIGR02023 BchP-ChlP geranylger 92.5 6.8 0.00015 34.2 15.7 37 204-240 264-303 (388)
95 PRK01747 mnmC bifunctional tRN 92.5 0.32 6.8E-06 45.8 6.2 51 7-57 409-463 (662)
96 PRK13339 malate:quinone oxidor 92.3 0.47 1E-05 42.9 6.8 52 6-57 188-247 (497)
97 TIGR01373 soxB sarcosine oxida 92.2 7.6 0.00016 34.1 17.4 42 15-57 197-240 (407)
98 PRK00711 D-amino acid dehydrog 92.1 0.51 1.1E-05 41.5 6.7 42 15-57 215-257 (416)
99 PRK06116 glutathione reductase 92.0 0.54 1.2E-05 42.0 6.9 48 8-55 214-263 (450)
100 PRK08163 salicylate hydroxylas 91.9 0.47 1E-05 41.4 6.3 42 16-57 125-166 (396)
101 PRK09897 hypothetical protein; 91.8 0.52 1.1E-05 43.0 6.6 40 16-55 124-164 (534)
102 PRK07190 hypothetical protein; 91.4 0.67 1.5E-05 41.9 6.8 44 15-58 123-166 (487)
103 PLN02507 glutathione reductase 91.4 0.74 1.6E-05 41.8 7.1 42 15-56 258-299 (499)
104 PRK04965 NADH:flavorubredoxin 91.3 0.69 1.5E-05 40.2 6.6 41 15-55 197-237 (377)
105 PLN02172 flavin-containing mon 91.1 0.75 1.6E-05 41.3 6.8 51 6-56 111-172 (461)
106 TIGR00275 flavoprotein, HI0933 91.1 0.88 1.9E-05 40.0 7.2 50 6-56 105-159 (400)
107 TIGR03329 Phn_aa_oxid putative 90.8 0.74 1.6E-05 41.3 6.5 40 15-56 197-236 (460)
108 PRK12409 D-amino acid dehydrog 90.8 0.77 1.7E-05 40.4 6.6 43 15-57 211-258 (410)
109 PRK06416 dihydrolipoamide dehy 90.8 0.83 1.8E-05 40.9 6.8 42 15-56 227-271 (462)
110 PRK05257 malate:quinone oxidor 90.7 0.79 1.7E-05 41.5 6.6 51 7-57 188-246 (494)
111 PRK05249 soluble pyridine nucl 90.7 0.9 2E-05 40.7 7.0 49 8-56 222-271 (461)
112 TIGR03378 glycerol3P_GlpB glyc 90.6 0.98 2.1E-05 39.8 6.8 42 15-56 277-321 (419)
113 TIGR01350 lipoamide_DH dihydro 90.5 0.99 2.1E-05 40.4 7.1 42 15-56 225-268 (461)
114 TIGR01424 gluta_reduc_2 glutat 90.5 1 2.2E-05 40.2 7.1 47 9-55 214-261 (446)
115 TIGR01292 TRX_reduct thioredox 90.3 1.1 2.3E-05 37.3 6.7 41 15-56 71-111 (300)
116 PF06039 Mqo: Malate:quinone o 90.0 0.78 1.7E-05 40.6 5.7 54 6-59 181-246 (488)
117 PRK07845 flavoprotein disulfid 89.7 1.2 2.6E-05 40.0 6.9 42 15-56 232-273 (466)
118 PRK09754 phenylpropionate diox 89.4 1.2 2.6E-05 39.0 6.6 41 14-55 199-239 (396)
119 PLN02927 antheraxanthin epoxid 89.1 1.3 2.8E-05 41.6 6.7 51 7-57 195-248 (668)
120 COG1249 Lpd Pyruvate/2-oxoglut 89.0 1.3 2.8E-05 39.6 6.4 47 8-54 220-269 (454)
121 PF00070 Pyr_redox: Pyridine n 89.0 0.98 2.1E-05 29.5 4.4 27 15-41 54-80 (80)
122 PF00996 GDI: GDP dissociation 88.8 1.4 3E-05 39.2 6.4 51 2-52 228-284 (438)
123 PRK05329 anaerobic glycerol-3- 88.6 1.8 3.9E-05 38.4 7.0 41 15-55 273-316 (422)
124 TIGR02485 CobZ_N-term precorri 88.5 1.8 3.8E-05 38.5 7.1 53 3-55 120-181 (432)
125 PRK07045 putative monooxygenas 88.2 1.7 3.6E-05 37.9 6.6 43 15-57 121-165 (388)
126 TIGR03140 AhpF alkyl hydropero 88.1 1.8 3.9E-05 39.5 7.0 42 15-56 281-322 (515)
127 TIGR01320 mal_quin_oxido malat 87.6 1.8 3.9E-05 39.1 6.6 43 15-57 192-240 (483)
128 PLN00093 geranylgeranyl diphos 87.5 21 0.00045 32.0 16.4 38 203-240 308-348 (450)
129 PRK15317 alkyl hydroperoxide r 87.4 2 4.4E-05 39.2 6.9 42 15-56 280-321 (517)
130 PRK12831 putative oxidoreducta 86.9 0.71 1.5E-05 41.5 3.6 43 199-243 422-464 (464)
131 PRK08010 pyridine nucleotide-d 86.7 2.5 5.3E-05 37.7 6.9 40 15-55 213-252 (441)
132 TIGR01423 trypano_reduc trypan 86.4 2.6 5.7E-05 38.1 6.9 48 8-55 237-286 (486)
133 PF00743 FMO-like: Flavin-bind 86.3 1.5 3.3E-05 40.0 5.5 41 17-57 102-150 (531)
134 TIGR03364 HpnW_proposed FAD de 86.3 1.9 4.1E-05 37.2 5.8 47 6-57 149-197 (365)
135 PRK06475 salicylate hydroxylas 86.2 2.4 5.2E-05 37.2 6.5 44 15-58 122-168 (400)
136 PRK07818 dihydrolipoamide dehy 86.2 2.6 5.7E-05 37.8 6.8 41 15-55 227-271 (466)
137 PTZ00052 thioredoxin reductase 86.2 2.6 5.7E-05 38.2 6.9 49 8-56 228-277 (499)
138 PF01134 GIDA: Glucose inhibit 86.1 2.5 5.4E-05 37.0 6.3 39 16-55 111-150 (392)
139 PRK06327 dihydrolipoamide dehy 85.9 2.6 5.6E-05 38.0 6.6 48 9-56 231-283 (475)
140 TIGR01421 gluta_reduc_1 glutat 85.6 3.1 6.7E-05 37.2 7.0 42 15-56 221-264 (450)
141 PRK08274 tricarballylate dehyd 85.0 2.7 5.9E-05 37.7 6.4 52 4-55 129-190 (466)
142 PRK07251 pyridine nucleotide-d 84.8 3.4 7.3E-05 36.8 6.8 40 15-55 212-251 (438)
143 PRK14727 putative mercuric red 84.7 3.4 7.5E-05 37.3 6.9 41 15-56 242-282 (479)
144 PRK12266 glpD glycerol-3-phosp 84.3 2.8 6E-05 38.2 6.1 45 13-57 167-216 (508)
145 TIGR03377 glycerol3P_GlpA glyc 84.3 33 0.00071 31.3 18.8 45 13-57 140-190 (516)
146 PLN02464 glycerol-3-phosphate 83.8 39 0.00084 31.8 17.6 43 15-57 246-296 (627)
147 PRK06467 dihydrolipoamide dehy 83.6 3.7 8E-05 37.0 6.6 49 8-56 221-273 (471)
148 PRK13369 glycerol-3-phosphate 83.4 3.4 7.4E-05 37.5 6.4 45 13-57 167-215 (502)
149 PRK14694 putative mercuric red 83.2 4.3 9.4E-05 36.5 6.9 41 15-56 232-272 (468)
150 PF00890 FAD_binding_2: FAD bi 83.2 2.7 5.9E-05 37.0 5.5 53 4-56 139-202 (417)
151 TIGR02374 nitri_red_nirB nitri 82.6 3.9 8.4E-05 39.5 6.6 42 15-56 196-237 (785)
152 PRK06175 L-aspartate oxidase; 82.5 4.7 0.0001 35.9 6.7 49 7-55 133-187 (433)
153 TIGR01438 TGR thioredoxin and 82.2 5.2 0.00011 36.2 7.0 47 10-56 228-278 (484)
154 PRK06370 mercuric reductase; V 81.6 5.4 0.00012 35.8 6.8 42 15-56 226-270 (463)
155 PRK06115 dihydrolipoamide dehy 81.2 5.4 0.00012 35.9 6.7 42 15-56 229-275 (466)
156 PRK13748 putative mercuric red 80.6 5.4 0.00012 36.7 6.7 41 15-56 324-364 (561)
157 KOG2404 Fumarate reductase, fl 80.5 3.2 7E-05 35.1 4.5 42 16-57 160-206 (477)
158 TIGR02053 MerA mercuric reduct 80.5 6 0.00013 35.5 6.8 41 15-55 221-264 (463)
159 PF00732 GMC_oxred_N: GMC oxid 80.3 4.1 9E-05 33.9 5.4 50 8-57 199-258 (296)
160 PRK06912 acoL dihydrolipoamide 80.0 7.4 0.00016 34.9 7.2 41 15-56 225-267 (458)
161 TIGR03385 CoA_CoA_reduc CoA-di 79.4 5.8 0.00012 35.1 6.2 40 15-56 193-232 (427)
162 PRK14989 nitrite reductase sub 79.4 5.6 0.00012 38.7 6.5 49 8-56 193-244 (847)
163 PRK05976 dihydrolipoamide dehy 79.0 7.9 0.00017 34.8 7.0 47 10-56 229-280 (472)
164 TIGR01813 flavo_cyto_c flavocy 79.0 7.3 0.00016 34.6 6.8 42 15-56 144-191 (439)
165 PTZ00318 NADH dehydrogenase-li 78.9 5.8 0.00013 35.2 6.1 37 15-55 242-278 (424)
166 COG1252 Ndh NADH dehydrogenase 78.9 4.5 9.8E-05 35.5 5.2 38 15-56 223-261 (405)
167 PRK12769 putative oxidoreducta 78.7 2.3 4.9E-05 40.1 3.6 41 199-241 613-653 (654)
168 TIGR03169 Nterm_to_SelD pyridi 78.6 5.4 0.00012 34.4 5.7 37 15-55 205-241 (364)
169 PRK09564 coenzyme A disulfide 78.5 7 0.00015 34.8 6.5 40 15-55 205-244 (444)
170 PRK06481 fumarate reductase fl 78.4 8.3 0.00018 35.1 7.0 40 15-54 204-248 (506)
171 TIGR03385 CoA_CoA_reduc CoA-di 78.3 4.6 0.0001 35.7 5.3 42 15-56 58-102 (427)
172 PRK12845 3-ketosteroid-delta-1 78.0 7.7 0.00017 35.9 6.7 51 6-56 217-277 (564)
173 PRK12770 putative glutamate sy 78.0 3.2 6.9E-05 35.7 4.1 39 201-241 313-351 (352)
174 PRK12809 putative oxidoreducta 77.9 3.1 6.7E-05 39.1 4.2 42 199-242 596-637 (639)
175 PRK08071 L-aspartate oxidase; 77.9 5.3 0.00011 36.4 5.6 45 11-55 139-188 (510)
176 PRK06134 putative FAD-binding 77.8 8.3 0.00018 35.8 6.9 42 15-56 231-277 (581)
177 PRK11101 glpA sn-glycerol-3-ph 77.7 8.1 0.00017 35.6 6.8 45 13-57 161-211 (546)
178 PRK12810 gltD glutamate syntha 77.7 3.5 7.6E-05 37.1 4.4 41 199-241 426-466 (471)
179 PRK09564 coenzyme A disulfide 77.4 5.1 0.00011 35.6 5.3 42 15-56 70-114 (444)
180 KOG1439 RAB proteins geranylge 77.4 6.5 0.00014 34.3 5.5 50 2-51 228-283 (440)
181 PRK06292 dihydrolipoamide dehy 77.3 8.6 0.00019 34.4 6.8 46 10-55 218-266 (460)
182 PF01494 FAD_binding_3: FAD bi 77.2 6.6 0.00014 33.2 5.8 43 15-57 125-172 (356)
183 PRK07538 hypothetical protein; 77.1 7.2 0.00016 34.3 6.1 51 8-58 108-166 (413)
184 TIGR02028 ChlP geranylgeranyl 76.9 4.2 9E-05 35.7 4.5 37 204-240 270-309 (398)
185 KOG2614 Kynurenine 3-monooxyge 76.4 53 0.0012 28.9 10.8 36 205-240 289-327 (420)
186 PRK11749 dihydropyrimidine deh 76.4 3.4 7.5E-05 37.0 4.0 42 199-242 413-454 (457)
187 PRK09754 phenylpropionate diox 76.2 5.5 0.00012 34.9 5.1 41 14-56 71-111 (396)
188 PLN02697 lycopene epsilon cycl 76.1 65 0.0014 29.7 17.8 42 15-57 206-248 (529)
189 TIGR01316 gltA glutamate synth 75.9 2.9 6.3E-05 37.4 3.4 38 199-238 411-448 (449)
190 PRK04965 NADH:flavorubredoxin 75.6 4.9 0.00011 34.9 4.6 39 15-56 72-110 (377)
191 TIGR02374 nitri_red_nirB nitri 75.5 5.2 0.00011 38.6 5.1 40 15-56 68-107 (785)
192 PF07992 Pyr_redox_2: Pyridine 75.4 4.2 9.1E-05 31.5 3.8 49 8-56 64-121 (201)
193 PRK13512 coenzyme A disulfide 74.9 9 0.0002 34.1 6.2 45 8-56 195-240 (438)
194 KOG2820 FAD-dependent oxidored 74.9 17 0.00036 31.2 7.2 44 16-59 168-214 (399)
195 PRK13512 coenzyme A disulfide 74.1 6.1 0.00013 35.2 4.9 42 15-56 72-116 (438)
196 TIGR01292 TRX_reduct thioredox 74.1 3.2 6.9E-05 34.4 3.0 37 201-238 263-299 (300)
197 PLN02661 Putative thiazole syn 73.7 4 8.7E-05 35.2 3.4 40 203-242 286-330 (357)
198 PRK12778 putative bifunctional 73.0 4 8.6E-05 39.2 3.6 40 200-241 712-751 (752)
199 PRK07121 hypothetical protein; 73.0 13 0.00029 33.6 6.9 52 5-56 176-238 (492)
200 COG2072 TrkA Predicted flavopr 73.0 10 0.00022 33.9 6.0 40 17-56 100-143 (443)
201 COG1635 THI4 Ribulose 1,5-bisp 72.9 3.5 7.6E-05 33.0 2.7 41 201-241 216-261 (262)
202 TIGR01317 GOGAT_sm_gam glutama 72.7 4.5 9.6E-05 36.6 3.7 41 199-241 440-480 (485)
203 PF13434 K_oxygenase: L-lysine 71.7 5.5 0.00012 34.3 3.9 38 17-54 111-156 (341)
204 PRK12843 putative FAD-binding 71.3 14 0.0003 34.4 6.6 43 200-242 526-575 (578)
205 PTZ00058 glutathione reductase 71.3 15 0.00033 34.0 6.8 48 8-55 284-334 (561)
206 TIGR03169 Nterm_to_SelD pyridi 71.1 5.7 0.00012 34.2 3.9 40 15-57 68-107 (364)
207 TIGR00551 nadB L-aspartate oxi 71.0 10 0.00022 34.3 5.7 50 8-57 134-189 (488)
208 TIGR01789 lycopene_cycl lycope 70.9 9.8 0.00021 33.1 5.3 36 17-56 102-137 (370)
209 COG0492 TrxB Thioredoxin reduc 70.6 13 0.00029 31.4 5.9 43 199-242 261-303 (305)
210 PRK04176 ribulose-1,5-biphosph 70.4 6 0.00013 32.5 3.7 40 202-241 212-256 (257)
211 PRK08401 L-aspartate oxidase; 70.3 15 0.00033 33.0 6.6 49 7-57 121-175 (466)
212 PRK12814 putative NADPH-depend 70.1 5.3 0.00011 37.7 3.7 42 199-242 462-503 (652)
213 PRK07843 3-ketosteroid-delta-1 69.9 16 0.00034 33.8 6.7 42 15-56 222-268 (557)
214 PRK12834 putative FAD-binding 69.6 16 0.00035 33.6 6.7 37 200-236 501-547 (549)
215 PRK12842 putative succinate de 69.4 17 0.00037 33.7 6.8 43 200-242 521-570 (574)
216 KOG1346 Programmed cell death 69.2 5.8 0.00013 34.9 3.4 41 15-55 407-447 (659)
217 TIGR01318 gltD_gamma_fam gluta 69.1 7.2 0.00016 35.1 4.2 38 200-239 428-465 (467)
218 PRK07512 L-aspartate oxidase; 69.1 12 0.00025 34.3 5.6 42 15-56 151-196 (513)
219 PRK12775 putative trifunctiona 69.1 6.4 0.00014 39.1 4.2 42 199-242 716-757 (1006)
220 KOG1335 Dihydrolipoamide dehyd 68.9 17 0.00037 31.8 6.0 41 15-55 266-312 (506)
221 PRK10262 thioredoxin reductase 68.9 5 0.00011 33.9 3.1 42 199-241 275-316 (321)
222 PRK12771 putative glutamate sy 68.8 5.6 0.00012 36.8 3.5 41 200-242 406-446 (564)
223 PRK07573 sdhA succinate dehydr 68.7 17 0.00038 34.2 6.8 42 15-56 184-231 (640)
224 TIGR03140 AhpF alkyl hydropero 67.9 17 0.00038 33.1 6.5 48 8-55 393-448 (515)
225 PRK05945 sdhA succinate dehydr 67.3 19 0.0004 33.5 6.6 42 15-56 149-196 (575)
226 PRK12844 3-ketosteroid-delta-1 66.9 20 0.00043 33.2 6.7 42 15-56 222-268 (557)
227 PRK14989 nitrite reductase sub 66.9 9.9 0.00022 37.0 4.9 40 15-56 73-112 (847)
228 COG2509 Uncharacterized FAD-de 66.8 5.9 0.00013 35.1 3.0 39 199-239 445-483 (486)
229 PRK12837 3-ketosteroid-delta-1 66.3 21 0.00046 32.6 6.7 42 15-56 188-234 (513)
230 TIGR00292 thiazole biosynthesi 66.1 6.8 0.00015 32.1 3.2 38 202-239 211-253 (254)
231 PRK10262 thioredoxin reductase 65.5 17 0.00036 30.7 5.6 41 15-55 199-246 (321)
232 PRK13984 putative oxidoreducta 65.3 7.6 0.00016 36.2 3.7 39 199-240 564-602 (604)
233 PRK05192 tRNA uridine 5-carbox 65.1 22 0.00048 33.2 6.5 41 15-56 115-156 (618)
234 TIGR01812 sdhA_frdA_Gneg succi 65.0 23 0.0005 32.7 6.8 42 15-56 143-190 (566)
235 PRK15458 tagatose 6-phosphate 64.8 25 0.00054 31.0 6.4 77 165-245 42-123 (426)
236 PRK06069 sdhA succinate dehydr 64.8 20 0.00044 33.3 6.3 49 8-56 143-199 (577)
237 PLN02546 glutathione reductase 64.8 25 0.00053 32.6 6.8 42 15-56 307-349 (558)
238 PRK15052 D-tagatose-1,6-bispho 64.4 26 0.00057 30.8 6.4 77 165-245 39-120 (421)
239 TIGR01810 betA choline dehydro 64.2 13 0.00027 34.1 4.9 41 15-55 208-253 (532)
240 PRK04176 ribulose-1,5-biphosph 64.0 24 0.00052 28.9 6.1 42 15-56 118-172 (257)
241 PRK12835 3-ketosteroid-delta-1 63.9 26 0.00056 32.7 6.8 40 200-239 524-570 (584)
242 KOG1399 Flavin-containing mono 63.1 18 0.00039 32.4 5.4 40 17-56 108-152 (448)
243 PF04820 Trp_halogenase: Trypt 62.9 22 0.00048 31.9 6.1 44 13-57 166-211 (454)
244 PRK07803 sdhA succinate dehydr 62.2 22 0.00049 33.4 6.2 40 16-55 166-211 (626)
245 TIGR02810 agaZ_gatZ D-tagatose 62.2 31 0.00067 30.3 6.5 77 165-245 38-119 (420)
246 PRK12779 putative bifunctional 61.9 10 0.00022 37.5 4.0 39 200-240 589-627 (944)
247 PRK06452 sdhA succinate dehydr 61.9 26 0.00056 32.5 6.5 43 15-57 150-198 (566)
248 PRK09231 fumarate reductase fl 61.8 25 0.00054 32.7 6.4 42 15-56 148-195 (582)
249 PLN02852 ferredoxin-NADP+ redu 61.5 12 0.00025 34.1 4.0 40 201-241 384-423 (491)
250 PTZ00153 lipoamide dehydrogena 61.0 29 0.00063 32.9 6.6 43 14-56 367-426 (659)
251 PF01134 GIDA: Glucose inhibit 61.0 9.5 0.00021 33.4 3.3 40 198-240 349-389 (392)
252 PRK12810 gltD glutamate syntha 60.9 26 0.00056 31.6 6.2 44 12-55 340-398 (471)
253 COG0578 GlpA Glycerol-3-phosph 60.8 1.4E+02 0.003 27.5 12.2 49 9-57 172-225 (532)
254 PRK15317 alkyl hydroperoxide r 60.6 10 0.00022 34.7 3.6 43 199-242 472-514 (517)
255 TIGR02360 pbenz_hydroxyl 4-hyd 60.5 31 0.00067 30.2 6.5 35 203-237 278-315 (390)
256 PTZ00318 NADH dehydrogenase-li 59.5 13 0.00029 32.9 4.1 41 202-242 307-350 (424)
257 COG3486 IucD Lysine/ornithine 59.1 29 0.00063 30.5 5.8 41 17-57 294-340 (436)
258 TIGR01811 sdhA_Bsu succinate d 59.0 35 0.00075 32.0 6.8 41 15-55 147-194 (603)
259 TIGR03143 AhpF_homolog putativ 58.9 14 0.00031 34.1 4.2 41 200-241 270-310 (555)
260 TIGR00292 thiazole biosynthesi 58.7 41 0.00089 27.5 6.5 42 15-56 114-169 (254)
261 TIGR01816 sdhA_forward succina 58.3 34 0.00073 31.7 6.6 42 15-56 133-180 (565)
262 PRK06854 adenylylsulfate reduc 58.1 35 0.00076 32.0 6.7 44 198-241 390-433 (608)
263 TIGR03862 flavo_PP4765 unchara 58.0 14 0.0003 32.3 3.8 39 200-238 333-374 (376)
264 PRK13984 putative oxidoreducta 57.8 39 0.00083 31.6 7.0 50 7-56 468-537 (604)
265 TIGR03315 Se_ygfK putative sel 57.8 12 0.00025 37.2 3.6 36 200-237 802-837 (1012)
266 TIGR01421 gluta_reduc_1 glutat 57.2 15 0.00033 32.8 4.1 36 199-236 291-326 (450)
267 TIGR02462 pyranose_ox pyranose 57.0 29 0.00062 32.0 5.7 42 16-57 229-279 (544)
268 PRK08626 fumarate reductase fl 56.5 37 0.0008 32.2 6.6 42 15-56 172-219 (657)
269 PRK09853 putative selenate red 56.4 14 0.00029 36.7 3.8 38 200-239 804-841 (1019)
270 COG0446 HcaD Uncharacterized N 56.1 37 0.00081 29.4 6.3 42 15-56 192-236 (415)
271 PRK08205 sdhA succinate dehydr 56.1 42 0.00092 31.2 6.9 41 200-240 372-419 (583)
272 COG1252 Ndh NADH dehydrogenase 56.0 16 0.00036 32.1 3.9 39 203-241 291-333 (405)
273 PRK06116 glutathione reductase 55.6 16 0.00035 32.6 4.0 37 199-237 291-327 (450)
274 PRK12814 putative NADPH-depend 55.4 41 0.0009 31.8 6.7 49 7-55 367-435 (652)
275 PRK08275 putative oxidoreducta 55.0 40 0.00087 31.1 6.5 41 199-240 365-405 (554)
276 PRK09078 sdhA succinate dehydr 54.2 44 0.00095 31.2 6.7 42 15-56 163-211 (598)
277 PRK06263 sdhA succinate dehydr 54.2 36 0.00078 31.3 6.0 42 15-56 148-196 (543)
278 PRK12842 putative succinate de 53.7 18 0.00039 33.6 4.0 50 7-56 215-274 (574)
279 PF08013 Tagatose_6_P_K: Tagat 53.5 37 0.0008 29.9 5.5 72 164-239 41-116 (424)
280 TIGR01176 fum_red_Fp fumarate 53.4 44 0.00096 31.1 6.5 42 15-56 147-194 (580)
281 KOG1336 Monodehydroascorbate/f 53.3 28 0.00061 31.2 4.8 39 15-55 141-179 (478)
282 PRK11749 dihydropyrimidine deh 53.3 56 0.0012 29.2 7.0 43 13-55 323-385 (457)
283 PRK05335 tRNA (uracil-5-)-meth 52.8 17 0.00038 32.3 3.6 36 202-240 329-364 (436)
284 TIGR01424 gluta_reduc_2 glutat 52.8 19 0.00041 32.2 3.9 38 198-237 288-325 (446)
285 KOG3851 Sulfide:quinone oxidor 52.6 7.1 0.00015 33.1 1.1 34 22-57 112-145 (446)
286 PRK09078 sdhA succinate dehydr 52.3 20 0.00043 33.5 4.1 41 200-240 382-429 (598)
287 PRK13977 myosin-cross-reactive 51.4 39 0.00084 31.4 5.6 35 203-237 486-522 (576)
288 PRK14727 putative mercuric red 51.2 18 0.00039 32.7 3.6 38 198-237 308-345 (479)
289 TIGR01816 sdhA_forward succina 50.9 20 0.00043 33.2 3.8 40 201-240 351-397 (565)
290 KOG0405 Pyridine nucleotide-di 50.9 39 0.00085 29.3 5.1 41 15-55 244-285 (478)
291 PTZ00306 NADH-dependent fumara 50.8 48 0.001 33.8 6.7 44 200-243 857-906 (1167)
292 COG0492 TrxB Thioredoxin reduc 50.4 24 0.00052 29.8 4.0 49 7-57 62-115 (305)
293 PRK07804 L-aspartate oxidase; 50.2 48 0.001 30.5 6.2 42 15-56 158-209 (541)
294 TIGR01423 trypano_reduc trypan 49.7 23 0.00049 32.2 3.9 36 199-236 314-349 (486)
295 PRK08274 tricarballylate dehyd 49.6 23 0.0005 31.8 4.0 41 201-241 416-463 (466)
296 PRK02106 choline dehydrogenase 49.5 34 0.00073 31.6 5.1 41 15-55 215-260 (560)
297 PTZ00139 Succinate dehydrogena 49.4 61 0.0013 30.5 6.8 41 15-55 180-227 (617)
298 KOG1336 Monodehydroascorbate/f 49.1 43 0.00092 30.1 5.3 43 15-57 269-313 (478)
299 PRK13748 putative mercuric red 49.1 21 0.00045 32.9 3.7 36 199-236 391-426 (561)
300 PRK05675 sdhA succinate dehydr 48.9 66 0.0014 29.9 6.9 50 7-56 127-188 (570)
301 TIGR00136 gidA glucose-inhibit 48.4 71 0.0015 30.0 6.8 41 16-57 112-154 (617)
302 PF12831 FAD_oxidored: FAD dep 48.2 5.9 0.00013 35.2 0.0 44 15-58 104-151 (428)
303 PRK07395 L-aspartate oxidase; 47.6 43 0.00093 31.0 5.4 42 15-56 149-196 (553)
304 PRK12843 putative FAD-binding 47.0 26 0.00056 32.6 3.9 42 15-56 235-281 (578)
305 PRK14694 putative mercuric red 46.9 24 0.00052 31.7 3.6 36 199-236 298-333 (468)
306 PLN00128 Succinate dehydrogena 46.9 27 0.00059 32.9 4.1 39 201-239 421-466 (635)
307 PLN02507 glutathione reductase 46.7 25 0.00055 32.0 3.8 38 198-237 325-362 (499)
308 PRK07818 dihydrolipoamide dehy 45.9 26 0.00056 31.5 3.7 36 199-236 299-334 (466)
309 PTZ00367 squalene epoxidase; P 45.8 2.6E+02 0.0055 26.1 14.4 34 203-236 336-372 (567)
310 PRK05249 soluble pyridine nucl 45.7 26 0.00056 31.4 3.7 36 199-236 298-333 (461)
311 PRK08205 sdhA succinate dehydr 45.2 32 0.0007 32.0 4.3 42 15-56 154-205 (583)
312 TIGR02485 CobZ_N-term precorri 45.0 27 0.00059 31.0 3.7 39 200-238 384-429 (432)
313 COG1251 NirB NAD(P)H-nitrite r 45.0 34 0.00073 32.6 4.2 48 197-244 263-312 (793)
314 COG2081 Predicted flavoprotein 45.0 23 0.0005 31.0 3.0 39 200-238 365-406 (408)
315 PRK06292 dihydrolipoamide dehy 44.8 28 0.0006 31.2 3.7 37 199-237 294-330 (460)
316 PF01494 FAD_binding_3: FAD bi 44.6 25 0.00054 29.7 3.3 36 204-239 291-329 (356)
317 TIGR00136 gidA glucose-inhibit 44.6 27 0.00058 32.7 3.5 41 197-240 350-391 (617)
318 PRK06452 sdhA succinate dehydr 44.5 34 0.00075 31.7 4.3 41 200-240 356-404 (566)
319 PRK12844 3-ketosteroid-delta-1 44.2 23 0.00051 32.7 3.2 39 200-238 504-549 (557)
320 PRK06370 mercuric reductase; V 43.9 31 0.00068 30.9 3.9 38 198-237 296-333 (463)
321 PRK08641 sdhA succinate dehydr 43.9 35 0.00076 31.8 4.3 42 199-240 364-411 (589)
322 PRK06481 fumarate reductase fl 43.8 28 0.00061 31.7 3.6 40 200-239 458-503 (506)
323 COG1251 NirB NAD(P)H-nitrite r 43.3 25 0.00055 33.3 3.2 42 15-56 201-242 (793)
324 PRK06467 dihydrolipoamide dehy 43.1 27 0.00058 31.5 3.3 37 199-237 300-336 (471)
325 PRK12839 hypothetical protein; 43.0 80 0.0017 29.4 6.5 38 200-237 522-566 (572)
326 PRK07121 hypothetical protein; 42.9 33 0.00071 31.1 3.9 38 200-237 446-489 (492)
327 PRK12835 3-ketosteroid-delta-1 42.8 36 0.00078 31.7 4.2 43 15-57 227-275 (584)
328 PRK06263 sdhA succinate dehydr 42.8 40 0.00086 31.1 4.5 41 200-240 358-404 (543)
329 COG0445 GidA Flavin-dependent 42.6 18 0.00038 33.2 2.0 37 21-57 120-158 (621)
330 PRK06416 dihydrolipoamide dehy 42.6 29 0.00063 31.1 3.5 37 199-237 297-333 (462)
331 TIGR01316 gltA glutamate synth 42.5 92 0.002 27.9 6.7 43 13-55 321-385 (449)
332 TIGR01812 sdhA_frdA_Gneg succi 42.3 37 0.0008 31.4 4.2 40 201-240 357-403 (566)
333 PRK12831 putative oxidoreducta 42.2 1.1E+02 0.0025 27.5 7.2 46 10-55 327-394 (464)
334 TIGR01350 lipoamide_DH dihydro 42.0 31 0.00068 30.8 3.6 36 200-237 296-331 (461)
335 TIGR02053 MerA mercuric reduct 40.9 34 0.00074 30.6 3.7 38 198-237 291-328 (463)
336 PTZ00139 Succinate dehydrogena 40.7 33 0.00072 32.2 3.6 40 200-239 399-445 (617)
337 PRK06327 dihydrolipoamide dehy 40.7 36 0.00078 30.7 3.8 37 199-237 310-346 (475)
338 PLN02661 Putative thiazole syn 40.6 97 0.0021 26.9 6.1 48 7-54 177-241 (357)
339 PRK08958 sdhA succinate dehydr 40.5 41 0.00088 31.4 4.2 50 7-56 144-205 (588)
340 PRK06069 sdhA succinate dehydr 40.4 34 0.00074 31.8 3.7 40 201-240 369-415 (577)
341 PRK07846 mycothione reductase; 40.3 38 0.00082 30.4 3.8 36 199-236 288-323 (451)
342 PRK06134 putative FAD-binding 40.2 28 0.0006 32.4 3.1 39 200-238 525-570 (581)
343 TIGR03452 mycothione_red mycot 40.1 36 0.00078 30.5 3.7 37 199-237 291-327 (452)
344 PRK08958 sdhA succinate dehydr 39.5 1.1E+02 0.0023 28.7 6.7 40 201-240 378-424 (588)
345 TIGR00137 gid_trmFO tRNA:m(5)U 39.4 40 0.00086 30.1 3.7 41 196-239 321-362 (433)
346 TIGR01438 TGR thioredoxin and 39.0 44 0.00096 30.3 4.1 38 199-237 306-343 (484)
347 PRK07845 flavoprotein disulfid 38.8 39 0.00084 30.4 3.7 37 199-237 300-336 (466)
348 PRK06115 dihydrolipoamide dehy 38.8 37 0.00079 30.6 3.5 37 199-237 301-337 (466)
349 PLN02546 glutathione reductase 38.6 37 0.00081 31.4 3.6 37 199-237 376-412 (558)
350 PRK05675 sdhA succinate dehydr 38.5 49 0.0011 30.7 4.4 40 201-240 360-406 (570)
351 PRK09231 fumarate reductase fl 38.5 39 0.00084 31.5 3.7 41 200-240 368-415 (582)
352 PRK12834 putative FAD-binding 38.4 36 0.00078 31.4 3.5 42 15-56 166-226 (549)
353 PF03486 HI0933_like: HI0933-l 37.9 30 0.00066 30.6 2.8 34 200-233 372-408 (409)
354 TIGR01318 gltD_gamma_fam gluta 37.9 1.4E+02 0.0031 26.8 7.2 48 8-55 327-396 (467)
355 PRK12771 putative glutamate sy 37.6 1.4E+02 0.0031 27.6 7.2 49 7-55 311-378 (564)
356 PLN00128 Succinate dehydrogena 37.4 1E+02 0.0022 29.1 6.3 42 15-56 201-249 (635)
357 COG1249 Lpd Pyruvate/2-oxoglut 37.4 48 0.001 29.8 4.0 36 200-237 299-334 (454)
358 PRK12839 hypothetical protein; 37.4 41 0.00089 31.2 3.7 42 15-56 228-275 (572)
359 PRK05945 sdhA succinate dehydr 36.8 52 0.0011 30.6 4.3 41 200-240 367-414 (575)
360 TIGR03143 AhpF_homolog putativ 36.7 1.2E+02 0.0025 28.2 6.5 40 15-56 74-113 (555)
361 TIGR02360 pbenz_hydroxyl 4-hyd 36.0 57 0.0012 28.5 4.2 43 15-57 117-163 (390)
362 PRK07803 sdhA succinate dehydr 36.0 48 0.001 31.2 3.9 40 201-240 403-448 (626)
363 PRK06175 L-aspartate oxidase; 35.9 46 0.00099 29.7 3.6 40 200-239 341-387 (433)
364 TIGR01372 soxA sarcosine oxida 35.9 99 0.0021 31.0 6.2 48 8-55 357-409 (985)
365 PRK07843 3-ketosteroid-delta-1 35.7 43 0.00092 31.0 3.5 38 200-237 511-555 (557)
366 TIGR01372 soxA sarcosine oxida 35.5 51 0.0011 32.9 4.2 36 203-241 438-473 (985)
367 PRK07057 sdhA succinate dehydr 35.4 1.4E+02 0.0031 27.9 6.9 50 7-56 149-210 (591)
368 COG0029 NadB Aspartate oxidase 35.1 64 0.0014 29.2 4.3 49 6-54 137-193 (518)
369 KOG3189 Phosphomannomutase [Li 34.9 1.5E+02 0.0033 23.5 5.7 67 139-216 148-219 (252)
370 PRK06854 adenylylsulfate reduc 34.8 69 0.0015 30.1 4.7 41 16-56 148-194 (608)
371 PRK07512 L-aspartate oxidase; 34.7 56 0.0012 29.9 4.1 40 200-239 351-397 (513)
372 PRK06912 acoL dihydrolipoamide 34.5 49 0.0011 29.7 3.6 36 199-236 293-328 (458)
373 TIGR01811 sdhA_Bsu succinate d 34.5 58 0.0012 30.5 4.2 40 200-239 380-425 (603)
374 KOG2844 Dimethylglycine dehydr 34.2 75 0.0016 30.1 4.6 42 15-57 201-243 (856)
375 PRK07045 putative monooxygenas 34.1 60 0.0013 28.2 4.1 35 203-237 284-321 (388)
376 PRK12837 3-ketosteroid-delta-1 33.9 36 0.00077 31.1 2.7 37 200-236 466-509 (513)
377 PRK08275 putative oxidoreducta 33.7 51 0.0011 30.5 3.7 42 15-56 151-199 (554)
378 PTZ00306 NADH-dependent fumara 33.6 50 0.0011 33.7 3.8 42 15-56 561-619 (1167)
379 TIGR00551 nadB L-aspartate oxi 33.6 53 0.0011 29.8 3.7 39 200-238 343-388 (488)
380 PRK12770 putative glutamate sy 33.5 1.2E+02 0.0027 25.9 5.9 48 8-55 216-284 (352)
381 COG3486 IucD Lysine/ornithine 33.1 55 0.0012 28.9 3.5 38 17-54 113-154 (436)
382 PTZ00052 thioredoxin reductase 32.7 65 0.0014 29.3 4.2 37 200-237 304-340 (499)
383 PRK09077 L-aspartate oxidase; 32.5 58 0.0013 30.0 3.8 40 200-239 363-409 (536)
384 PRK09077 L-aspartate oxidase; 32.1 1.4E+02 0.003 27.5 6.2 49 8-56 144-206 (536)
385 PRK07190 hypothetical protein; 31.9 66 0.0014 29.2 4.0 33 204-236 275-310 (487)
386 COG3634 AhpF Alkyl hydroperoxi 31.8 99 0.0022 26.9 4.7 71 16-99 281-354 (520)
387 KOG2415 Electron transfer flav 31.8 33 0.00072 30.5 1.9 23 220-242 403-425 (621)
388 PRK09853 putative selenate red 31.7 1.3E+02 0.0027 30.3 6.0 49 7-56 713-778 (1019)
389 PF03275 GLF: UDP-galactopyran 31.7 5.5 0.00012 31.4 -2.5 48 2-59 46-95 (204)
390 PRK05329 anaerobic glycerol-3- 31.6 54 0.0012 29.2 3.3 36 203-238 380-419 (422)
391 PLN02815 L-aspartate oxidase 31.2 1.2E+02 0.0026 28.4 5.7 40 200-239 387-433 (594)
392 TIGR01176 fum_red_Fp fumarate 31.2 65 0.0014 30.0 4.0 40 200-239 367-413 (580)
393 PF05862 IceA2: Helicobacter p 31.1 1.2E+02 0.0026 18.4 3.6 26 20-45 24-49 (59)
394 PRK02289 4-oxalocrotonate taut 30.8 92 0.002 18.9 3.4 36 145-180 17-52 (60)
395 PRK12845 3-ketosteroid-delta-1 30.7 53 0.0012 30.5 3.3 37 200-236 519-562 (564)
396 PRK06847 hypothetical protein; 30.7 60 0.0013 27.9 3.5 34 203-236 281-317 (375)
397 PRK05976 dihydrolipoamide dehy 30.1 65 0.0014 29.0 3.7 36 199-236 306-341 (472)
398 KOG0042 Glycerol-3-phosphate d 30.0 3E+02 0.0066 25.6 7.5 126 17-161 240-377 (680)
399 PRK07057 sdhA succinate dehydr 30.0 68 0.0015 30.0 3.9 39 201-239 381-426 (591)
400 PRK05192 tRNA uridine 5-carbox 29.6 2.3E+02 0.005 26.8 7.0 37 196-235 351-388 (618)
401 PF02772 S-AdoMet_synt_M: S-ad 29.3 29 0.00064 24.8 1.1 49 7-55 28-79 (120)
402 PRK08010 pyridine nucleotide-d 28.6 73 0.0016 28.3 3.7 36 199-236 280-315 (441)
403 KOG0404 Thioredoxin reductase 28.6 92 0.002 25.3 3.7 49 7-57 71-124 (322)
404 PRK08071 L-aspartate oxidase; 28.6 75 0.0016 29.0 3.8 39 200-238 342-387 (510)
405 TIGR03315 Se_ygfK putative sel 27.9 1.7E+02 0.0037 29.4 6.2 48 7-56 711-775 (1012)
406 PRK12769 putative oxidoreducta 27.7 2.6E+02 0.0057 26.5 7.4 45 11-55 516-582 (654)
407 PRK12809 putative oxidoreducta 27.0 2.5E+02 0.0055 26.5 7.1 49 7-55 495-565 (639)
408 PRK07538 hypothetical protein; 24.9 1E+02 0.0022 27.1 3.9 33 204-236 297-332 (413)
409 TIGR03378 glycerol3P_GlpB glyc 24.7 57 0.0012 29.0 2.2 35 202-236 381-419 (419)
410 PTZ00058 glutathione reductase 24.3 1E+02 0.0022 28.6 3.9 40 198-237 360-431 (561)
411 PRK06753 hypothetical protein; 23.9 1E+02 0.0022 26.5 3.7 32 204-235 270-304 (373)
412 COG4573 GatZ Predicted tagatos 23.8 85 0.0019 26.9 2.9 61 179-241 54-118 (426)
413 KOG1346 Programmed cell death 23.7 83 0.0018 28.1 2.9 39 15-55 271-309 (659)
414 COG1206 Gid NAD(FAD)-utilizing 23.2 78 0.0017 27.3 2.6 27 203-232 334-360 (439)
415 PRK08163 salicylate hydroxylas 23.0 95 0.0021 26.9 3.3 33 204-236 286-321 (396)
416 PF11423 Repressor_Mnt: Regula 22.5 87 0.0019 16.1 1.7 24 137-160 4-27 (30)
417 PRK07573 sdhA succinate dehydr 22.4 1.4E+02 0.003 28.3 4.5 35 200-234 416-456 (640)
418 PRK13800 putative oxidoreducta 21.6 1.1E+02 0.0025 30.2 3.9 40 199-239 370-409 (897)
419 PF10387 DUF2442: Protein of u 21.3 1.6E+02 0.0034 18.9 3.4 23 24-46 1-24 (79)
420 PLN02815 L-aspartate oxidase 21.1 1.4E+02 0.0031 27.9 4.2 42 15-56 170-221 (594)
421 PRK08641 sdhA succinate dehydr 21.1 3.2E+02 0.007 25.5 6.5 41 16-56 152-199 (589)
422 PF03550 LolB: Outer membrane 20.8 1.6E+02 0.0034 22.0 3.7 27 20-46 41-67 (157)
423 PRK08401 L-aspartate oxidase; 20.8 1.3E+02 0.0029 27.0 3.9 38 200-237 320-364 (466)
424 PF02736 Myosin_N: Myosin N-te 20.4 1.8E+02 0.0038 16.3 3.2 18 28-45 20-37 (42)
425 COG4529 Uncharacterized protei 20.4 2.6E+02 0.0056 25.4 5.4 35 19-53 124-160 (474)
426 PRK06834 hypothetical protein; 20.1 1.3E+02 0.0028 27.3 3.7 33 203-235 264-299 (488)
No 1
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=5.6e-37 Score=270.42 Aligned_cols=239 Identities=82% Similarity=1.313 Sum_probs=210.9
Q ss_pred CCCChHHHHHHHhcCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHhhc
Q 024393 1 MVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 80 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~ 80 (268)
+.+||++|+++|+++++|++|++|++|...+++|.|++.+|+++.||+||+|+|+..+++..+.|.|+||+.++++++++
T Consensus 196 ~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~ 275 (435)
T PLN02268 196 MVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDL 275 (435)
T ss_pred ecCCHHHHHHHHhccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhC
Confidence 35799999999999999999999999999988999999888889999999999999997655778899999999999999
Q ss_pred CCccccEEEEEeCCCCCCCCccceeecCCCCceeEEEeccccCCccEEEEEeccchHHHHhcCCHHHHHHHHHHHHHHhc
Q 024393 81 GVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL 160 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~ 160 (268)
.|++..|+.+.|+++||++...+|.+.+....+.++.+.....+.+++++++.+..+..+.+++++++++.++++|.++|
T Consensus 276 ~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~ 355 (435)
T PLN02268 276 GVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKML 355 (435)
T ss_pred CccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999876677776554344555555444466778888888888888999999999999999999999
Q ss_pred CCCCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHH
Q 024393 161 PDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 161 p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
|...+|..+.+++|.+++|+.|+|....||.....++.+++|+++|||||++++..+.|+|+||+.||++||++|++.|
T Consensus 356 ~~~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 356 PDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCCCCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 9766789999999999999999999888887666778889999999999999998888999999999999999998754
No 2
>PLN03000 amine oxidase
Probab=100.00 E-value=4.4e-36 Score=274.25 Aligned_cols=241 Identities=36% Similarity=0.553 Sum_probs=209.7
Q ss_pred CCCChHHHHHHHhcCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHhhc
Q 024393 1 MVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 80 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~ 80 (268)
+.|||++|+++|++.++|+++++|++|+..+++|.|++.+ +++.||+||+|+|+.+++...+.|.|+||+.++++++++
T Consensus 376 v~GG~~~LieaLa~~L~I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL 454 (881)
T PLN03000 376 LPGGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRL 454 (881)
T ss_pred eCCCHHHHHHHHHhhCCcccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcC
Confidence 4699999999999999999999999999998899987654 589999999999999998667899999999999999999
Q ss_pred CCccccEEEEEeCCCCCCCC-ccceeecCCCC---ceeEEEeccccCCccEEEEEeccchHHHHhcCCHHHHHHHHHHHH
Q 024393 81 GVGIENKIIMHFDKVFWPNV-EFLGVVSDTSY---GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQL 156 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~---~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~~l 156 (268)
.|+...|+++.|+++||+.. +.+|.+..... ....+++.....+.++|++|+.++.+..+..++++++.+.++++|
T Consensus 455 ~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~L 534 (881)
T PLN03000 455 GFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHIL 534 (881)
T ss_pred CCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHH
Confidence 99999999999999999654 66777753321 233445554446677888999999999999999999999999999
Q ss_pred HHhcCC----CCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCC--CCeeeeecccCCCCCccchhhHHHHHH
Q 024393 157 KKILPD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLM 230 (268)
Q Consensus 157 ~~~~p~----~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~--~~l~~aG~~~~~~~~g~~~gA~~Sg~~ 230 (268)
.++|+. ..+|+.+.+++|..++|++|+|.+..+|.....+..+++|+ ++|||||++++..+.|+|+||+.||.+
T Consensus 535 rkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlR 614 (881)
T PLN03000 535 RGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLR 614 (881)
T ss_pred HHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHH
Confidence 999973 35788999999999999999999988988777778888885 589999999998888999999999999
Q ss_pred HHHHHHHHHHHH
Q 024393 231 AAEDCRMRVLER 242 (268)
Q Consensus 231 aa~~i~~~l~~~ 242 (268)
||++|++.+..+
T Consensus 615 AA~eIl~~l~~~ 626 (881)
T PLN03000 615 EAANMAQSAKAR 626 (881)
T ss_pred HHHHHHHHhhhc
Confidence 999999877665
No 3
>PLN02976 amine oxidase
Probab=100.00 E-value=2.5e-35 Score=276.20 Aligned_cols=241 Identities=41% Similarity=0.703 Sum_probs=207.1
Q ss_pred CCCChHHHHHHHhcCCceeeCcceeEEEEc----------CCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCc
Q 024393 1 MVRGYLPVINTLAKGLDIRLGHRVTKITRH----------YIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLP 70 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l~i~~~~~V~~I~~~----------~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~ 70 (268)
++|||++|+++|++.+.|+||++|++|... +++|.|++.+|+++.||+||+|+|+..|....+.|.|+||
T Consensus 931 IkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLP 1010 (1713)
T PLN02976 931 IKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLP 1010 (1713)
T ss_pred eCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCccc
Confidence 479999999999999999999999999984 3568899999999999999999999999755578999999
Q ss_pred HHHHHHHhhcCCccccEEEEEeCCCCCCC-CccceeecCC---CCceeEEEeccccCCccEEEEEeccchHHHHhcCCHH
Q 024393 71 DWKEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDT---SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDE 146 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~---~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~ 146 (268)
..++++++++.|+...|+++.|+++||+. ..++|..... ...+..+++...+.+.++|+.++.+..+..+..++++
T Consensus 1011 e~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aAreiEsLSDE 1090 (1713)
T PLN02976 1011 DWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQSMSSS 1090 (1713)
T ss_pred HHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhHHHHhhCCHH
Confidence 99999999999999999999999999965 4566654321 1112334444445667789998889888888899999
Q ss_pred HHHHHHHHHHHHhcCC--CCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCC-eeeeecccCCCCCccchh
Q 024393 147 AAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHG 223 (268)
Q Consensus 147 e~~~~i~~~l~~~~p~--~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~-l~~aG~~~~~~~~g~~~g 223 (268)
++.+.+++.|.++||. .+.|..+.+++|.+++|+.|+|.+..||.....+..+..|+++ |||||++++..|+|+|+|
T Consensus 1091 E~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHG 1170 (1713)
T PLN02976 1091 DHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGG 1170 (1713)
T ss_pred HHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHH
Confidence 9999999999999995 3578999999999999999999888888776667778899866 999999999988999999
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 024393 224 AFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 224 A~~Sg~~aa~~i~~~l~~ 241 (268)
|+.||.++|++|+..+..
T Consensus 1171 AIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1171 AMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999987654
No 4
>PLN02676 polyamine oxidase
Probab=100.00 E-value=4.3e-35 Score=259.79 Aligned_cols=240 Identities=31% Similarity=0.513 Sum_probs=199.7
Q ss_pred CCChHHHHHHHhcCC-----------ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCc
Q 024393 2 VRGYLPVINTLAKGL-----------DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLP 70 (268)
Q Consensus 2 ~gG~~~l~~~l~~~l-----------~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~ 70 (268)
+||+++|+++|++.+ +|++|++|++|+.++++|.|++.+|+++.||+||+|+|+..|....+.|.|+||
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP 299 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP 299 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCC
Confidence 589999999999854 499999999999999999999999999999999999999999765589999999
Q ss_pred HHHHHHHhhcCCccccEEEEEeCCCCCCCC-ccceeec-CCCCce-eEEEecc-ccCCccEEEEEeccchHHHHhcCCHH
Q 024393 71 DWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVS-DTSYGC-SYFLNLH-KATGHCVLVYMPAGQLARDIEKMSDE 146 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~-~~~~~~~-~~~g~~~l~~~~~~~~~~~~~~~~~~ 146 (268)
..++++++++.++...|+++.|+++||++. ...+... ..+... ..+.... .+.+.+++++++.++.+..+..++++
T Consensus 300 ~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e 379 (487)
T PLN02676 300 DWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDS 379 (487)
T ss_pred HHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHH
Confidence 999999999999999999999999999752 1111111 111111 1111111 12344577788888888888899999
Q ss_pred HHHHHHHHHHHHhcCC-CCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecccCCCCCccchhhH
Q 024393 147 AAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAF 225 (268)
Q Consensus 147 e~~~~i~~~l~~~~p~-~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~~gA~ 225 (268)
++++.++++|+++||. ...|..+..++|.+++|+.|+|..+.||......+.+++|+++|||||++++..+.|+|+||+
T Consensus 380 ~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~ 459 (487)
T PLN02676 380 ETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAY 459 (487)
T ss_pred HHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHH
Confidence 9999999999999985 567889999999999999999998888887777788899999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 024393 226 STGLMAAEDCRMRVLE 241 (268)
Q Consensus 226 ~Sg~~aa~~i~~~l~~ 241 (268)
.||.+||++|++.++.
T Consensus 460 ~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 460 LAGIDTANDLLECIKK 475 (487)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999986543
No 5
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=1.3e-34 Score=264.70 Aligned_cols=242 Identities=34% Similarity=0.551 Sum_probs=207.1
Q ss_pred CCCChHHHHHHHhcCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHhhc
Q 024393 1 MVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 80 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~ 80 (268)
+.|||++|+++|++.++|++|++|++|...+++|.| +.+|+++.||+||+|+|+.++....+.|.|+||..+.++++++
T Consensus 432 v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l 510 (808)
T PLN02328 432 IPGGNDTFVRELAKDLPIFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRL 510 (808)
T ss_pred ECCcHHHHHHHHHhhCCcccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcC
Confidence 469999999999999999999999999998888877 5578899999999999999998656788999999999999999
Q ss_pred CCccccEEEEEeCCCCCCC-CccceeecCCC---CceeEEEeccccCCccEEEEEeccchHHHHhcCCHHHHHHHHHHHH
Q 024393 81 GVGIENKIIMHFDKVFWPN-VEFLGVVSDTS---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQL 156 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~---~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~~l 156 (268)
.|++..|+++.|+++||.. .+.+|.+..+. ..+..+++.....+.++|+.|+.++.+..+..++++++++.++++|
T Consensus 511 ~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~L 590 (808)
T PLN02328 511 GYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQIL 590 (808)
T ss_pred CCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999964 45667664321 1223445544345667888999999999999999999999999999
Q ss_pred HHhcCC----CCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCC--CCeeeeecccCCCCCccchhhHHHHHH
Q 024393 157 KKILPD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLM 230 (268)
Q Consensus 157 ~~~~p~----~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~--~~l~~aG~~~~~~~~g~~~gA~~Sg~~ 230 (268)
.++|+. ...|..+.+++|.+++|+.|+|....+|.....++.+..|+ ++|||||++++..++|+|+||+.||.+
T Consensus 591 r~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlR 670 (808)
T PLN02328 591 RGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMR 670 (808)
T ss_pred HHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHH
Confidence 999973 34788999999999999999999888887655667778875 699999999998888999999999999
Q ss_pred HHHHHHHHHHHHh
Q 024393 231 AAEDCRMRVLERY 243 (268)
Q Consensus 231 aa~~i~~~l~~~~ 243 (268)
+|++|+..++.+-
T Consensus 671 AA~eIl~~~~~~~ 683 (808)
T PLN02328 671 EAANILRVARRRS 683 (808)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999877763
No 6
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=2.2e-34 Score=262.18 Aligned_cols=242 Identities=38% Similarity=0.586 Sum_probs=202.3
Q ss_pred CCCChHHHHHHHhcCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHhhc
Q 024393 1 MVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 80 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~ 80 (268)
+.|||++|+++|+++++|++|++|++|+..+++|.|++ +++++.||+||+|+|+.++.+..+.|.|+||+.++++++++
T Consensus 352 i~GG~~~Li~aLA~~L~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL 430 (738)
T PLN02529 352 LAGGNWRLINALCEGVPIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRL 430 (738)
T ss_pred ECCcHHHHHHHHHhcCCEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcC
Confidence 46999999999999999999999999999998888875 45689999999999999998656789999999999999999
Q ss_pred CCccccEEEEEeCCCCCCC-CccceeecCC---CCceeEEEeccccCCccEEEEEeccchHHHHhcCCHHHHHHHHHHHH
Q 024393 81 GVGIENKIIMHFDKVFWPN-VEFLGVVSDT---SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQL 156 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~---~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~~l 156 (268)
.|++..|+++.|+++||+. .+.+|.+... ......+.+.+.+.+.+++++++.++.+..+..++++++++.++++|
T Consensus 431 ~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L 510 (738)
T PLN02529 431 GFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVL 510 (738)
T ss_pred CCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999965 3566766432 11223333433334556888999998888899999999999999999
Q ss_pred HHhcCC----CCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCC-CCCeeeeecccCCCCCccchhhHHHHHHH
Q 024393 157 KKILPD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIP-VDNLFFAGEATSMSYPGSVHGAFSTGLMA 231 (268)
Q Consensus 157 ~~~~p~----~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p-~~~l~~aG~~~~~~~~g~~~gA~~Sg~~a 231 (268)
.++|+. .++|..+..++|.+++|+.|+|....++.....+..+..| .++|||||++++..++|+|+||+.||.+|
T Consensus 511 ~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RA 590 (738)
T PLN02529 511 RGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLRE 590 (738)
T ss_pred HHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHH
Confidence 999973 2478889999999999999999987776544334566677 48999999999998899999999999999
Q ss_pred HHHHHHHHHHHh
Q 024393 232 AEDCRMRVLERY 243 (268)
Q Consensus 232 a~~i~~~l~~~~ 243 (268)
|+.|++.+..+.
T Consensus 591 A~eIl~~l~~~~ 602 (738)
T PLN02529 591 ASRILHVARSQQ 602 (738)
T ss_pred HHHHHHHHhhhh
Confidence 999998765543
No 7
>PLN02568 polyamine oxidase
Probab=100.00 E-value=5.4e-32 Score=241.79 Aligned_cols=239 Identities=37% Similarity=0.496 Sum_probs=196.5
Q ss_pred CCCChHHHHHHHhcCCc---eeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcC----cccccCCCcHHH
Q 024393 1 MVRGYLPVINTLAKGLD---IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR----TIKFEPRLPDWK 73 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l~---i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~----~~~~~p~l~~~~ 73 (268)
+.||+++|+++|++.+. |++|++|++|+..+++|.|++.+|+++.||+||+|+|+..|... .+.|.|+||..+
T Consensus 237 i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k 316 (539)
T PLN02568 237 IAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFK 316 (539)
T ss_pred ECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHH
Confidence 47999999999999995 99999999999998899999999989999999999999999752 257999999999
Q ss_pred HHHHhhcCCccccEEEEEeCCCCCCCC------ccceeecCC-C------CceeEEE---eccc-cCCccEEEEEeccch
Q 024393 74 EAAIDDLGVGIENKIIMHFDKVFWPNV------EFLGVVSDT-S------YGCSYFL---NLHK-ATGHCVLVYMPAGQL 136 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~-~------~~~~~~~---~~~~-~~g~~~l~~~~~~~~ 136 (268)
+++++++.++...|+++.|+++||... +....+... + ....++. +... ..+.++|+.++.++.
T Consensus 317 ~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~ 396 (539)
T PLN02568 317 TDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKE 396 (539)
T ss_pred HHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEeccHH
Confidence 999999999999999999999988431 111222111 0 0001110 1111 135678999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCC-----------------------CCCcEEEEcccCCCcCCCcccCcCCCCCCh
Q 024393 137 ARDIEKMSDEAAANFAFTQLKKILPDA-----------------------SSPIQYLVSHWGTDANSLGSYSYDTVGKSH 193 (268)
Q Consensus 137 ~~~~~~~~~~e~~~~i~~~l~~~~p~~-----------------------~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~ 193 (268)
+..+..++++++.+.+++.|.++||.. ..|..+..++|.+++|+.|+|.+..||...
T Consensus 397 A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~ 476 (539)
T PLN02568 397 ALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSG 476 (539)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCCh
Confidence 999999999999999999999999741 257888999999999999999988888876
Q ss_pred HHHHHhcCCCC-------------CeeeeecccCCCCCccchhhHHHHHHHHHHHHHHH
Q 024393 194 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 194 ~~~~~~~~p~~-------------~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
..+..++.|++ +|||||++++..+.|+|+||+.||+++|++|++..
T Consensus 477 ~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 477 DDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHY 535 (539)
T ss_pred hHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 66677887864 79999999999889999999999999999998754
No 8
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-33 Score=234.23 Aligned_cols=237 Identities=29% Similarity=0.428 Sum_probs=201.4
Q ss_pred CCChHHHHHHHhcCC--ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHhh
Q 024393 2 VRGYLPVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 79 (268)
Q Consensus 2 ~gG~~~l~~~l~~~l--~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~ 79 (268)
.|||+.|++++++.+ .|.++++|.+|...+++|+|++.+..++.+|+||||+|+..+. .+.|.|.+++.++++++.
T Consensus 205 ~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~~a~~~ 282 (450)
T COG1231 205 LGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYKQAAKG 282 (450)
T ss_pred CccHHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHHHHhcC
Confidence 399999999999998 5999999999999999999999885689999999999999987 578889999999999999
Q ss_pred cCCccccEEEEEeCCCCCCCCccceeecCCCCc--eeEEEeccccCCccEEEE-EeccchHHHHhcCCHHHHHHHHHHHH
Q 024393 80 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYG--CSYFLNLHKATGHCVLVY-MPAGQLARDIEKMSDEAAANFAFTQL 156 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~g~~~l~~-~~~~~~~~~~~~~~~~e~~~~i~~~l 156 (268)
+.|++.+|+.+.|+++||++.+..+...-++.. ...+++....+|..++.. |+.++.+..|..++++++++.++..+
T Consensus 283 ~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l 362 (450)
T COG1231 283 VPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARL 362 (450)
T ss_pred cCcchheeeeeecCchhhhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhH
Confidence 999999999999999999877733333222222 333444322356677775 67799999999999999999999999
Q ss_pred HHhcCC-CCCCcEE-EEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHH
Q 024393 157 KKILPD-ASSPIQY-LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 234 (268)
Q Consensus 157 ~~~~p~-~~~~~~~-~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~ 234 (268)
.++||+ ..++.+. ...+|.+++++.|++..+.+++..++.+.+..|.++|||||....+.++||++||++||.+||.+
T Consensus 363 ~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~e 442 (450)
T COG1231 363 AKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAE 442 (450)
T ss_pred hhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHH
Confidence 999995 5566666 88999999999998888889988888888899999999999777777889999999999999999
Q ss_pred HHHHHH
Q 024393 235 CRMRVL 240 (268)
Q Consensus 235 i~~~l~ 240 (268)
|...+.
T Consensus 443 i~~~l~ 448 (450)
T COG1231 443 IHALLS 448 (450)
T ss_pred HHHhhc
Confidence 987654
No 9
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=5e-30 Score=225.60 Aligned_cols=248 Identities=48% Similarity=0.803 Sum_probs=214.1
Q ss_pred CCCChHHHHHHHhcCCceeeCcceeEEEEcCCc-eEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHhh
Q 024393 1 MVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 79 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~ 79 (268)
+.+|+..+..+|+.+++|+++++|.+|...++. +.+++.++..+.+|+||+|+|+.++....+.|.|+||..+.+++++
T Consensus 214 ~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~ 293 (501)
T KOG0029|consen 214 MKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDR 293 (501)
T ss_pred hhCCccHHHhhcCCCcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHh
Confidence 468999999999999999999999999988776 4566566666999999999999999876789999999999999999
Q ss_pred cCCccccEEEEEeCCCCC-CCCccceeecCCCCcee--EEEeccccCCccEEEEEeccchHHHHhcCCHHHHHHHHHHHH
Q 024393 80 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQL 156 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~--~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~~l 156 (268)
+..+...|+.+.|++.|| .+.+++|.......... .|++..+-.+.++++++..+..+..+..++++++++.++..|
T Consensus 294 lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l 373 (501)
T KOG0029|consen 294 LGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLL 373 (501)
T ss_pred cCCCceeEEEEEeccccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999 66788888876544333 455655556777888888888888999999999999999999
Q ss_pred HHhcC--CCCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCC-eeeeecccCCCCCccchhhHHHHHHHHH
Q 024393 157 KKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAE 233 (268)
Q Consensus 157 ~~~~p--~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~-l~~aG~~~~~~~~g~~~gA~~Sg~~aa~ 233 (268)
+++|+ ...+|.++.+++|..++++.|+|.+..++.....++.++.|+.+ +||||+.+...+.|+|+||+.||.++|.
T Consensus 374 ~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~ 453 (501)
T KOG0029|consen 374 RKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAAS 453 (501)
T ss_pred HHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHH
Confidence 99999 46789999999999999999999987776655556788889877 9999999999889999999999999999
Q ss_pred HHHHHHHH--HhCCCCC
Q 024393 234 DCRMRVLE--RYGELDL 248 (268)
Q Consensus 234 ~i~~~l~~--~~~~~~~ 248 (268)
.|+..+.. ..+.+..
T Consensus 454 ~i~~~~~~~~~~~~~~~ 470 (501)
T KOG0029|consen 454 DILDSLIEILRAGALRR 470 (501)
T ss_pred HHHHHHHhhhhcccccc
Confidence 99998884 4454433
No 10
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.97 E-value=3.8e-29 Score=219.91 Aligned_cols=232 Identities=37% Similarity=0.558 Sum_probs=186.0
Q ss_pred CChHHHHHHHhc--CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHhhc
Q 024393 3 RGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 80 (268)
Q Consensus 3 gG~~~l~~~l~~--~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~ 80 (268)
|++..+...+.+ +.+|++|++|++|+.+++++.|.+.+|++++||+||+|+|++.+.. +.+.|.++...+++++++
T Consensus 209 g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~ 286 (450)
T PF01593_consen 209 GGLSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENL 286 (450)
T ss_dssp TTTHHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTE
T ss_pred cchhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhccccccccccccccc
Confidence 455555555555 3479999999999999999999999999999999999999999874 567899999888888999
Q ss_pred CCccccEEEEEeCCCCCCCC-ccceeecCCC-Cce--eEEEecccc-CCccEEEEEeccchHHHHhcCCHHHHHHHHHHH
Q 024393 81 GVGIENKIIMHFDKVFWPNV-EFLGVVSDTS-YGC--SYFLNLHKA-TGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ 155 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~-~~~--~~~~~~~~~-~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~~ 155 (268)
.+.+..++++.|+.++|... ...+.+..+. ... ....+...+ .+..+++.++.++....+.+++++++++.++++
T Consensus 287 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~ 366 (450)
T PF01593_consen 287 PYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDD 366 (450)
T ss_dssp EEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCcceeEEEeeecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHH
Confidence 99999999999999999665 4566654433 122 222222222 245678888888777889999999999999999
Q ss_pred HHHhcCC--CCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCC-CCeeeeecccCCCCCccchhhHHHHHHHH
Q 024393 156 LKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAA 232 (268)
Q Consensus 156 l~~~~p~--~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa 232 (268)
|++++|. ..+|.++..++|.++++..++|....++.....++.+++|+ +|||||||++++++.|+++||+.||.+||
T Consensus 367 L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA 446 (450)
T PF01593_consen 367 LRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAA 446 (450)
T ss_dssp HHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHH
Confidence 9999994 45677888999999999988888776655434678889998 69999999999977789999999999999
Q ss_pred HHHH
Q 024393 233 EDCR 236 (268)
Q Consensus 233 ~~i~ 236 (268)
+.|+
T Consensus 447 ~~il 450 (450)
T PF01593_consen 447 EEIL 450 (450)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.93 E-value=1.6e-24 Score=192.68 Aligned_cols=226 Identities=19% Similarity=0.262 Sum_probs=172.7
Q ss_pred CCCChHHHHHHHhcCC---ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHH
Q 024393 1 MVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 77 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~ 77 (268)
++|||++|+++|++.+ +|+++++|++|+.++++|.|++.+|+++.||+||+|+|++++..+ -|++++...+++
T Consensus 220 ~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~l----l~~~~~~~~~~l 295 (462)
T TIGR00562 220 LATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGL----LSELSNSASSHL 295 (462)
T ss_pred cchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHH----hcccCHHHHHHH
Confidence 4799999999999876 499999999999988889998888888999999999999998643 255777778888
Q ss_pred hhcCCccccEEEEEeCCCCCCC-CccceeecCCCC---ceeE-EEe----ccccCCccEEEEEeccchHHHHhcCCHHHH
Q 024393 78 DDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTSY---GCSY-FLN----LHKATGHCVLVYMPAGQLARDIEKMSDEAA 148 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~---~~~~-~~~----~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~ 148 (268)
+++.|.++.++.+.|++++|.. ...+|++.+... ...+ +.+ ...|.+..++++++.+.....+.+++++++
T Consensus 296 ~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~ 375 (462)
T TIGR00562 296 DKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEI 375 (462)
T ss_pred hcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHH
Confidence 9999999999999999888853 344666654321 1222 221 123456667778887766677888999999
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcccCCCcCCCcccCcCCCCCCh---HHHHHhcCCCCCeeeeecccCCCCCccchhhH
Q 024393 149 ANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH---DLYERLRIPVDNLFFAGEATSMSYPGSVHGAF 225 (268)
Q Consensus 149 ~~~i~~~l~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~---~~~~~~~~p~~~l~~aG~~~~~~~~g~~~gA~ 225 (268)
++.++++|.++++...+|....+++|.. +++.+.+++.. ..++.+..+.++||+||+|+.. .++++|+
T Consensus 376 ~~~v~~~L~~~~gi~~~p~~~~v~rw~~------a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g---~~i~~~i 446 (462)
T TIGR00562 376 INIVLRDLKKVLNINNEPEMLCVTRWHR------AIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG---VGIPDCI 446 (462)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEeEccc------cCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC---CcHHHHH
Confidence 9999999999998644588889999954 23333454421 1122344556799999999864 4899999
Q ss_pred HHHHHHHHHHHHHH
Q 024393 226 STGLMAAEDCRMRV 239 (268)
Q Consensus 226 ~Sg~~aa~~i~~~l 239 (268)
.||+++|+.|++.+
T Consensus 447 ~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 447 DQGKAAASDVLTFL 460 (462)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998754
No 12
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.93 E-value=1.8e-24 Score=182.82 Aligned_cols=238 Identities=32% Similarity=0.447 Sum_probs=185.2
Q ss_pred CChHHHHHHHhcCC-----------ceeeCcceeEEEEcC-CceEEEEcCCcEEEeCEEEEecChhhhhcC-cccccCCC
Q 024393 3 RGYLPVINTLAKGL-----------DIRLGHRVTKITRHY-IGVKVTVEGGKTFVADAVVVAVPLGVLKAR-TIKFEPRL 69 (268)
Q Consensus 3 gG~~~l~~~l~~~l-----------~i~~~~~V~~I~~~~-~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~-~~~~~p~l 69 (268)
-|+..+.+-|++.+ +++++++|.+|+.++ +.+.+++.||+.+.||+||+|++...|+.- .-.|.|+|
T Consensus 220 kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~L 299 (498)
T KOG0685|consen 220 KGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPL 299 (498)
T ss_pred hHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCC
Confidence 37888889888855 266679999999886 569999999999999999999999999752 23478999
Q ss_pred cHHHHHHHhhcCCccccEEEEEeCCCCCCCC-ccceeecCCCC-------------ceeEEEeccccCCccEEEEEeccc
Q 024393 70 PDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTSY-------------GCSYFLNLHKATGHCVLVYMPAGQ 135 (268)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~-------------~~~~~~~~~~~~g~~~l~~~~~~~ 135 (268)
|.++.++++++.++...|+++.|++|||+.. ..+-.+..... ....|..... -+.+|..++.|.
T Consensus 300 P~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~--~~~vL~gWiaG~ 377 (498)
T KOG0685|consen 300 PAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSW--APNVLLGWIAGR 377 (498)
T ss_pred CHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCc--chhhhheeccCC
Confidence 9999999999999999999999999999542 22222222111 0111211111 124778888898
Q ss_pred hHHHHhcCCHHHHHHHHHHHHHHhcCC--CCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcC--------CCCC
Q 024393 136 LARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI--------PVDN 205 (268)
Q Consensus 136 ~~~~~~~~~~~e~~~~i~~~l~~~~p~--~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~--------p~~~ 205 (268)
.+..+..+++|++++.+...|.+.+++ ++.|..+..+.|..+++++|+|.+...+.-......+.. +-+.
T Consensus 378 ~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~ 457 (498)
T KOG0685|consen 378 EARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQ 457 (498)
T ss_pred cceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCce
Confidence 888999999999999999999999985 678889999999999999999998766542211111111 2347
Q ss_pred eeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 024393 206 LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 206 l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
|.|||++++-.+..++.||+.||.+.|++|++.....
T Consensus 458 I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~ 494 (498)
T KOG0685|consen 458 ILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYESS 494 (498)
T ss_pred EEEccccccccceehhhhhHHhhHHHHHHHHHHHHhh
Confidence 9999999998878899999999999999999865543
No 13
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.92 E-value=7.4e-24 Score=186.08 Aligned_cols=217 Identities=26% Similarity=0.353 Sum_probs=154.2
Q ss_pred CCChHHHHHH-Hhc-----CCceeeCcceeEEEEcCCceEEEE-cCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHH
Q 024393 2 VRGYLPVINT-LAK-----GLDIRLGHRVTKITRHYIGVKVTV-EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 74 (268)
Q Consensus 2 ~gG~~~l~~~-l~~-----~l~i~~~~~V~~I~~~~~~v~v~~-~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~ 74 (268)
+|||+++... |++ +.+|++|++|++|+.+++++.+.. .+|+++.||+||+|+|++++..+. |. +...
T Consensus 192 ~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll----~~--~~~~ 265 (419)
T TIGR03467 192 RVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLL----PG--EDLG 265 (419)
T ss_pred CCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhC----CC--chHH
Confidence 6898876644 654 457999999999999988866443 467789999999999999987531 21 1455
Q ss_pred HHHhhcCCccccEEEEEeCCCCCCCCccceeecCCCCceeE-EEeccccCCccEEEEEeccchHHHHhcCCHHHHHHHHH
Q 024393 75 AAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSY-FLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAF 153 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~ 153 (268)
+.++++.|.++.++++.|++++|.+.+..+.... ...+ +.....+.....+.+++.+ +..+.+++++++++.++
T Consensus 266 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l 340 (419)
T TIGR03467 266 ALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGG---LAQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIV 340 (419)
T ss_pred HHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCC---ceeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHH
Confidence 6778899999999999999999866555555432 1222 2211122222344444443 35677889999999999
Q ss_pred HHHHHhcCCC--CCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecccCCCCCccchhhHHHHHHH
Q 024393 154 TQLKKILPDA--SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 231 (268)
Q Consensus 154 ~~l~~~~p~~--~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~a 231 (268)
++|.++||.. ..+....+.+|.+..+. ..++. ...++.+.+|.++||||||+++++++++||||+.||.+|
T Consensus 341 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~-~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~a 413 (419)
T TIGR03467 341 AELRRAFPRVAGAKPLWARVIKEKRATFA------ATPGL-NRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQA 413 (419)
T ss_pred HHHHHhcCccccCCccceEEEEccCCccc------cCCcc-cccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHH
Confidence 9999999963 23445556666543332 12332 223455667889999999999987778999999999999
Q ss_pred HHHHH
Q 024393 232 AEDCR 236 (268)
Q Consensus 232 a~~i~ 236 (268)
|+.|+
T Consensus 414 A~~i~ 418 (419)
T TIGR03467 414 AEAVL 418 (419)
T ss_pred HHHHh
Confidence 99886
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.92 E-value=2.6e-23 Score=184.88 Aligned_cols=224 Identities=16% Similarity=0.198 Sum_probs=163.1
Q ss_pred CCCChHHHHHHHhcCC---ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHH
Q 024393 1 MVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 77 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~ 77 (268)
++|||++|+++|++.+ +|++|++|++|+.+++++.|.+.+|+++.||+||+|+|++.+..+ .+.|.++ +.+
T Consensus 221 ~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~l--l~~~~l~----~~~ 294 (463)
T PRK12416 221 FKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETL--LQSNELN----EQF 294 (463)
T ss_pred eCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhh--cCCcchh----HHH
Confidence 4799999999999988 499999999999998889888888888999999999999988643 3344443 345
Q ss_pred hhcCCccccEEEEEeCCCCCC-CCccceeecCCCCce----eEEEec-c--ccCCccEEEE-Eec--cchHHHHhcCCHH
Q 024393 78 DDLGVGIENKIIMHFDKVFWP-NVEFLGVVSDTSYGC----SYFLNL-H--KATGHCVLVY-MPA--GQLARDIEKMSDE 146 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~----~~~~~~-~--~~~g~~~l~~-~~~--~~~~~~~~~~~~~ 146 (268)
+++.+.++.++++.|++++|. ..+.+|++.+..... ..+.+. . .+.+..+++. ++. ++.+..+.+++++
T Consensus 295 ~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~de 374 (463)
T PRK12416 295 HTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEE 374 (463)
T ss_pred hcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHH
Confidence 677889999999999987663 223467775443321 112211 1 1123334443 443 3566778889999
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcccCCCcCCCcccCcCCCCCCh---HHHHHhcCCCCCeeeeecccCCCCCccchh
Q 024393 147 AAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSH---DLYERLRIPVDNLFFAGEATSMSYPGSVHG 223 (268)
Q Consensus 147 e~~~~i~~~l~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~---~~~~~~~~p~~~l~~aG~~~~~~~~g~~~g 223 (268)
++.+.++++|+++|+....|..+.+++|.+. .+.| ..+... ...+.+..+.++||+||+++.+ .+|++
T Consensus 375 e~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a---~P~y---~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i~~ 445 (463)
T PRK12416 375 ELVRVALYDIEKSLGIKGEPEVVEVTNWKDL---MPKY---HLEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGIGA 445 (463)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEEEcccc---CCCc---CcCHHHHHHHHHHHHHhhCCCeEEecccccc---ccHHH
Confidence 9999999999999987667888999999642 1112 232211 1223444567899999999875 47999
Q ss_pred hHHHHHHHHHHHHHHH
Q 024393 224 AFSTGLMAAEDCRMRV 239 (268)
Q Consensus 224 A~~Sg~~aa~~i~~~l 239 (268)
|+.||.++|++|++.+
T Consensus 446 ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 446 CIGNGKNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 15
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.91 E-value=1.9e-22 Score=178.90 Aligned_cols=221 Identities=20% Similarity=0.236 Sum_probs=157.2
Q ss_pred CCCChHHHHHHHhcCCc---eeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHH
Q 024393 1 MVRGYLPVINTLAKGLD---IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 77 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l~---i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~ 77 (268)
++|||+.|+++|++.++ |+++++|++|+.++++|.|.+.+|+++.||+||+|+|++.+..+. . ++...+++
T Consensus 216 ~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~--~----~~~~~~~~ 289 (451)
T PRK11883 216 LKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLF--V----APPAFALF 289 (451)
T ss_pred eccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhc--c----ChhHHHHH
Confidence 47999999999999874 999999999999988888888889899999999999999987532 1 22345677
Q ss_pred hhcCCccccEEEEEeCCCCCCCCccceeecC--CCCce--eEEEec----cccCCccEEEEEeccchHHHHhcCCHHHHH
Q 024393 78 DDLGVGIENKIIMHFDKVFWPNVEFLGVVSD--TSYGC--SYFLNL----HKATGHCVLVYMPAGQLARDIEKMSDEAAA 149 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~--~~~~~~----~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~ 149 (268)
+++.|.+..++++.|+++++......+.+.. .+... ..+.+. ..|.+..++..+..........++++++++
T Consensus 290 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (451)
T PRK11883 290 KTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELV 369 (451)
T ss_pred hCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHH
Confidence 8889999999999999986323333444432 11111 112221 224454444444333323345678899999
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCC---CCCeeeeecccCCCCCccchhhHH
Q 024393 150 NFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIP---VDNLFFAGEATSMSYPGSVHGAFS 226 (268)
Q Consensus 150 ~~i~~~l~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p---~~~l~~aG~~~~~~~~g~~~gA~~ 226 (268)
+.++++|+++++...++..+.+++|... |..+.++.. .....++.+ .+|||+||+|+.+ +++++|+.
T Consensus 370 ~~~~~~L~~~~g~~~~~~~~~~~rw~~a------~p~~~~~~~-~~~~~l~~~l~~~~~l~~aG~~~~g---~~i~~av~ 439 (451)
T PRK11883 370 AFVLADLSKVMGITGDPEFTIVQRWKEA------MPQYGVGHI-ERVAELRAGLPHYPGLYVAGASFEG---VGLPDCIA 439 (451)
T ss_pred HHHHHHHHHHhCCCCCceEEEEeecCcc------CCCCCccHH-HHHHHHHHhhhhCCCEEEECcccCC---ccHHHHHH
Confidence 9999999999986456778888999543 333344432 222222222 5699999999864 57999999
Q ss_pred HHHHHHHHHHH
Q 024393 227 TGLMAAEDCRM 237 (268)
Q Consensus 227 Sg~~aa~~i~~ 237 (268)
||+.+|++|++
T Consensus 440 sg~~~a~~i~~ 450 (451)
T PRK11883 440 QAKRAAARLLA 450 (451)
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 16
>PLN02576 protoporphyrinogen oxidase
Probab=99.91 E-value=2.9e-22 Score=179.75 Aligned_cols=226 Identities=19% Similarity=0.216 Sum_probs=163.0
Q ss_pred CCCChHHHHHHHhcCCc---eeeCcceeEEEEcCCc-eEEEEc--CC-cEEEeCEEEEecChhhhhcCcccccCCCcHHH
Q 024393 1 MVRGYLPVINTLAKGLD---IRLGHRVTKITRHYIG-VKVTVE--GG-KTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 73 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l~---i~~~~~V~~I~~~~~~-v~v~~~--~g-~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~ 73 (268)
++|||++|+++|++.+. |++|++|++|+..+++ |.|++. +| +++.||+||+|+|++++..+. +++++..
T Consensus 234 ~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll----~~~~~~~ 309 (496)
T PLN02576 234 FRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEML----RPKSPAA 309 (496)
T ss_pred ccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHh----cccCHHH
Confidence 36899999999999884 9999999999998876 665543 45 468999999999999987532 2345556
Q ss_pred HHHHhhcCCccccEEEEEeCCCCCCC-------CccceeecCCCC---cee-EEEec----cccCCccEEEEEeccchHH
Q 024393 74 EAAIDDLGVGIENKIIMHFDKVFWPN-------VEFLGVVSDTSY---GCS-YFLNL----HKATGHCVLVYMPAGQLAR 138 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~---~~~-~~~~~----~~~~g~~~l~~~~~~~~~~ 138 (268)
.+.+.++.|.++.++++.|++++|.. ...+|.+.+... ... .+.+. ..+++..+++.|+.+..+.
T Consensus 310 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~ 389 (496)
T PLN02576 310 ADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNT 389 (496)
T ss_pred HHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCc
Confidence 77888899999999999999988853 123444432211 111 22221 1244555677788777777
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCC--CCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhc---CCC--CCeeeeec
Q 024393 139 DIEKMSDEAAANFAFTQLKKILPDA--SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLR---IPV--DNLFFAGE 211 (268)
Q Consensus 139 ~~~~~~~~e~~~~i~~~l~~~~p~~--~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~---~p~--~~l~~aG~ 211 (268)
.+.+++++++.+.++++|.+++|.. ..|..+.+++|.+. ++.+.+++. ...+.++ ... ++||+||+
T Consensus 390 ~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a------~P~~~~g~~-~~~~~~~~~l~~~~~~~l~~aG~ 462 (496)
T PLN02576 390 GIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKA------IPQYLLGHL-DVLEAAEKMEKDLGLPGLFLGGN 462 (496)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcc------cCCCCcCHH-HHHHHHHHHHHhcCCCCEEEecc
Confidence 8888999999999999999999852 35677778899542 222334432 2222222 122 69999999
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHHHH
Q 024393 212 ATSMSYPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 212 ~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
|+.. .++++|+.||.++|++|+..+.
T Consensus 463 ~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 463 YRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred ccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 9975 4899999999999999987654
No 17
>PLN02612 phytoene desaturase
Probab=99.90 E-value=6.5e-22 Score=178.92 Aligned_cols=226 Identities=20% Similarity=0.208 Sum_probs=147.8
Q ss_pred HHHHHHHhc-----CCceeeCcceeEEEEcCCc--eEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHh
Q 024393 6 LPVINTLAK-----GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID 78 (268)
Q Consensus 6 ~~l~~~l~~-----~l~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~ 78 (268)
..|.++|++ +.+|++|++|++|+.++++ +.+.+.+|+++.||+||+|+|+..+..+.... ..+....+.++
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~--~~~~~~~~~l~ 385 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQ--WKEIPYFKKLD 385 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcch--hcCcHHHHHHH
Confidence 456666654 4579999999999986555 34777788899999999999998886532111 11223334556
Q ss_pred hcCCccccEEEEEeCCCCCCCCccceeecCCCCceeEEEec------cccCCccEEEEEeccchHHHHhcCCHHHHHHHH
Q 024393 79 DLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNL------HKATGHCVLVYMPAGQLARDIEKMSDEAAANFA 152 (268)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i 152 (268)
++.+.++.+++++|++++|...+. .+.........+.+. +.+.+..++.+. .+ .+.+|.+++++++++.+
T Consensus 386 ~l~~~~v~~v~l~~dr~~~~~~~~--~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~-~~-~a~~~~~~sdeei~e~v 461 (567)
T PLN02612 386 KLVGVPVINVHIWFDRKLKNTYDH--LLFSRSPLLSVYADMSTTCKEYYDPNKSMLELV-FA-PAEEWISRSDEDIIDAT 461 (567)
T ss_pred hcCCCCeEEEEEEECcccCCCCCc--eeecCCCCceeehhhhhcchhhcCCCCeEEEEE-EE-cChhhhcCCHHHHHHHH
Confidence 677889999999999998853221 111111111111111 112344443333 22 45688899999999999
Q ss_pred HHHHHHhcCCCCC----CcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecccCCCCCccchhhHHHH
Q 024393 153 FTQLKKILPDASS----PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTG 228 (268)
Q Consensus 153 ~~~l~~~~p~~~~----~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg 228 (268)
+++|+++||.... ...+....+...+++. |. ..|+. ...++..++|++||||||||+.+.|+++|+||+.||
T Consensus 462 l~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~--~~-~~pg~-~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG 537 (567)
T PLN02612 462 MKELAKLFPDEISADQSKAKILKYHVVKTPRSV--YK-TVPNC-EPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSG 537 (567)
T ss_pred HHHHHHHCCcccccccCCceEEEEEEeccCCce--EE-eCCCC-cccCccccCccCCEEEeecceeCCchhhHHHHHHHH
Confidence 9999999997311 1222332333333321 11 12322 123456678999999999999988889999999999
Q ss_pred HHHHHHHHHHHHH
Q 024393 229 LMAAEDCRMRVLE 241 (268)
Q Consensus 229 ~~aa~~i~~~l~~ 241 (268)
++||+.|++++..
T Consensus 538 ~~AA~~I~~~~~~ 550 (567)
T PLN02612 538 KLCAQSIVQDYEL 550 (567)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987643
No 18
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.89 E-value=9e-22 Score=174.60 Aligned_cols=219 Identities=22% Similarity=0.271 Sum_probs=150.6
Q ss_pred hHHHHHHHhc-----CCceeeCcceeEEEEcCCc-e-EEEEcCCc-----EEEeCEEEEecChhhhhcCcccccCCCc-H
Q 024393 5 YLPVINTLAK-----GLDIRLGHRVTKITRHYIG-V-KVTVEGGK-----TFVADAVVVAVPLGVLKARTIKFEPRLP-D 71 (268)
Q Consensus 5 ~~~l~~~l~~-----~l~i~~~~~V~~I~~~~~~-v-~v~~~~g~-----~~~ad~VI~a~p~~~l~~~~~~~~p~l~-~ 71 (268)
++.++++|.+ +.+|++|++|++|+.++++ + .|++.+|+ ++.||.||+|+|++.+..+ + .+.++ .
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~l-L--~~~~~~~ 288 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLL-L--PQPWKQM 288 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhh-C--chhhhcC
Confidence 3455555544 4579999999999875544 4 36665554 7899999999999987643 1 11121 2
Q ss_pred HHHHHHhhcCCccccEEEEEeCCCCCCCCccceeecCCCCceeEEE-------eccccCCccEEEEEeccchHHHHhcCC
Q 024393 72 WKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFL-------NLHKATGHCVLVYMPAGQLARDIEKMS 144 (268)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~g~~~l~~~~~~~~~~~~~~~~ 144 (268)
...+.++++.+.+..++++.|++++|... +.+........... +.. +.+..++.+++. .+..+.+++
T Consensus 289 ~~~~~~~~~~~~~~~~v~l~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~l~~~~~~--~~~~~~~~~ 362 (453)
T TIGR02731 289 PFFQKLNGLEGVPVINVHIWFDRKLTTVD---HLLFSRSPLLSVYADMSETCKEYA-DPDKSMLELVFA--PAADWIGRS 362 (453)
T ss_pred HHHHHhhcCCCCcEEEEEEEEccccCCCC---ceeeeCCCcceeecchhhhChhhc-CCCCeEEEEEec--ChhhhhcCC
Confidence 23345566778899999999999987432 11111111111100 111 223333333333 235678899
Q ss_pred HHHHHHHHHHHHHHhcCCC---CCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecccCCCCCccc
Q 024393 145 DEAAANFAFTQLKKILPDA---SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSV 221 (268)
Q Consensus 145 ~~e~~~~i~~~l~~~~p~~---~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~ 221 (268)
++++.+.++++|+++||.. .++.++..++|.+++++. | ...|| .....+.+++|++||||||+++...|+|+|
T Consensus 363 ~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~-~~~pg-~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~ 438 (453)
T TIGR02731 363 DEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--Y-KTTPG-RQQYRPHQKTPIPNFFLAGDYTKQKYLASM 438 (453)
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--e-ccCCC-ChhhCccccCccCCEEEeehhccCcccccH
Confidence 9999999999999999862 246677778898888873 3 23456 345667788999999999999998888999
Q ss_pred hhhHHHHHHHHHHHH
Q 024393 222 HGAFSTGLMAAEDCR 236 (268)
Q Consensus 222 ~gA~~Sg~~aa~~i~ 236 (268)
|||+.||.+||+.|+
T Consensus 439 egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 439 EGAVLSGKLCAQAIV 453 (453)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999874
No 19
>PRK07233 hypothetical protein; Provisional
Probab=99.88 E-value=2.1e-21 Score=171.30 Aligned_cols=225 Identities=21% Similarity=0.251 Sum_probs=153.1
Q ss_pred CCCChHHHHHHHhcCC-----ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHH
Q 024393 1 MVRGYLPVINTLAKGL-----DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEA 75 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l-----~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~ 75 (268)
++|||+.|+++|++.+ +|+++++|++|+.+++++.+...++++++||+||+|+|++.+..+. |+++....+
T Consensus 193 ~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll----~~~~~~~~~ 268 (434)
T PRK07233 193 LEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLV----PDLPADVLA 268 (434)
T ss_pred cCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhc----CCCcHHHHh
Confidence 4799999999998754 6999999999999888876555677899999999999999886532 556666666
Q ss_pred HHhhcCCccccEEEEEeCCCCCCCCccceeecCCCCcee--EEE-ec---cccCCccEEE--EEeccchHHHHhcCCHHH
Q 024393 76 AIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFL-NL---HKATGHCVLV--YMPAGQLARDIEKMSDEA 147 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~-~~---~~~~g~~~l~--~~~~~~~~~~~~~~~~~e 147 (268)
.++.+.+.+...+++.++++.+. ...-.......++. ... +. ..|+++.+++ +++.+.. .++.+++++
T Consensus 269 ~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~ 344 (434)
T PRK07233 269 RLRRIDYQGVVCMVLKLRRPLTD--YYWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEE 344 (434)
T ss_pred hhcccCccceEEEEEEecCCCCC--CceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHH
Confidence 77888888888899999987532 11111111111111 111 11 1123444432 3433332 356788999
Q ss_pred HHHHHHHHHHHhcCCCC--CCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecccCCCCCccchhhH
Q 024393 148 AANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAF 225 (268)
Q Consensus 148 ~~~~i~~~l~~~~p~~~--~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~~gA~ 225 (268)
+++.++++|.+++|... ++.+..+.+| +++.+.+ .++ .....+.+++|++|||||||+....++++|++|+
T Consensus 345 ~~~~~~~~L~~~~p~~~~~~~~~~~~~r~---~~a~~~~---~~g-~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai 417 (434)
T PRK07233 345 LLDRFLSYLRKMFPDFDRDDVRAVRISRA---PYAQPIY---EPG-YLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSV 417 (434)
T ss_pred HHHHHHHHHHHhCCCCChhheeeEEEEEe---ccccccc---cCc-hhhcCCCcccCcCCEEEeCCcccCCccCchhHHH
Confidence 99999999999999632 3344444455 4443332 343 2233455677889999999965444456999999
Q ss_pred HHHHHHHHHHHHHHH
Q 024393 226 STGLMAAEDCRMRVL 240 (268)
Q Consensus 226 ~Sg~~aa~~i~~~l~ 240 (268)
.||.+||+.|+..++
T Consensus 418 ~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 418 RAGRRVAREILEDRR 432 (434)
T ss_pred HHHHHHHHHHhhhhc
Confidence 999999999987654
No 20
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.86 E-value=1.4e-21 Score=154.14 Aligned_cols=220 Identities=17% Similarity=0.157 Sum_probs=165.1
Q ss_pred CCChHHHHHHHhcCCceeeCcceeEEEEcCCceEEEEcCC-cEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHhhc
Q 024393 2 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 80 (268)
Q Consensus 2 ~gG~~~l~~~l~~~l~i~~~~~V~~I~~~~~~v~v~~~~g-~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~ 80 (268)
+-||+.|++.|+..++|+++++|++|...++.|++.+.+| +...+|.||+|+|.+++..+.....-.+|..++..+..+
T Consensus 104 ~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V 183 (331)
T COG3380 104 EPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADV 183 (331)
T ss_pred CcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccc
Confidence 3599999999999999999999999999999999999665 667899999999999986543222245788888888899
Q ss_pred CCccccEEEEEeCCCCCCCCccceeecCCCCceeEEE-ecc----ccCCccEEEEEeccchHHHHhcCCHHHHHHHHHHH
Q 024393 81 GVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFL-NLH----KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ 155 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~----~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~~ 155 (268)
.|.|+..+.+.|+.+. +.+..|... ++.++.|.- +.. .|.+. ++++.+..+++..+.+.+++..+..+...
T Consensus 184 ~y~Pc~s~~lg~~q~l--~~P~~G~~v-dg~~laWla~d~sK~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l~aA 259 (331)
T COG3380 184 VYAPCWSAVLGYPQPL--DRPWPGNFV-DGHPLAWLARDASKKGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVALRAA 259 (331)
T ss_pred eehhHHHHHhcCCccC--CCCCCCccc-CCCeeeeeeccccCCCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHHHHh
Confidence 9999999999998764 233344222 233444442 212 24444 77788888899999999999988888888
Q ss_pred HHHhcCC-CCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHH
Q 024393 156 LKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 234 (268)
Q Consensus 156 l~~~~p~-~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~ 234 (268)
....++. ..+|.....++| +|+.. ......-.....+-.+||+||||+++ |.+|||..||..+|++
T Consensus 260 ~~~~~~~~~~~p~~s~~H~W---rYA~P-------~~~~~~~~L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~ 326 (331)
T COG3380 260 AQELDGDRLPEPDWSDAHRW---RYAIP-------NDAVAGPPLDADRELPLYACGDWCAG---GRVEGAVLSGLAAADH 326 (331)
T ss_pred hhhccCCCCCcchHHHhhcc---ccccc-------cccccCCccccCCCCceeeecccccC---cchhHHHhccHHHHHH
Confidence 8888875 567777788899 66532 21111111122445689999999986 6999999999999999
Q ss_pred HHHH
Q 024393 235 CRMR 238 (268)
Q Consensus 235 i~~~ 238 (268)
|++.
T Consensus 327 i~~~ 330 (331)
T COG3380 327 ILNG 330 (331)
T ss_pred HHhc
Confidence 9864
No 21
>PLN02487 zeta-carotene desaturase
Probab=99.85 E-value=1.7e-19 Score=161.92 Aligned_cols=231 Identities=18% Similarity=0.114 Sum_probs=152.9
Q ss_pred CCCChHH-HHHHHhcCC-----ceeeCcceeEEEEcC--Cc---e-EEEE---cCCcEEEeCEEEEecChhhhhcCcccc
Q 024393 1 MVRGYLP-VINTLAKGL-----DIRLGHRVTKITRHY--IG---V-KVTV---EGGKTFVADAVVVAVPLGVLKARTIKF 65 (268)
Q Consensus 1 ~~gG~~~-l~~~l~~~l-----~i~~~~~V~~I~~~~--~~---v-~v~~---~~g~~~~ad~VI~a~p~~~l~~~~~~~ 65 (268)
++||++. |++.+++.| +|+++++|++|+.++ ++ + .+++ .+++.+.+|.||+|+|++.+..+.
T Consensus 289 ~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Ll--- 365 (569)
T PLN02487 289 LKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLL--- 365 (569)
T ss_pred cCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhC---
Confidence 3689995 888887644 799999999999873 22 2 3555 234578899999999999887542
Q ss_pred cCCCcHH--HHHHHhhcCCccccEEEEEeCCCCCCCC---------ccceeec--C-CCCceeEEEe--------ccccC
Q 024393 66 EPRLPDW--KEAAIDDLGVGIENKIIMHFDKVFWPNV---------EFLGVVS--D-TSYGCSYFLN--------LHKAT 123 (268)
Q Consensus 66 ~p~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~--~-~~~~~~~~~~--------~~~~~ 123 (268)
|+.... ....+.++.+.++..++++||++.-... ++.|... . .+.....+-+ .+...
T Consensus 366 -p~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~ 444 (569)
T PLN02487 366 -PEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEG 444 (569)
T ss_pred -CchhhccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccC
Confidence 322111 1345667778999999999997644211 1222110 0 0101111111 01111
Q ss_pred CccEEEEEeccchHHHHhcCCHHHHHHHHHHHHHHhcCCCC--CCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcC
Q 024393 124 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI 201 (268)
Q Consensus 124 g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~p~~~--~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~ 201 (268)
....+.+++... ..+..+++++++++++++|.++||... .+.+..+.+..+..|. ..||. ...+|..++
T Consensus 445 ~g~~l~~vis~a--~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~------~~pg~-~~~RP~~~T 515 (569)
T PLN02487 445 EGSLIQAVLTPG--DPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYR------EAPGM-DPFRPDQKT 515 (569)
T ss_pred CceEEEEEEcCC--ccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceec------cCCCc-cccCCCCCC
Confidence 223555555433 467889999999999999999998732 2445455555444333 23443 234577889
Q ss_pred CCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHHHhC
Q 024393 202 PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYG 244 (268)
Q Consensus 202 p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~~~~ 244 (268)
|++|||+||||+.++|+.+||||+.||.+||+.|++......+
T Consensus 516 ~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~~~~~ 558 (569)
T PLN02487 516 PISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGEELAG 558 (569)
T ss_pred CCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999876544433
No 22
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.84 E-value=2.1e-19 Score=160.97 Aligned_cols=232 Identities=15% Similarity=0.086 Sum_probs=145.9
Q ss_pred CCCChHHHHHHHhcCC-----ceeeCcceeEEEEcCCce-EEEEcCC-----cEEEeCEEEEecChhhhhcCcccccCCC
Q 024393 1 MVRGYLPVINTLAKGL-----DIRLGHRVTKITRHYIGV-KVTVEGG-----KTFVADAVVVAVPLGVLKARTIKFEPRL 69 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l-----~i~~~~~V~~I~~~~~~v-~v~~~~g-----~~~~ad~VI~a~p~~~l~~~~~~~~p~l 69 (268)
++|||++|+++|++.+ +|+++++|++|..+++++ .+.+.+| +++.||.||+|+|+..+..+ + ..+.+
T Consensus 227 ~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~l-l-~~~~~ 304 (492)
T TIGR02733 227 LHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLEL-L-GPLGL 304 (492)
T ss_pred ecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHh-c-CcccC
Confidence 4799999999998865 599999999999988753 3444343 57899999999999988653 2 23557
Q ss_pred cHHHHHHHhhcCCcc-ccEEEEEeCCCC--CCCCccceeecCC-CCceeEE---EeccccCCccEEEEEeccch------
Q 024393 70 PDWKEAAIDDLGVGI-ENKIIMHFDKVF--WPNVEFLGVVSDT-SYGCSYF---LNLHKATGHCVLVYMPAGQL------ 136 (268)
Q Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~g~~~~~-~~~~~~~---~~~~~~~g~~~l~~~~~~~~------ 136 (268)
++...+.++++.+.+ .+.+++.+++.. +.....+...... ...+... ++...|+|+.++++.+..+.
T Consensus 305 ~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~ 384 (492)
T TIGR02733 305 PPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSL 384 (492)
T ss_pred CHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCC
Confidence 766666777788765 447888887632 1111111111111 1111111 11235667767654443322
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEEEc----ccCCCcC-CCcccC-cCC-CCCChHHHHHhcCCCCCeee
Q 024393 137 -ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVS----HWGTDAN-SLGSYS-YDT-VGKSHDLYERLRIPVDNLFF 208 (268)
Q Consensus 137 -~~~~~~~~~~e~~~~i~~~l~~~~p~~~~~~~~~~~----~w~~~~~-~~g~~~-~~~-~~~~~~~~~~~~~p~~~l~~ 208 (268)
..+|.. -++++.+++++.|++.+|++.+.+..... +|.+... ..|+.. ... +.+....++..++|++||||
T Consensus 385 ~~~~y~~-~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl 463 (492)
T TIGR02733 385 DEEDYTA-KKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWL 463 (492)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEE
Confidence 122333 36779999999999999986554443322 3332211 133322 211 22221122333678999999
Q ss_pred eecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 209 AGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 209 aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
||++++| ++++.||+.||+.+|+.|++
T Consensus 464 ~G~~~~p--G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 464 CGDSIHP--GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred ecCccCC--CCcHHHHHHHHHHHHHHHhh
Confidence 9999998 46899999999999999975
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.82 E-value=9.3e-19 Score=155.52 Aligned_cols=217 Identities=20% Similarity=0.158 Sum_probs=139.4
Q ss_pred HHHHHHhc-CCceeeCcceeEEEEcC--Cc---eE-EEEcCC---cEEEeCEEEEecChhhhhcCcccccCCCc--HHHH
Q 024393 7 PVINTLAK-GLDIRLGHRVTKITRHY--IG---VK-VTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLP--DWKE 74 (268)
Q Consensus 7 ~l~~~l~~-~l~i~~~~~V~~I~~~~--~~---v~-v~~~~g---~~~~ad~VI~a~p~~~l~~~~~~~~p~l~--~~~~ 74 (268)
.+++.|.+ +.+|+++++|++|+.++ ++ +. |++.+| +++.||+||+|+|++.+.++. |++. ....
T Consensus 224 pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll----~~~~~~~~~~ 299 (474)
T TIGR02732 224 PILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLL----PQEWRQFEEF 299 (474)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhC----ChhhhcCHHH
Confidence 36666655 55899999999999864 22 32 344433 568999999999999887642 2221 1233
Q ss_pred HHHhhcCCccccEEEEEeCCCCCCCC---------ccceee--cCCCCceeEE--E----ec--cccCCccE-EEEEecc
Q 024393 75 AAIDDLGVGIENKIIMHFDKVFWPNV---------EFLGVV--SDTSYGCSYF--L----NL--HKATGHCV-LVYMPAG 134 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~--~~~~~~~~~~--~----~~--~~~~g~~~-l~~~~~~ 134 (268)
..++++.+.++..+++.|+++.-... +..+.. .........+ + +. ..+.+... +.+++..
T Consensus 300 ~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (474)
T TIGR02732 300 DNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTP 379 (474)
T ss_pred hhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeC
Confidence 46677888999999999987543211 011100 0000001111 1 11 11123333 3333333
Q ss_pred chHHHHhcCCHHHHHHHHHHHHHHhcCCCC--CCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecc
Q 024393 135 QLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEA 212 (268)
Q Consensus 135 ~~~~~~~~~~~~e~~~~i~~~l~~~~p~~~--~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~ 212 (268)
+..+.+++++++.+.++++|+++||... .+.+..+.+..+..+. ..||. ...+|..++|.+|||+||||
T Consensus 380 --~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~------~~pg~-~~~~P~~~t~~~~l~lAGD~ 450 (474)
T TIGR02732 380 --GDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYR------EAPGM-DPFRPDQKTPISNFFLAGSY 450 (474)
T ss_pred --hhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceec------cCCCC-cccCCCCCCCCCCeEEeccc
Confidence 2467789999999999999999999632 3444445555443332 23544 23457788899999999999
Q ss_pred cCCCCCccchhhHHHHHHHHHHHH
Q 024393 213 TSMSYPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 213 ~~~~~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+.++|+.+||||+.||.+||+.|+
T Consensus 451 t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 451 TQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred cccCchHHHhHHHHHHHHHHHHhC
Confidence 999999999999999999999873
No 24
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.80 E-value=4.1e-18 Score=147.30 Aligned_cols=221 Identities=21% Similarity=0.226 Sum_probs=159.4
Q ss_pred CCCChHHHHHHHhcCC--ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHh
Q 024393 1 MVRGYLPVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID 78 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l--~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~ 78 (268)
++||+++|+++|++.+ +|+++++|++|.++..++.+.+.+|++++||.||+|+|++.+..+. ++ .......+
T Consensus 210 ~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll----~~--~~~~~~~~ 283 (444)
T COG1232 210 LRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLL----GD--EAVSKAAK 283 (444)
T ss_pred cCccHHHHHHHHHHHhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHc----CC--cchhhhhh
Confidence 4799999999999987 5889999999999988888888899999999999999999987532 22 22345678
Q ss_pred hcCCccccEEEEEeCCCCC-CCCccceeecCCCCc----eeE---EEeccccCCccEEEEEeccchHHHHhcCCHHHHHH
Q 024393 79 DLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG----CSY---FLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAAN 150 (268)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~----~~~---~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~ 150 (268)
++.+.+...+.+.++++-. ...+.+|.+...+.+ +.+ ++....|+|+.++.+++....-.....+++||+.+
T Consensus 284 ~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~ 363 (444)
T COG1232 284 ELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVA 363 (444)
T ss_pred hccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHH
Confidence 8888777778888887511 123445655444333 122 22233456777777766655555556778999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEcccCCCcCCCcccCcCCCCCChHH---HHHhcCCCCCeeeeecccCCCCCccchhhHHH
Q 024393 151 FAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL---YERLRIPVDNLFFAGEATSMSYPGSVHGAFST 227 (268)
Q Consensus 151 ~i~~~l~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~---~~~~~~p~~~l~~aG~~~~~~~~g~~~gA~~S 227 (268)
.++++|.++++...+|..+.+.+|.. +++.+.+|+.... +..+.+-.++|+++|.|... -++++|+.+
T Consensus 364 ~~l~~L~~~~~~~~~~~~~~v~r~~~------~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~ 434 (444)
T COG1232 364 AVLDDLKKLGGINGDPVFVEVTRWKY------AMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAA 434 (444)
T ss_pred HHHHHHHHHcCcCcchhheeeeeccc------cCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHH
Confidence 99999999999877788888888833 2333345443222 22233223799999999865 289999999
Q ss_pred HHHHHHHHH
Q 024393 228 GLMAAEDCR 236 (268)
Q Consensus 228 g~~aa~~i~ 236 (268)
|..||+.++
T Consensus 435 g~~aa~~l~ 443 (444)
T COG1232 435 GKEAAEQLL 443 (444)
T ss_pred HHHHHHHhh
Confidence 999998875
No 25
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.77 E-value=3.8e-17 Score=146.42 Aligned_cols=234 Identities=18% Similarity=0.175 Sum_probs=142.7
Q ss_pred CCCChHHHHHHHhcC-----CceeeCcceeEEEEcCCc-eEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHH
Q 024393 1 MVRGYLPVINTLAKG-----LDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 74 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~-----l~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~ 74 (268)
+.||++.|+++|.+. ++|+++++|++|..++++ +.|++.+|+++.||.||+|+++..+....+. ...+++...
T Consensus 224 ~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~~~~ 302 (493)
T TIGR02730 224 PKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPKKEK 302 (493)
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccchhhH
Confidence 468999999999775 479999999999988776 4477888888999999999977654321221 122444333
Q ss_pred HHHhhcCCc-cccEEEEEeCCCCCCC----Cccc-e---eecCC-CCceeEEEec----cccCCccEEEEEeccchHHHH
Q 024393 75 AAIDDLGVG-IENKIIMHFDKVFWPN----VEFL-G---VVSDT-SYGCSYFLNL----HKATGHCVLVYMPAGQLARDI 140 (268)
Q Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~-g---~~~~~-~~~~~~~~~~----~~~~g~~~l~~~~~~~~~~~~ 140 (268)
..+++++++ +..++++.++.+.-.. ...+ . .+... +..+..+++. .+|+|+.++.+++.... ..|
T Consensus 303 ~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~-~~w 381 (493)
T TIGR02730 303 NWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSM-EDW 381 (493)
T ss_pred HHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCCh-hhc
Confidence 444555553 4667888887743111 0000 0 00010 1111122222 24667767665553222 222
Q ss_pred h-------cCCHHHHHHHHHHHHHHhcCCCCCCcEEEEc----ccCCC-cCCCcccCcCCCCCChHHH--HHhcCCCCCe
Q 024393 141 E-------KMSDEAAANFAFTQLKKILPDASSPIQYLVS----HWGTD-ANSLGSYSYDTVGKSHDLY--ERLRIPVDNL 206 (268)
Q Consensus 141 ~-------~~~~~e~~~~i~~~l~~~~p~~~~~~~~~~~----~w~~~-~~~~g~~~~~~~~~~~~~~--~~~~~p~~~l 206 (268)
. +..++++.+++++.|++.+|+..+.+..... +|.+. ....|.|............ +..++|++||
T Consensus 382 ~~~~~~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gL 461 (493)
T TIGR02730 382 QGLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGL 461 (493)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCe
Confidence 1 2236779999999999999985444433321 23221 1124555322111111111 2356889999
Q ss_pred eeeecccCCCCCccchhhHHHHHHHHHHHHHH
Q 024393 207 FFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 207 ~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~ 238 (268)
|+||++++| ++++.+|+.||+.+|+.|+.+
T Consensus 462 yl~G~~~~p--G~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 462 YCVGDSCFP--GQGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred EEecCcCCC--CCCHHHHHHHHHHHHHHHHhh
Confidence 999999998 479999999999999999865
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.75 E-value=3e-17 Score=147.54 Aligned_cols=235 Identities=16% Similarity=0.113 Sum_probs=143.2
Q ss_pred CCCChHHHHHHHhc-----CCceeeCcceeEEEEcCCc-eEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCC-cHHH
Q 024393 1 MVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRL-PDWK 73 (268)
Q Consensus 1 ~~gG~~~l~~~l~~-----~l~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l-~~~~ 73 (268)
+.||++.++++|++ +++|+++++|++|..++++ +.|.+.+|+++.||.||+|+++..+....+ .+.. ++..
T Consensus 214 ~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~--~~~~~~~~~ 291 (502)
T TIGR02734 214 PRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL--PNHPRRRYP 291 (502)
T ss_pred cCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc--Ccccccccc
Confidence 36899999999977 4579999999999988776 568888888999999999999977653222 2222 2222
Q ss_pred HHHHhhcCC-ccccEEEEEeC---CCCCCCCc---cc---------------eeecCCCCceeEEEec----cccCCccE
Q 024393 74 EAAIDDLGV-GIENKIIMHFD---KVFWPNVE---FL---------------GVVSDTSYGCSYFLNL----HKATGHCV 127 (268)
Q Consensus 74 ~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~---~~---------------g~~~~~~~~~~~~~~~----~~~~g~~~ 127 (268)
.+.+++.++ .+.+++++.++ +++ .... .+ |.+...+..+...++. .+|+|+..
T Consensus 292 ~~~~~~~~~s~s~~~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~ 370 (502)
T TIGR02734 292 AARLSRKRPSPSLFVLYFGLLGVDGHW-PQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCEN 370 (502)
T ss_pred ccccccCCcCCeeeEEEEeeccccCcC-CCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCcc
Confidence 344455554 45566788887 332 1110 00 1111111112222222 34667666
Q ss_pred EEEEeccch----HHHHhcCCHHHHHHHHHHHHHHh-cCCCCCCcEEEEc----ccCCCc-CCCcccCcCC--CCCChHH
Q 024393 128 LVYMPAGQL----ARDIEKMSDEAAANFAFTQLKKI-LPDASSPIQYLVS----HWGTDA-NSLGSYSYDT--VGKSHDL 195 (268)
Q Consensus 128 l~~~~~~~~----~~~~~~~~~~e~~~~i~~~l~~~-~p~~~~~~~~~~~----~w~~~~-~~~g~~~~~~--~~~~~~~ 195 (268)
+.+++..+. ...|.. .++++.+++++.|++. +|++.+.+..... +|.+.. ...|+..... ..+....
T Consensus 371 ~~~~~~~~~~~~~~~~~~~-~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~ 449 (502)
T TIGR02734 371 LYVLAPVPHLGTADVDWSV-EGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWF 449 (502)
T ss_pred EEEEEeCCCCCCCCCCcHH-HHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccC
Confidence 654443221 112333 3678999999999998 9985444433221 232211 1123322111 1221112
Q ss_pred HHH-hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 196 YER-LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 196 ~~~-~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
++. .++|++|||+||++++| ++++.+|+.||+.+|+.|+.++.+
T Consensus 450 rp~~~~t~i~gLyl~G~~~~p--G~Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 450 RPHNRDRKIDNLYLVGAGTHP--GAGVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred CCCCCCCCCCCEEEeCCCCCC--CCCHHHHHHHHHHHHHHHHhhccC
Confidence 332 35689999999999998 469999999999999999876443
No 27
>PRK07208 hypothetical protein; Provisional
Probab=99.75 E-value=5.3e-17 Score=145.15 Aligned_cols=225 Identities=20% Similarity=0.125 Sum_probs=145.6
Q ss_pred CCCChHHHHHHHhcCC-----ceeeCcceeEEEEcCCce-E-EEE--cCCc--EEEeCEEEEecChhhhhcCcccccCCC
Q 024393 1 MVRGYLPVINTLAKGL-----DIRLGHRVTKITRHYIGV-K-VTV--EGGK--TFVADAVVVAVPLGVLKARTIKFEPRL 69 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l-----~i~~~~~V~~I~~~~~~v-~-v~~--~~g~--~~~ad~VI~a~p~~~l~~~~~~~~p~l 69 (268)
++|||+.|+++|++.+ +|++|++|++|..+++++ . +.. .+|+ ++.||+||+|+|++.+..+ + .+.+
T Consensus 213 p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~-l--~~~~ 289 (479)
T PRK07208 213 PKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAA-L--DPPP 289 (479)
T ss_pred CCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHh-c--CCCC
Confidence 3799999999998754 699999999999987763 2 332 2353 6889999999999987643 2 3557
Q ss_pred cHHHHHHHhhcCCccccEEEEEeCCCCCCCCccceeecCCCCc---eeEEE---eccccCCcc-EEEE-EeccchHHHHh
Q 024393 70 PDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYG---CSYFL---NLHKATGHC-VLVY-MPAGQLARDIE 141 (268)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~---~~~~~~g~~-~l~~-~~~~~~~~~~~ 141 (268)
++...+.++.+.+.+..++++.|+++.+.... ..++...... ...+. ....|+|.. .+.. +... .....+
T Consensus 290 ~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~-~~~~~~ 367 (479)
T PRK07208 290 PPEVRAAAAGLRYRDFITVGLLVKELNLFPDN-WIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCF-EGDDLW 367 (479)
T ss_pred CHHHHHHHhCCCcceeEEEEEEecCCCCCCCc-eEEecCCCCccceecccccCCcccCCCCCceEEEEEEEcc-CCCccc
Confidence 77777777888898888999999987542221 1222221111 11111 112355553 2221 2211 112355
Q ss_pred cCCHHHHHHHHHHHHHHhcCC-CCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHH---hcCCCCCeeeeecccCCCC
Q 024393 142 KMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYER---LRIPVDNLFFAGEATSMSY 217 (268)
Q Consensus 142 ~~~~~e~~~~i~~~l~~~~p~-~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~---~~~p~~~l~~aG~~~~~~~ 217 (268)
++++++++++++++|.++.+. ...+....+.+|. + +++.+.++. ....+. ..++.+|||+||+.....+
T Consensus 368 ~~~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~---~---a~P~y~~~~-~~~~~~~~~~~~~~~~l~laGr~~~~~~ 440 (479)
T PRK07208 368 NMSDEDLIALAIQELARLGLIRPADVEDGFVVRVP---K---AYPVYDGTY-ERNVEIIRDLLDHFPNLHLVGRNGMHRY 440 (479)
T ss_pred cCCHHHHHHHHHHHHHHcCCCChhheeEEEEEEec---C---cccCCCchH-HHHHHHHHHHHHhcCCceeecccccccc
Confidence 789999999999999997432 2345566677773 2 232223332 222222 3356789999998765543
Q ss_pred CccchhhHHHHHHHHHHHHHH
Q 024393 218 PGSVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 218 ~g~~~gA~~Sg~~aa~~i~~~ 238 (268)
.++++|+.||..+|+.|...
T Consensus 441 -~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 441 -NNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred -CChhHHHHHHHHHHHHHhcC
Confidence 48999999999999998764
No 28
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.51 E-value=8.3e-13 Score=111.63 Aligned_cols=230 Identities=19% Similarity=0.132 Sum_probs=131.5
Q ss_pred CCCChHHHHHHHhcCC-----ceeeCcceeEEEEcCCc-eEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHH
Q 024393 1 MVRGYLPVINTLAKGL-----DIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 74 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l-----~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~ 74 (268)
+.|||+.+++++++.+ +|.+++.|++|..++++ +.|...+|.++.+..||+++.+..+-. .+.-...||++.
T Consensus 259 p~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~-kLlp~e~LPeef- 336 (561)
T KOG4254|consen 259 PRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFE-KLLPGEALPEEF- 336 (561)
T ss_pred CCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHH-HhCCCccCCchh-
Confidence 4799999999999866 69999999999999987 559999999999999999998776532 121123477765
Q ss_pred HHHhhcCC-ccccE----EEEEeCCCCC---CCCcc--------------------ceeecCCCCceeEEEec----ccc
Q 024393 75 AAIDDLGV-GIENK----IIMHFDKVFW---PNVEF--------------------LGVVSDTSYGCSYFLNL----HKA 122 (268)
Q Consensus 75 ~~~~~~~~-~~~~~----~~~~~~~~~~---~~~~~--------------------~g~~~~~~~~~~~~~~~----~~~ 122 (268)
.++++.+ .+..+ .++.....-- +...+ -|.....+-....+++. ..|
T Consensus 337 -~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~lDptlap 415 (561)
T KOG4254|consen 337 -VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSLDPTLAP 415 (561)
T ss_pred -hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccccCCCcCC
Confidence 4444433 22332 1222111000 00000 01000000011223322 234
Q ss_pred CCccEEEEEeccchHHHHhc-------CCHHHHHHHHHHHHHHhcCCCCCCcEE-EEc-ccCCCcC---CCcccCcCC--
Q 024393 123 TGHCVLVYMPAGQLARDIEK-------MSDEAAANFAFTQLKKILPDASSPIQY-LVS-HWGTDAN---SLGSYSYDT-- 188 (268)
Q Consensus 123 ~g~~~l~~~~~~~~~~~~~~-------~~~~e~~~~i~~~l~~~~p~~~~~~~~-~~~-~w~~~~~---~~g~~~~~~-- 188 (268)
.|+.++..++.... ..|.+ .-+++..+++++.+.+++|.....+.. .+- --++..+ .+|.|...+
T Consensus 416 pg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ 494 (561)
T KOG4254|consen 416 PGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGGNIFHGAMG 494 (561)
T ss_pred CCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCCcccCcccc
Confidence 56666665554322 23333 335789999999999999985433222 211 1111111 234333211
Q ss_pred CCCChHHHH-----HhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHH
Q 024393 189 VGKSHDLYE-----RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 189 ~~~~~~~~~-----~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~ 238 (268)
..+..-.+| ..++|+++||+||+.++| +|++.+|. |+.+|...+.+
T Consensus 495 ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afP--GgGV~a~a--G~~~A~~a~~~ 545 (561)
T KOG4254|consen 495 LDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFP--GGGVMAAA--GRLAAHSAILD 545 (561)
T ss_pred cccccccCCccccccCCCCCCceEEecCCCCC--CCCccccc--hhHHHHHHhhh
Confidence 111001123 347899999999999999 46777766 88888776543
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.31 E-value=4.4e-12 Score=113.31 Aligned_cols=227 Identities=15% Similarity=0.072 Sum_probs=117.2
Q ss_pred CCCChHHHHHHHhc-----CCceeeCcceeEEEEcCCc-eEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHH
Q 024393 1 MVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 74 (268)
Q Consensus 1 ~~gG~~~l~~~l~~-----~l~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~ 74 (268)
.+|||+.|+++|++ +++|+++++|++|..++++ +.+.+.+|+.+++|.||+++.+.....+ .+.... .
T Consensus 219 p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l----~~~~~~--~ 292 (487)
T COG1233 219 PRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARL----LGEARR--P 292 (487)
T ss_pred eeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhhhh----hhhhhh--h
Confidence 37999999999988 5689999999999999986 7788878878999999999988433211 111110 0
Q ss_pred HHHhhcC-CccccEEEEEeCCC--------------CCCCC-ccceeecCC-CCceeEEE----eccccCCcc-EEEEEe
Q 024393 75 AAIDDLG-VGIENKIIMHFDKV--------------FWPNV-EFLGVVSDT-SYGCSYFL----NLHKATGHC-VLVYMP 132 (268)
Q Consensus 75 ~~~~~~~-~~~~~~~~~~~~~~--------------~~~~~-~~~g~~~~~-~~~~~~~~----~~~~~~g~~-~l~~~~ 132 (268)
....... .......++.++.. ++... ..+...... +..+...+ ...+|+|+. .+..+.
T Consensus 293 ~~~~~~~~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~ 372 (487)
T COG1233 293 RYRGSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLV 372 (487)
T ss_pred ccccchhhhhHHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeee
Confidence 0001111 11122223333321 11000 000000000 00011112 223466754 222222
Q ss_pred ccchHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEEEc----ccCCCc-CCCcccCcC--CCCCChHHHHHh-cCCCC
Q 024393 133 AGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVS----HWGTDA-NSLGSYSYD--TVGKSHDLYERL-RIPVD 204 (268)
Q Consensus 133 ~~~~~~~~~~~~~~e~~~~i~~~l~~~~p~~~~~~~~~~~----~w~~~~-~~~g~~~~~--~~~~~~~~~~~~-~~p~~ 204 (268)
.-+ ...+++..++++.+. +.++++..|..++.+..... ++.+.. ...|.+... ...+....++.. ++|++
T Consensus 373 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~ 450 (487)
T COG1233 373 PVP-SLGDYDELKESLADA-IDALEELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIK 450 (487)
T ss_pred ecC-cCCChHHHHHHHHHH-HHHHhhcCCCcccceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcC
Confidence 111 111222234555555 66788888886655422221 221111 122322211 111111122222 47899
Q ss_pred CeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 205 NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 205 ~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
|||+||++++| ++++.++..++...+..+..
T Consensus 451 ~LYl~Ga~t~P--G~Gv~g~~g~~~a~~~~~~~ 481 (487)
T COG1233 451 GLYLVGASTHP--GGGVPGVPGSAAAVALLIDL 481 (487)
T ss_pred ceEEeCCcCCC--CCCcchhhhhHHHHHhhhcc
Confidence 99999999999 47899988777776666643
No 30
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.29 E-value=2.3e-10 Score=96.56 Aligned_cols=223 Identities=19% Similarity=0.187 Sum_probs=151.8
Q ss_pred CCCChHHHHHHHhcCC-----ceeeCcceeEEEEcC-CceEEEE--cCC-cEEEeCEEEEecChhhhhcCcccccCCCcH
Q 024393 1 MVRGYLPVINTLAKGL-----DIRLGHRVTKITRHY-IGVKVTV--EGG-KTFVADAVVVAVPLGVLKARTIKFEPRLPD 71 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l-----~i~~~~~V~~I~~~~-~~v~v~~--~~g-~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~ 71 (268)
++||++.++++|.+.+ .|.++-++..+.... ++|.+.+ .++ ..+..+++..|+|...+..+. +.+.+
T Consensus 244 l~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll----~~~~~ 319 (491)
T KOG1276|consen 244 LKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLL----RGLQN 319 (491)
T ss_pred hhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhc----cccch
Confidence 4799999999999877 378888888887554 4466554 444 334567777899999887542 55666
Q ss_pred HHHHHHhhcCCccccEEEEEeCCC-CCCCCccceeecCC--CCc---ee-EEEecc-cc-CCccEEEEEeccchHHHH--
Q 024393 72 WKEAAIDDLGVGIENKIIMHFDKV-FWPNVEFLGVVSDT--SYG---CS-YFLNLH-KA-TGHCVLVYMPAGQLARDI-- 140 (268)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~--~~~---~~-~~~~~~-~~-~g~~~l~~~~~~~~~~~~-- 140 (268)
....++..+.|.++..+++.|..+ .-.+...||.+.+. .++ .. .|++.. ++ ++.+.+++++.+.+...+
T Consensus 320 sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~ 399 (491)
T KOG1276|consen 320 SLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNTSL 399 (491)
T ss_pred hhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccccCcC
Confidence 667788889999999999999875 33445667887662 221 22 244322 22 233467776665544422
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCcEEEEcccCCCcCCCcccCcCCCCCChHH---HHHhc-CCCCCeeeeecccCCC
Q 024393 141 EKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL---YERLR-IPVDNLFFAGEATSMS 216 (268)
Q Consensus 141 ~~~~~~e~~~~i~~~l~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~---~~~~~-~p~~~l~~aG~~~~~~ 216 (268)
...+.||+++.+.++|.++++...+|....++-|.+ |++.+..|++... +..+. .+-.+|+++|.+...
T Consensus 400 ~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~------ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~G- 472 (491)
T KOG1276|consen 400 AVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKN------CIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGG- 472 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhh------cccceecchHHHHHHHHHHHHhCCCCceEeeccccCC-
Confidence 345889999999999999998766677777776743 3444445544322 11222 234689999999976
Q ss_pred CCccchhhHHHHHHHHHHHH
Q 024393 217 YPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 217 ~~g~~~gA~~Sg~~aa~~i~ 236 (268)
-++..|+.||+++|..++
T Consensus 473 --v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 473 --VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred --CChhHHHHhhHHHHHhhc
Confidence 389999999999988764
No 31
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=4.5e-08 Score=85.37 Aligned_cols=234 Identities=17% Similarity=0.068 Sum_probs=131.3
Q ss_pred CceeeCcceeEEEEcC---C-c-eEEEEcCC--cEEEeCEEEEecChhhhhcCcccccCCCc-HHHHHHHhhcCCccccE
Q 024393 16 LDIRLGHRVTKITRHY---I-G-VKVTVEGG--KTFVADAVVVAVPLGVLKARTIKFEPRLP-DWKEAAIDDLGVGIENK 87 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~---~-~-v~v~~~~g--~~~~ad~VI~a~p~~~l~~~~~~~~p~l~-~~~~~~~~~~~~~~~~~ 87 (268)
.+++.+.+|..|..+. . + +.+...+- +...++.++.+...+.+.... ...-+ .+.-..+-.+...+..+
T Consensus 230 ~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~---ps~W~~~~~f~~ly~l~~~p~~~ 306 (485)
T COG3349 230 RKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDL---PSEWPKWSNFDGLYGLRLVPVIT 306 (485)
T ss_pred ceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcC---cccccccccccccccccccceeE
Confidence 3699999999998654 2 2 33444322 344566666666666654321 11111 11112333445688899
Q ss_pred EEEEeCCCCCCCCc---cceee---cCCCCceeEEEe-------ccccCCccEEEEEeccchHHHHhcCCHHHHHHHHHH
Q 024393 88 IIMHFDKVFWPNVE---FLGVV---SDTSYGCSYFLN-------LHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFT 154 (268)
Q Consensus 88 ~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~-------~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~ 154 (268)
++++|+...|.... .++.. .+.....+.+.. ..++.....+-.. .+ ....|...+++++.....+
T Consensus 307 ~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~-~~-~~~~~~~~~~~~~~a~~e~ 384 (485)
T COG3349 307 LHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKV-LA-PGWPFLFESDEAIVATFEK 384 (485)
T ss_pred EEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhh-hc-ccccccccchhhHHHHHHH
Confidence 99999865442111 00100 110111111111 1111111111111 11 1234555678889999999
Q ss_pred HHHHhcCCCCCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHH
Q 024393 155 QLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 234 (268)
Q Consensus 155 ~l~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~ 234 (268)
++...+|...+-. -|.+......+.....||.. .++|...+|..|++++||++...+.++||+|..||++||+.
T Consensus 385 ~~~~~vP~~~~a~-----~~~~~i~~~q~~~~~~pgs~-~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~ 458 (485)
T COG3349 385 ELYELVPSLAEAK-----LKSSVLVNQQSLYGLAPGSY-HYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANA 458 (485)
T ss_pred HhhhcCCchhccc-----ccccceeccccccccCCCcc-ccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHH
Confidence 9998888621111 11111111112222345442 46788889999999999999887789999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCccC
Q 024393 235 CRMRVLERYGELDLFQPVMGEETPIS 260 (268)
Q Consensus 235 i~~~l~~~~~~~~~~~~~~~~~~~~~ 260 (268)
|++.+.....+-+..+..+..+..++
T Consensus 459 v~~~~~~~~~~~~~~~~~~~~~~vl~ 484 (485)
T COG3349 459 ILDNLGHHAPLDRRDLSDPAPFGVLR 484 (485)
T ss_pred HHHhhhhcCccccccccCcCchhhcc
Confidence 99988877664444566666655544
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.40 E-value=1.8e-06 Score=71.73 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=71.0
Q ss_pred CCCChHHHHHHHhcCCc--eeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHh
Q 024393 1 MVRGYLPVINTLAKGLD--IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID 78 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~l~--i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~ 78 (268)
+.||...-+++|+.++. |+++++|..|.+-.+++.++..+|++..||.||+++.+.+...+. ++-+++-++.+.
T Consensus 215 V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL----~e~sp~e~qll~ 290 (447)
T COG2907 215 VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL----DEPSPEERQLLG 290 (447)
T ss_pred cccchHHHHHHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhc----CCCCHHHHHHHH
Confidence 57999999999999995 999999999999999999988899998999999999998865432 333444456889
Q ss_pred hcCCccccEEEEE
Q 024393 79 DLGVGIENKIIMH 91 (268)
Q Consensus 79 ~~~~~~~~~~~~~ 91 (268)
++.|.....+...
T Consensus 291 a~~Ys~n~aVlht 303 (447)
T COG2907 291 ALRYSANTAVLHT 303 (447)
T ss_pred hhhhhhceeEEee
Confidence 9999777655444
No 33
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.97 E-value=0.00078 Score=58.60 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=41.1
Q ss_pred HHHHHhc--CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 8 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 8 l~~~l~~--~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
|.+.+.+ +++++++++|++|+.+++++.+.+.+|+++.||.||.|...+.
T Consensus 111 L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 111 LLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 4444443 5789999999999988888888888888899999999998764
No 34
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.89 E-value=0.00013 Score=62.83 Aligned_cols=57 Identities=32% Similarity=0.417 Sum_probs=42.0
Q ss_pred CCCChHHHHHHHhc--CCceeeCcceeEE-EEcCCc---eEEEEcC--C-cEEEeCEEEEecChhhh
Q 024393 1 MVRGYLPVINTLAK--GLDIRLGHRVTKI-TRHYIG---VKVTVEG--G-KTFVADAVVVAVPLGVL 58 (268)
Q Consensus 1 ~~gG~~~l~~~l~~--~l~i~~~~~V~~I-~~~~~~---v~v~~~~--g-~~~~ad~VI~a~p~~~l 58 (268)
++||..+|.+.|.+ +.++ ++++|++| ...+++ +.|...+ + ..-.+|.||+|+|.+..
T Consensus 123 V~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 123 VEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred ecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 58999999999976 4579 99999999 444433 4455543 2 23457999999999653
No 35
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.88 E-value=0.0037 Score=54.33 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=36.2
Q ss_pred CceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 16 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
++|+++++|++|+.+++++.+++.+|+++.+|.||.|...+
T Consensus 122 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 122 VTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred cEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 67999999999998888888888899899999999887654
No 36
>PRK09126 hypothetical protein; Provisional
Probab=97.77 E-value=0.0077 Score=52.61 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=37.6
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++|+++++|++++.+++.+.|++.+|+++.||.||.|...+.
T Consensus 125 g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 125 GIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred CcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence 5789999999999988888888888888999999999887654
No 37
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.73 E-value=0.0045 Score=53.99 Aligned_cols=186 Identities=13% Similarity=0.068 Sum_probs=94.8
Q ss_pred eeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCccccEEEEEeCCCCC
Q 024393 18 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 97 (268)
Q Consensus 18 i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (268)
.+++++|++++.+++++.|++.+|+++++|.||.|.-.....+..+. .... ...|... .+.+.+..+..
T Consensus 128 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g--~~~~--------~~~~~~~-~~~~~v~~~~~ 196 (388)
T PRK07494 128 TRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREAAG--IGVR--------TWSYPQK-ALVLNFTHSRP 196 (388)
T ss_pred EEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcC--CCce--------ecCCCCE-EEEEEEeccCC
Confidence 48899999999988889898888889999999988876432110111 0000 0112111 12222322211
Q ss_pred CCCccceeecCCCCceeEEEeccccCCccEEEEEeccchHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEEEcccCCC
Q 024393 98 PNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTD 177 (268)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~p~~~~~~~~~~~~w~~~ 177 (268)
.............++..++ -+++...++.+...+........+++++.+.+.+.+.+.++.. . ...+
T Consensus 197 -~~~~~~~~~~~~g~~~~~P---l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~--~~~~--- 263 (388)
T PRK07494 197 -HQNVSTEFHTEGGPFTQVP---LPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQSMLGKL----T--LEPG--- 263 (388)
T ss_pred -CCCEEEEEeCCCCcEEEEE---CCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCCe----E--EccC---
Confidence 1111111111111222222 1233333333333333344556777877777766666555431 1 1000
Q ss_pred cCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecccCCC---CCccchhhHHHHHHHHHHHHH
Q 024393 178 ANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 178 ~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~---~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
...| +.. ....+... .+++.++||..|.- .+.+++.|++.|...|+.|..
T Consensus 264 ---~~~~---~l~--~~~~~~~~--~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~ 316 (388)
T PRK07494 264 ---RQAW---PLS--GQVAHRFA--AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVED 316 (388)
T ss_pred ---CcEe---ech--HHHHHhhc--cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHh
Confidence 0011 110 00111111 37999999997642 235899999999888888753
No 38
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.64 E-value=0.017 Score=50.54 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=37.4
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++++++++|++|+.+++++.+++.+|+++++|.||.|.-...
T Consensus 127 gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 127 GVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred CCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 4689999999999998888888888888999999999987643
No 39
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.62 E-value=0.014 Score=51.01 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=40.1
Q ss_pred HHHHHhc--CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 8 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 8 l~~~l~~--~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
|.+.+.+ +++++++++|++|..+++++.|++.+|+++.+|.||.|.-...
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 4444433 4679999999999988888888888888899999999887653
No 40
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.59 E-value=0.019 Score=50.35 Aligned_cols=42 Identities=31% Similarity=0.381 Sum_probs=37.1
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++|+++++|++|+.+++++.+++.+|+++.+|.||.|...+
T Consensus 125 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 125 GIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred CCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCC
Confidence 568999999999998888888888888899999999998654
No 41
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.47 E-value=0.02 Score=50.37 Aligned_cols=43 Identities=21% Similarity=0.132 Sum_probs=34.1
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcC-C--cEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEG-G--KTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~-g--~~~~ad~VI~a~p~~~ 57 (268)
+++++++++|++|+.+++++.|++.+ + ++++||.||.|--.+.
T Consensus 136 ~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 136 NITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARS 181 (415)
T ss_pred CcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCc
Confidence 46799999999999888887777653 2 4689999999886654
No 42
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.39 E-value=0.015 Score=51.15 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=40.7
Q ss_pred HHHHHhc--CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 8 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 8 l~~~l~~--~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
|.+++.+ +++|+++++|++|+.+++.+.|++.+|++++||.||.|--.+.
T Consensus 117 L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 117 LLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 4444443 4679999999999988888889888999999999999987653
No 43
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.34 E-value=0.00046 Score=61.07 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=44.6
Q ss_pred CCChHHHHHHHhcC-----CceeeCcceeEEEEcCC-c-eEEEEcCCcEEEeCEEEEecC
Q 024393 2 VRGYLPVINTLAKG-----LDIRLGHRVTKITRHYI-G-VKVTVEGGKTFVADAVVVAVP 54 (268)
Q Consensus 2 ~gG~~~l~~~l~~~-----l~i~~~~~V~~I~~~~~-~-v~v~~~~g~~~~ad~VI~a~p 54 (268)
+|||+.|+++|++. .+++++++|++|..+++ + +.|++.+|+++.|+.||++..
T Consensus 228 ~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 228 LYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred CCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 59999999999853 46999999999998764 4 568888999999999999543
No 44
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.31 E-value=0.034 Score=48.53 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=40.7
Q ss_pred HHHHHHhc--CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 7 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 7 ~l~~~l~~--~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
.|.+++.+ +++++.+++|++++.+++++.|.+.+|++++||.||.|.-...
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 34444433 5679999999999988888888888888999999999987654
No 45
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.26 E-value=0.073 Score=46.75 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=37.7
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++|+.+++|.+|+.+++++.|++.+|++++||.||.|.-.+.
T Consensus 126 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 126 DIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 4679999999999988888888888888999999999987654
No 46
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.24 E-value=0.053 Score=47.42 Aligned_cols=202 Identities=16% Similarity=0.140 Sum_probs=101.7
Q ss_pred HHHHHhcC--CceeeCcceeEEEEcCCceEEEEc-CCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCcc
Q 024393 8 VINTLAKG--LDIRLGHRVTKITRHYIGVKVTVE-GGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI 84 (268)
Q Consensus 8 l~~~l~~~--l~i~~~~~V~~I~~~~~~v~v~~~-~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~ 84 (268)
|.+++.+. ++++.++.|+.++.+++.+.++.. +|++++||.||-|=-.+...+.... ... .....|..
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~-~~~--------~~~~~y~~ 180 (387)
T COG0654 110 LLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAG-IAE--------FSGRDYGQ 180 (387)
T ss_pred HHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcC-CCC--------ccCCCCCc
Confidence 44444332 689999999999999998888887 9999999999987765543221110 000 01111221
Q ss_pred ccEEEEEeCCCCCCCCccceeecCCCCceeEEEeccccCCccEEEEEeccchHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Q 024393 85 ENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS 164 (268)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~p~~~ 164 (268)
.. +...++.+.. .............++..++- ++....++.+...........+++++. +..+.+.+|...
T Consensus 181 ~~-l~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~ 251 (387)
T COG0654 181 TA-LVANVEPEEP-HEGRAGERFTHAGPFALLPL---PDNRSSVVWSLPPGPAEDLQGLSDEEF----LRELQRRLGERD 251 (387)
T ss_pred eE-EEEEeecCCC-CCCeEEEEecCCCceEEEec---CCCceeEEEECChhhHHHHhcCCHHHH----HHHHHHhcCccc
Confidence 11 2222222111 11111111111112222221 112333444444444555566666655 566666777621
Q ss_pred CCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhcCCCCCeeeeecccCCC---CCccchhhHHHHHHHHHHHHHHHH
Q 024393 165 SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 165 ~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~aG~~~~~~---~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
.........+.. .| +... ........ +++.++||..|.. .+.+++-++.-+...|+.|.+...
T Consensus 252 ~~~~~~~~~~~~------~~---pl~~--~~a~~~~~--~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~ 317 (387)
T COG0654 252 PLGRVTLVSSRS------AF---PLSL--RVAERYRR--GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPR 317 (387)
T ss_pred ccceEEEccccc------cc---cccc--hhhhheec--CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 111111111100 01 1111 01112222 6899999997752 234888888888888888876544
No 47
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.18 E-value=0.12 Score=45.11 Aligned_cols=48 Identities=21% Similarity=0.093 Sum_probs=37.8
Q ss_pred HHHHHhc-C-CceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 8 VINTLAK-G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 8 l~~~l~~-~-l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
|.+++.+ + ++++ ++.|++|+.+++++.|++.+|+++.||.||.|.-..
T Consensus 117 L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~ 166 (388)
T PRK07608 117 LWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAH 166 (388)
T ss_pred HHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCC
Confidence 4444433 2 5677 999999998888888888888889999999988764
No 48
>PRK08013 oxidoreductase; Provisional
Probab=97.17 E-value=0.091 Score=46.13 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=40.8
Q ss_pred HHHHHhc--CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 8 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 8 l~~~l~~--~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
|.+++.+ +++++++++|++|+.+++.+.++..+|++++||.||-|--.+.
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 4444444 4689999999999988888888888899999999998877654
No 49
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.08 E-value=0.035 Score=46.12 Aligned_cols=43 Identities=33% Similarity=0.327 Sum_probs=34.7
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcC-CcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEG-GKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~-g~~~~ad~VI~a~p~~~ 57 (268)
+++++++++|+++..+++++.+...+ ++++++|.||.|.....
T Consensus 105 gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 105 GAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 46899999999999888887665543 46899999999997653
No 50
>PRK07588 hypothetical protein; Provisional
Probab=97.06 E-value=0.026 Score=49.29 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=40.0
Q ss_pred HHHhcCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 10 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 10 ~~l~~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++..+++|+++++|++|+.+++++.|++.+|+++++|.||-|--.+.
T Consensus 111 ~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 111 TAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 334445789999999999998888999999998899999998887654
No 51
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.03 E-value=0.1 Score=45.53 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=38.5
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 58 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 58 (268)
+++|+.+++|++++.+++++.|++.+|+++++|.||.|.-.+..
T Consensus 125 ~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 36799999999999988888899999999999999998876543
No 52
>PRK10015 oxidoreductase; Provisional
Probab=96.87 E-value=0.068 Score=47.45 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=33.8
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++|+.+++|+.|..+++++.+...+++++.||.||.|.-...
T Consensus 122 Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 122 GAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred CCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence 5789999999999987777664444556899999999987644
No 53
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.79 E-value=0.21 Score=42.46 Aligned_cols=42 Identities=26% Similarity=0.239 Sum_probs=35.3
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++|+.+++|++|..+++++. |.+.+| ++.||.||+|+-+..
T Consensus 151 g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 151 GVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred CCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 568999999999998888765 666666 899999999998765
No 54
>PRK06996 hypothetical protein; Provisional
Probab=96.79 E-value=0.15 Score=44.78 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=35.9
Q ss_pred HHHHHhc-CCceeeCcceeEEEEcCCceEEEEcCC---cEEEeCEEEEecC
Q 024393 8 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVP 54 (268)
Q Consensus 8 l~~~l~~-~l~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p 54 (268)
|.+++.+ +++++++++|++++.++++|.++..+| ++++||.||-|--
T Consensus 121 L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 121 LARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 3444433 457999999999998888888887654 6899999888855
No 55
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.79 E-value=0.22 Score=43.39 Aligned_cols=49 Identities=37% Similarity=0.352 Sum_probs=40.3
Q ss_pred HHHHHhcCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 8 VINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 8 l~~~l~~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+.+.+.+...+++++.|++|+..++.+.|++.+|++++|+.||-+.++.
T Consensus 93 l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 93 LLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 3444443446899999999999999888999999999999999998854
No 56
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.77 E-value=0.22 Score=43.16 Aligned_cols=43 Identities=33% Similarity=0.380 Sum_probs=37.0
Q ss_pred cCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 14 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 14 ~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
.+++|+++++|++|..+++++.|.+.+| ++.+|.||+|+....
T Consensus 162 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 162 AGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred CCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 3678999999999999888888888777 799999999998753
No 57
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.70 E-value=0.17 Score=45.05 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=38.7
Q ss_pred HHHHHhc----CCceeeCcceeEEEEc-------CCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 8 VINTLAK----GLDIRLGHRVTKITRH-------YIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 8 l~~~l~~----~l~i~~~~~V~~I~~~-------~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
|.+++.+ .++++++++|.+|+.+ ++++.|++.+|++++||.||-|--.+.
T Consensus 123 L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S 183 (437)
T TIGR01989 123 LYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS 183 (437)
T ss_pred HHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence 4555544 2689999999999853 356888888999999999998876654
No 58
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.68 E-value=0.0046 Score=48.61 Aligned_cols=41 Identities=41% Similarity=0.551 Sum_probs=32.0
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
+++|+++++|++|+.++++|.|++.+++++.||+||+|+-.
T Consensus 96 ~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 44799999999999999999999999989999999999984
No 59
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.46 E-value=0.31 Score=42.32 Aligned_cols=49 Identities=2% Similarity=0.083 Sum_probs=38.3
Q ss_pred HHHHHhc--CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 8 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 8 l~~~l~~--~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
|.+++.+ .++++++++|++|..+++++.|.+.++ +++||.||-|--.+.
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S 160 (374)
T PRK06617 110 LLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANS 160 (374)
T ss_pred HHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCc
Confidence 4444444 257899999999998888888888666 899999998887654
No 60
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.44 E-value=0.53 Score=40.78 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=35.0
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++++.+++|.+|+.+++++.|.+.++ ++.+|.||+|+...
T Consensus 159 g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 159 GATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred CCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 568999999999998888888877666 79999999999764
No 61
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.42 E-value=0.084 Score=46.85 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=34.7
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++|+.+++|++|..+++++.+...+|+++.||.||.|.-...
T Consensus 122 Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 122 GAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred CCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 5789999999999988777654455677899999999986543
No 62
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.39 E-value=0.27 Score=43.11 Aligned_cols=45 Identities=31% Similarity=0.358 Sum_probs=35.5
Q ss_pred hcCCceeeCcceeEEEEcCCceEEEE-cCCcEEEeCEEEEecChhh
Q 024393 13 AKGLDIRLGHRVTKITRHYIGVKVTV-EGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 13 ~~~l~i~~~~~V~~I~~~~~~v~v~~-~~g~~~~ad~VI~a~p~~~ 57 (268)
..+.+++.+++|..+..+++++.+.. .++.+++|+.||.|.-++.
T Consensus 107 ~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 107 EAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred HcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 34678999999999999998766444 4447899999999996554
No 63
>PRK06185 hypothetical protein; Provisional
Probab=96.38 E-value=0.59 Score=41.01 Aligned_cols=43 Identities=26% Similarity=0.217 Sum_probs=32.9
Q ss_pred CCceeeCcceeEEEEcCCceE---EEEcCCc-EEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK---VTVEGGK-TFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~---v~~~~g~-~~~ad~VI~a~p~~~ 57 (268)
+++++.+++|.++..+++++. +.+.+|+ ++.||.||.|.-...
T Consensus 123 ~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 123 NFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred CcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence 468999999999998877653 3334564 789999999887653
No 64
>PRK11445 putative oxidoreductase; Provisional
Probab=96.36 E-value=0.58 Score=40.30 Aligned_cols=46 Identities=20% Similarity=0.131 Sum_probs=36.5
Q ss_pred HhcCCceeeCcceeEEEEcCCceEEEE-cCCc--EEEeCEEEEecChhh
Q 024393 12 LAKGLDIRLGHRVTKITRHYIGVKVTV-EGGK--TFVADAVVVAVPLGV 57 (268)
Q Consensus 12 l~~~l~i~~~~~V~~I~~~~~~v~v~~-~~g~--~~~ad~VI~a~p~~~ 57 (268)
...++++++++.|.+|+.+++++.|.+ .+|+ +++||.||.|.-...
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 345678999999999998888887775 4564 688999999887654
No 65
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.35 E-value=0.012 Score=50.54 Aligned_cols=52 Identities=23% Similarity=0.447 Sum_probs=45.4
Q ss_pred CChHHHHHHHhcC-----CceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecC
Q 024393 3 RGYLPVINTLAKG-----LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 54 (268)
Q Consensus 3 gG~~~l~~~l~~~-----l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p 54 (268)
...+.|+++|.++ ++|+++++|.+|+.++.+..+.+.+|+++.||.+|+|+-
T Consensus 108 dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 108 DKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred cchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 4567788888664 579999999999999988999999999999999999986
No 66
>PRK06184 hypothetical protein; Provisional
Probab=96.25 E-value=0.2 Score=45.37 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=39.2
Q ss_pred HHHHHhc-CCceeeCcceeEEEEcCCceEEEE---cCCcEEEeCEEEEecChhhh
Q 024393 8 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGVL 58 (268)
Q Consensus 8 l~~~l~~-~l~i~~~~~V~~I~~~~~~v~v~~---~~g~~~~ad~VI~a~p~~~l 58 (268)
|.+++.+ +++|+++++|++|+.+++++.++. .++++++||+||.|.-.+..
T Consensus 115 L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 115 LRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 3344433 568999999999998888877766 55678999999999877653
No 67
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=95.98 E-value=0.17 Score=44.07 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=41.1
Q ss_pred CCCChHHHHHHHhcC--CceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhh
Q 024393 1 MVRGYLPVINTLAKG--LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 58 (268)
Q Consensus 1 ~~gG~~~l~~~l~~~--l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 58 (268)
.++|...+.++|.+. ++|++|+.+..++..++++.+.. + .+. +.||.|.|++.+
T Consensus 193 P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~~~~~~~~~~--~-~~~-~~vi~Tg~id~~ 248 (377)
T TIGR00031 193 PKGGYTKLFEKMLDHPLIDVKLNCHINLLKDKDSQLHFAN--K-AIR-KPVIYTGLIDQL 248 (377)
T ss_pred ccccHHHHHHHHHhcCCCEEEeCCccceeeccccceeecc--c-ccc-CcEEEecCchHH
Confidence 368899999999965 89999998888886555565532 2 233 789999998875
No 68
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.93 E-value=0.48 Score=43.43 Aligned_cols=44 Identities=34% Similarity=0.416 Sum_probs=36.2
Q ss_pred CCceeeCcceeEEEEcCCceEEEEc--CC--cEEEeCEEEEecChhhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVE--GG--KTFVADAVVVAVPLGVL 58 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~--~g--~~~~ad~VI~a~p~~~l 58 (268)
+++|+++++|++|+.+++++.+++. +| ++++||+||-|--.+..
T Consensus 128 gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 128 HVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred CcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 5689999999999999888887765 46 47899999998876654
No 69
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.88 E-value=0.02 Score=48.89 Aligned_cols=52 Identities=35% Similarity=0.351 Sum_probs=40.4
Q ss_pred hHHHHHHHhc-----CCceeeCcceeEEEEcCCceE-EEEcCCcEEEeCEEEEecChhh
Q 024393 5 YLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 5 ~~~l~~~l~~-----~l~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
...+.++|.+ +++|+.+++|++|..++++|. |.+.+|+ +.||.||+|+-+..
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence 4455555544 468999999999999999988 9999986 99999999997654
No 70
>PRK06126 hypothetical protein; Provisional
Probab=95.85 E-value=0.59 Score=42.86 Aligned_cols=43 Identities=37% Similarity=0.536 Sum_probs=34.1
Q ss_pred CCceeeCcceeEEEEcCCceEEEE---cCCc--EEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTV---EGGK--TFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~---~~g~--~~~ad~VI~a~p~~~ 57 (268)
+++|++++.|++|+.+++++.++. .+|+ ++.+|+||.|.-.+.
T Consensus 141 ~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 141 GVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred CceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 468999999999998888776654 3353 688999999887664
No 71
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.85 E-value=0.02 Score=49.81 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=38.2
Q ss_pred cCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 14 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 14 ~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
++++|+.+++|.+|+.+++++.|++.+|+++.||.||+|+-+..
T Consensus 147 ~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 147 IRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred CCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 35679999999999988888889888887799999999988764
No 72
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.63 E-value=0.049 Score=41.09 Aligned_cols=36 Identities=33% Similarity=0.431 Sum_probs=32.1
Q ss_pred eeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecC
Q 024393 19 RLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 54 (268)
Q Consensus 19 ~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p 54 (268)
+...+|+.|...++++.+.+.+|..+.||+||+|+-
T Consensus 119 ~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 119 HVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred EEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 457799999999999999899999999999999874
No 73
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=95.57 E-value=0.042 Score=48.29 Aligned_cols=51 Identities=29% Similarity=0.457 Sum_probs=35.3
Q ss_pred hHHHHHHHhc-----CCceeeCcceeEEEEcCCc-eEEEEcCCcEEEeCEEEEecCh
Q 024393 5 YLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 5 ~~~l~~~l~~-----~l~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
...+.+.|.+ +++|+++++|.+|+.++++ +.|++.+++++.||.||+|+--
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGG 164 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCC
Confidence 4566666644 5689999999999998887 7788867789999999999753
No 74
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.08 E-value=1.6 Score=38.24 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=32.6
Q ss_pred CCceeeCcceeEEEE-cCCceEEEE-cCCc--EEEeCEEEEecChhhh
Q 024393 15 GLDIRLGHRVTKITR-HYIGVKVTV-EGGK--TFVADAVVVAVPLGVL 58 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~-~~~~v~v~~-~~g~--~~~ad~VI~a~p~~~l 58 (268)
+++++++++|++++. +++.+.|+. .+|+ +++||.||-|--.+..
T Consensus 117 gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 117 GGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred CCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 568999999999987 555666666 3663 6889988887766543
No 75
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=94.92 E-value=0.079 Score=46.36 Aligned_cols=41 Identities=32% Similarity=0.318 Sum_probs=35.5
Q ss_pred CCceeeCcceeEEEEcCCce-EEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~ 55 (268)
+++|+++++|+.|+.+++.+ .|.+.+|+++.+|+||+|.--
T Consensus 187 G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 187 GGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred CcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 35899999999999999864 478889999999999998853
No 76
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.88 E-value=0.1 Score=45.97 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=37.5
Q ss_pred CCceeeCcceeEEEEcCCc-eEEEEcCCcE-EEeCEEEEecChhhh
Q 024393 15 GLDIRLGHRVTKITRHYIG-VKVTVEGGKT-FVADAVVVAVPLGVL 58 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~-v~v~~~~g~~-~~ad~VI~a~p~~~l 58 (268)
+++|++|++|+.|+.++++ ..+.+.+|++ ++|+.||.++.....
T Consensus 167 g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 167 GVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred CCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHH
Confidence 5689999999999999885 5577788866 999999999987764
No 77
>PRK08244 hypothetical protein; Provisional
Probab=94.83 E-value=1.9 Score=39.05 Aligned_cols=43 Identities=33% Similarity=0.405 Sum_probs=34.2
Q ss_pred CCceeeCcceeEEEEcCCceEEEEc--CC-cEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVE--GG-KTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~--~g-~~~~ad~VI~a~p~~~ 57 (268)
+++|+++++|++++.+++++.++.. +| +++++|+||.|.-.+.
T Consensus 114 gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 114 GVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred CCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 5689999999999988888766543 45 4789999999886553
No 78
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=94.60 E-value=3.6 Score=37.77 Aligned_cols=50 Identities=28% Similarity=0.392 Sum_probs=36.8
Q ss_pred HHHHHhc--CCceeeCcceeEEEEcCCceEEEE--cCCc-EEEeCEEEEecChhh
Q 024393 8 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTV--EGGK-TFVADAVVVAVPLGV 57 (268)
Q Consensus 8 l~~~l~~--~l~i~~~~~V~~I~~~~~~v~v~~--~~g~-~~~ad~VI~a~p~~~ 57 (268)
|.+++.+ +++|+++++|.+++.+++++.+.. .+|. ++.+|+||.|...+.
T Consensus 131 L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 131 LVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARS 185 (547)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCc
Confidence 3444443 368999999999998888876554 3443 689999999887654
No 79
>PLN02463 lycopene beta cyclase
Probab=94.57 E-value=1.6 Score=38.94 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++++ ..+|++|+..++++.|++.+|+++.||.||.|.-..
T Consensus 128 GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 128 GVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred CCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 45665 579999999888888999899899999999998654
No 80
>PRK07236 hypothetical protein; Provisional
Probab=94.02 E-value=0.18 Score=44.05 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=43.2
Q ss_pred hHHHHHHHhcCC---ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 5 YLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 5 ~~~l~~~l~~~l---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
...+.+.|.+.+ +|+++++|++|+.+++++.|.+.+|++++||.||.|--.+.
T Consensus 99 ~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 99 WNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 455666666654 59999999999998888999999999999999999865543
No 81
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=93.84 E-value=0.23 Score=44.94 Aligned_cols=42 Identities=29% Similarity=0.214 Sum_probs=35.2
Q ss_pred CceeeCcceeEEEEcCC-ceEEEEcCCcEEEeCEEEEecChhhh
Q 024393 16 LDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVPLGVL 58 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~~-~v~v~~~~g~~~~ad~VI~a~p~~~l 58 (268)
++|+++++|++|+.+++ .+.|.+.+| ++.||+||+|+-....
T Consensus 232 v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 232 ISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred EEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 57899999999998844 577888777 7999999999987653
No 82
>PRK05868 hypothetical protein; Validated
Probab=93.66 E-value=0.2 Score=43.56 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=38.3
Q ss_pred cCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhh
Q 024393 14 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 58 (268)
Q Consensus 14 ~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 58 (268)
.+++|+++++|++|+.+++++.|++.+|++++||.||-|--.+..
T Consensus 117 ~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 356799999999999888889999999999999999988776543
No 83
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.60 E-value=0.21 Score=43.99 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=42.7
Q ss_pred HHHHHHhcCC---ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhh
Q 024393 7 PVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 58 (268)
Q Consensus 7 ~l~~~l~~~l---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 58 (268)
.|.+.|.+.+ .++++++|++|+.++++|.+.+.+|+++++|.||.|--.+..
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 4556666654 489999999999888889999889989999999999876653
No 84
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.56 E-value=3.1 Score=36.02 Aligned_cols=40 Identities=35% Similarity=0.314 Sum_probs=32.5
Q ss_pred ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 17 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 17 ~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
.++.+++|..++..++.+.|.+.+|+ +.||.||+|+-...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 173 IIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred EEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 47779999999985444778888885 99999999998664
No 85
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=93.37 E-value=7.1 Score=36.70 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=32.0
Q ss_pred CceeeCcceeEEEEcC---CceEEEEc------CC--cEEEeCEEEEecChhhh
Q 024393 16 LDIRLGHRVTKITRHY---IGVKVTVE------GG--KTFVADAVVVAVPLGVL 58 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~---~~v~v~~~------~g--~~~~ad~VI~a~p~~~l 58 (268)
++++++++|++++.++ ..|.|+.. +| ++++||+||-|=-.+..
T Consensus 158 v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 158 LEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred eEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH
Confidence 4689999999998764 23666653 35 58899999988776654
No 86
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.30 E-value=0.3 Score=42.74 Aligned_cols=50 Identities=32% Similarity=0.448 Sum_probs=39.5
Q ss_pred HHHHHHHhc-----CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 6 LPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 6 ~~l~~~l~~-----~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
..+.++|.+ +++|+++++|.+|+.+++++.|.+.+| ++.||.||+|+...
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~ 203 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLM 203 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcc
Confidence 345555543 568999999999998888888888776 79999999998865
No 87
>PRK06847 hypothetical protein; Provisional
Probab=93.26 E-value=0.31 Score=42.20 Aligned_cols=43 Identities=44% Similarity=0.411 Sum_probs=37.9
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++|+++++|++|+.+++++.+.+.+|+++.+|.||.|.....
T Consensus 121 gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 121 GADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 5689999999999988888888888898999999999987654
No 88
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.02 E-value=0.37 Score=41.87 Aligned_cols=51 Identities=25% Similarity=0.289 Sum_probs=37.9
Q ss_pred ChHHHHHHHhc-----CCceeeCcceeEEEEcCCceEEEEcCC-cEEEeCEEEEecChh
Q 024393 4 GYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVPLG 56 (268)
Q Consensus 4 G~~~l~~~l~~-----~l~i~~~~~V~~I~~~~~~v~v~~~~g-~~~~ad~VI~a~p~~ 56 (268)
-.+.+.++|.+ +++|+++++|++| +++++.+.+.++ +++.||+||+|+--.
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGA 140 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCc
Confidence 35667777754 5689999999999 344577776443 579999999999653
No 89
>PRK06753 hypothetical protein; Provisional
Probab=92.90 E-value=0.35 Score=41.90 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHHHHHhcCC---ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 7 PVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 7 ~l~~~l~~~l---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
.|-+.|.+.+ +|+++++|++|+.+++++.|++.+|+++.+|.||-|--.+.
T Consensus 99 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 99 TLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred HHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 3455555544 59999999999988888999998998999999998887654
No 90
>PRK06834 hypothetical protein; Provisional
Probab=92.83 E-value=0.37 Score=43.54 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=37.6
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++|+++++|++|+.+++++.+++.+|+++++|+||.|.-.+.
T Consensus 114 gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 114 GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 4689999999999999888888888888899999999986654
No 91
>PRK07846 mycothione reductase; Reviewed
Probab=92.59 E-value=0.42 Score=42.78 Aligned_cols=45 Identities=31% Similarity=0.457 Sum_probs=37.4
Q ss_pred HhcCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 12 LAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 12 l~~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+..+++++++++|++|+.+++++.+.+.+|+++.+|.||+++...
T Consensus 217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCc
Confidence 345678999999999998777777777788889999999998653
No 92
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=92.53 E-value=6.6 Score=34.14 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=32.7
Q ss_pred CceeeCcceeEEEEc-CCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 16 LDIRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 16 l~i~~~~~V~~I~~~-~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
++++ ...|..+..+ ++.+.|++.+|++++||.||.|.....
T Consensus 100 v~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 100 VLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 4564 6688888877 556778888888999999999998765
No 93
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=92.53 E-value=0.47 Score=42.43 Aligned_cols=45 Identities=38% Similarity=0.483 Sum_probs=37.4
Q ss_pred HhcCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 12 LAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 12 l~~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+.+++++++++.|.+|+.+++++.+.+.+|+++.+|.||+++...
T Consensus 220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccC
Confidence 345678999999999998777777777778889999999999753
No 94
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=92.50 E-value=6.8 Score=34.19 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCeeeeecccCC---CCCccchhhHHHHHHHHHHHHHHHH
Q 024393 204 DNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 204 ~~l~~aG~~~~~---~~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
++++++||..+. -.++++.-|+.||..+|+.|.+.+.
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 689999998653 3347999999999999999987664
No 95
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.47 E-value=0.32 Score=45.82 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=40.7
Q ss_pred HHHHHHhc----CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 7 PVINTLAK----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 7 ~l~~~l~~----~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
.+.++|.+ +++|+.+++|++|..++++|.|.+.+|..+.||.||+|+-...
T Consensus 409 ~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 409 ELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 44455533 4679999999999988888888888887788999999988754
No 96
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=92.34 E-value=0.47 Score=42.90 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=38.9
Q ss_pred HHHHHHHh-c-CCceeeCcceeEEEEc-CCceEEE---EcCCc--EEEeCEEEEecChhh
Q 024393 6 LPVINTLA-K-GLDIRLGHRVTKITRH-YIGVKVT---VEGGK--TFVADAVVVAVPLGV 57 (268)
Q Consensus 6 ~~l~~~l~-~-~l~i~~~~~V~~I~~~-~~~v~v~---~~~g~--~~~ad~VI~a~p~~~ 57 (268)
..+.+.+. . +++|+++++|..|... +++|.+. +.+|+ ++.||+||+|+....
T Consensus 188 ~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 188 RKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 34555553 2 5789999999999987 6677765 34453 689999999998775
No 97
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=92.19 E-value=7.6 Score=34.06 Aligned_cols=42 Identities=33% Similarity=0.204 Sum_probs=32.7
Q ss_pred CCceeeCcceeEEEEc-CCce-EEEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRH-YIGV-KVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~-~~~v-~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++++.+++|.+|+.. ++++ .|.+.+| ++.++.||+++....
T Consensus 197 Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 197 GVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred CCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 6789999999999865 4554 4777777 799999988876653
No 98
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=92.06 E-value=0.51 Score=41.54 Aligned_cols=42 Identities=29% Similarity=0.313 Sum_probs=34.0
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++|+++++|++|+.+++++. |++.++ ++.||.||+|+.+..
T Consensus 215 G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 215 GVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 568999999999998887754 666544 799999999998753
No 99
>PRK06116 glutathione reductase; Validated
Probab=92.03 E-value=0.54 Score=41.98 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=37.5
Q ss_pred HHHHHhc-CCceeeCcceeEEEEcCCc-eEEEEcCCcEEEeCEEEEecCh
Q 024393 8 VINTLAK-GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 8 l~~~l~~-~l~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
+.+.|.+ +++|+++++|.+|+.++++ +.+.+.+|+++.+|.||+++..
T Consensus 214 l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 214 LVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 3344433 5789999999999976555 7777778888999999999854
No 100
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.90 E-value=0.47 Score=41.41 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=36.8
Q ss_pred CceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 16 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++++++.|++++.+++++.+.+.+|+++.||.||.|.-...
T Consensus 125 v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 125 VEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred cEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcCh
Confidence 679999999999988888888888888999999999986654
No 101
>PRK09897 hypothetical protein; Provisional
Probab=91.81 E-value=0.52 Score=43.01 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=33.7
Q ss_pred CceeeCcceeEEEEcCCceEEEEcC-CcEEEeCEEEEecCh
Q 024393 16 LDIRLGHRVTKITRHYIGVKVTVEG-GKTFVADAVVVAVPL 55 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~~~v~v~~~~-g~~~~ad~VI~a~p~ 55 (268)
+.++.+++|+.|+..++++.+.+.+ |..+.||+||+|+--
T Consensus 124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 124 VAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred EEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 5688899999999988888888755 467899999999853
No 102
>PRK07190 hypothetical protein; Provisional
Probab=91.41 E-value=0.67 Score=41.91 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=38.3
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 58 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 58 (268)
+++|+++++|++|+.+++++.+.+.+|+++.||+||.|.-.+..
T Consensus 123 Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSF 166 (487)
T ss_pred CCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHH
Confidence 57899999999999988888887778889999999999877653
No 103
>PLN02507 glutathione reductase
Probab=91.36 E-value=0.74 Score=41.77 Aligned_cols=42 Identities=31% Similarity=0.514 Sum_probs=35.9
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++|++++.|.+|+.+++++.+.+.+|+++.+|.||+++...
T Consensus 258 GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCC
Confidence 578999999999997777777777788889999999998643
No 104
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=91.26 E-value=0.69 Score=40.22 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=35.7
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
+++++++++|.+|+.+++.+.+.+.+|+++.+|.||+++..
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 57899999999999877777788888999999999999864
No 105
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=91.13 E-value=0.75 Score=41.26 Aligned_cols=51 Identities=20% Similarity=0.153 Sum_probs=37.6
Q ss_pred HHHHHHHhc-----CCc--eeeCcceeEEEEcCCceEEEEcCC--c--EEEeCEEEEecChh
Q 024393 6 LPVINTLAK-----GLD--IRLGHRVTKITRHYIGVKVTVEGG--K--TFVADAVVVAVPLG 56 (268)
Q Consensus 6 ~~l~~~l~~-----~l~--i~~~~~V~~I~~~~~~v~v~~~~g--~--~~~ad~VI~a~p~~ 56 (268)
..+.+.|.+ +++ |+++++|++|+..+++|.|++.++ . +..+|+||+|+-..
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCC
Confidence 345555533 344 999999999999888888887543 2 45799999999854
No 106
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=91.13 E-value=0.88 Score=40.00 Aligned_cols=50 Identities=26% Similarity=0.370 Sum_probs=38.8
Q ss_pred HHHHHHHhc-----CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 6 LPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 6 ~~l~~~l~~-----~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
..+.+.|.+ +++|+++++|.+|..+++.+.+.+ +++++.+|.||+|+...
T Consensus 105 ~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 105 ADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGL 159 (400)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCc
Confidence 455555544 467999999999988777777776 56689999999999864
No 107
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=90.84 E-value=0.74 Score=41.28 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=32.7
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++|+.+++|.+|+. ++.+.|++.+| ++.||+||+|+-..
T Consensus 197 Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 197 GVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred CCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence 578999999999985 44567877777 79999999998754
No 108
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=90.83 E-value=0.77 Score=40.35 Aligned_cols=43 Identities=37% Similarity=0.515 Sum_probs=34.0
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCC-----cEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGG-----KTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g-----~~~~ad~VI~a~p~~~ 57 (268)
+++|+.+++|.+|+.+++++.+.+.++ .+++||.||+|+-+..
T Consensus 211 G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 211 GVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred CCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 568999999999998777776654332 3689999999998754
No 109
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.82 E-value=0.83 Score=40.95 Aligned_cols=42 Identities=40% Similarity=0.566 Sum_probs=34.7
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCC---cEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~~ 56 (268)
+++|+++++|++|+.+++++.+.+.+| +++.+|.||+++...
T Consensus 227 gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 578999999999998777777776665 678999999998653
No 110
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=90.74 E-value=0.79 Score=41.52 Aligned_cols=51 Identities=35% Similarity=0.526 Sum_probs=36.7
Q ss_pred HHHHHHhc-C-CceeeCcceeEEEEcCCc-eEEEEc---CCc--EEEeCEEEEecChhh
Q 024393 7 PVINTLAK-G-LDIRLGHRVTKITRHYIG-VKVTVE---GGK--TFVADAVVVAVPLGV 57 (268)
Q Consensus 7 ~l~~~l~~-~-l~i~~~~~V~~I~~~~~~-v~v~~~---~g~--~~~ad~VI~a~p~~~ 57 (268)
.|.+.+.+ + ++|+++++|++|+.++++ |.+.+. +|+ ++.||+||+|+....
T Consensus 188 aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 188 QLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 34444443 3 689999999999986554 766543 353 689999999998765
No 111
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=90.72 E-value=0.9 Score=40.67 Aligned_cols=49 Identities=29% Similarity=0.329 Sum_probs=38.4
Q ss_pred HHHHHhc-CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 8 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 8 l~~~l~~-~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+.+.|.+ ++++++++.|++|+.+++++.+.+.+|+++.+|.||+++...
T Consensus 222 l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 222 LSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence 3344433 578999999999998777777777788889999999998654
No 112
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.56 E-value=0.98 Score=39.81 Aligned_cols=42 Identities=21% Similarity=0.082 Sum_probs=33.8
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEcCC--cEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVEGG--KTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~~g--~~~~ad~VI~a~p~~ 56 (268)
+.+|..+++|.++..+++++. |.+.++ .++.||+||+|+-..
T Consensus 277 Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 277 GGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred CCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 457999999999999988766 555665 489999999997654
No 113
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=90.50 E-value=0.99 Score=40.40 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=35.1
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCC--cEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGG--KTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g--~~~~ad~VI~a~p~~ 56 (268)
+++|++++.|.+|+.+++++.+.+.+| +++.+|.||+++...
T Consensus 225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence 578999999999998877777777667 578999999998653
No 114
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.46 E-value=1 Score=40.20 Aligned_cols=47 Identities=32% Similarity=0.451 Sum_probs=37.4
Q ss_pred HHHHh-cCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 9 INTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 9 ~~~l~-~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
.+.|. .++++++++.|.+|+.+++++.+.+.+|+++.+|.||+++..
T Consensus 214 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 214 ARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 33443 367899999999999776667777777888999999999865
No 115
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.34 E-value=1.1 Score=37.34 Aligned_cols=41 Identities=29% Similarity=0.377 Sum_probs=34.9
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
++++++ ..|.+|+..++++.+.+.+++++.+|+||+|+-..
T Consensus 71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 457888 89999998888888888888899999999999763
No 116
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=90.01 E-value=0.78 Score=40.63 Aligned_cols=54 Identities=31% Similarity=0.424 Sum_probs=40.4
Q ss_pred HHHHHHHhc------CCceeeCcceeEEEEcCCc-eEEEEc---CC--cEEEeCEEEEecChhhhh
Q 024393 6 LPVINTLAK------GLDIRLGHRVTKITRHYIG-VKVTVE---GG--KTFVADAVVVAVPLGVLK 59 (268)
Q Consensus 6 ~~l~~~l~~------~l~i~~~~~V~~I~~~~~~-v~v~~~---~g--~~~~ad~VI~a~p~~~l~ 59 (268)
+.|.+.|.+ ++++++++.|+.|.+.+++ |.|.+. +| .++.|+.|++.+-...|.
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 445555533 3579999999999998776 887753 23 578999999999877653
No 117
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=89.71 E-value=1.2 Score=40.02 Aligned_cols=42 Identities=26% Similarity=0.318 Sum_probs=35.5
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++|+++++|.+|+.+++++.+.+.+|+++.+|.||+++...
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCC
Confidence 578999999999987777777777788889999999987643
No 118
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.39 E-value=1.2 Score=39.01 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=34.2
Q ss_pred cCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 14 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 14 ~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
.+++|++++.|++|+. ++.+.+.+.+|+++.+|.||+++..
T Consensus 199 ~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 199 AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 3678999999999986 4556777888989999999998864
No 119
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=89.12 E-value=1.3 Score=41.58 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=41.9
Q ss_pred HHHHHHhcCC---ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 7 PVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 7 ~l~~~l~~~l---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
.|-+.|.+.+ .++++++|++|+.+++++.+.+.+|+++.+|.||.|--.+.
T Consensus 195 ~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 195 TLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred HHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 4556666655 27899999999998889999998998999999999887654
No 120
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=89.00 E-value=1.3 Score=39.64 Aligned_cols=47 Identities=43% Similarity=0.586 Sum_probs=38.0
Q ss_pred HHHHHhc-CCceeeCcceeEEEEcCCceEEEEcCCc--EEEeCEEEEecC
Q 024393 8 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGK--TFVADAVVVAVP 54 (268)
Q Consensus 8 l~~~l~~-~l~i~~~~~V~~I~~~~~~v~v~~~~g~--~~~ad~VI~a~p 54 (268)
+.+.|.+ +++|+++++|++++..++++.+.+.+|+ ++.+|.|++|+-
T Consensus 220 ~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiG 269 (454)
T COG1249 220 LTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIG 269 (454)
T ss_pred HHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccC
Confidence 4445555 3579999999999998887888888775 688999999985
No 121
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=88.97 E-value=0.98 Score=29.55 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.2
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCC
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGG 41 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g 41 (268)
+++|++++.|.+|+.+++++.|++++|
T Consensus 54 gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 54 GVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 578999999999999988866877775
No 122
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=88.80 E-value=1.4 Score=39.20 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=36.4
Q ss_pred CCChHHHHHHHhc-----CCceeeCcceeEEEEcC-CceEEEEcCCcEEEeCEEEEe
Q 024393 2 VRGYLPVINTLAK-----GLDIRLGHRVTKITRHY-IGVKVTVEGGKTFVADAVVVA 52 (268)
Q Consensus 2 ~gG~~~l~~~l~~-----~l~i~~~~~V~~I~~~~-~~v~v~~~~g~~~~ad~VI~a 52 (268)
.-|.+.|++++.+ +-...||++|.+|..++ +++.-...+|+++.|+.||..
T Consensus 228 ~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 228 LYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp TT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEE
T ss_pred ccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEEC
Confidence 3478899999987 33699999999999854 454423348899999999963
No 123
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=88.59 E-value=1.8 Score=38.37 Aligned_cols=41 Identities=20% Similarity=0.002 Sum_probs=32.1
Q ss_pred CCceeeCcceeEEEEcCCceEE-EEcCC--cEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKV-TVEGG--KTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v-~~~~g--~~~~ad~VI~a~p~ 55 (268)
+++|+++++|.+++.+++++.+ .+.+| ..+.+|.||+|+-.
T Consensus 273 Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 273 GGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 5689999999999988877664 34445 35889999999875
No 124
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=88.51 E-value=1.8 Score=38.49 Aligned_cols=53 Identities=25% Similarity=0.275 Sum_probs=37.9
Q ss_pred CChHHHHHHHhc-----CCceeeCcceeEEEEc--CCceE-EEEc-CCcEEEeCEEEEecCh
Q 024393 3 RGYLPVINTLAK-----GLDIRLGHRVTKITRH--YIGVK-VTVE-GGKTFVADAVVVAVPL 55 (268)
Q Consensus 3 gG~~~l~~~l~~-----~l~i~~~~~V~~I~~~--~~~v~-v~~~-~g~~~~ad~VI~a~p~ 55 (268)
+|...+.+.|.+ +++|+++++|++|..+ ++.+. |... ++.++.++.||+|+--
T Consensus 120 ~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 120 GGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 455667777754 4589999999999876 34443 4443 3357899999999974
No 125
>PRK07045 putative monooxygenase; Reviewed
Probab=88.18 E-value=1.7 Score=37.93 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=35.5
Q ss_pred CCceeeCcceeEEEEcCCc--eEEEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++++++++|++|+.++++ +.|++.+|+++.+|.||.|--...
T Consensus 121 gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 121 NVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred CeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 3579999999999987665 357788888999999999887664
No 126
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.13 E-value=1.8 Score=39.48 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=36.5
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++++++++|.+|..+++.+.+.+.+|+++.+|++|+|+-..
T Consensus 281 gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 281 PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 467999999999998877788888888889999999999864
No 127
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=87.62 E-value=1.8 Score=39.11 Aligned_cols=43 Identities=35% Similarity=0.469 Sum_probs=32.7
Q ss_pred CCceeeCcceeEEEEcCC-ceEEEE---cCC--cEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYI-GVKVTV---EGG--KTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~-~v~v~~---~~g--~~~~ad~VI~a~p~~~ 57 (268)
+++|+++++|++|+.+++ +|.+.+ .+| .++.||+||+|+....
T Consensus 192 Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 192 GTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 568999999999998654 566643 234 3689999999998654
No 128
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=87.50 E-value=21 Score=32.03 Aligned_cols=38 Identities=18% Similarity=0.089 Sum_probs=31.2
Q ss_pred CCCeeeeecccC---CCCCccchhhHHHHHHHHHHHHHHHH
Q 024393 203 VDNLFFAGEATS---MSYPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 203 ~~~l~~aG~~~~---~~~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
.+++.++||..+ |-.++++.-|+.||..||+.+.+.+.
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~ 348 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSE 348 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHh
Confidence 468999999865 33457999999999999999987654
No 129
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.42 E-value=2 Score=39.16 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=36.7
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++++++++|.+|...++.+.|.+.+|+++.+|.||+|+-..
T Consensus 280 gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 280 DVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 467999999999999877788888888889999999999874
No 130
>PRK12831 putative oxidoreductase; Provisional
Probab=86.86 E-value=0.71 Score=41.48 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=34.9
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHHHh
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 243 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~~~ 243 (268)
..+..++||.+||...+ ...+..|+..|+.||..|...|..+|
T Consensus 422 ~~Ts~pgVfAaGD~~~g--~~~v~~Ai~~G~~AA~~I~~~L~~~~ 464 (464)
T PRK12831 422 GLTSKEGVFAGGDAVTG--AATVILAMGAGKKAAKAIDEYLSKKW 464 (464)
T ss_pred CccCCCCEEEeCCCCCC--chHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34557899999999865 35788999999999999988876543
No 131
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=86.72 E-value=2.5 Score=37.68 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=32.8
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
++++++++.|.+|+.+++++.+.+.++ ++.+|.||+++..
T Consensus 213 gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 213 GVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 578999999999998777777766555 5889999999754
No 132
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=86.39 E-value=2.6 Score=38.14 Aligned_cols=48 Identities=31% Similarity=0.422 Sum_probs=36.2
Q ss_pred HHHHHh-cCCceeeCcceeEEEEcCCc-eEEEEcCCcEEEeCEEEEecCh
Q 024393 8 VINTLA-KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 8 l~~~l~-~~l~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
+.+.|. ++++|++++.|++|+.++++ ..+.+.+|+++.+|.||+++-.
T Consensus 237 l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 237 LTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 344453 35789999999999876544 5566667888999999998864
No 133
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=86.34 E-value=1.5 Score=40.04 Aligned_cols=41 Identities=34% Similarity=0.235 Sum_probs=30.8
Q ss_pred ceeeCcceeEEEEcC-----CceEEEEcCC---cEEEeCEEEEecChhh
Q 024393 17 DIRLGHRVTKITRHY-----IGVKVTVEGG---KTFVADAVVVAVPLGV 57 (268)
Q Consensus 17 ~i~~~~~V~~I~~~~-----~~v~v~~~~g---~~~~ad~VI~a~p~~~ 57 (268)
.|++|+.|++|++.+ ++|.|++.++ ++..+|+||+|+-...
T Consensus 102 ~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 102 HIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp GEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred eEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence 399999999999754 4588887543 3456999999987654
No 134
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=86.29 E-value=1.9 Score=37.22 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=35.0
Q ss_pred HHHHHHHhc--CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 6 LPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 6 ~~l~~~l~~--~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
..|.+++.+ +++|+.+++|.+|+.. .|.+.+| ++.||+||+|+-+..
T Consensus 149 ~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 149 PALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence 345566543 6889999999999743 5666666 578999999998753
No 135
>PRK06475 salicylate hydroxylase; Provisional
Probab=86.20 E-value=2.4 Score=37.18 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=34.3
Q ss_pred CCceeeCcceeEEEEcCCceEEEE---cCCcEEEeCEEEEecChhhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGVL 58 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~---~~g~~~~ad~VI~a~p~~~l 58 (268)
+++|+++++|++++.+++++.+++ .+++++++|.||-|--.+..
T Consensus 122 ~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 122 GIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred CcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 357999999999998888877765 33457899999988776654
No 136
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.19 E-value=2.6 Score=37.83 Aligned_cols=41 Identities=34% Similarity=0.467 Sum_probs=32.1
Q ss_pred CCceeeCcceeEEEEcCCceEEEEc--CC--cEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVE--GG--KTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~--~g--~~~~ad~VI~a~p~ 55 (268)
+++|+++++|++|+.+++++.+.+. +| +++.+|.||+++-.
T Consensus 227 gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 227 GVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred CCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 5789999999999877666655543 55 47899999999754
No 137
>PTZ00052 thioredoxin reductase; Provisional
Probab=86.16 E-value=2.6 Score=38.23 Aligned_cols=49 Identities=22% Similarity=0.177 Sum_probs=37.7
Q ss_pred HHHHHh-cCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 8 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 8 l~~~l~-~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+.+.|. +++++++++.|.+|+..++.+.+.+.+|+++.+|.||+++...
T Consensus 228 l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 228 VVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 334443 3578999999999987666666777788889999999998653
No 138
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=86.14 E-value=2.5 Score=36.96 Aligned_cols=39 Identities=36% Similarity=0.337 Sum_probs=31.8
Q ss_pred CceeeCcceeEEEEcCCceE-EEEcCCcEEEeCEEEEecCh
Q 024393 16 LDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~ 55 (268)
++|+ ...|+.|..+++++. |.+.+|+.+.+|.||+|+-.
T Consensus 111 l~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 111 LTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred eEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 4564 678999999998855 99999999999999999977
No 139
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=85.85 E-value=2.6 Score=37.99 Aligned_cols=48 Identities=31% Similarity=0.492 Sum_probs=35.2
Q ss_pred HHHHhc-CCceeeCcceeEEEEcCCceEEEEcC--C--cEEEeCEEEEecChh
Q 024393 9 INTLAK-GLDIRLGHRVTKITRHYIGVKVTVEG--G--KTFVADAVVVAVPLG 56 (268)
Q Consensus 9 ~~~l~~-~l~i~~~~~V~~I~~~~~~v~v~~~~--g--~~~~ad~VI~a~p~~ 56 (268)
.+.|.+ +++|+++++|.+|+.+++++.+...+ | +++.+|.||+++...
T Consensus 231 ~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 231 AKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCc
Confidence 344433 57899999999999877766665443 3 468999999998643
No 140
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=85.65 E-value=3.1 Score=37.24 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=33.6
Q ss_pred CCceeeCcceeEEEEcCCc-eEEEEcCC-cEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIG-VKVTVEGG-KTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~-v~v~~~~g-~~~~ad~VI~a~p~~ 56 (268)
++++++++.|++|+.++++ +.+.+.+| +++.+|.||+++...
T Consensus 221 gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 221 GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCC
Confidence 5789999999999876444 66777677 578999999998653
No 141
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=85.03 E-value=2.7 Score=37.66 Aligned_cols=52 Identities=27% Similarity=0.302 Sum_probs=36.6
Q ss_pred ChHHHHHHHhc-----CCceeeCcceeEEEEcCCceE-EEE--cCC--cEEEeCEEEEecCh
Q 024393 4 GYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTV--EGG--KTFVADAVVVAVPL 55 (268)
Q Consensus 4 G~~~l~~~l~~-----~l~i~~~~~V~~I~~~~~~v~-v~~--~~g--~~~~ad~VI~a~p~ 55 (268)
|...+.+.|.+ +++|+++++|++|..+++++. |.. .++ ..+.++.||+|+-.
T Consensus 129 ~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 129 GGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 33456666644 468999999999998777654 444 233 46789999999853
No 142
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=84.81 E-value=3.4 Score=36.79 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=32.4
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
+++++++++|.+|+.+++++.+.. +|+++.+|.||+++..
T Consensus 212 GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~ 251 (438)
T PRK07251 212 GITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGR 251 (438)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCC
Confidence 678999999999998666666654 5678999999998754
No 143
>PRK14727 putative mercuric reductase; Provisional
Probab=84.70 E-value=3.4 Score=37.26 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=33.8
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++|+++++|++|+.+++++.+.+.++ ++.+|.||+++...
T Consensus 242 GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 242 GIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCC
Confidence 578999999999997777777766555 68999999998764
No 144
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=84.29 E-value=2.8 Score=38.19 Aligned_cols=45 Identities=36% Similarity=0.278 Sum_probs=35.1
Q ss_pred hcCCceeeCcceeEEEEcCCceEEEEcC---Cc--EEEeCEEEEecChhh
Q 024393 13 AKGLDIRLGHRVTKITRHYIGVKVTVEG---GK--TFVADAVVVAVPLGV 57 (268)
Q Consensus 13 ~~~l~i~~~~~V~~I~~~~~~v~v~~~~---g~--~~~ad~VI~a~p~~~ 57 (268)
..+++|+.+++|.+|..+++.+.|.+.+ |+ ++.||.||.|+-+..
T Consensus 167 ~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 167 ERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 3467899999999999887777666543 53 689999999998743
No 145
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=84.27 E-value=33 Score=31.32 Aligned_cols=45 Identities=27% Similarity=0.231 Sum_probs=33.8
Q ss_pred hcCCceeeCcceeEEEEcCCceE-EEE---cCC--cEEEeCEEEEecChhh
Q 024393 13 AKGLDIRLGHRVTKITRHYIGVK-VTV---EGG--KTFVADAVVVAVPLGV 57 (268)
Q Consensus 13 ~~~l~i~~~~~V~~I~~~~~~v~-v~~---~~g--~~~~ad~VI~a~p~~~ 57 (268)
..+++|+++++|++|..+++++. |++ .+| .++.|+.||.|+-+..
T Consensus 140 ~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 140 EHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 33678999999999998877643 443 234 3689999999997654
No 146
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=83.81 E-value=39 Score=31.81 Aligned_cols=43 Identities=21% Similarity=0.084 Sum_probs=31.5
Q ss_pred CCceeeCcceeEEEEc--CCceE-EEE---cCCc--EEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRH--YIGVK-VTV---EGGK--TFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~--~~~v~-v~~---~~g~--~~~ad~VI~a~p~~~ 57 (268)
+++|+.+++|.+|..+ ++++. |+. .+|+ ++.+|.||.|+-+..
T Consensus 246 Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 246 GAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred CcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 5689999999999876 35433 333 2444 579999999998763
No 147
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=83.55 E-value=3.7 Score=36.98 Aligned_cols=49 Identities=33% Similarity=0.365 Sum_probs=36.3
Q ss_pred HHHHHhcCCceeeCcceeEEEEcCCceEEEEcC--C--cEEEeCEEEEecChh
Q 024393 8 VINTLAKGLDIRLGHRVTKITRHYIGVKVTVEG--G--KTFVADAVVVAVPLG 56 (268)
Q Consensus 8 l~~~l~~~l~i~~~~~V~~I~~~~~~v~v~~~~--g--~~~~ad~VI~a~p~~ 56 (268)
+.+.|.+.++|++++.|++|+..++++.+.+.+ + +++.+|.||+++...
T Consensus 221 ~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 221 FTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred HHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccc
Confidence 344554457899999999999877776665433 2 468999999998754
No 148
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.44 E-value=3.4 Score=37.52 Aligned_cols=45 Identities=24% Similarity=0.124 Sum_probs=35.3
Q ss_pred hcCCceeeCcceeEEEEcCCceEEEEcCC----cEEEeCEEEEecChhh
Q 024393 13 AKGLDIRLGHRVTKITRHYIGVKVTVEGG----KTFVADAVVVAVPLGV 57 (268)
Q Consensus 13 ~~~l~i~~~~~V~~I~~~~~~v~v~~~~g----~~~~ad~VI~a~p~~~ 57 (268)
..+++|+.+++|.+|..+++.+.|.+.++ .++.||.||.|+-+..
T Consensus 167 ~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 167 ERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 34678999999999998877777665443 3588999999998753
No 149
>PRK14694 putative mercuric reductase; Provisional
Probab=83.22 E-value=4.3 Score=36.48 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=32.7
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
++++++++.|.+|+.+++.+.+.+.++ ++.+|.||+++...
T Consensus 232 GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~ 272 (468)
T PRK14694 232 GIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRT 272 (468)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCC
Confidence 578999999999987776666666444 79999999988543
No 150
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=83.16 E-value=2.7 Score=36.99 Aligned_cols=53 Identities=36% Similarity=0.398 Sum_probs=35.8
Q ss_pred ChHHHHHHHhcC-----CceeeCcceeEEEEcCCceE-EEEc---CCc--EEEeCEEEEecChh
Q 024393 4 GYLPVINTLAKG-----LDIRLGHRVTKITRHYIGVK-VTVE---GGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 4 G~~~l~~~l~~~-----l~i~~~~~V~~I~~~~~~v~-v~~~---~g~--~~~ad~VI~a~p~~ 56 (268)
+...+.+.|.+. ++|+++++|+++..++++|. |... +|+ ++.|+.||+|+--.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~ 202 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGF 202 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----B
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcc
Confidence 445566666554 48999999999999988755 4443 454 57799999998543
No 151
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=82.60 E-value=3.9 Score=39.46 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=34.6
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++|++++.|.+|..++....|.+.+|+++.+|.||+++...
T Consensus 196 GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 196 GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCC
Confidence 578999999999986554455778889999999999998643
No 152
>PRK06175 L-aspartate oxidase; Provisional
Probab=82.51 E-value=4.7 Score=35.91 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=34.0
Q ss_pred HHHHHHhc--CCceeeCcceeEEEEcCCceE-EE-EcCCc--EEEeCEEEEecCh
Q 024393 7 PVINTLAK--GLDIRLGHRVTKITRHYIGVK-VT-VEGGK--TFVADAVVVAVPL 55 (268)
Q Consensus 7 ~l~~~l~~--~l~i~~~~~V~~I~~~~~~v~-v~-~~~g~--~~~ad~VI~a~p~ 55 (268)
.|.+++.+ +++|+++++|++|..+++++. |. ..+++ ++.|+.||+|+--
T Consensus 133 ~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 133 ILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 34444432 578999999999987766533 32 23443 5789999999865
No 153
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=82.15 E-value=5.2 Score=36.20 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHhc-CCceeeCcceeEEEEcCCceEEEEcCC---cEEEeCEEEEecChh
Q 024393 10 NTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLG 56 (268)
Q Consensus 10 ~~l~~-~l~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~~ 56 (268)
+.|.+ +++|++++.+.+|+..++++.++..++ +++.+|.||+++...
T Consensus 228 ~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 228 EHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred HHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence 34433 678999999999987766666655444 478999999998643
No 154
>PRK06370 mercuric reductase; Validated
Probab=81.60 E-value=5.4 Score=35.80 Aligned_cols=42 Identities=26% Similarity=0.455 Sum_probs=31.8
Q ss_pred CCceeeCcceeEEEEcCCceEEEE--c-CCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTV--E-GGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~--~-~g~~~~ad~VI~a~p~~ 56 (268)
+++|+++++|.+|+.+++++.+.. . +++++.+|.||+++...
T Consensus 226 GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 226 GIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 578999999999998766554433 2 34578999999998643
No 155
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=81.16 E-value=5.4 Score=35.86 Aligned_cols=42 Identities=40% Similarity=0.560 Sum_probs=31.8
Q ss_pred CCceeeCcceeEEEEcCCceEEEEc---C--CcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVE---G--GKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~---~--g~~~~ad~VI~a~p~~ 56 (268)
+++|++++.|.+|+.+++++.+... + ++++.+|.||+++...
T Consensus 229 gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 229 GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 5789999999999876666554432 2 3578999999998643
No 156
>PRK13748 putative mercuric reductase; Provisional
Probab=80.61 E-value=5.4 Score=36.73 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=33.2
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++|++++.|.+|+.+++.+.+.+.++ ++.+|.||+++...
T Consensus 324 gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 324 GIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCC
Confidence 578999999999997777666766555 69999999998643
No 157
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=80.51 E-value=3.2 Score=35.13 Aligned_cols=42 Identities=31% Similarity=0.300 Sum_probs=32.2
Q ss_pred CceeeCcceeEEEEcCCceE-EEE--cCC--cEEEeCEEEEecChhh
Q 024393 16 LDIRLGHRVTKITRHYIGVK-VTV--EGG--KTFVADAVVVAVPLGV 57 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~~~v~-v~~--~~g--~~~~ad~VI~a~p~~~ 57 (268)
++|.+|++|..|..++++|. |.+ .+| ..+.+|.||+|+--..
T Consensus 160 ~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 160 VKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred HhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcC
Confidence 36999999999998888865 544 455 3567999999986544
No 158
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=80.47 E-value=6 Score=35.46 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=31.8
Q ss_pred CCceeeCcceeEEEEcCCceEEEEc---CCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVE---GGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~---~g~~~~ad~VI~a~p~ 55 (268)
+++|+++++|++|+.+++.+.+.+. +++++.+|.||+++..
T Consensus 221 gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 221 GIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred CCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence 5789999999999987665555443 2367999999999864
No 159
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=80.33 E-value=4.1 Score=33.90 Aligned_cols=50 Identities=22% Similarity=0.153 Sum_probs=33.7
Q ss_pred HHHHHhc-CCceeeCcceeEEEEc--CCc---eEEEEcCCc----EEEeCEEEEecChhh
Q 024393 8 VINTLAK-GLDIRLGHRVTKITRH--YIG---VKVTVEGGK----TFVADAVVVAVPLGV 57 (268)
Q Consensus 8 l~~~l~~-~l~i~~~~~V~~I~~~--~~~---v~v~~~~g~----~~~ad~VI~a~p~~~ 57 (268)
|..++.+ .++|++++.|++|..+ +++ |.+...+++ ++.++.||+++-.=.
T Consensus 199 L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 199 LPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp HHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHH
T ss_pred cchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCC
Confidence 5566655 6899999999999664 444 334444454 456899999986533
No 160
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=80.05 E-value=7.4 Score=34.87 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=31.5
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCC--cEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGG--KTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g--~~~~ad~VI~a~p~~ 56 (268)
+++|++++.|.+|+.+++.+.+.. +| +++.+|.||+++...
T Consensus 225 GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 225 GVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred CCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCCc
Confidence 578999999999987666555544 34 368999999998743
No 161
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=79.41 E-value=5.8 Score=35.12 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=31.8
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
++++++++.|.+|..++ .+ +...+|+++.+|.||++++..
T Consensus 193 gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 193 EINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred CCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCcc
Confidence 57899999999997643 33 455678899999999998753
No 162
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=79.36 E-value=5.6 Score=38.71 Aligned_cols=49 Identities=10% Similarity=0.207 Sum_probs=36.9
Q ss_pred HHHHHh-cCCceeeCcceeEEEEcC--CceEEEEcCCcEEEeCEEEEecChh
Q 024393 8 VINTLA-KGLDIRLGHRVTKITRHY--IGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 8 l~~~l~-~~l~i~~~~~V~~I~~~~--~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+.+.|. .+++|++++.|++|..++ ....+.+.+|+++.+|.||+++...
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 344443 367899999999998653 2355778889999999999998644
No 163
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=78.96 E-value=7.9 Score=34.84 Aligned_cols=47 Identities=36% Similarity=0.411 Sum_probs=33.3
Q ss_pred HHHhc-CCceeeCcceeEEEE-cCCceE-EEEcCC--cEEEeCEEEEecChh
Q 024393 10 NTLAK-GLDIRLGHRVTKITR-HYIGVK-VTVEGG--KTFVADAVVVAVPLG 56 (268)
Q Consensus 10 ~~l~~-~l~i~~~~~V~~I~~-~~~~v~-v~~~~g--~~~~ad~VI~a~p~~ 56 (268)
+.|.+ +++|++++.|.+|+. .++++. +.+.+| +++.+|.||+++...
T Consensus 229 ~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 229 RLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 44433 678999999999986 234443 444566 468999999999764
No 164
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=78.96 E-value=7.3 Score=34.61 Aligned_cols=42 Identities=31% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCceeeCcceeEEEEcC-Cce---EEEEcCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHY-IGV---KVTVEGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~-~~v---~v~~~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|+++++|++|..++ +++ .+...+++ .+.+|.||+|+-..
T Consensus 144 gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 144 GIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred CCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 46899999999999864 443 33333443 46799999998643
No 165
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=78.86 E-value=5.8 Score=35.18 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=29.9
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
+++|+++++|.+|..+ .|.+.+|+++.+|.||+++..
T Consensus 242 gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 242 GVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEccCC
Confidence 5789999999998742 355678889999999998763
No 166
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=78.86 E-value=4.5 Score=35.54 Aligned_cols=38 Identities=37% Similarity=0.545 Sum_probs=30.6
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCc-EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~-~~~ad~VI~a~p~~ 56 (268)
+++|+++++|++|+.+ .|++.+|+ ++.++.+|+|+-..
T Consensus 223 GV~v~l~~~Vt~v~~~----~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 223 GVEVLLGTPVTEVTPD----GVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CCEEEcCCceEEECCC----cEEEccCCeeEecCEEEEcCCCc
Confidence 5689999999999864 45555666 59999999999764
No 167
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=78.72 E-value=2.3 Score=40.10 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=33.5
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
+++..++||-+||...+ ...+..|+..|+.||..|...|..
T Consensus 613 ~~Ts~~gVfAaGD~~~g--~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 613 YQTSNPKIFAGGDAVRG--ADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cccCCCCEEEcCCcCCC--CcHHHHHHHHHHHHHHHHHHHhCc
Confidence 35567899999999865 346789999999999999887653
No 168
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=78.60 E-value=5.4 Score=34.39 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=30.0
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
++++++++.|.+|+. + .+.+.+|+++.+|.||++++.
T Consensus 205 gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 205 GIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGA 241 (364)
T ss_pred CCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCC
Confidence 578999999998863 2 455668889999999999874
No 169
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=78.50 E-value=7 Score=34.76 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=29.8
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
+++|+++++|.+|+.+++...+.+. +.++.+|.||+++..
T Consensus 205 gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~vi~a~G~ 244 (444)
T PRK09564 205 GVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVVIVATGV 244 (444)
T ss_pred CCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEEEECcCC
Confidence 5789999999999754333345444 457999999998875
No 170
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=78.38 E-value=8.3 Score=35.12 Aligned_cols=40 Identities=35% Similarity=0.379 Sum_probs=30.2
Q ss_pred CCceeeCcceeEEEEcCCceE---EEEcCC--cEEEeCEEEEecC
Q 024393 15 GLDIRLGHRVTKITRHYIGVK---VTVEGG--KTFVADAVVVAVP 54 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~---v~~~~g--~~~~ad~VI~a~p 54 (268)
+++|+++++|++|..+++++. +...++ .++.+|.||+|+-
T Consensus 204 gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 204 KIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred CCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 468999999999987776543 333343 3688999999995
No 171
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=78.25 E-value=4.6 Score=35.72 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=33.5
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcC-CcEEE--eCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEG-GKTFV--ADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~-g~~~~--ad~VI~a~p~~ 56 (268)
++++++++.|++|+.+++.+.+...+ ++++. +|+||+|+-..
T Consensus 58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGAS 102 (427)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCC
Confidence 56788999999999888777776543 45777 99999999753
No 172
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=78.03 E-value=7.7 Score=35.90 Aligned_cols=51 Identities=24% Similarity=0.193 Sum_probs=34.4
Q ss_pred HHHHHHHhc-----CCceeeCcceeEEEEcCCceE-EEE-cCCc--EEEe-CEEEEecChh
Q 024393 6 LPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTV-EGGK--TFVA-DAVVVAVPLG 56 (268)
Q Consensus 6 ~~l~~~l~~-----~l~i~~~~~V~~I~~~~~~v~-v~~-~~g~--~~~a-d~VI~a~p~~ 56 (268)
+.|.++|.+ +++|+++++|+++..++++|. |.. .+|+ .+.+ +.||+|+--.
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf 277 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGF 277 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCc
Confidence 667777754 468999999999987666544 432 3443 3455 5799988543
No 173
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=78.02 E-value=3.2 Score=35.73 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
+..+++|.+||.... +..+..|+..|..||..|.+.|..
T Consensus 313 t~~~~vyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 313 TSREGVFAAGDVVTG--PSKIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred cCCCCEEEEcccccC--cchHHHHHHHHHHHHHHHHHHHhc
Confidence 456899999998864 357889999999999999887743
No 174
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.92 E-value=3.1 Score=39.08 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=34.6
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
+++..++||.+||...+ ...+..|+..|+.||..|...|.++
T Consensus 596 ~~Ts~~gVfA~GD~~~g--~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 596 TQTHLKKVFAGGDAVHG--ADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred cccCCCCEEEcCCCCCC--chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567899999998865 3467889999999999999888765
No 175
>PRK08071 L-aspartate oxidase; Provisional
Probab=77.86 E-value=5.3 Score=36.43 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=32.2
Q ss_pred HHhcCCceeeCcceeEEEEcCCceE-EEE--cCCc--EEEeCEEEEecCh
Q 024393 11 TLAKGLDIRLGHRVTKITRHYIGVK-VTV--EGGK--TFVADAVVVAVPL 55 (268)
Q Consensus 11 ~l~~~l~i~~~~~V~~I~~~~~~v~-v~~--~~g~--~~~ad~VI~a~p~ 55 (268)
++..+++|+.++.|.+|..+++++. +.. .+|+ .+.|+.||+|+-.
T Consensus 139 ~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 139 ELVPHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHhcCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence 3334678999999999987776644 433 2343 6789999999955
No 176
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=77.80 E-value=8.3 Score=35.82 Aligned_cols=42 Identities=26% Similarity=0.201 Sum_probs=30.5
Q ss_pred CCceeeCcceeEEEEcCCceE-EEE--cCCc-EEEe-CEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTV--EGGK-TFVA-DAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~--~~g~-~~~a-d~VI~a~p~~ 56 (268)
+++|+++++|++|..+++++. |.. .++. ++.+ +.||+|+-..
T Consensus 231 Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 231 GVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred CCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 568999999999987766643 333 3332 4778 8999998654
No 177
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=77.67 E-value=8.1 Score=35.59 Aligned_cols=45 Identities=31% Similarity=0.195 Sum_probs=34.0
Q ss_pred hcCCceeeCcceeEEEEcCCceE-EEE---cCC--cEEEeCEEEEecChhh
Q 024393 13 AKGLDIRLGHRVTKITRHYIGVK-VTV---EGG--KTFVADAVVVAVPLGV 57 (268)
Q Consensus 13 ~~~l~i~~~~~V~~I~~~~~~v~-v~~---~~g--~~~~ad~VI~a~p~~~ 57 (268)
..+++|+++++|++|..+++++. |++ .+| .++.||.||.|+-+..
T Consensus 161 ~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 161 EHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred hCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 34678999999999998877643 443 233 3789999999998754
No 178
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=77.65 E-value=3.5 Score=37.13 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=33.3
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
+.+..++||.+||...+ ...+..|+..|+.||..|...|..
T Consensus 426 ~~Ts~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 426 YQTSNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred ccCCCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhc
Confidence 34567899999999875 236778999999999999888754
No 179
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=77.39 E-value=5.1 Score=35.62 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCceeeCcceeEEEEcCCceEEEEc-CCcEEE--eCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVE-GGKTFV--ADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~-~g~~~~--ad~VI~a~p~~ 56 (268)
++++++++.|.+|+.+++.+.+... +|+++. +|++|+|+-..
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 5678999999999988887777652 355666 99999999764
No 180
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=77.36 E-value=6.5 Score=34.25 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=36.8
Q ss_pred CCChHHHHHHHhcC-----CceeeCcceeEEEEc-CCceEEEEcCCcEEEeCEEEE
Q 024393 2 VRGYLPVINTLAKG-----LDIRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVV 51 (268)
Q Consensus 2 ~gG~~~l~~~l~~~-----l~i~~~~~V~~I~~~-~~~v~v~~~~g~~~~ad~VI~ 51 (268)
..|.+.|++.+++. -.+.+|+++.+|... ++++.....+++...+..+|+
T Consensus 228 ~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~ 283 (440)
T KOG1439|consen 228 LYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVIC 283 (440)
T ss_pred ccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEe
Confidence 46899999999883 379999999999984 444443333445667777776
No 181
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=77.27 E-value=8.6 Score=34.41 Aligned_cols=46 Identities=35% Similarity=0.442 Sum_probs=32.7
Q ss_pred HHHhcCCceeeCcceeEEEEcCC-ceEEEEcCC--cEEEeCEEEEecCh
Q 024393 10 NTLAKGLDIRLGHRVTKITRHYI-GVKVTVEGG--KTFVADAVVVAVPL 55 (268)
Q Consensus 10 ~~l~~~l~i~~~~~V~~I~~~~~-~v~v~~~~g--~~~~ad~VI~a~p~ 55 (268)
+.|.+.++|+++++|.+|+.+++ ++.++..++ +++.+|.||+++..
T Consensus 218 ~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 218 KILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred HHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence 34444488999999999987654 455433233 57899999998754
No 182
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=77.19 E-value=6.6 Score=33.22 Aligned_cols=43 Identities=44% Similarity=0.528 Sum_probs=31.4
Q ss_pred CCceeeCcceeEEEEcCCceEEEEc---CC--cEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVE---GG--KTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~---~g--~~~~ad~VI~a~p~~~ 57 (268)
+++|+++++|.+++.+++++.+... +| ++++||.||-|--.+.
T Consensus 125 gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 125 GVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp TEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred hhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence 4689999999999988887654432 34 3689999998876654
No 183
>PRK07538 hypothetical protein; Provisional
Probab=77.10 E-value=7.2 Score=34.33 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=35.5
Q ss_pred HHHHHhcC---CceeeCcceeEEEEcCCceEEEEcCC-----cEEEeCEEEEecChhhh
Q 024393 8 VINTLAKG---LDIRLGHRVTKITRHYIGVKVTVEGG-----KTFVADAVVVAVPLGVL 58 (268)
Q Consensus 8 l~~~l~~~---l~i~~~~~V~~I~~~~~~v~v~~~~g-----~~~~ad~VI~a~p~~~l 58 (268)
|.+++.+. ..|+++++|++++.+++++.+.+.++ ++++||.||-|--.+..
T Consensus 108 L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 108 LLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 44444442 25999999999998777655554332 48899998888876543
No 184
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=76.94 E-value=4.2 Score=35.75 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=30.9
Q ss_pred CCeeeeecccC---CCCCccchhhHHHHHHHHHHHHHHHH
Q 024393 204 DNLFFAGEATS---MSYPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 204 ~~l~~aG~~~~---~~~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
+|+.++||..+ |-.++++.-|+.||..||+.+.+.++
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 68999999865 33457999999999999999987654
No 185
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=76.41 E-value=53 Score=28.93 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=27.9
Q ss_pred CeeeeecccCC---CCCccchhhHHHHHHHHHHHHHHHH
Q 024393 205 NLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 205 ~l~~aG~~~~~---~~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
|+.++||..|+ ..+.+++-|++-+...|+.+-+...
T Consensus 289 ~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 289 NVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred eEEEecccccccCCcccccccchHHHHHHHHHHHHHhcc
Confidence 89999999885 3445888888888888887766544
No 186
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=76.41 E-value=3.4 Score=36.98 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=33.5
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
.++..++||.+||...+ ...+..|+..|..||..|...|..+
T Consensus 413 ~~Ts~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 413 GRTSLPGVFAGGDIVTG--AATVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred CccCCCCEEEeCCcCCC--chHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34457899999998854 2467789999999999998887653
No 187
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=76.19 E-value=5.5 Score=34.93 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=32.7
Q ss_pred cCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 14 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 14 ~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
.++++++++.|.+|+.++.. |.+.+|+++.+|++|+|+-..
T Consensus 71 ~~i~~~~g~~V~~id~~~~~--v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTRE--LVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred CCCEEEcCCEEEEEECCCCE--EEECCCCEEEcCEEEEccCCC
Confidence 36789999999999887654 445578889999999999754
No 188
>PLN02697 lycopene epsilon cyclase
Probab=76.10 E-value=65 Score=29.67 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=33.0
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
++++ +++.|++|+.+++++. +.+.+|+++.||.||.|.-...
T Consensus 206 GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 206 GVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred CCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 4566 7889999998777755 4556788899999999987654
No 189
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=75.94 E-value=2.9 Score=37.38 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=30.7
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~ 238 (268)
+++..++||.+||.... ...+..|+..|+.||..|...
T Consensus 411 ~~Ts~~~VfA~GD~~~g--~~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 411 QRTSIPGVFAGGDIILG--AATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CccCCCCEEEecCCCCC--cHHHHHHHHHHHHHHHHHHhh
Confidence 34567899999999864 346789999999999998754
No 190
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=75.61 E-value=4.9 Score=34.93 Aligned_cols=39 Identities=26% Similarity=0.208 Sum_probs=30.9
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++++++++|++|+.++..+. + +++++.+|++|+|+-..
T Consensus 72 gv~~~~~~~V~~id~~~~~v~--~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQVVK--S-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred CCEEECCCEEEEEECCCCEEE--E-CCeEEeCCEEEECCCCC
Confidence 567899999999998765443 3 56789999999999754
No 191
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=75.47 E-value=5.2 Score=38.62 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=32.8
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++++++++|++|+.++. .|.+.+|+++.+|++|+|+-..
T Consensus 68 gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCC
Confidence 578999999999987654 4556678889999999999754
No 192
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=75.36 E-value=4.2 Score=31.45 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=35.1
Q ss_pred HHHHH-hcCCceeeCcceeEEEEcCCc-----eEE---EEcCCcEEEeCEEEEecChh
Q 024393 8 VINTL-AKGLDIRLGHRVTKITRHYIG-----VKV---TVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 8 l~~~l-~~~l~i~~~~~V~~I~~~~~~-----v~v---~~~~g~~~~ad~VI~a~p~~ 56 (268)
+.+.+ ...+++++++.|.+|....+. +.+ ...++.++.+|+||+|+-..
T Consensus 64 ~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 64 LVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred cccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 34444 445689999999999988774 233 22345789999999999854
No 193
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=74.94 E-value=9 Score=34.12 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=32.9
Q ss_pred HHHHHhc-CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 8 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 8 l~~~l~~-~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+.+.|.+ +++++++++|++|+. . .+++.+|+++.+|.||+++...
T Consensus 195 l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 195 ILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred HHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCC
Confidence 3344433 578999999999963 2 4555678889999999998753
No 194
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=74.88 E-value=17 Score=31.18 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=36.5
Q ss_pred CceeeCcceeEEEEc---CCceEEEEcCCcEEEeCEEEEecChhhhh
Q 024393 16 LDIRLGHRVTKITRH---YIGVKVTVEGGKTFVADAVVVAVPLGVLK 59 (268)
Q Consensus 16 l~i~~~~~V~~I~~~---~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 59 (268)
+.++-+..|..+... +..+.|.|.+|.++.|+.+|+|+-+...+
T Consensus 168 ~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 168 VIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred eEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 469999999998854 34588999999899999999999987653
No 195
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=74.08 E-value=6.1 Score=35.19 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=33.3
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcC-Cc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEG-GK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~-g~--~~~ad~VI~a~p~~ 56 (268)
+++++++++|.+|+.+++.+.+.... ++ ++.+|++|+|+-..
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCC
Confidence 57899999999999988888877643 23 36799999999654
No 196
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=74.05 E-value=3.2 Score=34.41 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=29.2
Q ss_pred CCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~ 238 (268)
+..+|+|.+||..... ...+..|+..|..||..|...
T Consensus 263 t~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 263 TSVPGVFAAGDVRDKG-YRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred cCCCCEEEeecccCcc-hhhhhhhhhhHHHHHHHHHhh
Confidence 3468999999998732 246778999999999998753
No 197
>PLN02661 Putative thiazole synthesis
Probab=73.65 E-value=4 Score=35.19 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=31.5
Q ss_pred CCCeeeeecccCC-----CCCccchhhHHHHHHHHHHHHHHHHHH
Q 024393 203 VDNLFFAGEATSM-----SYPGSVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 203 ~~~l~~aG~~~~~-----~~~g~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
.++||.+|-.... +-+..+-|=+.||++||+.|++.|+.+
T Consensus 286 ~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~~ 330 (357)
T PLN02661 286 VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLP 330 (357)
T ss_pred cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHccc
Confidence 5899999988642 223467778899999999999998753
No 198
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=73.05 E-value=4 Score=39.19 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=33.0
Q ss_pred cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
.+..++||-+||...+ ...+-.|+..|+.||..|.+.|..
T Consensus 712 ~Ts~~gVfA~GD~~~g--~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 712 QSSIPGIYAGGDIVRG--GATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCCCCCEEEeCCccCC--cHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4557899999999865 346889999999999999887754
No 199
>PRK07121 hypothetical protein; Validated
Probab=72.97 E-value=13 Score=33.62 Aligned_cols=52 Identities=29% Similarity=0.245 Sum_probs=34.9
Q ss_pred hHHHHHHHhc-----CCceeeCcceeEEEEcC-CceE-EEEc-CC--cEEEe-CEEEEecChh
Q 024393 5 YLPVINTLAK-----GLDIRLGHRVTKITRHY-IGVK-VTVE-GG--KTFVA-DAVVVAVPLG 56 (268)
Q Consensus 5 ~~~l~~~l~~-----~l~i~~~~~V~~I~~~~-~~v~-v~~~-~g--~~~~a-d~VI~a~p~~ 56 (268)
...+.+.|.+ +++|+++++|++|..++ +++. |... ++ .++.+ +.||+|+-..
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~ 238 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF 238 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence 3445565544 46899999999998764 4543 4432 33 25778 9999998643
No 200
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=72.96 E-value=10 Score=33.95 Aligned_cols=40 Identities=35% Similarity=0.266 Sum_probs=31.9
Q ss_pred ceeeCcceeEEEEcCC--ceEEEEcCCcE--EEeCEEEEecChh
Q 024393 17 DIRLGHRVTKITRHYI--GVKVTVEGGKT--FVADAVVVAVPLG 56 (268)
Q Consensus 17 ~i~~~~~V~~I~~~~~--~v~v~~~~g~~--~~ad~VI~a~p~~ 56 (268)
.|++++.|+.+..+.+ .|.|++.+|.+ ++||+||+|+-..
T Consensus 100 ~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~ 143 (443)
T COG2072 100 QIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHL 143 (443)
T ss_pred EEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCC
Confidence 5899999988887654 58899988755 4599999999763
No 201
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=72.92 E-value=3.5 Score=32.98 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=31.4
Q ss_pred CCCCCeeeeecccCC-----CCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSM-----SYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~-----~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
.-.+|||.||-...- +-+..+-|=+.||+.||+.|+++|+.
T Consensus 216 eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 216 EVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred cccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 346899999988642 22346777889999999999998764
No 202
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=72.67 E-value=4.5 Score=36.64 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=33.0
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
.++..++||.+||...+ ...+..|+..|+.||..|...|..
T Consensus 440 ~~Ts~~gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRRG--QSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred ceECCCCEEEeeccCCC--cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567899999998764 246777999999999999887754
No 203
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=71.69 E-value=5.5 Score=34.27 Aligned_cols=38 Identities=37% Similarity=0.516 Sum_probs=27.8
Q ss_pred ceeeCcceeEEEEcCCc----eEEEEc----CCcEEEeCEEEEecC
Q 024393 17 DIRLGHRVTKITRHYIG----VKVTVE----GGKTFVADAVVVAVP 54 (268)
Q Consensus 17 ~i~~~~~V~~I~~~~~~----v~v~~~----~g~~~~ad~VI~a~p 54 (268)
.++++++|++|+..++. +.|.+. +++++.|+.||+++.
T Consensus 111 ~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 111 QVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp TEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE---
T ss_pred ceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC
Confidence 39999999999977643 777773 347899999999886
No 204
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=71.30 E-value=14 Score=34.36 Aligned_cols=43 Identities=28% Similarity=0.521 Sum_probs=30.7
Q ss_pred cCCCCCeeeeecccCC----CCC--c-cchhhHHHHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~----~~~--g-~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
.+|++|||-||..+.. .|. | .+-.|+.+|+.|++.+.+.+..+
T Consensus 526 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~ 575 (578)
T PRK12843 526 GQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTLAR 575 (578)
T ss_pred CCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhhcc
Confidence 4589999999966532 121 2 45668999999999997765544
No 205
>PTZ00058 glutathione reductase; Provisional
Probab=71.29 E-value=15 Score=33.99 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=34.2
Q ss_pred HHHHHhc-CCceeeCcceeEEEEcCC-ceEEEEcCC-cEEEeCEEEEecCh
Q 024393 8 VINTLAK-GLDIRLGHRVTKITRHYI-GVKVTVEGG-KTFVADAVVVAVPL 55 (268)
Q Consensus 8 l~~~l~~-~l~i~~~~~V~~I~~~~~-~v~v~~~~g-~~~~ad~VI~a~p~ 55 (268)
+.+.|.+ +++|++++.|.+|+.+++ ++.+...++ +++.+|.|++++..
T Consensus 284 l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 284 LENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCC
Confidence 3344433 678999999999987644 455554343 57999999999864
No 206
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=71.10 E-value=5.7 Score=34.25 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=30.6
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+++++.+ .|++|+.+++ .|.+.+|+++.+|++|+|+-...
T Consensus 68 gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 68 GARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred CCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence 4677765 7999988766 45566788899999999997543
No 207
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=71.04 E-value=10 Score=34.32 Aligned_cols=50 Identities=24% Similarity=0.119 Sum_probs=34.8
Q ss_pred HHHHHhc--CCceeeCcceeEEEEcCCceE-EEEcC-C--cEEEeCEEEEecChhh
Q 024393 8 VINTLAK--GLDIRLGHRVTKITRHYIGVK-VTVEG-G--KTFVADAVVVAVPLGV 57 (268)
Q Consensus 8 l~~~l~~--~l~i~~~~~V~~I~~~~~~v~-v~~~~-g--~~~~ad~VI~a~p~~~ 57 (268)
|.+.+.+ +++|+.++.|.+|..+++++. +...+ + ..+.++.||+|+-...
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4444433 578999999999987766644 43332 3 4678999999997643
No 208
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=70.91 E-value=9.8 Score=33.09 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=28.6
Q ss_pred ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 17 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 17 ~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
.|+++++|.++ +.+++.+ .+|++++||.||-|.+.+
T Consensus 102 ~i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 102 GVILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFK 137 (370)
T ss_pred cEEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCC
Confidence 38889999988 3444555 678899999999999865
No 209
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=70.61 E-value=13 Score=31.38 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=34.3
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
.++.++++|-|||-....+ .-+..|...|..||..+.+.+...
T Consensus 261 ~~TsvpGifAaGDv~~~~~-rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 261 METSVPGIFAAGDVADKNG-RQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred cccCCCCEEEeEeeccCcc-cEEeehhhhHHHHHHHHHHHhhhc
Confidence 5677899999999998742 258889999999999887766543
No 210
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=70.35 E-value=6 Score=32.51 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=30.7
Q ss_pred CCCCeeeeecccCC-----CCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 202 PVDNLFFAGEATSM-----SYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 202 p~~~l~~aG~~~~~-----~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
-.++||.+|-.... .-+..+-|=+.||++||+.|++.|+.
T Consensus 212 ~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 212 VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 36899999988642 22236667788999999999998864
No 211
>PRK08401 L-aspartate oxidase; Provisional
Probab=70.32 E-value=15 Score=33.00 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=33.6
Q ss_pred HHHHHHhc-----CCceeeCcceeEEEEcCCceE-EEEcCCcEEEeCEEEEecChhh
Q 024393 7 PVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 7 ~l~~~l~~-----~l~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
.+.+.|.+ +++++.+ .|..+..+++++. +.. +++.+.++.||+|+-...
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 35555543 4567765 7888877666655 444 667899999999996543
No 212
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=70.07 E-value=5.3 Score=37.67 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=34.1
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
..+..++||.+||.... +..+..|+..|+.||..|...|..+
T Consensus 462 ~~Ts~pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 462 LQTSVAGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred CcCCCCCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567899999999865 3467889999999999999888754
No 213
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=69.88 E-value=16 Score=33.79 Aligned_cols=42 Identities=21% Similarity=0.171 Sum_probs=29.9
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEc-CCc--EEEeC-EEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVE-GGK--TFVAD-AVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~-~g~--~~~ad-~VI~a~p~~ 56 (268)
+++|+++++|++|..++++|. |... +|+ ++.++ .||+|+.-.
T Consensus 222 gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~ 268 (557)
T PRK07843 222 GVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGF 268 (557)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCc
Confidence 568999999999998766654 4332 443 46786 599977543
No 214
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=69.58 E-value=16 Score=33.64 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=27.3
Q ss_pred cCCCCCeeeeecccC------CCC----CccchhhHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATS------MSY----PGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~------~~~----~g~~~gA~~Sg~~aa~~i~ 236 (268)
.+|+++||-||+... .++ +..+-.|+.+|+.|++.+.
T Consensus 501 g~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa 547 (549)
T PRK12834 501 GTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAA 547 (549)
T ss_pred CCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHh
Confidence 458999999999863 111 3356678999999998774
No 215
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=69.39 E-value=17 Score=33.69 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=31.5
Q ss_pred cCCCCCeeeeecccCC----CC---CccchhhHHHHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM----SY---PGSVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~----~~---~g~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
.+|+++||-||..+.. .| +.++-.|+.+|+.|++.+.+....+
T Consensus 521 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~ 570 (574)
T PRK12842 521 GTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGGR 570 (574)
T ss_pred CCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhccc
Confidence 4589999999976532 12 2257779999999999997765443
No 216
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=69.21 E-value=5.8 Score=34.88 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=37.2
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
++.++-|+.|+++.+..+.+.+...+|.++..|.||+|+--
T Consensus 407 GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 407 GVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred CceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecC
Confidence 56899999999999998999999999999999999999843
No 217
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=69.14 E-value=7.2 Score=35.12 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=30.6
Q ss_pred cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
.+..++||.+||...+ ...+..|+..|+.||..|...|
T Consensus 428 ~T~~~gVfa~GD~~~~--~~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRG--ADLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred cCCCCCEEEECCcCCC--ccHHHHHHHHHHHHHHHHHHHh
Confidence 4557899999999865 2356789999999999997654
No 218
>PRK07512 L-aspartate oxidase; Provisional
Probab=69.12 E-value=12 Score=34.27 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=30.7
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEc-CCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVE-GGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~-~g~--~~~ad~VI~a~p~~ 56 (268)
+++|+.++.|.+|..+++++. +... +++ ++.|+.||+|+--.
T Consensus 151 gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 151 SITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred CCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 578999999999887666543 3332 232 57899999999664
No 219
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=69.07 E-value=6.4 Score=39.10 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=34.7
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
.++..++||.+||...+ +..+-.|+..|+.||..|...|...
T Consensus 716 ~~Ts~pgVFAaGDv~~G--~~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVTG--GATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred cCCCCCCEEEecCcCCC--ccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35667899999999865 3578899999999999999887653
No 220
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=68.94 E-value=17 Score=31.77 Aligned_cols=41 Identities=34% Similarity=0.561 Sum_probs=31.4
Q ss_pred CCceeeCcceeEEEEcCC-ceEEEEcC---C--cEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYI-GVKVTVEG---G--KTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~-~v~v~~~~---g--~~~~ad~VI~a~p~ 55 (268)
+++++++++|.+++.+++ .+.|...+ + ++++||.+.+++--
T Consensus 266 gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC
Confidence 457999999999999887 56655433 3 57889998888743
No 221
>PRK10262 thioredoxin reductase; Provisional
Probab=68.93 E-value=5 Score=33.95 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=32.6
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
.++..++||-+||..... ...+-.|+..|..||..|...|.+
T Consensus 275 ~~t~~~~VyA~GD~~~~~-~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHI-YRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred cccCCCCEEECeeccCCC-cceEEEEehhHHHHHHHHHHHHHh
Confidence 456689999999998643 234566999999999999877754
No 222
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=68.82 E-value=5.6 Score=36.76 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=33.6
Q ss_pred cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
.+..+++|.+||.... +..+-.|+..|+.||..|...|...
T Consensus 406 ~ts~~~Vfa~GD~~~g--~~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 406 MTGRPGVFAGGDMVPG--PRTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred cCCCCCEEeccCcCCC--chHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3457899999999864 3578899999999999998887643
No 223
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=68.71 E-value=17 Score=34.18 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=31.5
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEc---CCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVE---GGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~---~g~--~~~ad~VI~a~p~~ 56 (268)
+++|++++.|.++..++++|. |... +|+ .+.|+.||+|+--.
T Consensus 184 gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 184 TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 578999999999987776644 4332 453 57899999998653
No 224
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.91 E-value=17 Score=33.13 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=34.4
Q ss_pred HHHHHh--cCCceeeCcceeEEEEcCCceE-EEEcC---C--cEEEeCEEEEecCh
Q 024393 8 VINTLA--KGLDIRLGHRVTKITRHYIGVK-VTVEG---G--KTFVADAVVVAVPL 55 (268)
Q Consensus 8 l~~~l~--~~l~i~~~~~V~~I~~~~~~v~-v~~~~---g--~~~~ad~VI~a~p~ 55 (268)
+.+.|. .+++|++++.|.+|..+++++. |.+.+ | +++.+|.||+++..
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 445554 3689999999999987666543 54432 2 46899999998864
No 225
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=67.29 E-value=19 Score=33.48 Aligned_cols=42 Identities=24% Similarity=0.179 Sum_probs=31.4
Q ss_pred CCceeeCcceeEEEEcCCceE-E---EEcCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-V---TVEGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v---~~~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|+.++.|.++..+++++. + ...+|+ .+.|+.||+|+-..
T Consensus 149 gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 149 GVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred CCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 468999999999987776643 2 234553 57899999999664
No 226
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=66.94 E-value=20 Score=33.16 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=30.2
Q ss_pred CCceeeCcceeEEEEcCCceE-EEE-cCCc--EEEeC-EEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTV-EGGK--TFVAD-AVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~-~~g~--~~~ad-~VI~a~p~~ 56 (268)
+++|+++++|++|..++++|. |.. .+|+ ++.++ .||+|+--.
T Consensus 222 gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~ 268 (557)
T PRK12844 222 GVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGF 268 (557)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCc
Confidence 568999999999998777644 433 2453 46785 699988554
No 227
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=66.90 E-value=9.9 Score=37.04 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=32.2
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
++++++++.|.+|+.+.. .|.+.+|+++.+|++|+|+-..
T Consensus 73 gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 73 GIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred CCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCC
Confidence 568999999999987643 4556678889999999999754
No 228
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=66.81 E-value=5.9 Score=35.12 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=32.8
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
+.+.++|||-+||.... .+++..|..+|..+|+.|+.+.
T Consensus 445 ~~t~i~gLy~aGdGAG~--argI~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 445 LSTSIKGLYPAGDGAGL--ARGIVSAAADGIKAAEGIARKY 483 (486)
T ss_pred ceeeecceEEccccccc--cchhHHHhhhhHHHHHHHHHHh
Confidence 45567899999999865 5789999999999999997653
No 229
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=66.28 E-value=21 Score=32.55 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCceeeCcceeEEEEcCCceE-EEE-cCCc--EEEeC-EEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTV-EGGK--TFVAD-AVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~-~~g~--~~~ad-~VI~a~p~~ 56 (268)
+++|+++++|+++..++++|. |.. .+|+ ++.|+ .||+|+.-.
T Consensus 188 gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 188 NARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred CCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence 578999999999988776654 332 3443 56786 799998654
No 230
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=66.09 E-value=6.8 Score=32.11 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCCCeeeeecccCC-----CCCccchhhHHHHHHHHHHHHHHH
Q 024393 202 PVDNLFFAGEATSM-----SYPGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 202 p~~~l~~aG~~~~~-----~~~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
-.++||.+|-.... .-+..+-+=+.||++||+.|++.|
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 36999999988642 222366677889999999999876
No 231
>PRK10262 thioredoxin reductase; Provisional
Probab=65.52 E-value=17 Score=30.75 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=29.2
Q ss_pred CCceeeCcceeEEEEcCCce-EEEEcC----C--cEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGV-KVTVEG----G--KTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v-~v~~~~----g--~~~~ad~VI~a~p~ 55 (268)
++++++++.|.+|..+++++ .|++.+ + +++.+|.||+++..
T Consensus 199 gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 199 NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred CeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 46799999999998765443 244322 1 46899999998864
No 232
>PRK13984 putative oxidoreductase; Provisional
Probab=65.27 E-value=7.6 Score=36.22 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=31.2
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
.++..++||.+||..... .+-.|+..|+.||..|...|.
T Consensus 564 ~~Ts~~gVfAaGD~~~~~---~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 564 GQTSIPWLFAGGDIVHGP---DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CccCCCCEEEecCcCCch---HHHHHHHHHHHHHHHHHHHhc
Confidence 345678999999998752 456799999999999987764
No 233
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=65.09 E-value=22 Score=33.23 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=32.7
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~ 56 (268)
.+++ +...|.+|..+++++. |.+.+|..+.|+.||.|+-..
T Consensus 115 nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 115 NLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 3555 4667888888877755 888889999999999999864
No 234
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=64.95 E-value=23 Score=32.72 Aligned_cols=42 Identities=24% Similarity=0.147 Sum_probs=31.9
Q ss_pred CCceeeCcceeEEEEcCCceE-EEE---cCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTV---EGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~---~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|++++.|++|..+++++. |.. .+|+ .+.|+.||+|+-..
T Consensus 143 gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 143 GVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred CCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 578999999999988777644 322 3564 57899999999754
No 235
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=64.84 E-value=25 Score=31.00 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=46.9
Q ss_pred CCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHh----cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHH-H
Q 024393 165 SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL----RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR-V 239 (268)
Q Consensus 165 ~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~----~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~-l 239 (268)
.|+-++.+.-. ....|+|+.+.|..+..+...+ .-|.++++|+||+..|+ .|.+-....++.-|+.++.. .
T Consensus 42 ~pvLiEAT~NQ--Vnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn--~Wq~lpa~eAM~~A~~li~ayV 117 (426)
T PRK15458 42 SPLLIEATSNQ--VDQFGGYTGMTPADFRGFVCQLADSLNFPQEALILGGDHLGPN--RWQNLPAAQAMANADDLIKSYV 117 (426)
T ss_pred CcEEEEecccc--ccccCCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHHH
Confidence 45555544211 2223778777775554433222 22446899999999985 47777777888888776654 4
Q ss_pred HHHhCC
Q 024393 240 LERYGE 245 (268)
Q Consensus 240 ~~~~~~ 245 (268)
+..|.+
T Consensus 118 ~AGF~k 123 (426)
T PRK15458 118 AAGFKK 123 (426)
T ss_pred HcCCce
Confidence 445554
No 236
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=64.83 E-value=20 Score=33.26 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=34.3
Q ss_pred HHHHHhc--CCceeeCcceeEEEEcCCceE-EE---EcCCc--EEEeCEEEEecChh
Q 024393 8 VINTLAK--GLDIRLGHRVTKITRHYIGVK-VT---VEGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 8 l~~~l~~--~l~i~~~~~V~~I~~~~~~v~-v~---~~~g~--~~~ad~VI~a~p~~ 56 (268)
|.+++.+ +++|+.++.|.++..+++++. +. ..+|+ .+.|+.||+|+--.
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 4444433 578999999999987776643 22 23554 57899999999664
No 237
>PLN02546 glutathione reductase
Probab=64.81 E-value=25 Score=32.59 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=31.0
Q ss_pred CCceeeCcceeEEEEcC-CceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHY-IGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~-~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++|++++.|.+|...+ +.+.+.+.+++...+|.||+++...
T Consensus 307 GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 307 GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccc
Confidence 67899999999998654 3455666555445589999998654
No 238
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=64.41 E-value=26 Score=30.79 Aligned_cols=77 Identities=9% Similarity=0.130 Sum_probs=45.7
Q ss_pred CCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHh----cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHH-H
Q 024393 165 SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL----RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR-V 239 (268)
Q Consensus 165 ~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~----~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~-l 239 (268)
.|+-++.+.-. ....|+|+.+.|..+..+...+ .-|.++++|+||+..|+ .|.......++.-|+.++.. .
T Consensus 39 ~pvLiEAT~NQ--Vdq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn--~Wq~~pa~eAM~~A~~li~ayV 114 (421)
T PRK15052 39 RKVLIEATSNQ--VNQFGGYTGMTPADFREFVYGIADKVGFPRERIILGGDHLGPN--CWQQEPADAAMEKSVELVKAYV 114 (421)
T ss_pred CcEEEEecccc--ccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHHH
Confidence 45555544211 2223778777665554433222 22445899999999984 46777777777777766554 4
Q ss_pred HHHhCC
Q 024393 240 LERYGE 245 (268)
Q Consensus 240 ~~~~~~ 245 (268)
+..|.+
T Consensus 115 ~AGF~k 120 (421)
T PRK15052 115 RAGFSK 120 (421)
T ss_pred HcCCce
Confidence 455554
No 239
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=64.15 E-value=13 Score=34.14 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEcC-Cc---EEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVEG-GK---TFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~~-g~---~~~ad~VI~a~p~ 55 (268)
.++|++++.|.+|..+++++. |.+.+ ++ ...++.||+++-.
T Consensus 208 nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 208 NLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGA 253 (532)
T ss_pred CeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCC
Confidence 478999999999999876643 55432 22 3578999998865
No 240
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=64.04 E-value=24 Score=28.94 Aligned_cols=42 Identities=29% Similarity=0.176 Sum_probs=29.9
Q ss_pred CCceeeCcceeEEEEcCC-ceE-EEEc-----------CCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYI-GVK-VTVE-----------GGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~-~v~-v~~~-----------~g~~~~ad~VI~a~p~~ 56 (268)
+++|++++.|+.+..+++ ++. +... +..++.|+.||.|+-..
T Consensus 118 Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 118 GAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred CCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 568999999999987655 433 3221 12478999999998644
No 241
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=63.94 E-value=26 Score=32.66 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=29.3
Q ss_pred cCCCCCeeeeecccCC----CCC--c-cchhhHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~----~~~--g-~~~gA~~Sg~~aa~~i~~~l 239 (268)
.+|+++||-||+.... .|. | .+-.|+.+|+.|++.+.+..
T Consensus 524 g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~ 570 (584)
T PRK12835 524 DSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVV 570 (584)
T ss_pred CCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhh
Confidence 4589999999977532 122 2 36778999999999987653
No 242
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.08 E-value=18 Score=32.39 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=33.1
Q ss_pred ceeeCcceeEEEEcC-CceEEEEcCC----cEEEeCEEEEecChh
Q 024393 17 DIRLGHRVTKITRHY-IGVKVTVEGG----KTFVADAVVVAVPLG 56 (268)
Q Consensus 17 ~i~~~~~V~~I~~~~-~~v~v~~~~g----~~~~ad~VI~a~p~~ 56 (268)
.|++++.|..+...+ ++|.|.+.++ +..-+|.||+|+--+
T Consensus 108 ~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 108 MINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred heEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 499999999999888 7999888654 366799999988655
No 243
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=62.87 E-value=22 Score=31.91 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=30.7
Q ss_pred hcCCceeeCcceeEEEEcCCc-e-EEEEcCCcEEEeCEEEEecChhh
Q 024393 13 AKGLDIRLGHRVTKITRHYIG-V-KVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 13 ~~~l~i~~~~~V~~I~~~~~~-v-~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
..+++++.+ .|+++..++++ + .|++.+|++++||.||=|.-...
T Consensus 166 ~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 166 ERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred cCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 346788777 47788877655 3 48888999999999999998754
No 244
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=62.19 E-value=22 Score=33.36 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=30.4
Q ss_pred CceeeCcceeEEEEcCCceE-EE---EcCCc--EEEeCEEEEecCh
Q 024393 16 LDIRLGHRVTKITRHYIGVK-VT---VEGGK--TFVADAVVVAVPL 55 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~~~v~-v~---~~~g~--~~~ad~VI~a~p~ 55 (268)
++|+.++.|.++..+++++. +. ..+|+ .+.|+.||+|+-.
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 78999999999987766543 22 23553 5789999999975
No 245
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=62.18 E-value=31 Score=30.34 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=45.5
Q ss_pred CCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHh----cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHH-H
Q 024393 165 SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL----RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR-V 239 (268)
Q Consensus 165 ~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~----~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~-l 239 (268)
.|+-++.+.-. ....|+|+.+.|..+..+...+ .-|.++++|+||+..|+ .|.+-....++.-|+.++.. .
T Consensus 38 ~pvLiEAT~NQ--Vnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn--~Wq~lpa~eAM~~A~~li~ayV 113 (420)
T TIGR02810 38 TPVLIEATSNQ--VNQFGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPN--PWQHLPADEAMAKAAALVDAYV 113 (420)
T ss_pred CcEEEEecccc--ccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHHH
Confidence 45555544211 2223778777665554433222 22445899999999985 46676667777777666554 4
Q ss_pred HHHhCC
Q 024393 240 LERYGE 245 (268)
Q Consensus 240 ~~~~~~ 245 (268)
+..|.+
T Consensus 114 ~AGF~k 119 (420)
T TIGR02810 114 EAGFTK 119 (420)
T ss_pred HcCCce
Confidence 555554
No 246
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=61.93 E-value=10 Score=37.49 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=31.9
Q ss_pred cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
.+..++||.+||...+ ...+--|+..|+.||..|...|.
T Consensus 589 ~Ts~pgVFAaGD~~~G--~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 589 RTSIKGVYSGGDAARG--GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred ccCCCCEEEEEcCCCC--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999875 34788999999999999987544
No 247
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=61.92 E-value=26 Score=32.48 Aligned_cols=43 Identities=16% Similarity=-0.045 Sum_probs=31.9
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEc---CC--cEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVE---GG--KTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~---~g--~~~~ad~VI~a~p~~~ 57 (268)
+++|+.++.++++..++++|. |... +| ..+.|+.||+|+--..
T Consensus 150 gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 150 NVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred CCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 468999999999998777654 4332 34 3578999999996543
No 248
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=61.82 E-value=25 Score=32.72 Aligned_cols=42 Identities=24% Similarity=0.109 Sum_probs=31.4
Q ss_pred CCceeeCcceeEEEEcCCceE-E---EEcCC--cEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-V---TVEGG--KTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v---~~~~g--~~~~ad~VI~a~p~~ 56 (268)
+++++.++.|.++..+++++. + ...+| ..+.|+.||+|+--.
T Consensus 148 ~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 195 (582)
T PRK09231 148 QIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA 195 (582)
T ss_pred CcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCC
Confidence 467999999999998777644 2 23456 367899999999653
No 249
>PLN02852 ferredoxin-NADP+ reductase
Probab=61.50 E-value=12 Score=34.05 Aligned_cols=40 Identities=8% Similarity=0.028 Sum_probs=34.6
Q ss_pred CCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
++++++|-+||...+. .|-+-.++..|..+|+.|++++..
T Consensus 384 T~ipGvyAaGDi~~Gp-~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 384 DTEPGLYVVGWLKRGP-TGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred cCCCCEEEeeeEecCC-CCeeeecHhhHHHHHHHHHHHHHc
Confidence 5678999999998764 468999999999999999998776
No 250
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=61.00 E-value=29 Score=32.85 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=31.3
Q ss_pred cCCceeeCcceeEEEEcCCc--eEEEEcC-------C--------cEEEeCEEEEecChh
Q 024393 14 KGLDIRLGHRVTKITRHYIG--VKVTVEG-------G--------KTFVADAVVVAVPLG 56 (268)
Q Consensus 14 ~~l~i~~~~~V~~I~~~~~~--v~v~~~~-------g--------~~~~ad~VI~a~p~~ 56 (268)
++++|++++.|.+|+..++. +.+.+.+ + +++.+|.||+++-..
T Consensus 367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 46899999999999876543 5554321 1 268999999998644
No 251
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=61.00 E-value=9.5 Score=33.42 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=27.1
Q ss_pred HhcCC-CCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHH
Q 024393 198 RLRIP-VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 198 ~~~~p-~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
.+.+. ++||||||+-... .| .+.|..+|..|+..+...+.
T Consensus 349 ~l~~k~~~~lf~AGqi~G~--~G-y~eaaa~G~~ag~na~~~~~ 389 (392)
T PF01134_consen 349 TLETKKIPGLFFAGQINGT--EG-YEEAAAQGLIAGINAARRLQ 389 (392)
T ss_dssp TSBBSSSBTEEE-GGGGTB---S-HHHHHHHHHHHHHHHHHHHT
T ss_pred ceEECCCCCceECCCCcch--hH-HHHHHHHHHHHHHHHHHHHc
Confidence 34444 7899999999876 24 45556689988887765543
No 252
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=60.93 E-value=26 Score=31.57 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=31.7
Q ss_pred HhcCCceeeCcceeEEEEcCCceE-EEE-----cC-------C--cEEEeCEEEEecCh
Q 024393 12 LAKGLDIRLGHRVTKITRHYIGVK-VTV-----EG-------G--KTFVADAVVVAVPL 55 (268)
Q Consensus 12 l~~~l~i~~~~~V~~I~~~~~~v~-v~~-----~~-------g--~~~~ad~VI~a~p~ 55 (268)
..+++++++++.+.+|..+++++. |.. .+ | +++.+|.||+++..
T Consensus 340 ~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 340 HEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 356789999999999986566643 332 12 2 46889999999863
No 253
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=60.76 E-value=1.4e+02 Score=27.54 Aligned_cols=49 Identities=31% Similarity=0.188 Sum_probs=35.1
Q ss_pred HHHHhcCCceeeCcceeEEEEcCCceEEEEc---CCc--EEEeCEEEEecChhh
Q 024393 9 INTLAKGLDIRLGHRVTKITRHYIGVKVTVE---GGK--TFVADAVVVAVPLGV 57 (268)
Q Consensus 9 ~~~l~~~l~i~~~~~V~~I~~~~~~v~v~~~---~g~--~~~ad~VI~a~p~~~ 57 (268)
.++-..+.+|+..++|+++..+++-+.|... +|+ ++.|+.||.|+-+..
T Consensus 172 ~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 172 RDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred HHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 3444456689999999999999983334433 343 467999999997764
No 254
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=60.60 E-value=10 Score=34.65 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=34.1
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
+++..++||.|||.....+ ..+..|+..|..||..+.+.|.+.
T Consensus 472 l~Ts~p~IyAaGDv~~~~~-k~~~~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 472 GATSVPGVFAAGDCTTVPY-KQIIIAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred CCCCCCCEEECccccCCCC-CEEEEhhhhHHHHHHHHHHHHhhc
Confidence 4456789999999987532 357889999999999998877654
No 255
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=60.52 E-value=31 Score=30.17 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=27.8
Q ss_pred CCCeeeeecccCCC---CCccchhhHHHHHHHHHHHHH
Q 024393 203 VDNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 203 ~~~l~~aG~~~~~~---~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
.+++.|+||..|.. .+-+++.|++.|...|+.|..
T Consensus 278 ~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~ 315 (390)
T TIGR02360 278 YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLE 315 (390)
T ss_pred cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHH
Confidence 37999999997742 234899999999999988754
No 256
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=59.54 E-value=13 Score=32.88 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=31.7
Q ss_pred CCCCeeeeecccCCC---CCccchhhHHHHHHHHHHHHHHHHHH
Q 024393 202 PVDNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 202 p~~~l~~aG~~~~~~---~~g~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
..+|+|-+||..... .+....-|...|..+|+.|...+..+
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 478999999998631 23456678999999999998887543
No 257
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.13 E-value=29 Score=30.52 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=32.1
Q ss_pred ceeeCcceeEEEEcCCc-eEEEEcC---C--cEEEeCEEEEecChhh
Q 024393 17 DIRLGHRVTKITRHYIG-VKVTVEG---G--KTFVADAVVVAVPLGV 57 (268)
Q Consensus 17 ~i~~~~~V~~I~~~~~~-v~v~~~~---g--~~~~ad~VI~a~p~~~ 57 (268)
.++.++.|.+++..+++ +.+.+.. | ++++.|.||+|+--+.
T Consensus 294 ~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~ 340 (436)
T COG3486 294 RLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRR 340 (436)
T ss_pred eeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEeccccc
Confidence 58899999999998866 6665432 2 6788999999998763
No 258
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=59.04 E-value=35 Score=31.95 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=29.7
Q ss_pred CCceeeCcceeEEEEcC-CceE-EEEc---CC--cEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHY-IGVK-VTVE---GG--KTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~-~~v~-v~~~---~g--~~~~ad~VI~a~p~ 55 (268)
+++|++++.|.++..++ ++|. |... +| ..+.|+.||+|+--
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 47899999999998754 3433 4332 45 35789999999955
No 259
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=58.89 E-value=14 Score=34.08 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=30.7
Q ss_pred cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
++..++||.+||..... ...+..|+..|..||..|...|.+
T Consensus 270 ~Ts~p~IyAaGDv~~~~-~~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 270 ETNVPGVYAAGDLRPKE-LRQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred ccCCCCEEEceeccCCC-cchheeHHhhHHHHHHHHHHHHHh
Confidence 34578999999986432 235678999999999998765544
No 260
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=58.66 E-value=41 Score=27.54 Aligned_cols=42 Identities=26% Similarity=0.198 Sum_probs=30.7
Q ss_pred CCceeeCcceeEEEEcCC--ceE-EEEc-----------CCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYI--GVK-VTVE-----------GGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~--~v~-v~~~-----------~g~~~~ad~VI~a~p~~ 56 (268)
+++|+.++.|+.+..+++ ++. |.+. +..++.|+.||.|+...
T Consensus 114 GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 114 GAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred CCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 568999999999998766 333 4332 12478899999999754
No 261
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=58.32 E-value=34 Score=31.75 Aligned_cols=42 Identities=21% Similarity=0.052 Sum_probs=31.2
Q ss_pred CCceeeCcceeEEEEcCCceE-EEE---cCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTV---EGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~---~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|..++.|.++..+++++. +.. .+|+ .+.|+.||+|+--.
T Consensus 133 gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 133 DTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred CCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 468999999999988776644 332 3563 57899999999654
No 262
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=58.07 E-value=35 Score=31.97 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=31.9
Q ss_pred HhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 198 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 198 ~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
..++.++|||-|||....+..+...+++..|+.+++.+.+.++.
T Consensus 390 ~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 390 NRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 34677999999999875422345667888888888888766544
No 263
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=58.02 E-value=14 Score=32.27 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=29.0
Q ss_pred cCCCCCeeeeecccCC-CCCc--cchhhHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM-SYPG--SVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~-~~~g--~~~gA~~Sg~~aa~~i~~~ 238 (268)
.+.+++|||||+-+-- +..| .+.-|..||..|++.+..-
T Consensus 333 Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~ 374 (376)
T TIGR03862 333 LKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSW 374 (376)
T ss_pred cccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3457999999998642 2233 5778999999999888653
No 264
>PRK13984 putative oxidoreductase; Provisional
Probab=57.85 E-value=39 Score=31.58 Aligned_cols=50 Identities=26% Similarity=0.238 Sum_probs=33.6
Q ss_pred HHHHHHhcCCceeeCcceeEEEEcCCceE-EEEc--------CC-----------cEEEeCEEEEecChh
Q 024393 7 PVINTLAKGLDIRLGHRVTKITRHYIGVK-VTVE--------GG-----------KTFVADAVVVAVPLG 56 (268)
Q Consensus 7 ~l~~~l~~~l~i~~~~~V~~I~~~~~~v~-v~~~--------~g-----------~~~~ad~VI~a~p~~ 56 (268)
.+.+++.++++|++++.+.+|..+++++. |... +| +++.+|.||+++...
T Consensus 468 e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~ 537 (604)
T PRK13984 468 EIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA 537 (604)
T ss_pred HHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence 44555677889999998888876555533 2221 12 368899999988643
No 265
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=57.84 E-value=12 Score=37.18 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=30.0
Q ss_pred cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
.+..++||.+||.... ++.+..|+..|+.||..|+.
T Consensus 802 ~Ts~pgVFAaGD~a~G--P~tVv~AIaqGr~AA~nIl~ 837 (1012)
T TIGR03315 802 ETNITNVFVIGDANRG--PATIVEAIADGRKAANAILS 837 (1012)
T ss_pred ccCCCCEEEEeCcCCC--ccHHHHHHHHHHHHHHHHhc
Confidence 3456899999998754 35788999999999999975
No 266
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=57.17 E-value=15 Score=32.82 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=29.5
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++..++||.+||.+.. ....+-|...|+.+|+.|+
T Consensus 291 ~~T~~p~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGK--VELTPVAIAAGRKLSERLF 326 (450)
T ss_pred CcCCCCCEEEEEecCCC--cccHHHHHHHHHHHHHHHh
Confidence 45567899999999865 3478889999999999886
No 267
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=56.98 E-value=29 Score=32.03 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=29.7
Q ss_pred CceeeCcceeEEEEcCC---ceE-E--EEc-CCc--EEEeCEEEEecChhh
Q 024393 16 LDIRLGHRVTKITRHYI---GVK-V--TVE-GGK--TFVADAVVVAVPLGV 57 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~~---~v~-v--~~~-~g~--~~~ad~VI~a~p~~~ 57 (268)
++|++++.|.+|..+++ ++. | .+. +|+ ++.||.||+|+-.=.
T Consensus 229 ~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIe 279 (544)
T TIGR02462 229 FTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVH 279 (544)
T ss_pred EEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchh
Confidence 68999999999997642 333 3 332 353 578999999986433
No 268
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=56.52 E-value=37 Score=32.16 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=31.3
Q ss_pred CCceeeCcceeEEEEcCCce---EEEE-cCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGV---KVTV-EGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v---~v~~-~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|+.++.|.+|..+++++ .+.. .+|+ .+.|+.||+|+-..
T Consensus 172 gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~ 219 (657)
T PRK08626 172 GVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGY 219 (657)
T ss_pred CCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc
Confidence 57899999999999877763 3332 3564 46799999999654
No 269
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=56.41 E-value=14 Score=36.71 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=31.1
Q ss_pred cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
++..++||.+||.... ++.+..|+..|+.||..|+..+
T Consensus 804 qTs~pgVFAaGD~a~G--p~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 804 ETSLTNVYMIGDVQRG--PSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred ccCCCCEEEEeccccC--chHHHHHHHHHHHHHHHHhhhc
Confidence 4557899999998754 3578899999999999997643
No 270
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=56.11 E-value=37 Score=29.37 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=34.0
Q ss_pred CCceeeCcceeEEEEcCCceE---EEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK---VTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~---v~~~~g~~~~ad~VI~a~p~~ 56 (268)
+++++++..+.+|+..++... +...+++.+.+|.++++++..
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 357999999999998877643 566778889999999988753
No 271
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.06 E-value=42 Score=31.21 Aligned_cols=41 Identities=22% Similarity=0.109 Sum_probs=29.9
Q ss_pred cCCCCCeeeeecccCCC-CC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~-~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
.+++++||-||+....+ ++ .++-.|+..|+.|++.+.+..+
T Consensus 372 ~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 419 (583)
T PRK08205 372 TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAR 419 (583)
T ss_pred CCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 36799999999976421 22 1567789999999998876543
No 272
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=55.98 E-value=16 Score=32.12 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=33.0
Q ss_pred CCCeeeeecccCCCC----CccchhhHHHHHHHHHHHHHHHHH
Q 024393 203 VDNLFFAGEATSMSY----PGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 203 ~~~l~~aG~~~~~~~----~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
.+++|.+||.....+ ++..+.|...|..+|+.|...+..
T Consensus 291 ~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 291 HPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999976533 578999999999999999887766
No 273
>PRK06116 glutathione reductase; Validated
Probab=55.60 E-value=16 Score=32.55 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=29.5
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
+++..++||.+||.+.. ......|...|+.||+.|..
T Consensus 291 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 291 QNTNVPGIYAVGDVTGR--VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCcCCCCEEEEeecCCC--cCcHHHHHHHHHHHHHHHhC
Confidence 35567899999998754 34678899999999999853
No 274
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=55.37 E-value=41 Score=31.78 Aligned_cols=49 Identities=29% Similarity=0.395 Sum_probs=34.6
Q ss_pred HHHHHHhcCCceeeCcceeEEEEcCCceEEE---Ec---------------CCc--EEEeCEEEEecCh
Q 024393 7 PVINTLAKGLDIRLGHRVTKITRHYIGVKVT---VE---------------GGK--TFVADAVVVAVPL 55 (268)
Q Consensus 7 ~l~~~l~~~l~i~~~~~V~~I~~~~~~v~v~---~~---------------~g~--~~~ad~VI~a~p~ 55 (268)
.+.+++.++++|++++.+.+|..+++++.+. .. +|+ ++.+|.||+++..
T Consensus 367 ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~ 435 (652)
T PRK12814 367 EIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQ 435 (652)
T ss_pred HHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCC
Confidence 4556677889999999999998766653322 11 232 5789999998874
No 275
>PRK08275 putative oxidoreductase; Provisional
Probab=55.02 E-value=40 Score=31.14 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=31.2
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
.++.+++||-||+....+ ..++..|+..|..|++.+.+.++
T Consensus 365 ~~t~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~~~ 405 (554)
T PRK08275 365 AETTVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEYVA 405 (554)
T ss_pred CccCCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999976532 23677899999999998876543
No 276
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.24 E-value=44 Score=31.24 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=30.9
Q ss_pred CCceeeCcceeEEEEcC-CceE-EE---EcCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHY-IGVK-VT---VEGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~-~~v~-v~---~~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|.+++.|.++..++ ++|. |. ..+|+ .+.|+.||+|+--.
T Consensus 163 gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 163 NAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred CCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 46899999999998765 5544 33 23553 67899999999654
No 277
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.21 E-value=36 Score=31.34 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=30.9
Q ss_pred CCceeeCcceeEEEEcCCc-eE-EE--E-cCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIG-VK-VT--V-EGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~-v~-v~--~-~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|++++.|+++..++++ +. +. . .+|+ .+.|+.||+|+--.
T Consensus 148 gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 148 RIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred CCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 4689999999999876654 43 32 2 4553 57899999999654
No 278
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=53.72 E-value=18 Score=33.57 Aligned_cols=50 Identities=28% Similarity=0.256 Sum_probs=33.7
Q ss_pred HHHHHHhc-----CCceeeCcceeEEEEcCCceE-EEEc--CCc-EEEeC-EEEEecChh
Q 024393 7 PVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVE--GGK-TFVAD-AVVVAVPLG 56 (268)
Q Consensus 7 ~l~~~l~~-----~l~i~~~~~V~~I~~~~~~v~-v~~~--~g~-~~~ad-~VI~a~p~~ 56 (268)
.|.+.|.+ +++|+++++|+++..+++++. |... +++ .+.++ .||+|+-..
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~ 274 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGF 274 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCc
Confidence 35555533 568999999999998877644 4443 332 46776 699988543
No 279
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=53.51 E-value=37 Score=29.92 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=41.2
Q ss_pred CCCcEEEEcccCCCcCCCcccCcCCCCCChHHHHHhc----CCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHH
Q 024393 164 SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLR----IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 164 ~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~----~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
..|+-++.+.- .....|+|+.+.|..+..+...+. -|.++++|+||+..|+ .|-.-....|+.-|+.++...
T Consensus 41 ~~pvLiEAT~N--QVnq~GGYTGmtP~dF~~~V~~iA~~~g~~~~~iiLGGDHLGP~--~w~~lpaeeAM~~A~~li~ay 116 (424)
T PF08013_consen 41 DSPVLIEATSN--QVNQFGGYTGMTPADFRDFVREIADEVGFPRDRIILGGDHLGPN--PWQHLPAEEAMAKAKELIRAY 116 (424)
T ss_dssp -S-EEEEEETT--TCSTT-TTTTB-HHHHHHHHHHHHHHCT--GGGEEEEEEEESSC--CCTTSBHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccc--cccccCCcCCCCHHHHHHHHHHHHHHcCCchhhEEecCCCCCcc--cccCCCHHHHHHHHHHHHHHH
Confidence 45666665421 123347787666644433322222 2446799999999994 467777778888887776653
No 280
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=53.37 E-value=44 Score=31.10 Aligned_cols=42 Identities=26% Similarity=0.098 Sum_probs=31.2
Q ss_pred CCceeeCcceeEEEEcCCceE-E---EEcCC--cEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-V---TVEGG--KTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v---~~~~g--~~~~ad~VI~a~p~~ 56 (268)
++++..++.|.++..+++++. + ...+| ..+.|+.||+|+--.
T Consensus 147 ~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (580)
T TIGR01176 147 QIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGA 194 (580)
T ss_pred CCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence 467899999999998777654 2 22456 467899999999654
No 281
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=53.35 E-value=28 Score=31.16 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=32.6
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
.+++++++.|++++...+. +.+.+|+++.++++|+|+--
T Consensus 141 gIe~~~~t~v~~~D~~~K~--l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASKT--LVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred CceEEEcceeEEeeccccE--EEeCCCceeecceEEEeecC
Confidence 3579999999999987664 55678999999999999876
No 282
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=53.30 E-value=56 Score=29.25 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=30.5
Q ss_pred hcCCceeeCcceeEEEEcCCc---eEEEE-----------------cCCcEEEeCEEEEecCh
Q 024393 13 AKGLDIRLGHRVTKITRHYIG---VKVTV-----------------EGGKTFVADAVVVAVPL 55 (268)
Q Consensus 13 ~~~l~i~~~~~V~~I~~~~~~---v~v~~-----------------~~g~~~~ad~VI~a~p~ 55 (268)
.++++|++++.|.+|..++++ +.+.. .+++++.+|.||+++..
T Consensus 323 ~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 323 EEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred HCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 447899999999999876654 33321 12347899999998864
No 283
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=52.83 E-value=17 Score=32.27 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=26.6
Q ss_pred CCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHH
Q 024393 202 PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 202 p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
..+||||||+-+.. - +.+-|..+|..|+..+...+.
T Consensus 329 ~~~~l~~AGqi~g~--~-Gy~ea~a~G~~Ag~n~~~~~~ 364 (436)
T PRK05335 329 KRPNLFFAGQITGV--E-GYVESAASGLLAGINAARLAL 364 (436)
T ss_pred CCCCEEeeeeecCc--h-HHHHHHHHHHHHHHHHHHHhc
Confidence 36899999999965 2 344677788888877765544
No 284
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=52.78 E-value=19 Score=32.18 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=30.4
Q ss_pred HhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 198 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 198 ~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
.+++..+++|.+||.+.. ......|...|+.+|+.|..
T Consensus 288 ~~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 288 YSRTSIPSIYAVGDVTDR--INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CCccCCCCEEEeeccCCC--ccchhHHHHHHHHHHHHHhc
Confidence 345567899999999865 34677899999999998863
No 285
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=52.65 E-value=7.1 Score=33.14 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=26.4
Q ss_pred cceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 22 HRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 22 ~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
..|.+.+.+++ +|.+.+|+++++|+.|+|+-++.
T Consensus 112 ekv~~f~P~~N--~v~t~gg~eIsYdylviA~Giql 145 (446)
T KOG3851|consen 112 EKVKEFNPDKN--TVVTRGGEEISYDYLVIAMGIQL 145 (446)
T ss_pred HHHHhcCCCcC--eEEccCCcEEeeeeEeeeeecee
Confidence 66666666555 45667899999999999998864
No 286
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=52.31 E-value=20 Score=33.48 Aligned_cols=41 Identities=24% Similarity=0.142 Sum_probs=30.3
Q ss_pred cCCCCCeeeeecccCCC-CC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~-~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
.+++++||-||+....+ ++ .++-.|+..|+.|++.+.+.+.
T Consensus 382 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 429 (598)
T PRK09078 382 DAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIK 429 (598)
T ss_pred CCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhh
Confidence 36799999999976421 22 2577899999999998876543
No 287
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=51.41 E-value=39 Score=31.36 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=28.0
Q ss_pred CCCeeeeecccCCC-CC-ccchhhHHHHHHHHHHHHH
Q 024393 203 VDNLFFAGEATSMS-YP-GSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 203 ~~~l~~aG~~~~~~-~~-g~~~gA~~Sg~~aa~~i~~ 237 (268)
..||.|.|..+-.. .. -++|-++++|+.|+-.++.
T Consensus 486 ~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~ 522 (576)
T PRK13977 486 STNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLG 522 (576)
T ss_pred cceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhC
Confidence 46999999998653 22 4799999999999988764
No 288
>PRK14727 putative mercuric reductase; Provisional
Probab=51.21 E-value=18 Score=32.65 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=30.4
Q ss_pred HhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 198 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 198 ~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
.+++..++||-+||.+.. +....-|...|..||..|..
T Consensus 308 ~~~Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 308 AMETSAPDIYAAGDCSDL--PQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred CeecCCCCEEEeeecCCc--chhhhHHHHHHHHHHHHHcC
Confidence 345667899999999864 35678899999999999863
No 289
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=50.92 E-value=20 Score=33.23 Aligned_cols=40 Identities=23% Similarity=0.124 Sum_probs=29.5
Q ss_pred CCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
+++++||-||+.... .++ .++-.|+.+|+.|++.+.+..+
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 689999999997642 122 1566788999999998876543
No 290
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.87 E-value=39 Score=29.25 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=33.2
Q ss_pred CCceeeCcceeEEEEcCCc-eEEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
++++|.++.++++...+++ ..+.+.+|....+|.+++|+--
T Consensus 244 ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR 285 (478)
T KOG0405|consen 244 GINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGR 285 (478)
T ss_pred ceeecccccceeeeecCCCceEEEEeccccccccEEEEEecC
Confidence 5689999999999988776 5566777766669999999853
No 291
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=50.85 E-value=48 Score=33.81 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=32.0
Q ss_pred cCCCCCeeeeecccCCC----C--CccchhhHHHHHHHHHHHHHHHHHHh
Q 024393 200 RIPVDNLFFAGEATSMS----Y--PGSVHGAFSTGLMAAEDCRMRVLERY 243 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~----~--~g~~~gA~~Sg~~aa~~i~~~l~~~~ 243 (268)
.+|+++||-||+.+..- + +.++-.|+.+|+.|++.+.+.+.++.
T Consensus 857 ~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~ 906 (1167)
T PTZ00306 857 RRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKK 906 (1167)
T ss_pred CceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 35899999999974321 1 22455689999999999988766643
No 292
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=50.37 E-value=24 Score=29.82 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=34.3
Q ss_pred HHHHHHhcCC-----ceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 7 PVINTLAKGL-----DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 7 ~l~~~l~~~l-----~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
.|.++|.+.. ++.. ..|.+++..++...|.+.+|+ ++|++||+|+-...
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcc
Confidence 4555555433 3433 667777766656778888886 99999999998754
No 293
>PRK07804 L-aspartate oxidase; Provisional
Probab=50.18 E-value=48 Score=30.55 Aligned_cols=42 Identities=31% Similarity=0.167 Sum_probs=29.7
Q ss_pred CCceeeCcceeEEEEcC-CceE-EEE-------cCC-cEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHY-IGVK-VTV-------EGG-KTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~-~~v~-v~~-------~~g-~~~~ad~VI~a~p~~ 56 (268)
+++|+.++.|.++..++ +++. +.. .++ ..+.|+.||+|+-..
T Consensus 158 gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 158 PLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred CCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 46899999999998765 3433 322 223 467899999999654
No 294
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=49.74 E-value=23 Score=32.17 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=29.9
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++..+++|.+||.+.. ....+-|...|..+|+.|+
T Consensus 314 l~Ts~~~IyA~GDv~~~--~~l~~~A~~qG~~aa~ni~ 349 (486)
T TIGR01423 314 SRTNVPNIYAIGDVTDR--VMLTPVAINEGAAFVDTVF 349 (486)
T ss_pred CcCCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHh
Confidence 45567899999999865 3578889999999999986
No 295
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=49.60 E-value=23 Score=31.76 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=30.1
Q ss_pred CCCCCeeeeecccCC-----CC--CccchhhHHHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSM-----SY--PGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~-----~~--~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
+|+++||-||+.... ++ +.++-.|+.+|+.|++.+.+..++
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~ 463 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQH 463 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhhh
Confidence 589999999986422 11 235777899999999999776443
No 296
>PRK02106 choline dehydrogenase; Validated
Probab=49.49 E-value=34 Score=31.64 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=29.8
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEcC--C--cEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVEG--G--KTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~~--g--~~~~ad~VI~a~p~ 55 (268)
.++|++++.|.+|..+++++. |.+.+ + ..+.++.||+++-.
T Consensus 215 nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGa 260 (560)
T PRK02106 215 NLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGA 260 (560)
T ss_pred CcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCC
Confidence 478999999999998866533 55432 2 23578999998854
No 297
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=49.40 E-value=61 Score=30.46 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=30.0
Q ss_pred CCceeeCcceeEEEE-cCCceE-EEE---cCCc--EEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITR-HYIGVK-VTV---EGGK--TFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~-~~~~v~-v~~---~~g~--~~~ad~VI~a~p~ 55 (268)
+++|+.++.|.++.. +++++. |.. .+|+ .+.|+.||+|+--
T Consensus 180 gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 180 DCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred CCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 568999999999887 556544 332 3553 5679999999944
No 298
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=49.14 E-value=43 Score=30.05 Aligned_cols=43 Identities=33% Similarity=0.448 Sum_probs=35.9
Q ss_pred CCceeeCcceeEEEEcC-CceE-EEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHY-IGVK-VTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~-~~v~-v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
++++.+++.+.+++-+. +++. |.+.+|+++.||-||+.+-..-
T Consensus 269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 56899999999999665 4544 9999999999999999887654
No 299
>PRK13748 putative mercuric reductase; Provisional
Probab=49.10 E-value=21 Score=32.94 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=29.7
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++..+|+|.+||.+.. ...+..|...|..||..|.
T Consensus 391 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 391 MRTSVPHIYAAGDCTDQ--PQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred cccCCCCEEEeeecCCC--ccchhHHHHHHHHHHHHHc
Confidence 45667899999999865 3577889999999999985
No 300
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=48.91 E-value=66 Score=29.89 Aligned_cols=50 Identities=20% Similarity=0.192 Sum_probs=34.4
Q ss_pred HHHHHHhc-----CCceeeCcceeEEEEc-CCceE-EEE---cCCc--EEEeCEEEEecChh
Q 024393 7 PVINTLAK-----GLDIRLGHRVTKITRH-YIGVK-VTV---EGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 7 ~l~~~l~~-----~l~i~~~~~V~~I~~~-~~~v~-v~~---~~g~--~~~ad~VI~a~p~~ 56 (268)
.|.+.|.+ +++|..++.+.++..+ +++|. +.. .+|+ .+.|+.||+|+--.
T Consensus 127 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 188 (570)
T PRK05675 127 ALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGA 188 (570)
T ss_pred HHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCc
Confidence 45555543 4689999999999875 55543 332 4563 56799999999654
No 301
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=48.38 E-value=71 Score=29.99 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=30.1
Q ss_pred CceeeCcceeEEEEc-CCc-eEEEEcCCcEEEeCEEEEecChhh
Q 024393 16 LDIRLGHRVTKITRH-YIG-VKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 16 l~i~~~~~V~~I~~~-~~~-v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+.++ ...|.++..+ +++ +.|.+.+|..+.||.||+|+-...
T Consensus 112 V~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 112 LSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred cEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 3455 4467777665 455 458888888999999999997763
No 302
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=48.22 E-value=5.9 Score=35.17 Aligned_cols=44 Identities=34% Similarity=0.436 Sum_probs=0.0
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEcC--C-cEEEeCEEEEecChhhh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVEG--G-KTFVADAVVVAVPLGVL 58 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~~--g-~~~~ad~VI~a~p~~~l 58 (268)
+++|++++.|.++..+++++. |+..+ | .++.||.||=|+.-..+
T Consensus 104 gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l 151 (428)
T PF12831_consen 104 GVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDL 151 (428)
T ss_dssp ------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999999999987643 44433 4 67899999998864433
No 303
>PRK07395 L-aspartate oxidase; Provisional
Probab=47.60 E-value=43 Score=30.99 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=30.1
Q ss_pred CCceeeCcceeEEEEcC--CceE-EEE-cCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHY--IGVK-VTV-EGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~--~~v~-v~~-~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|++++.|.++..++ +++. +.. .+|+ .+.|+.||+|+--.
T Consensus 149 gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 149 NIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred CcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 57899999999998763 4433 322 3553 47899999999763
No 304
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=47.03 E-value=26 Score=32.58 Aligned_cols=42 Identities=29% Similarity=0.193 Sum_probs=29.8
Q ss_pred CCceeeCcceeEEEEcCCceE-EEEc-CCc--EEEe-CEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTVE-GGK--TFVA-DAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~~-~g~--~~~a-d~VI~a~p~~ 56 (268)
+++|+++++|.++..+++++. |... +|+ ++.+ +.||+|+-..
T Consensus 235 Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~ 281 (578)
T PRK12843 235 GVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGF 281 (578)
T ss_pred CCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCc
Confidence 468999999999987767654 4443 343 4665 6899988554
No 305
>PRK14694 putative mercuric reductase; Provisional
Probab=46.90 E-value=24 Score=31.73 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=29.7
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++..+++|-+||.... +..+.-|...|..||..|.
T Consensus 298 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 298 LQTTVSGIYAAGDCTDQ--PQFVYVAAAGGSRAAINMT 333 (468)
T ss_pred cccCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHhc
Confidence 45567899999999865 3578889999999999885
No 306
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=46.88 E-value=27 Score=32.86 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=29.4
Q ss_pred CCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l 239 (268)
+++++||-||+.... .++ .++-.|+..|+.|++.+.+.+
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~ 466 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIA 466 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 679999999997532 122 257778999999999887654
No 307
>PLN02507 glutathione reductase
Probab=46.68 E-value=25 Score=31.96 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=30.3
Q ss_pred HhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 198 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 198 ~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
.+++..+|||-+||.+.. ....+.|...|+.+|+.|..
T Consensus 325 ~~~Ts~p~IyAiGDv~~~--~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNR--INLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CCcCCCCCEEEeeEcCCC--CccHHHHHHHHHHHHHHHcC
Confidence 345668899999999865 23678899999999998853
No 308
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=45.95 E-value=26 Score=31.50 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=29.5
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++..+++|.+||.... ......|...|..||+.|.
T Consensus 299 ~~Ts~p~IyAiGD~~~~--~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 299 MRTNVPHIYAIGDVTAK--LQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred cccCCCCEEEEeecCCC--cccHhHHHHHHHHHHHHHc
Confidence 45567899999999864 3477889999999999985
No 309
>PTZ00367 squalene epoxidase; Provisional
Probab=45.85 E-value=2.6e+02 Score=26.13 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=27.2
Q ss_pred CCCeeeeecccCCC---CCccchhhHHHHHHHHHHHH
Q 024393 203 VDNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 203 ~~~l~~aG~~~~~~---~~g~~~gA~~Sg~~aa~~i~ 236 (268)
.+++.+.||..|+. .++|++-|++.+...++.|.
T Consensus 336 ~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~ 372 (567)
T PTZ00367 336 IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLT 372 (567)
T ss_pred CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHH
Confidence 46899999998753 34689999999988887774
No 310
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=45.66 E-value=26 Score=31.36 Aligned_cols=36 Identities=17% Similarity=0.403 Sum_probs=28.9
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++..+++|.+||.... +.....|...|..||+.|.
T Consensus 298 ~~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 298 YQTAVPHIYAVGDVIGF--PSLASASMDQGRIAAQHAV 333 (461)
T ss_pred cccCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHHc
Confidence 44567899999998753 3467789999999999986
No 311
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=45.18 E-value=32 Score=32.00 Aligned_cols=42 Identities=24% Similarity=0.162 Sum_probs=30.5
Q ss_pred CCceeeCcceeEEEEcC----CceE-EEE---cCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHY----IGVK-VTV---EGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~----~~v~-v~~---~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|..++.|.+|..++ +++. +.. .+|+ .+.|+.||+|+--.
T Consensus 154 gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 154 GVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred CCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 46899999999998765 5543 332 3554 57899999999654
No 312
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=45.02 E-value=27 Score=30.96 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=28.0
Q ss_pred cCCCCCeeeeecccC----C-CC--CccchhhHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATS----M-SY--PGSVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~----~-~~--~g~~~gA~~Sg~~aa~~i~~~ 238 (268)
.+|+++||-||..+. . .+ +.++-.|+.+|+.|++.+.+.
T Consensus 384 g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 384 AVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 458999999998542 1 11 235677899999999988643
No 313
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=45.02 E-value=34 Score=32.55 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=35.5
Q ss_pred HHhcCCCCCeeeeecccCCC--CCccchhhHHHHHHHHHHHHHHHHHHhC
Q 024393 197 ERLRIPVDNLFFAGEATSMS--YPGSVHGAFSTGLMAAEDCRMRVLERYG 244 (268)
Q Consensus 197 ~~~~~p~~~l~~aG~~~~~~--~~g~~~gA~~Sg~~aa~~i~~~l~~~~~ 244 (268)
..+++..+++|.+|+..... ..|-+.-++++|+.+|++++....++|.
T Consensus 263 d~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~ 312 (793)
T COG1251 263 DYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYE 312 (793)
T ss_pred ccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcccccc
Confidence 35567788999999986532 3467788899999999999876554444
No 314
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=44.98 E-value=23 Score=31.00 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=28.3
Q ss_pred cCCCCCeeeeecccCC-CCCc--cchhhHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM-SYPG--SVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~-~~~g--~~~gA~~Sg~~aa~~i~~~ 238 (268)
.+..++|||||+-+.- +|.| .+.-|..||..|++.+.+.
T Consensus 365 sk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~ 406 (408)
T COG2081 365 SKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAW 406 (408)
T ss_pred hhcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhh
Confidence 3457899999987643 2333 4667999999999888653
No 315
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=44.83 E-value=28 Score=31.17 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=29.6
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
+++..+++|.+||.+.. .....-|...|..||..|..
T Consensus 294 ~~ts~~~IyA~GD~~~~--~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 294 TQTSVPGIYAAGDVNGK--PPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cccCCCCEEEEEecCCC--ccchhHHHHHHHHHHHHhcC
Confidence 45567899999999865 23567899999999999864
No 316
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=44.63 E-value=25 Score=29.66 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=27.9
Q ss_pred CCeeeeecccCC---CCCccchhhHHHHHHHHHHHHHHH
Q 024393 204 DNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 204 ~~l~~aG~~~~~---~~~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
+++.++||..+. ..+.+++-|++.|...++.|...+
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~ 329 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAAL 329 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHh
Confidence 589999999764 334589999999999998887654
No 317
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=44.56 E-value=27 Score=32.68 Aligned_cols=41 Identities=27% Similarity=0.474 Sum_probs=28.8
Q ss_pred HHhcCC-CCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHH
Q 024393 197 ERLRIP-VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 197 ~~~~~p-~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
+.+.+. ++||||||+.... . +.+.|..+|..|+-.....+.
T Consensus 350 ~~le~k~~~gLf~AGqi~Gt--~-Gy~eAaa~Gl~Ag~naa~~~~ 391 (617)
T TIGR00136 350 PTLETKLIQGLFFAGQINGT--T-GYEEAAAQGLMAGINAALKLQ 391 (617)
T ss_pred hhheeCCCCCeEEccccCCc--c-hHHHHHHHHHHHHHHHHHHhc
Confidence 344444 7899999996654 3 467888899988877655444
No 318
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.47 E-value=34 Score=31.68 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=30.4
Q ss_pred cCC-CCCeeeeecccCCC-CC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 200 RIP-VDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 200 ~~p-~~~l~~aG~~~~~~-~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
+++ ++|||-||+....+ ++ .++-+|+..|+.|++.+.+.++
T Consensus 356 ~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 356 RNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred CcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 366 99999999975421 22 2577899999999999876554
No 319
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=44.24 E-value=23 Score=32.69 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=29.2
Q ss_pred cCCCCCeeeeecccCC----CC---CccchhhHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM----SY---PGSVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~----~~---~g~~~gA~~Sg~~aa~~i~~~ 238 (268)
.+|+++||-||..+.. .| +.++-.|+.+|+.|++.+.+.
T Consensus 504 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 504 GSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred CCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 4589999999986532 12 236778999999999998654
No 320
>PRK06370 mercuric reductase; Validated
Probab=43.92 E-value=31 Score=30.89 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=29.9
Q ss_pred HhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 198 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 198 ~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
.+++..+++|-+||.+.. ......|...|..||+.|+.
T Consensus 296 ~l~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 296 QLRTTNPGIYAAGDCNGR--GAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCcCCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhC
Confidence 345667899999999865 23567889999999999864
No 321
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.91 E-value=35 Score=31.81 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=30.1
Q ss_pred hcCCCCCeeeeecccCCCCC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
..+++++||-||+.....++ .++-.|+..|+.|++.+.+.++
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999997532122 2466788899999988876543
No 322
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=43.81 E-value=28 Score=31.73 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=29.3
Q ss_pred cCCCCCeeeeecccCCCC------CccchhhHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSY------PGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~------~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
.+|+++||-||+.+..-+ +..+-.|+.+|+.|++.+....
T Consensus 458 g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 458 GSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred CCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 468999999999753211 2356678999999999887653
No 323
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=43.27 E-value=25 Score=33.33 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=35.1
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
++++++++..++|..++.-..+.+++|..+.||-||+++-+.
T Consensus 201 Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 201 GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred cceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccc
Confidence 458999999999988555566999999999999999998553
No 324
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=43.14 E-value=27 Score=31.51 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=29.4
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
+++..+++|.+||.+.. +.....|...|..||+.|..
T Consensus 300 ~~t~~p~VyAiGDv~~~--~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 300 CRTNVPHIFAIGDIVGQ--PMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred cccCCCCEEEehhhcCC--cccHHHHHHHHHHHHHHHcC
Confidence 45667899999998754 24678899999999998863
No 325
>PRK12839 hypothetical protein; Provisional
Probab=43.02 E-value=80 Score=29.38 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=28.1
Q ss_pred cCCCCCeeeeecccCC----CC---CccchhhHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM----SY---PGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~----~~---~g~~~gA~~Sg~~aa~~i~~ 237 (268)
.+|+++||-||..+.. .| +.++-.|+.+|+.|++.+.+
T Consensus 522 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 522 DTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred CCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHh
Confidence 4589999999986422 12 23577899999999998853
No 326
>PRK07121 hypothetical protein; Validated
Probab=42.87 E-value=33 Score=31.07 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=28.3
Q ss_pred cCCCCCeeeeecccCC----CC--CccchhhHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM----SY--PGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~----~~--~g~~~gA~~Sg~~aa~~i~~ 237 (268)
.+|+++||-||..... .+ +.++-.|+.+|+.|++.+.+
T Consensus 446 g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~ 489 (492)
T PRK07121 446 GAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAA 489 (492)
T ss_pred CCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHh
Confidence 4589999999986432 11 34677799999999998854
No 327
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=42.81 E-value=36 Score=31.70 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=29.9
Q ss_pred CCceeeCcceeEEEEc-CCceE-EEE-cCCc--EEEeC-EEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRH-YIGVK-VTV-EGGK--TFVAD-AVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~-~~~v~-v~~-~~g~--~~~ad-~VI~a~p~~~ 57 (268)
+++|+++++|++|..+ +++|. |.. .+|+ ++.++ .||+|+--..
T Consensus 227 gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 227 GVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred CceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 4689999999999986 45544 433 2343 46787 5999986543
No 328
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.76 E-value=40 Score=31.06 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=30.0
Q ss_pred cCCCCCeeeeecccCCCC------CccchhhHHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSY------PGSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~------~g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
++++++||-||+.+...+ +.++-.|+.+|+.|++.+...+.
T Consensus 358 ~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~ 404 (543)
T PRK06263 358 ETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAE 404 (543)
T ss_pred cccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 478999999999753211 12456799999999999876543
No 329
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=42.60 E-value=18 Score=33.18 Aligned_cols=37 Identities=24% Similarity=0.174 Sum_probs=28.5
Q ss_pred CcceeEEEEcCCc--eEEEEcCCcEEEeCEEEEecChhh
Q 024393 21 GHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 21 ~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
...|+.+..++++ +.|++.+|.++.|+.||+|+--..
T Consensus 120 q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 120 QGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred HhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence 3456667776664 558999999999999999997653
No 330
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=42.55 E-value=29 Score=31.05 Aligned_cols=37 Identities=32% Similarity=0.418 Sum_probs=29.7
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
+++..+++|-+||.... ......|...|..+|+.|..
T Consensus 297 ~~t~~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 297 LRTNVPNIYAIGDIVGG--PMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CccCCCCEEEeeecCCC--cchHHHHHHHHHHHHHHHcC
Confidence 45567899999999864 34678899999999999863
No 331
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=42.47 E-value=92 Score=27.86 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=29.9
Q ss_pred hcCCceeeCcceeEEEEcC-CceE-EEEc---------CC-----------cEEEeCEEEEecCh
Q 024393 13 AKGLDIRLGHRVTKITRHY-IGVK-VTVE---------GG-----------KTFVADAVVVAVPL 55 (268)
Q Consensus 13 ~~~l~i~~~~~V~~I~~~~-~~v~-v~~~---------~g-----------~~~~ad~VI~a~p~ 55 (268)
.++++|++++.+.+|..++ +++. |++. +| +++.+|.||+++-.
T Consensus 321 ~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 321 EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred hCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 4578999999999997643 4442 3322 22 26889999998864
No 332
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=42.29 E-value=37 Score=31.43 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=30.3
Q ss_pred CCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
+++++||-||+.... .++ .++-.|+.+|+.|++.+.+.+.
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 789999999997542 121 2567789999999999876654
No 333
>PRK12831 putative oxidoreductase; Provisional
Probab=42.16 E-value=1.1e+02 Score=27.47 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=31.2
Q ss_pred HHHhcCCceeeCcceeEEEEcC-CceE-EEEc------------------CC--cEEEeCEEEEecCh
Q 024393 10 NTLAKGLDIRLGHRVTKITRHY-IGVK-VTVE------------------GG--KTFVADAVVVAVPL 55 (268)
Q Consensus 10 ~~l~~~l~i~~~~~V~~I~~~~-~~v~-v~~~------------------~g--~~~~ad~VI~a~p~ 55 (268)
++..++++|++++.+.+|..++ +++. |.+. +| .++.+|.||+++..
T Consensus 327 ~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~ 394 (464)
T PRK12831 327 HAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394 (464)
T ss_pred HHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCC
Confidence 4456688999999999997643 4432 2221 22 25889999998864
No 334
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=42.01 E-value=31 Score=30.82 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=29.1
Q ss_pred cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
++..+++|.+||.... ......|...|..+|+.|..
T Consensus 296 ~t~~~~IyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 296 RTNVPGIYAIGDVIGG--PMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred ccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 4556899999999864 34677899999999999864
No 335
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=40.86 E-value=34 Score=30.63 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=30.0
Q ss_pred HhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 198 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 198 ~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
.+++..+++|-+||.... .....-|...|..||..|..
T Consensus 291 ~~~Ts~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 291 TLRTSNPGIYAAGDVTGG--LQLEYVAAKEGVVAAENALG 328 (463)
T ss_pred CccCCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHhcC
Confidence 345667899999999875 23567899999999999863
No 336
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=40.73 E-value=33 Score=32.20 Aligned_cols=40 Identities=25% Similarity=0.134 Sum_probs=29.4
Q ss_pred cCCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l 239 (268)
.+++++||-||+.... .++ .++-.|+..|+.|++.+.+..
T Consensus 399 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 399 DKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred CCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 3579999999997532 122 267778999999999887653
No 337
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=40.65 E-value=36 Score=30.70 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=29.0
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
+++..+++|.+||.+.. +.....|...|..||+.|..
T Consensus 310 ~~Ts~~~VyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 310 CRTNVPNVYAIGDVVRG--PMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CccCCCCEEEEEeccCC--cchHHHHHHHHHHHHHHHcC
Confidence 34567899999999864 23677899999999998853
No 338
>PLN02661 Putative thiazole synthesis
Probab=40.62 E-value=97 Score=26.90 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=33.0
Q ss_pred HHHHHHhc--CCceeeCcceeEEEEcCCceE-EEE------cCC--------cEEEeCEEEEecC
Q 024393 7 PVINTLAK--GLDIRLGHRVTKITRHYIGVK-VTV------EGG--------KTFVADAVVVAVP 54 (268)
Q Consensus 7 ~l~~~l~~--~l~i~~~~~V~~I~~~~~~v~-v~~------~~g--------~~~~ad~VI~a~p 54 (268)
.|.++..+ +++|+.++.|..+..+++++. +.. .++ ..+.|+.||+|+-
T Consensus 177 tLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 177 TIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 45554432 578999999999998877633 331 121 2679999999996
No 339
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.47 E-value=41 Score=31.38 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=34.0
Q ss_pred HHHHHHhc-----CCceeeCcceeEEEEc-CCceE-EE---EcCCc--EEEeCEEEEecChh
Q 024393 7 PVINTLAK-----GLDIRLGHRVTKITRH-YIGVK-VT---VEGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 7 ~l~~~l~~-----~l~i~~~~~V~~I~~~-~~~v~-v~---~~~g~--~~~ad~VI~a~p~~ 56 (268)
.|...|.+ +++|++++.|+++..+ ++++. +. ..+|+ .+.|+.||+|+--.
T Consensus 144 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 144 ALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 35555543 4579999999999875 55543 33 23553 56799999998654
No 340
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.40 E-value=34 Score=31.78 Aligned_cols=40 Identities=28% Similarity=0.236 Sum_probs=29.1
Q ss_pred CCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
+|++|||-||+.... .++ .++-.|+.+|+.|++.+.+.++
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~ 415 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYAL 415 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 569999999997542 121 2467789999999998876543
No 341
>PRK07846 mycothione reductase; Reviewed
Probab=40.27 E-value=38 Score=30.36 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=28.4
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++..+++|.+||.+.+. ....-|...|+.+|+.|.
T Consensus 288 ~~Ts~p~IyA~GD~~~~~--~l~~~A~~~g~~~a~ni~ 323 (451)
T PRK07846 288 QRTSAEGVFALGDVSSPY--QLKHVANHEARVVQHNLL 323 (451)
T ss_pred cccCCCCEEEEeecCCCc--cChhHHHHHHHHHHHHHc
Confidence 456678999999998752 356678888988888885
No 342
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=40.21 E-value=28 Score=32.40 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=28.4
Q ss_pred cCCCCCeeeeecccCC----CC---CccchhhHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM----SY---PGSVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~----~~---~g~~~gA~~Sg~~aa~~i~~~ 238 (268)
.+|+++||-||..+.. .| +.++-.|+.+|+.|++.+.+.
T Consensus 525 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 570 (581)
T PRK06134 525 GQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGA 570 (581)
T ss_pred CCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhc
Confidence 4589999999975421 12 225777999999999998653
No 343
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=40.07 E-value=36 Score=30.49 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=29.0
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
+++..+++|.+||...+ ....+-|...|..+|+.|..
T Consensus 291 ~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 291 GRTSARGVWALGDVSSP--YQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred cccCCCCEEEeecccCc--ccChhHHHHHHHHHHHHhcC
Confidence 45667899999999875 23566788899999998863
No 344
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=39.49 E-value=1.1e+02 Score=28.67 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=29.3
Q ss_pred CCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
+++++||-||+.... .++ .++-.|+..|+.|++.+.+.+.
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 424 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLA 424 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999997542 112 2457789999999998876543
No 345
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=39.35 E-value=40 Score=30.11 Aligned_cols=41 Identities=27% Similarity=0.385 Sum_probs=26.4
Q ss_pred HHHhcCC-CCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHH
Q 024393 196 YERLRIP-VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 196 ~~~~~~p-~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
.+.+... .+||||||+-.... |+.|. ..+|..|+-.....+
T Consensus 321 ~~~l~~k~~~~lf~AGQi~G~~--GY~Ea-aa~Gl~agina~~~~ 362 (433)
T TIGR00137 321 TASLHFKDRQTLFFAGQLTGVE--GYVAS-TAGGWLAGINAARLA 362 (433)
T ss_pred hHHhccCCCCCEEECcccccch--HHHHH-HHHHHHHHHHHHHHH
Confidence 3445443 68999999998773 45554 456776665554443
No 346
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=39.01 E-value=44 Score=30.26 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=29.1
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
+++..+++|.+||.+... .....-|...|+.+|+.|..
T Consensus 306 ~~Ts~p~IyA~GDv~~~~-~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 306 EQTNVPYIYAVGDILEDK-QELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cccCCCCEEEEEEecCCC-ccchHHHHHHHHHHHHHHhc
Confidence 455678999999987532 23567799999999999863
No 347
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=38.81 E-value=39 Score=30.39 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=29.5
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
+++..+|+|.+||.+.. ......|...|..|+..++.
T Consensus 300 ~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 300 SRTSVPGIYAAGDCTGV--LPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred cccCCCCEEEEeeccCC--ccchhHHHHHHHHHHHHHcC
Confidence 45567899999999865 24678899999999988863
No 348
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=38.76 E-value=37 Score=30.56 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=29.5
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
+++..++||-+||.+.. +....-|...|+.+|+.|..
T Consensus 301 ~~Ts~~~IyA~GD~~~~--~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 301 HRTSVPGVWVIGDVTSG--PMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred eecCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 45667899999999864 24677899999999998863
No 349
>PLN02546 glutathione reductase
Probab=38.64 E-value=37 Score=31.41 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=29.8
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
+++..++||-+||.+.. ....+-|...|..+|+.|+.
T Consensus 376 l~Ts~p~IYAaGDv~~~--~~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 376 SRTSVPSIWAVGDVTDR--INLTPVALMEGGALAKTLFG 412 (558)
T ss_pred ceeCCCCEEEeeccCCC--cccHHHHHHHHHHHHHHHcC
Confidence 45567899999999865 34678899999999998863
No 350
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=38.49 E-value=49 Score=30.73 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=29.0
Q ss_pred CCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
+++++||-||+.... .++ .++-.|+..|+.|++.+...+.
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 406 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALK 406 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHHh
Confidence 479999999997532 112 2457789999999998876543
No 351
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=38.46 E-value=39 Score=31.47 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=29.9
Q ss_pred cCCCCCeeeeecccCCC-CC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~-~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
++++++||-||+....+ ++ .++-.|+..|+.|++.+.+.++
T Consensus 368 ~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 368 ETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred ccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 47899999999975321 11 2566788999999998876554
No 352
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=38.36 E-value=36 Score=31.37 Aligned_cols=42 Identities=29% Similarity=0.209 Sum_probs=30.3
Q ss_pred CCceeeCcceeEEEEcCCceE-EEE---cC--------------C-cEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVK-VTV---EG--------------G-KTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~-v~~---~~--------------g-~~~~ad~VI~a~p~~ 56 (268)
+++|+++++++++..++++|. |.. .+ + .++.|+.||+|+--.
T Consensus 166 gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf 226 (549)
T PRK12834 166 LVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGI 226 (549)
T ss_pred CceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCc
Confidence 379999999999988777654 442 11 1 357899999998543
No 353
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=37.94 E-value=30 Score=30.58 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=23.9
Q ss_pred cCCCCCeeeeecccCC-CCCc--cchhhHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM-SYPG--SVHGAFSTGLMAAE 233 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~-~~~g--~~~gA~~Sg~~aa~ 233 (268)
.+.++||||||+-+-- +..| .+.-|..||+.|++
T Consensus 372 Sk~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 372 SKLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp BSSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 3457999999998753 1223 57789999999885
No 354
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=37.87 E-value=1.4e+02 Score=26.83 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=31.4
Q ss_pred HHHHHhcCCceeeCcceeEEEEcC-CceE-EEE---c------C---------C--cEEEeCEEEEecCh
Q 024393 8 VINTLAKGLDIRLGHRVTKITRHY-IGVK-VTV---E------G---------G--KTFVADAVVVAVPL 55 (268)
Q Consensus 8 l~~~l~~~l~i~~~~~V~~I~~~~-~~v~-v~~---~------~---------g--~~~~ad~VI~a~p~ 55 (268)
+.++..+++++++++.+.+|..++ +++. |++ . + | .++.+|.||+++..
T Consensus 327 ~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~ 396 (467)
T TIGR01318 327 VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF 396 (467)
T ss_pred HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC
Confidence 333446678999999999997643 3332 222 1 1 2 36889999998864
No 355
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=37.56 E-value=1.4e+02 Score=27.62 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=32.8
Q ss_pred HHHHHHhcCCceeeCcceeEEEEcCCc-eEE-----EE----c-------CC--cEEEeCEEEEecCh
Q 024393 7 PVINTLAKGLDIRLGHRVTKITRHYIG-VKV-----TV----E-------GG--KTFVADAVVVAVPL 55 (268)
Q Consensus 7 ~l~~~l~~~l~i~~~~~V~~I~~~~~~-v~v-----~~----~-------~g--~~~~ad~VI~a~p~ 55 (268)
.+.++..++++|++++.+.+|..++++ +.+ .. . .| .++.+|.||+++..
T Consensus 311 ~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 311 EIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQ 378 (564)
T ss_pred HHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCC
Confidence 344555667899999999999866543 211 11 1 22 36889999998874
No 356
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=37.40 E-value=1e+02 Score=29.12 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=30.3
Q ss_pred CCceeeCcceeEEEEc-CCceE-EEE---cCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRH-YIGVK-VTV---EGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~-~~~v~-v~~---~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|+.++.+.++..+ ++++. +.. .+|+ .+.|+.||+|+--.
T Consensus 201 gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 201 NTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred CCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 5789999999998776 45543 332 3453 57899999999654
No 357
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=37.38 E-value=48 Score=29.83 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=30.0
Q ss_pred cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
++..+|+|-+||.+... ..-+-|...|+.||+.|+.
T Consensus 299 ~Tnvp~IyA~GDV~~~~--~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 299 TTNVPGIYAIGDVIGGP--MLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ccCCCCEEEeeccCCCc--ccHhHHHHHHHHHHHHHhC
Confidence 34478999999998763 3788899999999999975
No 358
>PRK12839 hypothetical protein; Provisional
Probab=37.36 E-value=41 Score=31.25 Aligned_cols=42 Identities=29% Similarity=0.288 Sum_probs=28.3
Q ss_pred CCceeeCcceeEEEEc-CCceE-EE--EcCCc-EE-EeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRH-YIGVK-VT--VEGGK-TF-VADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~-~~~v~-v~--~~~g~-~~-~ad~VI~a~p~~ 56 (268)
+++|+++++|++|..+ ++++. |. ..+|+ ++ .++.||+|+-..
T Consensus 228 Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf 275 (572)
T PRK12839 228 GVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGF 275 (572)
T ss_pred CCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCc
Confidence 5689999999999865 45543 43 34453 23 358999998543
No 359
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=36.78 E-value=52 Score=30.56 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=30.1
Q ss_pred cCCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
.+++++||-||+.... .++ .++-.|+.+|+.|++.+...++
T Consensus 367 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 414 (575)
T PRK05945 367 DGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYVQ 414 (575)
T ss_pred CCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 4579999999997642 121 2567789999999999876543
No 360
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=36.69 E-value=1.2e+02 Score=28.17 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=29.9
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 56 (268)
++++ +++.|.+|..+++.+.+.+.+| .+.+|+||+|+-..
T Consensus 74 gv~~-~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 74 GVKF-LQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGAS 113 (555)
T ss_pred CCEE-eccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCc
Confidence 3456 4778999988766667777666 68999999998653
No 361
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=36.04 E-value=57 Score=28.50 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=30.7
Q ss_pred CCceeeCcceeEEEE-cCCceEEEEc-CCc--EEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITR-HYIGVKVTVE-GGK--TFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~-~~~~v~v~~~-~g~--~~~ad~VI~a~p~~~ 57 (268)
++++++++.++++.. +++.+.|+.. +|+ ++++|.||-|--.+.
T Consensus 117 g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 117 GLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred CCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch
Confidence 457999999888865 4455666664 674 688998887776554
No 362
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=35.99 E-value=48 Score=31.21 Aligned_cols=40 Identities=25% Similarity=0.149 Sum_probs=29.3
Q ss_pred CCCCCeeeeecccCCCCC------ccchhhHHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSMSYP------GSVHGAFSTGLMAAEDCRMRVL 240 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~~~~------g~~~gA~~Sg~~aa~~i~~~l~ 240 (268)
+++++||-||+....-++ .++-.|+..|+.|++.+.+.++
T Consensus 403 t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~ 448 (626)
T PRK07803 403 ATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVR 448 (626)
T ss_pred eecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 679999999996432111 2567789999999998876543
No 363
>PRK06175 L-aspartate oxidase; Provisional
Probab=35.91 E-value=46 Score=29.67 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=29.3
Q ss_pred cCCCCCeeeeecccC-CCC------CccchhhHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATS-MSY------PGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~-~~~------~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
+++++|||-||+... .-+ +.++-.|+..|++|++.+...+
T Consensus 341 ~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 341 KTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred cccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999753 111 1346678999999999986543
No 364
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=35.90 E-value=99 Score=30.97 Aligned_cols=48 Identities=23% Similarity=0.220 Sum_probs=32.0
Q ss_pred HHHHHh-cCCceeeCcceeEEEEcCCc--eEEEE--cCCcEEEeCEEEEecCh
Q 024393 8 VINTLA-KGLDIRLGHRVTKITRHYIG--VKVTV--EGGKTFVADAVVVAVPL 55 (268)
Q Consensus 8 l~~~l~-~~l~i~~~~~V~~I~~~~~~--v~v~~--~~g~~~~ad~VI~a~p~ 55 (268)
+.+.|. .+++|++++.|.+|.-++.. +.+.. .+++++.+|.|+++...
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGW 409 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCc
Confidence 344443 36789999999999755432 33332 24567899999998743
No 365
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=35.69 E-value=43 Score=31.01 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=28.2
Q ss_pred cCCCCCeeeeecccCC----CCCc---cchhhHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM----SYPG---SVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~----~~~g---~~~gA~~Sg~~aa~~i~~ 237 (268)
.+|+++||-||..+.. .|.+ .+-.|+.+|+.|++.+..
T Consensus 511 g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 511 GSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 4589999999998632 2222 466789999999998754
No 366
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=35.45 E-value=51 Score=32.94 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=29.5
Q ss_pred CCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 203 VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 203 ~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
.++||.|||.... +++..|+..|..||..|...+..
T Consensus 438 v~gVyaaGD~~g~---~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 438 VQGCILAGAANGL---FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCeEEeeccCCc---cCHHHHHHHHHHHHHHHHHHcCC
Confidence 5899999997744 47888999999999999776543
No 367
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=35.36 E-value=1.4e+02 Score=27.87 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=33.8
Q ss_pred HHHHHHhc-----CCceeeCcceeEEEEc-CCceE-EEE---cCCc--EEEeCEEEEecChh
Q 024393 7 PVINTLAK-----GLDIRLGHRVTKITRH-YIGVK-VTV---EGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 7 ~l~~~l~~-----~l~i~~~~~V~~I~~~-~~~v~-v~~---~~g~--~~~ad~VI~a~p~~ 56 (268)
.|.+.|.+ +++|+.++.|.++..+ ++++. |.. .+|+ .+.++.||+|+--.
T Consensus 149 ~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 149 ALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 35555543 5689999999999875 45433 332 3453 56799999998654
No 368
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=35.10 E-value=64 Score=29.24 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=33.3
Q ss_pred HHHHHHHhc--CCceeeCcceeEEEEcCC-ce-EEEE--cCC--cEEEeCEEEEecC
Q 024393 6 LPVINTLAK--GLDIRLGHRVTKITRHYI-GV-KVTV--EGG--KTFVADAVVVAVP 54 (268)
Q Consensus 6 ~~l~~~l~~--~l~i~~~~~V~~I~~~~~-~v-~v~~--~~g--~~~~ad~VI~a~p 54 (268)
..|.++..+ .++|.-++.+..|..+++ .+ .+.+ .++ .++.++.||+|+-
T Consensus 137 ~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATG 193 (518)
T COG0029 137 TALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATG 193 (518)
T ss_pred HHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecC
Confidence 344444443 567888989999988888 34 3333 333 5677899999984
No 369
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=34.91 E-value=1.5e+02 Score=23.47 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHhcCCH-HHHHHHHHHHHHHhcCCCCCCcEEEEcccCCCcCCCcccCc-CCCCCChHHH--HHh-cCCCCCeeeeeccc
Q 024393 139 DIEKMSD-EAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSY-DTVGKSHDLY--ERL-RIPVDNLFFAGEAT 213 (268)
Q Consensus 139 ~~~~~~~-~e~~~~i~~~l~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~-~~~~~~~~~~--~~~-~~p~~~l~~aG~~~ 213 (268)
++..+++ +.+++.+.++|++-|++... .+.. +|...+ ..|..|.+.+ ..+ ....+.+||-||-+
T Consensus 148 eF~e~Dkk~~iR~K~v~~Lr~~F~~~gL--tFSI---------GGQISfDvFP~GWDKtyCLqhle~dgf~~IhFFGDkT 216 (252)
T KOG3189|consen 148 EFEELDKKHKIREKFVEALREEFADYGL--TFSI---------GGQISFDVFPKGWDKTYCLQHLEKDGFDTIHFFGDKT 216 (252)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHhcccCe--eEEE---------CCeEEEeecCCCcchhHHHHHhhhcCCceEEEecccc
Confidence 3444443 46889999999999987221 1111 222221 1244555543 222 23478999999999
Q ss_pred CCC
Q 024393 214 SMS 216 (268)
Q Consensus 214 ~~~ 216 (268)
+++
T Consensus 217 ~~G 219 (252)
T KOG3189|consen 217 MPG 219 (252)
T ss_pred CCC
Confidence 984
No 370
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=34.77 E-value=69 Score=30.06 Aligned_cols=41 Identities=22% Similarity=0.145 Sum_probs=30.9
Q ss_pred CceeeCcceeEEEEcCCceE-E---EEcCCc--EEEeCEEEEecChh
Q 024393 16 LDIRLGHRVTKITRHYIGVK-V---TVEGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~~~v~-v---~~~~g~--~~~ad~VI~a~p~~ 56 (268)
++|+.++.|.+|..+++++. | ...+|+ .+.|+.||+|+-..
T Consensus 148 V~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 148 DNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 78999999999987666543 3 223453 68899999999754
No 371
>PRK07512 L-aspartate oxidase; Provisional
Probab=34.67 E-value=56 Score=29.88 Aligned_cols=40 Identities=30% Similarity=0.199 Sum_probs=28.5
Q ss_pred cCCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l 239 (268)
++++++||-||+.... -++ .++-.|+..|+.|++.+.+..
T Consensus 351 ~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 351 RSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred ccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999997532 122 135567888999999887654
No 372
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=34.47 E-value=49 Score=29.67 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=28.6
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++..+|+|.+||.+.. .....-|...|..||..+.
T Consensus 293 ~~ts~~~VyA~GD~~~~--~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 293 MQTNVPHIYACGDVIGG--IQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred eecCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHHc
Confidence 44567899999999854 3467789999999998875
No 373
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=34.47 E-value=58 Score=30.53 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=29.0
Q ss_pred cCCCCCeeeeecccCCCCC------ccchhhHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYP------GSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~------g~~~gA~~Sg~~aa~~i~~~l 239 (268)
++.+++||-||+.....|+ .++-.|+..|..|++.+.+..
T Consensus 380 ~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 380 MTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred cccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999997432221 356678899999998876643
No 374
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=34.19 E-value=75 Score=30.12 Aligned_cols=42 Identities=19% Similarity=0.064 Sum_probs=35.1
Q ss_pred CCceeeCcceeEEEEcCCc-eEEEEcCCcEEEeCEEEEecChhh
Q 024393 15 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
+..|.-+++|++|....++ +.|.|..| .+++.+||-|+-...
T Consensus 201 GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 201 GALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred CcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 3479999999999988776 56999888 688899999888765
No 375
>PRK07045 putative monooxygenase; Reviewed
Probab=34.08 E-value=60 Score=28.19 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=28.2
Q ss_pred CCCeeeeecccCCC---CCccchhhHHHHHHHHHHHHH
Q 024393 203 VDNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 203 ~~~l~~aG~~~~~~---~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
.+++.++||..|.. .+.+++-|++.|...|+.|..
T Consensus 284 ~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~ 321 (388)
T PRK07045 284 KRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDL 321 (388)
T ss_pred CCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHh
Confidence 37999999998752 234899999999999988854
No 376
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=33.88 E-value=36 Score=31.10 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=27.5
Q ss_pred cCCCCCeeeeecccCC----CCC--c-cchhhHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~----~~~--g-~~~gA~~Sg~~aa~~i~ 236 (268)
.+|+++||-||..+.. .|+ | ++-.|+.+|+.|++.+.
T Consensus 466 g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa 509 (513)
T PRK12837 466 GRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMA 509 (513)
T ss_pred CCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHh
Confidence 4589999999997522 222 2 37889999999999874
No 377
>PRK08275 putative oxidoreductase; Provisional
Probab=33.68 E-value=51 Score=30.48 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=30.7
Q ss_pred CCceeeCcceeEEEEc-CCceE-EE---EcCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRH-YIGVK-VT---VEGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~-~~~v~-v~---~~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|+.++.|.+|..+ ++++. +. ..+|+ .+.++.||+|+-..
T Consensus 151 gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 151 RVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred CCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 4689999999999876 55443 32 23554 57899999999654
No 378
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=33.57 E-value=50 Score=33.67 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=30.2
Q ss_pred CCceeeCcceeEEEEcC-----C----ceE-EEE--c---CCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHY-----I----GVK-VTV--E---GGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~-----~----~v~-v~~--~---~g~--~~~ad~VI~a~p~~ 56 (268)
+++|+++++|+++..++ + +|. |.. . +|+ .+.|+.||+|+--.
T Consensus 561 gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf 619 (1167)
T PTZ00306 561 RVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGF 619 (1167)
T ss_pred CcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCc
Confidence 67899999999999763 2 333 333 2 453 57899999999653
No 379
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=33.55 E-value=53 Score=29.76 Aligned_cols=39 Identities=31% Similarity=0.344 Sum_probs=29.0
Q ss_pred cCCCCCeeeeecccCC-CC------CccchhhHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM-SY------PGSVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~-~~------~g~~~gA~~Sg~~aa~~i~~~ 238 (268)
+++++|||-||+.... .+ +.++-.|+.+|+.|++.+.+.
T Consensus 343 ~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 343 RTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred cccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 4789999999997531 11 235677899999999998654
No 380
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=33.48 E-value=1.2e+02 Score=25.91 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=30.9
Q ss_pred HHHHHh-cCCceeeCcceeEEEEcCCceEEEE--------------------cCCcEEEeCEEEEecCh
Q 024393 8 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTV--------------------EGGKTFVADAVVVAVPL 55 (268)
Q Consensus 8 l~~~l~-~~l~i~~~~~V~~I~~~~~~v~v~~--------------------~~g~~~~ad~VI~a~p~ 55 (268)
+.+.|. .++++++++.|.+++.+++...|.. .+++++.+|.||+++..
T Consensus 216 ~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 216 EIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred HHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 334453 4678999999999875533222321 12357899999998865
No 381
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.15 E-value=55 Score=28.87 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=29.0
Q ss_pred ceeeCcceeEEEEcCC--ceE--EEEcCCcEEEeCEEEEecC
Q 024393 17 DIRLGHRVTKITRHYI--GVK--VTVEGGKTFVADAVVVAVP 54 (268)
Q Consensus 17 ~i~~~~~V~~I~~~~~--~v~--v~~~~g~~~~ad~VI~a~p 54 (268)
.+++|++|+.|...+. ... +.+.++.+++|+.+|+++-
T Consensus 113 ~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G 154 (436)
T COG3486 113 SLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVG 154 (436)
T ss_pred ccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccC
Confidence 3899999997754332 233 7778888999999999874
No 382
>PTZ00052 thioredoxin reductase; Provisional
Probab=32.73 E-value=65 Score=29.32 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=28.6
Q ss_pred cCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
++..+++|-+||.+... +....-|...|..+|+.|..
T Consensus 304 ~Ts~p~IyAiGDv~~~~-~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 304 CTNIPNIFAVGDVVEGR-PELTPVAIKAGILLARRLFK 340 (499)
T ss_pred cCCCCCEEEEEEecCCC-cccHHHHHHHHHHHHHHHhC
Confidence 45578999999987532 34678899999999998863
No 383
>PRK09077 L-aspartate oxidase; Provisional
Probab=32.52 E-value=58 Score=29.96 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=29.6
Q ss_pred cCCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l 239 (268)
++++++||-||+.... .++ .++-.|+..|+.|++.+....
T Consensus 363 ~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 363 RTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred ccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 4689999999997532 121 356778899999999987653
No 384
>PRK09077 L-aspartate oxidase; Provisional
Probab=32.10 E-value=1.4e+02 Score=27.55 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=32.4
Q ss_pred HHHHHhc--CCceeeCcceeEEEEcC------CceE-EEE---cCCc--EEEeCEEEEecChh
Q 024393 8 VINTLAK--GLDIRLGHRVTKITRHY------IGVK-VTV---EGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 8 l~~~l~~--~l~i~~~~~V~~I~~~~------~~v~-v~~---~~g~--~~~ad~VI~a~p~~ 56 (268)
|.+++.+ +++|+.++.|..+..++ +++. |.. .+|+ .+.++.||+|+-..
T Consensus 144 L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 206 (536)
T PRK09077 144 LVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGA 206 (536)
T ss_pred HHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCC
Confidence 4444433 47899999999887653 4433 432 2453 57899999999654
No 385
>PRK07190 hypothetical protein; Provisional
Probab=31.87 E-value=66 Score=29.19 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=23.5
Q ss_pred CCeeeeecccCC--CCC-ccchhhHHHHHHHHHHHH
Q 024393 204 DNLFFAGEATSM--SYP-GSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 204 ~~l~~aG~~~~~--~~~-g~~~gA~~Sg~~aa~~i~ 236 (268)
++++++||..|. ..+ -+|+.+++-+...+..|.
T Consensus 275 gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa 310 (487)
T PRK07190 275 DRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLN 310 (487)
T ss_pred CcEEEEecccccCCCccccchhhhHHHHHHHHHHHH
Confidence 699999999774 222 377777777777666554
No 386
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.78 E-value=99 Score=26.91 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=48.9
Q ss_pred CceeeCcceeEEEEcC---CceEEEEcCCcEEEeCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCccccEEEEEe
Q 024393 16 LDIRLGHRVTKITRHY---IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 92 (268)
Q Consensus 16 l~i~~~~~V~~I~~~~---~~v~v~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (268)
++|...+++.+++... +-..|++.||-...++.||+++-+.+- +++ .|-+..-.-+-+.|.|.|
T Consensus 281 vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWR-n~n------vPGE~e~rnKGVayCPHC------ 347 (520)
T COG3634 281 VDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWR-NMN------VPGEDEYRNKGVAYCPHC------ 347 (520)
T ss_pred chhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchh-cCC------CCchHHHhhCCeeeCCCC------
Confidence 4688888888998752 347799999999999999999998763 222 344432233345677777
Q ss_pred CCCCCCC
Q 024393 93 DKVFWPN 99 (268)
Q Consensus 93 ~~~~~~~ 99 (268)
|.|.+..
T Consensus 348 DGPLF~g 354 (520)
T COG3634 348 DGPLFKG 354 (520)
T ss_pred CCcccCC
Confidence 6666533
No 387
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=31.77 E-value=33 Score=30.45 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 024393 220 SVHGAFSTGLMAAEDCRMRVLER 242 (268)
Q Consensus 220 ~~~gA~~Sg~~aa~~i~~~l~~~ 242 (268)
+.+.|+.||+.||+.|.+++.++
T Consensus 403 GTHtAMKSGmlAAesif~ai~~~ 425 (621)
T KOG2415|consen 403 GTHTAMKSGMLAAESIFEAIKGL 425 (621)
T ss_pred cchhhhhcchhHHHHHHHHHhcC
Confidence 44679999999999999988665
No 388
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=31.72 E-value=1.3e+02 Score=30.31 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=32.7
Q ss_pred HHHHHHhcCCceeeCcceeEEEEcCCceE-----------------EEEcCCcEEEeCEEEEecChh
Q 024393 7 PVINTLAKGLDIRLGHRVTKITRHYIGVK-----------------VTVEGGKTFVADAVVVAVPLG 56 (268)
Q Consensus 7 ~l~~~l~~~l~i~~~~~V~~I~~~~~~v~-----------------v~~~~g~~~~ad~VI~a~p~~ 56 (268)
.+-+++.+++++++++.+.+|.. ++++. +.+.++.++.+|.||+++...
T Consensus 713 Ele~AleeGVe~~~~~~p~~I~~-dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~ 778 (1019)
T PRK09853 713 EYEEALEDGVEFKELLNPESFDA-DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778 (1019)
T ss_pred HHHHHHHcCCEEEeCCceEEEEc-CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence 34556667888999988888863 23222 122233578999999998754
No 389
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=31.68 E-value=5.5 Score=31.40 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=32.4
Q ss_pred CCChHHHHHHHh--cCCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhhhh
Q 024393 2 VRGYLPVINTLA--KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 59 (268)
Q Consensus 2 ~gG~~~l~~~l~--~~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 59 (268)
++|...+.+.|. ..++|++|+....+.. .+....+|.||.|.|++.+-
T Consensus 46 ~~GYT~~fe~mL~h~~I~v~l~td~~~~~~----------~~~~~~~~~viyTG~iDe~F 95 (204)
T PF03275_consen 46 KDGYTKMFENMLDHPNIEVRLNTDFFDIIE----------FGGEPYADKVIYTGPIDEYF 95 (204)
T ss_dssp TTHHHHHHHHHC-STTEEEECS--GGGCHH----------HHCCCTEEEEEE-S-HHHHT
T ss_pred hhCHHHHHHHHhCCCceEEEcCCCHHHhhc----------ccccccCCeEEEeCCHHHHh
Confidence 689999999998 5788999886654443 11234578999999999864
No 390
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=31.59 E-value=54 Score=29.20 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=26.4
Q ss_pred CCCeeeeecccCCCCC---c-cchhhHHHHHHHHHHHHHH
Q 024393 203 VDNLFFAGEATSMSYP---G-SVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 203 ~~~l~~aG~~~~~~~~---g-~~~gA~~Sg~~aa~~i~~~ 238 (268)
++|||.+|+-+....+ | +---|+.||..|++.|.+.
T Consensus 380 ~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 380 IENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred ccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHh
Confidence 6899999998865211 1 1123899999999999854
No 391
>PLN02815 L-aspartate oxidase
Probab=31.24 E-value=1.2e+02 Score=28.38 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=29.1
Q ss_pred cCCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l 239 (268)
+++++|||-||+.... -++ .++-.|+..|+.|++.+.+.+
T Consensus 387 ~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 387 ETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred ceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999997532 121 256678889999999886543
No 392
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=31.17 E-value=65 Score=30.00 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=29.4
Q ss_pred cCCCCCeeeeecccCCC-CC------ccchhhHHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~-~~------g~~~gA~~Sg~~aa~~i~~~l 239 (268)
++++++||-||+....+ ++ .++-.|+..|+.|++.+....
T Consensus 367 ~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 367 ETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred ccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 47899999999874321 21 256778999999999887654
No 393
>PF05862 IceA2: Helicobacter pylori IceA2 protein; InterPro: IPR008655 This family consists of several Helicobacter pylori specific IceA2 proteins. The function of this family is unknown.
Probab=31.05 E-value=1.2e+02 Score=18.38 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=15.5
Q ss_pred eCcceeEEEEcCCceEEEEcCCcEEE
Q 024393 20 LGHRVTKITRHYIGVKVTVEGGKTFV 45 (268)
Q Consensus 20 ~~~~V~~I~~~~~~v~v~~~~g~~~~ 45 (268)
+++.+..+..+++-|.+++.+|+..+
T Consensus 24 YGsN~v~v~~~g~~VA~~ta~Gkvee 49 (59)
T PF05862_consen 24 YGSNAVAVQVDGGIVAAVTANGKVEE 49 (59)
T ss_pred cCCceEEEeeCCCEEEEEecCCceee
Confidence 35556666666666666666664433
No 394
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=30.84 E-value=92 Score=18.86 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcccCCCcCC
Q 024393 145 DEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANS 180 (268)
Q Consensus 145 ~~e~~~~i~~~l~~~~p~~~~~~~~~~~~w~~~~~~ 180 (268)
+..+.+.+.+.+.+.++...+.+.+.......+.|+
T Consensus 17 K~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~~~ 52 (60)
T PRK02289 17 KNALAREVTEVVSRIAKAPKEAIHVFINDMPEGTYY 52 (60)
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhheE
Confidence 456888888999999876444455555544444443
No 395
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=30.73 E-value=53 Score=30.47 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=27.3
Q ss_pred cCCCCCeeeeecccCC----CCC---ccchhhHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM----SYP---GSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~----~~~---g~~~gA~~Sg~~aa~~i~ 236 (268)
.+|+++||-||..+.. .|. .++-.|+.+|+.|++.+.
T Consensus 519 g~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa 562 (564)
T PRK12845 519 GSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA 562 (564)
T ss_pred CCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence 4589999999977532 222 257778999999998874
No 396
>PRK06847 hypothetical protein; Provisional
Probab=30.66 E-value=60 Score=27.92 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=26.9
Q ss_pred CCCeeeeecccCCC---CCccchhhHHHHHHHHHHHH
Q 024393 203 VDNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 203 ~~~l~~aG~~~~~~---~~g~~~gA~~Sg~~aa~~i~ 236 (268)
.+++.++||..|.. .+.+++.|++.|...++.|.
T Consensus 281 ~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~ 317 (375)
T PRK06847 281 RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELA 317 (375)
T ss_pred CCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHh
Confidence 36899999998752 23588999999988888774
No 397
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=30.06 E-value=65 Score=28.99 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=27.9
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++..+++|.+||.+.. ......|...|..||+.|.
T Consensus 306 l~ts~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 306 CQTKERHIYAIGDVIGE--PQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred cccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHc
Confidence 34556899999999854 2367789999999998874
No 398
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=29.97 E-value=3e+02 Score=25.63 Aligned_cols=126 Identities=15% Similarity=0.119 Sum_probs=61.7
Q ss_pred ceeeCcceeEEEEcCCc-e---EEEE-cCCcEE--EeCEEEEecChhhhhcCcccccCCCcHHHHHHHhhc--C-Ccccc
Q 024393 17 DIRLGHRVTKITRHYIG-V---KVTV-EGGKTF--VADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL--G-VGIEN 86 (268)
Q Consensus 17 ~i~~~~~V~~I~~~~~~-v---~v~~-~~g~~~--~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~--~-~~~~~ 86 (268)
.+.--.+|.++..+.++ + .+.+ .+|+++ .|.-||-|+-+.. ...+++-+.. . ..+..
T Consensus 240 ~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs-------------DsIr~Mdd~~~~~i~~pSs 306 (680)
T KOG0042|consen 240 TVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFS-------------DSIRKMDDEDAKPICVPSS 306 (680)
T ss_pred hhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCcc-------------HHHHhhcccccCceeccCC
Confidence 34444456666655433 2 2332 356554 5767777764421 1112221111 1 24445
Q ss_pred EEEEEeCCCCCCCCccceeecCC--CCceeEEEeccccCCccEEEEEeccchHHHHhcCCHHHHHHHHHHHHHHhcC
Q 024393 87 KIIMHFDKVFWPNVEFLGVVSDT--SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP 161 (268)
Q Consensus 87 ~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~p 161 (268)
.+++..+.-|- ..-.|.+.+. +.....|. +..|. ++......+........+.|+=++.+++++..++.
T Consensus 307 GvHIVlP~yY~--P~~mGlldP~TsDgRViFfl---PWqg~-TIaGTTD~pt~v~~~P~PtE~dIqfIL~ev~~yl~ 377 (680)
T KOG0042|consen 307 GVHIVLPGYYC--PENMGLLDPKTSDGRVIFFL---PWQGK-TIAGTTDIPTSVTHSPTPTEDDIQFILKEVQHYLS 377 (680)
T ss_pred ceeEEcccccC--CcccccccCCCCCCcEEEEe---ccCCc-eeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhC
Confidence 57777765442 2334555332 33344443 23454 45444443333334445667778888888888764
No 399
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.95 E-value=68 Score=29.96 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=29.0
Q ss_pred CCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHHH
Q 024393 201 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 201 ~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~l 239 (268)
++++|||-||+.... .++ .++-.|+..|+.|++.+.+..
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 378999999997542 121 257789999999999987653
No 400
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=29.58 E-value=2.3e+02 Score=26.77 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=23.4
Q ss_pred HHHhcC-CCCCeeeeecccCCCCCccchhhHHHHHHHHHHH
Q 024393 196 YERLRI-PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDC 235 (268)
Q Consensus 196 ~~~~~~-p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i 235 (268)
.+.+.+ .++||||||.-..+ .|+ |.|..+|..|.-..
T Consensus 351 ~~~Le~k~~~~lf~AGQinGt--~GY-eEaaaqGl~AgiNa 388 (618)
T PRK05192 351 KPTLETKKIKGLFFAGQINGT--TGY-EEAAAQGLIAGINA 388 (618)
T ss_pred chhheecCCCCeEECcccCCC--hHH-HHHHHHHHHHHHHH
Confidence 344544 36899999999876 244 45555666655443
No 401
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=29.26 E-value=29 Score=24.82 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=34.0
Q ss_pred HHHHHHhcCC-ceeeCcceeEEEEcCC-ceEEEE-cCCcEEEeCEEEEecCh
Q 024393 7 PVINTLAKGL-DIRLGHRVTKITRHYI-GVKVTV-EGGKTFVADAVVVAVPL 55 (268)
Q Consensus 7 ~l~~~l~~~l-~i~~~~~V~~I~~~~~-~v~v~~-~~g~~~~ad~VI~a~p~ 55 (268)
.|+.+|.+++ ++|.+..+.-+..+.. +|+|.+ .+++-+..+.||+++.-
T Consensus 28 ~lAh~L~~~l~~~R~~~~~~~l~PD~KsQVtveY~~~~~P~ri~tivvS~QH 79 (120)
T PF02772_consen 28 VLAHRLARRLAEVRKNGELPWLRPDGKSQVTVEYDENGKPVRIDTIVVSTQH 79 (120)
T ss_dssp HHHHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcccCcccCCCcceeEEEeeccCCceeeeeEEEEEecC
Confidence 3566666665 4777777666766654 488888 67777778888887754
No 402
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=28.62 E-value=73 Score=28.30 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=28.1
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++..+++|-+||.+.. .....-|+..|+.+++.|.
T Consensus 280 ~~Ts~~~IyA~GD~~~~--~~~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 280 LHTTADNIWAMGDVTGG--LQFTYISLDDYRIVRDELL 315 (441)
T ss_pred cccCCCCEEEeeecCCC--ccchhHHHHHHHHHHHHHc
Confidence 45667899999999875 2466778888888888874
No 403
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=28.60 E-value=92 Score=25.28 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=34.7
Q ss_pred HHHHHHhcC-----CceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecChhh
Q 024393 7 PVINTLAKG-----LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 57 (268)
Q Consensus 7 ~l~~~l~~~-----l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 57 (268)
.|.+.|.+. .+|.. ..|.+++.......+.+.. +.+.+|.||+++-+..
T Consensus 71 ~l~d~mrkqs~r~Gt~i~t-EtVskv~~sskpF~l~td~-~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIIT-ETVSKVDLSSKPFKLWTDA-RPVTADAVILATGASA 124 (322)
T ss_pred HHHHHHHHHHHhhcceeee-eehhhccccCCCeEEEecC-CceeeeeEEEecccce
Confidence 466777663 34544 5677888777777776644 4799999999998764
No 404
>PRK08071 L-aspartate oxidase; Provisional
Probab=28.55 E-value=75 Score=29.03 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=27.9
Q ss_pred cCCCCCeeeeecccCC-CCC------ccchhhHHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMR 238 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~-~~~------g~~~gA~~Sg~~aa~~i~~~ 238 (268)
++++++||-||+.... .++ .++-.|+..|+.|++.+...
T Consensus 342 ~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 342 ETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred cccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999997531 111 24667888899999888543
No 405
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=27.90 E-value=1.7e+02 Score=29.43 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=31.3
Q ss_pred HHHHHHhcCCceeeCcceeEEEEcCCceEEE---------------EcCC--cEEEeCEEEEecChh
Q 024393 7 PVINTLAKGLDIRLGHRVTKITRHYIGVKVT---------------VEGG--KTFVADAVVVAVPLG 56 (268)
Q Consensus 7 ~l~~~l~~~l~i~~~~~V~~I~~~~~~v~v~---------------~~~g--~~~~ad~VI~a~p~~ 56 (268)
.+.+++.++++++++..+.+|. ++++.+. ..+| .++.+|.||+|+...
T Consensus 711 El~~aleeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~ 775 (1012)
T TIGR03315 711 ELEEALEDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775 (1012)
T ss_pred HHHHHHHcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc
Confidence 4455666788888888888886 3333221 1123 367899999998753
No 406
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=27.68 E-value=2.6e+02 Score=26.46 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=29.8
Q ss_pred HHhcCCceeeCcceeEEEEc-CCceE-EEE---------cC---------C--cEEEeCEEEEecCh
Q 024393 11 TLAKGLDIRLGHRVTKITRH-YIGVK-VTV---------EG---------G--KTFVADAVVVAVPL 55 (268)
Q Consensus 11 ~l~~~l~i~~~~~V~~I~~~-~~~v~-v~~---------~~---------g--~~~~ad~VI~a~p~ 55 (268)
+..++++|++++.+.+|..+ ++++. |.+ .+ | .++.+|.||+++..
T Consensus 516 ~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~ 582 (654)
T PRK12769 516 AREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGF 582 (654)
T ss_pred HHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccC
Confidence 33557889999999999754 34432 322 11 2 25889999998864
No 407
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=26.97 E-value=2.5e+02 Score=26.51 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=32.5
Q ss_pred HHHHHHhcCCceeeCcceeEEEEcC-CceE-EE---Ec------C---------C--cEEEeCEEEEecCh
Q 024393 7 PVINTLAKGLDIRLGHRVTKITRHY-IGVK-VT---VE------G---------G--KTFVADAVVVAVPL 55 (268)
Q Consensus 7 ~l~~~l~~~l~i~~~~~V~~I~~~~-~~v~-v~---~~------~---------g--~~~~ad~VI~a~p~ 55 (268)
.+.++..++++|++++.+.+|..++ +++. +. +. + | .++.+|.||+++-.
T Consensus 495 e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~ 565 (639)
T PRK12809 495 EVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGF 565 (639)
T ss_pred HHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCC
Confidence 3445556788999999999997643 4443 22 11 1 2 26789999998863
No 408
>PRK07538 hypothetical protein; Provisional
Probab=24.92 E-value=1e+02 Score=27.12 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=26.4
Q ss_pred CCeeeeecccCCC---CCccchhhHHHHHHHHHHHH
Q 024393 204 DNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 204 ~~l~~aG~~~~~~---~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++.++||..|+- .+.+++-|++.|...++.|.
T Consensus 297 grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~ 332 (413)
T PRK07538 297 GRVTLLGDAAHPMYPVGSNGASQAILDARALADALA 332 (413)
T ss_pred CcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHH
Confidence 6899999998752 23488889999988888775
No 409
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=24.75 E-value=57 Score=29.01 Aligned_cols=35 Identities=31% Similarity=0.285 Sum_probs=24.5
Q ss_pred CCCCeeeeecccCCCCC----ccchhhHHHHHHHHHHHH
Q 024393 202 PVDNLFFAGEATSMSYP----GSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 202 p~~~l~~aG~~~~~~~~----g~~~gA~~Sg~~aa~~i~ 236 (268)
+++|||.||.-+.+..+ -+---|+.||..||+.|+
T Consensus 381 ~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 381 TIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred ccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 47999999988765211 112238889999998873
No 410
>PTZ00058 glutathione reductase; Provisional
Probab=24.33 E-value=1e+02 Score=28.61 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=30.1
Q ss_pred HhcCCCCCeeeeecccCCC--------------------------------CCccchhhHHHHHHHHHHHHH
Q 024393 198 RLRIPVDNLFFAGEATSMS--------------------------------YPGSVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 198 ~~~~p~~~l~~aG~~~~~~--------------------------------~~g~~~gA~~Sg~~aa~~i~~ 237 (268)
.+++..+++|-+||.+... .....+-|...|+.+|+.|..
T Consensus 360 ~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 360 NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 3556789999999998721 134567799999999999863
No 411
>PRK06753 hypothetical protein; Provisional
Probab=23.92 E-value=1e+02 Score=26.47 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=25.7
Q ss_pred CCeeeeecccCCC---CCccchhhHHHHHHHHHHH
Q 024393 204 DNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDC 235 (268)
Q Consensus 204 ~~l~~aG~~~~~~---~~g~~~gA~~Sg~~aa~~i 235 (268)
+++.++||..|.- .+.+++.|++.|...++.+
T Consensus 270 ~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L 304 (373)
T PRK06753 270 GRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCL 304 (373)
T ss_pred CCEEEEecccccCCCCcCccHHHHHHHHHHHHHHh
Confidence 6899999998752 3358889999998888776
No 412
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=23.77 E-value=85 Score=26.87 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=40.7
Q ss_pred CCCcccCcCCCCCChHHHH----HhcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 024393 179 NSLGSYSYDTVGKSHDLYE----RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 241 (268)
Q Consensus 179 ~~~g~~~~~~~~~~~~~~~----~~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l~~ 241 (268)
...|+|+.+.|..+..+.. ...-|.+.|.|.||++.|+ .|.+--...++.-|..++....+
T Consensus 54 nq~GGYTGMTP~DFr~fV~aiA~~~gfp~e~liLGGDHLGPN--~Wq~~pA~eAM~ka~~mv~AYv~ 118 (426)
T COG4573 54 NQFGGYTGMTPADFRGFVFAIADKLGFPRERLILGGDHLGPN--PWQHLPAAEAMAKADDLVKAYVA 118 (426)
T ss_pred cccCCcCCCChHHHHHHHHHHHHHhCCcHHHHhccCCcCCCC--ccccCCHHHHHHHHHHHHHHHHH
Confidence 3457788777766554432 2334668999999999995 46666666677767776665443
No 413
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=23.75 E-value=83 Score=28.06 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=31.3
Q ss_pred CCceeeCcceeEEEEcCCceEEEEcCCcEEEeCEEEEecCh
Q 024393 15 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 55 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 55 (268)
++-+..+..|.+|..+++.|. .++|.++.+|.+++|+-.
T Consensus 271 GvAvl~G~kvvkid~~d~~V~--LnDG~~I~YdkcLIATG~ 309 (659)
T KOG1346|consen 271 GVAVLRGRKVVKIDEEDKKVI--LNDGTTIGYDKCLIATGV 309 (659)
T ss_pred ceEEEeccceEEeecccCeEE--ecCCcEeehhheeeecCc
Confidence 345889999999998877655 457889999999998854
No 414
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=23.24 E-value=78 Score=27.29 Aligned_cols=27 Identities=48% Similarity=0.747 Sum_probs=18.6
Q ss_pred CCCeeeeecccCCCCCccchhhHHHHHHHH
Q 024393 203 VDNLFFAGEATSMSYPGSVHGAFSTGLMAA 232 (268)
Q Consensus 203 ~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa 232 (268)
.+||+|||.-+... |+++.|. +|..|.
T Consensus 334 ~p~l~fAGQitG~E--GYveSaA-~Gllag 360 (439)
T COG1206 334 RPNLFFAGQITGVE--GYVESAA-SGLLAG 360 (439)
T ss_pred CCCcEEeeeeecch--hhhHHhh-hhHHHh
Confidence 47999999999763 6777653 444443
No 415
>PRK08163 salicylate hydroxylase; Provisional
Probab=22.97 E-value=95 Score=26.94 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=25.7
Q ss_pred CCeeeeecccCCC---CCccchhhHHHHHHHHHHHH
Q 024393 204 DNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDCR 236 (268)
Q Consensus 204 ~~l~~aG~~~~~~---~~g~~~gA~~Sg~~aa~~i~ 236 (268)
+++.++||..|.. .+-+++-|++.|...++.|.
T Consensus 286 grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~ 321 (396)
T PRK08163 286 GRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALE 321 (396)
T ss_pred CcEEEEecccccCCcchhccHHHHHHHHHHHHHHHH
Confidence 5899999998753 23478889999888887764
No 416
>PF11423 Repressor_Mnt: Regulatory protein Mnt; InterPro: IPR024421 Mnt is a repressor which is involved in the genetic switch between lysogenic and lytic growth in bacteriophage P22. The C-terminal domain of the protein consists of a dimer of two antiparallel coiled coils with a right handed twist, which is both stronger and has closer inter-helical separation compared with those found in left-handed coiled coils []. This entry is represented by Bacteriophage P22, Mnt. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 1QEY_C 1MNT_B.
Probab=22.45 E-value=87 Score=16.10 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=15.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhc
Q 024393 137 ARDIEKMSDEAAANFAFTQLKKIL 160 (268)
Q Consensus 137 ~~~~~~~~~~e~~~~i~~~l~~~~ 160 (268)
+....+.-.+.+++.+.+.|+.++
T Consensus 4 AER~Ad~qse~vkk~VfetLK~~Y 27 (30)
T PF11423_consen 4 AERLADQQSEMVKKMVFETLKDMY 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444334678888888888775
No 417
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.42 E-value=1.4e+02 Score=28.27 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=25.1
Q ss_pred cCCCCCeeeeecccCCCCCc------cchhhHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATSMSYPG------SVHGAFSTGLMAAED 234 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~~~~~g------~~~gA~~Sg~~aa~~ 234 (268)
++.++|||-||+.....|+. ++-+|+..|++|+..
T Consensus 416 ~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 416 MSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred ccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence 46799999999975332332 366778888888766
No 418
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=21.58 E-value=1.1e+02 Score=30.16 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=30.8
Q ss_pred hcCCCCCeeeeecccCCCCCccchhhHHHHHHHHHHHHHHH
Q 024393 199 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 239 (268)
Q Consensus 199 ~~~p~~~l~~aG~~~~~~~~g~~~gA~~Sg~~aa~~i~~~l 239 (268)
.++.++|||-||+..... ..++-+|+..|..|+..+.+.+
T Consensus 370 ~~T~v~GLfAaGE~a~~~-~nsl~~a~v~G~~Ag~~a~~~~ 409 (897)
T PRK13800 370 ARTTVPGLYAAGDLACVP-HNYMIGAFVFGDLAGAHAAGTL 409 (897)
T ss_pred CcccCCCeEechhccCcc-hhhhhhHHHhHHHHHHHHHHHH
Confidence 356799999999976543 2467788999999999887654
No 419
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=21.30 E-value=1.6e+02 Score=18.92 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=15.4
Q ss_pred eeEEEEcCC-ceEEEEcCCcEEEe
Q 024393 24 VTKITRHYI-GVKVTVEGGKTFVA 46 (268)
Q Consensus 24 V~~I~~~~~-~v~v~~~~g~~~~a 46 (268)
|.+|...++ ++.|...+|++..+
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~~~~ 24 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGETRIF 24 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEE
T ss_pred CeEEEEcCCcEEEEEEcCCCEEEE
Confidence 467777777 67788999965543
No 420
>PLN02815 L-aspartate oxidase
Probab=21.13 E-value=1.4e+02 Score=27.93 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=29.1
Q ss_pred CCceeeCcceeEEEEcC-Cc---eE-EEE---cCCc--EEEeCEEEEecChh
Q 024393 15 GLDIRLGHRVTKITRHY-IG---VK-VTV---EGGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 15 ~l~i~~~~~V~~I~~~~-~~---v~-v~~---~~g~--~~~ad~VI~a~p~~ 56 (268)
+++|+.++.+.++..++ ++ |. +.. .+|+ .+.|+.||+|+--.
T Consensus 170 ~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 170 NITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred CCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 46899999999988753 32 33 332 3453 56799999999643
No 421
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.09 E-value=3.2e+02 Score=25.52 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=28.6
Q ss_pred CceeeCcceeEEEEc-CCceE-EEE--c-CCc--EEEeCEEEEecChh
Q 024393 16 LDIRLGHRVTKITRH-YIGVK-VTV--E-GGK--TFVADAVVVAVPLG 56 (268)
Q Consensus 16 l~i~~~~~V~~I~~~-~~~v~-v~~--~-~g~--~~~ad~VI~a~p~~ 56 (268)
++|..++.+.++..+ +++|. |.. . +++ .+.|+.||+|+--.
T Consensus 152 i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 199 (589)
T PRK08641 152 VTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGP 199 (589)
T ss_pred cEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCC
Confidence 568899999998875 45543 332 2 343 46799999999654
No 422
>PF03550 LolB: Outer membrane lipoprotein LolB; InterPro: IPR004565 This protein, LolB, is known so far only in the gamma subdivision of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. In Escherichia coli, lipoproteins are anchored to the periplasmic side of either the inner or outer membrane through N-terminal lipids, depending on the lipoprotein-sorting signal present at position 2 []. Five Lol proteins are involved in the sorting and outer membrane localization of lipoproteins. LolCDE, an ATP binding cassette (ABC) transporter, in the inner membrane releases outer membrane-directed lipoproteins from the inner membrane in an ATP-dependent manner, leading to the formation of a water-soluble complex between the lipoprotein and LolA. The LolA-lipoprotein complex crosses the periplasm and then interacts with outer membrane receptor LolB, which is essential for the anchoring of lipoproteins to the outer membrane.; GO: 0015031 protein transport, 0009279 cell outer membrane; PDB: 1IWM_B 1IWN_A.
Probab=20.81 E-value=1.6e+02 Score=22.02 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=18.0
Q ss_pred eCcceeEEEEcCCceEEEEcCCcEEEe
Q 024393 20 LGHRVTKITRHYIGVKVTVEGGKTFVA 46 (268)
Q Consensus 20 ~~~~V~~I~~~~~~v~v~~~~g~~~~a 46 (268)
++..+.+|+.+.+.+.+...+|+++.+
T Consensus 41 lG~~~~~l~~~~~~~~L~~~~g~~~~a 67 (157)
T PF03550_consen 41 LGQTVARLEGDPQGATLIDSDGQTYQA 67 (157)
T ss_dssp TS-EEEEEEEETTEEEEE-TTS-EEEE
T ss_pred CCccEEEEEECCCEEEEEECCCcEEec
Confidence 467778888877888888777776654
No 423
>PRK08401 L-aspartate oxidase; Provisional
Probab=20.80 E-value=1.3e+02 Score=27.03 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=26.7
Q ss_pred cCCCCCeeeeecccC-CCCC-c-----cchhhHHHHHHHHHHHHH
Q 024393 200 RIPVDNLFFAGEATS-MSYP-G-----SVHGAFSTGLMAAEDCRM 237 (268)
Q Consensus 200 ~~p~~~l~~aG~~~~-~~~~-g-----~~~gA~~Sg~~aa~~i~~ 237 (268)
++++++||-||+... .-++ + ++-.|+..|+.|++.+.+
T Consensus 320 ~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 320 RTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 478999999999863 2122 1 344478889999988854
No 424
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=20.43 E-value=1.8e+02 Score=16.26 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=12.9
Q ss_pred EEcCCceEEEEcCCcEEE
Q 024393 28 TRHYIGVKVTVEGGKTFV 45 (268)
Q Consensus 28 ~~~~~~v~v~~~~g~~~~ 45 (268)
+..+++++|.+.+|++.+
T Consensus 20 ~~~g~~vtV~~~~G~~~t 37 (42)
T PF02736_consen 20 EEEGDKVTVKTEDGKEVT 37 (42)
T ss_dssp EEESSEEEEEETTTEEEE
T ss_pred EEcCCEEEEEECCCCEEE
Confidence 456777889888886543
No 425
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.42 E-value=2.6e+02 Score=25.38 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=25.1
Q ss_pred eeCcceeEEEEc--CCceEEEEcCCcEEEeCEEEEec
Q 024393 19 RLGHRVTKITRH--YIGVKVTVEGGKTFVADAVVVAV 53 (268)
Q Consensus 19 ~~~~~V~~I~~~--~~~v~v~~~~g~~~~ad~VI~a~ 53 (268)
+....+.++... ..++.+...+|....||-+|+++
T Consensus 124 ~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 124 TIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred EEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 344555666666 34577888889888999888877
No 426
>PRK06834 hypothetical protein; Provisional
Probab=20.14 E-value=1.3e+02 Score=27.30 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=22.2
Q ss_pred CCCeeeeecccCCC--CCc-cchhhHHHHHHHHHHH
Q 024393 203 VDNLFFAGEATSMS--YPG-SVHGAFSTGLMAAEDC 235 (268)
Q Consensus 203 ~~~l~~aG~~~~~~--~~g-~~~gA~~Sg~~aa~~i 235 (268)
.++++|+||..|.. .+| +++.++.-+...+-.+
T Consensus 264 ~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkL 299 (488)
T PRK06834 264 DGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKL 299 (488)
T ss_pred CCcEEEEeeccccCCccccccccccHHHHHHHHHHH
Confidence 36999999997752 233 7777777776554443
Done!