BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024395
(268 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/268 (92%), Positives = 256/268 (95%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MAS + AATASSS+ LR TPFLGQ ++AN LKDVV MGN KY MGNELWYGPDRVKYLG
Sbjct: 1 MASTVMAATASSSSVLRPTPFLGQRGSSANPLKDVVSMGNGKYIMGNELWYGPDRVKYLG 60
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE
Sbjct: 61 PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
KW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING
Sbjct: 121 KWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
Query: 181 LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
Query: 241 PLENLLDHLENPVANNAWVYATKFVPGS 268
PLENLLDHL+NPVANNAWVYATKF PGS
Sbjct: 241 PLENLLDHLDNPVANNAWVYATKFSPGS 268
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust.
Identities = 248/266 (93%), Positives = 257/266 (96%), Gaps = 1/266 (0%)
Query: 4 IMAAATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
++ AATASSST LR TPFLGQ+R +N L+DVVPMG KYTMGNELWYGPDRVKYLGPF
Sbjct: 1 MLMAATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGPF 60
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW
Sbjct: 61 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
LRVDFKEP+WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP
Sbjct: 121 LRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 180
Query: 183 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
GVG+GN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 GVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
ENLLDHL+NPVANNAWVYATKFVPGS
Sbjct: 241 ENLLDHLDNPVANNAWVYATKFVPGS 266
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/269 (90%), Positives = 255/269 (94%), Gaps = 1/269 (0%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
M + + AATASSST LR T FLGQ+R + AN L++VVPMG K+TMGNELWYGPDRVKYL
Sbjct: 1 MVATVMAATASSSTGLRPTQFLGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYL 60
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA GCITPEVL
Sbjct: 61 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVL 120
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
EKW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG+RIN
Sbjct: 121 EKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRIN 180
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GLPGVGEGNDLYPGG YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GLPGVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENLLDHL+NPVANNAW YATKFVPGS
Sbjct: 241 GPLENLLDHLDNPVANNAWAYATKFVPGS 269
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/269 (90%), Positives = 255/269 (94%), Gaps = 1/269 (0%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
M + + AATASSST LR T F+GQ+R + AN L++VVPMG K+TMGNELWYGPDRVKYL
Sbjct: 1 MVATVMAATASSSTGLRPTQFVGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYL 60
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA GCITPEVL
Sbjct: 61 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVL 120
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
EKW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG+RIN
Sbjct: 121 EKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRIN 180
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GLPGVGEGNDLYPGG YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GLPGVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENLLDHL+NPVANNAW YATKFVPGS
Sbjct: 241 GPLENLLDHLDNPVANNAWAYATKFVPGS 269
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/262 (92%), Positives = 250/262 (95%)
Query: 7 AATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQT 66
A+ ASSST R TPFLG+ + AN L+DVV MGN KY MGNELWYGPDRVKYLGPFSAQT
Sbjct: 2 ASLASSSTIARPTPFLGKKGSNANPLRDVVSMGNGKYIMGNELWYGPDRVKYLGPFSAQT 61
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVLEKW++VD
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 121
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE
Sbjct: 122 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 181
Query: 187 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 246
GNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 182 GNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 241
Query: 247 DHLENPVANNAWVYATKFVPGS 268
DHL+NPVANNAWVYATKFVPGS
Sbjct: 242 DHLDNPVANNAWVYATKFVPGS 263
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/269 (90%), Positives = 254/269 (94%), Gaps = 2/269 (0%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MA+ + AAT SS T L+ATPFLGQ + ANAL+DVV MG KYTMGN+LWYGPDRVKYL
Sbjct: 1 MAATLMAATTSSGT-LKATPFLGQGKGANANALRDVVSMGTGKYTMGNDLWYGPDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVL
Sbjct: 60 GPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RIN
Sbjct: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRIN 179
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GL GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 180 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENLLDHL+NPVANNAWVYATKF PGS
Sbjct: 240 GPLENLLDHLDNPVANNAWVYATKFSPGS 268
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/262 (91%), Positives = 250/262 (95%)
Query: 7 AATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQT 66
A+ ASSST +R TPFLG+ + AN L+DVV MGN KY M NELWYGPDRVKYLGPFSAQT
Sbjct: 2 ASLASSSTIVRPTPFLGKRGSNANPLRDVVSMGNGKYIMSNELWYGPDRVKYLGPFSAQT 61
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVLEKW++VD
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 121
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE
Sbjct: 122 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 181
Query: 187 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 246
GNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 182 GNDLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 241
Query: 247 DHLENPVANNAWVYATKFVPGS 268
DHL+NPVANNAWVYATKFVPGS
Sbjct: 242 DHLDNPVANNAWVYATKFVPGS 263
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/264 (90%), Positives = 255/264 (96%), Gaps = 1/264 (0%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
+ AATASS+T ++ TPFLGQ R +AN L+DVV MG +K+TMGN+LWYGPDRVKYLGPFSA
Sbjct: 3 LMAATASSATVVKQTPFLGQ-RKSANPLRDVVAMGTSKFTMGNDLWYGPDRVKYLGPFSA 61
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
QTPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVL+KW+R
Sbjct: 62 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVR 121
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
VDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQ+VLMGLVEGFRINGLP V
Sbjct: 122 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDV 181
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 244
GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 182 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
Query: 245 LLDHLENPVANNAWVYATKFVPGS 268
LLDHL+NPVANNAWVYATKFVPG+
Sbjct: 242 LLDHLDNPVANNAWVYATKFVPGA 265
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/269 (90%), Positives = 254/269 (94%), Gaps = 3/269 (1%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MA+ + AAT SS +L+ATPFLGQ + ANAL+DVV MG KYTMGN+LWYGPDRVKYL
Sbjct: 1 MAATLMAAT--SSGTLKATPFLGQGKGANANALRDVVSMGTGKYTMGNDLWYGPDRVKYL 58
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVL
Sbjct: 59 GPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 118
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RIN
Sbjct: 119 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRIN 178
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GL GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENLLDHL+NPVANNAWVYATKF PGS
Sbjct: 239 GPLENLLDHLDNPVANNAWVYATKFAPGS 267
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/261 (91%), Positives = 252/261 (96%), Gaps = 1/261 (0%)
Query: 8 ATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTP 67
ATASS+T ++ TPFLGQ R +AN L+DVV MG K+TMGN+LWYGPDRVKYLGPFSAQTP
Sbjct: 6 ATASSATVVKQTPFLGQ-RKSANPLRDVVAMGTPKFTMGNDLWYGPDRVKYLGPFSAQTP 64
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127
SYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVL+KW+RVDF
Sbjct: 65 SYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVDF 124
Query: 128 KEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEG 187
KEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQ+VLMGLVEGFRINGLP VGEG
Sbjct: 125 KEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDVGEG 184
Query: 188 NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLD 247
NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLD
Sbjct: 185 NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLD 244
Query: 248 HLENPVANNAWVYATKFVPGS 268
HL+NPVANNAWVYATKFVPG+
Sbjct: 245 HLDNPVANNAWVYATKFVPGA 265
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/268 (89%), Positives = 257/268 (95%), Gaps = 3/268 (1%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MAS+ AATASS+T ++ATPFLGQ++ AN L+DVV MG+A++TM N+LWYGPDRVKYLG
Sbjct: 1 MASM--AATASSTTVVKATPFLGQTKN-ANPLRDVVAMGSARFTMSNDLWYGPDRVKYLG 57
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCI PEVLE
Sbjct: 58 PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLE 117
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
KW++VDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING
Sbjct: 118 KWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 177
Query: 181 LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
LPGVGEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 178 LPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 241 PLENLLDHLENPVANNAWVYATKFVPGS 268
PLENLLDHL+NPVANNAWVYATKFVPG+
Sbjct: 238 PLENLLDHLDNPVANNAWVYATKFVPGA 265
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/269 (88%), Positives = 251/269 (93%), Gaps = 1/269 (0%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MA+ + AAT+ S T L+ TPFLGQ + + N L+DVV MG+ KY+M NELWYGPDRVKYL
Sbjct: 1 MAATLMAATSGSGTVLKPTPFLGQGKASNGNPLRDVVSMGSGKYSMSNELWYGPDRVKYL 60
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVL
Sbjct: 61 GPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 120
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN
Sbjct: 121 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GL GVGEGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GLDGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENLLDHL+NPVANNAWVYATKF PGS
Sbjct: 241 GPLENLLDHLDNPVANNAWVYATKFAPGS 269
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/263 (90%), Positives = 250/263 (95%), Gaps = 1/263 (0%)
Query: 7 AATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQ 65
A ASSST +RATPFLG ++ T AN L+DVV MG K+TMG++LWYGPDRVKYLGPFSAQ
Sbjct: 2 AMAASSSTVVRATPFLGLTKATNANPLRDVVSMGPGKFTMGSDLWYGPDRVKYLGPFSAQ 61
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
TPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GCITPEVLEKW++V
Sbjct: 62 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWVKV 121
Query: 126 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
DFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE FRINGLPGVG
Sbjct: 122 DFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVESFRINGLPGVG 181
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
EGNDLYPGGQYFDPLGLADDPVT AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 182 EGNDLYPGGQYFDPLGLADDPVTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
Query: 246 LDHLENPVANNAWVYATKFVPGS 268
LDHL+NPVANNAWVYATKFVPGS
Sbjct: 242 LDHLDNPVANNAWVYATKFVPGS 264
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/253 (92%), Positives = 246/253 (97%)
Query: 16 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP 75
++ TPFLGQ + AN L+DVV MG +++TMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP
Sbjct: 14 VKQTPFLGQRKGAANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP 73
Query: 76 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKA 135
GDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVLEKW+RVDFKEPVWFKA
Sbjct: 74 GDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKA 133
Query: 136 GAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQ 195
G+QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGN+LYPGGQ
Sbjct: 134 GSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQ 193
Query: 196 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVAN 255
YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH++NPVAN
Sbjct: 194 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVAN 253
Query: 256 NAWVYATKFVPGS 268
NAWVYATKFVPGS
Sbjct: 254 NAWVYATKFVPGS 266
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/253 (92%), Positives = 246/253 (97%)
Query: 16 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP 75
++ TPFLGQ + AN L+DVV MG +++TMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP
Sbjct: 12 VKQTPFLGQRKGAANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP 71
Query: 76 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKA 135
GDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVLEKW+RVDFKEPVWFKA
Sbjct: 72 GDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKA 131
Query: 136 GAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQ 195
G+QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGN+LYPGGQ
Sbjct: 132 GSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQ 191
Query: 196 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVAN 255
YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH++NPVAN
Sbjct: 192 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVAN 251
Query: 256 NAWVYATKFVPGS 268
NAWVYATKFVPGS
Sbjct: 252 NAWVYATKFVPGS 264
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/265 (88%), Positives = 250/265 (94%), Gaps = 1/265 (0%)
Query: 4 IMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
+ A TA+ S ++ T FLGQ+R+++ AL+DVV MGN K+TM NELWYGPDRVKYLGPFS
Sbjct: 1 MAATVTAAGSATVLKTRFLGQTRSSS-ALRDVVAMGNGKFTMSNELWYGPDRVKYLGPFS 59
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
AQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW+
Sbjct: 60 AQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWV 119
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
+VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL G
Sbjct: 120 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDG 179
Query: 184 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF+QAIVTGKGPLE
Sbjct: 180 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFIQAIVTGKGPLE 239
Query: 244 NLLDHLENPVANNAWVYATKFVPGS 268
NLLDHL++PVANNAWVYATKF PGS
Sbjct: 240 NLLDHLDDPVANNAWVYATKFAPGS 264
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/269 (88%), Positives = 247/269 (91%), Gaps = 3/269 (1%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRT-TANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MAS + AAT S TPFLGQ RT A+ L+DV N + TM N+LWYGPDRVKYL
Sbjct: 1 MASTIMAAT--SRVVAAKTPFLGQGRTANASPLRDVAAAANGRITMSNDLWYGPDRVKYL 58
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL
Sbjct: 59 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 118
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RIN
Sbjct: 119 QKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRIN 178
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENLLDHL+NPVANNAWVYATKF PGS
Sbjct: 239 GPLENLLDHLDNPVANNAWVYATKFAPGS 267
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/259 (89%), Positives = 248/259 (95%), Gaps = 1/259 (0%)
Query: 11 SSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSY 69
SS T ++ +PFLGQ++ + +N L+DVV MG KYTMGN+LWYGPDRVKYLGPFSAQTPSY
Sbjct: 12 SSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSY 71
Query: 70 LTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKE 129
LTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVLEKW+RVDFKE
Sbjct: 72 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKE 131
Query: 130 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND 189
PVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLPGVGEGN+
Sbjct: 132 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNN 191
Query: 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
LYPG QYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL
Sbjct: 192 LYPGDQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 251
Query: 250 ENPVANNAWVYATKFVPGS 268
++PVANNAWVYATKFVPGS
Sbjct: 252 DDPVANNAWVYATKFVPGS 270
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/269 (87%), Positives = 246/269 (91%), Gaps = 3/269 (1%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRT-TANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MAS + AAT S TPFLGQ RT A+ L+DV N + TM N+LWYGPDRVKYL
Sbjct: 1 MASTIMAAT--SRVVAAKTPFLGQGRTANASPLRDVAAAANGRITMSNDLWYGPDRVKYL 58
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYLTGEF GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL
Sbjct: 59 GPFSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 118
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
EKW+RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RIN
Sbjct: 119 EKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRIN 178
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELRVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENLLDHL+NPVANNAWVYATKF PGS
Sbjct: 239 GPLENLLDHLDNPVANNAWVYATKFAPGS 267
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/270 (87%), Positives = 247/270 (91%), Gaps = 4/270 (1%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANA--LKDVVPMGNAKYTMGNELWYGPDRVKY 58
MAS + AAT S TPFLGQ R ANA L+DV + + TMGN+LWYGPDRVKY
Sbjct: 1 MASTIMAAT--SRVVAAKTPFLGQGRAAANASPLRDVAAAASGRITMGNDLWYGPDRVKY 58
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV
Sbjct: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
LEKW+RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRI
Sbjct: 119 LEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI 178
Query: 179 NGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
NGL GVGEGN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 179 NGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGPLENLLDHL++PVANNAWVYATKF PGS
Sbjct: 239 KGPLENLLDHLDDPVANNAWVYATKFAPGS 268
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/265 (86%), Positives = 248/265 (93%), Gaps = 1/265 (0%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTA-NALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
MA+ SSS+ L T FLGQ++ ++ N L+DVV +G+ KYTMGN+LWYGPDRVKYLGPFS
Sbjct: 1 MASTFTSSSSVLSPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 60
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
QTPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GCITPEVL+KW+
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
RVDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL G
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 180
Query: 184 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 244 NLLDHLENPVANNAWVYATKFVPGS 268
NLLDHL+NPVANNAW +ATKF PG+
Sbjct: 241 NLLDHLDNPVANNAWAFATKFAPGA 265
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/265 (86%), Positives = 248/265 (93%), Gaps = 1/265 (0%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTA-NALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
MA+ SSS+ L T FLGQ++ ++ N L+DVV +G+ KYTMGN+LWYGPDRVKYLGPFS
Sbjct: 1 MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 60
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
QTPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GCITPEVL+KW+
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
RVDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL G
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 180
Query: 184 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 244 NLLDHLENPVANNAWVYATKFVPGS 268
NLLDHL+NPVANNAW +ATKF PG+
Sbjct: 241 NLLDHLDNPVANNAWAFATKFAPGA 265
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/265 (86%), Positives = 250/265 (94%), Gaps = 1/265 (0%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTA-NALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
MA+ SSS+ L TPFLGQ++ ++ N L+DVV +G+ KYTMGN+LWYGPDRVKYLGPFS
Sbjct: 1 MASTFTSSSSVLTPTPFLGQTKGSSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 60
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
QTPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GCITPEVL+KW+
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
RV+FKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL G
Sbjct: 121 RVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 180
Query: 184 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 244 NLLDHLENPVANNAWVYATKFVPGS 268
NLLDH+++PVANNAW +ATKFVPG+
Sbjct: 241 NLLDHIDDPVANNAWAFATKFVPGA 265
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/269 (86%), Positives = 245/269 (91%), Gaps = 3/269 (1%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRT-TANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MAS + AAT S TPFLGQ R A+ L+DV N + TM N+LWYGPDR+KYL
Sbjct: 1 MASTIMAAT--SRVVAAKTPFLGQGRAANASPLRDVAAAANGRITMSNDLWYGPDRLKYL 58
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL
Sbjct: 59 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 118
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+KW+RV FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RIN
Sbjct: 119 QKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRIN 178
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENLLDH++NPVANNAWVYATKF PGS
Sbjct: 239 GPLENLLDHIDNPVANNAWVYATKFAPGS 267
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 237/271 (87%), Positives = 246/271 (90%), Gaps = 5/271 (1%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANA--LKDVVPMG-NAKYTMGNELWYGPDRVK 57
MAS + AAT S TPFLGQ R ANA L+DV + TMGN+LWYGPDRVK
Sbjct: 1 MASTIMAAT--SRIVAAKTPFLGQGRAAANASPLRDVAAAAAGGRITMGNDLWYGPDRVK 58
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE
Sbjct: 59 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 118
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
VLEKW+RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFR
Sbjct: 119 VLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFR 178
Query: 178 INGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
INGL GVGEGN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 179 INGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 238
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGPLENLLDHL++PVANNAWVYATKF PGS
Sbjct: 239 GKGPLENLLDHLDDPVANNAWVYATKFAPGS 269
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/250 (91%), Positives = 239/250 (95%), Gaps = 1/250 (0%)
Query: 20 PFLGQSRTT-ANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDY 78
PFLGQ+R + N L+DVV MG KYTM N+LWYGPDRVKYLGPFSAQTPSYL GEFPGDY
Sbjct: 15 PFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDY 74
Query: 79 GWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQ 138
GWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVLEKWL+VDFKEPVWFKAG+Q
Sbjct: 75 GWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGSQ 134
Query: 139 IFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFD 198
IF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL GVGEGNDLYPGGQYFD
Sbjct: 135 IFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFD 194
Query: 199 PLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAW 258
PLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL++PVANNAW
Sbjct: 195 PLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAW 254
Query: 259 VYATKFVPGS 268
VYATKF PGS
Sbjct: 255 VYATKFAPGS 264
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/269 (85%), Positives = 243/269 (90%), Gaps = 3/269 (1%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRT-TANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MAS + AAT S TPFLGQ R A+ L+DV N + TM N+LWYGPDR+KYL
Sbjct: 1 MASTIMAAT--SRVVAAKTPFLGQGRAANASPLRDVAAAANGRITMSNDLWYGPDRLKYL 58
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL
Sbjct: 59 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 118
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+KW+RV FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RIN
Sbjct: 119 QKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRIN 178
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF FFVQAIVTGK
Sbjct: 179 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFRFFVQAIVTGK 238
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
G LENLLDH++NPVANNAWVYATKF PGS
Sbjct: 239 GSLENLLDHIDNPVANNAWVYATKFAPGS 267
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/268 (85%), Positives = 239/268 (89%), Gaps = 2/268 (0%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MAS + A T S TPFLG R + L+D+ + TM ELWYGPDRVKYLG
Sbjct: 1 MASTIMAPT--SRVLAAKTPFLGHPRPSNAPLRDIAAAATGRITMSKELWYGPDRVKYLG 58
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE
Sbjct: 59 PFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 118
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
KW+RVDFKEPVWFKAGAQIFS+GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG+RING
Sbjct: 119 KWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRING 178
Query: 181 LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
LPGVG+GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 LPGVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 241 PLENLLDHLENPVANNAWVYATKFVPGS 268
PLENLLDHL +PVANNAWVYATKF PGS
Sbjct: 239 PLENLLDHLADPVANNAWVYATKFTPGS 266
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/260 (88%), Positives = 244/260 (93%), Gaps = 2/260 (0%)
Query: 11 SSSTSLRATPFL-GQSRTTA-NALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPS 68
+++ S A+PFL GQSR +A + L++V +GN K TMGNELWYGPDRVKYLGPFSAQTPS
Sbjct: 2 AAAASTIASPFLVGQSRVSAASQLRNVASVGNGKLTMGNELWYGPDRVKYLGPFSAQTPS 61
Query: 69 YLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFK 128
YLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL+KW+ V+FK
Sbjct: 62 YLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVNVNFK 121
Query: 129 EPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGN 188
EPVWFKAGAQIFS+GGLDYLGNPNLVHAQSILAVLGFQV+LMG VEGFRINGL GVG GN
Sbjct: 122 EPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQVLLMGAVEGFRINGLDGVGNGN 181
Query: 189 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 248
DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN LDH
Sbjct: 182 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENWLDH 241
Query: 249 LENPVANNAWVYATKFVPGS 268
L+NPVANNAWVYATKFVPGS
Sbjct: 242 LDNPVANNAWVYATKFVPGS 261
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/274 (85%), Positives = 245/274 (89%), Gaps = 8/274 (2%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTA-----NALKDVVPMG-NAKYTMGNELWYGPD 54
MAS + AAT S TPFLGQ R A + L+DV + TMGN+LWYGPD
Sbjct: 1 MASTIMAAT--SRIVAAKTPFLGQGRAAAAAANASPLRDVAAAAAGGRITMGNDLWYGPD 58
Query: 55 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCI 114
RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCI
Sbjct: 59 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCI 118
Query: 115 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
TPEVLEKW+RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE
Sbjct: 119 TPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVE 178
Query: 175 GFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
GFRINGL GVGEGN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 179 GFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 238
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
IVTGKGPLENLLDHL++PVANNAWVYATKF PGS
Sbjct: 239 IVTGKGPLENLLDHLDDPVANNAWVYATKFAPGS 272
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/268 (85%), Positives = 239/268 (89%), Gaps = 2/268 (0%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MAS + A T S TPFLG R + ++D+ + TM ELWYGPDRVKYLG
Sbjct: 1 MASTIMAPT--SRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSKELWYGPDRVKYLG 58
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE
Sbjct: 59 PFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 118
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
KW+RVDFKEPVWFKAGAQIFS+GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG+RING
Sbjct: 119 KWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRING 178
Query: 181 LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
LPGVG+GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 LPGVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 241 PLENLLDHLENPVANNAWVYATKFVPGS 268
PLENLLDHL +PVANNAWVYATKF PGS
Sbjct: 239 PLENLLDHLADPVANNAWVYATKFTPGS 266
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/231 (97%), Positives = 229/231 (99%)
Query: 38 MGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRA 97
MG KYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRA
Sbjct: 1 MGTGKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRA 60
Query: 98 LEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQ 157
LEVIHGRWAMLGALGCITPEVLEKWLRVDFKEP+WFKAGAQIFSEGGLDYLGNPNLVHAQ
Sbjct: 61 LEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQ 120
Query: 158 SILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEI 217
SILAVLGFQVVLMGLVEGFRINGLPGVG+GN+LYPGGQYFDPLGLADDPVTFAELKVKEI
Sbjct: 121 SILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEI 180
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL+NPVANNAWVYATKFVPGS
Sbjct: 181 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 231
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/269 (84%), Positives = 244/269 (90%), Gaps = 5/269 (1%)
Query: 2 ASIMAAATASSSTSLRATPFL-GQSRT-TANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
++IMAAA S + TPFL GQ R +A+ L+D+ N + TMGN+LWYGPDRVKYL
Sbjct: 3 STIMAAA---SRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+ PEVL
Sbjct: 60 GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+KW+ V+FKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRIN
Sbjct: 120 QKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN 179
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GL GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 180 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENL DHL++PVANNAWV+ATKF PGS
Sbjct: 240 GPLENLFDHLDDPVANNAWVFATKFAPGS 268
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/224 (97%), Positives = 223/224 (99%)
Query: 45 MGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGR 104
MGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGR
Sbjct: 1 MGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGR 60
Query: 105 WAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG 164
WAMLGALGCITPEVLEKW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG
Sbjct: 61 WAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG 120
Query: 165 FQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
FQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAM
Sbjct: 121 FQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAM 180
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FSMFGFFVQAIVTGKGPLENLLDHL+NPVANNAWVYATKFVPGS
Sbjct: 181 FSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 224
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/269 (82%), Positives = 241/269 (89%), Gaps = 4/269 (1%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMG-NAKYTMGNELWYGPDRVKYL 59
++++MA A+ + + TPFLG A+ L+DV N + +M NELWYGPDRVKYL
Sbjct: 2 VSTLMAPASRAVAGK---TPFLGARPAVASPLRDVAAAASNGRISMSNELWYGPDRVKYL 58
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYL+GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+ PEVL
Sbjct: 59 GPFSAQTPSYLSGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVL 118
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+KW+ V+FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG QV+LMGLVEGFRIN
Sbjct: 119 QKWVGVEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGSQVLLMGLVEGFRIN 178
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GL GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENL DHL++PVANNAWV+ATKF PGS
Sbjct: 239 GPLENLFDHLDDPVANNAWVFATKFAPGS 267
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/266 (84%), Positives = 234/266 (87%), Gaps = 23/266 (8%)
Query: 4 IMAAATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
++ AATASSST LR TPFLGQ+R +N L+DVVPMG KYTMGNELWYGPDRVKYLGPF
Sbjct: 1 MLMAATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGPF 60
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
SAQTP AFARNRALEVIHGRWAMLGALGCITPEVLEKW
Sbjct: 61 SAQTPF----------------------AFARNRALEVIHGRWAMLGALGCITPEVLEKW 98
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
LRVDFKEP+WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP
Sbjct: 99 LRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 158
Query: 183 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
GVG+GN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 159 GVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 218
Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
ENLLDHL+NPVANNAWVYATKFVPGS
Sbjct: 219 ENLLDHLDNPVANNAWVYATKFVPGS 244
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/269 (80%), Positives = 228/269 (84%), Gaps = 29/269 (10%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
M + + AATASSST LR T FLGQ+R + AN L++VVPMG K+TMGNELWYGPDRVKYL
Sbjct: 1 MVATVMAATASSSTGLRPTQFLGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYL 60
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA GCITPEVL
Sbjct: 61 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVL 120
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
EKW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG+RIN
Sbjct: 121 EKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRIN 180
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
GLPG LKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GLPG----------------------------LKVKEIKNGRLAMFSMFGFFVQAIVTGK 212
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENLLDHL+NPVANNAW YATKFVPGS
Sbjct: 213 GPLENLLDHLDNPVANNAWAYATKFVPGS 241
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/221 (93%), Positives = 216/221 (97%)
Query: 48 ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAM 107
+LWYGPDRVKYLGPFS QTPSYLTGEFPG+YGWDTAGLSADPEAFA+NRALEVIHGRWAM
Sbjct: 1 DLWYGPDRVKYLGPFSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAM 60
Query: 108 LGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV 167
LGA GCITPEVL+KW+RVDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV
Sbjct: 61 LGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQV 120
Query: 168 VLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
+LMGLVEG RINGL GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM
Sbjct: 121 ILMGLVEGLRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 180
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGPLENLLDHL+NPVANNAW +ATKFVPG+
Sbjct: 181 FGFFVQAIVTGKGPLENLLDHLDNPVANNAWAFATKFVPGA 221
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/263 (81%), Positives = 225/263 (85%), Gaps = 29/263 (11%)
Query: 7 AATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQ 65
AATASSST LR T F+GQ+R + AN L++VVPMG K+TMGNELWYGPDRVKYLGPFSAQ
Sbjct: 2 AATASSSTGLRPTQFVGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGPFSAQ 61
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA GCITPEVLEKW++V
Sbjct: 62 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKV 121
Query: 126 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG+RINGLPG
Sbjct: 122 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPG-- 179
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 180 --------------------------LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 213
Query: 246 LDHLENPVANNAWVYATKFVPGS 268
LDHL+NPVANNAW YATKFVPGS
Sbjct: 214 LDHLDNPVANNAWAYATKFVPGS 236
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/265 (79%), Positives = 232/265 (87%), Gaps = 3/265 (1%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTA-NALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
MA+ +SS+ T FLGQ+++++ N L+DVV +G+ KY MGN LWYGPDRVKYLGPFS
Sbjct: 1 MASTFTNSSSVFCPTTFLGQTKSSSFNPLRDVVSLGSHKYNMGNYLWYGPDRVKYLGPFS 60
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE-AFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
QTPSY TGEFPGDYGWDTAGLSADPE AFA+N ALEVI+GRWAMLGA GCITPEVL+KW
Sbjct: 61 VQTPSYPTGEFPGDYGWDTAGLSADPEKAFAKNIALEVIYGRWAMLGAFGCITPEVLQKW 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
+RVDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRIN
Sbjct: 121 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINRFD 180
Query: 183 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
GVGEGNDLYPGG+YFD L L DD VTF ELKVKEIKNG LAMFSMFGFFVQAIVTGK PL
Sbjct: 181 GVGEGNDLYPGGKYFDLLSLVDDQVTFVELKVKEIKNGMLAMFSMFGFFVQAIVTGKDPL 240
Query: 243 ENLLDHLENPVAN-NAWVYATKFVP 266
E+LLDHL+N VAN NAW + TKFVP
Sbjct: 241 ESLLDHLDNFVANINAWAFTTKFVP 265
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/248 (81%), Positives = 218/248 (87%), Gaps = 2/248 (0%)
Query: 21 FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGW 80
FL S + NAL+D AK +M +LWYGPDRVK+LGPFSAQTPSYL GEFPGDYGW
Sbjct: 18 FLRGSGSRKNALRDRSVQCQAKVSM--DLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGW 75
Query: 81 DTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
DTAGLSADPEAFARNRALE+IHGRWAMLGALGC+ PEVL KW+ V+FKE VWFKAG+QIF
Sbjct: 76 DTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIF 135
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
S+GGLDYLGNPNLVHAQSILA+ QV+LMGLVEG+RINGLP VGEG DLYPGGQYFDPL
Sbjct: 136 SDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYRINGLPDVGEGGDLYPGGQYFDPL 195
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVY 260
G ADDP T AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL+NPV NNAW Y
Sbjct: 196 GFADDPETLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDNPVVNNAWAY 255
Query: 261 ATKFVPGS 268
AT+FVPGS
Sbjct: 256 ATRFVPGS 263
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/248 (81%), Positives = 217/248 (87%), Gaps = 2/248 (0%)
Query: 21 FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGW 80
FL S + NAL+ AK +M +LWYGPDRVK+LGPFSAQTPSYL GEFPGDYGW
Sbjct: 18 FLRGSGSRKNALRGRSVQCQAKVSM--DLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGW 75
Query: 81 DTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
DTAGLSADPEAFARNRALE+IHGRWAMLGALGC+ PEVL KW+ V+FKE VWFKAG+QIF
Sbjct: 76 DTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIF 135
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
S+GGLDYLGNPNLVHAQSILA+ QV+LMGLVEG+RINGLP VGEG DLYPGGQYFDPL
Sbjct: 136 SDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYRINGLPDVGEGGDLYPGGQYFDPL 195
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVY 260
G ADDP T AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL+NPV NNAW Y
Sbjct: 196 GFADDPETLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDNPVVNNAWAY 255
Query: 261 ATKFVPGS 268
AT+FVPGS
Sbjct: 256 ATRFVPGS 263
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/199 (96%), Positives = 198/199 (99%)
Query: 70 LTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKE 129
LTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVLEKW++VDFKE
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 130 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND 189
PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGN+
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNN 120
Query: 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL
Sbjct: 121 LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 180
Query: 250 ENPVANNAWVYATKFVPGS 268
+NPVANNAWVYATKFVPG+
Sbjct: 181 DNPVANNAWVYATKFVPGA 199
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/246 (77%), Positives = 206/246 (83%), Gaps = 6/246 (2%)
Query: 29 ANALKDVVPMGNAKYTM------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDT 82
AN L V A+ M +WYGPDR +LGPFS TPSYL GEFPGDYGWDT
Sbjct: 21 ANELAQKVGSNQARVVMRGSKSSSGSMWYGPDRPLFLGPFSGNTPSYLKGEFPGDYGWDT 80
Query: 83 AGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSE 142
AGLSADPE+FARNRALE+IHGRWAMLGALGCITPE+L+K+ RV KEPVWFKAGAQIFS+
Sbjct: 81 AGLSADPESFARNRALELIHGRWAMLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSD 140
Query: 143 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGL 202
GGLDYLGNPNL+HAQSILAV QVVLMG VE +R NGLPGVGEG DLYPGG+YFDPLGL
Sbjct: 141 GGLDYLGNPNLIHAQSILAVWAVQVVLMGAVEAYRTNGLPGVGEGGDLYPGGKYFDPLGL 200
Query: 203 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYAT 262
ADDP T AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL NPV+NNAW +AT
Sbjct: 201 ADDPETLAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLANPVSNNAWAFAT 260
Query: 263 KFVPGS 268
F PG+
Sbjct: 261 NFTPGN 266
>gi|149941244|emb|CAO02554.1| putative LHCII type III chlorophyll a/b binding protein [Vigna
unguiculata]
Length = 211
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/211 (84%), Positives = 189/211 (89%), Gaps = 1/211 (0%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MA+ + AAT+ S T L+ TPFLGQ + AN L+D V MG KYTM N+LWYGPDRVKYL
Sbjct: 1 MAATLMAATSGSGTVLKPTPFLGQGKGANANPLRDAVSMGTGKYTMSNDLWYGPDRVKYL 60
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWA+LGALGCITPEVL
Sbjct: 61 GPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWALLGALGCITPEVL 120
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL EGFRIN
Sbjct: 121 GKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLAEGFRIN 180
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFA 210
GL GVGEGN+LYP GQYFDPLGLADDP TFA
Sbjct: 181 GLDGVGEGNNLYPXGQYFDPLGLADDPTTFA 211
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 193/272 (70%), Positives = 208/272 (76%), Gaps = 14/272 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A S+SL L R N L V A+ TM +WYGPDR K
Sbjct: 1 MATASAIQSSSLAGQTLL---RPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R
Sbjct: 118 LLAK-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYR 176
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 177 VGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 234
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +P ANNAW YAT FVPG
Sbjct: 235 TGKGPIENLFDHLADPTANNAWAYATNFVPGK 266
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 193/272 (70%), Positives = 208/272 (76%), Gaps = 14/272 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A S+SL L R N L V A+ TM +WYGPDR K
Sbjct: 1 MATASAIQSSSLAGQTLL---RPHQNELVKKVGASQARITMRRTVRIAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R
Sbjct: 118 LLAK-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYR 176
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 177 VGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 234
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +P ANNAW YAT FVPG
Sbjct: 235 TGKGPIENLFDHLADPTANNAWAYATNFVPGK 266
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 193/272 (70%), Positives = 208/272 (76%), Gaps = 14/272 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A S+SL L R N L V A+ TM +WYGPDR K
Sbjct: 1 MATASAIQSSSLAGQTLL---RPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R
Sbjct: 118 LLAK-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYR 176
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 177 VGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 234
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +P ANNAW YAT FVPG
Sbjct: 235 TGKGPIENLFDHLADPTANNAWAYATNFVPGK 266
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 362 bits (930), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 191/272 (70%), Positives = 207/272 (76%), Gaps = 14/272 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A +SL L R N L V A+ TM +WYGPDR K
Sbjct: 1 MATASAIQISSLAGQTLL---RPQQNELVSKVGASQARITMRRTVRSAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ FQVVLMGL+EG+R
Sbjct: 118 LLAK-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYR 176
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 177 VGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 234
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +P NNAW YAT FVPG
Sbjct: 235 TGKGPIENLFDHLADPANNNAWAYATNFVPGK 266
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 362 bits (929), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 192/272 (70%), Positives = 207/272 (76%), Gaps = 14/272 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A S+SL L R N L V A+ TM +WYGPDR K
Sbjct: 1 MATASAIQSSSLAGQTLL---RPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QV LMGL+EG+R
Sbjct: 118 LLAK-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVGLMGLIEGYR 176
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 177 VGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 234
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +P ANNAW YAT FVPG
Sbjct: 235 TGKGPIENLFDHLADPTANNAWAYATNFVPGK 266
>gi|515616|emb|CAA43802.1| LHC II Type III chlorophyll a /b binding protein [Brassica napus]
Length = 202
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 174/202 (86%), Positives = 188/202 (93%), Gaps = 1/202 (0%)
Query: 5 MAAATASSSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
MA+ SSS+ L TPFLGQ++ +T N L+D V +G+ KYTMGN+LWYGPDRVKYLGPFS
Sbjct: 1 MASTFMSSSSVLTPTPFLGQTKGSTFNPLRDAVSLGSPKYTMGNDLWYGPDRVKYLGPFS 60
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
QTPSYLTGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVL+KW+
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWV 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
RVDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL G
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 180
Query: 184 VGEGNDLYPGGQYFDPLGLADD 205
VGEGNDLYPGGQYFDPLGLADD
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADD 202
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 193/272 (70%), Positives = 208/272 (76%), Gaps = 14/272 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A S+SL L R N L V A+ TM +WYGPDR K
Sbjct: 1 MATASAIQSSSLAGQTLL---RPQQNELVKKVGTAQARITMRRTVRSAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS TPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R
Sbjct: 118 LLAK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYR 176
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 177 VGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 234
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +PVANNAW YAT FVPG
Sbjct: 235 TGKGPIENLYDHLADPVANNAWAYATNFVPGK 266
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/266 (69%), Positives = 212/266 (79%), Gaps = 13/266 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + ++ V G+++ TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQHSAFAGQTVLKQQNELVRKVGSFGSSRTTMRRTVKSTPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+ QVVLMGL+EG+RI G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRIGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDSLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
+ENL DHL +PVANNAW YAT FVPG
Sbjct: 239 VENLYDHLADPVANNAWAYATNFVPG 264
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 193/272 (70%), Positives = 209/272 (76%), Gaps = 15/272 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-------GNELWYGPDRVK 57
MAAATA ST+L L N L V A+ TM + +WYG DR K
Sbjct: 1 MAAATAMHSTTLAGQSLL----KPVNELSRKVGSSEARVTMRRTVKSTSDSIWYGADRPK 56
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS +TPSYLTGEF GDYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+TPE
Sbjct: 57 YLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPE 116
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L K V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R
Sbjct: 117 LLAK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYR 175
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GE D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 176 VAGGP-LGEITDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIV 233
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGPLENL DHL +PVANNAW YAT FVPG+
Sbjct: 234 TGKGPLENLNDHLADPVANNAWAYATNFVPGN 265
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 187/262 (71%), Positives = 207/262 (79%), Gaps = 7/262 (2%)
Query: 11 SSSTSLRATPFLGQS---RTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTP 67
++S + T FLGQ+ R D + M ++ +WYGPDR KYLGPFS QTP
Sbjct: 2 AASALHQTTSFLGQALVARAAGVDAGDRITMRRTVKSVPQSIWYGPDRPKYLGPFSEQTP 61
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127
SYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K V F
Sbjct: 62 SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAK-NGVKF 120
Query: 128 KEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEG 187
E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P +GEG
Sbjct: 121 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP-LGEG 179
Query: 188 ND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 246
D +YPGG FDPLGLADDP T AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL
Sbjct: 180 LDKVYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLF 238
Query: 247 DHLENPVANNAWVYATKFVPGS 268
DH+ +PVANNAW YAT FVPG+
Sbjct: 239 DHVADPVANNAWAYATNFVPGN 260
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 183/267 (68%), Positives = 213/267 (79%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + + ++ V +G A++TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFAGQTALKQSNELVRKVGALGGARFTMRRTVKSAPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 239 IENLFDHVADPVANNAWAYATNFVPGK 265
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 187/262 (71%), Positives = 208/262 (79%), Gaps = 7/262 (2%)
Query: 11 SSSTSLRATPFLGQSRTTANALKDV---VPMGNAKYTMGNELWYGPDRVKYLGPFSAQTP 67
++S + T FLGQ+ + A D + M ++ +WYGPDR KYLGPFS QTP
Sbjct: 2 AASALHQTTSFLGQALVSRAAGVDAGGRITMRRTVKSVPQSIWYGPDRPKYLGPFSEQTP 61
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127
SYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K V F
Sbjct: 62 SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAK-NGVKF 120
Query: 128 KEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEG 187
E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P +GEG
Sbjct: 121 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP-LGEG 179
Query: 188 ND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 246
D +YPGG FDPLGLADDP T AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL
Sbjct: 180 LDKVYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLF 238
Query: 247 DHLENPVANNAWVYATKFVPGS 268
DH+ +PVANNAW YAT FVPG+
Sbjct: 239 DHVADPVANNAWAYATNFVPGN 260
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 183/266 (68%), Positives = 212/266 (79%), Gaps = 13/266 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + + ++ V G+ + TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFAGQTALKQSNELVRKVGSSGDGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAI+TGKGP
Sbjct: 181 -LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIITGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
+ENLLDHL +PVANNAW YAT FVPG
Sbjct: 239 IENLLDHLADPVANNAWAYATNFVPG 264
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 186/267 (69%), Positives = 211/267 (79%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + ++ V +G + TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQRSAFAGQTALKQPNELVRKVGGLGGGRITMRRTVKSTPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDAIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL+DHL +PVANNAW YAT FVPG
Sbjct: 239 IENLVDHLADPVANNAWAYATNFVPGK 265
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 360 bits (924), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 187/266 (70%), Positives = 208/266 (78%), Gaps = 12/266 (4%)
Query: 12 SSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPFS 63
++++L+ + F GQ+ N L V ++ M +WYGPDR KYLGPFS
Sbjct: 2 ATSALQQSAFAGQTALKQQNELVRRVGSSRGRFFMRRTTASTPKSIWYGPDRPKYLGPFS 61
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIHGRWAMLGALGC+ PE+L K
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPEILAK-N 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP- 179
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 LGEGLDAIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
ENL DHL +PVANNAW YAT FVPG
Sbjct: 239 ENLYDHLADPVANNAWAYATNFVPGK 264
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 190/272 (69%), Positives = 206/272 (75%), Gaps = 14/272 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A +SL L R N L V A+ TM +WYGPDR K
Sbjct: 1 MATASAIQISSLAGQTLL---RPQQNELVSKVGASQARITMRRTVRSAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS QTPSYLTGEFPGDY WDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ FQVVLMGL+EG+R
Sbjct: 118 LLAK-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYR 176
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 177 VGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 234
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +P NNAW YAT FVPG
Sbjct: 235 TGKGPIENLFDHLADPANNNAWAYATNFVPGK 266
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 360 bits (923), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 184/267 (68%), Positives = 211/267 (79%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + + ++ V +G + TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFAGQTALKPSNELVRKVGSVGGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILAK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 239 IENLFDHVADPVANNAWAYATNFVPGK 265
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 189/271 (69%), Positives = 208/271 (76%), Gaps = 15/271 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALHQTTS-----FLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+
Sbjct: 56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEI 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L K V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+
Sbjct: 116 LSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRV 174
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GEG D +YPGG FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 175 GGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVT 232
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 233 GKGPIENLFDHVADPVANNAWAYATNFVPGK 263
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 358 bits (920), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 186/251 (74%), Positives = 200/251 (79%), Gaps = 11/251 (4%)
Query: 26 RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDY 78
R N L V M A+ TM +WYGPDR KYLGPFS QTPSYLTGEFPGDY
Sbjct: 19 RPQHNELVRKVGMSQARITMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDY 78
Query: 79 GWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQ 138
GWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQ
Sbjct: 79 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAK-TGVKFGEAVWFKAGAQ 137
Query: 139 IFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYF 197
IFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R+ G P +GEG D LYPGG F
Sbjct: 138 IFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGP-LGEGLDPLYPGGA-F 195
Query: 198 DPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNA 257
DPLGLADDP +FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +P ANNA
Sbjct: 196 DPLGLADDPESFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTANNA 255
Query: 258 WVYATKFVPGS 268
W YAT FVPG
Sbjct: 256 WAYATNFVPGK 266
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 188/271 (69%), Positives = 209/271 (77%), Gaps = 15/271 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALHQTTS-----FLGTAPRRDDVVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LE+IH RWAMLGALGC+ PE+
Sbjct: 56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEI 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L K V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+
Sbjct: 116 LSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRV 174
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GEG D +YPGG FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 175 GGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVT 232
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 233 GKGPIENLFDHVTDPVANNAWSYATNFVPGK 263
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 184/267 (68%), Positives = 211/267 (79%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + + ++ V G + TM +WYGPDR K+LGPF
Sbjct: 2 AASAIQQSAFAGQTALKQPNDLVRKVGSFGGGRVTMRRTVKSAPQSIWYGPDRPKFLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENLLDHL +PVANNAW YAT FVPG
Sbjct: 239 VENLLDHLADPVANNAWAYATNFVPGK 265
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 183/267 (68%), Positives = 210/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPF 62
++++++ + F GQ+ + ++ + +G + TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQRSAFAGQTALKPQNELVRKIGSLGGGRITMRRTVRSAPESIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAR- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDKIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DHL +PVANNAW YAT FVPG
Sbjct: 239 IENLYDHLADPVANNAWAYATNFVPGK 265
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 184/267 (68%), Positives = 209/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++ +++ + F+GQ+ ++ ++ V G + TM +WYG DR KYLGPF
Sbjct: 2 ATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 239 IENLSDHINDPVANNAWAYATNFVPGK 265
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 189/270 (70%), Positives = 209/270 (77%), Gaps = 13/270 (4%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----GNELWYGPDRVKYL 59
MAA TA+ ST+L L + N L V A+ TM + +WYG DR KYL
Sbjct: 1 MAACTATHSTALAGQTAL----KSINELSRKVGNVQARVTMRKASSSDSIWYGADRPKYL 56
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GP S +TPSYLTGEF GDYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+TPE+L
Sbjct: 57 GPLSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELL 116
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
K V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 117 AK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVA 175
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 176 GGP-LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 233
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGPLENL DHL +PVANNAW YAT FVPG+
Sbjct: 234 KGPLENLSDHLADPVANNAWAYATNFVPGN 263
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 184/267 (68%), Positives = 206/267 (77%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS---------RTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
++++++ + F GQ+ R T A K M + +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFTGQTALKQLNEFVRKTGGAGKGRTNMRRTVKSAPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC PE+LEK
Sbjct: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
++NL DH+ +PVANNAW YAT FVPG
Sbjct: 239 IQNLYDHVADPVANNAWAYATNFVPGQ 265
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 177/222 (79%), Positives = 191/222 (86%), Gaps = 4/222 (1%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGC+ PEVL K V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ Q
Sbjct: 106 MLGALGCVFPEVLSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQ 164
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
VVLMGL+EG+R+ G P +GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMF
Sbjct: 165 VVLMGLIEGYRVGGGP-LGEGLDKIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMF 222
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
SMFGFFVQAIVTGKGP+ENL DHL +PVANNAW YAT FVPG
Sbjct: 223 SMFGFFVQAIVTGKGPIENLFDHLSDPVANNAWAYATNFVPG 264
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 182/267 (68%), Positives = 210/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F+GQ+ ++ ++ + G + TM +WYG DR KYLGPF
Sbjct: 2 ATSAIQQSAFVGQTVAKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMGL+EG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGLIEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL D + +PVANNAW +AT FVPG
Sbjct: 239 IENLFDQINDPVANNAWAFATNFVPGK 265
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 185/265 (69%), Positives = 204/265 (76%), Gaps = 4/265 (1%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
MAA+ +TS + + A + M + +WYGPDR KYLGPFS
Sbjct: 1 MAASALHQTTSFLGQALVSRPAAAAADAGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 60
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 61 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAK-NG 119
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P +
Sbjct: 120 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP-L 178
Query: 185 GEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
GEG D +YPGG FDPLGLADDP T AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 179 GEGLDKVYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 237
Query: 244 NLLDHLENPVANNAWVYATKFVPGS 268
NL DH+ +PVANNAW YAT FVPG+
Sbjct: 238 NLFDHVADPVANNAWAYATNFVPGN 262
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 183/267 (68%), Positives = 206/267 (77%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS---------RTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
++++++ + F GQ+ R T A K M + +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFAGQTALKQLNELVRKTGGAGKGRTTMRRTVKSAPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC PE+LEK
Sbjct: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
++NL DH+ +PVANNAW YAT FVPG
Sbjct: 239 IQNLYDHVADPVANNAWAYATNFVPGQ 265
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 188/271 (69%), Positives = 207/271 (76%), Gaps = 15/271 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALHQTTS-----FLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+
Sbjct: 56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEI 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L K V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+
Sbjct: 116 LSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRV 174
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GEG D +YP G FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 175 GGGP-LGEGLDKVYPSGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVT 232
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 233 GKGPIENLFDHVADPVANNAWAYATNFVPGK 263
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 183/266 (68%), Positives = 206/266 (77%), Gaps = 13/266 (4%)
Query: 12 SSTSLRATPFLGQS---------RTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
++++++++ F GQ+ R N M + +WYG DR KYLGPF
Sbjct: 2 ATSAIQSSAFAGQTSLKQQNELVRKVGNFSGGRATMRRTVKSTPQSIWYGADRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMGL+EG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDKIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
+ENL DHL +PVANNAW YAT FVPG
Sbjct: 239 VENLFDHLADPVANNAWAYATNFVPG 264
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 183/266 (68%), Positives = 209/266 (78%), Gaps = 12/266 (4%)
Query: 12 SSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPFS 63
++++++ + F+GQ+ N L V +++M +WYGPDR KYLGPFS
Sbjct: 2 ATSTIQQSAFVGQTLLKQQNELVRKVGGNGGRFSMRRTVKSAPQSIWYGPDRPKYLGPFS 61
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-N 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAG+QIF EGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R+ G P
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGP- 179
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 LGEGLDKIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 238
Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
ENL DHL +PVANNAW YAT FVPG
Sbjct: 239 ENLSDHLADPVANNAWAYATNFVPGK 264
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 173/181 (95%), Positives = 178/181 (98%)
Query: 77 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAG 136
DYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVL+KWL V FKEPVWFKAG
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 137 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQY 196
AQIF+EGGLDYLGNPNLVHAQSILAVLGFQVV+MGLVEGFRINGL GVGEGNDLYPGGQY
Sbjct: 61 AQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRINGLDGVGEGNDLYPGGQY 120
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL+NPVANN
Sbjct: 121 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 180
Query: 257 A 257
A
Sbjct: 181 A 181
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 357 bits (915), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 183/267 (68%), Positives = 210/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F+GQ+ ++ ++ V G ++ TM +WYG DR KYLGPF
Sbjct: 2 ATSAIQQSAFVGQAVGKSQNEFVRKVGSCGESRITMRRTVKSAPQSIWYGEDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSY TGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DH+ +PVANNAW YAT FVP S
Sbjct: 239 IENLSDHINDPVANNAWAYATNFVPES 265
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 357 bits (915), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 183/267 (68%), Positives = 206/267 (77%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS---------RTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
++++++ + F GQ+ R T A K M + +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFAGQTALKQLNELVRKTGGAGKGRTNMRRTVKSAPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC PE+LEK
Sbjct: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
++NL DH+ +PVANNAW YAT FVPG
Sbjct: 239 IQNLYDHVADPVANNAWAYATNFVPGQ 265
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 356 bits (913), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 178/245 (72%), Positives = 198/245 (80%), Gaps = 4/245 (1%)
Query: 25 SRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAG 84
SR N + M + + + +WYGPDR K+LGPFS QTPSYLTGEFPGDYGWDTAG
Sbjct: 26 SRKVGNLGEARTVMRRTRASTPDSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAG 85
Query: 85 LSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGG 144
LSADPE FA+NR LEVIH RWAMLGALGC+TPE+L K + F E VWFKAG+QIF EGG
Sbjct: 86 LSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAK-NGIKFGEAVWFKAGSQIFKEGG 144
Query: 145 LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLA 203
LDYLGNPNLVHAQSILA+ QV+LMG VEG+R+ G P +GEG D +YPGG FDPLGLA
Sbjct: 145 LDYLGNPNLVHAQSILAIWASQVILMGAVEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLA 202
Query: 204 DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATK 263
DDP TFAELKVKE+KNGRLAMFSMFGFF QAIVTGKGP+ENLLDHL+NP NNAW YAT
Sbjct: 203 DDPDTFAELKVKELKNGRLAMFSMFGFFTQAIVTGKGPIENLLDHLDNPTVNNAWAYATN 262
Query: 264 FVPGS 268
F PGS
Sbjct: 263 FTPGS 267
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 356 bits (913), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 182/267 (68%), Positives = 208/267 (77%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
+++++ + F GQ+ ++ ++ + + TM +WYG DR KYLGPF
Sbjct: 2 ATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILAV QVVLMGL+EG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 239 IENLFDHVADPVANNAWAYATNFVPGK 265
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 356 bits (913), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 183/267 (68%), Positives = 210/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + + ++ V G + TM +WYGPDR K+LGPF
Sbjct: 2 AASAIQQSAFAGQTALKQPNDLVRKVGSFGGGRVTMRRTVKSAPQSIWYGPDRPKFLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLA FSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLATFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENLLDHL +PVANNAW YAT FVPG
Sbjct: 239 VENLLDHLADPVANNAWAYATNFVPGK 265
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 355 bits (912), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 188/270 (69%), Positives = 207/270 (76%), Gaps = 13/270 (4%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----GNELWYGPDRVKYL 59
MAAATA ST+L L N L V A+ +M + +WYG DR K+L
Sbjct: 1 MAAATAMHSTTLAGQSLL----KPVNELSRKVGTSEARVSMRKSSGSDSIWYGADRPKFL 56
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS +TPSYL GEF GDYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+TPE+L
Sbjct: 57 GPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELL 116
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
K V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 117 AK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA 175
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 176 GGP-LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 233
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGPLENL DHL +PVANNAW YAT F PG+
Sbjct: 234 KGPLENLNDHLADPVANNAWAYATNFTPGN 263
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 355 bits (912), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 185/247 (74%), Positives = 198/247 (80%), Gaps = 11/247 (4%)
Query: 30 NALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDT 82
N L V A+ TM +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDT
Sbjct: 3 NELVKKVGASQARITMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT 62
Query: 83 AGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSE 142
AGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSE
Sbjct: 63 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAK-NGVKFGEAVWFKAGAQIFSE 121
Query: 143 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLG 201
GGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R+ G P +GEG D LYPGG FDPLG
Sbjct: 122 GGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGP-LGEGLDPLYPGGA-FDPLG 179
Query: 202 LADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYA 261
LADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PVANNAW YA
Sbjct: 180 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYA 239
Query: 262 TKFVPGS 268
T FVPG
Sbjct: 240 TNFVPGK 246
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 182/267 (68%), Positives = 209/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPF 62
++++++ + F G++ + ++ G +++TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFTGKTGLKQGNEFIRKAGSFGQSRFTMRRTVKSAPESIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC PE+LEK
Sbjct: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
++NL DH+ +PVANNAW YAT FVPG
Sbjct: 239 VQNLYDHVADPVANNAWAYATNFVPGQ 265
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 178/221 (80%), Positives = 191/221 (86%), Gaps = 4/221 (1%)
Query: 49 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAML
Sbjct: 17 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 76
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ FQVV
Sbjct: 77 GALGCVFPELLAK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVV 135
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL+EG+R+ G P +GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSM
Sbjct: 136 LMGLIEGYRVGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSM 193
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP+ENL DHL +P ANNAW YAT FVPG
Sbjct: 194 FGFFVQAIVTGKGPIENLFDHLADPTANNAWAYATNFVPGK 234
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 185/268 (69%), Positives = 206/268 (76%), Gaps = 7/268 (2%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV---VPMGNAKYTMGNELWYGPDRVKYLGP 61
MAAATA ST+L L + + +V + M + +WYG DR KYLGP
Sbjct: 1 MAAATAMHSTALAGQSLLKPVNELSRKVGNVEARISMRKTASKSSDSIWYGADRPKYLGP 60
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
FS +TPSYL GEF GDYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+TPE+L K
Sbjct: 61 FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAK 120
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G
Sbjct: 121 -NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGG 179
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +G+ D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 P-LGDVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 241 PLENLLDHLENPVANNAWVYATKFVPGS 268
PLENL DHL +PVANNAW YAT F PG+
Sbjct: 238 PLENLNDHLADPVANNAWAYATNFTPGN 265
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 186/268 (69%), Positives = 209/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+S+ +L + F GQ+ + + ++ GN + TM + WYGPDRVKYLG
Sbjct: 2 AASTMALSSPSFAGQAVKLSPSTSEIT--GNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 189/274 (68%), Positives = 209/274 (76%), Gaps = 18/274 (6%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDR 55
MAAATA ST+L GQS N L V A+ +M + +WYG DR
Sbjct: 1 MAAATAMHSTTLA-----GQSLFRFNELSSKVGSSQARVSMRKTVSKSSGSDSIWYGADR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
K+LGPFS +TPSYL GEF GDYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+T
Sbjct: 56 PKWLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLT 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L K V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG
Sbjct: 116 PELLAK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +G+ D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 175 YRVAGGP-LGDVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
IVTGKGPLENL DHL +PVANNAW YAT F PG+
Sbjct: 233 IVTGKGPLENLNDHLADPVANNAWAYATNFTPGN 266
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 183/266 (68%), Positives = 211/266 (79%), Gaps = 12/266 (4%)
Query: 12 SSTSLRATPFLGQSR-TTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPFS 63
++++++++ F GQ+ + L V + + +++M +WYG DR K+LGPFS
Sbjct: 2 AASAIQSSAFAGQTALKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPFS 61
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCI PE+L K
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSK-N 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMGL+EG+R+ G P
Sbjct: 121 GVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP- 179
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
ENL DH+ +PVANNAW +AT FVPG
Sbjct: 239 ENLADHIADPVANNAWAFATNFVPGK 264
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 186/271 (68%), Positives = 208/271 (76%), Gaps = 15/271 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALHQTTS-----FLGTAPRRDDLVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LE+IH RWAMLGALGC+ PE+
Sbjct: 56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEI 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L K V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+
Sbjct: 116 LSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRV 174
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GEG D +YPGG FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 175 GGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVR 232
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 233 GKGPIENLFDHVTDPVANNAWAYATNFVPGK 263
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 209/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ ++ ++ + G + TM +WYG DR KYLGPF
Sbjct: 2 ATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DH+ +PVANNAW +AT FVPG
Sbjct: 239 IENLYDHVADPVANNAWAFATNFVPGK 265
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 184/267 (68%), Positives = 207/267 (77%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPF 62
++++++ + F GQ+ + ++ V G TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFAGQTALKPQNELVRKVGSFGGGHITMRRTVKSAPESIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+G G D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGWGLDKIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DHL +PVANNAW YAT FVPG
Sbjct: 239 IENLYDHLADPVANNAWAYATNFVPGK 265
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 189/270 (70%), Positives = 207/270 (76%), Gaps = 9/270 (3%)
Query: 5 MAAATASSSTSLRA----TPFLGQSRTTANALKDVVPMGNAKYTMGNE-LWYGPDRVKYL 59
MA ATA ST+L P SR N V + G++ +WYG DR K+L
Sbjct: 1 MAGATAMHSTALAGQGVLKPVNELSRKVGNVEARVTMRRTVSKSAGSDSIWYGADRPKFL 60
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS +TPSYLTGEF GDYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+TPE+L
Sbjct: 61 GPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELL 120
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
K V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 121 AK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 180 GGP-LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGPLENL DHL +PVANNAW YAT F PG+
Sbjct: 238 KGPLENLNDHLADPVANNAWAYATNFTPGN 267
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 209/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + + + + +G + +M +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DHL +PVANNAW YAT FVPG
Sbjct: 239 IENLFDHLADPVANNAWAYATNFVPGK 265
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 189/270 (70%), Positives = 207/270 (76%), Gaps = 9/270 (3%)
Query: 5 MAAATASSSTSLR----ATPFLGQSRTTANALKDVVPMGNAKYTMGNE-LWYGPDRVKYL 59
MAAATA ST+L P SR N V + G++ +WYG DR K+L
Sbjct: 1 MAAATAMHSTALAGQSLVKPVNELSRKVGNVEARVTMRRTVSKSAGSDSIWYGADRPKFL 60
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS +TPSYL GEF GDYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+TPE+L
Sbjct: 61 GPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELL 120
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
K V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 121 AK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 180 GGP-LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGPLENL DHL +PVANNAW YAT F PG+
Sbjct: 238 KGPLENLNDHLADPVANNAWAYATNFTPGN 267
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 209/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + L+ G ++TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC PE+LE+
Sbjct: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILER- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
++NL DH+ +PVANNAW +AT FVPG
Sbjct: 239 IQNLYDHVADPVANNAWAFATNFVPGQ 265
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 187/271 (69%), Positives = 206/271 (76%), Gaps = 15/271 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALQQTTS-----FLGTAPRRDELVRRVGDFGGRITMRRTVKSAPQSIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+
Sbjct: 56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEI 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L K V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+
Sbjct: 116 LSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRV 174
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GEG D +YPGG FDPLGLADDP TFAELKVKE+KN RLAMFSMFGFFVQAIVT
Sbjct: 175 GGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNSRLAMFSMFGFFVQAIVT 232
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGP+ENL DH+ +PV NNAW YAT FVPG
Sbjct: 233 GKGPIENLADHVADPVNNNAWAYATNFVPGK 263
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 189/270 (70%), Positives = 207/270 (76%), Gaps = 9/270 (3%)
Query: 5 MAAATASSSTSLRAT----PFLGQSRTTANALKDVVPMGNAKYTMGNE-LWYGPDRVKYL 59
MAAATA ST+L P SR N V + G++ +WYG DR K+L
Sbjct: 1 MAAATAMHSTALAGQSLFQPVNELSRKVGNVDSRVTMRRTVNKSAGSDSIWYGADRPKFL 60
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS +TPSYL GEF GDYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+TPE+L
Sbjct: 61 GPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELL 120
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
K V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 121 AK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 180 GGP-LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGPLENL DHL +PVANNAW YAT F PG+
Sbjct: 238 KGPLENLNDHLADPVANNAWAYATNFTPGN 267
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 178/223 (79%), Positives = 191/223 (85%), Gaps = 4/223 (1%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
+WYGPDR K+LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWA
Sbjct: 45 QSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWA 104
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGCI PE+L K V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ Q
Sbjct: 105 MLGALGCIFPELLSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWATQ 163
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
VVLMG +EG+R+ G P +GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMF
Sbjct: 164 VVLMGFIEGYRVGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMF 221
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
SMFGFFVQAIVTGKGPLENL DHL +PVANNAW YAT FVPG+
Sbjct: 222 SMFGFFVQAIVTGKGPLENLSDHLADPVANNAWSYATNFVPGN 264
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 209/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPF 62
++++++ + F G++ + ++ G +++TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFTGKTGLKQGNEFIRKAGSFGQSRFTMRRTVKSAPESIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC PE+LEK
Sbjct: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ +VVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATRVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
++NL DH+ +PVANNAW YAT FVPG
Sbjct: 239 VQNLYDHVADPVANNAWAYATNFVPGQ 265
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 210/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPF 62
++++++ + F G++ R ++ G A++TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFTGKTGLRQGNEFIRKAGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC PE+LEK
Sbjct: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIF+EGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPLGLADDP +FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
++NL DH+ +PVANNAW +AT FVPG
Sbjct: 239 IQNLYDHVADPVANNAWAFATNFVPGQ 265
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 178/223 (79%), Positives = 190/223 (85%), Gaps = 4/223 (1%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
+WYGPDR KYLGPFS QTPSYLTGEFPGDY WDTAGLSADPE FARNR LEVIH RWA
Sbjct: 34 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRWA 93
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ Q
Sbjct: 94 MLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 152
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
VVLMG VEG+R+ G P +GEG D +YPGG FDPLGLADDP TFAELKVKE+KNGRLAMF
Sbjct: 153 VVLMGFVEGYRVGGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMF 210
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
SMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 211 SMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 253
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 179/221 (80%), Positives = 190/221 (85%), Gaps = 4/221 (1%)
Query: 49 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAML
Sbjct: 26 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 85
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+ PEVL K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVV
Sbjct: 86 GALGCVFPEVLSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVV 144
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMG VEG+R+ G P +GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSM
Sbjct: 145 LMGFVEGYRVGGGP-LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAMFSM 202
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP+ENL DHL +PVANNAW YAT FVPG
Sbjct: 203 FGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 243
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 186/266 (69%), Positives = 203/266 (76%), Gaps = 5/266 (1%)
Query: 5 MAAATASSSTS-LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
MAA+ +TS L A P + + M + +WYGPDR KYLGPFS
Sbjct: 1 MAASALHQTTSFLGAAPRRDELVRRVGDFGGRITMRRTVKSAPQSIWYGPDRPKYLGPFS 60
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
QTPSYLTGEF GDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 61 EQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-N 119
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 120 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGP- 178
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+GEG D +YPGG FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 179 LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
ENL DH+ +PV NNAW YAT FVPG
Sbjct: 238 ENLFDHVADPVNNNAWAYATNFVPGK 263
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 188/271 (69%), Positives = 206/271 (76%), Gaps = 15/271 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALHQTTS-----FLGTAPRRDELVRHVGDFGGRITMRRTVKSAPQSIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR L VIH RWAMLGALGC+ PE+
Sbjct: 56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWAMLGALGCVFPEI 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L K V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+RI
Sbjct: 116 LSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRI 174
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GEG D +YPGG FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 175 GGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVT 232
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGP+ENL DH+ +PV NNAW YAT FVPG
Sbjct: 233 GKGPIENLFDHVADPVNNNAWAYATNFVPGK 263
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 185/268 (69%), Positives = 207/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLG 60
A+S+ +L + GQ+ + ++ GNAK+TM WYGPDRVKYLG
Sbjct: 2 AASAMALSSPTLAGQAVKLSPTAPEI--QGNAKFTMRKTASKSVSSGSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 188/271 (69%), Positives = 208/271 (76%), Gaps = 16/271 (5%)
Query: 10 ASSSTSLRATPFL-GQSRTTANALKDVVPMGNAKYTMGNEL-----------WYGPDRVK 57
A+SST ++P L GQ+ A + +++ + TM + WYGPDRVK
Sbjct: 2 ATSSTMALSSPSLAGQAVKLAPNVTELLAGDQGRVTMRKSVAKSKAVSSGSPWYGPDRVK 61
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 62 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 121
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QV+LMG VEG+R
Sbjct: 122 LLSR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVILMGAVEGYR 180
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
I G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 181 IAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 238
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPG 267
TGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 239 TGKGPLENLADHLADPVNNNAWAYATNFVPG 269
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 189/270 (70%), Positives = 210/270 (77%), Gaps = 14/270 (5%)
Query: 5 MAAAT-ASSSTSLRATPF----LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MAA+T A SST++ TP G+ R T ++ V G K WYGPDRVKYL
Sbjct: 1 MAASTMAISSTAMAGTPIKVGSFGEGRIT---MRKTV--GKPKVAASGSPWYGPDRVKYL 55
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 56 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 115
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI
Sbjct: 116 SR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA 174
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 175 GGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 232
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGPLENL DH+ +PV NNAW YAT FVPG+
Sbjct: 233 KGPLENLADHIADPVNNNAWAYATNFVPGN 262
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 187/268 (69%), Positives = 204/268 (76%), Gaps = 8/268 (2%)
Query: 5 MAAATASSSTSLRATPFLG----QSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MA+ T SS+ + +A P G S T + + K WYGPDRVKYLG
Sbjct: 1 MASMTLSSTFTSKAVPLNGITEFSSATCCGNGRVSMRKAAGKVADSGSPWYGPDRVKYLG 60
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 61 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G
Sbjct: 121 R-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG 179
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 180 GP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 237
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 238 GPLENLADHLADPVNNNAWAYATNFVPG 265
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 353 bits (905), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 184/270 (68%), Positives = 210/270 (77%), Gaps = 17/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKY 58
A+S+ +L ++ F+G++ + + ++ GN K TM WYGPDRVKY
Sbjct: 2 AASTMALSSSSFVGKAVKLSPSSSEIT--GNGKVTMRKTATKAKPVSSGSPWYGPDRVKY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 120 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 179 AGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWAYATNFVPG 266
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 353 bits (905), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 208/267 (77%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPF 62
++++++ + F G++ + ++ G +++TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFTGKTGLKQGNEFIRKAGSFGQSRFTMRRTVKSAPESIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC PE+LEK
Sbjct: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVT KGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTDKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
++NL DH+ +PVANNAW YAT FVPG
Sbjct: 239 VQNLYDHVADPVANNAWAYATNFVPGQ 265
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 353 bits (905), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 209/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + + ++ + +G + TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFAGQTALKQSNELIRKIGGLGGGRITMRRTVKSTPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+N LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAM SMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMTSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 239 VENLYDHVADPVANNAWAYATNFVPGK 265
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 185/268 (69%), Positives = 207/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLG 60
A+S+ +L + GQ+ + ++ GNAK+TM WYGPDRVKYLG
Sbjct: 2 AASTMALSSPTLAGQAVKLSPNAPEI--QGNAKFTMRKTASKSVSSGSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 185/269 (68%), Positives = 209/269 (77%), Gaps = 17/269 (6%)
Query: 11 SSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKYL 59
++ST+ ++PF G++ + + +V GN K TM WYGPDRVKYL
Sbjct: 2 AASTTALSSPFAGKAVKLSPSSSEVT--GNGKVTMRKTASKAKPVSSGSPWYGPDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 120 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 179 GGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 KGPLENLADHLADPVNNNAWSYATNFVPG 265
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 185/268 (69%), Positives = 207/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLG 60
A+S+ +L + GQ+ + ++ GNAK+TM WYGPDRVKYLG
Sbjct: 2 AASAMALSSPTLAGQAVKLSPNAPEI--QGNAKFTMRKTASKSVSSGSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 184/270 (68%), Positives = 210/270 (77%), Gaps = 14/270 (5%)
Query: 10 ASSSTSLRATPFLGQSRTT-ANALKDVVPMGNAKYTM---------GNELWYGPDRVKYL 59
A+++T++ +T GQ+ + L V G A+ TM + +WYG DR K+L
Sbjct: 2 ATAATAMNSTVLAGQALLKPVSELSRKVNAGEARVTMRKTVSKSSGSDSIWYGADRPKFL 61
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS +TPSYL GEF GDYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+TPE+L
Sbjct: 62 GPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELL 121
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
K V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 122 AK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA 180
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +G+ D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 181 GGP-LGDVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGPLENL DHL +PVANNAW YAT FVPG+
Sbjct: 239 KGPLENLNDHLADPVANNAWAYATNFVPGN 268
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 189/274 (68%), Positives = 205/274 (74%), Gaps = 19/274 (6%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM----------GNELWYGPD 54
MA T SS+ + +A P Q+ L V N + TM WYGPD
Sbjct: 1 MATMTLSSTFTGKAVPLSAQTE-----LPATVRSSNGRVTMRKTAGKPAASSGSPWYGPD 55
Query: 55 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCI 114
RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 56 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 115
Query: 115 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VE
Sbjct: 116 FPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVE 174
Query: 175 GFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
G+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQ
Sbjct: 175 GYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 234 AIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
AIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 233 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 266
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 174/222 (78%), Positives = 188/222 (84%), Gaps = 2/222 (0%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWA
Sbjct: 45 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGC+ PE+L K V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+ Q
Sbjct: 105 MLGALGCVFPELLSK-NGVQFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQ 163
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVLMG VEG+R+ G P + + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFS
Sbjct: 164 VVLMGFVEGYRVGGGPLGEDLDKLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFS 222
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
MFGFFVQAIVTGKGP+ENL+DH+ +PVANNAW YAT FVPG
Sbjct: 223 MFGFFVQAIVTGKGPVENLVDHIADPVANNAWAYATNFVPGK 264
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 185/269 (68%), Positives = 209/269 (77%), Gaps = 17/269 (6%)
Query: 11 SSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL-----------WYGPDRVKYL 59
++ST ++PF GQ+ T+ + ++ GN + +M WYGPDRVKYL
Sbjct: 2 AASTMALSSPFAGQAVKTSPSSSEL--FGNGRVSMRKTAAAKKAAPSGSPWYGPDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI
Sbjct: 120 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 178
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 179 GGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPLENL DHL +PVANNAW YAT FVPG
Sbjct: 237 KGPLENLADHLADPVANNAWSYATNFVPG 265
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 210/267 (78%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPF 62
++++++ + F G++ R ++ G A++TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC PE+LEK
Sbjct: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIF+EGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPLGLADDP +FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
++NL DH+ +PVANNAW +AT FVPG
Sbjct: 239 IQNLYDHVADPVANNAWAFATNFVPGQ 265
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 352 bits (904), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 184/269 (68%), Positives = 208/269 (77%), Gaps = 17/269 (6%)
Query: 11 SSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKYL 59
+SST ++ F G++ + + ++ GN K TM LWYGPDRVKYL
Sbjct: 2 ASSTMALSSSFAGKAVKLSPSSSEIT--GNGKVTMRKTASKAKPVSSGSLWYGPDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 120 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA 178
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 179 GGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 KGPLENLADHLADPVNNNAWAYATNFVPG 265
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 352 bits (903), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 175/223 (78%), Positives = 190/223 (85%), Gaps = 4/223 (1%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWA
Sbjct: 45 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGC+ PE+L K V F E VWFKAG+QIF EGGLDYLGNPNL+HAQSILA+ Q
Sbjct: 105 MLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQ 163
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
VVLMGL+EG+R+ G P +GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMF
Sbjct: 164 VVLMGLIEGYRVGGGP-LGEGLDKLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMF 221
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
SMFGFFVQAIVTGKGP+ENL DHL +PVANNAW +AT FVPG
Sbjct: 222 SMFGFFVQAIVTGKGPIENLSDHLADPVANNAWAFATNFVPGK 264
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 352 bits (903), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 182/267 (68%), Positives = 205/267 (76%), Gaps = 13/267 (4%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+++ +L + F GQ+ + + ++ GN + TM + WYGPDRVKYLG
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSASEIT--GNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIF EGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P N LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 GPLGEVVNPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
PLENL DHL +PV NNAW YAT FVPG
Sbjct: 238 PLENLADHLADPVNNNAWSYATNFVPG 264
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 352 bits (903), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 185/268 (69%), Positives = 209/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+S+ +L + F GQ+ + + ++ GN + TM + WYGPDRVKYLG
Sbjct: 2 AASTMALSSPSFAGQAVKLSPSASEI--SGNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEVVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWSYATNFVPG 264
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 184/268 (68%), Positives = 209/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+++ +L + F GQ+ + + ++ GN + TM + WYGPDRVKYLG
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSASEI--SGNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW +AT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAFATNFVPG 264
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/268 (69%), Positives = 208/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+S+ +L + F G++ + + MGNA+ +M + WYGPDRVKYLG
Sbjct: 2 ATSTMALSSPSFAGKAVKLTPSAPGL--MGNARVSMRKSVGKPVSSGSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 182/267 (68%), Positives = 205/267 (76%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS---------RTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
++T+ + + F GQ+ R T + K M + +WYGPDR KYLGPF
Sbjct: 2 ATTAFQQSAFAGQTALKQVNEFVRKTGGSGKGRTNMRRTVKSAPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALG + PE+LEK
Sbjct: 62 SDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEILEK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFS+FGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
++NL DH+ +PVANNAW YAT FVPG
Sbjct: 239 IQNLYDHVADPVANNAWAYATNFVPGQ 265
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 188/270 (69%), Positives = 206/270 (76%), Gaps = 14/270 (5%)
Query: 5 MAAATAS-SSTSLRATPF----LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MAA+T S SST++ TP G+ R T K WYGPDRVKYL
Sbjct: 1 MAASTMSISSTAMAGTPIKVGSFGEGRITMRKTA-----AKPKVAASGSPWYGPDRVKYL 55
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 56 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 115
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI
Sbjct: 116 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 174
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 175 GGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 232
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGPLENL DHL +PV NNAW YAT FVPG+
Sbjct: 233 KGPLENLADHLADPVNNNAWAYATNFVPGN 262
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 179/266 (67%), Positives = 210/266 (78%), Gaps = 13/266 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + +++ ++ V +G + TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S TPSYLTGE+PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC PE+L K
Sbjct: 62 SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG +EG+RI G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
+ENL DHL +PVANNAW YAT FVPG
Sbjct: 239 IENLFDHLADPVANNAWSYATNFVPG 264
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 188/270 (69%), Positives = 210/270 (77%), Gaps = 14/270 (5%)
Query: 5 MAAAT-ASSSTSLRATPF----LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MAA+T A SST++ TP G+ R T ++ V G K WYGPDRVKYL
Sbjct: 1 MAASTMAISSTAMAGTPIKVGSFGEGRIT---MRKTV--GKPKVAASGSPWYGPDRVKYL 55
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPGDYGWDTAGLSADP+ FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 56 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWAMLGALGCVFPELL 115
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI
Sbjct: 116 SR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA 174
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 175 GGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 232
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGPLENL DH+ +PV NNAW YAT FVPG+
Sbjct: 233 KGPLENLADHIADPVNNNAWAYATNFVPGN 262
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 184/270 (68%), Positives = 209/270 (77%), Gaps = 17/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKY 58
A+S+ +L ++ F G++ + + ++ GN K TM WYGPDRVKY
Sbjct: 2 AASTMALSSSSFAGKAVKLSPSSSEIT--GNGKVTMRKTASKAKPVSSGSPWYGPDRVKY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 120 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 179 AGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWAYATNFVPG 266
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/270 (68%), Positives = 209/270 (77%), Gaps = 17/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL-----------WYGPDRVKY 58
A+++ SL + F G++ + + +++ GN K TM + WYGPDRVKY
Sbjct: 2 AAATMSLSSPSFAGKAVKLSPSSYEII--GNGKVTMRKTVIKAKPVSSGSPWYGPDRVKY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS +PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 60 LGPFSGNSPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 120 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 179 AGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWAYATNFVPG 266
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 184/270 (68%), Positives = 209/270 (77%), Gaps = 17/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKY 58
A+S+ +L ++ F G++ + + ++ GN + TM WYGPDRVKY
Sbjct: 2 ATSTMALSSSTFAGKAVKLSPSSSEIT--GNGRVTMRKTATKAKPASSGSPWYGPDRVKY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI
Sbjct: 120 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 178
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 179 AGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWAFATNFVPG 266
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 184/269 (68%), Positives = 209/269 (77%), Gaps = 17/269 (6%)
Query: 11 SSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKYL 59
++ST+ ++PF G++ + + +V GN K TM WYGPDRVKYL
Sbjct: 2 AASTTALSSPFAGKAVKLSPSSSEVT--GNGKVTMRKTANKAKPVSSGSPWYGPDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 120 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQA+VTG
Sbjct: 179 GEP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTG 236
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 KGPLENLADHLADPVNNNAWSYATNFVPG 265
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 189/274 (68%), Positives = 207/274 (75%), Gaps = 22/274 (8%)
Query: 5 MAAAT-ASSSTSL---------RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPD 54
MAAAT A SS SL ++ +G R + VP G+ WYGPD
Sbjct: 1 MAAATMALSSPSLAGKAVKLNPSSSEIMGNGRVSMRKTTKPVPSGSP--------WYGPD 52
Query: 55 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCI 114
RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 53 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 112
Query: 115 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VE
Sbjct: 113 FPELLSR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVE 171
Query: 175 GFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
G+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQ
Sbjct: 172 GYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 229
Query: 234 AIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
AIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 230 AIVTGKGPLENLADHLSDPVNNNAWAYATNFVPG 263
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/234 (75%), Positives = 191/234 (81%), Gaps = 4/234 (1%)
Query: 36 VPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARN 95
+ M + +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+N
Sbjct: 34 ISMHRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
R LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+H
Sbjct: 94 RELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 152
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKV 214
AQSILA+ QVVLMG +EG+R+ G P +GEG D +YPGG FDPLGLADDP FAELKV
Sbjct: 153 AQSILAIWACQVVLMGFIEGYRVGGGP-LGEGLDSIYPGGA-FDPLGLADDPEAFAELKV 210
Query: 215 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL + ANNAW YAT FVPG
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADLAANNAWAYATNFVPGK 264
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 181/268 (67%), Positives = 206/268 (76%), Gaps = 13/268 (4%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMG---------NAKYTMGNELWYGPDRVKYLG 60
ASS+ +L + GQ+ +++ ++V G +K WYGPDRVKYLG
Sbjct: 2 ASSTMALSSPSLAGQAVKLGSSVSNIVGEGRITMRKTASKSKNVSSGSPWYGPDRVKYLG 61
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 62 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 121
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G
Sbjct: 122 R-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GP-LGEITDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 238
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 239 GPIENLADHLADPVNNNAWSYATNFVPG 266
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 185/266 (69%), Positives = 202/266 (75%), Gaps = 5/266 (1%)
Query: 5 MAAATASSSTS-LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
MAA+ +TS L A P + + M + +WYGPDR KYLGPFS
Sbjct: 1 MAASALHQTTSFLGAAPRRDELVRRVGDFGGRITMRRTVKSAPQSIWYGPDRPKYLGPFS 60
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
QTPSYLTGEF GDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 61 EQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-N 119
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 120 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGP- 178
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+GEG D +YPGG FDPLGLADDP TFAELKVKE+KNG LAMFSMFGFFVQAIVTGKGP+
Sbjct: 179 LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGSLAMFSMFGFFVQAIVTGKGPI 237
Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
ENL DH+ +PV NNAW YAT FVPG
Sbjct: 238 ENLFDHVADPVNNNAWAYATNFVPGK 263
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 189/274 (68%), Positives = 208/274 (75%), Gaps = 17/274 (6%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDR 55
MAAATA ST+L L N L V A+ +M + +WYG DR
Sbjct: 1 MAAATAMHSTALAGQSLL----KPVNELSRKVGNVEARVSMRKSASKSAASDSIWYGADR 56
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
KYLGPFS +TPSYL GEF GDYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+T
Sbjct: 57 PKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVT 116
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L K V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG
Sbjct: 117 PELLAK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEG 175
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +G+ D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 176 YRVAGGP-LGDVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 233
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
IVTGKGPLENL DHL +PVANNAW YAT FVPG+
Sbjct: 234 IVTGKGPLENLNDHLADPVANNAWAYATNFVPGN 267
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 189/273 (69%), Positives = 206/273 (75%), Gaps = 17/273 (6%)
Query: 5 MAAATASSSTSL---------RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA A SS SL A+ LG+ R T ++ G+ WYGPDR
Sbjct: 1 MAATMALSSPSLAGKAVKLAPSASDVLGEGRVT---MRKSTAKAKPAAASGSP-WYGPDR 56
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
VKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 57 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 116
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG
Sbjct: 117 PELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG 175
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 176 YRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 234 IVTGKGPLENLADHLADPVNNNAWAYATNFVPG 266
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 185/270 (68%), Positives = 206/270 (76%), Gaps = 17/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKY 58
A+SS +L + F GQ+ + D+ +G + TM WYGPDRVKY
Sbjct: 2 AASSMALSSPSFAGQAVKLSPTASDL--LGEGRITMRKTAGKPKPVSSGSPWYGPDRVKY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 60 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI
Sbjct: 120 LSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 178
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 179 AGGP-LGEITDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 236
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWAYATNFVPG 266
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/268 (68%), Positives = 209/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+++ +L + F GQ+ + + ++ GN + TM + WYGPDRVKYLG
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSASEI--SGNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLS 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW +AT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAFATNFVPG 264
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 184/270 (68%), Positives = 208/270 (77%), Gaps = 17/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKY 58
A+S+ +L + F G++ + + ++ GN K TM WYGPDRVKY
Sbjct: 2 AASTMALSSPSFAGKAVKLSPSSSEIT--GNGKVTMRKTASKAKTVSSGSPWYGPDRVKY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 120 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 179 AGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWAYATNFVPG 266
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 190/272 (69%), Positives = 206/272 (75%), Gaps = 14/272 (5%)
Query: 2 ASIMAAATAS-SSTSLRATP----FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRV 56
AS MA ++ S + +L+ P LG+ R T G AK WYG DRV
Sbjct: 3 ASTMALSSPSLAGKALKLAPSASDLLGEGRVTMRKTG-----GRAKPVSSGSPWYGTDRV 57
Query: 57 KYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITP 116
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct: 58 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117
Query: 117 EVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGF 176
E+L + V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QV+LMG VEG+
Sbjct: 118 ELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGY 176
Query: 177 RINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI 235
RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAI
Sbjct: 177 RIGGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 234
Query: 236 VTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
VTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 235 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 266
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 182/266 (68%), Positives = 205/266 (77%), Gaps = 12/266 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDV------VPMGNAKYTMGNELWYGPDRVKYLGPFS 63
++++++ + F GQ+ + ++ V V M + +WYG DR KYLGPFS
Sbjct: 2 ATSAIQQSAFTGQTALKNRDELVRKVGVVGGRVSMRRTVKSAPQSIWYGADRPKYLGPFS 61
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSK-N 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG +EG+RI G P
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRIGGGP- 179
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 LGEGLDPLYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPV 238
Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
ENL DHL +P NNAW YAT FVPG
Sbjct: 239 ENLYDHLADPATNNAWAYATNFVPGK 264
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 180/267 (67%), Positives = 207/267 (77%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ ++ ++ + + TM +WYG DR KYLGPF
Sbjct: 2 ATSAIQQSAFAGQTALKSQNEFIRKIGSFEGGRVTMRRTVKSAPQSIWYGEDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FARN LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 239 IENLSDHIADPVANNAWAYATNFVPGK 265
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 182/268 (67%), Positives = 208/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+S+ +L + F GQ+ + + ++ GN + +M + WYGPDRVKYLG
Sbjct: 2 AASTMALSSPSFAGQAVKLSPSASEIT--GNGRVSMRKTVAKPVASSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 183/267 (68%), Positives = 208/267 (77%), Gaps = 14/267 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM--------GNELWYGPDRVKYLGP 61
A+S+ +L + F G++ + A +++ MGN + +M WYGPDRVKYL P
Sbjct: 2 AASTMALSSPSFAGKAVKLSPAPREL--MGNGRVSMRRTAKPTPSGSPWYGPDRVKYLSP 59
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
FS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+R+ G
Sbjct: 120 -NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGG 178
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 P-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
PLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 PLENLADHLADPVNNNAWAYATNFVPG 263
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 186/267 (69%), Positives = 205/267 (76%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPF 62
++T+L+ + F GQ+ + ++ V G + TM +WYGPDR KYLGPF
Sbjct: 2 ATTALQHSSFAGQTSLNLSNEFIRKVGSFGEGRITMRRTVKSVPASIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRIGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV GKGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVPGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL D L PVANNAW YA FVPG
Sbjct: 239 IENLSDPLAAPVANNAWAYAPNFVPGK 265
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 183/268 (68%), Positives = 209/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+++ +L + F GQ+ + + ++ GN + TM + WYGPDRVKYLG
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSASEI--SGNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW +AT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAFATNFVPG 264
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 180/267 (67%), Positives = 208/267 (77%), Gaps = 13/267 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + + L+ V G + TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S TPSYLTGE+PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC PE+L K
Sbjct: 62 SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG +EG+RI G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DHL +PVANNAW YAT FVPG+
Sbjct: 239 IENLFDHLADPVANNAWSYATNFVPGN 265
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 180/266 (67%), Positives = 207/266 (77%), Gaps = 13/266 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + + L+ V G + TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S TPSYLTGE+PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC PE+L K
Sbjct: 62 SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG +EG+RI G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
+ENL DHL +PVANNAW YAT FVPG
Sbjct: 239 IENLFDHLADPVANNAWSYATNFVPG 264
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 182/268 (67%), Positives = 208/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLG 60
A+S+ +L + F G++ + + ++ MGN + +M WYGPDRVKYLG
Sbjct: 2 ATSTMALSSPSFAGKAVKLSPSAPEL--MGNGRVSMRKTAAKSVSSGSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+R+ G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 178/219 (81%), Positives = 189/219 (86%), Gaps = 4/219 (1%)
Query: 51 YGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA 110
YGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 63
Query: 111 LGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLM 170
LGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLM
Sbjct: 64 LGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLM 122
Query: 171 GLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
G VEG+R+ G P +GEG D +YPGG FDPLGLADDP TFAELKVKE+KNGRLAMFSMFG
Sbjct: 123 GFVEGYRVGGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFG 180
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 181 FFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 219
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 350 bits (897), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 183/271 (67%), Positives = 207/271 (76%), Gaps = 15/271 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALHQTTS-----FLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L K V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG +EG+R+
Sbjct: 116 LSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFIEGYRV 174
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GEG D +YPGG FDPLGLADDP T AELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 175 GGGP-LGEGLDKIYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVT 232
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGP+ENL DH+ +PV NNAW +AT F PGS
Sbjct: 233 GKGPVENLFDHVADPVNNNAWAFATNFAPGS 263
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 350 bits (897), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 176/223 (78%), Positives = 189/223 (84%), Gaps = 4/223 (1%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
+WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWA
Sbjct: 18 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 77
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGC+ PE+L K V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ Q
Sbjct: 78 MLGALGCVFPEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQ 136
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
VVLMG VEG+R+ G P +GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMF
Sbjct: 137 VVLMGFVEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMF 194
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
SMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 195 SMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 350 bits (897), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 186/276 (67%), Positives = 209/276 (75%), Gaps = 21/276 (7%)
Query: 4 IMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL-----------WYG 52
+ A++ A SS +L P T+AN +G A++TM WYG
Sbjct: 1 MAASSMALSSPTLTGKPV----ETSANPSSQ--ELGGARFTMRKSATTKKVASSGSPWYG 54
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALG
Sbjct: 55 PDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALG 114
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
C+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG
Sbjct: 115 CVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 173
Query: 173 VEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 231
VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFF
Sbjct: 174 VEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF 231
Query: 232 VQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
VQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 232 VQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPG 267
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 350 bits (897), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 181/270 (67%), Positives = 208/270 (77%), Gaps = 17/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL-----------WYGPDRVKY 58
A+++ +L ++ F G++ +++ ++ GN K TM + WYGPDRVKY
Sbjct: 2 AATTMALSSSSFAGKAVKLSSSSSEIT--GNGKVTMRKTVTKAKPASSSSPWYGPDRVKY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS + PSYLTGEFP DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 60 LGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
+ + F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 120 FAR-NGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 179 AGGP-LGEVIDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWSYATNFVPG 266
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 350 bits (897), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 180/265 (67%), Positives = 206/265 (77%), Gaps = 13/265 (4%)
Query: 13 STSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPFS 63
+++++ + F GQ+ + + L+ V G + TM +WYGPDR KYLGPFS
Sbjct: 3 TSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPFS 62
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
TPSYLTGE+PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC PE+L K
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK-N 121
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG +EG+RI G P
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP- 180
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+GEG D LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 181 LGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
Query: 243 ENLLDHLENPVANNAWVYATKFVPG 267
ENL DHL +PVANNAW YAT FVPG
Sbjct: 240 ENLFDHLADPVANNAWSYATNFVPG 264
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 350 bits (897), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 188/274 (68%), Positives = 206/274 (75%), Gaps = 22/274 (8%)
Query: 5 MAAAT-ASSSTSL---------RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPD 54
MAAAT A SS SL ++ +G R + VP G+ WYGPD
Sbjct: 1 MAAATMALSSPSLAGKAVKLNPSSSEIMGNGRVSMRKTTKPVPSGSP--------WYGPD 52
Query: 55 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCI 114
RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 53 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 112
Query: 115 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VE
Sbjct: 113 FPELLSR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVE 171
Query: 175 GFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
G+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQ
Sbjct: 172 GYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 229
Query: 234 AIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
AIVTGKGPLENL DHL +PV NNAW YAT F PG
Sbjct: 230 AIVTGKGPLENLADHLSDPVNNNAWAYATNFAPG 263
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 349 bits (896), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 187/273 (68%), Positives = 207/273 (75%), Gaps = 20/273 (7%)
Query: 5 MAAAT-ASSSTSLR--------ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA+T A SS+SL +TP LG R + +K WYGPDR
Sbjct: 1 MAASTMALSSSSLAGQAIKLAPSTPQLGVGRVSMRKTA-------SKTVTSGSPWYGPDR 53
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
VKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 54 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 113
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG
Sbjct: 114 PELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEG 172
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 173 YRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 230
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 231 IVTGKGPLENLADHLADPVNNNAWAYATNFVPG 263
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 349 bits (896), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 181/268 (67%), Positives = 209/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+S+ +L + F GQ+ + + ++ GN + +M + WYGPDRVKYLG
Sbjct: 2 AASTMALSSPSFAGQAVKLSPSAPEIT--GNGRVSMRKTVAKPVASSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ QV+LMG VEG+R+ G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWSYATNFVPG 264
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 349 bits (896), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 179/266 (67%), Positives = 207/266 (77%), Gaps = 13/266 (4%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + + + L+ G + TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSSFAGQTALKPSNDLLRKAGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S TPSYLTGE+PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC PE+L K
Sbjct: 62 SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG +EG+RI G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
+ENL DHL +PVANNAW YAT FVPG
Sbjct: 239 IENLFDHLADPVANNAWSYATNFVPG 264
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 349 bits (896), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 187/273 (68%), Positives = 203/273 (74%), Gaps = 17/273 (6%)
Query: 4 IMAAATASSSTSLRATPF--------LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
+ A++ A SS +L P LG SR T K WYGPDR
Sbjct: 1 MAASSMALSSPTLAGKPVKLSPSSQELGASRFTMRKSATT-----KKVASSGSPWYGPDR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
VKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 56 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 175 YRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 233 IVTGKGPLENLADHLSDPVNNNAWAYATNFVPG 265
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 349 bits (896), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 182/268 (67%), Positives = 208/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLG 60
A+S+ +L + F G++ + + ++ MGN + +M WYGPDRVKYLG
Sbjct: 2 ATSTMALSSPSFAGKAVKLSPSAPEL--MGNGRVSMRKTAAKNVSSGSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+R+ G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRVAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 349 bits (896), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 181/254 (71%), Positives = 200/254 (78%), Gaps = 9/254 (3%)
Query: 15 SLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEF 74
S A+ LG+ R T G +K + WYGPDRVKYLGPFS ++PSYLTGEF
Sbjct: 21 SPTASETLGEGRITMRKAA-----GKSKVATIDSPWYGPDRVKYLGPFSGESPSYLTGEF 75
Query: 75 PGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFK 134
PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFK
Sbjct: 76 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFK 134
Query: 135 AGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPG 193
AGAQIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG +EG+R+ G P +GE D LYPG
Sbjct: 135 AGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGP-LGEVTDPLYPG 193
Query: 194 GQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
G FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV
Sbjct: 194 GS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252
Query: 254 ANNAWVYATKFVPG 267
NNAW +AT FVPG
Sbjct: 253 NNNAWAFATNFVPG 266
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 349 bits (895), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 182/269 (67%), Positives = 206/269 (76%), Gaps = 17/269 (6%)
Query: 11 SSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL-----------WYGPDRVKYL 59
+S+ +L + F G + + + ++ GN K M + WYGPDRVKYL
Sbjct: 3 ASTMALSSPSFAGNAVKLSPSSSEIT--GNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYL 60
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG +EG+R+
Sbjct: 121 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA 179
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 180 GGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPLENL+DHL +PV NNAW YAT FVPG
Sbjct: 238 KGPLENLVDHLADPVNNNAWAYATNFVPG 266
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 349 bits (895), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 205/265 (77%), Gaps = 12/265 (4%)
Query: 11 SSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---GNEL-----WYGPDRVKYLGPF 62
++ST ++ F+G++ A D+ MGN + TM G ++ WYGPDRVKYLGPF
Sbjct: 2 ATSTMTLSSSFIGKAVQLAPTGNDL--MGNGRVTMRKTGRQVSSGSPWYGPDRVKYLGPF 59
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S + PSYLTGEFPGDYGWD AGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 60 SGEPPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR- 118
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G P
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 178
Query: 183 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+ LYPGG FDPLGLADDP FAELKVKEIKNGR AMFSMFGFFVQAIVTGKGPL
Sbjct: 179 LGKVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRSAMFSMFGFFVQAIVTGKGPL 237
Query: 243 ENLLDHLENPVANNAWVYATKFVPG 267
ENL DHL +PV NNAW YAT FVPG
Sbjct: 238 ENLADHLADPVNNNAWAYATNFVPG 262
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 349 bits (895), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 182/268 (67%), Positives = 209/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+++ +L + F GQ+ + + ++ GN + TM + WYGPDRVKYLG
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSASEI--SGNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW +AT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAFATNFVPG 264
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 349 bits (895), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 186/272 (68%), Positives = 206/272 (75%), Gaps = 14/272 (5%)
Query: 2 ASIMAAATAS-SSTSLRATP----FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRV 56
AS MA ++ S + +++ P LG+ R T G K WYGPDRV
Sbjct: 3 ASTMALSSPSLAGQAIKLAPSSSDLLGEGRVTMRKTA-----GRPKPVSSGSPWYGPDRV 57
Query: 57 KYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITP 116
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct: 58 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 117
Query: 117 EVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGF 176
E+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+
Sbjct: 118 ELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 176
Query: 177 RINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI 235
RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAI
Sbjct: 177 RIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 234
Query: 236 VTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
VTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 235 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 266
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 349 bits (895), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 181/268 (67%), Positives = 209/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+++ +L + F GQ+ + + ++ GN + +M + WYGPDRVKYLG
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSAPEIT--GNGRVSMRKTVAKPVASSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 349 bits (895), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 187/273 (68%), Positives = 207/273 (75%), Gaps = 20/273 (7%)
Query: 5 MAAAT-ASSSTSLR--------ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA+T A SS+SL +TP LG R + +K WYGPDR
Sbjct: 1 MAASTMALSSSSLAGQAIKLAPSTPELGVGRVSMRKTA-------SKTVSSGSPWYGPDR 53
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
VKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 54 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 113
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG
Sbjct: 114 PELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEG 172
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 173 YRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 230
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 231 IVTGKGPLENLADHLADPVNNNAWAYATNFVPG 263
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 349 bits (895), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 182/270 (67%), Positives = 209/270 (77%), Gaps = 17/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL-----------WYGPDRVKY 58
A+++ +L ++ F G++ + + ++ GN K TM + WYGPDRVKY
Sbjct: 2 AAATMALSSSSFAGKAVKLSPSSSEIT--GNGKVTMRKTVTKAKPLSSGSPWYGPDRVKY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 120 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLA+DP FAELKVK IKNGRLAMFSMFGFFVQAIVT
Sbjct: 179 AGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVT 236
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWSYATNFVPG 266
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 349 bits (895), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 180/268 (67%), Positives = 209/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+++ +L + F GQ+ + + ++ GN + +M + WYGPDRVKYLG
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSASEIT--GNGRVSMRKTVAKPVASSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+R+ G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWSYATNFVPG 264
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 349 bits (895), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 181/249 (72%), Positives = 197/249 (79%), Gaps = 13/249 (5%)
Query: 30 NALKDVVPMGNAKYTM---------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGW 80
N L V A+ TM + +WYG DR KYLGPFS +TPSYL GEF GDYGW
Sbjct: 22 NELSRKVGSSQARVTMRRTVNKSAGSDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGW 81
Query: 81 DTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
DTAGLS+DPE FARNR LEVIH RWAMLGALGC+TPE+L K V F E VWFKAGAQIF
Sbjct: 82 DTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAK-SGVKFGEAVWFKAGAQIF 140
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDP 199
SEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G P +GE D +YPGG FDP
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP-LGEVTDPIYPGGS-FDP 198
Query: 200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWV 259
LGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PVANNAW
Sbjct: 199 LGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWA 258
Query: 260 YATKFVPGS 268
YAT FVPG+
Sbjct: 259 YATNFVPGN 267
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 349 bits (895), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 187/268 (69%), Positives = 206/268 (76%), Gaps = 8/268 (2%)
Query: 5 MAAAT---ASSSTSLRATPFLGQSRTTANALKDVVP-MGNAKYTMGNELWYGPDRVKYLG 60
MAAAT +SSS + +A S+ T N + + AK WYGPDRVKYLG
Sbjct: 1 MAAATMAISSSSFAGKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLG 60
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 61 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFA 120
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+ G
Sbjct: 121 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 180 GP-LGEVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 237
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW +AT FVPG
Sbjct: 238 GPLENLADHLADPVNNNAWAFATNFVPG 265
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 349 bits (895), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 183/268 (68%), Positives = 206/268 (76%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+SS +L + F G+ + ++ GN++ TM WYGPDRVKYLG
Sbjct: 2 AASSMALSSPSFAGKVVKLTPSSPEL--FGNSRVTMRKSATKSVSSGSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLTDPVNNNAWAYATNFVPG 264
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 349 bits (895), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 180/240 (75%), Positives = 194/240 (80%), Gaps = 13/240 (5%)
Query: 38 MGNAKYTM---------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSAD 88
GNAK+TM WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 18 QGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 77
Query: 89 PEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYL 148
PE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYL
Sbjct: 78 PETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYL 136
Query: 149 GNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPV 207
GNP+LVHAQSILA+ QVVLMG VEG+RI G P +GE D +YPGG FDPLGLADDP
Sbjct: 137 GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPE 194
Query: 208 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 195 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 254
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/270 (67%), Positives = 208/270 (77%), Gaps = 17/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKY 58
A+S+ +L ++ F G++ + + ++ GN + TM WYGPDRVKY
Sbjct: 2 ATSTMALSSSTFAGKAVKLSPSSSEIT--GNGRVTMRKTATKAKPASSGSPWYGPDRVKY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI
Sbjct: 120 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 178
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLG ADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 179 AGGP-LGEVVDPLYPGGS-FDPLGPADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWAFATNFVPG 266
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/273 (68%), Positives = 207/273 (75%), Gaps = 20/273 (7%)
Query: 5 MAAAT-ASSSTSLR--------ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA+T A SS+SL +TP LG R + +K WYGPDR
Sbjct: 1 MAASTMALSSSSLAGQAIKLAPSTPQLGVGRVSMRKTA-------SKTVSSGSPWYGPDR 53
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
VKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 54 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 113
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG
Sbjct: 114 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEG 172
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 173 YRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 230
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 231 IVTGKGPLENLADHLADPVNNNAWAYATNFVPG 263
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 181/270 (67%), Positives = 209/270 (77%), Gaps = 17/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKY 58
A+S+ +L ++ F G++ + + ++ GN K TM + WYGP+RVKY
Sbjct: 2 AASTMALSSSSFAGKAVKLSPSSSEIT--GNGKVTMRKTASKAKPVSSSSPWYGPNRVKY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFK G+QIFS+GGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 120 LAR-NGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 179 AGEP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWAYATNFVPG 266
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/268 (68%), Positives = 206/268 (76%), Gaps = 14/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL--------WYGPDRVKYLGP 61
A+S+ +L + F G++ + + ++ MGN + M WYGPDRVKYLGP
Sbjct: 2 AASTMALSSPAFAGKAVKLSPSAPEL--MGNGRVNMRKTFNKPPSGSPWYGPDRVKYLGP 59
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 60 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 120 -NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGG 178
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 P-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 241 PLENLLDHLENPVANNAWVYATKFVPGS 268
PLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 PLENLADHLADPVNNNAWAYATNFVPGK 264
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 180/267 (67%), Positives = 208/267 (77%), Gaps = 14/267 (5%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDV--------VPMGNAKYTMGNELWYGPDRVKYLGP 61
++++++ + F GQ+ + + + L+ V V M + +WYGPDR KYLGP
Sbjct: 2 ATSAIQHSSFAGQTALKPSNDLLRKVGASNGGGRVVMRRTVKSTPQSIWYGPDRPKYLGP 61
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
FS TPSYLTGE+PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC PE+L K
Sbjct: 62 FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 121
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+RI G
Sbjct: 122 -NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRIGGG 180
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GEG D LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 P-LGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
P+ENL DHL +PVANNAW YAT FVPG
Sbjct: 239 PIENLFDHLADPVANNAWSYATNFVPG 265
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/266 (68%), Positives = 204/266 (76%), Gaps = 6/266 (2%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNA--KYTMGNELWYGPDRVKYLGPF 62
MAA+T + S+ A + S +T + M A K WYGPDRVKYLGPF
Sbjct: 1 MAASTMALSSPSLAGQAIKLSPSTPELSGGRISMRKAASKSVSSGSPWYGPDRVKYLGPF 60
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 61 SGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR- 119
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFS+FGFFVQAIVTGKGP
Sbjct: 180 -LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSIFGFFVQAIVTGKGP 237
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
LENL DHL +PV NNAW YAT FVPG
Sbjct: 238 LENLADHLADPVNNNAWAYATNFVPG 263
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 188/273 (68%), Positives = 201/273 (73%), Gaps = 19/273 (6%)
Query: 5 MAAATASSSTSL---------RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA A SS S A+ LGQ R T G WYGPDR
Sbjct: 1 MAATMALSSPSFAGKAVKLAPSASGVLGQGRVTMRK------AGGKPAASSGSPWYGPDR 54
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
VKYLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 55 VKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 114
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG
Sbjct: 115 PELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG 173
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 174 YRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 232 IVTGKGPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 180/268 (67%), Positives = 208/268 (77%), Gaps = 15/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLG 60
A+++ +L + F GQ+ + + ++ GN + +M + WYGPDRVKYLG
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSASEIT--GNGRVSMRKTAAKPVSSSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLT EFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 182/268 (67%), Positives = 207/268 (77%), Gaps = 6/268 (2%)
Query: 2 ASIMAAATAS-SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
AS MA ++ S + +++ +P + A+ + AK WYGPDRVKYLG
Sbjct: 3 ASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKT-VTKAKPVSSGSPWYGPDRVKYLG 61
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 62 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 121
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG +EG+R+ G
Sbjct: 122 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAG 180
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPL+NL+DHL +PV NNAW YAT FVPG
Sbjct: 239 GPLDNLVDHLADPVNNNAWAYATNFVPG 266
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 180/251 (71%), Positives = 198/251 (78%), Gaps = 9/251 (3%)
Query: 18 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD 77
A+ +G+ R T G K + WYGPDRVKYLGPFS ++PSYLTGEFPGD
Sbjct: 24 ASEIIGEGRITMRKTA-----GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGD 78
Query: 78 YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGA 137
YGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+
Sbjct: 79 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGS 137
Query: 138 QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQY 196
QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG
Sbjct: 138 QIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS- 195
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NN
Sbjct: 196 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
Query: 257 AWVYATKFVPG 267
AW +AT FVPG
Sbjct: 256 AWNFATNFVPG 266
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/272 (68%), Positives = 203/272 (74%), Gaps = 14/272 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A S+SL L R N L V A+ TM +WYGPDR K
Sbjct: 1 MATASAIQSSSLAGQTLL---RPQQNELVKKVGTAQARITMRRTVRSAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS TPSYLTGEFPGDYGWDTA +SADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L K + F E VWFKAGAQIFSEGGLDY GNPNL+HAQSILA+ QVVLMGL+EG+R
Sbjct: 118 LLAK-NGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYR 176
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G +GEG D L PGG FDPLGLADDP AELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 177 VGG-GTLGEGLDPLLPGGA-FDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIV 234
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +PVANNAW YAT FVPG
Sbjct: 235 TGKGPIENLYDHLADPVANNAWAYATNFVPGK 266
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 188/274 (68%), Positives = 205/274 (74%), Gaps = 17/274 (6%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDR 55
MAAA A ST L L N L V +A+ TM + +WYG DR
Sbjct: 1 MAAAIAMHSTGLAGQSLL----KPVNELSRRVGNVDARVTMRRTVSKSARSDSIWYGADR 56
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
K+LGPFS +TPSYL GEF GDYGWDTAGLS+D E FARNR LEVIH RWAMLGALGC+T
Sbjct: 57 PKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLT 116
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L K V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 117 PELLAK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 175
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 176 YRVAGGP-LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 233
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
IVTGKGPLENL DHL +PVANNAW YAT F PG+
Sbjct: 234 IVTGKGPLENLNDHLADPVANNAWAYATNFTPGN 267
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 180/239 (75%), Positives = 193/239 (80%), Gaps = 12/239 (5%)
Query: 38 MGNAKYTM--------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADP 89
MGN + +M WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 28 MGNGRISMRKTGKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
Query: 90 EAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLG 149
E FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG
Sbjct: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLG 146
Query: 150 NPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVT 208
NP+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLADDP
Sbjct: 147 NPSLVHAQSILAIWASQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEA 204
Query: 209 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
F+ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 205 FSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 263
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 207/267 (77%), Gaps = 14/267 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL--------WYGPDRVKYLGP 61
A+++ +L + F G++ + + ++ MGN + +M WYGPDRVKYLGP
Sbjct: 2 AAATMALSSPAFAGKAVKLSPSSPEL--MGNGRVSMRKTTKPVSSGSPWYGPDRVKYLGP 59
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
FS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 119
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 -NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGG 178
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 P-LGEITDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
PLENL DHL +PV NNAW YAT F PG
Sbjct: 237 PLENLADHLADPVNNNAWAYATNFAPG 263
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 180/245 (73%), Positives = 197/245 (80%), Gaps = 9/245 (3%)
Query: 30 NALKDVVPMGNAKYTM-----GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAG 84
N L V A+ TM + +WYG DR K+LGPFS +TPSYL GEF GDYGWDTAG
Sbjct: 22 NELSRRVGANEARVTMRKSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAG 81
Query: 85 LSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGG 144
LS+DPE FARNR LEVIH RWAMLGALGC+TPE+L K V F E VWFKAGAQIFSEGG
Sbjct: 82 LSSDPETFARNRELEVIHARWAMLGALGCLTPELLAK-SGVKFGEAVWFKAGAQIFSEGG 140
Query: 145 LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLA 203
LDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G P +GE D +YPGG FDPLGLA
Sbjct: 141 LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP-LGEVTDPIYPGGS-FDPLGLA 198
Query: 204 DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATK 263
DDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PVANNAW YAT
Sbjct: 199 DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYATN 258
Query: 264 FVPGS 268
FVPG+
Sbjct: 259 FVPGN 263
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 177/251 (70%), Positives = 196/251 (78%), Gaps = 9/251 (3%)
Query: 18 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD 77
A+ LG+ R T G K + WYGPDRVKYLGPFS ++PSYLTGEFPGD
Sbjct: 24 ASEILGEGRITMRKTA-----GKTKSVSSDSPWYGPDRVKYLGPFSGESPSYLTGEFPGD 78
Query: 78 YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGA 137
YGWDTAGLSADPE F +NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGA
Sbjct: 79 YGWDTAGLSADPETFTKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGA 137
Query: 138 QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQY 196
QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG +EG+R+ G P +GE D LYPGG
Sbjct: 138 QIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPLYPGGS- 195
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NN
Sbjct: 196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
Query: 257 AWVYATKFVPG 267
AW +AT F PG
Sbjct: 256 AWAFATNFAPG 266
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 174/231 (75%), Positives = 191/231 (82%), Gaps = 4/231 (1%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
G A G WYGPDRVKYLGPFS ++PSYLTGE+PGDYGWDTAGLSADPE FA+NR L
Sbjct: 36 GRASSVGGGSPWYGPDRVKYLGPFSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNREL 95
Query: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
EVIH RWAMLGALGC+ PE+L K + F E VWFKAG+QIF EGGLDYLGNP+LVHAQS
Sbjct: 96 EVIHSRWAMLGALGCVFPELLSK-NGIKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQS 154
Query: 159 ILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEI 217
ILA+ QV+LMG VEG+RI G P +GE D +YPGG FDPLGLA+DP FAELKVKE+
Sbjct: 155 ILAIWASQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLAEDPEAFAELKVKEL 212
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PVANNAW YAT F PGS
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANNAWAYATNFTPGS 263
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 48 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 107
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 108 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVIL 166
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 167 MGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 224
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 225 GFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPG 263
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 174/231 (75%), Positives = 191/231 (82%), Gaps = 4/231 (1%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
G A G WYGPDRVKYLGPFS ++PSYLTGE+PGDYGWDTAGLSADPE FA+NR L
Sbjct: 45 GKASSVGGGSPWYGPDRVKYLGPFSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNREL 104
Query: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
EVIH RWAMLGALGC+ PE+L K + F E VWFKAG+QIF EGGLDYLGNP+LVHAQS
Sbjct: 105 EVIHSRWAMLGALGCVFPELLSK-NGIKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQS 163
Query: 159 ILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEI 217
ILA+ QV+LMG VEG+RI G P +GE D +YPGG FDPLGLA+DP FAELKVKE+
Sbjct: 164 ILAIWASQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLAEDPEAFAELKVKEL 221
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PVANNAW YAT F PGS
Sbjct: 222 KNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANNAWAYATNFTPGS 272
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 183/270 (67%), Positives = 207/270 (76%), Gaps = 17/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL-----------WYGPDRVKY 58
A+++ +L + F G++ + + ++ GN K TM + WYGPDRVKY
Sbjct: 2 AAATMALSSPSFAGKAVKFSPSSSEIT--GNGKATMRKTVTKAKPVSSGSPWYGPDRVKY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS + PSYLTGEFPGDYGWDTA LSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 60 LGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 120 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 179 AGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWSYATNFVPG 266
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 183/270 (67%), Positives = 206/270 (76%), Gaps = 18/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL-----------WYGPDRVKY 58
A+SS +L + G+ + ++ +G A++TM WYGPDRVKY
Sbjct: 2 AASSMALSSPTLAGKPVKLTPSSQE---LGAARFTMRKSATTKKVASSGSPWYGPDRVKY 58
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 59 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 118
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI
Sbjct: 119 LSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 177
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 178 AGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 235
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 236 GKGPLENLADHLADPVNNNAWAYATNFVPG 265
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 180/250 (72%), Positives = 198/250 (79%), Gaps = 13/250 (5%)
Query: 29 ANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYG 79
AN L V A+ TM + +WYG DR K+LGPFS +TPSYL GEF GDYG
Sbjct: 21 ANELVRKVGTSQARVTMRKTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYG 80
Query: 80 WDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQI 139
WDTAGLS+DPE FARNR LEVIH RWAMLGALGC+TPE+L K V F E VWFKAGAQI
Sbjct: 81 WDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAK-SGVKFGEAVWFKAGAQI 139
Query: 140 FSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFD 198
FSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G P +G+ D +YPGG FD
Sbjct: 140 FSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP-LGDVTDPIYPGGS-FD 197
Query: 199 PLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAW 258
PLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PVANNAW
Sbjct: 198 PLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAW 257
Query: 259 VYATKFVPGS 268
YAT FVPG+
Sbjct: 258 AYATNFVPGN 267
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 180/251 (71%), Positives = 196/251 (78%), Gaps = 9/251 (3%)
Query: 18 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD 77
A+ LG+ R T G K WYGPDRVKYLGPFS + PSYLTGEFPGD
Sbjct: 24 ASEILGEGRVTMRKTA-----GKPKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGD 78
Query: 78 YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGA 137
YGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+
Sbjct: 79 YGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGS 137
Query: 138 QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQY 196
QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG
Sbjct: 138 QIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS- 195
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NN
Sbjct: 196 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
Query: 257 AWVYATKFVPG 267
AW +AT FVPG
Sbjct: 256 AWSFATNFVPG 266
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 177/242 (73%), Positives = 195/242 (80%), Gaps = 15/242 (6%)
Query: 38 MGNAKYTMGNEL-----------WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLS 86
+G A++TM WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLS
Sbjct: 27 LGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLS 86
Query: 87 ADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLD 146
ADPE F++NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLD
Sbjct: 87 ADPETFSKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLD 145
Query: 147 YLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADD 205
YLGNP+LVHAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG FDPLGLADD
Sbjct: 146 YLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADD 203
Query: 206 PVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFV 265
P FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FV
Sbjct: 204 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFV 263
Query: 266 PG 267
PG
Sbjct: 264 PG 265
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 176/221 (79%), Positives = 189/221 (85%), Gaps = 4/221 (1%)
Query: 49 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+WYGPDR KYLGPFS TPSYLTGEFPGDYGWDTA +SADPE FA+NR LEVIH RWAML
Sbjct: 9 IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAML 68
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVV
Sbjct: 69 GALGCVFPELLVK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 127
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL+EG+R+ G P +GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSM
Sbjct: 128 LMGLIEGYRVGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSM 185
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP+ENL DHL +PVANNAW YAT FVPG
Sbjct: 186 FGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 226
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 183/270 (67%), Positives = 206/270 (76%), Gaps = 18/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKY 58
A+SS +L + G+ + ++ +G A++TM WYGPDRVKY
Sbjct: 2 AASSMALSSPTLAGKPVKLTPSSQE---LGAARFTMRKAATTKKVASSGSPWYGPDRVKY 58
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 59 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 118
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI
Sbjct: 119 LSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 177
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 178 AGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 235
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 236 GKGPLENLADHLADPVNNNAWAYATNFVPG 265
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 180/245 (73%), Positives = 194/245 (79%), Gaps = 14/245 (5%)
Query: 24 QSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTA 83
+ RTTA L+ + WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTA
Sbjct: 45 RPRTTAGKLRPAT----------SSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTA 94
Query: 84 GLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEG 143
GLSADPE FA+NR LEVIH RWAMLGALGCI PE+L + V F E VWFKAG+QIFSEG
Sbjct: 95 GLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLAR-NGVKFGEAVWFKAGSQIFSEG 153
Query: 144 GLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGL 202
GLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G P +GE D LYPG FDPLGL
Sbjct: 154 GLDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIAGGP-LGEITDPLYPGNS-FDPLGL 211
Query: 203 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYAT 262
ADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT
Sbjct: 212 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 271
Query: 263 KFVPG 267
FVPG
Sbjct: 272 NFVPG 276
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 186/272 (68%), Positives = 204/272 (75%), Gaps = 19/272 (6%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL--------WYGPDRV 56
MAAAT + S+ P L N ++ MGN +M WYGPDRV
Sbjct: 1 MAAATMALSS-----PSLAGKAVKLNPFSEI--MGNGCISMRKTTKPVPSGSPWYGPDRV 53
Query: 57 KYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITP 116
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct: 54 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 113
Query: 117 EVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGF 176
E+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+
Sbjct: 114 ELLSR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGY 172
Query: 177 RINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI 235
RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSM GFFVQAI
Sbjct: 173 RIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMLGFFVQAI 230
Query: 236 VTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
VTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 231 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 262
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 183/258 (70%), Positives = 202/258 (78%), Gaps = 11/258 (4%)
Query: 11 SSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYL 70
+ +S A+ G R T ++ V AK + WYGPDRVKYLGPFS ++PSYL
Sbjct: 1 THHSSPSASEISGNGRIT---MRKAV----AKSAPSSSPWYGPDRVKYLGPFSGESPSYL 53
Query: 71 TGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEP 130
TGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E
Sbjct: 54 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEA 112
Query: 131 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND- 189
VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G P +GE D
Sbjct: 113 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDP 171
Query: 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL
Sbjct: 172 LYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 230
Query: 250 ENPVANNAWVYATKFVPG 267
+PV NNAW +AT FVPG
Sbjct: 231 ADPVNNNAWAFATNFVPG 248
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 180/267 (67%), Positives = 208/267 (77%), Gaps = 14/267 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL--------WYGPDRVKYLGP 61
A+++ +L ++ F G++ ++ +V G+A+ +M WYGPDRVKYLGP
Sbjct: 2 AAATMALSSSTFAGKAVKNLSSSSEV--QGDARVSMRKTAATKKVGSPWYGPDRVKYLGP 59
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
FS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIHGRWAMLGALGC+ PE+L +
Sbjct: 60 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLAR 119
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFK G+QIFSEGGL YLGNP+LVHAQSILA+ QVVLMG VEG+R+ G
Sbjct: 120 -NGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 178
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GE D LYPGG FDPLGLADD FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 P-LGEVVDPLYPGGS-FDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
PLENL DHL +PV NNAW +AT FVPG
Sbjct: 237 PLENLADHLADPVNNNAWAFATNFVPG 263
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 178/269 (66%), Positives = 207/269 (76%), Gaps = 15/269 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL----------WYGPDRVKYL 59
A+S+ +L + F G++ + A +V +G+ + TM + WYG DRVKYL
Sbjct: 2 AASTMALSSPAFAGKAVNLSPAASEV--LGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 120 AR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA 178
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G +GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 179 GNEPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 237
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGP+ENL DHL +PV NNAW +AT FVPG
Sbjct: 238 KGPIENLADHLADPVNNNAWAFATNFVPG 266
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 178/266 (66%), Positives = 205/266 (77%), Gaps = 5/266 (1%)
Query: 3 SIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
S + ++ + T+L+ + L + +N ++ K T +WYGPDR KYLGPF
Sbjct: 4 SAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTP-QSIWYGPDRPKYLGPF 62
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S TPSYLTGE+PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC PE+L K
Sbjct: 63 SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 121
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG +EG+RI G P
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGP 181
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 -LGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 240 IENLFDHIADPVANNAWAYATNFVPG 265
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 346 bits (887), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 187/271 (69%), Positives = 206/271 (76%), Gaps = 10/271 (3%)
Query: 5 MAAATASSSTSLR----ATPFLGQSRTTANALKDVVPMGN--AKYTMGNELWYGPDRVKY 58
MAAATA ST+L P SR ++ V M +K + +WYG DR K+
Sbjct: 1 MAAATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKF 60
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS +TPSYL GEF GDYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+TPE+
Sbjct: 61 LGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPEL 120
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L K V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 121 LAK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 179
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 180 AGGP-LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGPLENL DHL +PVANNAW YA PG+
Sbjct: 238 GKGPLENLNDHLADPVANNAWAYAPTSPPGT 268
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 346 bits (887), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 185/265 (69%), Positives = 202/265 (76%), Gaps = 14/265 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
A A S++ L + +T A K V P G+ WYGPDRVKYLGPFS
Sbjct: 3 QAVKAAPSNSELLGNGRVSMRKTAAP--KKVAPSGSP--------WYGPDRVKYLGPFSG 52
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
+ PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 53 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NG 111
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI G P +
Sbjct: 112 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP-L 170
Query: 185 GEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 171 GEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 229
Query: 244 NLLDHLENPVANNAWVYATKFVPGS 268
NL D L +PVANNAW YAT FVPG
Sbjct: 230 NLADRLADPVANNAWSYATNFVPGK 254
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 346 bits (887), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 45 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 104
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 105 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVLL 163
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 164 MGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 221
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 222 GFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPG 260
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 345 bits (886), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 58 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 117
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 118 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 176
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 177 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 234
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV+NNAW YAT FVPG
Sbjct: 235 GFFVQAIVTGKGPIENLADHLADPVSNNAWAYATNFVPG 273
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 345 bits (886), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 178/269 (66%), Positives = 207/269 (76%), Gaps = 15/269 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL----------WYGPDRVKYL 59
A+S+ +L + F G++ + A +V +G+ + TM + WYG DRVKYL
Sbjct: 2 AASTMALSSPAFAGKAVNLSPAASEV--LGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 120 AR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA 178
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G +GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 179 GNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 237
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGP+ENL DHL +PV NNAW +AT FVPG
Sbjct: 238 KGPIENLADHLADPVNNNAWAFATNFVPG 266
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 345 bits (886), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 174/219 (79%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLG
Sbjct: 47 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLG 106
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 107 ALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 165
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 166 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 223
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 224 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 262
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/269 (66%), Positives = 207/269 (76%), Gaps = 15/269 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL----------WYGPDRVKYL 59
A+S+ +L + F G++ + A +V +G+ + TM + WYG DRVKYL
Sbjct: 2 AASTMALSSPAFAGKAVKLSPAASEV--LGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 120 AR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA 178
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G +GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 179 GNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 237
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGP+ENL DHL +PV NNAW +AT FVPG
Sbjct: 238 KGPIENLADHLADPVNNNAWAFATNFVPG 266
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 58 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 117
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 118 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 176
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 177 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 234
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV+NNAW YAT FVPG
Sbjct: 235 GFFVQAIVTGKGPIENLADHLADPVSNNAWAYATNFVPG 273
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 185/273 (67%), Positives = 206/273 (75%), Gaps = 20/273 (7%)
Query: 5 MAAAT-ASSSTSLR--------ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA+T A SS+SL +TP LG R + +K WYGPDR
Sbjct: 1 MAASTMALSSSSLAGQAIKLAPSTPQLGVGRVSMRKTA-------SKTVTSGSPWYGPDR 53
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
VKYLGPFS + PSY TGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 54 VKYLGPFSGEPPSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 113
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG
Sbjct: 114 PELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEG 172
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+K+GRLAMFSMFGFFVQA
Sbjct: 173 YRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKHGRLAMFSMFGFFVQA 230
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 231 IVTGKGPLENLADHLADPVNNNAWAYATNFVPG 263
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 47 WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 106
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 107 ALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 165
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 166 MGAVEGYRIAGGP-LGEITDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 223
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 224 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 262
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 182/266 (68%), Positives = 204/266 (76%), Gaps = 6/266 (2%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGN--AKYTMGNELWYGPDRVKYLGPF 62
MAA+T + S+ A + S +T + + M +K WYGPDRVKYLGPF
Sbjct: 1 MAASTMALSSPSLAGQAIKLSPSTPDLSGGRISMRKTASKSVSSGSPWYGPDRVKYLGPF 60
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALG + PE+L +
Sbjct: 61 SGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGSVFPELLAR- 119
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGP 179
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 -LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 237
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
LENL DHL +PV NNAW YAT FVPG
Sbjct: 238 LENLADHLADPVNNNAWAYATNFVPG 263
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 188/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLG
Sbjct: 53 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 112
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 113 ALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 171
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 172 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 229
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 230 GFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 268
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 177/231 (76%), Positives = 190/231 (82%), Gaps = 4/231 (1%)
Query: 38 MGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRA 97
+ AK WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR
Sbjct: 39 VAKAKPASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 98
Query: 98 LEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQ 157
LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQ
Sbjct: 99 LEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 157
Query: 158 SILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKE 216
SILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE
Sbjct: 158 SILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKE 215
Query: 217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 266
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 183/270 (67%), Positives = 206/270 (76%), Gaps = 18/270 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKY 58
A+SS +L + G+ + ++ +G AK+TM WYGPDRVKY
Sbjct: 2 AASSMALTSPALAGKPVKLTPSSQE---LGVAKFTMRKGATTKKVASSGSPWYGPDRVKY 58
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 59 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 118
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI
Sbjct: 119 LSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 177
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 178 AGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 235
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 236 GKGPLENLADHLADPVNNNAWAFATNFVPG 265
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 186/273 (68%), Positives = 203/273 (74%), Gaps = 18/273 (6%)
Query: 5 MAAATASSSTSL---------RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA+ A SS SL A+ G+ R + G K WYGPDR
Sbjct: 1 MAASMALSSPSLVGKAVKLAPAASEVFGEGRVSMRKTA-----GKPKPVSSGSPWYGPDR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
VKYLGPFS + PSYLTGEF GDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 56 VKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 175 YRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHLADPVNNNAWAFATNFVPG 265
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 176/242 (72%), Positives = 195/242 (80%), Gaps = 15/242 (6%)
Query: 38 MGNAKYTMGNEL-----------WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLS 86
+G A++TM WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLS
Sbjct: 27 LGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLS 86
Query: 87 ADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLD 146
ADPE F++NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLD
Sbjct: 87 ADPETFSKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLD 145
Query: 147 YLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADD 205
YLGNP+LVHAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG FDPLGLA+D
Sbjct: 146 YLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAED 203
Query: 206 PVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFV 265
P FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FV
Sbjct: 204 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFV 263
Query: 266 PG 267
PG
Sbjct: 264 PG 265
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 184/271 (67%), Positives = 205/271 (75%), Gaps = 21/271 (7%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM------------GNELWYGPDRVK 57
ASS+ +L +T F G++ ++L G A+ TM WYGPDRV
Sbjct: 2 ASSTMALSSTAFAGKAVNVPSSL-----FGEARVTMRKTAAKAKPAAASGSPWYGPDRVL 56
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 57 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+R
Sbjct: 117 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR 175
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
I G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 176 IAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 233
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPG 267
TGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 234 TGKGPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 183/274 (66%), Positives = 204/274 (74%), Gaps = 18/274 (6%)
Query: 4 IMAAATASSSTSL---------RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPD 54
+ ++A A SS SL + LG+ R T G K + WYGPD
Sbjct: 1 MASSAMALSSPSLAGKAVKLNPTTSQILGEGRITMRKTA-----GKTKNVSSDSPWYGPD 55
Query: 55 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCI 114
RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 56 RVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 115
Query: 115 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG +E
Sbjct: 116 FPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIE 174
Query: 175 GFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
G+R+ G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQ
Sbjct: 175 GYRVAGGP-LGEVIDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 234 AIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
AIVTGKGPLENL DHL +PV NNAW +AT F PG
Sbjct: 233 AIVTGKGPLENLADHLADPVNNNAWAFATNFAPG 266
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 177/267 (66%), Positives = 207/267 (77%), Gaps = 14/267 (5%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDV--------VPMGNAKYTMGNELWYGPDRVKYLGP 61
++++++ + F GQ+ + + + L+ V V M + +WYGPDR KYLGP
Sbjct: 2 ATSAIQYSSFTGQTALKPSNDLLRKVGASNGGGRVIMRRTVKSTPQSIWYGPDRPKYLGP 61
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
FS TPSYLTGE+PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC PE+L K
Sbjct: 62 FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 121
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAG+QIFSEGGLDYLG+PNL+HAQSILA+ QVVLMG +EG+RI G
Sbjct: 122 -NGVKFGEAVWFKAGSQIFSEGGLDYLGSPNLIHAQSILAIWACQVVLMGFIEGYRIGGG 180
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GEG D LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 P-LGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
P+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 239 PIENLFDHIADPVANNAWAYATNFVPG 265
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 185/280 (66%), Positives = 206/280 (73%), Gaps = 20/280 (7%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMG----NAKYTM------------GNE 48
MAAA AS R GQ + ++ +G A+ TM +
Sbjct: 1 MAAAMASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDS 60
Query: 49 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIHGRWAML
Sbjct: 61 PWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAML 120
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+PNLVHAQSILA+L QV+
Sbjct: 121 GALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVI 179
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMG +EG+R+ G P +GE D +YPGG FDPLG ADDP FAELKVKE+KNGRLAMFSM
Sbjct: 180 LMGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
FGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 277
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIHGRWAMLG
Sbjct: 62 WYGPDRVLYLGPFSGEQPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLG 121
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+PNLVHAQSILA+L QV+L
Sbjct: 122 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVIL 180
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EG+R+ G P +GE D +YPGG FDPLG ADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 181 MGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELKNGRLAMFSMF 238
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 239 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 277
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 179/251 (71%), Positives = 195/251 (77%), Gaps = 9/251 (3%)
Query: 18 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD 77
A+ L + R T G K WYGPDRVKYLGPFS + PSYLTGEFPGD
Sbjct: 24 ASEILSEGRVTMRKTA-----GKPKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGD 78
Query: 78 YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGA 137
YGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+
Sbjct: 79 YGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGS 137
Query: 138 QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQY 196
QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG
Sbjct: 138 QIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS- 195
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NN
Sbjct: 196 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
Query: 257 AWVYATKFVPG 267
AW +AT FVPG
Sbjct: 256 AWSFATNFVPG 266
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 179/267 (67%), Positives = 204/267 (76%), Gaps = 5/267 (1%)
Query: 3 SIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
S + ++ + T+L+ + L + +N VV K T +WYGPDR KYLGPF
Sbjct: 4 SAIQHSSFAGQTALKPSNDLIRKVGASNGGGRVVMRRTVKSTP-QSIWYGPDRPKYLGPF 62
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S TPSYLTGE+PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC PE+L K
Sbjct: 63 SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 121
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG +EG+RI G P
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGP 181
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMF MFGFFVQAIVTGKGP
Sbjct: 182 -LGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFPMFGFFVQAIVTGKGP 239
Query: 242 LENLLDHLENPVANNAWVYATKFVPGS 268
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 240 IENLFDHIADPVANNAWAYATNFVPGK 266
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 204/267 (76%), Gaps = 13/267 (4%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MA +A ++A ++ S R+T + RT A K P + WYGP+R +LG
Sbjct: 1 MAFALAKSSARAAVSRRSTVKVEARRTVKPASKASTP---------DSFWYGPERPLFLG 51
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
F+ + PSYLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGCI PE+L
Sbjct: 52 AFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLG 111
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAGAQIF EGGLDYLGNPNLVHAQSILA+LG QV+LMG +EG+R+NG
Sbjct: 112 SY-GVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNG 170
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GEG D LYPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 171 GP-LGEGLDKLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 228
Query: 240 GPLENLLDHLENPVANNAWVYATKFVP 266
GPL+NL DHL NP NNA+ YATKF P
Sbjct: 229 GPLQNLSDHLANPGTNNAFAYATKFTP 255
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/220 (80%), Positives = 186/220 (84%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 47 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 106
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP LVHAQSILA+ QV+L
Sbjct: 107 ALGCVFPELLSR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQVIL 165
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 166 MGAVEGYRIGGGP-LGEVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 223
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 224 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 263
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIHGRWAMLG
Sbjct: 62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLG 121
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+PNLVHAQSILA+L QV+L
Sbjct: 122 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVIL 180
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EG+R+ G P +GE D +YPGG FDPLG ADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 181 MGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELKNGRLAMFSMF 238
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 239 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 277
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 177/230 (76%), Positives = 190/230 (82%), Gaps = 4/230 (1%)
Query: 40 NAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALE 99
AK WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LE
Sbjct: 7 KAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 66
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
VIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSI
Sbjct: 67 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI 125
Query: 160 LAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIK 218
LA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIK
Sbjct: 126 LAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIK 183
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
NGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 184 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 233
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 180/267 (67%), Positives = 205/267 (76%), Gaps = 14/267 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL--------WYGPDRVKYLGP 61
A+S+ +L + F GQ+ + + ++ MGN + +M WYGPDRVKYLGP
Sbjct: 2 AASTMALSSPSFAGQAVKLSPSAPEL--MGNGRISMKRTTRPVSSGSPWYGPDRVKYLGP 59
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
FS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAM GALGC+ PE+L +
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSR 119
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAG+QIF EGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 120 -NGVKFGEAVWFKAGSQIFQEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGG 178
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GE D +YPGG FDPLGLAD P FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 P-LGEVTDPIYPGGS-FDPLGLADVPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
PLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 PLENLADHLADPVNNNAWAYATNFVPG 263
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/231 (76%), Positives = 191/231 (82%), Gaps = 4/231 (1%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
G K + WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR L
Sbjct: 5 GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 64
Query: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
EVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQS
Sbjct: 65 EVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQS 123
Query: 159 ILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEI 217
ILA+ QV+LMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEI
Sbjct: 124 ILAIWACQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEI 181
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 182 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 232
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 178/256 (69%), Positives = 195/256 (76%), Gaps = 12/256 (4%)
Query: 21 FLGQSRTTANALKDVVPMGNAKYTM--------GNELWYGPDRVKYLGPFSAQTPSYLTG 72
F GQ + N L V G A+ M +WYG DR YLGPFS PSYLTG
Sbjct: 13 FSGQQLKSVNELSRKVGAGEARVQMMAPKKASTSGSIWYGADRPLYLGPFSGSPPSYLTG 72
Query: 73 EFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVW 132
EFPGDYGWDTAGLSADPE FA+NR LE+IH RWAMLGALGC+TPE+L K V F E VW
Sbjct: 73 EFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAK-NGVKFGEAVW 131
Query: 133 FKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LY 191
FKAG+QIF+EGGLDYLGNP+LVHAQSILA+ FQVVLMG VEG+R+ G P +GE D LY
Sbjct: 132 FKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAFQVVLMGAVEGYRVAGGP-LGEVEDPLY 190
Query: 192 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLEN 251
PGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +
Sbjct: 191 PGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLAD 249
Query: 252 PVANNAWVYATKFVPG 267
P NNAW YAT F PG
Sbjct: 250 PTVNNAWAYATNFTPG 265
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 186/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 58 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 117
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 118 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 176
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 177 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 234
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 235 GFFVQAIVTGKGPIENLTDHLADPVNNNAWAYATNFVPG 273
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/268 (67%), Positives = 203/268 (75%), Gaps = 14/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+S+ +L + F G++ + +V G + TM + WYG DRVKYLG
Sbjct: 2 AASTMALSSPAFAGKAVKLSPGASEV--FGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
+GE D LYPGG FDPLGLA DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 EGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 237
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW +AT FVPG
Sbjct: 238 GPLENLADHLADPVNNNAWAFATNFVPG 265
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/263 (68%), Positives = 204/263 (77%), Gaps = 8/263 (3%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDV--VPMGNA--KYTMGNELWYGPDRVKYLGPFSAQ 65
A+SS +L + G++ + + ++V V M K WYGPDRVKYLGPFS +
Sbjct: 2 AASSMALSSPSLAGKAVKLSPSTQEVGRVSMRKTVTKQASSGSPWYGPDRVKYLGPFSGE 61
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L + V
Sbjct: 62 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR-NGV 120
Query: 126 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
F E VWFKAG+ IFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P +G
Sbjct: 121 KFGEAVWFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP-LG 179
Query: 186 EGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 244
E D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 180 EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 238
Query: 245 LLDHLENPVANNAWVYATKFVPG 267
L DHL +PV +NAW YAT FVPG
Sbjct: 239 LADHLSDPVNSNAWAYATNFVPG 261
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 172/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIHGRWAMLG
Sbjct: 62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLG 121
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+PNLVHAQSILA+L QV+L
Sbjct: 122 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVIL 180
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EG+R+ G P +GE D +YPGG FDPLG ADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 181 MGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELKNGRLAMFSMF 238
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 239 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 277
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 172/220 (78%), Positives = 187/220 (85%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 47 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 106
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 107 ALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVIL 165
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 166 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 223
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 224 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 263
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 172/220 (78%), Positives = 187/220 (85%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIHGRWAMLG
Sbjct: 62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLG 121
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+PNLVHAQSILA+L QV+L
Sbjct: 122 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVIL 180
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EG+R+ G P +GE D +YPGG FDPLG ADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 181 MGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELKNGRLAMFSMF 238
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 239 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 278
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 181/271 (66%), Positives = 204/271 (75%), Gaps = 15/271 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALHQTTS-----FLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L K + F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG +EG+R+
Sbjct: 116 LSK-NGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRV 174
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P + EG D +YPGG FDPLGLADDP T AELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 175 GGGP-LDEGLDIIYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVT 232
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGP+ENL D L +P NNAW +AT F PGS
Sbjct: 233 GKGPVENLFDQLRDPGNNNAWAFATHFCPGS 263
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 171/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIHGRWAMLG
Sbjct: 62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLG 121
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+PNL+HAQSILA+L QV+L
Sbjct: 122 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLIHAQSILAILACQVIL 180
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EG+R+ G P +GE D +YPGG FDPLG ADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 181 MGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELKNGRLAMFSMF 238
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 239 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 277
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 175/232 (75%), Positives = 191/232 (82%), Gaps = 4/232 (1%)
Query: 38 MGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRA 97
+G K WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR
Sbjct: 5 VGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 64
Query: 98 LEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQ 157
LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQ
Sbjct: 65 LEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 123
Query: 158 SILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKE 216
SILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE
Sbjct: 124 SILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKE 181
Query: 217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
+KNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW YAT FVPG+
Sbjct: 182 LKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGN 233
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 182/264 (68%), Positives = 202/264 (76%), Gaps = 14/264 (5%)
Query: 7 AATASSSTSLRATPFLGQSRTTAN--ALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
A A + A+ +G R + A K V P G+ WYGPDRVKYLGPFS
Sbjct: 15 AGQAVKLSPSSASELMGNGRVSMRKAATKKVAPSGSP--------WYGPDRVKYLGPFSG 66
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
+ PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 67 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NG 125
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G P +
Sbjct: 126 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-L 184
Query: 185 GEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 185 GEVVDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 243
Query: 244 NLLDHLENPVANNAWVYATKFVPG 267
NL DHL +PV NNAW +AT FVPG
Sbjct: 244 NLADHLFDPVNNNAWAFATNFVPG 267
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/268 (67%), Positives = 203/268 (75%), Gaps = 14/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+S+ +L + F G++ + +V G + TM + WYG DRVKYLG
Sbjct: 2 AASTMALSSPAFAGKAVKLSPGASEV--FGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
+GE D LYPGG FDPLGLA DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 EGPLGEAEDLLYPGGS-FDPLGLAADPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 237
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW +AT FVPG
Sbjct: 238 GPLENLADHLADPVNNNAWAFATNFVPG 265
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 185/270 (68%), Positives = 206/270 (76%), Gaps = 15/270 (5%)
Query: 5 MAAATASSSTS------LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKY 58
MA AT + S+S ++ P LG++R T ++ V AK WYG DRV Y
Sbjct: 1 MATATMALSSSTFAGKAVKNLPALGEARIT---MRKTV--AKAKPVSSGSPWYGSDRVLY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 56 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 116 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 174
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 175 AGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 232
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 233 GKGPLENLADHLADPVNNNAWAFATNFVPG 262
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 183/268 (68%), Positives = 203/268 (75%), Gaps = 13/268 (4%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNA---------KYTMGNELWYGPDRVKYLG 60
ASS+ +L + G++ A + +++ +G K WYGPDRVKYLG
Sbjct: 2 ASSTMALSSPSLAGKAVKLAPSASELLGVGRVSMRKTGGRPKPVSSGSPWYGPDRVKYLG 61
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 62 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 121
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QV+LMG VEG+RI G
Sbjct: 122 R-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVLLMGAVEGYRIAG 180
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GP-LGEVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW Y T FV G
Sbjct: 239 GPLENLADHLADPVNNNAWAYPTNFVSG 266
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 174/219 (79%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 21 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 80
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 81 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVIL 139
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 140 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 197
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 198 GFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 236
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 180/269 (66%), Positives = 205/269 (76%), Gaps = 13/269 (4%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVV---------PMGNAKYTMGNELWYGPDRVKYLG 60
ASS+ +L + F G++ + D++ G K WYGPDRVKYLG
Sbjct: 2 ASSTMALSSPAFGGKAVKLNPSTSDMIGEGRISMRKSAGKPKNVSSGSPWYGPDRVKYLG 61
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 62 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 121
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G
Sbjct: 122 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 180
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENL DHL +PV NNAW +AT FVPG+
Sbjct: 239 GPLENLADHLADPVNNNAWNFATNFVPGN 267
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 174/220 (79%), Positives = 187/220 (85%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 21 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 80
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 81 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVIL 139
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 140 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 197
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 198 GFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 237
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 181/268 (67%), Positives = 203/268 (75%), Gaps = 9/268 (3%)
Query: 5 MAAATASSSTSLRATPFLG----QSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MAA SS+ + + P S +N + G + G+ WYGPDRVKYLG
Sbjct: 1 MAAMALSSTFTGKVVPLNAFTELSSSVRSNGRVTMRKSGKPAASSGSP-WYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D +YPGG FDPLGLADDP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 GP-LGEITDPIYPGGS-FDPLGLADDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 174/220 (79%), Positives = 187/220 (85%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 23 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 82
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 83 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVIL 141
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 142 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 199
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 200 GFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 239
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 174/220 (79%), Positives = 187/220 (85%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 23 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 82
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 83 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVIL 141
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 142 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 199
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 200 GFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 239
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 188/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLG
Sbjct: 16 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 75
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 76 ALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 134
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 135 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 192
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 193 GFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 231
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 173/256 (67%), Positives = 202/256 (78%), Gaps = 10/256 (3%)
Query: 16 LRATPFLGQ---SRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTG 72
+ A F+G S+ +++ G+A + +WYGPDR ++LGPFS TPSYLTG
Sbjct: 4 VSAKTFVGTQVASKKMVTSMRRTQKKGSAP----DSVWYGPDRPQFLGPFSGDTPSYLTG 59
Query: 73 EFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVW 132
EFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGC+TPE+L K+ V F E VW
Sbjct: 60 EFPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVW 119
Query: 133 FKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LY 191
FKAG+QIF EGGLDYLGN NLVHAQSILA+LG QVVLMG +E +R+NG P +GEG D LY
Sbjct: 120 FKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRVNGGP-LGEGLDPLY 178
Query: 192 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLEN 251
PG + FDPLGLADDP TFAELK+KEIKNGRLAMFSMFGFFVQA+VTGKGP+EN +H+ +
Sbjct: 179 PGDK-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFFVQAVVTGKGPIENWAEHVAD 237
Query: 252 PVANNAWVYATKFVPG 267
P + NAW YATKFVPG
Sbjct: 238 PFSVNAWNYATKFVPG 253
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 182/271 (67%), Positives = 204/271 (75%), Gaps = 21/271 (7%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM------------GNELWYGPDRVK 57
ASS+ +L +T F G++ ++L G A+ TM WYGPDRV
Sbjct: 2 ASSTMALSSTAFAGKAVNVPSSL-----FGEARVTMRKTAAKAKPAASSGSPWYGPDRVL 56
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGP S PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 57 YLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG +EG+R
Sbjct: 117 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYR 175
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 176 VAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 233
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPG 267
TGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 234 TGKGPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 180/265 (67%), Positives = 202/265 (76%), Gaps = 10/265 (3%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMG------NAKYTMGNELWYGPDRVKYLGPFS 63
AS++ +L + F G++ + + ++ G K WYGPDRV YLGP S
Sbjct: 2 ASTTMALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKTTKPVPSGSPWYGPDRVLYLGPLS 61
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
+ PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR-N 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP- 179
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 180 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 238
Query: 243 ENLLDHLENPVANNAWVYATKFVPG 267
ENL DHL +PV NNAW YAT FVPG
Sbjct: 239 ENLADHLADPVNNNAWAYATNFVPG 263
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 179/267 (67%), Positives = 201/267 (75%), Gaps = 13/267 (4%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM--------GNELWYGPDRVKYLGP 61
A+S+ +L +T F GQ N L V G A+ M +WYG DR YLGP
Sbjct: 2 ATSTAALTST-FSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGP 60
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
FS PSYL+GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+TPE+L K
Sbjct: 61 FSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAK 120
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAG+QIF+EGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G
Sbjct: 121 -NGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 179
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 P-LGEVEDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
P+ENL DHL +P NNAW YAT F PG
Sbjct: 238 PIENLSDHLADPAVNNAWAYATNFTPG 264
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 172/219 (78%), Positives = 186/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 47 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 106
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 107 ALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVIL 165
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 166 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 223
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL PV NNAW YAT FVPG
Sbjct: 224 GFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPG 262
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 172/219 (78%), Positives = 186/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 58 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 117
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 118 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 176
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 177 MGAVEGYRIAGGP-LGEITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAMFSMF 234
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 235 GFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPG 273
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 343 bits (879), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 171/219 (78%), Positives = 186/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 59 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 118
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 119 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVIL 177
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 178 MGAVEGYRIAGGP-LGEITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAMFSMF 235
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 236 GFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPG 274
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 343 bits (879), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 171/219 (78%), Positives = 186/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 58 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 117
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 118 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVIL 176
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 177 MGAVEGYRIAGGP-LGEITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAMFSMF 234
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 235 GFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPG 273
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 343 bits (879), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 182/271 (67%), Positives = 204/271 (75%), Gaps = 20/271 (7%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM------------GNELWYGPDRVK 57
ASS+ +L +T F G++ ++ G A+ TM WYGPDRV
Sbjct: 2 ASSTMALSSTAFAGKAVNVPSSSA----FGEARVTMRKTAAKAKPAAASGSPWYGPDRVL 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+R
Sbjct: 118 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR 176
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
I G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 177 IAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 234
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPG 267
TGKGPLENL DH+ +PV NNAW YAT FVPG
Sbjct: 235 TGKGPLENLADHIADPVNNNAWAYATNFVPG 265
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 342 bits (878), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 201/267 (75%), Gaps = 14/267 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM--------GNELWYGPDRVKYLGP 61
A+S+ +L + F G + D+ +G + +M WYGPDRV YLGP
Sbjct: 2 AASTMALSSPSFAGTTVKLGPNASDI--LGGGRVSMRKTGFKAPSGSPWYGPDRVLYLGP 59
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
S PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 60 LSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 119
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 120 -NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGG 178
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 P-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
PLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 PLENLADHLADPVNNNAWAYATNFVPG 263
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 342 bits (878), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 181/269 (67%), Positives = 205/269 (76%), Gaps = 17/269 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL----------WYGPDRVKYL 59
ASS+ +L + F G++ A DV +G+ + TM + WYG DRVKYL
Sbjct: 2 ASSTMALSSPAFAGKA--VKPAASDV--LGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 57
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 117
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 118 AR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA 176
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G +GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 177 GDGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 236 KGPLENLADHLADPVNNNAWAFATNFVPG 264
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 342 bits (878), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 185/272 (68%), Positives = 205/272 (75%), Gaps = 17/272 (6%)
Query: 2 ASIMAAATAS-SSTSLR----ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRV 56
AS MA ++ S + T+++ A+ LG R + P G+ WYGPDRV
Sbjct: 3 ASTMALSSPSLAGTAVKLGPNASQILGGGRVSMRKTGFKAPSGSP--------WYGPDRV 54
Query: 57 KYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITP 116
YLGP S PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct: 55 LYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
Query: 117 EVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGF 176
E+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+
Sbjct: 115 ELLSR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGY 173
Query: 177 RINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI 235
RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAI
Sbjct: 174 RIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 231
Query: 236 VTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
VTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 232 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 263
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/219 (77%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 54 WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 113
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 114 ALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVIL 172
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 173 MGAVEGYRIAGGP-LGEITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAMFSMF 230
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW +AT FVPG
Sbjct: 231 GFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPG 269
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 171/219 (78%), Positives = 186/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 121
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+PNLVHAQSILA+ QV+L
Sbjct: 122 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQVIL 180
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EG+R+ G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 181 MGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFAELKVKELKNGRLAMFSMF 238
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 239 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 277
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 178/269 (66%), Positives = 205/269 (76%), Gaps = 15/269 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL----------WYGPDRVKYL 59
A+S+ +L + F G++ + A +V +G+ + TM + WYG +RVKYL
Sbjct: 2 AASTMALSSPAFAGKAVKLSPAASEV--LGSGRVTMRKTVAKPKGPSGSPWYGSERVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR L+VIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 120 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA 178
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G +GE D LYPGG FDPLGLA DP FAELKVKEIKNGRLAMFSMFGFF QAIVTG
Sbjct: 179 GDGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFAQAIVTG 237
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 238 KGPLENLADHLADPVNNNAWAFATNFVPG 266
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 186/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FARN LEVIH RWAMLG
Sbjct: 47 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWAMLG 106
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 107 ALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 165
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 166 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 223
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 224 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 262
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 174/226 (76%), Positives = 189/226 (83%), Gaps = 4/226 (1%)
Query: 44 TMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHG 103
T+ + WYGPDRVKYLGPFS + PSYL+GEFPGDYGWDTAGLSADPE FA+NR LEVIH
Sbjct: 10 TVSSSPWYGPDRVKYLGPFSGEAPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 69
Query: 104 RWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVL 163
RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+
Sbjct: 70 RWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW 128
Query: 164 GFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRL 222
QV+LMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRL
Sbjct: 129 ATQVILMGAVEGYRIAGGP-LGEVEDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRL 186
Query: 223 AMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
AMFSMFGFFV AIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 187 AMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 232
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 182/265 (68%), Positives = 204/265 (76%), Gaps = 13/265 (4%)
Query: 4 IMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
+MA A S+S++L G++R T ++ + G+ WYG DRV YLGP S
Sbjct: 12 VMARAAPSTSSAL-----FGEARIT---MRKTAAKPKPAASSGSP-WYGADRVLYLGPLS 62
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
+ PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 63 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-N 121
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G P
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP- 180
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 LGEVVDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 243 ENLLDHLENPVANNAWVYATKFVPG 267
ENL DHL +PV NNAW YAT FVPG
Sbjct: 240 ENLADHLADPVNNNAWAYATNFVPG 264
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 186/273 (68%), Positives = 203/273 (74%), Gaps = 19/273 (6%)
Query: 5 MAAATASSSTSL---------RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAAAT + S+ RATPF G+ R T K + WYG DR
Sbjct: 1 MAAATMALSSPAMAGTPVKVSRATPF-GEGRITMRKTA-----AKPKVSASGSPWYGSDR 54
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 55 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 114
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 115 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 173
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 174 YRVAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 232 IVTGKGPLENLADHLSDPVNNNAWAFATNFVPG 264
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 180/269 (66%), Positives = 209/269 (77%), Gaps = 17/269 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM----------GNELWYGPDRVKYL 59
A+S+ +L ++ +G++ + + D+V MG + TM WYGPDRVKYL
Sbjct: 2 AASTMALSSSSMVGKAIKLSPSTPDLV-MG--RITMRKTTTKKTAPSGSQWYGPDRVKYL 58
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 59 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 118
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI
Sbjct: 119 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA 177
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLA+DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 178 GGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPL+NL DH+ +PV NNAW +AT FVPG
Sbjct: 236 KGPLKNLADHIADPVNNNAWAFATNFVPG 264
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 200/267 (74%), Gaps = 14/267 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM--------GNELWYGPDRVKYLGP 61
A+S+ +L + F G D+ +G + +M WYGPDRV YLGP
Sbjct: 2 AASTMALSSPSFAGTXVKLGPNASDI--LGGGRVSMRKTGFKAPSGSPWYGPDRVLYLGP 59
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
S PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 60 LSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 119
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 120 -NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGG 178
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 P-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
PLENL DHL +PV NNAW YAT FVPG
Sbjct: 237 PLENLADHLADPVNNNAWAYATNFVPG 263
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/219 (78%), Positives = 186/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 58 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLG 117
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 118 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 176
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMF
Sbjct: 177 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 234
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 235 GFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPG 273
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 178/268 (66%), Positives = 203/268 (75%), Gaps = 14/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLG 60
A+S+ +L + G++ + A +V G + TM WYG DRVKYLG
Sbjct: 2 AASTMALSSPALTGKAVKLSPAASEV--FGTGRITMRKASKPTGPSGSPWYGSDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V+F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G
Sbjct: 120 R-NGVEFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
+GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 DGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 237
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW +AT FVPG
Sbjct: 238 GPLENLADHLADPVNNNAWAFATNFVPG 265
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 180/271 (66%), Positives = 205/271 (75%), Gaps = 21/271 (7%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM------------GNELWYGPDRVK 57
ASS+ +L +T F G++ ++L G A+ TM WYGPDRV
Sbjct: 2 ASSTMALSSTAFAGKAVNVPSSL-----FGEARVTMRKTAAKAKPAASSGSPWYGPDRVL 56
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 57 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG +EG+R
Sbjct: 117 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYR 175
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GE D LYPGG FDPLGLADDP FA++KVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 176 VAGGP-LGEVVDPLYPGGT-FDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIV 233
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPG 267
TGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 234 TGKGPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 179/265 (67%), Positives = 201/265 (75%), Gaps = 10/265 (3%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMG------NAKYTMGNELWYGPDRVKYLGPFS 63
AS++ +L + F G++ + + ++ G K WYGPDRV YLGP S
Sbjct: 2 ASTTMALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKTTKPVPSGSPWYGPDRVLYLGPLS 61
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
+ PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR-N 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP- 179
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+GE D LYPGG FDPLG ADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 180 LGEVTDPLYPGGS-FDPLGFADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 238
Query: 243 ENLLDHLENPVANNAWVYATKFVPG 267
ENL DHL +PV NNAW YAT FVPG
Sbjct: 239 ENLADHLADPVNNNAWAYATNFVPG 263
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 186/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 23 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 82
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 83 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVIL 141
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAE KVKE+KNGRLAMFSMF
Sbjct: 142 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAEXKVKELKNGRLAMFSMF 199
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 200 GFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 238
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/252 (71%), Positives = 195/252 (77%), Gaps = 10/252 (3%)
Query: 17 RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPG 76
RATPF G+ R T K + WYG DRV YLGP S + PSYLTGEFPG
Sbjct: 21 RATPF-GEGRITMRKTA-----AKPKVSASGSPWYGSDRVLYLGPLSGEPPSYLTGEFPG 74
Query: 77 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAG 136
DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG
Sbjct: 75 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAG 133
Query: 137 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQ 195
+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+ G P +GE D LYPGG
Sbjct: 134 SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEIVDPLYPGGS 192
Query: 196 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVAN 255
FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV N
Sbjct: 193 -FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNN 251
Query: 256 NAWVYATKFVPG 267
NAW +AT FVPG
Sbjct: 252 NAWAFATNFVPG 263
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 183/273 (67%), Positives = 203/273 (74%), Gaps = 18/273 (6%)
Query: 5 MAAATASSST---------SLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAAAT S S+ ++ + G++R T AK + WYG DR
Sbjct: 1 MAAATMSLSSPAFAGKAVKNVSLSALFGEARVTMRKTT-----AKAKQVASSSPWYGADR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 175 YRIAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHITDPVNNNAWAFATNFVPG 265
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 171/219 (78%), Positives = 186/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PS+LTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 58 WYGPDRVLYLGPFSGEPPSHLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 117
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 118 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 176
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 177 MGAVEGYRIAGGP-LGEITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAMFSMF 234
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 235 GFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPG 273
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 172/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 51 YGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA 110
YGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 63
Query: 111 LGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLM 170
LGC+ PE+L K + F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLM
Sbjct: 64 LGCVFPEILSK-NGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLM 122
Query: 171 GLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
G +EG+R+ G P +GEG D +YPGG FDPLGLADDP T AELKVKE+KNGRLAMFSMFG
Sbjct: 123 GFIEGYRVGGGP-LGEGLDIIYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAMFSMFG 180
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FFVQAIVTGKGP+ENL DH+ +PV NNAW +AT F PGS
Sbjct: 181 FFVQAIVTGKGPVENLFDHIADPVNNNAWAFATNFAPGS 219
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/262 (68%), Positives = 200/262 (76%), Gaps = 18/262 (6%)
Query: 9 TASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS-AQTP 67
+A STS+R TP + VVP + WYGPDR K+LGPFS TP
Sbjct: 7 SAVRSTSVRPTP-------VGSRAARVVPRAAIE-------WYGPDRPKFLGPFSEGDTP 52
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127
+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGC+TPE+L K+ V F
Sbjct: 53 AYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSF 112
Query: 128 KEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEG 187
E VWFKAGAQIF+EGGL+YLGN NLVHAQSI+A L FQVV+MGL E +R NG P +GEG
Sbjct: 113 GEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGP-LGEG 171
Query: 188 ND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 246
D L+PGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL
Sbjct: 172 LDPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLS 230
Query: 247 DHLENPVANNAWVYATKFVPGS 268
DHL NP A NA+ YATKF P +
Sbjct: 231 DHLANPSAVNAFAYATKFTPSA 252
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 184/270 (68%), Positives = 203/270 (75%), Gaps = 12/270 (4%)
Query: 5 MAAAT---ASSSTSLRATPFLGQSRTTAN---ALKDVVPMGNAKYTMGNELWYGPDRVKY 58
MAAAT +SSS + +A S T N ++ V AK WYGPDRVKY
Sbjct: 1 MAAATMALSSSSFAGKAVNVPSSSEITRNGKVTMRKTVT--KAKPVSSGSPWYGPDRVKY 58
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS + PSYLTGEFPGDYGWDTAGLSADP FA+NR LEVIH RW MLGALGC+ PE+
Sbjct: 59 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPEL 118
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
+ V F E VWFKAG+QIF EGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+
Sbjct: 119 FAR-NGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLADDP FAEL+VKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 178 AGGP-LGEVIDPLYPGGS-FDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVT 235
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 236 GKGPLENLADHLADPVNNNAWAFATNFVPG 265
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 176/253 (69%), Positives = 194/253 (76%), Gaps = 12/253 (4%)
Query: 18 ATPFLGQSRTTAN--ALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP 75
+T +G R T K VP G+ WYGPDRVKYLGPFS + PSYLTGEFP
Sbjct: 23 STQDIGVGRVTMRKATTKKSVPSGSP--------WYGPDRVKYLGPFSGEAPSYLTGEFP 74
Query: 76 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKA 135
GDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKA
Sbjct: 75 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKA 133
Query: 136 GAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQ 195
G+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI G P + LYPGG
Sbjct: 134 GSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPPGEVVDPLYPGGS 193
Query: 196 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVAN 255
FDPLGLA+DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV N
Sbjct: 194 -FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 252
Query: 256 NAWVYATKFVPGS 268
NAW YAT F PG
Sbjct: 253 NAWAYATNFAPGK 265
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 178/268 (66%), Positives = 202/268 (75%), Gaps = 14/268 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLG 60
A+S+ +L + G++ + A +V G + TM WYG DRVKYLG
Sbjct: 2 AASTMALSSPALTGKAVKLSPAASEV--FGTGRITMRKASKPTGPSGSPWYGSDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 178
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
+GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 DGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 237
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW +AT FVPG
Sbjct: 238 GPLENLADHLADPVNNNAWAFATNFVPG 265
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 178/266 (66%), Positives = 200/266 (75%), Gaps = 9/266 (3%)
Query: 3 SIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
S+ +A S ++ ++ G++R T AK WYG DRV YLGP
Sbjct: 7 SLSSAFAGKSVKNVASSALFGEARVTMRKTA-----AKAKQVSSGSPWYGADRVLYLGPL 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 62 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G P
Sbjct: 121 NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
LENL DHL +PV NNAW +AT FVPG
Sbjct: 239 LENLADHLADPVNNNAWAFATNFVPG 264
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 178/269 (66%), Positives = 205/269 (76%), Gaps = 15/269 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL----------WYGPDRVKYL 59
A+S+ +L + F G++ + A +V +G+ + TM + WYG +RVKYL
Sbjct: 2 AASTMALSSPAFAGKAVKLSPAASEV--LGSGRVTMRKTVAKPKGPSGSPWYGSERVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTG+FPGDYGWDTAGLSA PE F RNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGEPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 120 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVP 178
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G +GE D LYPGG FDPLGLA DPV FAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 179 GDGPLGEAEDLLYPGGS-FDPLGLATDPVAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 238 KGPLENLADHLADPVNNNAWAFATNFVPG 266
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 180/269 (66%), Positives = 205/269 (76%), Gaps = 16/269 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM----------GNELWYGPDRVKYL 59
A+S+ +L + F G + A + ++ G+ + +M WYGPDRVKYL
Sbjct: 2 AASTMALSSPSFAGMAVKVAPSSSEL--FGSGRISMRKTGKKPAASSGSPWYGPDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI
Sbjct: 120 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 178
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLA+DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 179 GGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPLENL D L +PV NNAW YAT FVPG
Sbjct: 237 KGPLENLADPLADPVNNNAWAYATNFVPG 265
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 184/273 (67%), Positives = 202/273 (73%), Gaps = 18/273 (6%)
Query: 5 MAAATASSST---------SLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA T S S+ +L ++ G++R T V K WYG DR
Sbjct: 1 MAATTMSLSSPAFAGKAVKNLPSSSLFGEARVTMRKTAAKV-----KQVASGSPWYGSDR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 175 YRIAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHLSDPVNNNAWAFATNFVPG 265
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/219 (77%), Positives = 185/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 121
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+ QV+L
Sbjct: 122 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVIL 180
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EG+R+ G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 181 MGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 238
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 239 GFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPG 277
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 172/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLG
Sbjct: 16 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 75
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALG + PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 76 ALGSVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 134
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 135 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 192
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 193 GFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 231
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 176/264 (66%), Positives = 202/264 (76%), Gaps = 15/264 (5%)
Query: 15 SLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL----------WYGPDRVKYLGPFSA 64
+L + F G++ + A +V +G+ + TM + WYG DRVKYLGPFS
Sbjct: 2 ALSSPAFAGKAVNLSPAASEV--LGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSG 59
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
+ PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR-NG 118
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G +
Sbjct: 119 VKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 178
Query: 185 GEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 179 GEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 237
Query: 244 NLLDHLENPVANNAWVYATKFVPG 267
NL DHL +PV NNAW +AT FVPG
Sbjct: 238 NLADHLADPVTNNAWAFATNFVPG 261
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 170/253 (67%), Positives = 198/253 (78%), Gaps = 4/253 (1%)
Query: 16 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP 75
+ A F+G S+ + + K + + +WYGPDR ++LGPFS PSYLTGEFP
Sbjct: 4 ISANTFVG-SKPVNKKMVTSMRRTQKKSSAPDSVWYGPDRPQFLGPFSGDCPSYLTGEFP 62
Query: 76 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKA 135
GDYGWDTAGLSADPE F R R E+IH RWAMLGALGC+TPE+L K+ V F E VWFKA
Sbjct: 63 GDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKA 122
Query: 136 GAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGG 194
G+QIF EGGLDYLGN NLVHAQSILA+LG QVVLMG +E +R+NG P +GEG D LYPG
Sbjct: 123 GSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRVNGGP-LGEGLDPLYPGD 181
Query: 195 QYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVA 254
+ FDPLGLADDP TFAELK+KEIKNGRLAMFSMFGF+VQA+VTGKGP+EN +H+ NP +
Sbjct: 182 K-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTGKGPIENWAEHVANPFS 240
Query: 255 NNAWVYATKFVPG 267
NAW YATKFVPG
Sbjct: 241 VNAWNYATKFVPG 253
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 181/267 (67%), Positives = 201/267 (75%), Gaps = 20/267 (7%)
Query: 13 STSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKYLGP 61
+ L +T F G++ ++L G A+ TM WYGPDRV YLGP
Sbjct: 1 TMGLSSTAFAGKAVNVPSSL-----FGEARVTMRKTAAKPKPAASGSPWYGPDRVLYLGP 55
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 56 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 115
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G
Sbjct: 116 -NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG 174
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 175 P-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 232
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
PLENL DHL +PV NNAW YAT FVPG
Sbjct: 233 PLENLADHLADPVNNNAWAYATNFVPG 259
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 182/271 (67%), Positives = 204/271 (75%), Gaps = 19/271 (7%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKY 58
A ++ +L + +G+ TT+ +DV G + TM WYG DRV Y
Sbjct: 2 AGATMALTSRALVGKPATTST--RDV--FGEGRITMRKTAAKPKPAASGSPWYGADRVLY 57
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 58 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 117
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+R+
Sbjct: 118 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRV 176
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 177 AGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 235 GKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 182/273 (66%), Positives = 202/273 (73%), Gaps = 18/273 (6%)
Query: 5 MAAATASSST---------SLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAAAT S S+ ++ + G++R T AK + WYG DR
Sbjct: 1 MAAATMSLSSPAFAGKAVKNVSLSALFGEARVTMRKTT-----AKAKQVASSSPWYGADR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ Q VLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQAVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 175 YRIAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHITDPVNNNAWAFATNFVPG 265
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 176/264 (66%), Positives = 201/264 (76%), Gaps = 15/264 (5%)
Query: 15 SLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL----------WYGPDRVKYLGPFSA 64
+L + F G++ + A +V +G+ + TM WYG DRVKYLGPFS
Sbjct: 2 ALSSPAFAGKAVKLSPAASEV--LGSGRVTMRKTTAKPKGPSGSPWYGSDRVKYLGPFSG 59
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
+ PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR-NG 118
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G +
Sbjct: 119 VKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 178
Query: 185 GEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 179 GEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 237
Query: 244 NLLDHLENPVANNAWVYATKFVPG 267
NL DHL +PV NNAW +AT FVPG
Sbjct: 238 NLADHLADPVTNNAWAFATNFVPG 261
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 183/273 (67%), Positives = 204/273 (74%), Gaps = 18/273 (6%)
Query: 5 MAAATASSSTS------LRATP---FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAAAT S S+S ++ P LG++R T AK WYG DR
Sbjct: 1 MAAATMSLSSSTFAGKAVKNVPSLALLGEARVTMRKTA-----AKAKQVSSGSPWYGADR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 175 YRVAGGP-LGEIVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHIADPVNNNAWAFATNFVPG 265
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 181/270 (67%), Positives = 203/270 (75%), Gaps = 21/270 (7%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MA+I+ +A SS + T A+ VVP + WYGPDR K+LG
Sbjct: 1 MAAIVKSAARSSVRPV----------TVASRAARVVPRAAIE-------WYGPDRPKFLG 43
Query: 61 PFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
PFS TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGC+TPE+L
Sbjct: 44 PFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELL 103
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
K+ V F E VWFKAGAQIF+EGGL+YLGN NLVHAQSI+A L FQVV+MGL E +R N
Sbjct: 104 SKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRAN 163
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GEG D L+PGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 164 GGP-LGEGLDPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 221
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGP+ENL DHL NP A NA+ YATKF P +
Sbjct: 222 KGPIENLSDHLANPSAVNAFAYATKFTPSA 251
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 186/272 (68%), Positives = 201/272 (73%), Gaps = 16/272 (5%)
Query: 5 MAAAT-ASSSTSLRATP------FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVK 57
MAAAT A +S +L P G+ R T G K WYG DRV
Sbjct: 1 MAAATMALTSRALVGKPATSTRDVFGEGRITMRKTA-----GKPKPAASGSPWYGADRVL 55
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGP S Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 56 YLGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+R
Sbjct: 116 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR 174
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
I G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 175 IAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 232
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 233 TGKGPVENLADHLADPVNNNAWAYATNFVPGK 264
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 177/267 (66%), Positives = 206/267 (77%), Gaps = 14/267 (5%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL--------WYGPDRVKYLGP 61
A+S+ +L + G++ A + ++ GN + +M + WYGPDRVKYLGP
Sbjct: 2 AASTMALSSPALAGKAVKVAPSSSEL--FGNGRVSMRKTVKAPVSDSPWYGPDRVKYLGP 59
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
FS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 60 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 119
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSIL++ QV+LMG VEG+R+ G
Sbjct: 120 -NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGG 178
Query: 182 PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
P +GE D LYPGG FDPLGLA+DP AELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 P-LGEIVDPLYPGGS-FDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 241 PLENLLDHLENPVANNAWVYATKFVPG 267
PLENL DHL +PV NNAW +AT FVPG
Sbjct: 237 PLENLADHLADPVNNNAWAFATNFVPG 263
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 186/268 (69%), Positives = 200/268 (74%), Gaps = 13/268 (4%)
Query: 5 MAAAT-ASSSTSLR---ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MAAAT A SS +L A G+ R T K WYG DRV YLG
Sbjct: 1 MAAATMALSSPALAGKAAAKVFGEGRITMRK-----SAAKPKPAASGSPWYGADRVLYLG 55
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
P S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 56 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 115
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G
Sbjct: 116 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 174
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 175 GP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 232
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 233 GPLENLADHLADPVNNNAWAYATNFVPG 260
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 183/273 (67%), Positives = 202/273 (73%), Gaps = 18/273 (6%)
Query: 5 MAAATASSST---------SLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA T S S+ +L ++ G++R T AK WYG DR
Sbjct: 1 MAATTMSLSSPAFAGKAVKNLPSSALFGEARVTMRKTA-----AKAKPVPSGSPWYGADR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 175 YRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHITDPVNNNAWAFATNFVPG 265
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 183/275 (66%), Positives = 206/275 (74%), Gaps = 21/275 (7%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGP 53
MAAAT + S+S F G++ + + ++ GN ++TM WYGP
Sbjct: 1 MAAATMALSSST----FAGKAVKLSPSSSEIT--GNGRFTMRKTAAKAKPVSSGSPWYGP 54
Query: 54 DRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC 113
DRVKYLGPFS + PSYLTGE PGDYGWDTAGLSADPE FA+NR LEVIH RWA+L LGC
Sbjct: 55 DRVKYLGPFSGEAPSYLTGEKPGDYGWDTAGLSADPETFAKNRELEVIHCRWAILERLGC 114
Query: 114 ITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV 173
+ PE+L + V F E VWFK G+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG V
Sbjct: 115 VFPELLSR-NGVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV 173
Query: 174 EGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
EG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFV
Sbjct: 174 EGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 231
Query: 233 QAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
QAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 232 QAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 266
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 339 bits (870), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 182/268 (67%), Positives = 199/268 (74%), Gaps = 10/268 (3%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MA A + + RA PF G+ R T G K + WYG DRV YLG
Sbjct: 7 MALSSPAMAGTPVKASRAAPF-GEGRITMRKTA-----GKPKVAASSSPWYGSDRVLYLG 60
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
P S PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 61 PLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+ G
Sbjct: 121 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 180 GP-LGEIVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 237
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW +AT FVPG
Sbjct: 238 GPLENLADHLADPVNNNAWAFATNFVPG 265
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 339 bits (870), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 179/268 (66%), Positives = 201/268 (75%), Gaps = 21/268 (7%)
Query: 13 STSLRATPFLGQSRTTANALKDVVPMGNAKYTM------------GNELWYGPDRVKYLG 60
+ +L +T F G++ ++L G A+ TM WYGPDRV YLG
Sbjct: 42 TMALSSTAFAGKAVNVPSSL-----FGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLG 96
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
P S PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 97 PLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 156
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG +EG+R+ G
Sbjct: 157 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAG 215
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 216 GP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 273
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPG 267
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 274 GPLENLADHLADPVNNNAWAYATNFVPG 301
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 339 bits (870), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 170/221 (76%), Positives = 186/221 (84%), Gaps = 4/221 (1%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPFS TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 33 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 92
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K+ V F E VWFKAGAQIF+EGGL+YLGN NLVHAQSI+A L FQVV
Sbjct: 93 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVV 152
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
+MGL E +R NG P +GEG D L+PGG FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 153 VMGLAEAYRANGGP-LGEGLDPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSM 210
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP+ENL DHL NP A NA+ YATKF P +
Sbjct: 211 FGFFVQAIVTGKGPIENLSDHLANPSAVNAFAYATKFTPSA 251
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 339 bits (870), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 182/273 (66%), Positives = 202/273 (73%), Gaps = 14/273 (5%)
Query: 1 MASIMAAATASS-----STSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MA+ A ++SS L ++ G++R T AK + WYG DR
Sbjct: 1 MATTAMALSSSSFAGKAVKDLPSSALFGEARVTMRKTA-----AKAKPVSSSSPWYGSDR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 175 YRVAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHLADPVNNNAWAFATNFVPG 265
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 339 bits (870), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 182/273 (66%), Positives = 202/273 (73%), Gaps = 18/273 (6%)
Query: 5 MAAATASSSTS---------LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA T S S+S L ++ G++R T AK WYG DR
Sbjct: 1 MAATTMSLSSSAFAGKAVKNLPSSALFGEARVTMRKTA-----AKAKPVSSGSPWYGSDR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LE+IH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 175 YRVAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHLADPVNNNAWAFATNFVPG 265
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 339 bits (870), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 169/219 (77%), Positives = 184/219 (84%), Gaps = 3/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLG
Sbjct: 49 WYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLG 108
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 109 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVIL 167
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+R+ G +GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMF
Sbjct: 168 MGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMF 226
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 227 GFFVQAIVTGKGPLENLSDHLADPVNNNAWAFATNFVPG 265
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 339 bits (869), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 170/221 (76%), Positives = 186/221 (84%), Gaps = 4/221 (1%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPFS TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 33 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 92
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K+ V F E VWFKAGAQIF+EGGL+YLGN NLVHAQSI+A L FQVV
Sbjct: 93 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVV 152
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
+MGL E +R NG P +GEG D L+PGG FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 153 VMGLAEAYRANGGP-LGEGLDPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSM 210
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP+ENL DHL NP A NA+ YATKF P +
Sbjct: 211 FGFFVQAIVTGKGPIENLSDHLANPSAVNAFAYATKFTPSA 251
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 339 bits (869), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 180/265 (67%), Positives = 203/265 (76%), Gaps = 13/265 (4%)
Query: 4 IMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
+MA A S+S++L G++R T ++ + G+ WYG DRV YLGP S
Sbjct: 12 VMARAAPSTSSAL-----FGEARIT---MRKTAAKPKPAASSGSP-WYGADRVLYLGPLS 62
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
+ PSYLTGEFPGDYGWDTAGLSADPE FA+NR LE+IH RWAMLGALGC+ PE+L +
Sbjct: 63 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLAR-N 121
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G P
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP- 180
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+GE D LYPGG FDPLGLADDP FAELKVKEIK GRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 LGEVVDPLYPGGA-FDPLGLADDPEAFAELKVKEIKKGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 243 ENLLDHLENPVANNAWVYATKFVPG 267
ENL DHL +PV NNAW YAT FVPG
Sbjct: 240 ENLADHLADPVNNNAWAYATNFVPG 264
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 339 bits (869), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 182/273 (66%), Positives = 202/273 (73%), Gaps = 18/273 (6%)
Query: 5 MAAATASSSTSLRA---------TPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA T S S+S A + G++R T AK + WYG DR
Sbjct: 1 MAATTMSLSSSTFAGKAVKNVPLSALFGEARVTMRKTA-----AKAKQLSSSNPWYGADR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 175 YRVAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHIADPVNNNAWAFATNFVPG 265
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 339 bits (869), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 180/264 (68%), Positives = 198/264 (75%), Gaps = 17/264 (6%)
Query: 7 AATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS-AQ 65
AA A S+ P T A+ VVP + WYGPDR K+LGPFS
Sbjct: 2 AAIAKSAVRSSVRP------TVASRAARVVPRAAIE-------WYGPDRPKFLGPFSEGD 48
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
PSYLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGC+TPE+L K+ V
Sbjct: 49 VPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGV 108
Query: 126 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
F E VWFKAGAQIF+EGGL+YLGN NLVHAQSI+A L FQVV+MGL E +R NG P +G
Sbjct: 109 SFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGP-LG 167
Query: 186 EGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 244
EG D L+PGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 168 EGLDPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 226
Query: 245 LLDHLENPVANNAWVYATKFVPGS 268
L DHL NP A NA+ YATKF P +
Sbjct: 227 LSDHLANPSAVNAFAYATKFTPSA 250
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 338 bits (868), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 170/219 (77%), Positives = 185/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 121
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEG LDYLG+PNLVHAQSILA+ QV+L
Sbjct: 122 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQVIL 180
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EG+R+ G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 181 MGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFAELKVKELKNGRLAMFSMF 238
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 239 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 277
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/219 (77%), Positives = 184/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 58 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 117
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 118 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 176
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRL MFSMF
Sbjct: 177 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLTMFSMF 234
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+E+L DHL +PV NNAW Y T FVPG
Sbjct: 235 GFFVQAIVTGKGPIEDLADHLADPVNNNAWAYGTNFVPG 273
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/219 (76%), Positives = 185/219 (84%), Gaps = 3/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG DRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLG
Sbjct: 32 WYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLG 91
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 92 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVIL 150
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+R+ G +GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMF
Sbjct: 151 MGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMF 209
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW +AT FVPG
Sbjct: 210 GFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPG 248
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/251 (69%), Positives = 193/251 (76%), Gaps = 11/251 (4%)
Query: 18 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD 77
+TP LG R + +K WYGPDRVKYLGPFS + PSYLTGEFPGD
Sbjct: 4 STPQLGVGRVSMRKTA-------SKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGD 56
Query: 78 YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGA 137
YGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E WFKAG+
Sbjct: 57 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEACWFKAGS 115
Query: 138 QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQY 196
QIFSEGGLDYLGN +L+HAQSILA+ QV+LMG VEG+RI G P +GE D +YPGG
Sbjct: 116 QIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS- 173
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPL LADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NN
Sbjct: 174 FDPLALADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 233
Query: 257 AWVYATKFVPG 267
AW YAT FVPG
Sbjct: 234 AWAYATNFVPG 244
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 179/273 (65%), Positives = 202/273 (73%), Gaps = 18/273 (6%)
Query: 5 MAAATASSSTS---------LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA T S S+S + ++ G++R T AK WYG DR
Sbjct: 1 MAATTMSLSSSSFARKMVENIPSSALFGEARVTMRKTA-----AKAKQVSSGSPWYGADR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 175 YRVAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DH+ +P+ NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHIADPINNNAWAFATNFVPG 265
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/220 (78%), Positives = 185/220 (84%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 49 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 108
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ G QVVL
Sbjct: 109 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVL 167
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 168 MGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 225
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/251 (70%), Positives = 192/251 (76%), Gaps = 11/251 (4%)
Query: 18 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD 77
+TP LG R + +K WYGPDRVKYLGPFS + PSYLTGEFPGD
Sbjct: 4 STPQLGVGRVSMRKTA-------SKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGD 56
Query: 78 YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGA 137
YGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E WFKAG+
Sbjct: 57 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEASWFKAGS 115
Query: 138 QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQY 196
QIFSEGGLDYLGN +L+HAQSILA+ QV+LMG VEG+RI G P +GE D +YPGG
Sbjct: 116 QIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS- 173
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPL LADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL PV NN
Sbjct: 174 FDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233
Query: 257 AWVYATKFVPG 267
AW YAT FVPG
Sbjct: 234 AWAYATNFVPG 244
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/219 (76%), Positives = 185/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 62 WYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 121
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+ QV+L
Sbjct: 122 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVIL 180
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EG+R+ G P +GE D +YPGG FDPLGLADDP FA++KVKEIKNGRLAMFSMF
Sbjct: 181 MGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFADVKVKEIKNGRLAMFSMF 238
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 239 GFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPG 277
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 177/253 (69%), Positives = 193/253 (76%), Gaps = 9/253 (3%)
Query: 16 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP 75
L ++ G++R T AK WYG DRV YLGP S PSYLTGEFP
Sbjct: 42 LPSSALFGEARVTMRKTA-----AKAKPVSSGSPWYGSDRVLYLGPLSGDPPSYLTGEFP 96
Query: 76 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKA 135
GDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKA
Sbjct: 97 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKA 155
Query: 136 GAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGG 194
G+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+ G P +GE D LYPGG
Sbjct: 156 GSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEIVDPLYPGG 214
Query: 195 QYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVA 254
FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV
Sbjct: 215 S-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 273
Query: 255 NNAWVYATKFVPG 267
NNAW +AT FVPG
Sbjct: 274 NNAWAFATNFVPG 286
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 172/220 (78%), Positives = 185/220 (84%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG DRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 50 WYGADRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 109
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVL
Sbjct: 110 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL 168
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 169 MGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 226
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 227 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 266
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 169/219 (77%), Positives = 184/219 (84%), Gaps = 3/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLG
Sbjct: 28 WYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLG 87
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 88 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVIL 146
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+R+ G +GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMF
Sbjct: 147 MGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMF 205
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 206 GFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 244
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 177/246 (71%), Positives = 196/246 (79%), Gaps = 8/246 (3%)
Query: 26 RTTAN--ALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTA 83
RTT A + V P AK + + WYGPDR +LG F+ + PSYLTGEFPGDYGWDTA
Sbjct: 17 RTTVKVEARRTVKPA--AKSSTPDSFWYGPDRPLFLGAFTGEPPSYLTGEFPGDYGWDTA 74
Query: 84 GLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEG 143
GLSADPE F R R LE+IH RWAMLGALGCI PE+L + V F E VWFKAGAQIF EG
Sbjct: 75 GLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSY-GVPFGESVWFKAGAQIFQEG 133
Query: 144 GLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGL 202
GLDYLGNP+LVHAQSILA+LG QV+LMG +EG+R+NG P +GEG D LYPGG FDPLGL
Sbjct: 134 GLDYLGNPSLVHAQSILAILGTQVILMGAIEGYRVNGGP-LGEGLDKLYPGGS-FDPLGL 191
Query: 203 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYAT 262
ADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHL NP NNA+ YAT
Sbjct: 192 ADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGVNNAFAYAT 251
Query: 263 KFVPGS 268
KF P +
Sbjct: 252 KFTPSA 257
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 178/265 (67%), Positives = 201/265 (75%), Gaps = 10/265 (3%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
MA A A SS + R S A + V P +K + + WYGP+R +LG F+
Sbjct: 1 MAFALAKSSLAPRCL----ASTVKVEARRTVKPA--SKASTPDSFWYGPERPLFLGAFTG 54
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
+ PSYLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGCITPE+L K
Sbjct: 55 EPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAK-SG 113
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
F E VWFKAGAQIFSEGGLDYLGNP+LVHAQ+I+A L QV+LMGLVEG+R+NG P
Sbjct: 114 TQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGP-A 172
Query: 185 GEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP++
Sbjct: 173 GEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQ 231
Query: 244 NLLDHLENPVANNAWVYATKFVPGS 268
NL DHL NP NNA+ +ATKF P +
Sbjct: 232 NLDDHLSNPTVNNAFAFATKFTPSA 256
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 179/269 (66%), Positives = 202/269 (75%), Gaps = 17/269 (6%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM----------GNELWYGPDRVKYL 59
A+++ +L + F G++ + G+A+ TM WYGPDRV YL
Sbjct: 2 ATTTMTLSSPAFAGKA---VKNMPSSALFGDARMTMRKTGAKPKVASGSPWYGPDRVLYL 58
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GP S + PSYLTGEF GDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 59 GPLSGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 118
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI
Sbjct: 119 AR-NGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA 177
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 178 GGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 236 KGPLENLADHLADPVNNNAWAYATNFVPG 264
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/220 (76%), Positives = 185/220 (84%), Gaps = 3/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG DRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLG
Sbjct: 16 WYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLG 75
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 76 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVIL 134
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+R+ G +GE D LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMF
Sbjct: 135 MGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMF 193
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGP+ENL DHL +PV NNAW +AT FVPG
Sbjct: 194 GFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 233
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/216 (79%), Positives = 184/216 (85%), Gaps = 4/216 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 23 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 82
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 83 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVIL 141
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 142 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 199
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
GFFVQAIVTGKGPLENL DHL +PV NNAW +AT F
Sbjct: 200 GFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 235
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 177/253 (69%), Positives = 193/253 (76%), Gaps = 9/253 (3%)
Query: 16 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP 75
L ++ G++R T AK WYG DRV YLGP S PSYLTGEFP
Sbjct: 21 LPSSALFGEARVTMRKTA-----AKAKPVSSGSPWYGSDRVLYLGPLSGDPPSYLTGEFP 75
Query: 76 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKA 135
GDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKA
Sbjct: 76 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKA 134
Query: 136 GAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGG 194
G+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+ G P +GE D LYPGG
Sbjct: 135 GSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEIVDPLYPGG 193
Query: 195 QYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVA 254
FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV
Sbjct: 194 S-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 252
Query: 255 NNAWVYATKFVPG 267
NNAW +AT FVPG
Sbjct: 253 NNAWAFATNFVPG 265
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/219 (77%), Positives = 184/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 49 WYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVL
Sbjct: 109 ALGCVFPELLAR-NGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL 167
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 168 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 225
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTG GP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 226 GFFVQAIVTGNGPIENLADHLADPVNNNAWAYATNFVPG 264
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/219 (78%), Positives = 184/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLG
Sbjct: 47 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLG 106
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALG + PE L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 107 ALGIVFPEPLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVIL 165
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D YPGG FDPLGLADDP FAELKVKE+KNGRLAMFS+F
Sbjct: 166 MGAVEGYRIAGGP-LGEVTDPTYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSVF 223
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 224 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 262
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 178/273 (65%), Positives = 201/273 (73%), Gaps = 18/273 (6%)
Query: 5 MAAATASSSTS---------LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA T S S+S + ++ G++R T AK WYG DR
Sbjct: 1 MAATTMSLSSSSFARKMVENIPSSALFGEARVTMRKTA-----AKAKQVSSGSPWYGADR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+ VHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 175 YRVAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DH+ +P+ NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHIADPINNNAWAFATNFVPG 265
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 186/274 (67%), Positives = 203/274 (74%), Gaps = 21/274 (7%)
Query: 5 MAAATASSSTSLR----------ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPD 54
MA+ A SS SL A+ LG R + ++ + AK WYG D
Sbjct: 1 MASTMALSSPSLAGKAVKLGPSAASELLGNGRIS---MRKTI----AKPVSSGSPWYGAD 53
Query: 55 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCI 114
RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 54 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 113
Query: 115 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
PE+L + V F E VWFKAGAQIFS+GGLDYLGN +LVHAQSILA+ QVVLMG VE
Sbjct: 114 FPELLAR-NGVKFGEAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQVVLMGAVE 172
Query: 175 GFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
G+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQ
Sbjct: 173 GYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 234 AIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
AIVTGKGPLENL D L +PV NNAW YAT FVPG
Sbjct: 231 AIVTGKGPLENLADPLADPVNNNAWPYATNFVPG 264
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 179/273 (65%), Positives = 200/273 (73%), Gaps = 19/273 (6%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGP 53
MAAAT + S+S A + S +++ GN K TM WYGP
Sbjct: 1 MAAATMALSSSTFAGKVVKLSPSSSEI------TGNGKATMRKTATKAKPVSSGSPWYGP 54
Query: 54 DRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC 113
DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC
Sbjct: 55 DRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 114
Query: 114 ITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV 173
+ PE+ + V F E VW KAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG V
Sbjct: 115 VFPELFAR-NGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAV 173
Query: 174 EGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
EG+R+ G P + LYPGG FDPLGLA+DP FAELKVKE KNGRLAMFSMFGFF+Q
Sbjct: 174 EGYRVAGGPLGVVVDPLYPGGS-FDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQ 232
Query: 234 AIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
AIVTGKGPLENL DHL +PV NNAW YAT FVP
Sbjct: 233 AIVTGKGPLENLADHLVDPVNNNAWSYATNFVP 265
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 170/221 (76%), Positives = 186/221 (84%), Gaps = 4/221 (1%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPFS TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 52 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 111
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K+ V F E VWFKAGAQIF+EGGL+YLGN NLVHAQSI+A L FQVV
Sbjct: 112 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVV 171
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
+MGL E +R NG P +GEG D L+PGG FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 172 VMGLAEAYRANGGP-LGEGLDPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSM 229
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP+ENL DHL NP A NA+ YATKF P +
Sbjct: 230 FGFFVQAIVTGKGPIENLSDHLANPSAVNAFAYATKFTPSA 270
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/220 (76%), Positives = 185/220 (84%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 17 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 76
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+ QV+L
Sbjct: 77 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVIL 135
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EG+R+ G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 136 MGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 193
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGP+ENL DH+ +PV NNAW YAT FVPG
Sbjct: 194 GFFVQAIVTGKGPIENLADHIADPVNNNAWAYATNFVPGK 233
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 181/273 (66%), Positives = 201/273 (73%), Gaps = 18/273 (6%)
Query: 5 MAAATASSSTSLRA---------TPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA T S S+S A + G++R T AK WYG DR
Sbjct: 1 MAATTMSLSSSTFAGKAVKNVPSSALFGEARVTMRKTT-----AKAKQVSSGSPWYGADR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIF+EGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 175 YRVAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLGDHITDPVNNNAWAFATNFVPG 265
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 336 bits (862), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 184/272 (67%), Positives = 199/272 (73%), Gaps = 16/272 (5%)
Query: 5 MAAAT-ASSSTSLRATP------FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVK 57
MAAAT A +S +L P G+ R T K WYG DRV
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTA-----AKPKPAASGSPWYGADRVL 55
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGP S PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 56 YLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R
Sbjct: 116 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 174
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 175 VAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 232
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 233 TGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 336 bits (862), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 179/271 (66%), Positives = 201/271 (74%), Gaps = 21/271 (7%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM------------GNELWYGPDRVK 57
ASS+ +L +T F G++ ++ G A+ TM WYGPDRV
Sbjct: 2 ASSTMALSSTAFAGKAVNVPSS-----SFGEARVTMRKTAAKAKPAAASGSPWYGPDRVL 56
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 57 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 116
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+R
Sbjct: 117 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR 175
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
I G P +GE D LYPGG FDPLGLADDP F ELKVKE+K GRLAM SMFGFFVQAIV
Sbjct: 176 IAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIV 233
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPG 267
TGKGPLENL DH+ +PV NNAW YAT FVPG
Sbjct: 234 TGKGPLENLADHIADPVNNNAWAYATNFVPG 264
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 184/272 (67%), Positives = 199/272 (73%), Gaps = 16/272 (5%)
Query: 5 MAAAT-ASSSTSLRATP------FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVK 57
MAAAT A +S +L P G+ R T K WYG DRV
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTA-----AKPKPAASGSPWYGADRVL 55
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGP S PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 56 YLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R
Sbjct: 116 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 174
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 175 VAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 232
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGPLENL DH+ +PV NNAW YAT FVPG
Sbjct: 233 TGKGPLENLADHIADPVNNNAWAYATNFVPGK 264
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 335 bits (860), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 179/271 (66%), Positives = 199/271 (73%), Gaps = 15/271 (5%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALHQTTS-----FLGTAPRRDELVRRVGNSGGRITMRRTVKSAPQNIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTG+FPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC PE+
Sbjct: 56 LGPFSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPEI 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L K V+F E VWFKAGAQIFSEGGLDYLGNP LV QSILA+ QVVLMG VEG+R+
Sbjct: 116 LSK-NGVNFGEAVWFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAVQVVLMGFVEGYRV 174
Query: 179 NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P +GEG D +YPGG FD LGLA+DP TFAE KVKE NGRLAMFSM GFFVQAIVT
Sbjct: 175 GGGP-LGEGLDKVYPGGA-FDHLGLAEDPDTFAEFKVKEFNNGRLAMFSMLGFFVQAIVT 232
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGP+EN DH+ +PVANNAW YAT FVPG
Sbjct: 233 GKGPIENFFDHVADPVANNAWAYATNFVPGK 263
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/220 (77%), Positives = 183/220 (83%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG DRV YLGP S PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 43 WYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 102
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVL
Sbjct: 103 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL 161
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 162 MGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 219
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGPLENL DH+ +PV NNAW YAT FVPG
Sbjct: 220 GFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 259
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 182/269 (67%), Positives = 197/269 (73%), Gaps = 14/269 (5%)
Query: 5 MAAATASSSTSL----RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MAA T + ST RA LG R T + WYG DRV YLG
Sbjct: 1 MAATTMTLSTPAMKLARAATVLGGGRITMRKSV------AKASSSSGSPWYGSDRVLYLG 54
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
P S PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 55 PLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 114
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+ G
Sbjct: 115 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 173
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D LYPGG FDPLGLA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 174 GP-LGEIVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 231
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENL DHL +PV NNAW +AT FVPG
Sbjct: 232 GPLENLADHLADPVNNNAWAFATNFVPGK 260
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/217 (78%), Positives = 185/217 (85%), Gaps = 4/217 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGP+RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 7 WYGPERVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 66
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 67 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLL 125
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 126 MGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 183
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFV 265
GFFVQAIVTGKGPLENL DHL +PV NNAW +AT FV
Sbjct: 184 GFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFV 220
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/266 (67%), Positives = 202/266 (75%), Gaps = 11/266 (4%)
Query: 10 ASSSTSLRATPFLGQSRT--TANALKDVVPM-----GNAKYTMGNELWYGPDRVKYLGPF 62
ASS+ +L +T F G++ +++A + V M WYGPDRV YLGP
Sbjct: 2 ASSTMALSSTAFAGKAVNVPSSSAFEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPL 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 62 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E V FKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G P
Sbjct: 121 NGVKFGEAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GE D LYPGG FDPLGLADDP FAELKVKE+K GRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKKGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
LENL DH+ +PV NNAW YAT FVPG
Sbjct: 239 LENLADHIADPVNNNAWAYATNFVPG 264
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 176/260 (67%), Positives = 197/260 (75%), Gaps = 13/260 (5%)
Query: 8 ATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTP 67
+ A + S R+T + RT A K P + WYGP+R +LG F+ + P
Sbjct: 1 SAAKAGVSRRSTVRVEARRTVKPASKASTP---------DSFWYGPERPLFLGAFTGEPP 51
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127
SYLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGCI PE+L + V F
Sbjct: 52 SYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSY-GVPF 110
Query: 128 KEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEG 187
E VWFKAGAQIF EGGLDYLGN NLVHAQSILA+LG QV+LMG +EG+R+NG P +GEG
Sbjct: 111 GEAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQVLLMGAIEGYRVNGGP-LGEG 169
Query: 188 ND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 246
D LYPGG FDPLGLADDP TF+ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL
Sbjct: 170 LDKLYPGGS-FDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLS 228
Query: 247 DHLENPVANNAWVYATKFVP 266
DHL NP NNA+ YATKF P
Sbjct: 229 DHLANPGTNNAFAYATKFTP 248
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 164/220 (74%), Positives = 184/220 (83%), Gaps = 3/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDR K+LGPFS TP+YLTGEFPGDYGWDTAGLSADPE F + R LEVIH RWA+LG
Sbjct: 39 WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLG 98
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALG +TPE+L + V F EPVWFKAGAQIFSEGGLDYLG+P L+HAQ+I+A L QVVL
Sbjct: 99 ALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVL 158
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MGL+EG+R+NG P GEG D LYP G+ FDPLGLADDP TFAELKVKEIKNGRLAMFS F
Sbjct: 159 MGLIEGYRVNGGP-AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCF 216
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGP++NL DHL +P NNA+ ATKF P +
Sbjct: 217 GFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTPSA 256
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/230 (71%), Positives = 189/230 (82%), Gaps = 1/230 (0%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
G + T +YGPDR K+LGPFS TPSYLTGEFPGDYGWDTAGLSADPE FA R L
Sbjct: 23 GQKQVTRAAVEFYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFASYREL 82
Query: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
E+IH RWAMLGALGC+TPE+L K+ V+F E VWFKAGAQIF++GGLDYLGN +LVHAQS
Sbjct: 83 ELIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSLVHAQS 142
Query: 159 ILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
ILA+LG QVVLMG E FR+NG P + + L+PGG FDPLGLADDP TF+ELKVKEIK
Sbjct: 143 ILAILGCQVVLMGGAEAFRVNGGPLGEDLDKLHPGGA-FDPLGLADDPDTFSELKVKEIK 201
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
NGRLAMFSMFGFFVQAIVTGKGP+EN +H+ +P +N +VYATKFVPG+
Sbjct: 202 NGRLAMFSMFGFFVQAIVTGKGPVENWAEHIADPSGSNGFVYATKFVPGN 251
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 170/225 (75%), Positives = 188/225 (83%), Gaps = 2/225 (0%)
Query: 44 TMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHG 103
++ +WYGPDR KYLGPFS QTPSYLTGEFPGDYGW+TAG+SADPE FARNR LEVIH
Sbjct: 7 SVPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHS 66
Query: 104 RWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVL 163
RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+
Sbjct: 67 RWAMLGALGCVFPEILAK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIW 125
Query: 164 GFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 223
QVVLMG VEG+ + G P + +YPGG F+PLGLADDP T AELKVKE+KNGRLA
Sbjct: 126 ACQVVLMGFVEGYGVGGGPLGEGLDKVYPGGA-FEPLGLADDPDTAAELKVKELKNGRLA 184
Query: 224 MFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
MFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG+
Sbjct: 185 MFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGN 229
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 176/266 (66%), Positives = 200/266 (75%), Gaps = 13/266 (4%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
MA A S +L+ + + T+ + P G WYGP+R K+LGP+S
Sbjct: 1 MAFAVTFSRKALQVSAKATGKKGTSKTVAKPAPSGIE--------WYGPNRAKWLGPYSE 52
Query: 65 Q-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGC+TPE+L K
Sbjct: 53 NATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSK-N 111
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAGAQIF EGGLDYLGNP+LVHAQ+I+A L QV+LMGLVEG+R+NG P
Sbjct: 112 GVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNGGP- 170
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 171 AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 229
Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
ENL DHL NP NNA+ +ATKF P +
Sbjct: 230 ENLNDHLANPAVNNAFAFATKFTPSA 255
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 163/218 (74%), Positives = 183/218 (83%), Gaps = 2/218 (0%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPFS PSYLTGEFPGDYGWDTAGLSADPE F R E+IH RWAML
Sbjct: 27 WYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 86
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K+ V F E VWFKAG+QIF EGGLDYLGNP+LVHAQSILA+LG QVV
Sbjct: 87 GALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVV 146
Query: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
LMGL+E +R+NG P +GEG D+ G+ FDPLGLADDP TFAELKVKEIKNGRLAMFSMF
Sbjct: 147 LMGLIEAYRVNGGP-LGEGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 205
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
GF+VQAIVTGKGP+EN +H+ +P + NAW YATKFVP
Sbjct: 206 GFYVQAIVTGKGPIENWAEHVADPFSVNAWNYATKFVP 243
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 180/266 (67%), Positives = 203/266 (76%), Gaps = 14/266 (5%)
Query: 4 IMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
+MA A S+S++L G++R T ++ + G+ WYG DRV YLGP S
Sbjct: 12 VMARAAPSTSSAL-----FGEARIT---MRKTAAKPKPAASSGSP-WYGADRVLYLGPLS 62
Query: 64 A-QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
+ PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 63 GREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR- 121
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G P
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 181
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GE D LYPGG FDPLGLADDP AELKVK+IKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 -LGEVVDPLYPGGA-FDPLGLADDPEACAELKVKKIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 242 LENLLDHLENPVANNAWVYATKFVPG 267
LENL DHL +PV NNAW YAT FVPG
Sbjct: 240 LENLADHLADPVNNNAWAYATNFVPG 265
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 169/216 (78%), Positives = 183/216 (84%), Gaps = 4/216 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEF GDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 19 WYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLG 78
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 79 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 137
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 138 MGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 195
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
GFFVQAIVTGKGPLENL DHL +PV NNAW +AT F
Sbjct: 196 GFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 231
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 176/251 (70%), Positives = 192/251 (76%), Gaps = 9/251 (3%)
Query: 19 TPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDY 78
+ G++R T AK + WYG DRV YLGP S + PSYLTGEFPGDY
Sbjct: 24 STLFGEARVTMRKTT-----AKAKQVSSSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDY 78
Query: 79 GWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQ 138
GWDTAGLSADPE FA+NR LEVIH RWAMLGALG I PE+L + V F E VWFKAG+Q
Sbjct: 79 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGSIFPELLAR-NGVKFGEAVWFKAGSQ 137
Query: 139 IFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYF 197
IFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG F
Sbjct: 138 IFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEIVDPLYPGGS-F 195
Query: 198 DPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNA 257
DPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNA
Sbjct: 196 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIVDPVNNNA 255
Query: 258 WVYATKFVPGS 268
W +AT FVPG
Sbjct: 256 WAFATNFVPGK 266
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 168/255 (65%), Positives = 194/255 (76%), Gaps = 14/255 (5%)
Query: 13 STSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS-AQTPSYLT 71
T++ A P S N +++ V WYGPDR K+LGPFS PSYLT
Sbjct: 2 QTAMLAKPVGFASSNVRNIVRNAVE------------WYGPDRAKWLGPFSEGDVPSYLT 49
Query: 72 GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV 131
G+FPGDYGWDTAGLSADPE F R E+IH RWAMLGALGC+TPE+L K+ V F E V
Sbjct: 50 GQFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESV 109
Query: 132 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLY 191
WFKAG+QIF EGGLDYLGNP+LVHAQSILA+LG QVVLMGL+E +R+NG P +GEG D+
Sbjct: 110 WFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGGP-LGEGLDVL 168
Query: 192 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLEN 251
G+ FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGF+VQAIVTGKGP+EN +H+ +
Sbjct: 169 HPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVAD 228
Query: 252 PVANNAWVYATKFVP 266
P + NAW YATKFVP
Sbjct: 229 PFSVNAWNYATKFVP 243
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 333 bits (853), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 169/219 (77%), Positives = 182/219 (83%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGP S + PSYLTGEF GDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 49 WYGPDRVLYLGPLSGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVL
Sbjct: 109 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL 167
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 168 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 225
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW Y FVPG
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYVPNFVPG 264
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 333 bits (853), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 183/272 (67%), Positives = 197/272 (72%), Gaps = 27/272 (9%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A S+SL L R N L V A+ TM +WYGPDR K
Sbjct: 1 MATASAIQSSSLAGQTLL---RPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA MLGALGC+ PE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA-------------MLGALGCVFPE 104
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R
Sbjct: 105 LLAK-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYR 163
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 164 VGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 221
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +P ANNAW YAT FVPG
Sbjct: 222 TGKGPIENLFDHLADPTANNAWAYATNFVPGK 253
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 332 bits (852), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 186/221 (84%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K V F E VWFKAGAQIF EGGLDYLGNP+LVHAQ+I+A L QV+
Sbjct: 97 GALGCLTPELLSK-NGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVI 155
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGLVEG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 156 LMGLVEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 213
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP+ENL DHL NP NNA+ +ATKF P +
Sbjct: 214 FGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTPSA 254
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 332 bits (851), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 186/221 (84%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K V F E VWFKAGAQIF EGGLDYLGNP+LVHAQ+I+A L QV+
Sbjct: 97 GALGCLTPELLSK-NGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVI 155
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGLVEG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 156 LMGLVEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 213
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP+ENL DHL NP NNA+ +ATKF P +
Sbjct: 214 FGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTPSA 254
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/269 (68%), Positives = 203/269 (75%), Gaps = 13/269 (4%)
Query: 5 MAAAT-ASSSTSLR---ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MAAAT A SS +L A G+ R T ++ + G+ WYG DRV YLG
Sbjct: 1 MAAATMALSSPALAGKAAAKVFGEGRIT---MRKSAAKPKPAASSGSP-WYGADRVLYLG 56
Query: 61 PFSA-QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
P S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG LGC+ PE+L
Sbjct: 57 PLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPELL 116
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI
Sbjct: 117 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 175
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 176 GGP-LGEVVDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 233
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPG 267
KGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 234 KGPLENLADHLADPVNNNAWAYATNFVPG 262
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 178/270 (65%), Positives = 204/270 (75%), Gaps = 15/270 (5%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MA ++ + + S +AT G +T A A + G E +YGP+R K+LG
Sbjct: 1 MAFALSFSRKALQVSAKATGKKGTGKTAAK---------QAPASSGIE-FYGPNRAKWLG 50
Query: 61 PFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
P+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGCITPE+L
Sbjct: 51 PYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELL 110
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
K F E VWFKAGAQIFSEGGLDYLGNP+LVHAQ+I+A L QV+LMGLVEG+R+N
Sbjct: 111 AK-SGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVN 169
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 170 GGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 227
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGP++NL DHL NP NNA+ +ATKF P +
Sbjct: 228 KGPIQNLDDHLSNPTVNNAFAFATKFTPSA 257
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/228 (73%), Positives = 187/228 (82%), Gaps = 4/228 (1%)
Query: 38 MGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRA 97
+G K + WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR
Sbjct: 1 VGKPKPVSSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 60
Query: 98 LEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQ 157
LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQ
Sbjct: 61 LEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 119
Query: 158 SILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKE 216
SILA+ QV+LMG VEG+R+ G P +GE D LYPGG FDPLGLA+DP FAELKVKE
Sbjct: 120 SILAIWACQVILMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKE 177
Query: 217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW + K
Sbjct: 178 LKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFCHKL 225
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 171/230 (74%), Positives = 186/230 (80%), Gaps = 4/230 (1%)
Query: 40 NAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALE 99
AK WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LE
Sbjct: 7 KAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 66
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
+IH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSI
Sbjct: 67 LIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI 125
Query: 160 LAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIK 218
LA+ QVVLMG VEG+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKE+K
Sbjct: 126 LAIWACQVVLMGAVEGYRVAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKELK 183
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
NGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 184 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 233
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 186/221 (84%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K V F E VWFKAGAQIF EGGLDYLGNP+LVHAQ+I+A L QV+
Sbjct: 97 GALGCVTPELLSK-NGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVI 155
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGLVEG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 156 LMGLVEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 213
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP+ENL DHL NP NNA+ +ATKF P +
Sbjct: 214 FGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTPSA 254
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 186/221 (84%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K V F E VWFKAGAQIF EGGLDYLGNP+LVHAQ+I+A L QV+
Sbjct: 97 GALGCLTPELLSK-NGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVI 155
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGLVEG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 156 LMGLVEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 213
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP+ENL DHL NP NNA+ +ATKF P +
Sbjct: 214 FGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTPSA 254
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 169/219 (77%), Positives = 185/219 (84%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
W+GPD VKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 12 WHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 71
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 72 ALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 130
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLA+ P FAELKVKE+KNGRLAMFSMF
Sbjct: 131 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEVPEAFAELKVKELKNGRLAMFSMF 188
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFV AIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 189 GFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 227
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 166/224 (74%), Positives = 186/224 (83%), Gaps = 3/224 (1%)
Query: 44 TMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHG 103
T +WYG DR K+LGPFS TPSYL+GE+PGDYGWDTAGLSADPE FA+ R +EVIH
Sbjct: 13 TTPTSMWYGEDRPKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHA 72
Query: 104 RWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVL 163
RWAMLGALGC+TPE+L K V F E VW+KAGAQIF+ GGLDYLGNP+LVHAQSI+A+L
Sbjct: 73 RWAMLGALGCLTPELLAK-NGVSFGEAVWWKAGAQIFAPGGLDYLGNPSLVHAQSIIAIL 131
Query: 164 GFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRL 222
QV+LMG +EG+R+ G PG GEG D +YPGG YFDPLGLADDP TFAELKVKEIKNGRL
Sbjct: 132 ASQVLLMGAIEGYRVYGGPG-GEGLDKVYPGGDYFDPLGLADDPDTFAELKVKEIKNGRL 190
Query: 223 AMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
AMFSMFGFFVQAIVTGKGPLENL HL +P NN + ATKFVP
Sbjct: 191 AMFSMFGFFVQAIVTGKGPLENLESHLADPSVNNGFAAATKFVP 234
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 180/263 (68%), Positives = 200/263 (76%), Gaps = 19/263 (7%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDR 55
MAAAT +L + F GQ+ + + ++ GN + TM + WYGPDR
Sbjct: 1 MAAAT----MALSSPSFAGQAVKLSPSASEI--SGNGRITMRKAVAKSAPSSSPWYGPDR 54
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
VKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC
Sbjct: 55 VKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDF 114
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 115 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 173
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFS FGFFVQA
Sbjct: 174 YRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSTFGFFVQA 231
Query: 235 IVTGKGPLENLLDHLENPVANNA 257
IVTGKGPLENL DHL +PV NNA
Sbjct: 232 IVTGKGPLENLADHLADPVNNNA 254
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 177/270 (65%), Positives = 205/270 (75%), Gaps = 15/270 (5%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MA ++ + + S +AT G +T A + A + G E +YGP+R K+LG
Sbjct: 1 MAFALSFSRKALQVSAKATGKKGTGKTAAKS---------APASSGIE-FYGPNRAKWLG 50
Query: 61 PFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
P+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGC+TPE+L
Sbjct: 51 PYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELL 110
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
K F E VWFKAGAQIFSEGGLDYLGNP+LVHAQ+I+A L QV+LMGLVEG+R+N
Sbjct: 111 AK-NGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVN 169
Query: 180 GLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 170 GGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 227
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVPGS 268
KGP++NL DHL NP NNA+ +ATKF P +
Sbjct: 228 KGPVQNLDDHLSNPTVNNAFAFATKFTPSA 257
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 330 bits (845), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 167/219 (76%), Positives = 181/219 (82%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG DRV YLGP S + PSYLTGEF GDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 49 WYGADRVLYLGPLSGEPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 108
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ G QVV
Sbjct: 109 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVF 167
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+R+ G P +GE D LYPGG DPLGLADDP FAELKVKEIKNGRLAM SMF
Sbjct: 168 MGAVEGYRVAGGP-LGEVVDPLYPGGS-LDPLGLADDPEAFAELKVKEIKNGRLAMLSMF 225
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLEN+ DHL +PV NNAW YAT FVPG
Sbjct: 226 GFFVQAIVTGKGPLENITDHLADPVNNNAWAYATNFVPG 264
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 329 bits (844), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 185/221 (83%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPFS TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 32 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 91
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGCITPE+L K + F E VWFKAGAQIF+EGGL+YLGN NL+HAQSI+A L FQVV
Sbjct: 92 GALGCITPELLAK-NGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVV 150
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
+MGL E +R NG P +GEG D L+PGG FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 151 VMGLAEAYRANGGP-LGEGLDPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSM 208
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP A NA+ YATKF P +
Sbjct: 209 FGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTPSA 249
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 329 bits (843), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 160/218 (73%), Positives = 181/218 (83%), Gaps = 2/218 (0%)
Query: 50 WYGPDRVKYLGPF-SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPF PSYLTGEFPGDYGWDTAGLSADPE F R E+IH RWAML
Sbjct: 27 WYGPDRAKWLGPFFEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 86
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K+ V E VWFKAG+QIF EGGLDYLGNP+LVHAQSILA+LG QVV
Sbjct: 87 GALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVV 146
Query: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
LMGL+E +R+NG P +G+G D+ G+ FDPLGLADDP TFAELKVKEIKNGRLAMFSMF
Sbjct: 147 LMGLIEAYRVNGGP-LGKGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 205
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
GF+VQAIVTGKGP+EN +H+ +P + NAW YATKFVP
Sbjct: 206 GFYVQAIVTGKGPIENWAEHVADPFSVNAWNYATKFVP 243
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 179/273 (65%), Positives = 202/273 (73%), Gaps = 18/273 (6%)
Query: 5 MAAATASSSTS---------LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA T S S+S L ++ +G +R N K AK + WYG DR
Sbjct: 1 MAATTMSLSSSSFAGKAVKNLPSSALIGDARV--NMRKTAA---KAKQVSSSSPWYGSDR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E WFKAG+QIFS+GGLDYLGNP+LVHAQS+LA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D LYPGG FDPLGLA+ P FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 175 YRIAGGP-LGEIVDPLYPGGS-FDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLE+L DH+ +PV NNAW+ AT FVPG
Sbjct: 233 IVTGKGPLEDLADHIADPVNNNAWLIATNFVPG 265
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 185/221 (83%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPFS TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 29 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 88
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGCITPE+L K + F E VWFKAG+QIF+EGGL+YLGN NLVHAQSI+A L FQVV
Sbjct: 89 GALGCITPELLAK-NGIPFGEAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAFQVV 147
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
+MGL E +R NG P +GEG D L+PGG FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 148 VMGLAEAYRANGGP-LGEGLDPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSM 205
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP A NA+ YATKF P +
Sbjct: 206 FGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTPSA 246
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 185/221 (83%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPFS TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 32 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 91
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGCITPE+L K + F E VWFKAGAQIF+EGGL+YLGN NL+HAQSI+A L FQVV
Sbjct: 92 GALGCITPELLAK-NGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVV 150
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
+MGL E +R NG P +GEG D L+PGG FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 151 VMGLAEAYRANGGP-LGEGLDPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSM 208
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP A NA+ YATKF P +
Sbjct: 209 FGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTPSA 249
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 165/221 (74%), Positives = 186/221 (84%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K F E VWFKAGAQIFSEGGLDYLGNP+LVHAQ+I+A L QV+
Sbjct: 96 GALGCLTPELLAK-SGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVI 154
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL+EG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 155 LMGLIEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 212
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP NNA+ +ATKF P +
Sbjct: 213 FGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTPSA 253
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 165/221 (74%), Positives = 186/221 (84%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K F E VWFKAGAQIFSEGGLDYLGNP+LVHAQ+I+A L QV+
Sbjct: 97 GALGCLTPELLAK-NGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVI 155
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL+EG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 156 LMGLIEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 213
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP NNA+ +ATKF P +
Sbjct: 214 FGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTPSA 254
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 167/220 (75%), Positives = 183/220 (83%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
+YGP+R K+LGPFS TP YLTGEF GDYGWDTAGLSADPE F R R LE+IH RWAMLG
Sbjct: 39 FYGPNRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLG 98
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGCITPE+L K V F E VWFKAGAQIF EGGL+YLGN +L+HAQSILA L QV+L
Sbjct: 99 ALGCITPELLAK-NGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVIL 157
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MGLVEG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSMF
Sbjct: 158 MGLVEGYRVNGGP-AGEGLDPLYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 215
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTG+GP+ NL HL +P NNAW YATKFVPG+
Sbjct: 216 GFFVQAIVTGQGPIANLDAHLSDPSGNNAWNYATKFVPGN 255
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 185/221 (83%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPFS TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 12 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 71
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGCITPE+L K + F E VWFKAG+QIF+EGGL+YLGN NLVHAQSI+A L FQVV
Sbjct: 72 GALGCITPELLAK-NGIPFGEAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAFQVV 130
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
+MGL E +R NG P +GEG D L+PGG FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 131 VMGLAEAYRANGGP-LGEGLDPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSM 188
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP A NA+ YATKF P +
Sbjct: 189 FGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTPSA 229
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 165/221 (74%), Positives = 186/221 (84%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K F E VWFKAGAQIFSEGGLDYLGNP+LVHAQ+I+A L QV+
Sbjct: 97 GALGCLTPELLAK-SGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVI 155
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL+EG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 156 LMGLIEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 213
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP NNA+ +ATKF P +
Sbjct: 214 FGFFVQAIVTGKGPVQNLDDHLANPGVNNAFAFATKFTPSA 254
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 164/221 (74%), Positives = 186/221 (84%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 37 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K F E VWFKAGAQIFSEGGLDYLGNP+LVHAQ+I+A L QV+
Sbjct: 97 GALGCLTPELLAK-NGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVI 155
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL+EG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKE+KNGRLAMFSM
Sbjct: 156 LMGLIEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKELKNGRLAMFSM 213
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP NNA+ +ATKF P +
Sbjct: 214 FGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTPSA 254
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 175/273 (64%), Positives = 198/273 (72%), Gaps = 18/273 (6%)
Query: 5 MAAATASSSTSLRA---------TPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA T S+S A + G++R T AK + WYG DR
Sbjct: 1 MAATTMYLSSSTFAGKAVKNVPLSALFGEARVTMRKTA-----AKAKQVSSSSPWYGADR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTG+FPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSREPPSYLTGDFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D LYPGG+ FDPLGLA+ P F LKVKEIKNGRLAMFSMFGF VQA
Sbjct: 175 YRVAGGP-LGEIVDPLYPGGR-FDPLGLAERPQAFDALKVKEIKNGRLAMFSMFGFLVQA 232
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct: 233 IVTGKGPLENLADHIADPVNNNAWAFATNFVPG 265
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/218 (74%), Positives = 178/218 (81%), Gaps = 2/218 (0%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPFS PSYLTGEFPGDYGWDTAGLSADPE F R E+IH RWAML
Sbjct: 12 WYGPDRPKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 71
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K+ V E VWFKAG+QIF EGGLDYLGNP+LVHAQSILA+LG QVV
Sbjct: 72 GALGCVTPEILAKYAGVSCGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVV 131
Query: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
LMGL+E +R+NG P +GEG D G FDPLGLADDP TFAELKVKEIKNGRLAMFSMF
Sbjct: 132 LMGLIEAYRVNGGP-LGEGLDPLHPGDKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 190
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
GF+VQAIVTGKGP+EN DH+ +P AW YATKFVP
Sbjct: 191 GFYVQAIVTGKGPIENWADHVADPFNVTAWNYATKFVP 228
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 170/258 (65%), Positives = 200/258 (77%), Gaps = 14/258 (5%)
Query: 13 STSLRATPFLGQSRTTANALKDVVPM---GNAKYTMGNELWYGPDRVKYLGPFSAQTPSY 69
++++ A FLG S L VP G + T +YGP+R YLGPF+ ++PSY
Sbjct: 2 ASTMMAKTFLGAS------LAKAVPTSGKGTKQVTRAAIEFYGPNRAGYLGPFT-KSPSY 54
Query: 70 LTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKE 129
L GE+PGDYGWDTAGLSADPE FAR R +EVIH RWAMLGALGC+TPE+L K V F E
Sbjct: 55 LNGEYPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAK-NGVSFGE 113
Query: 130 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND 189
VW+KAG+QIF+ GGLDYLGNP+L+HAQSI+A++ QV+LMGL+EG+R+NG P GEG D
Sbjct: 114 AVWWKAGSQIFAPGGLDYLGNPSLIHAQSIIAIVFSQVLLMGLIEGYRVNGGP-AGEGLD 172
Query: 190 -LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 248
LYPG + FDPLGLADDP TFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH
Sbjct: 173 ALYPG-EAFDPLGLADDPDTFAELRVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 231
Query: 249 LENPVANNAWVYATKFVP 266
L NP NN + ATKFVP
Sbjct: 232 LANPSVNNGFAAATKFVP 249
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 165/225 (73%), Positives = 183/225 (81%), Gaps = 6/225 (2%)
Query: 46 GNE---LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIH 102
GNE +YGPDR +LGP S TP+YLTGEFPGDYGWD+AGLSADPE F R R LE+IH
Sbjct: 45 GNEKLSAFYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIH 104
Query: 103 GRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV 162
RWAMLGALGCITPE+L K EPVWFKAGAQIF+EGGLDYLGNP LVHAQSILA
Sbjct: 105 ARWAMLGALGCITPELLAK-NGTPIVEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSILAT 163
Query: 163 LGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
L QV+LMG +EG+R+NG P GEG D L+PGGQ+FDPLGLA+DP FAELKVKEIKNGR
Sbjct: 164 LAVQVILMGAIEGYRVNGGP-AGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGR 222
Query: 222 LAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
LAMFSMFGFFVQAIVTGKGPL NL +HL +P +NA+ YA KF P
Sbjct: 223 LAMFSMFGFFVQAIVTGKGPLANLDEHLASPFTSNAFTYAQKFTP 267
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 164/221 (74%), Positives = 185/221 (83%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K F E VWFKAGAQIFSEGGLDYLGNP+LVHAQ+I+A L QV+
Sbjct: 97 GALGCLTPELLAK-SGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVI 155
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL+EG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNG LAMFSM
Sbjct: 156 LMGLIEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGALAMFSM 213
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP NNA+ +ATKF P +
Sbjct: 214 FGFFVQAIVTGKGPVQNLDDHLANPGVNNAFAFATKFTPSA 254
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 169/249 (67%), Positives = 193/249 (77%), Gaps = 13/249 (5%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
++++++ + F GQ+ + + ++ V G + TM +WYGPDR KYLGPF
Sbjct: 2 ATSAIQQSAFAGQTALKQSNELVRKVGSFGGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK- 120
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
+GEG D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 -LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 242 LENLLDHLE 250
+EN L L
Sbjct: 239 IENSLITLR 247
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 165/223 (73%), Positives = 180/223 (80%), Gaps = 2/223 (0%)
Query: 43 YTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIH 102
+ M + +G +R YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH
Sbjct: 15 FYMASTWCFGFERYGYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 74
Query: 103 GRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV 162
RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+
Sbjct: 75 CRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI 133
Query: 163 LGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRL 222
QV+LMG VEG+R+ G P LYPGG FDPLGLADDP FAELKVKEIKNGRL
Sbjct: 134 WATQVILMGAVEGYRVAGGPLGKVTGPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRL 192
Query: 223 AMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFV 265
AMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FV
Sbjct: 193 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFV 235
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 160/246 (65%), Positives = 191/246 (77%), Gaps = 5/246 (2%)
Query: 24 QSRTTANALKDVVPMGNAKYTMGNEL-WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWD 81
Q+ K +P GN + ++ + WYGPDR K+LGP+S PSYLTGEFPGDYGWD
Sbjct: 3 QTSLVGTTTKSTLPKGNKRVSVQAAVEWYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWD 62
Query: 82 TAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFS 141
TAGLSADPE F + R E+IH RWAMLGALGC+TPE+L K+ F E VWF+AGAQIF
Sbjct: 63 TAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFK 122
Query: 142 EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPL 200
+GGLDYLG+P L+HAQSI A++ QV+LMGL+EG+R+NG P GEG D LYP G+ FDPL
Sbjct: 123 DGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGP-AGEGLDPLYP-GESFDPL 180
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVY 260
GLADDP TFAELK+KEIKNGRLAMFSMFGF+VQAIVTGKGP+EN +H+ +P NA+ Y
Sbjct: 181 GLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVADPFTANAFSY 240
Query: 261 ATKFVP 266
ATKF P
Sbjct: 241 ATKFTP 246
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/221 (73%), Positives = 183/221 (82%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC TPE+L K F E VWFKAGAQIFSEGGLDYLGNP+LVHAQ+I+A QV+
Sbjct: 96 GALGCQTPELLAK-SGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVI 154
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL+EG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLA FSM
Sbjct: 155 LMGLIEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLASFSM 212
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP NNA+ +ATKF P +
Sbjct: 213 FGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTPSA 253
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 163/214 (76%), Positives = 177/214 (82%), Gaps = 4/214 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGP+R K+LGPFS TP YLTGEF GDYGWDTAGLSADPE F R R LE+IH RWAMLG
Sbjct: 40 WYGPERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLG 99
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGCITPE+L K V F E VWFKAGAQIF EGGL+YLGN +L+HAQSILA L QV+L
Sbjct: 100 ALGCITPELLAK-NGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVIL 158
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MGLVEG+R+NG P GEG D LYP G+ FDPLGLADDP TFAELKVKEIKNGRLAMFSMF
Sbjct: 159 MGLVEGYRVNGGP-AGEGLDPLYP-GEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 216
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYAT 262
GFFVQAIVTG+GP+ NL HL +P NNAW YAT
Sbjct: 217 GFFVQAIVTGQGPIANLDAHLSDPSGNNAWNYAT 250
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 159/220 (72%), Positives = 178/220 (80%), Gaps = 3/220 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
+YGP+R +LGP S PSYLTGEFPGDYGWD+AGLS+DPE F R R LE+IH RWAMLG
Sbjct: 53 FYGPERALWLGPLSGSAPSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAMLG 112
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+TPE+L K EPVWFKAGAQIF EGGLDYLGNP LVHAQSILA L QV+L
Sbjct: 113 ALGCVTPELLAK-NGTPIAEPVWFKAGAQIFQEGGLDYLGNPGLVHAQSILATLACQVIL 171
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EGFR+NG P GEG D L+PGG +FDPL LA+DP FAELKVKEIKNGRLAMFSMF
Sbjct: 172 MGAIEGFRVNGGP-AGEGLDKLHPGGPWFDPLALAEDPDAFAELKVKEIKNGRLAMFSMF 230
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTG+GP+ENL HL NP NNA+ +ATKF P +
Sbjct: 231 GFFVQAIVTGQGPIENLESHLANPGVNNAFAFATKFTPSA 270
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/218 (72%), Positives = 180/218 (82%), Gaps = 4/218 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKY+GPFS QTPSYLTGEFPGDYGWD+AGLSA+PE FA+NR LEVIH RWAMLG
Sbjct: 52 WYGPDRVKYMGPFSGQTPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWAMLG 111
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
+GCI PE+LE+ V E VWFKAG+QIF + GL+YLG+P L+HAQ+ILAVL QV+L
Sbjct: 112 TVGCIVPELLER-NGVKIGEAVWFKAGSQIFRDEGLNYLGDPKLIHAQNILAVLAAQVIL 170
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG +EG+RI+G P +GE D LYPGG FDPL LADDP FA LKVKEIKNGRLAMF+M
Sbjct: 171 MGAIEGYRISGGP-LGEPTDPLYPGGN-FDPLHLADDPEEFAILKVKEIKNGRLAMFAML 228
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
GF+VQAIVTGKGPLENL DHL +P NNAW +AT F P
Sbjct: 229 GFYVQAIVTGKGPLENLYDHLADPFKNNAWAFATAFDP 266
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 320 bits (820), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 162/205 (79%), Positives = 175/205 (85%), Gaps = 4/205 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 174 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 231
Query: 229 GFFVQAIVTGKGPLENLLDHLENPV 253
GFFVQAIVTGKGP+ENL DHL +PV
Sbjct: 232 GFFVQAIVTGKGPIENLADHLADPV 256
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 162/205 (79%), Positives = 175/205 (85%), Gaps = 4/205 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 174 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 231
Query: 229 GFFVQAIVTGKGPLENLLDHLENPV 253
GFFVQAIVTGKGP+ENL DHL +PV
Sbjct: 232 GFFVQAIVTGKGPIENLADHLADPV 256
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 319 bits (818), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 161/249 (64%), Positives = 191/249 (76%), Gaps = 5/249 (2%)
Query: 21 FLGQSRTTANALKDVVPMGNAKYTMGNEL-WYGPDRVKYLGPFS-AQTPSYLTGEFPGDY 78
F QS K + GN + ++ + WYGPDR K+LGP+S PSYLTGEFPGDY
Sbjct: 3 FAVQSVLVGATAKTALVKGNKRVSVQAAVEWYGPDRAKWLGPYSDGAVPSYLTGEFPGDY 62
Query: 79 GWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQ 138
GWDTAGLSADPE F + R E+IH RWAMLGALGC+TPE+L K+ F E VWF+AGAQ
Sbjct: 63 GWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQ 122
Query: 139 IFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYF 197
IF +GGLDYLG+P L+HAQSI A++ QV+LMGL+EG+R+NG P GEG D LYP G+ F
Sbjct: 123 IFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGP-AGEGLDPLYP-GESF 180
Query: 198 DPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNA 257
DPLGLADDP TFAELK+KEIKNGRLAMFSMFGF+VQAIVTGKGP+EN +H+ +P NA
Sbjct: 181 DPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHIADPFTANA 240
Query: 258 WVYATKFVP 266
+ YATKF P
Sbjct: 241 FSYATKFTP 249
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 319 bits (818), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 175/205 (85%), Gaps = 4/205 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 174 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 231
Query: 229 GFFVQAIVTGKGPLENLLDHLENPV 253
GFFVQAIVTGKGP+ENL DHL +PV
Sbjct: 232 GFFVQAIVTGKGPIENLADHLADPV 256
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 175/205 (85%), Gaps = 4/205 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 174 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 231
Query: 229 GFFVQAIVTGKGPLENLLDHLENPV 253
GFFVQAIVTGKGP+ENL DHL +PV
Sbjct: 232 GFFVQAIVTGKGPIENLADHLADPV 256
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 175/205 (85%), Gaps = 4/205 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 174 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAMFSMF 231
Query: 229 GFFVQAIVTGKGPLENLLDHLENPV 253
GFFVQAIVTGKGP+ENL DHL +PV
Sbjct: 232 GFFVQAIVTGKGPIENLADHLADPV 256
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 319 bits (817), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 175/205 (85%), Gaps = 4/205 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 174 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 231
Query: 229 GFFVQAIVTGKGPLENLLDHLENPV 253
GFFVQAIVTGKGP+ENL DHL +PV
Sbjct: 232 GFFVQAIVTGKGPIENLADHLADPV 256
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 159/204 (77%), Positives = 172/204 (84%), Gaps = 2/204 (0%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
MG VEG+RI G P + +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFG
Sbjct: 174 MGAVEGYRIAGGPLREVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 230 FFVQAIVTGKGPLENLLDHLENPV 253
FFVQAIVTGKGP+ENL DHL +PV
Sbjct: 233 FFVQAIVTGKGPIENLADHLADPV 256
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 155/218 (71%), Positives = 177/218 (81%), Gaps = 1/218 (0%)
Query: 42 KYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 101
+ T + +YGPDRVK+LGPFS TPSYL GE+PGDYGWDTAGLSADPE F+R R LEVI
Sbjct: 20 QVTRASAEFYGPDRVKFLGPFSGATPSYLKGEYPGDYGWDTAGLSADPETFSRYRELEVI 79
Query: 102 HGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILA 161
H RWAMLGALGC+TPE+L+K +F E VWFKAGAQIF +GGLDYLGN NLVHAQSI+A
Sbjct: 80 HARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLGNANLVHAQSIVA 139
Query: 162 VLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
VL Q+VLMGL+EG+R+NG P + +YP G+ FDPLGLADDP T AELKVKEIKNGR
Sbjct: 140 VLLTQIVLMGLIEGYRVNGGPAGEITDPIYP-GEAFDPLGLADDPDTLAELKVKEIKNGR 198
Query: 222 LAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWV 259
LAM SMFGFF+QAIVTGKGP+ENL DHL P N W+
Sbjct: 199 LAMVSMFGFFIQAIVTGKGPIENLNDHLAAPGETNFWI 236
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 159/204 (77%), Positives = 172/204 (84%), Gaps = 2/204 (0%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
MG VEG+RI G P + +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFG
Sbjct: 174 MGAVEGYRIAGGPLGXVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 230 FFVQAIVTGKGPLENLLDHLENPV 253
FFVQAIVTGKGP+ENL DHL +PV
Sbjct: 233 FFVQAIVTGKGPIENLADHLADPV 256
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 175/205 (85%), Gaps = 4/205 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 52 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 111
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 112 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVIL 170
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 171 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 228
Query: 229 GFFVQAIVTGKGPLENLLDHLENPV 253
GFFVQAIVTGKGP+ENL DHL +PV
Sbjct: 229 GFFVQAIVTGKGPIENLADHLADPV 253
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 177/273 (64%), Positives = 198/273 (72%), Gaps = 28/273 (10%)
Query: 5 MAAAT-ASSSTSLR--------ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAA+T A SS+SL +TP LG R + ++ P K WYGPDR
Sbjct: 1 MAASTMALSSSSLAGQAMKLAPSTPELGVGRVS---MRKTAP----KTVSSGSPWYGPDR 53
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
VKYLGPFS + PSYLTGEF GLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 54 VKYLGPFSGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVF 105
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG
Sbjct: 106 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEG 164
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D +YPGG FDPLGLADDP AELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 165 YRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQA 222
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW YATK PG
Sbjct: 223 IVTGKGPLENLADHLADPVNNNAWAYATKLCPG 255
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 164/231 (70%), Positives = 180/231 (77%), Gaps = 4/231 (1%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
G K + + WYGPDRVKYLGPFS + PSYLTGEFP G DPE FA+NR L
Sbjct: 39 GATKAPVSSSPWYGPDRVKYLGPFSGEPPSYLTGEFPVTTGGTPPVCQPDPETFAKNREL 98
Query: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
EVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQS
Sbjct: 99 EVIHARWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQS 157
Query: 159 ILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEI 217
ILA+ QV+LMG VEG+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEI
Sbjct: 158 ILAIWACQVILMGAVEGYRVAGGP-LGEITDPLYPGGS-FDPLGLADDPEAFAELKVKEI 215
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
KNGRLAMFSMFGF+VQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 216 KNGRLAMFSMFGFYVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 266
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 164/236 (69%), Positives = 186/236 (78%), Gaps = 6/236 (2%)
Query: 32 LKDVVPMGNA--KYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADP 89
L V P G A + T + WYGP+R ++LGPFS TPSYL GE+PGDYGWDTAGLSADP
Sbjct: 9 LAAVKPSGRATRQVTRASVEWYGPNRPQFLGPFSGSTPSYLKGEYPGDYGWDTAGLSADP 68
Query: 90 EAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLG 149
E FAR R LEVIH RWAMLGALGC+TPE+L+ F E VWFKAGAQIF EGGLDYLG
Sbjct: 69 ETFARYRELEVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEGGLDYLG 128
Query: 150 NPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVT 208
NP+L+HAQSI+AVL Q+ LMGL+EG+R+NG P GEG D LYP G+ FDPLGLADDP T
Sbjct: 129 NPSLIHAQSIVAVLLTQLTLMGLIEGYRVNGGP-AGEGLDALYP-GEAFDPLGLADDPDT 186
Query: 209 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAW-VYATK 263
F+ELKVKE+KNGRLAM SMFGFFVQ IVT KGP+ENL DHL +P A N W +YA K
Sbjct: 187 FSELKVKELKNGRLAMVSMFGFFVQGIVTKKGPIENLNDHLASPDATNFWAIYAPK 242
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 160/205 (78%), Positives = 175/205 (85%), Gaps = 4/205 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L K V F E VWFKAGAQIFSEGGLD+LGNP+L+HAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAK-NGVKFGEAVWFKAGAQIFSEGGLDHLGNPSLIHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 174 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAMFSMF 231
Query: 229 GFFVQAIVTGKGPLENLLDHLENPV 253
GFFVQAIVTGKGP+ENL DHL +PV
Sbjct: 232 GFFVQAIVTGKGPIENLADHLADPV 256
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 171/252 (67%), Positives = 191/252 (75%), Gaps = 5/252 (1%)
Query: 8 ATASSSTSLRATPFLGQSRTTANALKDVVPMG-NAKYTMGNELWYGPDRVKYLGPFSAQT 66
+ +SSS + +A L S +A ++ AK + WYG DRV YLG S +
Sbjct: 2 SRSSSSFAGKAVKNLPSSALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGSLSGEP 61
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVK 120
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
F E VWF AG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G P +GE
Sbjct: 121 FGEAVWFMAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGE 179
Query: 187 GND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 180 IVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 238
Query: 246 LDHLENPVANNA 257
DH+ +PV NNA
Sbjct: 239 ADHIADPVNNNA 250
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 174/205 (84%), Gaps = 4/205 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPL LADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 174 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLRLADDPDAFAELKVKEIKNGRLAMFSMF 231
Query: 229 GFFVQAIVTGKGPLENLLDHLENPV 253
GFFVQAIVTGKGP+ENL DHL +PV
Sbjct: 232 GFFVQAIVTGKGPIENLADHLADPV 256
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 161/221 (72%), Positives = 185/221 (83%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALG +TPE+L+K V F E VWFKAGAQIF EGGL+YLGNP+L+HAQ+I+A L QVV
Sbjct: 97 GALGIVTPELLQK-NGVQFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVV 155
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
L+GLVEG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFS
Sbjct: 156 LLGLVEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSS 213
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP NNA+ +ATK+ P +
Sbjct: 214 FGFFVQAIVTGKGPIQNLDDHLSNPGVNNAFAFATKYTPSA 254
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/222 (71%), Positives = 180/222 (81%), Gaps = 5/222 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
+YGPDR K+LGPF+ ++ YLTGEFPGDYGWDTAGLSADP+ F+R R +EVIH RWAMLG
Sbjct: 29 FYGPDRAKFLGPFTPES-DYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLG 87
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGCITPE+L K V F E VWFKAGAQIF +GGL+YLGN NLVHAQSILA L QV+L
Sbjct: 88 ALGCITPELLAK-NGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVIL 146
Query: 170 MGLVEGFRINGLPGVGEGNDL---YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
MG E +R NG G G DL YPGG++FDPLGLADDP T AELKVKE+KNGRLAMFS
Sbjct: 147 MGAAEAYRANGGAPGGFGEDLDSLYPGGKFFDPLGLADDPDTLAELKVKELKNGRLAMFS 206
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
MFGFFVQAIVTG+GP+ NL HL +P NNAW +ATKFVPG+
Sbjct: 207 MFGFFVQAIVTGQGPIANLDAHLADPSGNNAWNFATKFVPGN 248
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/209 (77%), Positives = 175/209 (83%), Gaps = 4/209 (1%)
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH WAMLGALGC+ PE+L
Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLS 60
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G
Sbjct: 61 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 119
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 120 GP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 177
Query: 240 GPLENLLDHLENPVANNAWVYATKFVPGS 268
GPLENL DHL +PV NNAW YAT FVPG
Sbjct: 178 GPLENLADHLADPVNNNAWAYATNFVPGK 206
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 164/223 (73%), Positives = 178/223 (79%), Gaps = 6/223 (2%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPFS TP+YLTGEF GDYGWDTAGLSADP+ FA+ R +EVIH RWAML
Sbjct: 29 WYGPDRPKFLGPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAML 88
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGCITPE+L K V F E VWFKAGAQIF +GGL+YLGN NLVHAQSILA L QV+
Sbjct: 89 GALGCITPELLAK-NGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVL 147
Query: 169 LMGLVEGFRINGLPGVGEGNDL---YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
LMG E +R NG G G DL YPGG FDPLGLADDP T AELKVKEIKNGRLAMF
Sbjct: 148 LMGAAESYRANGGAPGGFGEDLDSLYPGGA-FDPLGLADDPDTLAELKVKEIKNGRLAMF 206
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
SMFGFFVQAIVTG+GP+ NL HL +P NNAW YATKFVPG+
Sbjct: 207 SMFGFFVQAIVTGQGPIANLDAHLSDPSGNNAWNYATKFVPGN 249
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/201 (79%), Positives = 172/201 (85%), Gaps = 4/201 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 174 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 231
Query: 229 GFFVQAIVTGKGPLENLLDHL 249
GFFVQAIVTGKGP+ENL DHL
Sbjct: 232 GFFVQAIVTGKGPIENLADHL 252
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 161/259 (62%), Positives = 187/259 (72%), Gaps = 3/259 (1%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
MAAA ASS T L A + A + VV K + +YGPDRV +LGPF+
Sbjct: 1 MAAALASS-TFLGAAVVAPAQKVEAKKINTVVEARRTKSATPDSPFYGPDRVTFLGPFT- 58
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
PSYLTGE+PGDYGWDT GLSADPE FA R +E++H RWAMLG LGC PE LEK+
Sbjct: 59 DVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYSG 118
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
++F E VWFKAG QIF EGGLDYLGNP+LVHAQSI+A + Q +LMGLVEG+R+ G P
Sbjct: 119 INFGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQALLMGLVEGYRVGGGPLG 178
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 244
G+ +YPGG FDPLGL DDP T AELKVKEIKNGRLAMFSMFG+F+QAIVTGKGP+EN
Sbjct: 179 EAGDKMYPGGS-FDPLGLGDDPDTLAELKVKEIKNGRLAMFSMFGYFIQAIVTGKGPVEN 237
Query: 245 LLDHLENPVANNAWVYATK 263
L HL +P NN + YAT
Sbjct: 238 LDAHLADPFVNNGFAYATS 256
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 161/259 (62%), Positives = 187/259 (72%), Gaps = 3/259 (1%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
MAAA ASS T L A + A + VV K + +YGPDRV +LGPF+
Sbjct: 1 MAAALASS-TFLGAAVVAPAQKAEAKKINTVVEARRTKSATPDSPFYGPDRVTFLGPFT- 58
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
PSYLTGE+PGDYGWDT GLSADPE FA R +E++H RWAMLG LGC PE LEK+
Sbjct: 59 DVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYSG 118
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
++F E VWFKAG QIF EGGLDYLGNP+LVHAQSI+A + Q +LMGLVEG+R+ G P
Sbjct: 119 INFGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQALLMGLVEGYRVGGGPLG 178
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 244
G+ +YPGG FDPLGL DDP T AELKVKEIKNGRLAMFSMFG+F+QAIVTGKGP+EN
Sbjct: 179 EAGDKMYPGGS-FDPLGLGDDPDTLAELKVKEIKNGRLAMFSMFGYFIQAIVTGKGPVEN 237
Query: 245 LLDHLENPVANNAWVYATK 263
L HL +P NN + YAT
Sbjct: 238 LDAHLADPFVNNGFAYATS 256
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/247 (67%), Positives = 186/247 (75%), Gaps = 7/247 (2%)
Query: 21 FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGW 80
FLG S +A K GN + T +YGPDR +LGPF+ ++PSYL GEFPGDYGW
Sbjct: 5 FLGASLRSAVPTKG---QGNKQVTRAAIEFYGPDRAGFLGPFT-ESPSYLKGEFPGDYGW 60
Query: 81 DTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
DTAGLSADPE FAR R +EVIH RWAMLGALGC+TPE+L K V F E VWFKAGAQIF
Sbjct: 61 DTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKN-GVSFGEAVWFKAGAQIF 119
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL-PGVGEGNDLYPGGQYFDP 199
GL+YLGNP+LVHAQSI+A L QV+LMG E +R NG PGV + LYPGG FDP
Sbjct: 120 GSDGLNYLGNPSLVHAQSIIATLACQVILMGGAEAYRANGEGPGVEGLDSLYPGGP-FDP 178
Query: 200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWV 259
LGLADDP TFAELK KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +P NN +
Sbjct: 179 LGLADDPDTFAELKTKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPGVNNGFA 238
Query: 260 YATKFVP 266
ATKF P
Sbjct: 239 AATKFAP 245
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/246 (67%), Positives = 189/246 (76%), Gaps = 13/246 (5%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MA +A ++A ++ S R+T + RT A K P + WYGP+R +LG
Sbjct: 1 MAFALAKSSARAAVSRRSTVKVEARRTVKPASKASTP---------DSFWYGPERPLFLG 51
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
F+ + PSYLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGCI PE+L
Sbjct: 52 AFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLG 111
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
+ V F E VWFKAGAQIF EGGLDYLGNPNLVHAQSILA+LG QV+LMG +EG+R+NG
Sbjct: 112 SY-GVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNG 170
Query: 181 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
P +GEG D LYPGG FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 171 GP-LGEGLDKLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 228
Query: 240 GPLENL 245
GPL+NL
Sbjct: 229 GPLQNL 234
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 151/162 (93%), Positives = 158/162 (97%)
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA GCITPEVL+KW+RVDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQ
Sbjct: 1 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 60
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
V+LMGLVEGFRINGL GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS
Sbjct: 61 VILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 120
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
MFGFFVQAIVTGKGPLENLLDHL+NPVANNAW +ATKF PG+
Sbjct: 121 MFGFFVQAIVTGKGPLENLLDHLDNPVANNAWAFATKFAPGA 162
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 159/201 (79%), Positives = 172/201 (85%), Gaps = 4/201 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 174 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 231
Query: 229 GFFVQAIVTGKGPLENLLDHL 249
GFFVQAIVTGKGP+ENL DHL
Sbjct: 232 GFFVQAIVTGKGPIENLADHL 252
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/221 (70%), Positives = 179/221 (80%), Gaps = 4/221 (1%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGPDR K+LGPFS TP YLTGEFPGDYGWDTAGLSADP+ FAR R +E+IH RWA+L
Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALL 92
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALG +TPE+L ++ V F EPVWFKAGAQIF++GGL+YLGN +L+HAQSI+A L QVV
Sbjct: 93 GALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVV 152
Query: 169 LMGLVEGFRINGLPG--VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
LMGL E +R NG + + + LYPGG FDPLGLADDP TFAELKVKEIKNGRLAMFS
Sbjct: 153 LMGLAEAYRANGGSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFS 211
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP++NL DHL +P NNA+ ATKF PG
Sbjct: 212 CLGFFVQAIVTGKGPVQNLTDHLADPTVNNAFASATKFTPG 252
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 154/213 (72%), Positives = 173/213 (81%), Gaps = 2/213 (0%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR +LGP+S PSYL GEFPGDYGWDTAGLSADPE F R E+IH RWAML
Sbjct: 8 WYGPDRALWLGPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 67
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K+ V F E VWFKAG+QIF EGGLDYLGNP+LVHAQSILA+LG QVV
Sbjct: 68 GALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVV 127
Query: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
LMGL+E +R+NG P +GEG D G+ FDPLGLADDP TFAELK+KEIKNGRLAMFSMF
Sbjct: 128 LMGLIEAYRVNGGP-LGEGLDTLHPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMF 186
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYA 261
GF+VQAIVTGKGP+EN DH+ +P AW YA
Sbjct: 187 GFYVQAIVTGKGPIENWADHVADPFNVTAWNYA 219
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 160/221 (72%), Positives = 184/221 (83%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 28 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAML 87
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALG +TPE+L K V F E VWFKAGAQIF EGGL+YLGNP+L+HAQ+I+A L QV+
Sbjct: 88 GALGIVTPELLAK-NGVPFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVI 146
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
L+GLVEG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFS
Sbjct: 147 LLGLVEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSS 204
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FGFFVQAIVTGKGP++NL DHL NP NNA+ +ATK+ P +
Sbjct: 205 FGFFVQAIVTGKGPIQNLDDHLSNPGVNNAFAFATKYTPSA 245
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 162/222 (72%), Positives = 182/222 (81%), Gaps = 6/222 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGP+R K+LGP+S TP+Y +FPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 40 FYGPNRAKWLGPYSENATPAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 99
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG-FQV 167
GALGCITPE+L K F E VWFKAGAQIFSEGGLDYLGNP+LVHAQ+I G F+V
Sbjct: 100 GALGCITPELLAK-SGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIRRHPGRFKV 158
Query: 168 VLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
+LMGLVEG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFS
Sbjct: 159 ILMGLVEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 216
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
MFGFFVQAIVTGKGP++NL DHL NP NNA+ +ATKF P +
Sbjct: 217 MFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTPSA 258
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 313 bits (802), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 155/221 (70%), Positives = 178/221 (80%), Gaps = 4/221 (1%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGPDR K+LGPFS TP YLTGEFPGDYGWDTAGLSADP+ FAR R +E+IH RWA+L
Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALL 92
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALG +TPE+L ++ V F EPVWFKAGAQIF+ GGL+YLGN +L+HAQSI+A L QVV
Sbjct: 93 GALGILTPELLSQYAGVQFGEPVWFKAGAQIFAAGGLNYLGNESLIHAQSIIATLAVQVV 152
Query: 169 LMGLVEGFRINGLPG--VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
LMGL E +R NG + + + LYPGG FDPLGLADDP TFAELKVKEIKNGRLAMFS
Sbjct: 153 LMGLAEAYRANGGSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFS 211
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP++NL DHL +P NNA+ ATKF PG
Sbjct: 212 CLGFFVQAIVTGKGPVQNLTDHLADPTVNNAFASATKFTPG 252
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 313 bits (801), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 158/200 (79%), Positives = 171/200 (85%), Gaps = 4/200 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLG
Sbjct: 54 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLG 113
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 114 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWASQVIL 172
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 173 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAMFSMF 230
Query: 229 GFFVQAIVTGKGPLENLLDH 248
GFFVQAIVTGKGP+ENL DH
Sbjct: 231 GFFVQAIVTGKGPIENLADH 250
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 313 bits (801), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 158/201 (78%), Positives = 171/201 (85%), Gaps = 4/201 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 55 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 114
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 115 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 173
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 174 MGAVEGYRIAGGP-LGEITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAMFSMF 231
Query: 229 GFFVQAIVTGKGPLENLLDHL 249
GFF QAIVTGKGP+ENL DHL
Sbjct: 232 GFFXQAIVTGKGPIENLADHL 252
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/221 (69%), Positives = 178/221 (80%), Gaps = 4/221 (1%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
+YGPDR K+LGPFS TP YLTGEFPGDYGWDTAGLSADP+ FAR R +E+IH RWA+L
Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALL 92
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALG +TPE+L ++ V F EPVWFKAGAQIF++GGL+YLGN +L+HAQSI+A L QVV
Sbjct: 93 GALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVV 152
Query: 169 LMGLVEGFRINGLPG--VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
LMGL E +R NG + + + LYPGG FDPLGLADDP TFAELKVKEIKNGRLAMFS
Sbjct: 153 LMGLAEAYRANGGSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFS 211
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGP++NL DHL +P N A+ ATKF PG
Sbjct: 212 CLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/271 (62%), Positives = 184/271 (67%), Gaps = 37/271 (13%)
Query: 5 MAAAT-ASSSTSLRATP------FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVK 57
MAAAT A +S +L P G+ R T G K WYG DRV
Sbjct: 1 MAAATMALTSRALVGKPATSTRDVFGEGRITMRKTA-----GKPKPAASGSPWYGADRVL 55
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGP S Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 56 YLGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+R
Sbjct: 116 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR 174
Query: 178 INGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
I ADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 175 I------------------------ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 210
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 211 GKGPVENLADHLADPVNNNAWAYATNFVPGK 241
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 159/258 (61%), Positives = 195/258 (75%), Gaps = 7/258 (2%)
Query: 13 STSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS-AQTPSYLT 71
+++L + F+ +R T ++ K + T + WYGPDR K+LGP+S TPSYL
Sbjct: 2 ASALLSNSFVVSARRTVSSPKS----KGKQVTRASIEWYGPDRPKFLGPYSDGATPSYLK 57
Query: 72 GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV 131
GE+PGDYGWDTAGLSADPE F+R R +EVIH RWA+LG LG +TPE+LEK+ V F+E V
Sbjct: 58 GEYPGDYGWDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAV 117
Query: 132 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLY 191
WFKAGAQIFS GL+YLGNP+LVHAQSI+A + QV+L+GL EG+R+NG P + LY
Sbjct: 118 WFKAGAQIFSADGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYRVNGGPAGEITDPLY 177
Query: 192 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLEN 251
PGG FDPLGLADDP TFAELKVKEIKNGRLA F+ GFFVQAIVTGKGP++NL DHL +
Sbjct: 178 PGGA-FDPLGLADDPDTFAELKVKEIKNGRLAQFAALGFFVQAIVTGKGPIQNLEDHLAD 236
Query: 252 PVANNAW-VYATKFVPGS 268
P A N + + A KFVPG+
Sbjct: 237 PFAVNGFTIGAQKFVPGN 254
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/258 (64%), Positives = 188/258 (72%), Gaps = 13/258 (5%)
Query: 13 STSLRATPFLGQSRTTANALKDVVPM---GNAKYTMGNELWYGPDRVKYLGPFSAQTPSY 69
+++L F G S L+ VP GN + T +YGPDR +LGPF+ TPSY
Sbjct: 2 ASALLCNSFAGAS------LRSAVPTAGKGNRQVTRAAIEFYGPDRATFLGPFT-DTPSY 54
Query: 70 LTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKE 129
L GEFPGDYGWDTAGLSADPE FAR R +EVIH RWAMLGALGC+TPE+L K V F E
Sbjct: 55 LNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKN-GVSFGE 113
Query: 130 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL-PGVGEGN 188
VWFKAGAQIF GL+YLGN +LVHAQSI+A L QV+LMG E +R G PG+ +
Sbjct: 114 AVWFKAGAQIFGSDGLNYLGNSSLVHAQSIIATLACQVILMGGAEAYRAAGEGPGLEGLD 173
Query: 189 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 248
LYPGG FDPLGLADDP TF+ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH
Sbjct: 174 SLYPGGP-FDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDH 232
Query: 249 LENPVANNAWVYATKFVP 266
L +P NN + ATKF P
Sbjct: 233 LADPGVNNGFAAATKFAP 250
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 157/197 (79%), Positives = 169/197 (85%), Gaps = 4/197 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 60 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 119
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 120 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 178
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 179 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 236
Query: 229 GFFVQAIVTGKGPLENL 245
GFFVQAIVTGKGP+ENL
Sbjct: 237 GFFVQAIVTGKGPIENL 253
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 310 bits (793), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 157/197 (79%), Positives = 169/197 (85%), Gaps = 4/197 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 60 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 119
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 120 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 178
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 179 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 236
Query: 229 GFFVQAIVTGKGPLENL 245
GFFVQAIVTGKGP+ENL
Sbjct: 237 GFFVQAIVTGKGPIENL 253
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 310 bits (793), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 151/156 (96%), Positives = 153/156 (98%)
Query: 77 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAG 136
DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL+KW+RV FKEPVWFKAG
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 137 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQY 196
AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL GVGEGNDLYPGGQY
Sbjct: 61 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQY 120
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
FDPLGLADDPV FAELKVKEIKNGRLAMFSMFGFFV
Sbjct: 121 FDPLGLADDPVPFAELKVKEIKNGRLAMFSMFGFFV 156
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/220 (69%), Positives = 169/220 (76%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR +LGPFS PSYLTGEFPGDYGWDT GLSADP FA R EVIH RWAML
Sbjct: 128 WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 187
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K+ V EPVWFKAG+QIF+EGGLDYLGNP+LVHAQSILA+L QV+
Sbjct: 188 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVI 247
Query: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
LMG E +R+NG P GEG D G FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 248 LMGGAEAYRVNGGP-AGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSML 306
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWV--YATKFVP 266
GF+VQAI TGKGP+EN +H+ +P N ATKF P
Sbjct: 307 GFYVQAIATGKGPVENWAEHIADPAGVNGLTNGIATKFTP 346
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/220 (69%), Positives = 169/220 (76%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR +LGPFS PSYLTGEFPGDYGWDT GLSADP FA R EVIH RWAML
Sbjct: 115 WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 174
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K+ V EPVWFKAG+QIF+EGGLDYLGNP+LVHAQSILA+L QV+
Sbjct: 175 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVI 234
Query: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
LMG E +R+NG P GEG D G FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 235 LMGGAEAYRVNGGP-AGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSML 293
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWV--YATKFVP 266
GF+VQAI TGKGP+EN +H+ +P N ATKF P
Sbjct: 294 GFYVQAIATGKGPVENWAEHIADPAGVNGLTNGIATKFTP 333
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/247 (63%), Positives = 185/247 (74%), Gaps = 6/247 (2%)
Query: 22 LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWD 81
+ + + NA + V P +K + + WYGPDR +LG S + PSYLTGEFPGDYGWD
Sbjct: 17 VSRRQVQVNARRTVKP---SKGSTPDSAWYGPDRPLFLGSLSGEPPSYLTGEFPGDYGWD 73
Query: 82 TAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL-EKWLRVDFKEPVWFKAGAQIF 140
TAG SADP FAR R +EVIH RWA+LGALG +TPE+L + + +WFKAG++IF
Sbjct: 74 TAGFSADPTTFARYRTIEVIHARWALLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIF 133
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING-LPGVGEGNDLYPGGQYFDP 199
EGGL+YLGNPNL+HAQSILA L QV++MG EGFR NG PGV + LYPGG FDP
Sbjct: 134 KEGGLNYLGNPNLIHAQSILATLAVQVIVMGAAEGFRANGEAPGVEGLDTLYPGGP-FDP 192
Query: 200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWV 259
LGLADDP TFAELKVKEIKNGRLAMF+ FGFFVQAIVTGKGP++NL DHL +P NNA+
Sbjct: 193 LGLADDPDTFAELKVKEIKNGRLAMFACFGFFVQAIVTGKGPIQNLEDHLADPGVNNAFA 252
Query: 260 YATKFVP 266
ATKFVP
Sbjct: 253 SATKFVP 259
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/197 (79%), Positives = 169/197 (85%), Gaps = 4/197 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 60 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 119
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QV+L
Sbjct: 120 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVIL 178
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 179 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 236
Query: 229 GFFVQAIVTGKGPLENL 245
GFFVQAIVTGKGP+ENL
Sbjct: 237 GFFVQAIVTGKGPIENL 253
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/197 (79%), Positives = 169/197 (85%), Gaps = 4/197 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 39 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 98
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 99 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 157
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 158 MGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 215
Query: 229 GFFVQAIVTGKGPLENL 245
GFFVQAIVTGKGP+ENL
Sbjct: 216 GFFVQAIVTGKGPIENL 232
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/272 (63%), Positives = 189/272 (69%), Gaps = 16/272 (5%)
Query: 5 MAAAT-ASSSTSLRATP------FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVK 57
MAAAT A +S +L P G+ R T K WYG DRV
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTA-----AKPKPARSGSPWYGADRVL 55
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGP S PSYLTGEFPGDYGWDT GLSADPE FA+NR LEVIH RWA+ LGC+ PE
Sbjct: 56 YLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPE 115
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAG+QIFSEGGL + GNP+LVHAQSILA+ QVVLMG VEG+
Sbjct: 116 LLAR-NGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYH 174
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G +GE D LY GG FDPLGL DDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 175 VAG-GRLGEVVDPLYLGGS-FDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIV 232
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +PV NNAW YAT FVPG
Sbjct: 233 TGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 158/217 (72%), Positives = 175/217 (80%), Gaps = 5/217 (2%)
Query: 40 NAKYTMGNELWYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
AK + + +WYGPDR K+LGPFS P+YLTGEFPGDYGWDT+GLSADPE F R R +
Sbjct: 26 KAKPSKSDSVWYGPDRPKFLGPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTV 85
Query: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
EVIH RWAMLGALGCI PEVLEK+ V+F E VWFKAGAQIF++GGL+YLGNP LVHAQS
Sbjct: 86 EVIHARWAMLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHAQS 145
Query: 159 ILAVLGFQVVLMGLVEGFRINGL--PGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVK 215
I+A L QV+LMG VE +R NG G GEG D LYPGG FDPLGLADDP T AELKVK
Sbjct: 146 IVATLVVQVLLMGAVEIYRANGEGPSGFGEGQDNLYPGGA-FDPLGLADDPDTLAELKVK 204
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
E+KNGRLAM SM GFFVQAIVTGKGPL+NLL HLE P
Sbjct: 205 ELKNGRLAMMSMLGFFVQAIVTGKGPLDNLLTHLEEP 241
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 168/220 (76%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR +LGPFS PSYLTGEFPGDYGWDT GLSADP FA R EVIH RWAML
Sbjct: 128 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 187
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
G LGC+TPE+L K+ V EPVWFKAG+QIF+EGGLDYLGNP+LVHAQSILA+L QV+
Sbjct: 188 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVI 247
Query: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
LMG E +R+NG P GEG D G FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 248 LMGGAEAYRVNGGP-AGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSML 306
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVY--ATKFVP 266
GF+VQAI TGKGP+EN +H+ +P N ATKF P
Sbjct: 307 GFYVQAISTGKGPVENWAEHIADPSGVNGLTLATATKFTP 346
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 168/220 (76%), Gaps = 4/220 (1%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR +LGPFS PSYLTGEFPGDYGWDT GLSADP FA R EVIH RWAML
Sbjct: 127 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 186
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
G LGC+TPE+L K+ V EPVWFKAG+QIF+EGGLDYLGNP+LVHAQSILA+L QV+
Sbjct: 187 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVI 246
Query: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
LMG E +R+NG P GEG D G FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 247 LMGGAEAYRVNGGP-AGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSML 305
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVY--ATKFVP 266
GF+VQAI TGKGP+EN +H+ +P N ATKF P
Sbjct: 306 GFYVQAISTGKGPVENWAEHIADPSGVNGLTLATATKFTP 345
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/221 (71%), Positives = 174/221 (78%), Gaps = 5/221 (2%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR K+LGPFS TP YLTGEFPGDYGWDTAGLSADP FAR R +E+IH RWAML
Sbjct: 28 WYGPDRPKFLGPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAML 87
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+ PE+L K VWFKAGA IF++ GL+YLGNPNL+HAQSILA L FQVV
Sbjct: 88 GALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAFQVV 147
Query: 169 LMGLVEGFRINGLP--GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
+MG E FR NG G EGND LYPG Q FDP+GLA+DP TFAELKVKEIKNGRLAMF
Sbjct: 148 VMGAAESFRFNGGAPGGFLEGNDRLYPGDQ-FDPMGLAEDPDTFAELKVKEIKNGRLAMF 206
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
SMFGFFVQAIVTG+GP+ NL HL +P NNAW ATKFVP
Sbjct: 207 SMFGFFVQAIVTGQGPIANLDAHLADPSVNNAWAAATKFVP 247
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/197 (79%), Positives = 167/197 (84%), Gaps = 4/197 (2%)
Query: 73 EFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVW 132
FPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V F E VW
Sbjct: 2 RFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAK-NGVKFGEAVW 60
Query: 133 FKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LY 191
FKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R+ G P +GEG D LY
Sbjct: 61 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGP-LGEGLDPLY 119
Query: 192 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLEN 251
PGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +
Sbjct: 120 PGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLAD 178
Query: 252 PVANNAWVYATKFVPGS 268
P ANNAW YAT FVPG
Sbjct: 179 PTANNAWAYATNFVPGK 195
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 155/193 (80%), Positives = 166/193 (86%), Gaps = 4/193 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 23 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 82
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 83 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVIL 141
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 142 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 199
Query: 229 GFFVQAIVTGKGP 241
GFFVQAIVTGKGP
Sbjct: 200 GFFVQAIVTGKGP 212
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 303 bits (775), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 154/231 (66%), Positives = 178/231 (77%), Gaps = 4/231 (1%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRA 97
G+ + T + +YGPDR K+LGPFS PSYL GEFPGDYGWD+AGLSADPE FAR R
Sbjct: 20 GSRQVTRASVEFYGPDRAKWLGPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYRE 79
Query: 98 LEVIHGRWAMLGALGCITPEVLEKWLRVDFKEP-VWFKAGAQIFSEGGLDYLGNPNLVHA 156
+EVIH RWAMLGALGC+TPE+L+ DF E VWFKAGA IFS+ GL+YLGNP+L+HA
Sbjct: 80 IEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHA 139
Query: 157 QSILAVLGFQVVLMGLVEGFRINGL-PGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
QSI+AVL Q+V+MG E +R G P G+ LYPGG FDPLGLADDP T AELKVK
Sbjct: 140 QSIVAVLLTQLVIMGAAEAYRYAGEGPVETSGDSLYPGGA-FDPLGLADDPDTLAELKVK 198
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
E+KNGRLAMFSMFGFFVQA++TGK PLENL DHL +P N + ATKFVP
Sbjct: 199 ELKNGRLAMFSMFGFFVQALITGKSPLENLADHLADPSTANGFAVATKFVP 249
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 303 bits (775), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 153/218 (70%), Positives = 167/218 (76%), Gaps = 29/218 (13%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIHGRWAMLG
Sbjct: 62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLG 121
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+PNLVHAQSILA+L QV+L
Sbjct: 122 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVIL 180
Query: 170 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
MG +EG+R+ G PLG +VKE+KNGRLAMFSMFG
Sbjct: 181 MGAIEGYRVAG-----------------GPLG-----------EVKELKNGRLAMFSMFG 212
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
FFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 213 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 250
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 302 bits (774), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 148/208 (71%), Positives = 164/208 (78%), Gaps = 2/208 (0%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGPDR +LGPFS PSYLTGEFPGDYGWDT GLSADP FA R EVIH RWAML
Sbjct: 112 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 171
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K+ V EPVWFKAG+QIF+EGGLDYLGNP+L+HAQSILA+L QVV
Sbjct: 172 GALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLIHAQSILAILACQVV 231
Query: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
LMG E +R+NG P GEG D G FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 232 LMGGAEAYRVNGGP-AGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSML 290
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANN 256
GF+VQAI TGKGP+EN +H+ +P N
Sbjct: 291 GFYVQAIATGKGPVENWAEHIADPSGVN 318
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/221 (71%), Positives = 177/221 (80%), Gaps = 7/221 (3%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGPFS TPSYLTGEFPGDYGWDTAGL+ADP FA+ R E+IH RWAML
Sbjct: 139 WYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 198
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALG + PE L K V EPVWFKAGAQIFSEGGLDYLGN NLVHAQSILA+L FQVV
Sbjct: 199 GALGVVFPEALAK-AGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVV 257
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL E +R+NG P +GE +D LYPGG FDPLGLADDP TFAELKVKE+KNGRLAMF+M
Sbjct: 258 LMGLAEAYRVNGGP-LGEDSDALYPGGA-FDPLGLADDPETFAELKVKELKNGRLAMFAM 315
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAW--VYATKFVP 266
FGF+VQA+VTG+GP+EN H+ +P N VY T+F P
Sbjct: 316 FGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 356
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/221 (71%), Positives = 177/221 (80%), Gaps = 7/221 (3%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGPFS TPSYLTGEFPGDYGWDTAGL+ADP FA+ R E+IH RWAML
Sbjct: 379 WYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 438
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALG + PE L K V EPVWFKAGAQIFSEGGLDYLGN NLVHAQSILA+L FQVV
Sbjct: 439 GALGVVFPEALAK-AGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVV 497
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL E +R+NG P +GE +D LYPGG FDPLGLADDP TFAELKVKE+KNGRLAMF+M
Sbjct: 498 LMGLAEAYRVNGGP-LGEDSDALYPGGA-FDPLGLADDPETFAELKVKELKNGRLAMFAM 555
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAW--VYATKFVP 266
FGF+VQA+VTG+GP+EN H+ +P N VY T+F P
Sbjct: 556 FGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 596
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 95/118 (80%), Gaps = 5/118 (4%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
NLVHAQSILA+L FQVVLMGL E +R+NG P +GE +D LYPGG FDPLGLADDP TFA
Sbjct: 1 NLVHAQSILAILAFQVVLMGLAEAYRVNGGP-LGEDSDALYPGGA-FDPLGLADDPETFA 58
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAW--VYATKFVP 266
ELKVKE+KNGRLAMF+MFGF+VQA+VTG+GP+EN H+ +P N VY T+F P
Sbjct: 59 ELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 116
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 154/223 (69%), Positives = 175/223 (78%), Gaps = 16/223 (7%)
Query: 22 LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGW 80
L Q+++ N ++ V WYGPDR K+LGPFS PSYLTGEFPGDYGW
Sbjct: 12 LAQTKSIRNVSRNAVE------------WYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGW 59
Query: 81 DTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
DTAGLSADPE F R E+IH RWAMLGALGC+TPE+L K+ V F E VWFKAG+QIF
Sbjct: 60 DTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIF 119
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDP 199
EGGLDYLGN NL+HAQSILA+LG QVVLMGL+E +R+NG P +GEG D L+PG + FDP
Sbjct: 120 QEGGLDYLGNSNLIHAQSILAILGCQVVLMGLIEAYRVNGGP-LGEGLDPLHPGDK-FDP 177
Query: 200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
LGLADDP TFAELKVKEIKNGRLAMFSMFGF+VQAIVTGKGP+
Sbjct: 178 LGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 220
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 157/221 (71%), Positives = 177/221 (80%), Gaps = 7/221 (3%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGPFS TPSYLTGEFPGDYGWDTAGL+ADP FA+ R E+IH RWAML
Sbjct: 122 WYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 181
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALG + PE L K V EPVWFKAGAQIFSEGGLDYLGN NLVHAQSILA+L FQVV
Sbjct: 182 GALGVVFPEALAK-AGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVV 240
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL E +R+NG P +GE +D LYPGG FDPLGLADDP TFAELKVKE+KNGRLAMF+M
Sbjct: 241 LMGLAEAYRVNGGP-LGEDSDALYPGGA-FDPLGLADDPETFAELKVKELKNGRLAMFAM 298
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAW--VYATKFVP 266
FGF+VQA+VTG+GP+EN H+ +P N VY T+F P
Sbjct: 299 FGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 339
Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 157/221 (71%), Positives = 177/221 (80%), Gaps = 7/221 (3%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGPFS TPSYLTGEFPGDYGWDTAGL+ADP FA+ R E+IH RWAML
Sbjct: 362 WYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 421
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALG + PE L K V EPVWFKAGAQIFSEGGLDYLGN NLVHAQSILA+L FQVV
Sbjct: 422 GALGVVFPEALAK-AGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVV 480
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL E +R+NG P +GE +D LYPGG FDPLGLADDP TFAELKVKE+KNGRLAMF+M
Sbjct: 481 LMGLAEAYRVNGGP-LGEDSDALYPGGA-FDPLGLADDPETFAELKVKELKNGRLAMFAM 538
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAW--VYATKFVP 266
FGF+VQA+VTG+GP+EN H+ +P N VY T+F P
Sbjct: 539 FGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 579
Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 157/221 (71%), Positives = 177/221 (80%), Gaps = 7/221 (3%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGPFS TPSYLTGEFPGDYGWDTAGL+ADP FA+ R E+IH RWAML
Sbjct: 602 WYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 661
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALG + PE L K V EPVWFKAGAQIFSEGGLDYLGN NLVHAQSILA+L FQVV
Sbjct: 662 GALGVVFPEALAK-AGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVV 720
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL E +R+NG P +GE +D LYPGG FDPLGLADDP TFAELKVKE+KNGRLAMF+M
Sbjct: 721 LMGLAEAYRVNGGP-LGEDSDALYPGGA-FDPLGLADDPETFAELKVKELKNGRLAMFAM 778
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAW--VYATKFVP 266
FGF+VQA+VTG+GP+EN H+ +P N VY T+F P
Sbjct: 779 FGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 819
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 79/101 (78%), Gaps = 5/101 (4%)
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGL E +R+NG P +GE +D LYPGG FDPLGLADDP TFAELKVKE+KNGRLAMF+M
Sbjct: 1 LMGLAEAYRVNGGP-LGEDSDALYPGGA-FDPLGLADDPETFAELKVKELKNGRLAMFAM 58
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAW--VYATKFVP 266
FGF+VQA+VTG+GP+EN H+ +P N VY T+F P
Sbjct: 59 FGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 99
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 163/270 (60%), Positives = 191/270 (70%), Gaps = 18/270 (6%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MAS++AA+ A + + R QS +A A K V T + +YGPDR K+LG
Sbjct: 1 MASVVAASRAFTGITAR------QSTKSAKARKQV--------TRASVEFYGPDRAKFLG 46
Query: 61 PFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
PFS PSYL GEFPGDYGWDTAGLSADPE FAR R +E+IH RWA+LGALG +TPE L
Sbjct: 47 PFSEGAVPSYLKGEFPGDYGWDTAGLSADPETFARYREIELIHSRWALLGALGILTPEYL 106
Query: 120 EKWLRVDFKEP-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
++ VDF E VWFKAGA IF + GL+YLGNP L+HAQSI+A L Q+VL+G E +R
Sbjct: 107 QRSGAVDFGEAAVWFKAGASIFGDDGLNYLGNPQLIHAQSIVATLLAQIVLVGTAEAYRY 166
Query: 179 NGL-PGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G P G+ LYPGG +FDPLGL DDP AELKVKEIKNGRLA S+FGFFVQA+VT
Sbjct: 167 AGEGPVDTSGDKLYPGG-FFDPLGLGDDPEALAELKVKEIKNGRLAQVSVFGFFVQALVT 225
Query: 238 GKGPLENLLDHLENPVANNAWVYATKFVPG 267
GKGPLENL DHL +P NN + YA KFVPG
Sbjct: 226 GKGPLENLDDHLADPWNNNGFAYAAKFVPG 255
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 299 bits (766), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 150/224 (66%), Positives = 175/224 (78%), Gaps = 4/224 (1%)
Query: 16 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP 75
+ A F+G S+ + + K + + +WYGPDR ++LGPFS PSYLTGEFP
Sbjct: 4 ISAKTFIG-SQVANKKMVTSMRRTQKKSSAPDNVWYGPDRPQFLGPFSGDCPSYLTGEFP 62
Query: 76 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKA 135
GDYGWDTAGLSADPE F R R E+IH RWAMLGALGC+TPE+L K+ V F E VWFKA
Sbjct: 63 GDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKA 122
Query: 136 GAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGG 194
G+QIF EGGLDYLGN NLVHAQSILA+LG QV+LMG +E +R+NG P +GEG D LYPG
Sbjct: 123 GSQIFQEGGLDYLGNSNLVHAQSILAILGCQVLLMGAIEAYRVNGGP-LGEGLDPLYPGD 181
Query: 195 QYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
+ FDPLGLADDP TFAELK+KEIKNGRLAMFSMFGF+VQA+VTG
Sbjct: 182 K-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTG 224
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 154/194 (79%), Positives = 166/194 (85%), Gaps = 4/194 (2%)
Query: 76 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKA 135
GDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K V F E VWFKA
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAK-NGVKFGEAVWFKA 59
Query: 136 GAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGG 194
GAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P +GEG D +YPGG
Sbjct: 60 GAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP-LGEGLDKVYPGG 118
Query: 195 QYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVA 254
FDPLGLADDP T AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVA
Sbjct: 119 A-FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVA 177
Query: 255 NNAWVYATKFVPGS 268
NNAW YAT FVPG+
Sbjct: 178 NNAWAYATNFVPGN 191
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 168/272 (61%), Positives = 182/272 (66%), Gaps = 40/272 (14%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A S+SL L R N L V A+ TM +WYGPDR K
Sbjct: 1 MATASAIQSSSLAGQTLL---RPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L K V F E VWFK A+ QVVLMGL+EG+R
Sbjct: 118 LLAK-TGVKFGEAVWFK--------------------------AIWASQVVLMGLIEGYR 150
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ G P +GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIV
Sbjct: 151 VGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 208
Query: 237 TGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
TGKGP+ENL DHL +P ANNAW YAT FVPG
Sbjct: 209 TGKGPIENLFDHLADPTANNAWAYATNFVPGK 240
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/221 (72%), Positives = 171/221 (77%), Gaps = 9/221 (4%)
Query: 18 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD 77
A+ LG+ R T G AK WYG DRVKYLGPFS + PSYLTGEFPGD
Sbjct: 22 ASDLLGEGRVTMRKTG-----GRAKPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGD 76
Query: 78 YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGA 137
YGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGA
Sbjct: 77 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGA 135
Query: 138 QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQY 196
QIFSEGGLDYLGNPNLVHAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG
Sbjct: 136 QIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRIGGGP-LGEVVDPLYPGGS- 193
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/224 (66%), Positives = 174/224 (77%), Gaps = 4/224 (1%)
Query: 16 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP 75
+ A F+G T + + K + + +WYGP+R ++LGPFS PSYLTGEFP
Sbjct: 4 ISAKTFIGSQAVTTKKVTSMRRT-QKKSSAPDSVWYGPERPQFLGPFSGDCPSYLTGEFP 62
Query: 76 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKA 135
GDYGWDTAGLSADPE F R R E+IH RWAMLGALGC+TPE+L K+ V F E VWFKA
Sbjct: 63 GDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGGVSFGESVWFKA 122
Query: 136 GAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGG 194
G+QIF EGGLDYLGN +LVHAQ ILA+LG QV+LMG +E +R+NG P +GEG D LYPGG
Sbjct: 123 GSQIFQEGGLDYLGNSSLVHAQYILAILGCQVLLMGAIEAYRVNGGP-LGEGLDPLYPGG 181
Query: 195 QYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
Q FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGF+VQA+VTG
Sbjct: 182 Q-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQALVTG 224
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 156/220 (70%), Positives = 167/220 (75%), Gaps = 24/220 (10%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPF + PSYLTGEFPGDYGW+TAGLSADPE FA+NR LEVIH RWAM
Sbjct: 33 WYGPDRVKYLGPFFGEAPSYLTGEFPGDYGWNTAGLSADPETFAKNRELEVIHSRWAMFD 92
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
WFKA +QIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 93 R---------------------WFKARSQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 131
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP F ELKVKEIKNGRLAMFSMF
Sbjct: 132 MGAVEGYRIAGGP-LGEVIDPLYPGGS-FDPLGLADDPEAFVELKVKEIKNGRLAMFSMF 189
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGPLENL DHL +PV NNAW +AT FV G
Sbjct: 190 GFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVLGK 229
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 166/249 (66%), Positives = 180/249 (72%), Gaps = 18/249 (7%)
Query: 5 MAAATASSSTS---------LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
M A T S S+S L + +G++R T K V AK WYG DR
Sbjct: 1 MVATTMSLSSSSFAGKAVKNLPSPAHIGEARVTMR--KTAV---KAKQVSSGSPWYGSDR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
V YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 115
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG
Sbjct: 116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEG 174
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 175 YRIAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 235 IVTGKGPLE 243
IVTG P
Sbjct: 233 IVTGGEPCR 241
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 151/208 (72%), Positives = 164/208 (78%), Gaps = 3/208 (1%)
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GP S+ TPSYL GEFPGDYGWDTAGLSADPE FAR R +EVIH RWAMLGALGC+TPE+L
Sbjct: 5 GPLSSATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELL 64
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
+ F+EPVW+KAGAQI S GLDYLG PNLVHAQSI+A L QV+LMG E +R
Sbjct: 65 SQ-NGFTFQEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAA 123
Query: 180 G-LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G PGV + LYPGG FDPL A DP T AELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 124 GSAPGVDGLDKLYPGGP-FDPLEFASDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTG 182
Query: 239 KGPLENLLDHLENPVANNAWVYATKFVP 266
KGPLENL DHL +P ANN + ATKFVP
Sbjct: 183 KGPLENLNDHLASPYANNGFAAATKFVP 210
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 149/197 (75%), Positives = 163/197 (82%), Gaps = 4/197 (2%)
Query: 73 EFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVW 132
EFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+ PE+L + V F E VW
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVW 59
Query: 133 FKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LY 191
FKAG+QIFSEGGLDYLGNP+LVHAQSIL V QV+LMG VEG+RI G P +GE D LY
Sbjct: 60 FKAGSQIFSEGGLDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIAGGP-LGEVVDPLY 118
Query: 192 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLEN 251
PGG FDPLGLA+ P FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +
Sbjct: 119 PGGS-FDPLGLAEIPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 177
Query: 252 PVANNAWVYATKFVPGS 268
PV NNAW YAT F PG
Sbjct: 178 PVNNNAWAYATNFAPGK 194
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/196 (77%), Positives = 164/196 (83%), Gaps = 5/196 (2%)
Query: 75 PGDYGWDTA-GLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWF 133
PGDYGWDT+ GLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWF
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWF 59
Query: 134 KAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYP 192
KAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI G P +GE D LYP
Sbjct: 60 KAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYP 118
Query: 193 GGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
GG FDPLGLA+DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +P
Sbjct: 119 GGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 177
Query: 253 VANNAWVYATKFVPGS 268
V NNAW YAT FVPG
Sbjct: 178 VNNNAWAYATNFVPGK 193
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 146/228 (64%), Positives = 170/228 (74%), Gaps = 9/228 (3%)
Query: 40 NAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALE 99
AK G WYG DR YLG F+ ++PSYL GEFPGDYGWDTAGLSADPE F+R R +E
Sbjct: 56 KAKSASGASFWYGADRPGYLGAFT-RSPSYLNGEFPGDYGWDTAGLSADPETFSRYREIE 114
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
VIH RWAMLGALG + PE+L++ V WF AGA IF G+ YLG P L++A++I
Sbjct: 115 VIHARWAMLGALGIVVPELLDQTNHV-----AWFDAGATIFGPKGIQYLGVPGLINAKNI 169
Query: 160 LAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIK 218
+A + QV+LMG +EG+R+NG P GEG D +YPG + FDPLGLADDP TFAELKVKEIK
Sbjct: 170 IATVAVQVILMGAIEGYRVNGGP-AGEGLDKVYPG-ESFDPLGLADDPDTFAELKVKEIK 227
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
NGRLAMFS FGFFVQAIVTGKGP+ NL DHL NP NN + ATKF P
Sbjct: 228 NGRLAMFSNFGFFVQAIVTGKGPIANLNDHLANPTVNNGFAAATKFTP 275
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 286 bits (731), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 140/198 (70%), Positives = 164/198 (82%), Gaps = 3/198 (1%)
Query: 70 LTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKE 129
LTGEFPGDYGWDTAGLSADPE F + R E+IH RWAMLGALGC+TPE+L ++ F E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 130 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND 189
VWF+AGAQIF +GGLDYLG+P L+HAQSI A++ QV+LMGL+EG+R+NG P GEG D
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGP-AGEGLD 119
Query: 190 -LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 248
LYP G+ FDPLGLADDP TFAELK+KEIKNGRLAMFSMFGF+VQAIVTGKGP+EN +H
Sbjct: 120 PLYP-GESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEH 178
Query: 249 LENPVANNAWVYATKFVP 266
+ +P NA+ YATKF P
Sbjct: 179 VADPFTANAFSYATKFTP 196
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 145/196 (73%), Positives = 160/196 (81%), Gaps = 6/196 (3%)
Query: 46 GNE---LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIH 102
GNE +YGPDR +LGP S TP+YLTGEFPGDYGWD+AGLSADPE F R R LE+IH
Sbjct: 39 GNEKLGAFYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIH 98
Query: 103 GRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV 162
RWAMLGALGC+TPE+L K EPVWFKAGAQIF EGGLDYLGN L+HAQSILA
Sbjct: 99 ARWAMLGALGCVTPELLAK-NGTPIAEPVWFKAGAQIFQEGGLDYLGNAGLIHAQSILAT 157
Query: 163 LGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
L QV+LMG +EG+R+NG P GEG D L+PGGQ+FDPLGLA+DP FAELKVKEIKNGR
Sbjct: 158 LAVQVILMGAIEGYRVNGGP-AGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGR 216
Query: 222 LAMFSMFGFFVQAIVT 237
LAMFSMFGFFVQAIVT
Sbjct: 217 LAMFSMFGFFVQAIVT 232
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 282 bits (722), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 147/219 (67%), Positives = 167/219 (76%), Gaps = 5/219 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
+YGPD Q P TGEFPGDYGWDTAGLSADPE F R R LE+IH R +LG
Sbjct: 57 FYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLG 115
Query: 110 ALGCITPEVLEKWLRVDFKEP-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
ALG +TPE+L + F + +WFKAGA IF +GGL+YLGNP+L+HAQ+I+A L QVV
Sbjct: 116 ALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVV 175
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGLVEG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMF+
Sbjct: 176 LMGLVEGYRVNGGP-AGEGLDPLYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFAC 233
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
GFFVQAIVTGKGP+ENL DHL NP NNA+ YATKF P
Sbjct: 234 LGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/215 (70%), Positives = 166/215 (77%), Gaps = 5/215 (2%)
Query: 55 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCI 114
RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSA PE FA+NR LEVIH R AM ALGCI
Sbjct: 58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCI 117
Query: 115 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
PE+L + F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ +V+LMG VE
Sbjct: 118 FPELLSV-MGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVE 176
Query: 175 GFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
G+RI P +GE D LYPG FD LGLA+D FAELKVKE+KNGRLAMFSMFGFFVQ
Sbjct: 177 GYRIARGP-LGEVTDPLYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQ 233
Query: 234 AIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
AIV+ K LENL DHL V NNA T FVPG+
Sbjct: 234 AIVSRKDRLENLADHLGWTVNNNALSNVTNFVPGN 268
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 280 bits (716), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 150/255 (58%), Positives = 176/255 (69%), Gaps = 8/255 (3%)
Query: 16 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL-----WYGPDRVKYLGPFSAQTPSYL 70
+ A F Q A A + A+ T + +YGP+R +LG S + P+YL
Sbjct: 1 MSAVAFRAQRAVAAKAGRKTTVSVQARRTQAKKAVPESPFYGPNRPLFLGGLSGEPPAYL 60
Query: 71 TGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEP 130
GEFPGDYGWDTAGLSADPE F R R LE+IH RWA+LGALGC+ PE+L + +
Sbjct: 61 NGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALLGALGCVVPELLARNGVAMPADG 120
Query: 131 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND- 189
VWFK GA+IF EGGL+YLGN NLVHAQSI+A L Q+VLMG EG+RING P +GEG D
Sbjct: 121 VWFKVGAEIFKEGGLNYLGNENLVHAQSIVATLLVQLVLMGWAEGYRINGGP-LGEGLDP 179
Query: 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
LYPGG FDPLGLADDP T AELKVKE+KNGR+AM +MFGF VQAIVT KGPLENL DHL
Sbjct: 180 LYPGGA-FDPLGLADDPDTLAELKVKELKNGRMAMAAMFGFLVQAIVTQKGPLENLADHL 238
Query: 250 ENPVANNAWVYATKF 264
P NN + A +
Sbjct: 239 AAPGTNNVFSNAATY 253
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 150/233 (64%), Positives = 169/233 (72%), Gaps = 6/233 (2%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRA 97
G +K G WYGPDR K+LGP+S A TP YL GE PGDYGWD+AGL ADP R R
Sbjct: 214 GGSKAPAGLSQWYGPDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYRE 273
Query: 98 LEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQ 157
E+IHGRWAMLGALG + PE L + + EPVWFKAGAQIFSEGGLDYLG+ LVHAQ
Sbjct: 274 AELIHGRWAMLGALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQ 333
Query: 158 SILAVLGFQVVLMGLVEGFRI-NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVK 215
SIL +LG QV+LMG E +R NGL G+ D LYPGG FDPLGLA+DP T AELKVK
Sbjct: 334 SILLILGTQVLLMGAAEAYRTGNGLGNFGKDLDSLYPGGP-FDPLGLANDPDTLAELKVK 392
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAW--VYATKFVP 266
EIKNGRLAMF+MFGF+VQAIVTG+ PLENL HL +P N Y T+F P
Sbjct: 393 EIKNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPFTVNGLNAAYMTQFTP 445
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/223 (64%), Positives = 169/223 (75%), Gaps = 7/223 (3%)
Query: 50 WYGPDRVKYLGPFSAQT-PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGP+S ++ PSYLTGE PGDYGWDTAGL ADP R R E+IHGRWAML
Sbjct: 468 WYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAML 527
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GA+GC PE L ++ V F EP+WFKAGAQIFS GL+Y G P L+HA+S+LA+L QV+
Sbjct: 528 GAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVL 587
Query: 169 LMGLVEGFRI-NGLPG-VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
LMG VE +R N PG GE D LYPGG FDPLGLADDP TFAELKVKEIKNGRLAM
Sbjct: 588 LMGAVEAYRAGNTAPGQFGEDLDRLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMM 646
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYA--TKFVP 266
+M GF+ QAIVTG+GP+EN L HL++P A+N A T+F P
Sbjct: 647 AMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTAALVTQFAP 689
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/206 (65%), Positives = 154/206 (74%), Gaps = 6/206 (2%)
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
PSYLTGE PGDYGWDTAGL ADP R R E+IHGRWAMLGA+GC PE L ++ V
Sbjct: 1 VPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGV 60
Query: 126 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-NGLPG- 183
F EP+WFKAGAQIFS GL+Y G P L+HA+S+LA+L QV+LMG VE +R N PG
Sbjct: 61 QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQ 120
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
GE D LYPGG FDPLGLADDP TFAELKVKEIKNGRLAM +M GF+ QAIVTG+GP+
Sbjct: 121 FGEDLDRLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPV 179
Query: 243 ENLLDHLENPVANNAWVYA--TKFVP 266
EN L HL++P A+N A T+F P
Sbjct: 180 ENWLYHLQDPSAHNGLTAALVTQFAP 205
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/188 (78%), Positives = 157/188 (83%), Gaps = 4/188 (2%)
Query: 82 TAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFS 141
TAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFS
Sbjct: 2 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFS 60
Query: 142 EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPL 200
EGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPL
Sbjct: 61 EGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPL 118
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVY 260
GLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +
Sbjct: 119 GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAF 178
Query: 261 ATKFVPGS 268
AT FVPG
Sbjct: 179 ATNFVPGK 186
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/221 (65%), Positives = 161/221 (72%), Gaps = 7/221 (3%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
N WYG +R KYLGPF + TP+YLTGEFPGDYGWD+AGLSADP F R EVIH RWA
Sbjct: 86 NVEWYGENRPKYLGPFQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWA 145
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGCI PE+L F PVWFKAG IF E G+DYLGNPNLVHAQS LAVL Q
Sbjct: 146 MLGALGCIFPELLNS---AGFNLPVWFKAGGTIF-ENGIDYLGNPNLVHAQSALAVLSVQ 201
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
VVLMG E +R NG P +GE D LYPGG FDPLG A DP AELKVKEIKNGRLAM
Sbjct: 202 VVLMGASEAYRFNGGP-LGEPADVLYPGGA-FDPLGFAKDPSKAAELKVKEIKNGRLAMT 259
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
+M G++VQA+ TGKGP+ENL +HL +P NN + A F P
Sbjct: 260 AMLGYYVQALATGKGPIENLSEHLADPSKNNGFAVAGVFTP 300
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/244 (61%), Positives = 179/244 (73%), Gaps = 11/244 (4%)
Query: 25 SRTTANALKDVVPMGNAKYTMGNEL-WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDT 82
+RTT + K + G++L WYGP R K+LGP+S TPSYLTGEFPGDYGWDT
Sbjct: 12 ARTTKSGKATTKKSTTKKASSGSKLSWYGPSRPKFLGPYSDGATPSYLTGEFPGDYGWDT 71
Query: 83 AGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSE 142
AGLSADP+ FAR R +EVIH RWAMLGALGC+ PE+L+ + WF AGA IFS+
Sbjct: 72 AGLSADPQTFARYREIEVIHARWAMLGALGCVVPELLDGTNHI-----AWFNAGATIFSD 126
Query: 143 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLG 201
GL YLG P L++A+SI+A L QV+LM VEG+R+NG P G G D +YPGG FDPLG
Sbjct: 127 DGLQYLGIPGLINAKSIVATLIVQVILMSYVEGYRVNGGP-AGTGLDAVYPGGS-FDPLG 184
Query: 202 LADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAW-VY 260
LADDP TF+ELKVKEIKNGRLAM SMFGFF+QAIVTG+GP+ENL HL + ANN + +Y
Sbjct: 185 LADDPDTFSELKVKEIKNGRLAMLSMFGFFIQAIVTGEGPIENLNKHLADASANNFYSLY 244
Query: 261 ATKF 264
A+
Sbjct: 245 ASTL 248
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/210 (69%), Positives = 161/210 (76%), Gaps = 8/210 (3%)
Query: 29 ANALKDVVPMGNAKYTMG-----NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTA 83
A A + VV + + G + +WYGPDR KYLG S +TP+YLTGEF GDYGWDTA
Sbjct: 16 ARAQRRVVKVEARRTVKGASSAPDSVWYGPDRPKYLGWLSGETPAYLTGEFAGDYGWDTA 75
Query: 84 GLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEG 143
GLSADPE F R R LE+IH RWAMLGALGCITPE+L EPVWFKAGAQIF +G
Sbjct: 76 GLSADPETFKRYRELELIHARWAMLGALGCITPELLAN-NGTPIAEPVWFKAGAQIFQDG 134
Query: 144 GLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGL 202
GL+YLGN NLVHAQSI+ L QV+LMG VEG+R+NG P GEG D LYPGG +FDPLGL
Sbjct: 135 GLNYLGNENLVHAQSIIVTLLVQVILMGTVEGYRVNGGP-AGEGLDKLYPGGDFFDPLGL 193
Query: 203 ADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
ADDP TFAELKVKEIKNGRLAMFSMFGFFV
Sbjct: 194 ADDPDTFAELKVKEIKNGRLAMFSMFGFFV 223
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/279 (58%), Positives = 183/279 (65%), Gaps = 29/279 (10%)
Query: 4 IMAAATASSSTSLRATPF--------LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
+ A++ A SS +L P LG SR T K WYGPDR
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQELGASRFTTRKSATT-----KKVASSGSPWYGPDR 55
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGR------WAMLG 109
VKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+N +L W +
Sbjct: 56 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNVSLRSSTPDGPCWVPWDVSS 115
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
C P + +++ FKAG+QIFSEGGLDYLGNP+L QSILA+ QV+L
Sbjct: 116 QSFC--PVTVLNSVKL-----CGFKAGSQIFSEGGLDYLGNPSLGSRQSILAIWATQVIL 168
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLA+DP FAELKVKE+KNGRLAMFSMF
Sbjct: 169 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMF 226
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 227 GFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPG 265
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 277 bits (708), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 145/189 (76%), Positives = 157/189 (83%), Gaps = 4/189 (2%)
Query: 81 DTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
DTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIF
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIF 59
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDP 199
SEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG FDP
Sbjct: 60 SEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDP 117
Query: 200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWV 259
LGLADDP FAELKVKEIKNG LAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW
Sbjct: 118 LGLADDPDAFAELKVKEIKNGMLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 177
Query: 260 YATKFVPGS 268
YAT FVPG
Sbjct: 178 YATNFVPGK 186
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 141/186 (75%), Positives = 157/186 (84%), Gaps = 5/186 (2%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TP++L K V F E +WFKAGAQIF EGGLDYLGN +LVHAQ+I+A L QV+
Sbjct: 97 GALGCVTPKLLSK-NGVQFSEALWFKAGAQIFQEGGLDYLGNLSLVHAQNIVATLACQVI 155
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGLVEG+R+NG P GEG D LYP G+ FDPLGLADDP TFAELKVKEIKNGRLAMFSM
Sbjct: 156 LMGLVEGYRVNGGP-AGEGLDPLYP-GKSFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 213
Query: 228 FGFFVQ 233
FGFFVQ
Sbjct: 214 FGFFVQ 219
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/273 (57%), Positives = 182/273 (66%), Gaps = 22/273 (8%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLG 60
A+S+ +L + G++ + A +V G + TM WYG DRVKYLG
Sbjct: 2 AASTMALSSPALTGKAVKLSPAASEV--FGTGRITMRKASKPTGPSGSPWYGSDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLG----NPNLVHAQSILAVLGFQVVLMG-LVEG 175
+ V F E VW + F++ +G P+LVHAQ + LG+ G L+
Sbjct: 120 R-NGVKFGEAVWVQG---WFTDLQRRRIGPTWATPSLVHAQEHFSHLGYSSYPHGSLLRA 175
Query: 176 FRINGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
R+ G +GE DL YPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 176 TRVPGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQA 234
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
IVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 235 IVTGKGPLENLADHLADPVNNNAWAFATNFVPG 267
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/223 (64%), Positives = 169/223 (75%), Gaps = 7/223 (3%)
Query: 50 WYGPDRVKYLGPFSAQT-PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGP+S ++ PSYLTGE PGDYGWDTAGL ADP R R E+IHGRWAML
Sbjct: 241 WYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAML 300
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GA+GC PE L ++ V F EP+WFKAGAQIFS GL+Y G P L+HA+S+LA+L QV+
Sbjct: 301 GAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVL 360
Query: 169 LMGLVEGFRI-NGLPG-VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
LMG VE +R N PG GE D LYPGG FDPLGLADDP TFAELKVKEIKNGRLAM
Sbjct: 361 LMGAVEAYRAGNTAPGQFGEDLDRLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMV 419
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYA--TKFVP 266
+M GF+ QAIVTG+GP+EN L HL++P A+N A T+F P
Sbjct: 420 AMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTAALVTQFAP 462
Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 144/219 (65%), Positives = 163/219 (74%), Gaps = 6/219 (2%)
Query: 53 PDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 111
PDR K+LGP+S A TP YL GE PGDYGWD+AGL ADP R R E+IHGRWAMLGAL
Sbjct: 1 PDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGAL 60
Query: 112 GCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
G + PE L + + EPVWFKAGAQIFSEGGLDYLG+ LVHAQSIL +LG QV+LMG
Sbjct: 61 GVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMG 120
Query: 172 LVEGFRI-NGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
E +R NGL G+ D LYPGG FDPLGLA+DP T AELKVKEIKNGRLAMF+MFG
Sbjct: 121 AAEAYRTGNGLGNFGKDLDSLYPGGP-FDPLGLANDPDTLAELKVKEIKNGRLAMFAMFG 179
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANNAW--VYATKFVP 266
F+VQAIVTG+ PLENL HL +P N Y T+F+P
Sbjct: 180 FYVQAIVTGESPLENLSAHLASPFTVNGLNAAYMTQFMP 218
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/178 (78%), Positives = 151/178 (84%), Gaps = 4/178 (2%)
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 1 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 60
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+L + V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+R
Sbjct: 61 LLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYR 119
Query: 178 INGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
I G P +GE D +YPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 120 IAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 175
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/208 (64%), Positives = 154/208 (74%), Gaps = 3/208 (1%)
Query: 51 YGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA 110
YGPDRVK+LG F+ P YLTGE PGDYGWDTAGL ADP AR R +VIHGRWAMLG
Sbjct: 838 YGPDRVKWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAMLGV 897
Query: 111 LGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLM 170
LGC PE + +W V F EPVWFKAGAQIFSE GL+YLG P L+HAQS++ +VLM
Sbjct: 898 LGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQSVVLTFLSTLVLM 957
Query: 171 GLVEGFRINGLPGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
G VE +R G G + + LYPGG FDPLGLADDP F ELKVKE+KNGRLAM ++F
Sbjct: 958 GAVEAYRSAGSVGDFGADLDPLYPGGP-FDPLGLADDPEAFLELKVKEVKNGRLAMVAIF 1016
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANN 256
GFFVQ I+TGKGP+EN +DHL +P NN
Sbjct: 1017 GFFVQGILTGKGPVENWVDHLTDPFVNN 1044
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/220 (59%), Positives = 158/220 (71%), Gaps = 9/220 (4%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP AR R EVIH RWAMLG
Sbjct: 595 WYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLG 654
Query: 110 ALGCITPEVLEKWLRVDFKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
ALG +TPE+L V F E VW+KAGAQIFS GL+YLGNP+L+HAQS++ +
Sbjct: 655 ALGVVTPELLAG-NGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 713
Query: 169 LMGLVEGFRINGLPGVGEG----NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
+MG VE +R G GVG+ + LYPGG FDPLGLA+DP AELKVKE+KNGRLAM
Sbjct: 714 IMGAVEAYRYGG--GVGDSGRELDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAM 770
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
+M GF+VQ +VT GP+ENL HL +P ANN + + + F
Sbjct: 771 VAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGF 810
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 132/220 (60%), Positives = 158/220 (71%), Gaps = 9/220 (4%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP AR R EVIH RWAMLG
Sbjct: 134 WYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLG 193
Query: 110 ALGCITPEVLEKWLRVDFKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
ALG +TPE+L V F E VW+KAGAQIFS GL+YLGNP+L+HAQS++ +
Sbjct: 194 ALGVVTPELLAG-NGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 252
Query: 169 LMGLVEGFRINGLPGVG----EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
+MG VE +R G GVG E + LYPGG FDPLGLA+DP AELKVKE+KNGRLAM
Sbjct: 253 IMGAVEAYRYGG--GVGDFGRELDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAM 309
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
+M GF+VQ +VT GP+ENL HL +P ANN + + + F
Sbjct: 310 VAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGF 349
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 121/225 (53%), Positives = 146/225 (64%), Gaps = 3/225 (1%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFSA-QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRA 97
G A + WYGP+R K+LGP S P YL GE+ GDYG+DTAGL+ADP+ F R R
Sbjct: 348 GFAMFAATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRD 407
Query: 98 LEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQ 157
E+ +GRWAMLG LGC+ PEVL V + EPVWFK GA I + G +DYL NP L+HA
Sbjct: 408 AELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHAS 467
Query: 158 SILAVLGFQVVLMGLVEGFRINGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKE 216
++L L ++V E +R G +G+ D YPGG FDPLGL+ DP FAE KVKE
Sbjct: 468 NLLLTLVLELVFFFAAETWREAGEGPLGKAQDKSYPGG-VFDPLGLSKDPAAFAEAKVKE 526
Query: 217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYA 261
+KNGRLAM +M G FVQA VTG+ PLENL HL NP N YA
Sbjct: 527 VKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVNFWTSYA 571
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 154 VHAQSILAVLGFQVVLMGLVEGFRINGLPGV--GEGNDLYPGGQYFDPLGLADDPVTFAE 211
+HAQS++ +VLMG VE +R G G + + LYPGG FDPLGLADDP F E
Sbjct: 1 IHAQSVVLTFLSTLVLMGAVEAYRSAGSVGDFGADLDPLYPGGP-FDPLGLADDPEAFLE 59
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
LKVKE+KNGRLAM ++FGF VQ I+TGKGP+EN +DHL +P NN + + F
Sbjct: 60 LKVKEVKNGRLAMVAIFGFSVQGILTGKGPVENWVDHLTDPFENNLFQLTSGF 112
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 144/219 (65%), Positives = 161/219 (73%), Gaps = 6/219 (2%)
Query: 5 MAAATASSSTSL--RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
MA AT + S+S +A +N + + +K WYGPDRVKYLGPF
Sbjct: 1 MATATMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPF 60
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR- 119
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G P
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 179
Query: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNG 220
+GE D LYPGG FDPLGLADDP FAELKVKEIKNG
Sbjct: 180 -LGEVTDPLYPGGS-FDPLGLADDPKAFAELKVKEIKNG 216
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 139/182 (76%), Positives = 150/182 (82%), Gaps = 4/182 (2%)
Query: 88 DPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDY 147
D E FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDY
Sbjct: 1 DTETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGAQIFSEGGLDY 59
Query: 148 LGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDP 206
LGNP+L+HAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLADDP
Sbjct: 60 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEITDPLYPGGS-FDPLGLADDP 117
Query: 207 VTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVP
Sbjct: 118 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 177
Query: 267 GS 268
G
Sbjct: 178 GK 179
>gi|93359558|gb|ABF13305.1| chloroplast chlorophyll a/b binding protein [Phaseolus vulgaris]
Length = 134
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/134 (96%), Positives = 131/134 (97%)
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEVLE
Sbjct: 1 PFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 60
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV GFRING
Sbjct: 61 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVVGFRING 120
Query: 181 LPGVGEGNDLYPGG 194
L GVGEGN+LYPGG
Sbjct: 121 LDGVGEGNNLYPGG 134
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 132/180 (73%), Positives = 150/180 (83%), Gaps = 4/180 (2%)
Query: 50 WYGPDRVKYLGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGP+S PSYLTGEFPGDYGWDTAGLSADPE F + R E+IH R+AML
Sbjct: 31 WYGPNRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARFAML 90
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GALGC+TPE+L K+ V F E VWF+AGAQIF EGGLDYLG+P L+HAQSI A++ QVV
Sbjct: 91 GALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAIVISQVV 150
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
LMGLVEG+R+NG P GEG D LYP G+ FDPLGLADDP TFAELK+KEIKNGRLAMFSM
Sbjct: 151 LMGLVEGYRVNGGP-AGEGLDSLYP-GESFDPLGLADDPDTFAELKIKEIKNGRLAMFSM 208
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/168 (79%), Positives = 145/168 (86%), Gaps = 4/168 (2%)
Query: 79 GWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQ 138
GWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAG+Q
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQ 59
Query: 139 IFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYF 197
IFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R+ G P +GEG D +YPGG F
Sbjct: 60 IFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGP-LGEGLDKVYPGGS-F 117
Query: 198 DPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
DPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL
Sbjct: 118 DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 165
>gi|914284|gb|AAB34068.1| light-harvesting complex b type 3, Lhcb3 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 132 aa]
Length = 132
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/132 (94%), Positives = 129/132 (97%)
Query: 137 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQY 196
AQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLPGVGEG DLYPGGQY
Sbjct: 1 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLPGVGEGGDLYPGGQY 60
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL+NPVANN
Sbjct: 61 FDPLGLADDPDTFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 120
Query: 257 AWVYATKFVPGS 268
AW YATKFVPG+
Sbjct: 121 AWEYATKFVPGA 132
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/170 (78%), Positives = 143/170 (84%), Gaps = 4/170 (2%)
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
VIH RWAMLGALGC PE+LEK V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSI
Sbjct: 1 VIHSRWAMLGALGCTFPEILEK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSI 59
Query: 160 LAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIK 218
LA+ QVVLMG VEG+RI G P +GEG D LYPGG FDPLGLADDP FAELKVKE+K
Sbjct: 60 LAIWATQVVLMGFVEGYRIGGGP-LGEGLDPLYPGGA-FDPLGLADDPDAFAELKVKELK 117
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
NGRLAMFSMFGFFVQAIVTGKGP++NL DHL +PVANNAW YAT FVPG
Sbjct: 118 NGRLAMFSMFGFFVQAIVTGKGPVQNLYDHLADPVANNAWAYATNFVPGQ 167
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/220 (60%), Positives = 158/220 (71%), Gaps = 9/220 (4%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP AR R EVIH RWAMLG
Sbjct: 391 WYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLG 450
Query: 110 ALGCITPEVLEKWLRVDFKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
ALG +TPE+L V F E VW+KAGAQIFS GL+YLGNP+L+HAQS++ +
Sbjct: 451 ALGVVTPELLAG-NGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 509
Query: 169 LMGLVEGFRINGLPGVG----EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
+MG VE +R G GVG E + LYPGG FDPLGLA+DP AELKVKE+KNGRLAM
Sbjct: 510 IMGAVEAYRYGG--GVGDFGRELDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAM 566
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
+M GF+VQ +VT GP+ENL HL +P ANN + + + F
Sbjct: 567 VAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGF 606
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/219 (54%), Positives = 144/219 (65%), Gaps = 3/219 (1%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFSA-QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRA 97
G A + WYGP+R K+LGP S P YL GE+ GDYG+DTAGL+ADP+ F R R
Sbjct: 144 GFAMFAATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRD 203
Query: 98 LEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQ 157
E+ +GRWAMLG LGC+ PEVL V + EPVWFK GA I + G +DYL NP L+HA
Sbjct: 204 AELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHAS 263
Query: 158 SILAVLGFQVVLMGLVEGFRINGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKE 216
++L L ++V E +R G +G+ D YPGG FDPLGL+ DP FAE KVKE
Sbjct: 264 NLLLTLVLELVFFFAAETWREAGEGPLGKAQDKSYPGG-VFDPLGLSKDPAAFAEAKVKE 322
Query: 217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVAN 255
+KNGRLAM +M G FVQA VTG+ PLENL HL NP N
Sbjct: 323 VKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 361
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/138 (57%), Positives = 99/138 (71%), Gaps = 7/138 (5%)
Query: 131 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG----E 186
VW+KAGAQIFS GL+YLGNP+L+HAQS++ + +MG VE +R G GVG E
Sbjct: 11 VWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGG--GVGDFGRE 68
Query: 187 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 246
+ LYPGG FDPLGLA+DP AELKVKE+KNGRLAM +M GF+VQ +VT GP+ENL
Sbjct: 69 LDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLT 127
Query: 247 DHLENPVANNAWVYATKF 264
HL +P ANN + + + F
Sbjct: 128 FHLADPSANNIFSFTSGF 145
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/220 (59%), Positives = 158/220 (71%), Gaps = 9/220 (4%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP AR R EVIH RWAMLG
Sbjct: 97 WYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLG 156
Query: 110 ALGCITPEVLEKWLRVDFKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
ALG +TPE+L V F E VW+KAGAQIFS GL+YLGNP+L+HAQS++ +
Sbjct: 157 ALGVVTPELLAG-NGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 215
Query: 169 LMGLVEGFRINGLPGVG----EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
+MG VE +R G GVG E + LYPGG FDPLGLA+DP AELKVKE+KNGRLAM
Sbjct: 216 IMGAVEAYRYGG--GVGDFGRELDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAM 272
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
+M GF+VQ +VT GP+ENL HL +P +NN + + + F
Sbjct: 273 VAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGF 312
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/220 (57%), Positives = 154/220 (70%), Gaps = 14/220 (6%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP AR R EVIH RWAML
Sbjct: 332 WYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML- 390
Query: 110 ALGCITPEVLEKWLRVDFKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
+TPE+L V F E VW+KAGAQIFS GL+YLGNP+L+HAQS++ +
Sbjct: 391 ----VTPELLAG-NGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 445
Query: 169 LMGLVEGFRINGLPGVG----EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
+MG VE +R G GVG E + LYPGG FDPLGLA+DP AELKVKE+KNGRLAM
Sbjct: 446 IMGAVEAYRYGG--GVGDFGRELDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAM 502
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
+M GF+VQ +VT GP+ENL HL +P +NN + + + F
Sbjct: 503 VAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGF 542
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 188 NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLD 247
+ LYPGG FDPLGLA+DP AELKVKE+KNGRLAM +M GF+VQ +VT GP+ENL
Sbjct: 2 DTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTF 60
Query: 248 HLENPVANNAWVYATKF 264
HL +P +NN + + + F
Sbjct: 61 HLADPSSNNIFSFTSGF 77
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/198 (68%), Positives = 149/198 (75%), Gaps = 5/198 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 36 WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 95
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVL
Sbjct: 96 ALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVL 154
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+R+ G P +GE D LYPGG FDPLGLADDP FAELKV E + +
Sbjct: 155 MGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPKAFAELKVNEDQEWQAGYVLDV 212
Query: 229 GFFVQAIVTG-KGPLENL 245
G +GPLE L
Sbjct: 213 RVLCSRDRDGPRGPLEEL 230
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/221 (59%), Positives = 158/221 (71%), Gaps = 9/221 (4%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP AR R EVIH RWAMLG
Sbjct: 45 WYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLG 104
Query: 110 ALGCITPEVLEKWLRVDFKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
ALG +TPE+L V F E VW+KAGAQIFS GL+YLGNP+L+HAQS++ +
Sbjct: 105 ALGVVTPELLAG-NGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 163
Query: 169 LMGLVEGFRINGLPGVG----EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
+MG VE +R G GVG E + LYPGG FDPLGLA+DP AELKVKE+KNGRLAM
Sbjct: 164 IMGAVEAYRYGG--GVGDFGRELDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAM 220
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFV 265
+M GF+VQ +VT GP+ENL HL +P +NN + + + F
Sbjct: 221 VAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 261
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 66/89 (74%), Gaps = 2/89 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP AR R EVIH RWAMLG
Sbjct: 280 WYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLG 339
Query: 110 ALGCITPEVLEKWLRVDFKE-PVWFKAGA 137
ALG +TPE+L V F E VW+KAGA
Sbjct: 340 ALGVVTPELLAG-NGVPFGEGAVWYKAGA 367
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 130/204 (63%), Positives = 154/204 (75%), Gaps = 10/204 (4%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL------WYGPDRVKYLGPFS 63
A+S+ ++ + GQ+ A +++D + K T ++ WYGPDRVKYLGPFS
Sbjct: 2 ATSTMAVSSPSLAGQAIKLAPSVQDTGRITMRKTTTKSKPVSSGSPWYGPDRVKYLGPFS 61
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 62 GESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-N 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI G P
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP- 179
Query: 184 VGEGND-LYPGGQYFDPLGLADDP 206
+GE D LYPGG FDPLGLADDP
Sbjct: 180 LGEVTDPLYPGGS-FDPLGLADDP 202
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/207 (63%), Positives = 153/207 (73%), Gaps = 12/207 (5%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDV------VPMGNAKYTMGNELWYGPDRVKYLGPFS 63
++++++ + F GQ+ + ++ V V M + +WYGPDR KYLGPFS
Sbjct: 2 ATSTIQQSAFAGQTLLKPQNELVRKVGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFS 61
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAK-N 120
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V F E VWFKAG+QIF EGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGP- 179
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTF 209
+GEG D LYPGG FDPLGLA+DP F
Sbjct: 180 LGEGLDQLYPGGA-FDPLGLAEDPEAF 205
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/181 (71%), Positives = 141/181 (77%), Gaps = 5/181 (2%)
Query: 83 AGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSE 142
AGLSADP+ FAR R +EVIH RWAMLGALGCITPE+L K + F E VWFKAGAQIF +
Sbjct: 1 AGLSADPQTFARYREIEVIHARWAMLGALGCITPELLAK-NGIPFGEAVWFKAGAQIFQD 59
Query: 143 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDL---YPGGQYFDP 199
GGL+YLGN +LVHAQSILA L QV+LMG E +R NG G G DL YPGG FDP
Sbjct: 60 GGLNYLGNESLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDLDSLYPGGA-FDP 118
Query: 200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWV 259
LGLADDP T AELKVKEIKNGRLAMFSMFGFFVQAIVTG+GP+ NL HL +P NNAW
Sbjct: 119 LGLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPTGNNAWN 178
Query: 260 Y 260
Y
Sbjct: 179 Y 179
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/157 (76%), Positives = 132/157 (84%), Gaps = 4/157 (2%)
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+TPE+L K V F E VWFKAGAQIF EGGLDYLGNP+LVHAQ+I+A L QV+L
Sbjct: 2614 ALGCLTPELLSKN-GVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 2672
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MGLVEG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSMF
Sbjct: 2673 MGLVEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 2730
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFV 265
GFFVQAIVTGKGP+ENL DHL NP NNA+ +ATKF
Sbjct: 2731 GFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFT 2767
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/163 (77%), Positives = 137/163 (84%), Gaps = 4/163 (2%)
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ Q
Sbjct: 1 MLGALGCVFPELLAK-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 59
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
VVLMGL+EG+R+ G P +GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMF
Sbjct: 60 VVLMGLIEGYRVGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMF 117
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
SMFGFFVQAIVTGKGP+ENL DHL +P ANNAW YAT FVPG
Sbjct: 118 SMFGFFVQAIVTGKGPIENLFDHLADPTANNAWAYATNFVPGK 160
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/179 (72%), Positives = 140/179 (78%), Gaps = 10/179 (5%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
+YGPDR K+LGPFS TPSYLTGEFPGDYGWDTAGLSADPE FAR R +EVIH RWAMLG
Sbjct: 32 FYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 91
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGCITPE++ D EPVWFKAGAQIFSEGGLDYLGNP+LVHAQSI+A L QV+L
Sbjct: 92 ALGCITPELIGG----DIAEPVWFKAGAQIFSEGGLDYLGNPSLVHAQSIIATLAVQVIL 147
Query: 170 MGLVEGFRING--LP-GVGEG-NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
MG E FR G +P G GE ++LYP G FDPL P TFAELKVKEIKNGRLA
Sbjct: 148 MGQAEAFRAAGYVVPGGFGEDLDNLYP-GDAFDPLAWL-IPDTFAELKVKEIKNGRLAC 204
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 150/216 (69%), Gaps = 2/216 (0%)
Query: 47 NELWYGPDRVKYL-GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 105
N WYGPDR K+L F A P YLTGE+PGDYGWD GLS+DPE FA R E++H RW
Sbjct: 122 NVEWYGPDRPKWLPDAFLAGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARW 181
Query: 106 AMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 165
AMLGALGCI PE+L V +EPVWFKAGA + ++ +DYLG+P LVHA SI+A+
Sbjct: 182 AMLGALGCIFPEILAMNYGVGLEEPVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAA 241
Query: 166 QVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
QV+LMG E +R +G+ GE D ++PGG YF+PL D AELKVKEIKNGRLAM
Sbjct: 242 QVLLMGGAEAYRASGVAPNGEEFDKMHPGGYYFNPLKFGKDEADLAELKVKEIKNGRLAM 301
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVY 260
FSM GF++QA TG GPL+NL+DH + N + Y
Sbjct: 302 FSMLGFYIQAATTGNGPLQNLVDHRADAANENIFKY 337
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/222 (58%), Positives = 140/222 (63%), Gaps = 59/222 (26%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWA
Sbjct: 10 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 69
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGC+ PE+L K V F E V ILA+ Q
Sbjct: 70 MLGALGCVFPEILSK-NGVKFGEAV--------------------------CILAIWACQ 102
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVLMG VEG+R+ ELKVKEIKNGRLAMFS
Sbjct: 103 VVLMGFVEGYRV--------------------------------ELKVKEIKNGRLAMFS 130
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
MFGFFVQAIVTGKGP+ENL+DHL +PVANNAW YAT FVPG
Sbjct: 131 MFGFFVQAIVTGKGPIENLVDHLADPVANNAWAYATNFVPGK 172
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 123/194 (63%), Positives = 147/194 (75%), Gaps = 1/194 (0%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
P+R +LGP++ TPSYL G GDYGWDT+GLS PEA RNR LE++H RWAMLGALG
Sbjct: 23 PERPLWLGPYTGATPSYLDGSLVGDYGWDTSGLSTTPEALLRNRELELLHARWAMLGALG 82
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
+ PE+L + EPVWFKAGAQIFS GGLDYLGNP+LVHAQSILA+LGFQV+LMGL
Sbjct: 83 SLLPELLATYAGTPLLEPVWFKAGAQIFSPGGLDYLGNPSLVHAQSILAILGFQVLLMGL 142
Query: 173 VEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
EG+R+ G P G+ LYPG FDPLG ++DP + EL+ KEIKNGRLAM +M G +
Sbjct: 143 SEGYRLAGGPLGEVGDALYPGAS-FDPLGFSEDPESLLELQTKEIKNGRLAMLAMLGMYT 201
Query: 233 QAIVTGKGPLENLL 246
QA+VTGKGP+ N L
Sbjct: 202 QALVTGKGPVSNWL 215
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/219 (59%), Positives = 141/219 (64%), Gaps = 54/219 (24%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 19 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 78
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKA A+ QV+L
Sbjct: 79 ALGCVFPELLSR-NGVKFGEAVWFKA-------------------------AIWACQVIL 112
Query: 170 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
MG VEG+RI G PLG +VKEIKNGRLAMFSMFG
Sbjct: 113 MGAVEGYRIGG-----------------GPLG-----------EVKEIKNGRLAMFSMFG 144
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 145 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 183
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/223 (61%), Positives = 155/223 (69%), Gaps = 15/223 (6%)
Query: 1 MASIMAAATAS-SSTSLRATP----FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDR 55
MAS MA ++ S + T+++ TP G R T G K WYGP+R
Sbjct: 13 MASTMALSSPSLAGTAVKLTPSSSVVSGDGRFTMRKTA-----GKPKTVSSGSPWYGPER 67
Query: 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
VKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+
Sbjct: 68 VKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 127
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG
Sbjct: 128 PELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAVEG 186
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVT-FAELKVKE 216
+R+ G P +GE D LYPGG FDPLGLA T FA V E
Sbjct: 187 YRVAGGP-LGEVVDPLYPGGS-FDPLGLARRSKTPFASSNVNE 227
>gi|225690798|gb|ACO06085.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 196
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/199 (62%), Positives = 144/199 (72%), Gaps = 14/199 (7%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALHQTTS-----FLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
L K + F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG +EG+R+
Sbjct: 116 LSK-NGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRV 174
Query: 179 NGLPGVGEGND-LYPGGQY 196
G P +GEG D +YPGG Y
Sbjct: 175 GGGP-LGEGLDIIYPGGAY 192
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/159 (78%), Positives = 133/159 (83%), Gaps = 4/159 (2%)
Query: 72 GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV 131
GEFPGDYGWDTAGLSADPE FA+NR EVIH RWAMLGALGC+ PE+L K V F E V
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAV 59
Query: 132 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-L 190
WFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G P +GEG D L
Sbjct: 60 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP-LGEGLDPL 118
Query: 191 YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
YPGG FDPLGLAD P FAELKVKE+KNGRLAMFSMFG
Sbjct: 119 YPGGA-FDPLGLADGPDQFAELKVKELKNGRLAMFSMFG 156
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/164 (76%), Positives = 136/164 (82%), Gaps = 4/164 (2%)
Query: 77 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAG 136
DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAG 59
Query: 137 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQ 195
+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G P +GE D LYPGG
Sbjct: 60 SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP-LGEVVDPLYPGGS 118
Query: 196 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
FDPLGLADDP FAELKVKEIKNGRLAM SMFGFFVQAIV K
Sbjct: 119 -FDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVLVK 161
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/257 (54%), Positives = 163/257 (63%), Gaps = 16/257 (6%)
Query: 5 MAAATASSSTSLRATPF----LGQSRTTANALKDVVPMGNAKYTMGN-ELWYGPDRVKYL 59
MAAAT + S+ A G+ R T G A+ T + WYGPDRV YL
Sbjct: 1 MAAATMALSSPALAGKIGRDVFGEGRITMRKTG-----GRARPTAASGSPWYGPDRVLYL 55
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG G I PE
Sbjct: 56 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGVAGFIIPEAC 115
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
K+ E VWFK GA + L+Y GN + ILAV+ +VVL+G E +RI
Sbjct: 116 NKFGANCGPEAVWFKTGALLLDGNTLNYFGNS--IPINLILAVIA-EVVLVGGAEYYRI- 171
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
+ G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFSM GFF+QA VTG+
Sbjct: 172 -INGLDLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGE 229
Query: 240 GPLENLLDHLENPVANN 256
GP+ENL HL +P NN
Sbjct: 230 GPVENLAKHLSDPFGNN 246
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/163 (74%), Positives = 135/163 (82%), Gaps = 4/163 (2%)
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGC PE+L K V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ Q
Sbjct: 1 MLGALGCTFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 59
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
VVLMG +EG+RI G P +GEG D LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMF
Sbjct: 60 VVLMGFIEGYRIGGGP-LGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMF 117
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
SMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 118 SMFGFFVQAIVTGKGPIENLFDHIADPVANNAWAYATNFVPGK 160
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/163 (75%), Positives = 134/163 (82%), Gaps = 4/163 (2%)
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSIL + Q
Sbjct: 1 MLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILVIWATQ 59
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
V+LMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMF
Sbjct: 60 VILMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMF 117
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
SMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 118 SMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 160
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/163 (75%), Positives = 136/163 (83%), Gaps = 4/163 (2%)
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ Q
Sbjct: 1 MLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 59
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
VVLMG VEG+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMF
Sbjct: 60 VVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMF 117
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
SMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG+
Sbjct: 118 SMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGN 160
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/185 (63%), Positives = 138/185 (74%), Gaps = 4/185 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDR K+LGP + Q P+YLTGE PGDYGWDTAGL ADP AR R EVIH RWAMLG
Sbjct: 152 WYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAMLG 211
Query: 110 ALGCITPEVLEKWLRVDFKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
ALG +TPE+L V F E VW+KAGAQIFS GL+YLGNP+L+HAQS++ +
Sbjct: 212 ALGVVTPELLAG-NGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 270
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
+MG VEG+R G +G+ D LYPGG FDPLGLA+DP FAELKVKE+KNGRLAM +M
Sbjct: 271 IMGAVEGYRYGGGWPLGDDLDRLYPGGP-FDPLGLANDPDAFAELKVKEVKNGRLAMVAM 329
Query: 228 FGFFV 232
GF+V
Sbjct: 330 LGFYV 334
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 122/157 (77%), Positives = 131/157 (83%), Gaps = 4/157 (2%)
Query: 77 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAG 136
DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCI PE+L + V F E VWFKAG
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLAR-NGVKFGEAVWFKAG 59
Query: 137 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQ 195
+QIFSEGGLDYLGNP L+HAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG
Sbjct: 60 SQIFSEGGLDYLGNPTLIHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS 118
Query: 196 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFV
Sbjct: 119 -FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 121/157 (77%), Positives = 132/157 (84%), Gaps = 4/157 (2%)
Query: 77 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAG 136
DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAG 59
Query: 137 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQ 195
+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG
Sbjct: 60 SQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS 118
Query: 196 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFV
Sbjct: 119 -FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 133/163 (81%), Gaps = 4/163 (2%)
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ Q
Sbjct: 1 MLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 59
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
VVLMG +EG+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMF
Sbjct: 60 VVLMGAIEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMF 117
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
SMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT P S
Sbjct: 118 SMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNLCPAS 160
>gi|190694831|gb|ACE88963.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 181
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/183 (65%), Positives = 134/183 (73%), Gaps = 9/183 (4%)
Query: 17 RATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYL 70
+ T FLG + ++ V + M + +WYGPDR KYLGPFS QTPSYL
Sbjct: 1 QTTSFLGTAPRRDELVRRVGDFGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYL 60
Query: 71 TGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEP 130
TGEF GDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K V F E
Sbjct: 61 TGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEA 119
Query: 131 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND- 189
VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+R+ G P +GEG D
Sbjct: 120 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGP-LGEGLDK 178
Query: 190 LYP 192
+YP
Sbjct: 179 VYP 181
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/165 (73%), Positives = 131/165 (79%), Gaps = 4/165 (2%)
Query: 105 WAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG 164
WAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+
Sbjct: 46 WAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 104
Query: 165 FQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 223
QVVLMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLA
Sbjct: 105 VQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLA 162
Query: 224 MFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
MFSMFGFFVQAIVTGKGP L +PV NNAW YAT FVPG
Sbjct: 163 MFSMFGFFVQAIVTGKGPPREPRRPLADPVNNNAWAYATNFVPGK 207
>gi|2570511|gb|AAB82141.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 304
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/256 (48%), Positives = 143/256 (55%), Gaps = 3/256 (1%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MAS + A T S TPFLG R + ++D+ + TM ELWYGPDRV YLG
Sbjct: 1 MASTIMAPT--SRVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSKELWYGPDRVNYLG 58
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE
Sbjct: 59 PFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 118
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
KW+RV FK+P + + P ++ +
Sbjct: 119 KWVRVHFKDPCGSRPAPKSSPTAASTTSATPTWCTPRASSPCWDSKSPHGSRPRLPHQRP 178
Query: 181 LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
+GE L P P+GL P ++V+ + L S F IVTGKG
Sbjct: 179 PRRLGEQRAL-PRRAVLRPVGLRGGPRNLCGVQVQGDQECPLRQCSPCWVFCPGIVTGKG 237
Query: 241 PLENLLDHLENPVANN 256
PLENLLDH +PVA
Sbjct: 238 PLENLLDHFADPVAKT 253
>gi|192764699|gb|ACF05893.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764701|gb|ACF05894.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764703|gb|ACF05895.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764707|gb|ACF05897.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764709|gb|ACF05898.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764711|gb|ACF05899.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764713|gb|ACF05900.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764715|gb|ACF05901.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764717|gb|ACF05902.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764719|gb|ACF05903.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764721|gb|ACF05904.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764723|gb|ACF05905.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764727|gb|ACF05907.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764729|gb|ACF05908.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764731|gb|ACF05909.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764733|gb|ACF05910.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764735|gb|ACF05911.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764737|gb|ACF05912.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764739|gb|ACF05913.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764741|gb|ACF05914.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764743|gb|ACF05915.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764745|gb|ACF05916.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 111
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/111 (97%), Positives = 110/111 (99%)
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
VIHGRWAMLGALGCITPEVLEKW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 60
Query: 160 LAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFA 210
LAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDP TFA
Sbjct: 61 LAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPATFA 111
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/159 (74%), Positives = 130/159 (81%), Gaps = 4/159 (2%)
Query: 111 LGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLM 170
LGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LM
Sbjct: 1 LGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLM 59
Query: 171 GLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
G VEG+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAM SMFG
Sbjct: 60 GAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMLSMFG 117
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 118 FFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 156
>gi|192764705|gb|ACF05896.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764725|gb|ACF05906.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 111
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/111 (96%), Positives = 109/111 (98%)
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
VIHGRWAMLGALGCITPEVLEKW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 60
Query: 160 LAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFA 210
LAVLGFQVVLMGLVEG RINGLPGVGEGNDLYPGGQYFDPLGLADDP TFA
Sbjct: 61 LAVLGFQVVLMGLVEGSRINGLPGVGEGNDLYPGGQYFDPLGLADDPATFA 111
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/145 (79%), Positives = 123/145 (84%), Gaps = 3/145 (2%)
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R+ G P +
Sbjct: 8 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGP-L 66
Query: 185 GEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
GEG D LYPG FDPLGLADDP AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 67 GEGLDPLYPG-DAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 125
Query: 244 NLLDHLENPVANNAWVYATKFVPGS 268
NL DHL +PVANNAW YAT FVPG
Sbjct: 126 NLYDHLADPVANNAWAYATNFVPGK 150
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/145 (78%), Positives = 122/145 (84%), Gaps = 3/145 (2%)
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G P +
Sbjct: 11 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-L 69
Query: 185 GEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
GE D +YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 70 GEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 128
Query: 244 NLLDHLENPVANNAWVYATKFVPGS 268
NL DHL +PV NNAW YAT FVPG
Sbjct: 129 NLADHLADPVNNNAWAYATNFVPGK 153
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/145 (79%), Positives = 122/145 (84%), Gaps = 3/145 (2%)
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G P +
Sbjct: 2 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP-L 60
Query: 185 GEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 61 GEVVDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 119
Query: 244 NLLDHLENPVANNAWVYATKFVPGS 268
NL DHL +PV NNAW YAT FVPG
Sbjct: 120 NLADHLADPVNNNAWAYATNFVPGK 144
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/258 (46%), Positives = 154/258 (59%), Gaps = 9/258 (3%)
Query: 8 ATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTP 67
A A+SS + + +++ A + V + +W+G DR K+LGP P
Sbjct: 58 AIANSSLGKQLQERMQETKAAAENSRSAVDAARMR-ARDASVWFGQDRPKWLGPIPYDYP 116
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127
+L G FPGDYG+D AGL DP F + E++H RWAML ALG + PEVLEK+ V F
Sbjct: 117 DHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVKF 176
Query: 128 KEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
E VW++ G LDYLG P ++V AQ IL + Q +LM E R G+ +
Sbjct: 177 AESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVIAICQFLLMVGPEYARYCGIEALE 236
Query: 186 ------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
G+ YPGG FDPLGL+ DP TF ELKVKEIKNGRLAM + GF+VQA+VT K
Sbjct: 237 PLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKK 296
Query: 240 GPLENLLDHLENPVANNA 257
GPLENLLDHL++P+ NNA
Sbjct: 297 GPLENLLDHLQDPLHNNA 314
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 155/258 (60%), Gaps = 9/258 (3%)
Query: 8 ATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTP 67
A A+SS + + +++ A + V + +W+G DR K+LGP P
Sbjct: 58 AIANSSLGKQLQERMQETKAAAENSRSAVDAARMR-ARDASVWFGQDRPKWLGPIPYDYP 116
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127
+L G FPGDYG+D AGL DP F + E++H RWAML ALG + PEVLEK+ V+F
Sbjct: 117 DHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVNF 176
Query: 128 KEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
E VW++ G LDYLG P ++V AQ I+ + Q +LM E R G+ +
Sbjct: 177 AESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIAICQFLLMVGPEYARYCGIEALE 236
Query: 186 ------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
G+ YPGG FDPLGL+ DP TF ELKVKEIKNGRLAM + GF+VQA+VT K
Sbjct: 237 PLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKK 296
Query: 240 GPLENLLDHLENPVANNA 257
GPLENLLDHL++P+ NNA
Sbjct: 297 GPLENLLDHLQDPLHNNA 314
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/154 (72%), Positives = 128/154 (83%), Gaps = 4/154 (2%)
Query: 114 ITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV 173
+TPE+L V F EPVWFKAGAQIF +GGL+YLGNP+L+HAQ+I+A L QV+LMGLV
Sbjct: 1 VTPELLAAN-GVSFGEPVWFKAGAQIFQDGGLNYLGNPSLIHAQNIVATLAVQVILMGLV 59
Query: 174 EGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
EG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFS FGFFV
Sbjct: 60 EGYRMNGGP-AGEGLDPLYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFV 117
Query: 233 QAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
QAIVTGKGP++NL DHL NP NNA+ +ATKF P
Sbjct: 118 QAIVTGKGPIQNLTDHLANPAENNAFAFATKFTP 151
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 117/158 (74%), Positives = 128/158 (81%), Gaps = 4/158 (2%)
Query: 112 GCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
G PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG
Sbjct: 1 GASFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 59
Query: 172 LVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 230
VEG+R+ G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGF
Sbjct: 60 AVEGYRVAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 117
Query: 231 FVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 118 FVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 155
>gi|60650129|dbj|BAD90930.1| chlorophyll a/b-binding protein [Adiantum capillus-veneris]
Length = 215
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/184 (59%), Positives = 134/184 (72%), Gaps = 2/184 (1%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
++S++A ++S + + P SR + V M K + GN + YG DR+ YLG
Sbjct: 8 LSSVVAFLSSSVFSGQQLKPVNELSRKVGTSEARVQMMAPKKSSSGN-IRYGADRLLYLG 66
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+TPE+L
Sbjct: 67 PFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLA 126
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
K V F E VWFKAG+QIF++GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+
Sbjct: 127 K-NGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAV 185
Query: 181 LPGV 184
+P V
Sbjct: 186 VPLV 189
>gi|116788195|gb|ABK24790.1| unknown [Picea sitchensis]
Length = 151
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/133 (76%), Positives = 113/133 (84%), Gaps = 1/133 (0%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 18 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 77
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+PNLVHAQSILA+ QV+L
Sbjct: 78 ALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQVIL 136
Query: 170 MGLVEGFRINGLP 182
MG +EG+R+ G P
Sbjct: 137 MGAIEGYRVAGGP 149
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/173 (63%), Positives = 128/173 (73%), Gaps = 4/173 (2%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDR K+LGP + Q P+YLTGE PGDYGWDTAGL ADP AR R EVIH RWAMLG
Sbjct: 152 WYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAMLG 211
Query: 110 ALGCITPEVLEKWLRVDFKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
ALG +TPE+L V F E VW+KAGAQIFS GL+YLGNP+L+HAQS++ +
Sbjct: 212 ALGVVTPELLAG-NGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 270
Query: 169 LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNG 220
+MG VEG+R G +G+ D LYPGG FDPLGLA+DP FAELKVKE+KNG
Sbjct: 271 IMGAVEGYRYGGGWPLGDDLDRLYPGGP-FDPLGLANDPDAFAELKVKEVKNG 322
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/204 (54%), Positives = 140/204 (68%), Gaps = 7/204 (3%)
Query: 50 WYGPDRVKYLGPFSA--QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAM 107
+YGP+R + GPF++ P YL GE+PGDYG D L PE +A+ R+ E+++GRWAM
Sbjct: 13 YYGPNRPLWKGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAKLRSQELMNGRWAM 72
Query: 108 LGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV 167
LG GC+ PE++ F EPVWFK GAQIFSE G+DYLG P ++A S++AV+ Q
Sbjct: 73 LGITGCLVPELINSNPTPGF-EPVWFKTGAQIFSEAGIDYLGVPGFINAHSLVAVIVVQA 131
Query: 168 VLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
+LMG+ E RI P EGND YPGG+ FDPLG + DP +FAELKVKEIKNGRLAM +
Sbjct: 132 LLMGVAEYARIKLSP---EGNDAFYPGGKAFDPLGFSSDPESFAELKVKEIKNGRLAMMA 188
Query: 227 MFGFFVQAIVTGKGPLENLLDHLE 250
M G F Q VTG PL+NL D L+
Sbjct: 189 MAGLFAQGAVTGVSPLQNLHDFLK 212
>gi|47026947|gb|AAT08694.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 211
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/178 (60%), Positives = 126/178 (70%), Gaps = 2/178 (1%)
Query: 1 MASIMAAATAS-SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYL 59
MAS MA ++ S + T+++ TP + K WYGPDRVKYL
Sbjct: 1 MASTMALSSPSLAGTAVKLTPSSSSGVSGDGRFTMRKTAAKPKTVSSGSPWYGPDRVKYL 60
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
+ V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG G++
Sbjct: 121 AR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGGRRGYK 177
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 141/224 (62%), Gaps = 8/224 (3%)
Query: 41 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEV 100
A+ WYG +R ++LGP S Q P+YL+GE PGDYG+D AGL+ DP AF R E+
Sbjct: 107 AQKARKESFWYGEERPRWLGPISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEI 166
Query: 101 IHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA--QS 158
+H RWAML ALG + PEVL+ F EPVW++ G LDYLG P L A Q
Sbjct: 167 LHARWAMLAALGALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQG 226
Query: 159 ILAVLGFQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAEL 212
+L + Q +LM E R G+ + G+ YPGG FDPL L+ DPV+F EL
Sbjct: 227 VLVIAFCQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGILFDPLNLSKDPVSFEEL 286
Query: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
KVKEIKNGRLAM + GF++QA +TGKGP+ENL++H+ +P+ NN
Sbjct: 287 KVKEIKNGRLAMVAWLGFYIQAALTGKGPVENLVEHISDPLHNN 330
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/135 (79%), Positives = 116/135 (85%), Gaps = 3/135 (2%)
Query: 131 VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND- 189
VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R+ G P +GEG D
Sbjct: 2 VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGP-LGEGLDP 60
Query: 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
LYPGG FDPLGLADDP FAELKVKEIKNGRLAM SMFGFFVQAIVTGKGP+ENL DHL
Sbjct: 61 LYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVTGKGPIENLYDHL 119
Query: 250 ENPVANNAWVYATKF 264
+P NNAW YAT F
Sbjct: 120 ADPSTNNAWAYATNF 134
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 139/218 (63%), Gaps = 8/218 (3%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
N WYG DR ++LGP P YLTGE+PGDYG+D AGL DP AFA E++H RWA
Sbjct: 92 NSFWYGGDRPRWLGPVPYDYPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 151
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 164
ML ALG + PE+L+ + V F EPVW+K G LDYLG P + Q ++ +
Sbjct: 152 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAI 211
Query: 165 FQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
Q +LM E R G+ + G+ YPGG FDPLGL+ DPV F +LKVKEIK
Sbjct: 212 CQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKEIK 271
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
NGRLAM + FGF++QA VTGKGP++NL++HL +P+ NN
Sbjct: 272 NGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNN 309
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 139/215 (64%), Gaps = 8/215 (3%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG +R ++LGP + P++LTGE+PGDYG+D AGL DP AFA E++H RWAML
Sbjct: 101 WYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLA 160
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQV 167
ALG + PE+L+ + V F EPVW+K G LDYLG P + Q ++ + Q
Sbjct: 161 ALGVVVPELLDLFEVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQA 220
Query: 168 VLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
+LM E R G+ + G+ YPGG FDPLGL+ DPV F +LKVKEIKNGR
Sbjct: 221 LLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGR 280
Query: 222 LAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LAM + GF++QA VTGKGP++NL++HL +P+ NN
Sbjct: 281 LAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 315
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 138/218 (63%), Gaps = 8/218 (3%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
N WYG DR ++LGP P +LTGE+PGDYG+D AGL DP AFA E++H RWA
Sbjct: 91 NSFWYGGDRPRWLGPVPYDYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWA 150
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 164
ML ALG + PE+L+ + V F EPVW+K G LDYLG P + Q ++ +
Sbjct: 151 MLAALGVVIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAI 210
Query: 165 FQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
Q +LM E R G+ + G+ YPGG FDPLGL+ DPV F +LKVKEIK
Sbjct: 211 CQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIK 270
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
NGRLAM + GF++QA VTGKGP++NL++HL +P+ NN
Sbjct: 271 NGRLAMVAWLGFYIQAAVTGKGPVQNLVEHLSDPLHNN 308
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 109/204 (53%), Positives = 134/204 (65%), Gaps = 7/204 (3%)
Query: 50 WYGPDRVKYLGPFSA--QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAM 107
+YGP+R + GPF+ P YL GE+PGDYG D L+ P +AR R E+++GRWAM
Sbjct: 25 YYGPNRPLWKGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYARLRTQELMNGRWAM 84
Query: 108 LGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV 167
LG GC+TPE++ F EPVWF GAQIFS+ G+DYLG P ++A S+ AV+ Q
Sbjct: 85 LGITGCLTPELINSNSTPGF-EPVWFNTGAQIFSDAGIDYLGVPGFINAHSLFAVIVVQA 143
Query: 168 VLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
+LMGL E RI +P EG D YPGG+ FDPLG + DP AELKVKEIKNGRLAM +
Sbjct: 144 LLMGLAEYARIKFVP---EGADPFYPGGKTFDPLGFSSDPEILAELKVKEIKNGRLAMMA 200
Query: 227 MFGFFVQAIVTGKGPLENLLDHLE 250
M G F Q VTG PL+NL D L
Sbjct: 201 MAGLFAQGAVTGVSPLQNLHDWLH 224
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 139/215 (64%), Gaps = 8/215 (3%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG +R ++LGP + P++LTGE+PGDYG+D AGL DP AFA E++H RWAML
Sbjct: 101 WYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLA 160
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQV 167
ALG + PE+L+ + V F EPVW+K G LDYLG P + Q ++ + Q
Sbjct: 161 ALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQA 220
Query: 168 VLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
+LM E R G+ + G+ YPGG FDPLGL+ DPV F +LKVKEIKNGR
Sbjct: 221 LLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGR 280
Query: 222 LAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LAM + GF++QA VTGKGP++NL++HL +P+ NN
Sbjct: 281 LAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 315
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 140/235 (59%), Gaps = 12/235 (5%)
Query: 39 GNAKYTMGN----ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAR 94
G A+ N +WY R K+LGP P +L GE PGDYG+D GLS DP AF R
Sbjct: 111 GEAREAQSNVRDESMWYREGRPKWLGPIPYDYPDHLQGEAPGDYGFDILGLSRDPTAFER 170
Query: 95 NRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--N 152
E++H RWAML ALG + PE+L+++ V F EPVW+K G LDYLG P +
Sbjct: 171 YFNFEILHARWAMLAALGVVIPELLDRFGGVQFSEPVWWKVGYAKLQGDTLDYLGIPGLH 230
Query: 153 LVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDP 206
+ AQ IL + QV+LM E R G+ + G+ YPGG FDPLGL D
Sbjct: 231 IAGAQGILVIAFCQVILMLGPEYARYCGIEALEPLGIFLPGDVNYPGGALFDPLGLTKDA 290
Query: 207 VTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYA 261
F +LKVKE+KNGRLAM + GF+VQA+VT KGP++NL D LE+P+ N + YA
Sbjct: 291 AAFEDLKVKEMKNGRLAMVAWLGFYVQALVTQKGPIDNLFDFLEDPLHQNLFAYA 345
>gi|225690800|gb|ACO06086.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 215
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 135/209 (64%), Gaps = 15/209 (7%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALHQTTS-----FLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 115
Query: 119 LEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVL-GFQVVLMGLVEGFR 177
L K + F E VWFKAG QIF EGGLDYLG+PNLVHAQS L +L G
Sbjct: 116 LCK-NGLKFGEAVWFKAGPQIFFEGGLDYLGHPNLVHAQSFLPILGGASGAHEASSRATV 174
Query: 178 INGLPGVGEGNDLYPGGQYFDPLGLADDP 206
+ P +G + +YPGG + PLGL+ DP
Sbjct: 175 LVAAPLLGP-DIIYPGGALY-PLGLSADP 201
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 134/216 (62%), Gaps = 8/216 (3%)
Query: 49 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYG R ++LGP P +L GEFPGDYG+D AGL DP AFA E++H RWAML
Sbjct: 89 FWYGGARPRWLGPLRYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAML 148
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQ 166
ALG + PE+L+ + V F EPVW+K G LDYLG P + Q I+ + Q
Sbjct: 149 AALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVIAICQ 208
Query: 167 VVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNG 220
V+LM E R G+ + G+ YPGG FDPLGL+ DPV F E KVKEIKNG
Sbjct: 209 VLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEEFKVKEIKNG 268
Query: 221 RLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
RLAM + GF++QA VTGKGP++NL +HL +P+ NN
Sbjct: 269 RLAMVAWIGFYIQAAVTGKGPVQNLAEHLSDPLHNN 304
>gi|914283|gb|AAB34067.1| light-harvesting complex b type 2, Lhcb2 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 130 aa]
Length = 130
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/132 (78%), Positives = 111/132 (84%), Gaps = 2/132 (1%)
Query: 137 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQY 196
+QIFSEGGLDYLGNPNLVHAQSILA+ QVVLMG VEG+RI G P G + LYPGG
Sbjct: 1 SQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRIAGDPSGGL-DPLYPGGA- 58
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NN
Sbjct: 59 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVNNN 118
Query: 257 AWVYATKFVPGS 268
AW +AT FVPG
Sbjct: 119 AWAFATNFVPGK 130
>gi|116785674|gb|ABK23816.1| unknown [Picea sitchensis]
Length = 166
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/158 (65%), Positives = 112/158 (70%), Gaps = 11/158 (6%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A S+SL L R N L V A+ TM +WYGPDR K
Sbjct: 1 MATASAIQSSSLAGQTLL---RPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+H
Sbjct: 118 LLAK-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 154
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 134/218 (61%), Gaps = 8/218 (3%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYG DR ++LGP S + PSYLTGE PGDYG+D AGL DP A + E++H RWA
Sbjct: 102 ESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWA 161
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA--QSILAVLG 164
ML ++G + PE+L+ F EPVW++ G LDYLG L A Q ++ +
Sbjct: 162 MLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAI 221
Query: 165 FQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
Q +LM E R G+ + G+ YPGG FDPL L++DP F ELKVKEIK
Sbjct: 222 CQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIK 281
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
NGRLAM + GF+VQA +TGKGP++NL+DH+ +P NN
Sbjct: 282 NGRLAMVAWLGFYVQAALTGKGPVQNLIDHISDPFHNN 319
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 143/226 (63%), Gaps = 11/226 (4%)
Query: 36 VPMGNAKYTMGNEL--WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPE 90
VP+ ++ + +EL WYGPDR YL ++ P YLTGE PGDYG+D GL PE
Sbjct: 48 VPVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPE 107
Query: 91 AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGN 150
FA+ +A E+IH RWAMLGA G + PE K+ E VWFK GA + L+Y GN
Sbjct: 108 DFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGN 167
Query: 151 PNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFA 210
+ ++AV+ +VVL+G E +RI + G+ + L+PGG FDPLGLA DP A
Sbjct: 168 S--IPINLVVAVIA-EVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAA 221
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LKVKEIKNGRLAMFSM FF+QA VTG+GP+ENL HL +P NN
Sbjct: 222 ILKVKEIKNGRLAMFSMLAFFIQAYVTGEGPVENLAKHLSDPFGNN 267
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 133/215 (61%), Gaps = 8/215 (3%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG +R ++LGP P YLTGE PGDYG+D AGLS DP AF + E++H RWAML
Sbjct: 113 WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLA 172
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQV 167
+LG + PE+L+ + F EP+W++ G LDYLG P +L +Q ++ + Q
Sbjct: 173 SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 232
Query: 168 VLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
+LM E R G+ + G+ YPGG FDPL L+ D F ELKVKEIKNGR
Sbjct: 233 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGR 292
Query: 222 LAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LAM + GF+ QA +TGKGP++NLLDH+ +P NN
Sbjct: 293 LAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 327
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 136/210 (64%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YLTGE PGDYG+D GLS PE FA+ +A E+IH RWA
Sbjct: 69 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 128
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L+Y G P + ILAV+ +
Sbjct: 129 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLILAVVA-E 185
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
+VL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 186 IVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFA 242
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GF+ QA VTG+GP+ENL HL +P NN
Sbjct: 243 MLGFYFQAYVTGEGPVENLAKHLSDPFGNN 272
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 136/210 (64%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YLTGE PGDYG+D GLS PE FA+ +A E+IH RWA
Sbjct: 69 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 128
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L+Y G P + ILAV+ +
Sbjct: 129 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINFILAVVA-E 185
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
+VL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 186 IVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFA 242
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GF+ QA VTG+GP+ENL HL +P NN
Sbjct: 243 MLGFYFQAYVTGEGPVENLAKHLSDPFGNN 272
>gi|169199|gb|AAA33703.1| Major Cab protein [Petunia x hybrida]
Length = 136
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 105/138 (76%), Positives = 112/138 (81%), Gaps = 3/138 (2%)
Query: 132 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-L 190
W A +QIFSEG LDYLGNP+L+HAQSILAV QVVLMG VEG+R+ G P +GE D L
Sbjct: 1 WIPAVSQIFSEGELDYLGNPSLIHAQSILAVWACQVVLMGAVEGYRVAGGP-LGEVIDPL 59
Query: 191 YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLE 250
PGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP ENL DHL
Sbjct: 60 CPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFENLADHLA 118
Query: 251 NPVANNAWVYATKFVPGS 268
+PV NNAW YAT FVPG
Sbjct: 119 DPVNNNAWSYATNFVPGK 136
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 134/210 (63%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR YL ++ P YLTGE PGDYG+D GL PE FA+ +A E+IH RWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G + PE K+ E VWFK GA + L+Y GN + ++AV+ +
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNS--IPINLVVAVIA-E 181
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 182 VVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAMFS 238
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
MF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 239 MFAFFIQAYVTGEGPVENLAKHLSDPFGNN 268
>gi|117661756|gb|ABK55666.1| chloroplast chlorophyll a/b-binding protein [Cucumis sativus]
Length = 137
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 104/140 (74%), Positives = 114/140 (81%), Gaps = 4/140 (2%)
Query: 75 PGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFK 134
PGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFK
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFK 59
Query: 135 AGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGN-DLYPG 193
AG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+RI G P +GE +YPG
Sbjct: 60 AGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTVPIYPG 118
Query: 194 GQYFDPLGLADDPVTFAELK 213
G FDPLGLADDP FAELK
Sbjct: 119 GS-FDPLGLADDPEAFAELK 137
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 134/210 (63%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR YL ++ P YLTGE PGDYG+D GL PE FA+ +A E+IH RWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G + PE K+ E VWFK GA + L+Y GN + ++AV+ +
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNS--IPINLVVAVIA-E 181
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
V+L+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 182 VILVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAMFS 238
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
MF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 239 MFAFFIQAYVTGEGPVENLAKHLSDPFGNN 268
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 134/210 (63%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR YL ++ P YLTGE PGDYG+D GL PE FA+ +A E+IH RWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G + PE K+ E VWFK GA + L Y GN + ++AV+ +
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNS--IPINLVVAVIA-E 181
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 182 VVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAMFS 238
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
MF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 239 MFAFFIQAYVTGEGPVENLAKHLSDPFGNN 268
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 138/210 (65%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YLTGE PGDYG+D +GLS PE F++ +A E+IH RWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWA 130
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L+Y G P + I+AV+ +
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVIA-E 187
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
+VL+G E +RI + G+ + L+PGG FDPLGLA+DP A LKVKEIKNGRLAMF+
Sbjct: 188 IVLVGGAEYYRI--INGLNFEDKLHPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAMFA 244
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GF+ QA VTG+GP+ENL HL +P NN
Sbjct: 245 MLGFYFQAYVTGEGPVENLAKHLSDPFGNN 274
>gi|1165248|gb|AAA85589.1| chlorophyll a/b binding protein of PS II, partial [Picea abies]
Length = 131
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/132 (76%), Positives = 111/132 (84%), Gaps = 3/132 (2%)
Query: 138 QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQY 196
QIFSEGGLDYLG+PNLVHAQSILA+ QV+LMG +EG+R+ G P +GE D +YPGG
Sbjct: 2 QIFSEGGLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPIYPGGN- 59
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPL NL DHL +PV NN
Sbjct: 60 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLXNLADHLADPVNNN 119
Query: 257 AWVYATKFVPGS 268
AW YAT FVPG
Sbjct: 120 AWAYATNFVPGK 131
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 136/210 (64%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YLTGE PGDYG+D GLS PE FA+ +A E+IH RWA
Sbjct: 70 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 129
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L+Y G P + I+AV+ +
Sbjct: 130 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVVA-E 186
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
+VL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 187 IVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFA 243
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GF+ QA VTG+GP+ENL HL +P NN
Sbjct: 244 MLGFYFQAYVTGEGPVENLAKHLSDPFGNN 273
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 137/210 (65%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YLTGE PGDYG+D GLS PE FA+ +A E+IH RWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 132
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L+Y G P + I+AV+ +
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVIA-E 189
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
+VL+G E +RI + G+ + L+PGG FDPLGLA+DP A LKVKEIKNGRLAMF+
Sbjct: 190 IVLVGGAEYYRI--INGLNFEDKLHPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAMFA 246
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GF+ QA VTG+GP+ENL HL +P NN
Sbjct: 247 MLGFYFQAYVTGEGPVENLAKHLSDPFGNN 276
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 133/215 (61%), Gaps = 8/215 (3%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG +R ++LGP P YLTGE PGDYG+D AGLS DP AF + E++H RWAML
Sbjct: 113 WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLA 172
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQV 167
+LG + PE+L+ + F EP+W++ G LDYLG P +L +Q ++ + Q
Sbjct: 173 SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 232
Query: 168 VLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
+LM E R G+ + G+ YPGG FDPL L+ D F ELKVKEIKNGR
Sbjct: 233 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGR 292
Query: 222 LAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LAM + GF+ QA +TGKGP++NLL+H+ +P NN
Sbjct: 293 LAMVAWLGFYSQAALTGKGPVQNLLNHIADPFHNN 327
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 135/216 (62%), Gaps = 8/216 (3%)
Query: 49 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
W+G R ++LGP P +L GEFPGDYG+D AGL DP AFA E++H RWAML
Sbjct: 97 FWFGEARPRWLGPIPYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAML 156
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA--QSILAVLGFQ 166
ALG + PE+L+ + V F EPVW+K G LDYLG L A Q ++ + Q
Sbjct: 157 AALGVVIPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAICQ 216
Query: 167 VVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNG 220
+LM E R G+ + G+ YPGG FDPLGL+ DPV F ELKVKEIKNG
Sbjct: 217 ALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIKNG 276
Query: 221 RLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
RLAM + GF++QA VTGKGP++NL++HL +P+ NN
Sbjct: 277 RLAMVAWLGFYLQAAVTGKGPVQNLVEHLSDPLHNN 312
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/262 (41%), Positives = 147/262 (56%), Gaps = 11/262 (4%)
Query: 3 SIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
++ A A +S SLR + N+ + A+ + WYG +R ++ GP
Sbjct: 65 AVKAIANSSLGESLRRRLEEKKKEAVENSSRF---KAKAQEARNDSKWYGKERPRWFGPI 121
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
P YLTGE PGDYG+D AGL D F + E++H RWAML ALG + PEVL+
Sbjct: 122 PYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLT 181
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA--QSILAVLGFQVVLMGLVEGFRING 180
F EPVW++ G LDYLG P L A Q ++ + QV+LM E R G
Sbjct: 182 GAFHFAEPVWWRVGYSKLQGETLDYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCG 241
Query: 181 LPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+ + G+ YPGG FDPL L++DPV F +LKVKEIKNGRLAM + GF+ QA
Sbjct: 242 IEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQA 301
Query: 235 IVTGKGPLENLLDHLENPVANN 256
TGKGP++NL+DH+ +P+ NN
Sbjct: 302 AFTGKGPVQNLVDHVSDPLHNN 323
>gi|169201|gb|AAA33704.1| Major Cab protein [Petunia x hybrida]
Length = 129
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/131 (79%), Positives = 110/131 (83%), Gaps = 3/131 (2%)
Query: 137 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQ 195
+QIFSEG LDYLGNP+LVHAQSILA QVVLMG VEG+R+ G P +GE D LYPGG
Sbjct: 1 SQIFSEGELDYLGNPSLVHAQSILASWACQVVLMGAVEGYRVAGGP-LGEVIDPLYPGGS 59
Query: 196 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVAN 255
FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV N
Sbjct: 60 -FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 118
Query: 256 NAWVYATKFVP 266
NAW YAT FVP
Sbjct: 119 NAWSYATNFVP 129
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 136/210 (64%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YLTGE PGDYG+D GLS PE FA+ +A E+IH RWA
Sbjct: 74 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 133
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L+Y GN + ++AV+ +
Sbjct: 134 MLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNS--IPINLVVAVIA-E 190
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 191 VVLLGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQAAILKVKEIKNGRLAMFA 247
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GF+ QA VTG+GP+ENL HL +P NN
Sbjct: 248 MLGFYFQAYVTGEGPVENLAKHLSDPFGNN 277
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 137/210 (65%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YLTGE PGDYG+D GLS PE F++ +A E+IH RWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 130
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L+Y G P + I+AV+ +
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVIA-E 187
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
+VL+G E +RI + G+ + L+PGG FDPLGLA+DP A LKVKEIKNGRLAMF+
Sbjct: 188 IVLVGGAEYYRI--INGLNFEDKLHPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAMFA 244
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GF+ QA VTG+GP+ENL HL +P NN
Sbjct: 245 MLGFYFQAYVTGEGPVENLAKHLSDPFGNN 274
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 131/210 (62%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L A P YL GE PGDYG+D GLS PE F + +A E+IH RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L Y G +H I AV+ +
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGAS--IHINLIAAVVA-E 201
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
V+L+G E +R G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMFS
Sbjct: 202 VILVGGAEYYRATN--GLDFEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFS 258
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFFVQA VTG+GP+ENL HL +P NN
Sbjct: 259 MLGFFVQAYVTGEGPVENLAAHLSDPFGNN 288
>gi|397789260|gb|AFO67219.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 155
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 115/157 (73%), Gaps = 11/157 (7%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM--------GNELWYGPDRVKYLGP 61
A+S+ +L + G++ A + ++ GN + +M WYGPDRVKYLGP
Sbjct: 2 AASTMALSSPSLAGKAVKVAPSSSEL--FGNGRISMRKTAKPVSSGSPWYGPDRVKYLGP 59
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
FS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 60 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 119
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQS
Sbjct: 120 -NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQS 155
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 132/210 (62%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YL GE GDYG+D GL PE FA+ +A E+IH RWA
Sbjct: 65 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 124
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA GCI PE L K+ E VWFK GA + L Y G + +LAV+G +
Sbjct: 125 MLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKN--IPINLVLAVVG-E 181
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI G+ + L+PGG FDPL LA DP A LKVKEIKNGRLAMFS
Sbjct: 182 VVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLDLAKDPEQGALLKVKEIKNGRLAMFS 238
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
MF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 239 MFAFFIQAYVTGEGPVENLSKHLSDPFGNN 268
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 109/126 (86%), Gaps = 3/126 (2%)
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
+ F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMGL+EG+R+ G P +
Sbjct: 1 IKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGP-L 59
Query: 185 GEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
GEG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 60 GEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 118
Query: 244 NLLDHL 249
NL DH
Sbjct: 119 NLYDHF 124
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/262 (41%), Positives = 146/262 (55%), Gaps = 11/262 (4%)
Query: 3 SIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPF 62
++ A A +S SLR + N+ + A+ + WYG +R ++ GP
Sbjct: 62 AVKAIANSSIGVSLRRRLEEKKKEAVENSSRF---KSKAQEARNDSKWYGKERPRWFGPI 118
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
P YLTGE PGDYG+D AGL D F + E++H RWAML ALG + PEV +
Sbjct: 119 PYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLT 178
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA--QSILAVLGFQVVLMGLVEGFRING 180
F EPVW++ G L+YLG P L A Q ++ + QV+LM E R G
Sbjct: 179 GTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCG 238
Query: 181 LPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+ + G+ YPGG FDPL L++DPV F +LKVKEIKNGRLAM + GF+ QA
Sbjct: 239 IEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQA 298
Query: 235 IVTGKGPLENLLDHLENPVANN 256
TGKGP++NL+DH+ +P+ NN
Sbjct: 299 AFTGKGPVQNLVDHVSDPLHNN 320
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 136/210 (64%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P+YLTGE PGDYG+D GLS PE FA+ +A E+IH RWA
Sbjct: 72 WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 131
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + L+Y G + I AV+ +
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLIFAVVA-E 188
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI + G+ + L+PGG FDPLGLA+DP A LKVKEIKNGRLAMF+
Sbjct: 189 VVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAMFA 245
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 246 MLGFFIQAYVTGEGPVENLAAHLSDPFGNN 275
>gi|305377032|dbj|BAJ15879.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 129
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 107/127 (84%), Gaps = 3/127 (2%)
Query: 143 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLG 201
GGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG FDPLG
Sbjct: 5 GGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLG 62
Query: 202 LADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYA 261
LADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YA
Sbjct: 63 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYA 122
Query: 262 TKFVPGS 268
T FVPG
Sbjct: 123 TNFVPGK 129
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 133/210 (63%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F + +A E+IH RWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + L+Y G + +LAV+ +
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-E 188
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
V+L+G E FRI G+G + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 189 VILVGGAEYFRITN--GLGFDDKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFA 245
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF QA VTG+GP+ENL HL +P NN
Sbjct: 246 MLGFFFQAYVTGEGPVENLAKHLSDPFGNN 275
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 134/210 (63%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YL GE PGDYG+D GLS PE F + +A E+IH RWA
Sbjct: 70 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWA 129
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + L+Y GN + I+AV+ +
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLIVAVIA-E 186
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI + G+ + L+PGG FDPLGLADDP A LKVKEIKNGRLAMF+
Sbjct: 187 VVLVGGAEYYRI--INGLNFEDKLHPGGP-FDPLGLADDPDQAAILKVKEIKNGRLAMFA 243
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GF+ QA VTG+GP+ENL HL +P NN
Sbjct: 244 MLGFYFQAYVTGEGPVENLAKHLSDPFGNN 273
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 131/210 (62%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L A P YL GE PGDYG+D GLS PE F + +A E+IH RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L Y G ++ ++A + +
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVVAE 201
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
V+L+G E +R G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMFS
Sbjct: 202 VILVGGAEYYRATN--GLDFEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFS 258
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFFVQA VTG+GP+ENL HL +P NN
Sbjct: 259 MLGFFVQAYVTGEGPVENLAAHLSDPFGNN 288
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 131/210 (62%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L A P YL GE PGDYG+D GLS PE F + +A E+IH RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L Y G ++ ++A + +
Sbjct: 145 MLGAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVVAE 201
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
V+L+G E +R G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMFS
Sbjct: 202 VILVGGAEYYRATN--GLDFEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFS 258
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFFVQA VTG+GP+ENL HL +P NN
Sbjct: 259 MLGFFVQAYVTGEGPVENLAAHLSDPFGNN 288
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 131/205 (63%), Gaps = 8/205 (3%)
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GP + P++LTGE+PGDYG+D AGL DP AFA E++H RWAML ALG + PE+L
Sbjct: 35 GPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELL 94
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFR 177
+ + V F EPVW+K G LDYLG P + Q ++ + Q +LM E R
Sbjct: 95 DLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYAR 154
Query: 178 INGLPGVGE------GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 231
G+ + G+ YPGG FDPLGL+ DPV F +LKVKEIKNGRLAM + GF+
Sbjct: 155 YCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFY 214
Query: 232 VQAIVTGKGPLENLLDHLENPVANN 256
+QA VTGKGP++NL++HL +P+ NN
Sbjct: 215 IQAAVTGKGPIQNLVEHLSDPLHNN 239
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 131/210 (62%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L A P YL GE PGDYG+D GLS PE F + +A E+IH RWA
Sbjct: 60 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 119
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L Y G ++ ++A + +
Sbjct: 120 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVVAE 176
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
V+L+G E +R G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMFS
Sbjct: 177 VILVGGAEYYRATN--GLDFEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFS 233
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFFVQA VTG+GP+ENL HL +P NN
Sbjct: 234 MLGFFVQAYVTGEGPVENLAAHLSDPFGNN 263
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/213 (51%), Positives = 136/213 (63%), Gaps = 11/213 (5%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR YL + P+YLTGE PGDYG+D GLS PE F R +A E+IH RWA
Sbjct: 48 WYGPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWA 107
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH-AQSILAVLGF 165
MLGA G + PE K+ V E VW+K GA + + Y G ++ A +++A
Sbjct: 108 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPINLAAAVIA---- 163
Query: 166 QVVLMGLVEGFRING--LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 223
+V+L+G E +R + G+ + + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 164 EVILVGGAEYYRSTNKDVYGLQDLDRLHPGGA-FDPLGLAKDPDQFALLKVKEIKNGRLA 222
Query: 224 MFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
MFSM GFFVQA VTG+GP+ENL HL +P NN
Sbjct: 223 MFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNN 255
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 138/223 (61%), Gaps = 12/223 (5%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YL GE PGDYG+D GLS PE FA+ +A E+IH RWA
Sbjct: 69 WYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 128
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + L Y G + +LAV+ +
Sbjct: 129 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFGKN--IPINLVLAVIA-E 185
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 186 VVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQAAILKVKEIKNGRLAMFS 242
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANNAWVY---ATKFVP 266
M GFF+QA VTG+GP+ENL HL +P NN AT+ VP
Sbjct: 243 MLGFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVIGGATERVP 285
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/198 (53%), Positives = 129/198 (65%), Gaps = 8/198 (4%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L GEFPGDYG+D AGL DP AFA E++H RWAMLGALG + PE+L+ + V
Sbjct: 3 PEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGIVH 62
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHA--QSILAVLGFQVVLMGLVEGFRINGLP-- 182
F EPVW+K G LDYLG P L A Q I+ + Q +LM E R G+
Sbjct: 63 FVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAICQALLMVGPEYARYCGIEAL 122
Query: 183 ---GVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G+ DL YPGG FDPLGL+ DPV F ELKVKEIKNGRLAM + GF+VQA VTG
Sbjct: 123 EPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYVQAAVTG 182
Query: 239 KGPLENLLDHLENPVANN 256
KGP++NL++HL +P+ NN
Sbjct: 183 KGPVQNLIEHLSDPLHNN 200
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/212 (52%), Positives = 133/212 (62%), Gaps = 10/212 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR YL + P YLTGE PGDYG+D GLS PE F R +A E+IH RWA
Sbjct: 6 WYGPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWA 65
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLG-NPNLVHAQSILAVLGF 165
MLGA G + PE K+ V E VW+K GA + + Y G L A +++A
Sbjct: 66 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIA---- 121
Query: 166 QVVLMGLVEGFR-INGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
+V+L+G E +R N P + + L+PGG FDPLGLA DP FA LKVKEIKNGRLAM
Sbjct: 122 EVILVGGAEYYRSTNKSPLGSDLDRLHPGGA-FDPLGLAKDPDQFALLKVKEIKNGRLAM 180
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FSM GFFVQA VTG+GP+ENL HL +P NN
Sbjct: 181 FSMLGFFVQAYVTGEGPVENLSAHLSDPFGNN 212
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 130/210 (61%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L A P YL GE PGDYG+D GL PE F + +A E+IH RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWA 144
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L Y G ++ ++A + +
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVVAE 201
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
V+L+G E +R G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMFS
Sbjct: 202 VILVGGAEYYRATN--GLDFEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFS 258
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFFVQA VTG+GP+ENL HL +P NN
Sbjct: 259 MLGFFVQAYVTGEGPVENLAAHLSDPFGNN 288
>gi|305377030|dbj|BAJ15878.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 125
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 99/127 (77%), Positives = 106/127 (83%), Gaps = 3/127 (2%)
Query: 143 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLG 201
GGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG FDPLG
Sbjct: 1 GGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLG 58
Query: 202 LADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYA 261
LADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL D L +PV NNAW YA
Sbjct: 59 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADGLADPVNNNAWAYA 118
Query: 262 TKFVPGS 268
T FVPG
Sbjct: 119 TNFVPGK 125
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 138/217 (63%), Gaps = 11/217 (5%)
Query: 45 MGNEL--WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALE 99
+G+EL WYGPDR +L ++ P YL GE PGDYG+D GLS +P+ FAR +A E
Sbjct: 58 IGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYE 117
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
+IH RWAMLGA G I PE K+ E VWFK GA + L+Y GN ++
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVA 177
Query: 160 LAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
+ +VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKN
Sbjct: 178 VVA---EVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKN 231
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAMFSM GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 232 GRLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 268
>gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida]
Length = 125
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/127 (77%), Positives = 106/127 (83%), Gaps = 3/127 (2%)
Query: 143 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLG 201
G LDYLGNP+LVHAQSILA+ QVVLMG VEG+R+ G P +GE D LYPGG FDPLG
Sbjct: 1 GELDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVIDPLYPGGS-FDPLG 58
Query: 202 LADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYA 261
LA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YA
Sbjct: 59 LAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYA 118
Query: 262 TKFVPGS 268
T FVPG
Sbjct: 119 TNFVPGK 125
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 139/217 (64%), Gaps = 11/217 (5%)
Query: 45 MGNEL--WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALE 99
+G+EL WYGPDR +L ++ P YL GE PGDYG+D GLS PE F++ +A E
Sbjct: 58 IGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYE 117
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
+IH RWAMLGA G I PE K+ E VWFK GA + L+Y GN ++ +
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---L 174
Query: 160 LAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
+ + +VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKN
Sbjct: 175 IVAVAAEVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKN 231
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAMFSM GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 232 GRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 139/217 (64%), Gaps = 11/217 (5%)
Query: 45 MGNEL--WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALE 99
+G+EL WYGPDR +L ++ P YL GE PGDYG+D GLS PE F++ +A E
Sbjct: 58 IGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYE 117
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
+IH RWAMLGA G I PE K+ E VWFK GA + L+Y GN ++ +
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---L 174
Query: 160 LAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
+ + +VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKN
Sbjct: 175 IVAVAAEVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKN 231
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAMFSM GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 232 GRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 133/210 (63%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P+YL GE PGDYG+D GL PE FA+ +A E+IH RWA
Sbjct: 61 WYGPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 120
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + L+Y G + ++AV+ +
Sbjct: 121 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVVAVIA-E 177
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LK KEIKNGRLAMF+
Sbjct: 178 VVLLGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAAILKAKEIKNGRLAMFA 234
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 235 MLGFFLQAYVTGEGPVENLSKHLSDPFGNN 264
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 139/218 (63%), Gaps = 13/218 (5%)
Query: 45 MGNEL--WYGPDRVKYL--GPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALE 99
+G+EL WYGPDR +L G ++ P YL GE PGDYG+D GLS +P+ FAR +A E
Sbjct: 58 IGDELAKWYGPDRRIFLLEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYE 117
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
+IH RWAMLGA G I PE K+ E VWFK GA + L+Y GN ++
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVA 177
Query: 160 LAVLGFQVVLMGLVEGFR-INGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
+ +VVL+G E +R INGL G+ L+PGG FDPLGLA DP A LKVKEIK
Sbjct: 178 VVA---EVVLVGGAEYYRIINGLDLEGK---LHPGGP-FDPLGLASDPDQAAPLKVKEIK 230
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
NGRLAMF M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 231 NGRLAMFPMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 268
>gi|157267420|gb|ABV26426.1| light-harvesting chlorophyll a/b-binding protein [Camellia
sinensis]
Length = 153
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/154 (61%), Positives = 109/154 (70%), Gaps = 8/154 (5%)
Query: 12 SSTSLRATPFLGQSRTTANALKDVVPMGN-------AKYTMGNELWYGPDRVKYLGPFSA 64
S+ +L + F G++ + + D+V G K WYGPDRV YLGP S
Sbjct: 1 STMALSSPSFAGKAIKLSPSTPDLVGRGRISMRKTGGKPVRSGSPWYGPDRVLYLGPLSG 60
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 61 DPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLAR-NG 119
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
V F E VWFKAGAQIFSEGGLDYLGNP+L+HAQS
Sbjct: 120 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 153
>gi|356532722|ref|XP_003534920.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 125
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/124 (76%), Positives = 104/124 (83%), Gaps = 3/124 (2%)
Query: 146 DYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLAD 204
DYLGNP+L+HAQSILA+ QV+LMG VEG+RI G P +GE D +YPGG FDPLGLAD
Sbjct: 4 DYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLAD 61
Query: 205 DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT F
Sbjct: 62 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNF 121
Query: 265 VPGS 268
VPG
Sbjct: 122 VPGK 125
>gi|397789264|gb|AFO67221.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 152
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/154 (61%), Positives = 111/154 (72%), Gaps = 13/154 (8%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM----------GNELWYGPDRVKYL 59
A+S+ +L + F G++ A + ++ GN + +M WYGPDRVKYL
Sbjct: 2 AASTMALSSPSFAGKAVKVAPSSSEL--FGNGRISMRKTGKKPVASSGSPWYGPDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNL 153
+ V F E VWFKAGAQIFSEGGLDYLGNP+L
Sbjct: 120 AR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 152
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 132/210 (62%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR YL ++ P YL GE PGDYG+D GL PE FA+ +A E+IH RWA
Sbjct: 68 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 127
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE L K+ E VWFK GA + L+Y GN ++ ++ + +
Sbjct: 128 MLGAAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LILAVVAE 184
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 185 VVLVGGAEYYRITN--GLEFDDKLHPGGP-FDPLGLATDPDQAALLKVKEIKNGRLAMFS 241
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF+QA VTG+GP ENL HL +P NN
Sbjct: 242 MLGFFIQAYVTGEGPFENLCAHLSDPFGNN 271
>gi|357496383|ref|XP_003618480.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355493495|gb|AES74698.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 180
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 108/132 (81%), Gaps = 3/132 (2%)
Query: 138 QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQY 196
QIFS+GGLDYLGNP+LVHAQSILA+ +LMG VEG+RI P +GE D LYPGG
Sbjct: 51 QIFSDGGLDYLGNPSLVHAQSILAIWVVLAILMGAVEGYRIADGP-LGEVVDPLYPGGS- 108
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVT KGPLENL DH+ +PV +N
Sbjct: 109 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPLENLADHIADPVNSN 168
Query: 257 AWVYATKFVPGS 268
AW +AT FVPG
Sbjct: 169 AWAFATNFVPGK 180
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 40/45 (88%)
Query: 224 MFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
MFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT FVPG+
Sbjct: 1 MFSMFGFFVQAIVTGKGPLENLADHITDPVNNNAWAFATNFVPGN 45
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/211 (51%), Positives = 132/211 (62%), Gaps = 12/211 (5%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYG R YL + P YLTGE PGDYG+D GLS P F + +A E+IH RWA
Sbjct: 58 WYGESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWA 117
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G + PE K+ E VWFK GA + G L+Y G + +LAVL +
Sbjct: 118 MLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFGAN--IPINLVLAVLA-E 174
Query: 167 VVLMGLVEGFR-INGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
V+L+G E +R IN L G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 175 VILVGGAEYYRSINNL-GL---DRLHPGGP-FDPLGLAKDPDNFALLKVKEIKNGRLAMF 229
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+M GFF+QA TG+GP+ENL HL +P NN
Sbjct: 230 AMLGFFIQAYATGEGPVENLTTHLSDPFGNN 260
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 132/218 (60%), Gaps = 8/218 (3%)
Query: 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
LWYG +R ++LGP P+YLTGE PGDYG+D AGLS D AF R E++H RWA
Sbjct: 104 ESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARWA 163
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA--QSILAVLG 164
ML ALG + PEVL+ F EPVW++ G LDYLG P L A Q +L +
Sbjct: 164 MLAALGALAPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIAI 223
Query: 165 FQVVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
Q +LM E R G+ + G+ YPGG FDPL L+ D V ELKVKEIK
Sbjct: 224 CQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLNLSSDAVALEELKVKEIK 283
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
NGRLAM + GF+ QA +TGKGP++NL++H+ +P NN
Sbjct: 284 NGRLAMVAWLGFYAQAALTGKGPVQNLVEHISDPFHNN 321
>gi|302856917|ref|XP_002959743.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
gi|300254465|gb|EFJ39192.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
Length = 179
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/119 (72%), Positives = 98/119 (82%), Gaps = 2/119 (1%)
Query: 50 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYGP+R K+LGP+S TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV 167
GALGC+TP++L K V F E +WFKAGAQIF EGGLDYLGN +LVHAQ+I+A L QV
Sbjct: 97 GALGCVTPKLLSK-NGVQFSEALWFKAGAQIFQEGGLDYLGNLSLVHAQNIVATLACQV 154
>gi|449515811|ref|XP_004164941.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like,
partial [Cucumis sativus]
Length = 149
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 108/151 (71%), Gaps = 12/151 (7%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+SS +L + F G+ + ++ GN++ TM WYGPDRVKYLG
Sbjct: 2 AASSMALSSPSFAGKVVKLTPSSPEL--FGNSRVTMRKSATKSVSSGSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 119
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 151
+ V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct: 120 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 133/210 (63%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F + +A E+IH RWA
Sbjct: 68 WYGPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWA 127
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + L+Y GN ++ ++ + +
Sbjct: 128 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LILAVVAE 184
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 185 VVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFS 241
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 242 MLGFFIQAYVTGEGPVENLSAHLSDPFGNN 271
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 144/245 (58%), Gaps = 12/245 (4%)
Query: 24 QSRTTAN---ALKDVVPMGNAKYTMGNE-LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYG 79
QSR N A+K+ NE LWYG +R ++LGP P+YLTGE PGDYG
Sbjct: 79 QSRMEENKKAAVKNSSKFKALAEKAKNESLWYGEERPRWLGPIPYDYPAYLTGELPGDYG 138
Query: 80 WDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQI 139
+D AGL DP AF + E++H RWAML ALG + PE+L+ F EPVW++ G
Sbjct: 139 FDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGAFHFVEPVWWRVGYSK 198
Query: 140 FSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG------EGNDLY 191
LDYLG P + +Q ++ + Q +LM E R G+ + G+ Y
Sbjct: 199 LKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINY 258
Query: 192 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLEN 251
PGG FDPL L+ DPV F ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDHL +
Sbjct: 259 PGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAATGKGPVQNLLDHLAD 318
Query: 252 PVANN 256
P NN
Sbjct: 319 PFHNN 323
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 130/210 (61%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YL GE PGDYG+D GLS PE FA+ +A E+IH RWA
Sbjct: 67 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 126
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G + PE K+ E VWFK GA + L+Y G ++ + +
Sbjct: 127 MLGAAGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA---E 183
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 184 VVLLGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQAAILKVKEIKNGRLAMFA 240
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF+QA VTGKGP+ENL HL +P NN
Sbjct: 241 MLGFFIQAYVTGKGPVENLAAHLSDPFGNN 270
>gi|115776|sp|P14584.1|CB21_RAPSA RecName: Full=Chlorophyll a-b binding of LHCII type 1 protein;
AltName: Full=Chlorophyll a-b binding of LHCII type I
protein; Short=CAB; Short=LHCP
gi|21100|emb|CAA34640.1| chlorophyll a/b binding protein (124 AA) [Raphanus sativus]
Length = 124
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/125 (73%), Positives = 100/125 (80%), Gaps = 2/125 (1%)
Query: 145 LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLA 203
LDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G +GE D LYPGG FDPL
Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGS-FDPLASL 59
Query: 204 DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATK 263
DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT
Sbjct: 60 TDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATN 119
Query: 264 FVPGS 268
FVPG
Sbjct: 120 FVPGK 124
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/196 (51%), Positives = 127/196 (64%), Gaps = 11/196 (5%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A+ P++LTGE+PGD G+D GL+ DPE FA+NR EV HGRWAMLG +GC+ PEV L
Sbjct: 367 AEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGN-L 425
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL-- 181
+ + P W++AGA + + G LDYLGNPNLVHA ++ + ++L +E +R NG
Sbjct: 426 GIA-QLPAWYEAGA-VANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWRWNGQIA 483
Query: 182 -PGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
YPGG FDPL L P ELK+KEIKNGRLAM MFGF+ Q+ VTG+G
Sbjct: 484 PEAKSAERTTYPGGP-FDPLKLGASP----ELKLKEIKNGRLAMVGMFGFWAQSYVTGEG 538
Query: 241 PLENLLDHLENPVANN 256
PL NL HL +P NN
Sbjct: 539 PLANLAAHLADPAHNN 554
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 124/196 (63%), Gaps = 11/196 (5%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A+ P++LTGE+PGD G+D GL+ DP FA+ R EV HGRWAMLG +GC+ PEV L
Sbjct: 158 AEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGN-L 216
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL-- 181
+ + P W+ A A + + LDYLGNPNLVHA ++ + ++LMG VE +R NG
Sbjct: 217 GIA-QLPAWYDA-ATVANTSNLDYLGNPNLVHASNVSFIALSTLLLMGPVEAWRWNGALA 274
Query: 182 -PGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
YPGG FDPL L P ELK+KEIKNGRLAM MFGF+ Q+ VTG+G
Sbjct: 275 SEAKSAERTTYPGGP-FDPLKLGASP----ELKLKEIKNGRLAMVGMFGFWAQSYVTGEG 329
Query: 241 PLENLLDHLENPVANN 256
PL NL HL +P NN
Sbjct: 330 PLANLAAHLADPAHNN 345
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 81/130 (62%), Gaps = 9/130 (6%)
Query: 130 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND 189
P W++AGA + + G LDYLGNPNLVHA ++ + ++L +E +R NG +
Sbjct: 13 PAWYEAGA-VANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWRWNGQIAPDAKSK 71
Query: 190 ---LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 246
YPGG FDPL L P ELK+KEIKNGRLAM MFGF+ Q+ VTG+GPL NL
Sbjct: 72 EWTTYPGGP-FDPLKLGASP----ELKLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLA 126
Query: 247 DHLENPVANN 256
HL +P NN
Sbjct: 127 AHLADPAHNN 136
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 112/267 (41%), Positives = 154/267 (57%), Gaps = 23/267 (8%)
Query: 9 TASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYL--GPFS-AQ 65
TA+S+ + + T + + A K +G + + WYGPDRV +L G + ++
Sbjct: 10 TAASAPAKKGTSSTKVVKPSGKATKGW--LGGQGGAVNLDKWYGPDRVLFLPSGLYDRSE 67
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
P+YL GE GDYG+D GL D E A+ R E++H RWAML A G + PE L+
Sbjct: 68 VPAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLAAAGILIPEGLQA-NGA 126
Query: 126 DFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFRINGL-- 181
+ K VWF+ GA++ + G L+Y P + + + AV+ +V LMG VE +R NG
Sbjct: 127 NIKGGVWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAIEVGLMGAVEFYRRNGTGP 186
Query: 182 ----PGVG-------EGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
PG+G EG D +YPGG FDPLGLADDP F ELKVKEIKNGRLAM S+
Sbjct: 187 AGYSPGIGKFDSSVFEGLDSIYPGGP-FDPLGLADDPEVFQELKVKEIKNGRLAMVSVLA 245
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANN 256
F +Q+ VTG+GP N + H+++P N
Sbjct: 246 FAIQSYVTGEGPYTNWIKHVQDPFGYN 272
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 133/210 (63%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YL GE PG+YG+D GLS PE FA+ +A E+IH RWA
Sbjct: 68 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWA 127
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + L+Y G ++ ++ + +
Sbjct: 128 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LILAVVAE 184
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 185 VVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQAAILKVKEIKNGRLAMFS 241
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 242 MLGFFIQAYVTGQGPVENLAAHLSDPFGNN 271
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 129/210 (61%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L P YL GE PGDYG+D GL PE F + +A E+IH RWA
Sbjct: 84 WYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWA 143
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + G L Y G ++ ++A + +
Sbjct: 144 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVVAE 200
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +R G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMFS
Sbjct: 201 VVLVGGAEYYRATN--GLNFDDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFS 257
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 258 MLGFFLQAYVTGEGPVENLAAHLSDPFGNN 287
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 129/210 (61%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YL GE GDYG+D GL PE FA+ +A E+IH RWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE L K+ E VWFK GA + L+Y G ++ + +
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVA---E 178
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 179 VVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFA 235
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 236 MLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 132/208 (63%), Gaps = 9/208 (4%)
Query: 52 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
GPDR +L ++ P YL GE PGDYG+D GLS PE F++ +A E+IH RWAML
Sbjct: 6 GPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAML 65
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
GA G I PE K+ E VWFK GA + L+Y GN ++ ++ + +VV
Sbjct: 66 GAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAAEVV 122
Query: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
L+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFSM
Sbjct: 123 LVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSML 179
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANN 256
GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 180 GFFIQAYVTGEGPVENLSKHLSDPFGNN 207
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 129/210 (61%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YL GE GDYG+D GL PE FA+ +A E+IH RWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE L K+ E VWFK GA + L+Y G ++ + +
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVA---E 178
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 179 VVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFA 235
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 236 MLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 129/210 (61%), Gaps = 9/210 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YL GE GDYG+D GL PE FA+ +A E+IH RWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE L K+ E VWFK GA + L+Y G ++ + +
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVA---E 178
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 179 VVLLGGSEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFA 235
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 236 MLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
>gi|159138449|gb|ABW89227.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/118 (77%), Positives = 99/118 (83%), Gaps = 3/118 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+L+HAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG FDPLGLADDP FA
Sbjct: 1 SLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPXAFA 58
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PVANNAW YAT FVPG
Sbjct: 59 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWSYATNFVPGK 116
>gi|159138421|gb|ABW89213.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138423|gb|ABW89214.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138425|gb|ABW89215.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138429|gb|ABW89217.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138433|gb|ABW89219.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138437|gb|ABW89221.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138439|gb|ABW89222.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138441|gb|ABW89223.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138443|gb|ABW89224.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138445|gb|ABW89225.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138447|gb|ABW89226.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138451|gb|ABW89228.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138453|gb|ABW89229.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138455|gb|ABW89230.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138457|gb|ABW89231.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/118 (77%), Positives = 99/118 (83%), Gaps = 3/118 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+L+HAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG FDPLGLADDP FA
Sbjct: 1 SLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFA 58
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PVANNAW YAT FVPG
Sbjct: 59 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWSYATNFVPGK 116
>gi|159138427|gb|ABW89216.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138431|gb|ABW89218.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138435|gb|ABW89220.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/118 (77%), Positives = 100/118 (84%), Gaps = 3/118 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+L+HAQSILA+ QV+LMG VEG+RI G P +GE D LYPGG FDPLGLADDP FA
Sbjct: 1 SLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFA 58
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PVANNAW YAT FVPG+
Sbjct: 59 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWSYATNFVPGN 116
>gi|224928|prf||1204205C protein 1C,chlorophyll binding
Length = 165
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/117 (77%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FA
Sbjct: 50 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFA 107
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 108 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 164
>gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
gi|224931|prf||1204205F protein 3B,chlorophyll binding
Length = 167
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/121 (76%), Positives = 101/121 (83%), Gaps = 4/121 (3%)
Query: 149 GNP-NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDP 206
G+P +LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP
Sbjct: 48 GSPWSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDP 105
Query: 207 VTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT FVP
Sbjct: 106 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVP 165
Query: 267 G 267
G
Sbjct: 166 G 166
>gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precursor - tomato (fragments)
gi|224930|prf||1204205E protein 3A,chlorophyll binding
Length = 167
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/121 (76%), Positives = 101/121 (83%), Gaps = 4/121 (3%)
Query: 149 GNP-NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDP 206
G+P +LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP
Sbjct: 48 GSPWSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDP 105
Query: 207 VTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVP 266
FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT FVP
Sbjct: 106 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVP 165
Query: 267 G 267
G
Sbjct: 166 G 166
>gi|115821|sp|P14275.1|CB2C_SOLLC RecName: Full=Chlorophyll a-b binding protein 1C, chloroplastic;
AltName: Full=LHCII type I CAB-1C; Short=LHCP; Flags:
Precursor
Length = 265
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 91/117 (77%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FA
Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFA 207
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 264
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/192 (52%), Positives = 125/192 (65%), Gaps = 6/192 (3%)
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
+ P YL GE PGDYG+D GLS PE F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 1 EVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 60
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
E VWFK GA + L+Y GN ++ ++ + +VVL+G E +RI + G+
Sbjct: 61 NCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAAEVVLVGGAEYYRI--INGL 115
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 244
+ L+PGG FDPLGLA DP A LKVKEIKNGRLAMFSM GFF+QA VTG+GP+EN
Sbjct: 116 DLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVEN 174
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 175 LSKHLSDPFGNN 186
>gi|115824|sp|P14277.1|CB2F_SOLLC RecName: Full=Chlorophyll a-b binding protein 3B, chloroplastic;
AltName: Full=LHCII type I CAB-3B; Short=LHCP; Flags:
Precursor
Length = 267
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/117 (76%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FA
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFA 209
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPG 266
>gi|115823|sp|P14276.1|CB2E_SOLLC RecName: Full=Chlorophyll a-b binding protein 3A, chloroplastic;
AltName: Full=LHCII type I CAB-3A; Short=LHCP; Flags:
Precursor
Length = 267
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/117 (76%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FA
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFA 209
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPG 266
>gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precursor - tomato (fragments)
gi|224926|prf||1204205A protein 1A,chlorophyll binding
Length = 165
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/117 (77%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FA
Sbjct: 50 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFA 107
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 108 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 164
>gi|115816|sp|P14274.1|CB2A_SOLLC RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type I CAB-1A; Short=LHCP; Flags:
Precursor
Length = 265
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/117 (77%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FA
Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFA 207
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 264
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 134/226 (59%), Gaps = 21/226 (9%)
Query: 50 WYGPDRVKYL--GPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L G + ++ P YL GE GDYG+D GL DPE A+ R E++H RWA
Sbjct: 52 WYGPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 111
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 164
ML A G + PE L+ + K WF+ GA++ + G L+Y P + + + AV+
Sbjct: 112 MLAAAGILIPEGLQA-NGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIA 170
Query: 165 FQVVLMGLVEGFRINGL------PGVG-------EGND-LYPGGQYFDPLGLADDPVTFA 210
+V LMG VE +R NG PG+G +G D LYPGG FDPLGLADDP
Sbjct: 171 VEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGP-FDPLGLADDPEVLQ 229
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
ELKVKEIKNGRLAM S+ GF VQ+ VTG+GP N H+ +P N
Sbjct: 230 ELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYN 275
>gi|115822|sp|P10707.1|CB2D_SOLLC RecName: Full=Chlorophyll a-b binding protein 1D; AltName:
Full=LHCII type I CAB-1D; Short=LHCP
gi|170428|gb|AAA34158.1| chlorophyll a/b-binding protein Cab-1D, partial [Solanum
lycopersicum]
gi|224929|prf||1204205D protein 1D,chlorophyll binding
Length = 116
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/118 (77%), Positives = 98/118 (83%), Gaps = 3/118 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FA
Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFA 58
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 59 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
>gi|297740653|emb|CBI30835.3| unnamed protein product [Vitis vinifera]
Length = 148
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/180 (55%), Positives = 107/180 (59%), Gaps = 53/180 (29%)
Query: 89 PEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYL 148
P FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSE
Sbjct: 22 PNTFAKNRELEVIHCRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGAQIFSE------ 74
Query: 149 GNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVT 208
V+LMG VEG+RI G PLG
Sbjct: 75 ------------------VILMGAVEGYRIAG-----------------GPLG------- 92
Query: 209 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 93 ----EVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 148
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/195 (51%), Positives = 122/195 (62%), Gaps = 9/195 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F + +A E+IH RWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + L+Y G + +LAV+ +
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-E 188
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
V+L+G E FRI G+G + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 189 VILVGGAEYFRITN--GLGFDDKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFA 245
Query: 227 MFGFFVQAIVTGKGP 241
M GFF+QA VTG P
Sbjct: 246 MLGFFLQAYVTGDVP 260
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 134/226 (59%), Gaps = 21/226 (9%)
Query: 50 WYGPDRVKYL--GPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L G + ++ P YL GE GDYG+D GL DPE A+ R E++H RWA
Sbjct: 22 WYGPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 81
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 164
ML A G + PE L+ + K WF+ GA++ + G L+Y P + + + AV+
Sbjct: 82 MLAAAGILIPEGLQA-NGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIA 140
Query: 165 FQVVLMGLVEGFRINGL------PGVG-------EGND-LYPGGQYFDPLGLADDPVTFA 210
+V LMG VE +R NG PG+G +G D LYPGG FDPLGLADDP
Sbjct: 141 VEVGLMGAVEFYRRNGSGPAGYSPGIGKFDSSVFDGLDPLYPGGP-FDPLGLADDPEVLQ 199
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
ELKVKEIKNGRLAM S+ GF VQ+ VTG+GP N H+ +P N
Sbjct: 200 ELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYN 245
>gi|170409|gb|AAA34150.1| chlorophyll a/b-binding protein Cab-1A, partial [Solanum
lycopersicum]
gi|170414|gb|AAA34152.1| chlorophyll a/b-binding protein Cab-1C, partial [Solanum
lycopersicum]
Length = 116
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/118 (77%), Positives = 98/118 (83%), Gaps = 3/118 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FA
Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFA 58
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 59 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 116
>gi|413933709|gb|AFW68260.1| hypothetical protein ZEAMMB73_510715 [Zea mays]
Length = 144
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/141 (63%), Positives = 98/141 (69%), Gaps = 4/141 (2%)
Query: 11 SSSTSLRATPFLGQSRTTANALKDV---VPMGNAKYTMGNELWYGPDRVKYLGPFSAQTP 67
++S + T FLGQ+ + A D + M + +WY PDR KYL PFS QT
Sbjct: 2 ATSALQQTTSFLGQALVSRPAGVDAGSRITMRRTVKSAPQSIWYDPDRPKYLAPFSEQTS 61
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127
SYLTGEFPGDYGWDTAGLSAD E FARNR LEVIH WAMLGALGC+ PEVL K V F
Sbjct: 62 SYLTGEFPGDYGWDTAGLSADHETFARNRELEVIHSWWAMLGALGCVFPEVLAK-NDVKF 120
Query: 128 KEPVWFKAGAQIFSEGGLDYL 148
E VWFKAGAQIFSEGGLDYL
Sbjct: 121 GEVVWFKAGAQIFSEGGLDYL 141
>gi|428230868|gb|AFY99056.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 107
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/102 (79%), Positives = 88/102 (86%), Gaps = 1/102 (0%)
Query: 76 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKA 135
GDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V F E VWFKA
Sbjct: 7 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKA 65
Query: 136 GAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
G+QIFSEGGLDYLGNPNLVHAQSILA+ QVVLMGL+EG+R
Sbjct: 66 GSQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYR 107
>gi|170421|gb|AAA34155.1| chlorophyll a/b-binding protein Cab-3A, partial [Solanum
lycopersicum]
gi|170426|gb|AAA34157.1| chlorophyll a/b-binding protein Cab-3B, partial [Solanum
lycopersicum]
Length = 116
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/118 (76%), Positives = 98/118 (83%), Gaps = 3/118 (2%)
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFA 210
+LVHAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLA+DP FA
Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFA 58
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW +AT FVPG
Sbjct: 59 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 116
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 133/238 (55%), Gaps = 21/238 (8%)
Query: 38 MGNAKYTMGNELWYGPDRVKYL-GPFSA--QTPSYLTGEFPGDYGWDTAGLSADPEAFAR 94
+G+ T+ + WYGPDR +L G A + L G PGDYG+D GL+ D E ++
Sbjct: 36 LGSGSKTINLDKWYGPDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSK 95
Query: 95 NRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--N 152
+A E++H RWAML A G I PE L D K WF+ GA + + G L++ P N
Sbjct: 96 YQANELLHARWAMLAAAGAIIPEGLAA-NGADVKGATWFETGAAMLNGGTLNWFAVPIAN 154
Query: 153 LVHAQSILAVLGFQVVLMGLVEGFRING------LPGVGEGND--------LYPGGQYFD 198
+ + + V+ V LMG E +R G PGVG+ ++ LYPGG FD
Sbjct: 155 ISNPLPLFVVVAANVALMGAAENYRRTGEGPAGYSPGVGKFDESAYDSMDSLYPGGP-FD 213
Query: 199 PLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
PLGLADDP AELKVKEIKNGRLAM S GF VQA VTG+GP N H+ +P N
Sbjct: 214 PLGLADDPEVLAELKVKEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADPFGYN 271
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 110/265 (41%), Positives = 146/265 (55%), Gaps = 24/265 (9%)
Query: 11 SSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYL--GPFS-AQTP 67
+S T+ +AT Q + A+ + G A G + WYGP R +L G + P
Sbjct: 57 ASKTASKATK---QVKKAASGKRTKGWFGEAGGAQGLDKWYGPSRALFLPGGLLDPSDVP 113
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127
+YL G GDYG+D GL D + RA E+IH RWAML A G I PE L+
Sbjct: 114 TYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAMLAAAGIIIPEGLQA-NGAAI 172
Query: 128 KEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFRING----- 180
K WF+ GA++ + G L+Y P + + + V+ +V L+G VE +R +G
Sbjct: 173 KGGTWFETGAEMLNGGTLNYFAVPWGIINNPLPLFLVVVIEVALLGAVERYRQSGEGPPG 232
Query: 181 -LPGVGEGN--------DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 231
PGVG+ + +LYPGG FDPLGLADDP TFAELKVKEIKNGRLA+ S+ GF
Sbjct: 233 YSPGVGKFDSSIFSGLDNLYPGGP-FDPLGLADDPETFAELKVKEIKNGRLALISVLGFA 291
Query: 232 VQAIVTGKGPLENLLDHLENPVANN 256
VQ+ VTG+GP N H+ +P N
Sbjct: 292 VQSYVTGEGPYANWSKHVADPFGYN 316
>gi|302143545|emb|CBI22106.3| unnamed protein product [Vitis vinifera]
Length = 147
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 113/219 (51%), Gaps = 88/219 (40%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFSA DPE FA+NR LEVIH RWAMLG
Sbjct: 17 WYGPDRVKYLGPFSA-----------------------DPETFAKNRELEVIHCRWAMLG 53
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L S G+ + G V+L
Sbjct: 54 ALGCVFPELL---------------------SRNGVKF----------------GEAVIL 76
Query: 170 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
MG VEG+RI G PLG +VKEIKNGRLAMFSMFG
Sbjct: 77 MGAVEGYRIAG-----------------GPLG-----------EVKEIKNGRLAMFSMFG 108
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 109 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 147
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 126/219 (57%), Gaps = 9/219 (4%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG +R K+LGP S P+YL G PGDY +D L+ D + F + E++H RWAMLG
Sbjct: 68 WYGEERPKWLGPLSYDYPAYLRGGAPGDYAYDPLQLAQDQDKFDQYFEFELLHARWAMLG 127
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA--QSILAVLGFQV 167
ALG PE+L+ DF E W+ G L+YLG L A Q I + QV
Sbjct: 128 ALGAGIPEILQYSGVSDFLEARWWAVGGAKLQGEDLNYLGVSGLRIAGGQGIAIIAICQV 187
Query: 168 VLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
+LM E R G+ + G+ YPGG FDPLGL+ DP +FA+L+VKEIKNGR
Sbjct: 188 LLMFGPEYARACGIEALEPLGLYLPGDKNYPGG-LFDPLGLSKDPASFADLQVKEIKNGR 246
Query: 222 LAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVY 260
LA+ + GF QA VT KGP+ +LLD +PV NN + Y
Sbjct: 247 LALVAWVGFAAQAAVTRKGPIADLLDFAADPVHNNIFAY 285
>gi|117663141|gb|ABK55743.1| chloroplast type III LHCII CAB precursor protein [Cucumis sativus]
Length = 84
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 80/84 (95%), Positives = 82/84 (97%)
Query: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
LM LVEGFRINGL GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF
Sbjct: 1 LMVLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 60
Query: 229 GFFVQAIVTGKGPLENLLDHLENP 252
GFFVQAIVTGKGPLENLLDHL++P
Sbjct: 61 GFFVQAIVTGKGPLENLLDHLDDP 84
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 121/207 (58%), Gaps = 9/207 (4%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
W+G R +LGP S Q P +L+GE PGDYGWD AGL DP R LE++H RWAMLG
Sbjct: 123 WFGAARPLWLGPLSTQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWAMLG 182
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAG-AQIFSEGGLDYLGNPNLVHA--QSILAVLGFQ 166
ALG + PE+L+ F E W+ G A++ + L YLG P L A Q + + Q
Sbjct: 183 ALGAVVPELLQLAGSATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQGVAIIAFCQ 242
Query: 167 VVLMGLVEGFRINGLPGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNG 220
V+LM E R G+ + G+ YPGG FDPL L+ D + ++V+EIKNG
Sbjct: 243 VLLMFGPEYARACGISALEPLGVFLPGDKNYPGGWLFDPLQLSGDAERYEAMRVREIKNG 302
Query: 221 RLAMFSMFGFFVQAIVTGKGPLENLLD 247
RLAM + GF QA VT +GP++NLLD
Sbjct: 303 RLAMVAWLGFAAQAAVTRQGPVQNLLD 329
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 129/228 (56%), Gaps = 21/228 (9%)
Query: 48 ELWYGPDRVKYL--GPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGR 104
E WYGP+R +L G P YL GE GDYG+D GL D E + RA E++H R
Sbjct: 44 EKWYGPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHAR 103
Query: 105 WAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLV--HAQSILAV 162
WAML A G + PE L+ D K WF+ GA++ + G L+Y P V + + AV
Sbjct: 104 WAMLAAAGILIPEGLQAN-GADIKGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAV 162
Query: 163 LGFQVVLMGLVEGFRINGL------PGVGEGN--------DLYPGGQYFDPLGLADDPVT 208
++VL+G VE FR++G PGVG+ + LYPGG FDPL LADDP
Sbjct: 163 TLIEIVLLGAVEKFRVDGTGPAGFSPGVGKFDSDIFDGLDQLYPGGP-FDPLNLADDPEV 221
Query: 209 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FAEL+VKE KNGRLAM + F +Q+ VTG+GP N H+ +P N
Sbjct: 222 FAELQVKETKNGRLAMVGVLAFAIQSYVTGEGPYANFTKHISDPFGYN 269
>gi|145078729|tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGP+R +LGP S P +L GE PGDYG+D GL+ P R R E+I+GRWAMLG
Sbjct: 104 WYGPNRKLFLGPLSDGAPEHLKGELPGDYGFDVLGLATQPTRLERYRQGEIINGRWAMLG 163
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
+GCI PE+L + V F EPVWFK GA +FSE GL+YLGNP+L+HA+SI A+L +++
Sbjct: 164 IVGCIVPELLARNYGVPFPEPVWFKTGATVFSEEGLNYLGNPSLIHAKSIAAILVTEILF 223
Query: 170 MGLVEGFRINGLPGVGEGNDL 190
+G E FR++G P +G DL
Sbjct: 224 VGAAEAFRVSGGP-LGPATDL 243
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 53/82 (64%)
Query: 184 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
+G DL G+ FDPLGL+ D FAELKVKE+KNGRLAM M G F+Q TGKGPL+
Sbjct: 4 LGPATDLVYPGKAFDPLGLSKDETAFAELKVKEVKNGRLAMLGMLGLFMQGFATGKGPLQ 63
Query: 244 NLLDHLENPVANNAWVYATKFV 265
NL DHL +P N + + +
Sbjct: 64 NLADHLADPTGANIITFHQRVL 85
>gi|167997433|ref|XP_001751423.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697404|gb|EDQ83740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 244
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/103 (79%), Positives = 88/103 (85%), Gaps = 3/103 (2%)
Query: 167 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
VVLMG VEG+R+ G P +GE D +YPGG FDPLGLADDP TFAELKVKEIKNGRLAMF
Sbjct: 144 VVLMGAVEGYRVAGGP-LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMF 201
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
SMFGFFVQAIVTGKGPLENL DHL +PVANNAW YAT F PG+
Sbjct: 202 SMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYATNFTPGN 244
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 121/212 (57%), Gaps = 9/212 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR KYL A P+Y+ GE GDYG+D GL + + R EV+HGRWA
Sbjct: 58 WYGPDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGL-GNKGGVEKYRPYEVLHGRWA 116
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGF 165
MLG +G + PE L + K VW+ +GA + L + G PN V LAV+ F
Sbjct: 117 MLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLA--LAVI-F 173
Query: 166 QVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
+V + L+E +R G G D LYPGG+YFDPLGLA DP ELKVKEIKNGRLAM
Sbjct: 174 EVAVFFLIENYRYQQDGPWGTGLDPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAM 233
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+ GF VQ VT +GP N HL +P N
Sbjct: 234 MAFLGFVVQYFVTKEGPYANWSKHLADPFGYN 265
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 127/217 (58%), Gaps = 14/217 (6%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGP R + GP + +L G GD G+D GLS + +FA+ + E++H RWAMLG
Sbjct: 177 WYGPSRPRLPGPLG--SAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLG 234
Query: 110 ALGCITPEVLEKWLR-VDFKEPVWFKAGA-QIFSEGGLDYLGNP--NLVHAQSILAVLGF 165
+GC+ PE+L LR VD EPVW+K GA ++ S+ L++ G + Q I +
Sbjct: 235 VVGCLVPELLA--LRGVDLGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAAC 292
Query: 166 QVVLMGLVEGFR---INGLPGVG---EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
Q VLMG E R I L VG G+ YPGG FDPL A D F E VKE+KN
Sbjct: 293 QAVLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVEQAVKEVKN 352
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM +M GFFVQA VT GP++N+LD + +P NN
Sbjct: 353 GRLAMLAMLGFFVQAAVTRVGPVQNVLDFVADPAHNN 389
>gi|193872610|gb|ACF23033.1| ST140, partial [Eutrema halophilum]
Length = 141
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 101/143 (70%), Gaps = 13/143 (9%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL----------WYGPDRVKYL 59
A+S+ +L + F G++ + A +V +G+ + TM + WYG DRVKYL
Sbjct: 2 AASTMALSSPAFAGKAVKISPAASEV--LGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59
Query: 60 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 119
GPFS + PSYLTGEFPG+YGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 GPFSGEPPSYLTGEFPGNYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 119
Query: 120 EKWLRVDFKEPVWFKAGAQIFSE 142
+ V F + VWFKAG+QIFSE
Sbjct: 120 AR-NGVKFGKAVWFKAGSQIFSE 141
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 121/212 (57%), Gaps = 9/212 (4%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR KYL A P+Y+ GE GDYG+D GL + + R EV+HGRWA
Sbjct: 65 WYGPDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGL-GNKGGVEKYRPYEVLHGRWA 123
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGF 165
MLG +G + PE L + K VW+ +GA + L + G PN V LAV+ F
Sbjct: 124 MLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLA--LAVI-F 180
Query: 166 QVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
+V + L+E +R G G D LYPGG+YFDPLGLA DP ELKVKEIKNGRLAM
Sbjct: 181 EVAVFFLIENYRYQQDGPWGTGLDPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAM 240
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+ GF VQ VT +GP N HL +P N
Sbjct: 241 MAFLGFVVQYFVTKEGPYANWSKHLADPFGYN 272
>gi|9719392|gb|AAF97781.1| chlorophyll a/b-binding protein [Picea glauca]
Length = 151
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 95/155 (61%), Gaps = 11/155 (7%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVK 57
MA A+A +SL L R N L + A+ TM +WYGPDR K
Sbjct: 1 MATASAIQISSLAGQTLL---RPQQNELVSKMGASQARITMRRTVRSAPESIWYGPDRPK 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPN 152
+L K V F E VWFKAG + G P
Sbjct: 118 LLAK-TGVKFGEAVWFKAGRRYSRREASTTWGTPT 151
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 103/162 (63%), Gaps = 10/162 (6%)
Query: 25 SRTTAN----ALKDVVPMGNA---KYTMG--NELWYGPDRVKYL-GPFSAQTPSYLTGEF 74
+RT A+ A + V MG K MG N WYGPDR K+L F A P YLTGE+
Sbjct: 86 ARTVADFRDLAQEAVCHMGQTSGNKALMGACNVEWYGPDRPKWLPDAFLAGVPDYLTGEY 145
Query: 75 PGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFK 134
PGDYGWD GLSADP+ FA R E++H RWAMLGALGC+ PEV+ + + EPVW+K
Sbjct: 146 PGDYGWDALGLSADPQNFANYREAELLHARWAMLGALGCVFPEVINSYYNGNIAEPVWWK 205
Query: 135 AGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGF 176
AGA + + +DYLG+ +HA SI+A+ G QVVLMG E
Sbjct: 206 AGALVLNGQSIDYLGSDKFIHASSIIAIAGAQVVLMGGAEAL 247
>gi|77799163|gb|ABB03724.1| putative chloroplast chlorophyll A-B binding protein type II
[Sorghum bicolor]
Length = 113
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 81/104 (77%), Positives = 90/104 (86%), Gaps = 3/104 (2%)
Query: 166 QVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
QVVLMG VEG+R+ G P +GEG D +YPGG FDPLGLADDP T AELKVKE+KNGRLAM
Sbjct: 12 QVVLMGFVEGYRVGGGP-LGEGLDKVYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAM 69
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG+
Sbjct: 70 FSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGN 113
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 131/233 (56%), Gaps = 10/233 (4%)
Query: 22 LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWD 81
+ + R +A K M A+ G +YG +RVK+LG + P++L G GD G+D
Sbjct: 4 IDRERPALDAEKARKEMERAE-ARGRSAFYGANRVKFLGDLEYEYPAHLDGTLCGDVGFD 62
Query: 82 TAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAG-AQIF 140
L+A E R R LE++HGRWAMLG +G PE L+++ + EPVW+K G A++
Sbjct: 63 PLNLAAKSEDLERYRELELLHGRWAMLGVVGAAVPETLDRFGVANLGEPVWWKVGAAKMN 122
Query: 141 SEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFR---INGLPGVG---EGNDLYP 192
S+ LDYLG ++ I + Q+VLMG E R IN L VG G+ YP
Sbjct: 123 SDIALDYLGFSGFHIAGGSGIAVIAACQLVLMGGPEYARYVGINSLEPVGVYLPGDKDYP 182
Query: 193 GGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
GG FDP +DD F + KV EIK+ RLAM + G +QAIVT +GP+ENL
Sbjct: 183 GGAPFDPFKFSDDAEEFEKQKVMEIKHCRLAMIAALGCAIQAIVTRQGPIENL 235
>gi|693924|gb|AAA80595.1| chlorophyll a/b binding protein, partial [Solanum tuberosum]
Length = 135
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/137 (57%), Positives = 97/137 (70%), Gaps = 12/137 (8%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLG 60
A+S+ +L + F GQ+ + + ++ GN + TM + WYGPDRVKYLG
Sbjct: 2 AASTMALSSPSFAGQAVKLSPSASEIT--GNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
PFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 121 KWLRVDFKEPVWFKAGA 137
+ V F E VWFKAG+
Sbjct: 120 R-NGVKFGEAVWFKAGS 135
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 128/226 (56%), Gaps = 14/226 (6%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYG R + GP +L GE GD G+D L DP AFAR R +E++H RWAMLG
Sbjct: 55 WYGASRPRLPGPLGGA--QHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAMLG 112
Query: 110 ALGCITPEVLEKWLR-VDFKEPVWFKAGA-QIFSEGGLDYLGNP--NLVHAQSILAVLGF 165
+GC+ PE+L LR V+ EPVW+K GA ++ S+ L++ G + Q I +
Sbjct: 113 FVGCMVPELLA--LRGVELGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAAC 170
Query: 166 QVVLMGLVEGFR---INGLPGVG---EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
Q VLMG E R I L VG G+ YPGG FDPL A D F + V+EIKN
Sbjct: 171 QAVLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIKN 230
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFV 265
GRLAM +M G FVQA VT KGP++N+++ + +P N + + +
Sbjct: 231 GRLAMVAMLGLFVQAAVTKKGPVQNVMEFVSDPAGENIFTNVARLL 276
>gi|302854487|ref|XP_002958751.1| hypothetical protein VOLCADRAFT_84624 [Volvox carteri f.
nagariensis]
gi|302854497|ref|XP_002958756.1| hypothetical protein VOLCADRAFT_78096 [Volvox carteri f.
nagariensis]
gi|300255926|gb|EFJ40207.1| hypothetical protein VOLCADRAFT_84624 [Volvox carteri f.
nagariensis]
gi|300255931|gb|EFJ40212.1| hypothetical protein VOLCADRAFT_78096 [Volvox carteri f.
nagariensis]
Length = 98
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 85/100 (85%), Gaps = 3/100 (3%)
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MGLVEG+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSMF
Sbjct: 1 MGLVEGYRVNGGP-AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 58
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGP+ENL DHL NP NNA+ +ATKF P +
Sbjct: 59 GFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTPSA 98
>gi|210162116|gb|ACJ09656.1| putative chloroplast light harvesting chlorophyll a/b binding
protein [Cupressus sempervirens]
Length = 169
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/170 (61%), Positives = 116/170 (68%), Gaps = 22/170 (12%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRV YL P S + PSYLTGEFPGDY WDTA L ADPE A+NR LEVIH R +MLG
Sbjct: 21 WYGPDRVLYLEP-SGEPPSYLTGEFPGDY-WDTARL-ADPET-AKNRELEVIHCR-SMLG 75
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ E R E VWF GAQI GLDYL P+LVHAQSILA+ QV+L
Sbjct: 76 ALGCV-----ELLARNGVFEAVWFN-GAQI--SVGLDYL--PSLVHAQSILAI-SCQVIL 124
Query: 170 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
MG VEG+RI P +G + +Y G FDPL LADDP FAELKV IKN
Sbjct: 125 MGAVEGYRIASGP-LGVTDPIYHGS--FDPL-LADDPDAFAELKV--IKN 168
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 117/204 (57%), Gaps = 11/204 (5%)
Query: 51 YGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA 110
YG RVK+LG + P++L G GD G+D GL D R R LE++H RWAMLG
Sbjct: 158 YGARRVKFLGDAEYEYPAHLDGSLCGDAGFDPLGLGKDD--LPRMRELELLHARWAMLGI 215
Query: 111 LGCITPEVLEKWLRVDFKEPVWFKAGA-QIFSEGGLDYLGNP--NLVHAQSILAVLGFQV 167
+G PE+LE++ D EPVW+K GA ++ S+ LDY G ++ I + QV
Sbjct: 216 VGVAVPELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAACQV 275
Query: 168 VLMGLVEGFR---INGLPGVG---EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
VLMG E R I+ L VG G+ YPGG FDP ++DD F + KV EIK+GR
Sbjct: 276 VLMGGPEYARYVGIDSLEPVGVYLPGDKDYPGGAPFDPFKISDDADEFEKQKVMEIKHGR 335
Query: 222 LAMFSMFGFFVQAIVTGKGPLENL 245
LAM +M G QA VT GP+ENL
Sbjct: 336 LAMIAMLGVAAQAFVTRAGPIENL 359
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 127/239 (53%), Gaps = 43/239 (17%)
Query: 41 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRA 97
AK +LW+ S Q+ SYL G PGDYG+D GLS DPE F
Sbjct: 48 AKQGADRQLWFA----------SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPSW 96
Query: 98 L---EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNL 153
L E+I+GR+AMLGA+G I PE+L K + + + WFK G I G DY +P
Sbjct: 97 LAYGEIINGRYAMLGAVGAIAPEILGKAGLIPPETALPWFKTGV-IPPAGTYDYWADPYT 155
Query: 154 VHAQSILAVLGFQVVLMGLVEGFRINGL--PGV--------------GEGNDLYPGGQYF 197
+ F++ LMG E R PG G GN +YPGG F
Sbjct: 156 LFV--------FELALMGFAEHRRFQDFQKPGCLSKQYFLGFEKYFEGSGNPIYPGGPLF 207
Query: 198 DPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+PLG D + +LK+KE+KNGRLAM ++ G+FVQA+VTG GP +NLLDHL +PV NN
Sbjct: 208 NPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLSDPVNNN 266
>gi|53793542|dbj|BAD52991.1| a/b-binding protein precursor-like [Oryza sativa Japonica Group]
Length = 98
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 83/100 (83%), Gaps = 3/100 (3%)
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMF
Sbjct: 1 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 58
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 59 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
>gi|222641394|gb|EEE69526.1| hypothetical protein OsJ_28989 [Oryza sativa Japonica Group]
Length = 225
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 95/141 (67%), Gaps = 10/141 (7%)
Query: 4 IMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
+MA A S+S++L G++R T ++ + G+ WYG DRV YLGP S
Sbjct: 7 VMARAAPSTSSAL-----FGEARIT---MRKTAAKPKPAASSGSP-WYGADRVLYLGPLS 57
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
+ PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 58 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-N 116
Query: 124 RVDFKEPVWFKAGAQIFSEGG 144
V F E VWFKAG+Q+ G
Sbjct: 117 GVKFGEAVWFKAGSQVLQGRG 137
>gi|22003726|gb|AAM88863.1|AF526508_1 A-B binding protein [Vicia faba]
Length = 136
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 85/117 (72%), Gaps = 9/117 (7%)
Query: 14 TSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPFSA 64
++++ + F G++ R ++ V +G +++TM +WYGPDR KYLGPFS
Sbjct: 1 SAIQQSAFTGKTDLRQGNEFIRKVGNLGQSRFTMRRTVKSAPESIWYGPDRPKYLGPFSE 60
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC PE+LEK
Sbjct: 61 QIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK 117
>gi|6440899|dbj|BAA78594.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 155
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 79/99 (79%), Gaps = 5/99 (5%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDR K+LGPF TPSYLTGEFPGDYGWDTAGLSA + + R +EVIHGRW MLG
Sbjct: 62 WYGPDRPKWLGPFFQNTPSYLTGEFPGDYGWDTAGLSATGD-LRKYRTIEVIHGRWPMLG 120
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYL 148
ALGC+ PE+ ++ D EPVWFKAGAQIFSEGGLDYL
Sbjct: 121 ALGCLVPEL----IKGDIAEPVWFKAGAQIFSEGGLDYL 155
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 134/269 (49%), Gaps = 43/269 (15%)
Query: 11 SSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYL 70
++ L A P G SR +A+ + K +LW+ S Q+ SYL
Sbjct: 17 AARQRLGARPSFGSSRKSASFVVRAEATPPVKQGADRQLWFA----------SKQSLSYL 66
Query: 71 TGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLR 124
G PGD+G+D GLS DPE F R L EVI+GR+AMLGA G I PE+
Sbjct: 67 DGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGL 125
Query: 125 VDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN--GL 181
+ + + WFK G I G +Y +P + F++ LMG E R
Sbjct: 126 IPPETALPWFKTGV-IPPAGTYNYWADPYTLFV--------FEMALMGFAEHRRFQDWAK 176
Query: 182 PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
PG G G+ YPGG F+PLG D + ELK+KEIKNGRLAM ++
Sbjct: 177 PGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAI 236
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANN 256
G+F+Q +VTG GP +NLLDHL +PV NN
Sbjct: 237 LGYFIQGLVTGVGPYQNLLDHLSDPVNNN 265
>gi|108709620|gb|ABF97415.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 118
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 83/123 (67%), Gaps = 11/123 (8%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKY 58
MAA+ +TS FLG + ++ V + M + +WYGPDR KY
Sbjct: 1 MAASALHQTTS-----FLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKY 55
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+
Sbjct: 56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEI 115
Query: 119 LEK 121
L +
Sbjct: 116 LSR 118
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/161 (52%), Positives = 105/161 (65%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA GCI PE K+ E VWFK GA + L+Y G +H
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKN--IH 59
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
++AV+ V++ G E +RI + G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 60 INLVVAVVAEVVLVGG-AEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA GCI PE K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 103/161 (63%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA GCI PE K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI + G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|16225450|gb|AAL15892.1|AF417304_1 putative chlorophyll-A-B-binding protein [Castanea sativa]
Length = 120
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 84/119 (70%), Gaps = 9/119 (7%)
Query: 12 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMG-------NELWYGPDRVKYLGPF 62
+S++++ + F GQ+ + + ++ V + TM +WYGPDR KYLGPF
Sbjct: 2 ASSTIQRSAFAGQTALKQSNELVRKVGSFAGGRVTMRRTVKSAPQSIWYGPDRPKYLGPF 61
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
S QTPSYLTGEFP DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SEQTPSYLTGEFPEDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 105/161 (65%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA GCI PE K+ E VWFK GA + L+Y G +
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI- 60
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+++ + +VVL+G E +RI + G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 61 --NLVVAVVTEVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 103/161 (63%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA GCI PE K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI + G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|302854499|ref|XP_002958757.1| hypothetical protein VOLCADRAFT_108301 [Volvox carteri f.
nagariensis]
gi|300255932|gb|EFJ40213.1| hypothetical protein VOLCADRAFT_108301 [Volvox carteri f.
nagariensis]
Length = 112
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/96 (76%), Positives = 80/96 (83%), Gaps = 3/96 (3%)
Query: 174 EGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
G+R+NG P GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFV
Sbjct: 19 HGYRVNGGPA-GEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV 76
Query: 233 QAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
QAIVTGKGP+ENL DHL NP NNA+ +ATKF P +
Sbjct: 77 QAIVTGKGPIENLNDHLANPAVNNAFAFATKFTPSA 112
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 130/256 (50%), Gaps = 43/256 (16%)
Query: 24 QSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTA 83
+S T+ A++ G +LW+ S Q+ SYL G PGDYG+D
Sbjct: 45 ESSRTSFAVRSQASSGKPVKQGDRQLWFA----------SKQSLSYLDGSLPGDYGFDPL 94
Query: 84 GLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV-WFKAG 136
GL DPE F L E+I+GR+AMLGA+G I PE+L K + + + WF+ G
Sbjct: 95 GL-MDPEGPGGFIEPGWLAYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPWFRTG 153
Query: 137 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV---------- 184
I G DY +P + ++ LMG E R+ PG
Sbjct: 154 V-IPPAGTYDYWADP--------FTLFVLEMALMGFAEHRRLQDYRYPGSMSKQYFLGFE 204
Query: 185 ----GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
G GN YPGG F+PLG D + ELK+KE+KNGRLAM ++ G+F+Q +VTG G
Sbjct: 205 KYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAIVGYFIQGLVTGVG 264
Query: 241 PLENLLDHLENPVANN 256
P +NLLDHL +PV NN
Sbjct: 265 PFQNLLDHLADPVNNN 280
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 103/161 (63%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA GCI PE K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI + G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF++A VTG+GP+ENL HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNN 156
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+ H RWAMLGA GCI PE K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI + G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 103/161 (63%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA GCI PE K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI + G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF+QA VTG+GP+E+L HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIQAYVTGQGPVESLASHLSDPFGNN 156
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA GCI PE K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI + G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF+QA V G+GP+ENL HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIQAYVAGQGPVENLASHLSDPFGNN 156
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 101/267 (37%), Positives = 136/267 (50%), Gaps = 52/267 (19%)
Query: 13 STSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTG 72
S S R T F +S+ ++N V G+ +LW+ D Q+ SYL G
Sbjct: 41 SQSSRRTSFTVRSQASSN---KPVKQGD------RQLWFASD----------QSLSYLDG 81
Query: 73 EFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLRVD 126
PGDYG+D GL DPE F L E+I+GR+AMLGA+G I PE+L K +
Sbjct: 82 SLPGDYGFDPLGL-MDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIP 140
Query: 127 FKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG 183
+ + WF+ G I G +Y +P + ++ LMG E R+ PG
Sbjct: 141 QETALPWFQTGV-IPPAGTYNYWADP--------FTLFVLEMALMGFAEHRRLQDYRNPG 191
Query: 184 V--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
G GN YPGG F+PLG D + ELK+KE+KNGRLAM ++ G
Sbjct: 192 SMGKQYFLGLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILG 251
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANN 256
+F+Q +VTG GP +NLLDHL +PV NN
Sbjct: 252 YFIQGLVTGVGPFQNLLDHLADPVHNN 278
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA GCI PE K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI + G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF+QA VTG+ P+ENL HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIQAYVTGQCPVENLASHLSDPFGNN 156
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+ H RWAMLGA GCI PE K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI + G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF+QA VTG+GP+ENL H+ +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHMSDPFGNN 156
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 121/217 (55%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S+Q+ SYL G PGDYG+D GLS DPE F R L E+I+GR+AMLGA G I P
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAP 117
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G I G Y + L VL ++ LMG E
Sbjct: 118 EILGKAGLIPAETALPWFQTGV-IPPAGTYTYWAD------NYTLFVL--EMALMGFAEH 168
Query: 176 FRINGL--PG--------------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R+ PG G GN YPGG +F+PLG D + ELK+KE+KN
Sbjct: 169 RRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKN 228
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F+Q +VTG GP +NLLDHL +PV NN
Sbjct: 229 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 104/161 (64%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA GCI PE K+ E VWFK GA + L+Y G +H
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKN--IH 59
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
++AV+ V++ G E +RI + G+ + L+ GG FDPLGLA DP FA LKVK
Sbjct: 60 INLVVAVVAEVVLVGG-AEYYRI--INGLDLEDKLHHGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 121/217 (55%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S+Q+ SYL G PGDYG+D GLS DPE F R L E+I+GR+AMLGA G I P
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAP 117
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G I G Y + L VL ++ LMG E
Sbjct: 118 EILGKAGLIPAETALPWFQTGV-IPPAGTYTYWAD------NYTLFVL--EMALMGFAEH 168
Query: 176 FRINGL--PG--------------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R+ PG G GN YPGG +F+PLG D + ELK+KE+KN
Sbjct: 169 RRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKN 228
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F+Q +VTG GP +NLLDHL +PV NN
Sbjct: 229 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GLS DPE F + L E+I+GR+AMLGA+G I P
Sbjct: 62 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G I G +Y + + F++ LMG E
Sbjct: 121 EILGKAGLIPQETALPWFRTGF-IPPAGTYNYWADSYTLFV--------FEMALMGFAEH 171
Query: 176 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G G YPGG +F+PLG D + +LK+KE+KN
Sbjct: 172 RRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKN 231
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+FVQA+VTG GP +NLLDHL +PV NN
Sbjct: 232 GRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNN 268
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GLS DPE F + L E+I+GR+AMLGA+G I P
Sbjct: 62 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G +F G + + F++ LMG E
Sbjct: 121 EILGKAGLIPQETALPWFRTG--VFPPAG-------TYNYWADSYTLFVFEMALMGFAEH 171
Query: 176 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G G YPGG +F+PLG D + +LK+KE+KN
Sbjct: 172 RRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKN 231
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+FVQA+VTG GP +NLLDHL +PV NN
Sbjct: 232 GRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNN 268
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 121/217 (55%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S+Q+ SYL G PGDYG+D GLS DPE F R L E+I+GR+AMLGA G I P
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAP 117
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G I G Y + L VL ++ LMG E
Sbjct: 118 EILGKAGLIPPETALPWFQTGV-IPPAGTYTYWAD------NYTLFVL--EMALMGFAEH 168
Query: 176 FRINGL--PG--------------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R+ PG G GN YPGG +F+PLG D + ELK+KE+KN
Sbjct: 169 RRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKN 228
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F+Q +VTG GP +NLLDHL +PV NN
Sbjct: 229 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 118/213 (55%), Gaps = 12/213 (5%)
Query: 51 YGPDRVKYL-GPFSAQTPSYLTGEFPGDYGWDTAGL-SADPEAFARNRALEVIHGRWAML 108
YGP R K+L F P +L G GD G+D GL S P R R LE++HGRWAML
Sbjct: 176 YGPTRRKFLPDGFGYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAML 235
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFS--EGGLDYLG--NPNLVHAQSILAVLG 164
G +G PE L ++ ++ EPVW+K GA + + LDYLG ++ + + +
Sbjct: 236 GVVGAAVPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVIAA 295
Query: 165 FQVVLMGLVEGFR---INGLPGVG---EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
Q+VLMG E R I+ L VG G+ YPGG FDP G++ D F KV E+K
Sbjct: 296 CQLVLMGGPEYARKVGIDSLVPVGVYLPGDRDYPGGAPFDPFGVSADAAVFERQKVAEMK 355
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLEN 251
+GRLAM +M G F QA TG GP+ENL + E
Sbjct: 356 HGRLAMVAMLGCFAQAWATGVGPVENLTETWEK 388
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S+Q+ SYL G PGDYG+D GLS DPE F R L E+I+GR+AMLGA G I P
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAP 117
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G I G Y + L VL ++ LMG E
Sbjct: 118 EILGKAGLIPAETALPWFQTGV-IPPAGTYTYWAD------NYTLFVL--EMALMGFAEH 168
Query: 176 FRINGL--PG--------------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R+ PG G GN YPGG +F+PLG D + ELK+KE+KN
Sbjct: 169 RRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKN 228
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F+Q +VTG GP +NLLDHL PV NN
Sbjct: 229 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLAGPVNNN 265
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GLS DPE F + L E+I+GR+AMLGA+G I P
Sbjct: 62 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G +F G + + F++ LMG E
Sbjct: 121 EILGKAGLIPQETALPWFRTG--VFPPAG-------TYNYWADSYTLFVFEMALMGFAEH 171
Query: 176 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G G YPGG +F+PLG D + +LK+KE+KN
Sbjct: 172 RRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKN 231
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+FVQA+VTG GP +NLLDHL +PV NN
Sbjct: 232 GRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNN 268
>gi|302844283|ref|XP_002953682.1| hypothetical protein VOLCADRAFT_106034 [Volvox carteri f.
nagariensis]
gi|300261091|gb|EFJ45306.1| hypothetical protein VOLCADRAFT_106034 [Volvox carteri f.
nagariensis]
Length = 143
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 78/99 (78%), Gaps = 1/99 (1%)
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
++LMGLVEG+R+NG P GEG D G+ FDPLGLADDP TF EL VKE KNGRLAMFS
Sbjct: 43 MILMGLVEGYRVNGSPA-GEGLDPLYHGESFDPLGLADDPDTFTELMVKETKNGRLAMFS 101
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFV 265
MFGFF+QAIVTG P+ENL DHL NP NNA+ +ATK V
Sbjct: 102 MFGFFMQAIVTGNDPIENLNDHLANPGVNNAFAFATKLV 140
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 133/265 (50%), Gaps = 45/265 (16%)
Query: 16 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFP 75
L + P SR +++ + K LW+ S Q+ +YL G P
Sbjct: 22 LGSRPLQSPSRKSSSFVVRAASTPPVKQGADRPLWFA----------SKQSLTYLDGSLP 71
Query: 76 GDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLRVDFKE 129
GDYG+D GLS DPE F R L EVI+GR+AMLGA+G I PE+L K + +
Sbjct: 72 GDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKLGLIPPET 130
Query: 130 PV-WFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV- 184
+ WFK G +F G +Y +P + F++ LMG E R PG
Sbjct: 131 ALPWFKTG--VFPPAGTYNYWADPYTLFV--------FEMALMGFAEHRRFQDWANPGSM 180
Query: 185 -------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 231
G G+ YPGG F+PLG D + +LK+KE+KNGRLAM ++ G+F
Sbjct: 181 GKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240
Query: 232 VQAIVTGKGPLENLLDHLENPVANN 256
Q VTG GPL+NLLDHL +PV NN
Sbjct: 241 AQGPVTGVGPLQNLLDHLADPVNNN 265
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GLS DPE F + L E+I+GR+AMLGA+G I P
Sbjct: 62 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G +F G + + F++ LMG E
Sbjct: 121 EILGKAGLIPQETALPWFRTG--VFPPAG-------TYNYWADSYTLFVFEMALMGFAEH 171
Query: 176 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G G YPGG +F+PLG D + +LK+KE+KN
Sbjct: 172 RRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKN 231
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+FVQA+VTG GP +NLLDHL +PV NN
Sbjct: 232 GRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNN 268
>gi|305855847|gb|ADM67764.1| putative Lhcb3 [Rhododendron rubropilosum]
gi|305855851|gb|ADM67766.1| putative Lhcb3 [Rhododendron kawakamii]
gi|305855855|gb|ADM67768.1| putative Lhcb3 [Rhododendron hyperythrum]
gi|305855857|gb|ADM67769.1| putative Lhcb3 [Rhododendron rubropunctatum]
gi|305855859|gb|ADM67770.1| putative Lhcb3 [Rhododendron morii]
gi|305855861|gb|ADM67771.1| putative Lhcb3 [Rhododendron pseudochrysanthum]
gi|338807938|gb|AEJ07693.1| putative Lhcb3 [Rhododendron chihsinianum]
gi|338807942|gb|AEJ07695.1| putative Lhcb3 [Rhododendron wiltonii]
Length = 66
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
VIHGRWAMLGALGCITPEVLEKWL+VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 60
Query: 160 LAVLGF 165
LAVLGF
Sbjct: 61 LAVLGF 66
>gi|305377034|dbj|BAJ15880.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 96
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/96 (70%), Positives = 78/96 (81%), Gaps = 1/96 (1%)
Query: 89 PEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYL 148
PE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYL
Sbjct: 1 PETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYL 59
Query: 149 GNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
GNP+L+HAQSILA+ QV+LMG VEG+RI G P V
Sbjct: 60 GNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPSV 95
>gi|169261108|gb|ACA52202.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 118
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 72/96 (75%), Gaps = 8/96 (8%)
Query: 26 RTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGL 85
R TA K V G+ WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGL
Sbjct: 22 RKTAGKAKPAVSSGSP--------WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGL 73
Query: 86 SADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
SADPE FA+NR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 74 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 109
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 138/274 (50%), Gaps = 54/274 (19%)
Query: 6 AAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQ 65
A T S S R + F+ ++ +T V GN +LW+ S Q
Sbjct: 24 ARPTQSPFVSSRKSSFVVRAASTPP-----VKQGN------RQLWFA----------SKQ 62
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVL 119
+ SYL G PGD+G+D GLS DPE F + L E+I+GR+AMLGA+G I PE+L
Sbjct: 63 SLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEIL 121
Query: 120 EKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
K + + + WF+ G I G Y +P + F++ LMG E R+
Sbjct: 122 GKAGLIPPETALPWFRTGV-IPPAGTYSYWADPYTLFV--------FEMALMGFAEHRRL 172
Query: 179 N--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRL 222
PG G G YPGG F+PLG D + +LK+KE+KNGRL
Sbjct: 173 QDWAKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRL 232
Query: 223 AMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
AM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 233 AMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNN 266
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA GCI PE K+ E VWFK A + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTRALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI + G+ + L+PGG FDPLGLA DP FA LKVK
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EIKNGRLAMFSMF FF++A VTG+GP+ENL HL +P NN
Sbjct: 116 EIKNGRLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNN 156
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 122/217 (56%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GLS DPE F R L EVI+GR+AMLGA+G I P
Sbjct: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAP 119
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF---------- 165
E L K + + + WF+ G I G +Y + N +A++GF
Sbjct: 120 EYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWAD-NYTLFVLEMALMGFAEHRRFQDWA 177
Query: 166 ------QVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
+ +GL +GF G GN YPGG +F+PLG D + ELK+KE+KN
Sbjct: 178 KPGSMGKQYFLGLEKGFG-------GSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKN 230
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F+Q +VTG GP +NLLDH+ +PV NN
Sbjct: 231 GRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 137/274 (50%), Gaps = 54/274 (19%)
Query: 6 AAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQ 65
A T S S R + F+ ++ +T V GN +LW+ S Q
Sbjct: 24 ARPTQSPFVSSRKSSFVVRAASTPP-----VKQGN------RQLWFA----------SKQ 62
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVL 119
+ SYL G PGD+G+D GLS DPE F + L E+I+GR+AMLGA+G I PE+L
Sbjct: 63 SLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEIL 121
Query: 120 EKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
K + + + WF+ G I G Y +P + F++ LMG E R
Sbjct: 122 GKAGLIPPETALPWFRTGV-IPPAGTYSYWADPYTLFV--------FEMALMGFAEHRRF 172
Query: 179 N--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRL 222
PG G G YPGG F+PLG D + +LK+KE+KNGRL
Sbjct: 173 QDWAKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRL 232
Query: 223 AMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
AM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 233 AMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNN 266
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 135/271 (49%), Gaps = 53/271 (19%)
Query: 9 TASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPS 68
+A S +S R PF+ ++ ++ A K +LW+ S Q+ S
Sbjct: 19 SAVSRSSARKAPFVVRASSSPPA----------KQGADRQLWFA----------SKQSLS 58
Query: 69 YLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKW 122
YL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I PE+ K
Sbjct: 59 YLDGTLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKM 117
Query: 123 LRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
+ + + WFK G I G +Y + + F + LMG E R+
Sbjct: 118 GIIPPETALPWFKTGV-IPPAGTYNYWADSYTLFV--------FNMALMGFAEHRRLQDW 168
Query: 182 --PG--------------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
PG G G+ YPGG F+PLG ELK+KEIKNGRLAM
Sbjct: 169 YNPGSMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAML 228
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
++ G+F+Q +VTG GP +NLLDHL +PV NN
Sbjct: 229 AILGYFIQGLVTGVGPFQNLLDHLADPVNNN 259
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 123/228 (53%), Gaps = 35/228 (15%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRW 105
G DR + S Q+ +YL G PGD+G+D GLS DPE F + L E+I+GR+
Sbjct: 50 GADRQLWFA--SKQSLTYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRF 106
Query: 106 AMLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG 164
AMLGA G I PE+L K + + + WF+ G I G DY +P +
Sbjct: 107 AMLGAAGAIAPEILGKAGLIPPETALPWFQTGV-IPPAGTYDYWADPYTLFV-------- 157
Query: 165 FQVVLMGLVEGFRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVT 208
F++ LMG E R PG G G+ YPGG F+PLG D +
Sbjct: 158 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS 217
Query: 209 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
ELK+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 218 MKELKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 265
>gi|305855829|gb|ADM67755.1| putative Lhcb3 [Pieris japonica var. taiwanensis]
gi|305855831|gb|ADM67756.1| putative Lhcb3 [Rhododendron ovatum]
gi|305855833|gb|ADM67757.1| putative Lhcb3 [Rhododendron ellipticum]
gi|305855835|gb|ADM67758.1| putative Lhcb3 [Rhododendron mariesii]
gi|305855837|gb|ADM67759.1| putative Lhcb3 [Rhododendron nakaharae]
gi|305855839|gb|ADM67760.1| putative Lhcb3 [Rhododendron noriakianum]
gi|305855841|gb|ADM67761.1| putative Lhcb3 [Rhododendron kanehirai]
gi|305855843|gb|ADM67762.1| putative Lhcb3 [Rhododendron simsii]
gi|305855845|gb|ADM67763.1| putative Lhcb3 [Rhododendron oldhamii]
gi|305855849|gb|ADM67765.1| putative Lhcb3 [Rhododendron breviperulatum]
gi|305855853|gb|ADM67767.1| putative Lhcb3 [Rhododendron formosanum]
gi|338807936|gb|AEJ07692.1| putative Lhcb3 [Rhododendron simsii]
gi|338807940|gb|AEJ07694.1| putative Lhcb3 [Rhododendron seniavinii]
gi|338807944|gb|AEJ07696.1| putative Lhcb3 [Rhododendron simsii]
gi|338807946|gb|AEJ07697.1| putative Lhcb3 [Rhododendron scabrum]
Length = 66
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/66 (96%), Positives = 66/66 (100%)
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
VIHGRWAMLGALGCITPEVLEKW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 60
Query: 160 LAVLGF 165
LAVLGF
Sbjct: 61 LAVLGF 66
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GLS DPE F + L E+I+GR+AMLGA+G I P
Sbjct: 62 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G +F G + + F++ LMG E
Sbjct: 121 EILGKAGLIPQETALPWFRTG--VFPPAG-------TYNYWADSYTLFVFEMALMGFAEH 171
Query: 176 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G G YPGG +F+PLG D + +LK+KE+KN
Sbjct: 172 RRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKN 231
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+FV+A+VTG GP +NLLDHL +PV NN
Sbjct: 232 GRLAMLAILGYFVRALVTGVGPYQNLLDHLADPVHNN 268
>gi|449527935|ref|XP_004170963.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like, partial [Cucumis sativus]
Length = 117
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 81/115 (70%), Gaps = 11/115 (9%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLG 60
A+S+ +L + GQ+ + ++ GNAK+TM WYGPDRVKYLG
Sbjct: 2 AASTMALSSPTLAGQAVKLSPNAPEI--QGNAKFTMRKTASKSVSSGSPWYGPDRVKYLG 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC++
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVS 114
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 100/154 (64%), Gaps = 6/154 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA G I PE L K+ E VWFK GA + L+Y G +
Sbjct: 2 QAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 59
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+LAV+ +VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVK
Sbjct: 60 INLVLAVIA-EVVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
EIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 116 EIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|169261106|gb|ACA52201.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata subsp.
hookeri]
Length = 119
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 70/93 (75%), Gaps = 8/93 (8%)
Query: 26 RTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGL 85
R TA K V G+ WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGL
Sbjct: 35 RKTAGKAKPAVSSGSP--------WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGL 86
Query: 86 SADPEAFARNRALEVIHGRWAMLGALGCITPEV 118
SADPE FA+NR LEVIH RWAMLGALGC+ PE+
Sbjct: 87 SADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S+Q+ +YL G PGDYG+D GLS DPE F R L E+I+GR+AMLGA G I P
Sbjct: 59 SSQSLTYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAP 117
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF---------- 165
E+L K + + + WF+ G I G Y + N +A++GF
Sbjct: 118 EILGKAGLIPAETALPWFQTGV-IPPAGTYSYWAD-NYTLFVLEMALMGFAEHRRLQDWY 175
Query: 166 ------QVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
+ +GL +GF G G YPGG +F+PLG + + ELK+KEIKN
Sbjct: 176 NPGSMGKQYFLGLEKGFS-------GSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIKN 228
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 229 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 265
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 117/216 (54%), Gaps = 31/216 (14%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPE---AFARNRAL---EVIHGRWAMLGALGCITP 116
S+Q+ SYL G PGDYG+D GLS DPE F R L E+I+GR+AMLGA G I P
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAP 117
Query: 117 EVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGF 176
E+L K + + + I G Y + L VL ++ LMG E
Sbjct: 118 EILGKAGLIPAETALPXXQTGVIPPAGTYTYWAD------NYTLFVL--EMALMGFAEHR 169
Query: 177 RINGL--PG--------------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNG 220
R+ PG G GN YPGG +F+PLG D + ELK+KE+KNG
Sbjct: 170 RLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNG 229
Query: 221 RLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
RLAM ++ G+F+Q +VTG GP +NLLDHL +PV NN
Sbjct: 230 RLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 138/275 (50%), Gaps = 46/275 (16%)
Query: 6 AAATASSSTSLRATPF-LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
AA S R+ P +G SR + +K P+ K +LW+ S
Sbjct: 313 AAEAVRQSFGARSLPSSIGSSRKGSFVVKAAAPV--KKGGANRQLWFA----------SK 360
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEV 118
Q+ SYL G PGD+G+D GLS DPE F L E+I+GR+AMLGA G I PE+
Sbjct: 361 QSLSYLDGSLPGDFGFDPLGLS-DPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEI 419
Query: 119 LEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
L K + + + WF+ G I G +Y + L V+ ++ MG E R
Sbjct: 420 LGKAGLIPAETALPWFQTGV-IPPAGTYNYWAD------NYTLFVM--EMAFMGFAEHRR 470
Query: 178 INGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
+ PG G G YPGG F+PLG D + ELK+KE+KNGR
Sbjct: 471 LQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGR 530
Query: 222 LAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LAM ++ G+F+QA+VTG GP +NLLDHL +PV NN
Sbjct: 531 LAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 565
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 137/275 (49%), Gaps = 44/275 (16%)
Query: 6 AAATASSSTSLRATPF-LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
AA S R+ P +G SR + +K + +LW+ S
Sbjct: 15 AAEAVRQSFGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQLWFA----------SK 64
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEV 118
Q+ SYL G PGD+G+D GLS DPE F R L E+I+GR+AMLGA G I PE+
Sbjct: 65 QSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 123
Query: 119 LEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF------------ 165
L K + + + WF+ G I G +Y + N +A +GF
Sbjct: 124 LGKAGLIPAETALPWFQTGV-IPPAGTYNYWAD-NYTLFVMEMAFMGFAEHRRFQDWYNP 181
Query: 166 ----QVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
+ +GL +G G G YPGG F+PLG D + ELK+KE+KNGR
Sbjct: 182 GSMGKQYFLGLEKGLG-------GSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGR 234
Query: 222 LAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LAM ++ G+F+QA+VTG GP +NLLDHL +PV NN
Sbjct: 235 LAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 269
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 138/275 (50%), Gaps = 46/275 (16%)
Query: 6 AAATASSSTSLRATPF-LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
AA S R+ P +G SR + +K P+ K +LW+ S
Sbjct: 297 AAEAVRQSFGARSLPSSIGSSRKGSFVVKAAAPV--KKGGANRQLWFA----------SK 344
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEV 118
Q+ SYL G PGD+G+D GLS DPE F L E+I+GR+AMLGA G I PE+
Sbjct: 345 QSLSYLDGSLPGDFGFDPLGLS-DPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEI 403
Query: 119 LEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
L K + + + WF+ G I G +Y + L V+ ++ MG E R
Sbjct: 404 LGKAGLIPAETALPWFQTGV-IPPAGTYNYWAD------NYTLFVM--EMAFMGFAEHRR 454
Query: 178 INGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
+ PG G G YPGG F+PLG D + ELK+KE+KNGR
Sbjct: 455 LQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGR 514
Query: 222 LAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LAM ++ G+F+QA+VTG GP +NLLDHL +PV NN
Sbjct: 515 LAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 549
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 137/275 (49%), Gaps = 44/275 (16%)
Query: 6 AAATASSSTSLRATPF-LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSA 64
AA S R+ P +G SR + +K + +LW+ S
Sbjct: 15 AAEAVRQSFGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQLWFA----------SK 64
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEV 118
Q+ SYL G PGD+G+D GLS DPE F R L E+I+GR+AMLGA G I PE+
Sbjct: 65 QSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 123
Query: 119 LEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF------------ 165
L K + + + WF+ G I G +Y + N +A +GF
Sbjct: 124 LGKAGLIPAETALPWFQTGV-IPPAGTYNYWAD-NYTLFVMEMAFMGFAEHRRFQDWYNP 181
Query: 166 ----QVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221
+ +GL +G G G YPGG F+PLG D + ELK+KE+KNGR
Sbjct: 182 GSMGKQYFLGLEKGLG-------GSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGR 234
Query: 222 LAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LAM ++ G+F+QA+VTG GP +NLLDHL +PV NN
Sbjct: 235 LAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 269
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 120/228 (52%), Gaps = 35/228 (15%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRW 105
G DR + S Q+ SYL G PGD+G+D GLS DPE F + L E+I+GR+
Sbjct: 52 GADRQLWFA--SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRY 108
Query: 106 AMLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG 164
AMLG G I PE+L K + + + WF+ G I G Y +P +
Sbjct: 109 AMLGVAGAIAPEILGKLGLIPPETALPWFQTGV-IPPAGTYSYWADPYTLFV-------- 159
Query: 165 FQVVLMGLVEGFRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVT 208
++ LMG E R PG G G+ YPGG F+PLG D +
Sbjct: 160 LEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKS 219
Query: 209 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
ELK+KE+KNGRLAM ++ GFF+Q +VTG GP +NLLDHL +PV NN
Sbjct: 220 MKELKLKEVKNGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNN 267
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 120/228 (52%), Gaps = 35/228 (15%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRW 105
G DR + S Q+ SYL G PGD+G+D GLS DPE F + L E+I+GR+
Sbjct: 52 GADRQLWFA--SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRY 108
Query: 106 AMLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG 164
AMLG G I PE+L K + + + WF+ G I G Y +P +
Sbjct: 109 AMLGVAGAIAPEILGKLGLIPPETALPWFQTGV-IPPAGTYSYWADPYTLFV-------- 159
Query: 165 FQVVLMGLVEGFRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVT 208
++ LMG E R PG G G+ YPGG F+PLG D +
Sbjct: 160 LEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDERS 219
Query: 209 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
ELK+KE+KNGRLAM ++ GFF+Q +VTG GP +NLLDHL +PV NN
Sbjct: 220 MKELKLKEVKNGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNN 267
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGD+G+D GLS DPE F + L EVI+GR+AMLGA G I P
Sbjct: 59 SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAP 117
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G I G +Y + L VL ++ LMG E
Sbjct: 118 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWAD------NYTLFVL--EMALMGFAEH 168
Query: 176 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G G+ YPGG F+PLG D + ELK+KEIKN
Sbjct: 169 RRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKN 228
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F+QA+VTG GP +NLLDHL +PV NN
Sbjct: 229 GRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
>gi|375152320|gb|AFA36618.1| chlorophyll a/b binding protein, partial [Lolium perenne]
Length = 91
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 77/93 (82%), Gaps = 3/93 (3%)
Query: 177 RINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI 235
RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAI
Sbjct: 1 RIAGGP-LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 58
Query: 236 VTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
VTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 59 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 91
>gi|209778997|gb|ACI87809.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 85
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 72/86 (83%), Gaps = 2/86 (2%)
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
+ EG D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 1 LAEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 59
Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
ENL DHL +P NNAW YAT FVPG
Sbjct: 60 ENLYDHLADPSTNNAWAYATNFVPGK 85
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGD+G+D GLS DPE F + L EVI+GR+AMLGA G I P
Sbjct: 59 SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAP 117
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G I G +Y + L VL ++ LMG E
Sbjct: 118 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWAD------NYTLFVL--EMALMGFAEH 168
Query: 176 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G G+ YPGG F+PLG D + ELK+KEIKN
Sbjct: 169 RRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKN 228
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F+QA+VTG GP +NLLDHL +PV NN
Sbjct: 229 GRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
>gi|449527137|ref|XP_004170569.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like,
partial [Cucumis sativus]
Length = 79
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 69/79 (87%), Gaps = 1/79 (1%)
Query: 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
+YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL
Sbjct: 2 IYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 60
Query: 250 ENPVANNAWVYATKFVPGS 268
+PV NNAW YAT FVPG
Sbjct: 61 TDPVNNNAWAYATNFVPGK 79
>gi|339716018|gb|AEJ88256.1| putative light harvesting chlorophyll a/b-binding protein [Wolffia
australiana]
Length = 92
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/94 (76%), Positives = 78/94 (82%), Gaps = 3/94 (3%)
Query: 176 FRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
+R+ G P +GE D LYPGG FDPL LA+DP FAELKVKEIKNGRLAMFSMFGFFVQA
Sbjct: 1 YRVAGGP-LGEVVDPLYPGGS-FDPLNLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 58
Query: 235 IVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
IVTGKGPLENL DHL +PV NNAW YAT FVPG+
Sbjct: 59 IVTGKGPLENLADHLADPVNNNAWAYATNFVPGN 92
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/276 (36%), Positives = 137/276 (49%), Gaps = 44/276 (15%)
Query: 5 MAAATASSSTSLRATPF-LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFS 63
AA S R+ P +G SR + +K + +LW+ S
Sbjct: 14 FAAEAVRQSFGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQLWFA----------S 63
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPE 117
Q+ SYL G PGD+G+D GLS DPE F R L E+I+GR+AMLGA G I PE
Sbjct: 64 KQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 122
Query: 118 VLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF----------- 165
+L K + + + WF+ G I G +Y + N +A +GF
Sbjct: 123 ILGKAGLIPAETALPWFQTGV-IPPAGTYNYWAD-NYTLFVMEMAFMGFAEHRRFQDWYN 180
Query: 166 -----QVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNG 220
+ +GL +G G G YPGG F+PLG D + ELK+KE+KNG
Sbjct: 181 PGSMGKQYFLGLEKGLG-------GSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNG 233
Query: 221 RLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
RLAM ++ G+F+QA+VTG GP +NLLDHL +PV NN
Sbjct: 234 RLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 269
>gi|212721622|ref|NP_001132387.1| light harvesting complex mesophyll7 [Zea mays]
gi|194694246|gb|ACF81207.1| unknown [Zea mays]
Length = 185
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 81/122 (66%), Gaps = 16/122 (13%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM------------GNELWYGPDRVK 57
ASS+ +L +T F G++ ++ G A+ TM WYGPDRV
Sbjct: 2 ASSTMALSSTAFAGKAVNVPSSSA----FGEARVTMRKTAAKAKPAAASGSPWYGPDRVL 57
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE
Sbjct: 58 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 118 VL 119
+L
Sbjct: 118 LL 119
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 60/69 (86%)
Query: 199 PLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAW 258
P LADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DH+ +PV NNAW
Sbjct: 116 PELLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAW 175
Query: 259 VYATKFVPG 267
YAT FVPG
Sbjct: 176 AYATNFVPG 184
>gi|308154410|gb|ADO15273.1| light harvesting complex from photosystem I type b [Oxytropis
splendens]
Length = 97
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 92 FARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 151
FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP
Sbjct: 1 FAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNP 59
Query: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
+LVHAQSILA+ QV+LMG VEG+RI G P
Sbjct: 60 SLVHAQSILAIWAVQVILMGAVEGYRIAGGP 90
>gi|351066141|gb|AEQ39045.1| putative light-harvesting complex II chlorophyll-a/b binding
protein [Wolffia arrhiza]
Length = 84
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 72/85 (84%), Gaps = 2/85 (2%)
Query: 185 GEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
GE D LYPGG FDPL LA+DP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 1 GEVTDPLYPGGS-FDPLNLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 59
Query: 244 NLLDHLENPVANNAWVYATKFVPGS 268
NL DHL +PV NNAW YAT FVPG+
Sbjct: 60 NLADHLADPVNNNAWAYATNFVPGN 84
>gi|302854495|ref|XP_002958755.1| hypothetical protein VOLCADRAFT_69853 [Volvox carteri f.
nagariensis]
gi|300255930|gb|EFJ40211.1| hypothetical protein VOLCADRAFT_69853 [Volvox carteri f.
nagariensis]
Length = 88
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 73/86 (84%), Gaps = 2/86 (2%)
Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
GEG D LYPG + FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 4 AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 62
Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
ENL DHL NP NNA+ +ATKF P +
Sbjct: 63 ENLNDHLANPAVNNAFAFATKFTPSA 88
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 99/158 (62%), Gaps = 8/158 (5%)
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 164
ML ALG + PE+L+ + V F EPVW+K G LDYLG P + Q ++ +
Sbjct: 1 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAI 60
Query: 165 FQVVLMGLVEGFRINGLPGVGE------GNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
Q +LM E R G+ + G+ YPGG FDPLGL+ DPV F +LKVKEIK
Sbjct: 61 CQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKEIK 120
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
NGRLAM + FGF++QA VTGKGP++NL++HL +P+ NN
Sbjct: 121 NGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNN 158
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 122/226 (53%), Gaps = 46/226 (20%)
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE-----------AFARNRALEVIHGRWA 106
Y+ S Q+ SYL G PGDYG+D GLS DPE A+A EVIHGRWA
Sbjct: 66 YMLGVSDQSLSYLDGTLPGDYGFDPLGLS-DPEGAGGFINPGWLAYA-----EVIHGRWA 119
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLG G PE ++ ++ D VWFK G I ++G D+ P A+
Sbjct: 120 MLGVAGATAPETMKGFIP-DSTAVVWFKNGI-IPAQGSYDFWAPPT--------ALFWVM 169
Query: 167 VVLMGLVE----------GFRI-NGLPGV-----GEGNDLYPGGQYFDPLGLADDPVTFA 210
V +M VE GFR L G+ G GN YPGG F+P+G+ + +
Sbjct: 170 VCMMNFVEINRLTEYANPGFRTKQSLAGLEKGMGGTGNPAYPGGS-FNPMGMGKNDMD-- 226
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+KVKEIKNGRLAM + FG VQAI+TG+GP++NL DH+ +P A+N
Sbjct: 227 AMKVKEIKNGRLAMMAFFGIMVQAIITGEGPVKNLTDHVTDPFAHN 272
>gi|169193|gb|AAA33700.1| Major Cab protein [Petunia x hybrida]
Length = 76
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/77 (85%), Positives = 67/77 (87%), Gaps = 1/77 (1%)
Query: 192 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLEN 251
PGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +
Sbjct: 1 PGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 59
Query: 252 PVANNAWVYATKFVPGS 268
PV NNAW YAT FVPG
Sbjct: 60 PVNNNAWSYATNFVPGK 76
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 107/200 (53%), Gaps = 12/200 (6%)
Query: 57 KYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITP 116
+ L P + P +LTG GD G+D L PE+ AR LE++H RWAML +G P
Sbjct: 178 RPLLPGISSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVVGVAVP 237
Query: 117 EVLEKWLRVD----FKEPVWFKAGAQIFSEGGLDY--LGNPNLVHAQSILAVLGFQVVLM 170
E L + EPVW+K GA + L+Y LG + Q + + Q VLM
Sbjct: 238 EALSIAGALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAVIAACQAVLM 297
Query: 171 GLVEGFR---INGLPGVG---EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
G E R I L VG G+ YPGG FDP GL+DD FA KV EI++GRLAM
Sbjct: 298 GGPEYARYVGIRSLEPVGVYLPGDANYPGGAPFDPFGLSDDADRFARQKVIEIEHGRLAM 357
Query: 225 FSMFGFFVQAIVTGKGPLEN 244
+M G F QAIVTG+GP+ N
Sbjct: 358 VAMLGCFAQAIVTGEGPVAN 377
>gi|308154406|gb|ADO15271.1| light harvesting complex from photosystem I type b [Oxytropis
campestris subsp. johannensis]
gi|308154408|gb|ADO15272.1| light harvesting complex from photosystem I type b [Oxytropis
maydelliana]
gi|308154412|gb|ADO15274.1| light harvesting complex from photosystem I type b [Oxytropis
arctobia]
Length = 96
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 74/90 (82%), Gaps = 1/90 (1%)
Query: 93 ARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPN 152
A+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 59
Query: 153 LVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
LVHAQSILA+ QV+LMG VEG+RI G P
Sbjct: 60 LVHAQSILAIWAVQVILMGAVEGYRIAGGP 89
>gi|361068309|gb|AEW08466.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
Length = 83
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
Query: 93 ARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPN 152
A+NR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPN
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLAK-TGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 59
Query: 153 LVHAQSILAVLGFQVVLMGLVEGF 176
L+HAQSILA+ QVVLMGL+EG+
Sbjct: 60 LIHAQSILAIWACQVVLMGLIEGY 83
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 106/189 (56%), Gaps = 8/189 (4%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PSYL G GD +D LS E RN LE++HGRWAML +G PE+L + ++
Sbjct: 225 PSYLDGTLAGDAQFDPLRLSDTEEKRRRNVELELLHGRWAMLAVVGVCVPEILSRSGALE 284
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLMGLVEGFR---INGL 181
EP+W+K G ++ ++YLG ++ A I+ + Q VLMG E R I L
Sbjct: 285 LSEPIWWKIGEKVLEGIDVNYLGIEGFHIAGASGIIGIAFCQAVLMGGPEYARYVGIESL 344
Query: 182 PGVG---EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
VG G+ YPGG FDP L+ D EL+V E+K+GRLAM +M G F QA VT
Sbjct: 345 EPVGVYLPGDTNYPGGGPFDPFNLSADAERDVELRVSEVKHGRLAMIAMLGVFAQAFVTR 404
Query: 239 KGPLENLLD 247
+GP+ N+L+
Sbjct: 405 EGPVANVLE 413
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 136/281 (48%), Gaps = 45/281 (16%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
+AS+ A + FLG +R A A AK+ + E DR +
Sbjct: 28 LASVSVPAVVCGKPAFAEKKFLG-ARVAAAARPQASKA--AKFVVKAE---KSDRQLFFS 81
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSA--------DPEAFARNRALEVIHGRWAMLGALG 112
+AQ SYL G PGD+G+D GL DP+ A + EVIH R+AMLG G
Sbjct: 82 DKAAQ--SYLDGSKPGDFGYDPLGLYKPEGAGGFIDPKWLAYS---EVIHCRYAMLGMAG 136
Query: 113 CITPEVLEKWLRVDFKEP-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
+ PE+L K + + VWFK G I SEG DY +P LA+ +VVLM
Sbjct: 137 MVAPEILGKLGLIPAETGLVWFKTGV-IPSEGQYDYWASP--------LALFWIEVVLMQ 187
Query: 172 LVEGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
E R PG G G+ YPGG F+ LG D + +LK+K
Sbjct: 188 FAELRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLK 247
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
E+KNGRLAM + GFF+QA+ TG+GP +NL DHL +P NN
Sbjct: 248 ELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNN 288
>gi|115769|sp|P12327.1|CB21_EUGGR RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|829262|emb|CAA29821.1| chlorophyll a/b protein (128 AA) [Euglena gracilis]
Length = 127
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 88/118 (74%), Gaps = 5/118 (4%)
Query: 153 LVHAQSILAVLGFQVVLMGLVEGFRI-NGLPG-VGEGND-LYPGGQYFDPLGLADDPVTF 209
L+HA+S+LA+L QV+LMG VEG+R N PG GE D LYPGG FDPLGLADDP TF
Sbjct: 5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGP-FDPLGLADDPDTF 63
Query: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWV-YATKFVP 266
ELKVKEIKNGRLAM M GF+ QAIVTG+GP+EN L HL++P A+N T+F P
Sbjct: 64 PELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 105/196 (53%), Gaps = 24/196 (12%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G PGD+G+D GL+ PE FAR + E+IH RWAML G + PE L
Sbjct: 55 PAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEALGLG---- 110
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W A + GG YLGNP V ++ +L + + + VE R G
Sbjct: 111 ----NWVSAQQWAATPGGQATYLGNP--VPWGTLPIILAIEFLAVAFVEAKR-------G 157
Query: 186 EGND----LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV-TGKG 240
E D YPGG FDPLG A DP E K+KE+KNGRLA+ + GF VQAI G G
Sbjct: 158 EEPDHEKRKYPGGP-FDPLGFAKDPKKLEEYKLKELKNGRLALLAFLGFSVQAIAYPGTG 216
Query: 241 PLENLLDHLENPVANN 256
PLENL HL NP ANN
Sbjct: 217 PLENLASHLSNPWANN 232
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 136/281 (48%), Gaps = 45/281 (16%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
+AS+ A + FLG +R A A AK+ + E DR +
Sbjct: 6 LASVSVPAVVCGKPAFAEKKFLG-ARVAAAARPQASKA--AKFVVKAE---KSDRQLFFS 59
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSA--------DPEAFARNRALEVIHGRWAMLGALG 112
+AQ SYL G PGD+G+D GL DP+ A + EVIH R+AMLG G
Sbjct: 60 DKAAQ--SYLDGSKPGDFGYDPLGLYKPEGAGGFIDPKWLAYS---EVIHCRYAMLGMAG 114
Query: 113 CITPEVLEKWLRVDFKEP-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
+ PE+L K + + VWFK G I SEG DY +P LA+ +VVLM
Sbjct: 115 MVAPEILGKLGLIPAETGLVWFKTGV-IPSEGQYDYWASP--------LALFWIEVVLMQ 165
Query: 172 LVEGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
E R PG G G+ YPGG F+ LG D + +LK+K
Sbjct: 166 FAELRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLK 225
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
E+KNGRLAM + GFF+QA+ TG+GP +NL DHL +P NN
Sbjct: 226 ELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNN 266
>gi|1262849|gb|AAB19041.1| type 1 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 95
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/72 (86%), Positives = 64/72 (88%)
Query: 197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
FDPLGLADDP FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NN
Sbjct: 24 FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 83
Query: 257 AWVYATKFVPGS 268
AW YAT FVPG
Sbjct: 84 AWAYATNFVPGK 95
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 119/222 (53%), Gaps = 35/222 (15%)
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGAL 111
YL S Q +YL G PGD+G+D G+S DPE F + L EVIHGRWAMLG
Sbjct: 63 YLMGVSDQNMAYLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAMLGVA 121
Query: 112 GCITPEVL-EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV-- 168
G + PE+L + L + VWF +GA I +G DY NP + + + ++ F +
Sbjct: 122 GIVAPEILGQAGLIPESTGLVWFTSGA-IPPQGTFDYWANPMTIFWVN-MCMMNFAEIKR 179
Query: 169 --------------LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKV 214
LMG +GF G GN YPGG+YF+ GL D A+++
Sbjct: 180 GQDYWYPGSQAEQPLMGWEKGF-------AGSGNPAYPGGKYFNFAGLGKD--DMAKMQK 230
Query: 215 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
KEIKNGRLAM + G VQA+VTG+GP +N+ DH+ +P N
Sbjct: 231 KEIKNGRLAMMAFLGCMVQAVVTGEGPWKNICDHVADPFGAN 272
>gi|383145055|gb|AFG54073.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145056|gb|AFG54074.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145057|gb|AFG54075.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145058|gb|AFG54076.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145059|gb|AFG54077.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145060|gb|AFG54078.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145061|gb|AFG54079.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145062|gb|AFG54080.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145063|gb|AFG54081.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145064|gb|AFG54082.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145065|gb|AFG54083.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145066|gb|AFG54084.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145067|gb|AFG54085.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145068|gb|AFG54086.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145069|gb|AFG54087.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145070|gb|AFG54088.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145071|gb|AFG54089.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145072|gb|AFG54090.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
Length = 83
Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/84 (76%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
Query: 93 ARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPN 152
A+NR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPN
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLAK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 59
Query: 153 LVHAQSILAVLGFQVVLMGLVEGF 176
L+HAQSILA+ QVVLMGL+EG+
Sbjct: 60 LIHAQSILAIWACQVVLMGLIEGY 83
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 126/255 (49%), Gaps = 44/255 (17%)
Query: 3 SIMAAATASSS-TSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGP 61
SI AATAS+ S R G +R + + T GN P+ + +
Sbjct: 114 SIALAATASTRGQSTRGVSTRGSTRGQSTR--------GQRSTRGN----APEEERLVWF 161
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
+A P +LTGEFPGD G+D GLS DP F R R EV HGR AMLG +GCI PE+
Sbjct: 162 PNATPPDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELF-- 219
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
F + WF S L LG LV Q I + ++ GF NG
Sbjct: 220 -----FSQGPWFD-----LSGFNLTRLG---LVALQVIAPLEYWRG-----NRGFSWNGD 261
Query: 182 PGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
G + YPG FDPL L DD E K+KEIKNGRLAM +M G VQ+ +TGK P
Sbjct: 262 DGPDQS---YPG---FDPLRLTDD-----ETKLKEIKNGRLAMTAMLGLEVQSHITGKSP 310
Query: 242 LENLLDHLENPVANN 256
L NL +HL NP + N
Sbjct: 311 LVNLSEHLSNPASVN 325
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 98/199 (49%), Gaps = 49/199 (24%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL------E 120
P YLTGE GD G+D AGL+ADP F R + EV H R +ML +GC+ PE+L +
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGNGAWFQ 787
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
W +VDF AV+ QVV +E +R NG
Sbjct: 788 IWDKVDFNR------------------------------FAVVALQVV--APLEYWRGNG 815
Query: 181 --LPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
L E D YPG FDPL L T K EIKNGRLAM MFG VQ+ VT
Sbjct: 816 GFLWNDEETVDQSYPG---FDPLNL-----TTEYTKEAEIKNGRLAMIGMFGLEVQSHVT 867
Query: 238 GKGPLENLLDHLENPVANN 256
GK P+ NL+DHL +P+ N
Sbjct: 868 GKSPITNLIDHLSHPLTAN 886
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 101/199 (50%), Gaps = 42/199 (21%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
+A+ P++LTGE+P D G+D L+ADP+ +AR R EV HGR AML +GCI PE+L K
Sbjct: 540 NAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK- 598
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF-QVVLMGLVEGFRINGL 181
WF+AG + GL LGF + + E +R G
Sbjct: 599 -------GAWFEAGDSV---DGLK----------------LGFITMAIAAPTEYWRGQG- 631
Query: 182 PGV----GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G GE + YPG FDPL L D + E+KNGRLA+ ++ G Q + T
Sbjct: 632 -GFNWQKGELDRSYPG---FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLAT 682
Query: 238 GKGPLENLLDHLENPVANN 256
G+ PL NL HL NP+ N
Sbjct: 683 GESPLANLSAHLANPIGAN 701
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 95/193 (49%), Gaps = 41/193 (21%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PS+L GE+ GD G+D AGL+ADP+ F R R EV HGR AML +G + P+ L K
Sbjct: 359 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK----- 413
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
+W++A +A L + G+ E R GV E
Sbjct: 414 ---GIWYEAAQ-----------------NAGIGLKEVAIFTAAYGVFEVAR-----GVKE 448
Query: 187 GND---LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
+D +YPG FDPL L D K EIKNGRLA+ ++ GF VQ V G PL
Sbjct: 449 NSDPTTIYPG---FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLA 500
Query: 244 NLLDHLENPVANN 256
NL +HL+ P+ N
Sbjct: 501 NLAEHLQQPLQRN 513
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 76/155 (49%), Gaps = 37/155 (23%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
+A+ P++LTGE+P D G+D L+ADP+ +AR R EV HGR AML +GCI PE+L K
Sbjct: 914 NAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK- 972
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF-QVVLMGLVEGFRINGL 181
WF+AG + GL LGF + + E +R G
Sbjct: 973 -------GAWFEAGDSV---DGLK----------------LGFITMAIAAPTEYWRGQG- 1005
Query: 182 PGV----GEGNDLYPGGQYFDPLGLADDPVTFAEL 212
G GE + YPG FDPL L D AE+
Sbjct: 1006 -GFNWQKGELDRSYPG---FDPLNLTTDYTRAAEV 1036
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 95 NRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLV 154
+ E+ +GR AM+G G LE V K P+ +D+L +P
Sbjct: 842 TKEAEIKNGRLAMIGMFG------LEVQSHVTGKSPI----------TNLIDHLSHPLTA 885
Query: 155 HAQSILAVLGFQVVLM---GLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAE 211
+ + L+ QV + G +G YP + FDPL LA DP +A
Sbjct: 886 NIGTNLSQPWPQVAMFASSGHKDGLWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYAR 945
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
++V E+ +GRLAM M G V ++ GKG
Sbjct: 946 MRVAEVFHGRLAMLCMVGCIVPELL-GKG 973
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 121/233 (51%), Gaps = 26/233 (11%)
Query: 54 DRVK---YLGPFSAQTPSYLTGEFPGDYGWDTAGL--SADPEAFARNRAL---EVIHGRW 105
DR K Y+G S + +YL G PGD+G+D GL + F + L EVIH RW
Sbjct: 26 DRSKDQLYVGA-SQSSLAYLDGTLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARW 84
Query: 106 AMLGALGCITPEVL-EKWLRVDFKEPVWFKAGAQIFSEGGLD-YLGNPNLVHAQSILAVL 163
AMLGA GCI PEVL L D WF++G I G D Y +P + I+A+
Sbjct: 85 AMLGAAGCIAPEVLGAAGLIPDATNIKWFESGV-IPPAGSYDGYWADPYTIFFVEIVAM- 142
Query: 164 GFQVVLMGLVEGFRINGLPGV-----------GEGNDLYPGGQYFDPLGLADDPVTFAEL 212
Q + ++ FR G G G G+ YPGG +F+ L EL
Sbjct: 143 --QFAELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKEL 200
Query: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFV 265
K+KEIKNGRLAM +M G+ QA++TGKGP +NL++HL +PV NN K V
Sbjct: 201 KLKEIKNGRLAMLAMLGYGAQAVLTGKGPFQNLVEHLADPVNNNILTNFGKLV 253
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 95/150 (63%), Gaps = 6/150 (4%)
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G + PE K+ E VWFK GA + L Y GN + ++AV+ +
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNS--IPINLVVAVIA-E 57
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 58 VVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAMFS 114
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
MF FF+QA VTG+GP+ENL HL +P NN
Sbjct: 115 MFAFFIQAYVTGEGPVENLAKHLSDPFGNN 144
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 117/223 (52%), Gaps = 24/223 (10%)
Query: 54 DRVK---YLGPFSAQTPSYLTGEFPGDYGWDTAGL--SADPEAFARNRAL---EVIHGRW 105
DR K Y+G S + +YL G PGD+G+D GL + F + L EVIH RW
Sbjct: 39 DRSKDQLYVGA-SQSSLAYLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARW 97
Query: 106 AMLGALGCITPEVL-EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG 164
AMLGA GCI PEVL L D WF++G + Y +P + I+A+
Sbjct: 98 AMLGAAGCIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAM-- 155
Query: 165 FQVVLMGLVEGFRINGLPG-----------VGEGNDLYPGGQYFDPLGLADDPVTFAELK 213
Q + ++ FR G G G G+ YPGG +F+ L ELK
Sbjct: 156 -QFAELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELK 214
Query: 214 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+KEIKNGRLAM +M G+ QA++TGKGP +NL++HL +PV NN
Sbjct: 215 LKEIKNGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPVNNN 257
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 109/217 (50%), Gaps = 69/217 (31%)
Query: 45 MGNEL--WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALE 99
+G+EL WYGPDR +L ++ P YL GE PGDYG+D GLS PE F++ +A E
Sbjct: 58 IGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYE 117
Query: 100 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 159
L+HA+
Sbjct: 118 -----------------------------------------------------LIHAR-- 122
Query: 160 LAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKN
Sbjct: 123 ------WVVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKN 173
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAMFSM GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 174 GRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNN 210
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 119/232 (51%), Gaps = 24/232 (10%)
Query: 54 DRVK---YLGPFSAQTPSYLTGEFPGDYGWDTAGL--SADPEAFARNRAL---EVIHGRW 105
DR K Y+G S + +YL G PGD+G+D GL + F + L EVIH RW
Sbjct: 39 DRSKDQLYVGA-SQSSLAYLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARW 97
Query: 106 AMLGALGCITPEVL-EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG 164
AMLGA GCI PEVL L D WF++G + Y +P + I+A+
Sbjct: 98 AMLGAAGCIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAM-- 155
Query: 165 FQVVLMGLVEGFRINGLPGV-----------GEGNDLYPGGQYFDPLGLADDPVTFAELK 213
Q + ++ FR G G G G+ YPGG +F+ L ELK
Sbjct: 156 -QFAELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELK 214
Query: 214 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFV 265
+KEIKNGRLAM +M G+ QA++TGKGP +NL++HL +PV NN K V
Sbjct: 215 LKEIKNGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPVNNNILTNFGKLV 266
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 112/217 (51%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARN------RALEVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GLS DP+ R E+I+GR+AMLGA G I P
Sbjct: 65 SEQSLSYLDGSLPGDYGFDPLGLS-DPQGAGGFIDPNWLRYAEIINGRFAMLGAAGAIAP 123
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+ K + + + WF+ G I G Y +P + ++ LMG E
Sbjct: 124 EIFGKIGLIPQETAIPWFQTGV-IPPLGQYSYWADPYTLFV--------LEMALMGFAEH 174
Query: 176 FRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G G+ YPGG F+ LG D + +LKVKE+KN
Sbjct: 175 RRAQDYYKPGSMGKQYFLGFEKVLGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEVKN 234
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F+QAI TG GP +NLLDHL +P NN
Sbjct: 235 GRLAMLAVLGYFIQAIFTGVGPFQNLLDHLSDPANNN 271
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 126/258 (48%), Gaps = 31/258 (12%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
+ ++AAA A + + + F G + TT A ++ +M E G R
Sbjct: 7 CSQLVAAAVAPTLAGTQKSKFFGSAITTPGAAFS----NGSRVSMSAEWLPGQPR----- 57
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
P+YL G PGD+G+D GL P+ R + E+IH RWAML GC+ PE L
Sbjct: 58 ------PAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLIPEALG 111
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 179
W +A + GG YLG P V ++ ++ + V + VE RI
Sbjct: 112 LG--------NWVEAQQWAATPGGQATYLGTP--VPWGTLPVIIAIEFVAIAFVESRRI- 160
Query: 180 GLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV-TG 238
G+P + YPGG FDPLG + DP F E K+KE+KNGRLA+ + GF QA G
Sbjct: 161 GVPSAEKRK--YPGGA-FDPLGFSKDPKKFEEFKLKEVKNGRLALLAFLGFCAQAAAYPG 217
Query: 239 KGPLENLLDHLENPVANN 256
GPL+NL HL +P NN
Sbjct: 218 TGPLQNLATHLADPWHNN 235
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 119/224 (53%), Gaps = 26/224 (11%)
Query: 54 DRVK---YLGPFSAQTPSYLTGEFPGDYGWDTAGL--SADPEAFARNRAL---EVIHGRW 105
DR K Y+G S + +YL G PGD+G+D GL + F + L EVIHGRW
Sbjct: 40 DRSKDQLYVGA-SQSSLAYLDGTLPGDFGFDPLGLLDPVNSGGFVEPKWLQYSEVIHGRW 98
Query: 106 AMLGALGCITPEVL-EKWLRVDFKEPVWFKAGAQIFSEGGLD-YLGNPNLVHAQSILAVL 163
AMLGA GCI PE+L L + VW+++G I G D Y +P + I+A+
Sbjct: 99 AMLGAAGCIAPEILGAAGLIPEKTNIVWYESGV-IPPAGSYDGYWADPYTIFFIEIVAM- 156
Query: 164 GFQVVLMGLVEGFRINGLPG-----------VGEGNDLYPGGQYFDPLGLADDPVTFAEL 212
Q + ++ FR G G G G+ YPGG +F+ L EL
Sbjct: 157 --QFAELRRLQDFRYPGSMGKQYFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKEL 214
Query: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
K+KEIKNGRLAM +M G+ QA +T +GP +NLLDHL +PV NN
Sbjct: 215 KLKEIKNGRLAMLAMLGYGAQATLTREGPFQNLLDHLADPVNNN 258
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 134/273 (49%), Gaps = 43/273 (15%)
Query: 2 ASIMAAATASSSTSLRATPFLGQSRTT------ANALKDVVPMGNAKYTMGNELWYGPDR 55
+S +AA SS +S + +G ++ + K + P+G+ + + + PDR
Sbjct: 7 SSTIAAVAFSSPSSQKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAV-SAVAADPDR 65
Query: 56 VKYLGPFSAQTP-SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCI 114
+ F TP +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G
Sbjct: 66 PLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIF 122
Query: 115 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
PE L K + V P W+ AG Q +Y + + ++VL+G E
Sbjct: 123 IPEFLTK-IGV-LNTPSWYTAGEQ-------EYFTDTTTLFV--------IELVLIGWAE 165
Query: 175 GFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKN 219
G R + PG G D+ YPGG +FDPLG P EL+ KEIKN
Sbjct: 166 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKN 225
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
GRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 226 GRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 116/217 (53%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GL DPE F + L E+I+GR+AMLGA G I P
Sbjct: 10 SKQSLSYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAP 68
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
EVL + + + + WF++G I G Y +P L VL ++ LMG E
Sbjct: 69 EVLGRIGLIPQETAIPWFQSGV-IPPVGNYSYWADP------YTLFVL--EMALMGFAEH 119
Query: 176 FRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G GN YPGG F+ LG + ELKVKE+KN
Sbjct: 120 RRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKN 179
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F QAI TG GP +NLLDHL +PV NN
Sbjct: 180 GRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNN 216
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 107/201 (53%), Gaps = 19/201 (9%)
Query: 57 KYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITP 116
K P + P++L G PGD+G+D GL+ DP + AR R EV++GRWAMLG G + P
Sbjct: 39 KLWAPGLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGVAGMLAP 98
Query: 117 EVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGF 176
E++ + W A + G YLGN ++LAV F + + + G
Sbjct: 99 ELV--------GQGTWLSAQDWAVTGGKPTYLGNELPYGFGTVLAVEFFCLSWVEISRGL 150
Query: 177 RINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
+ + +YPGG FDPLG D V KVKE++NGRLAM + G + Q I
Sbjct: 151 EKDPM------KRIYPGGA-FDPLGFGKDEVN----KVKELRNGRLAMVAFVGMWCQGIH 199
Query: 237 TGKGPLENLLDHLENPVANNA 257
G GP+ NL+DHL +P+ NNA
Sbjct: 200 VGGGPVSNLMDHLADPLHNNA 220
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 116/217 (53%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GL DPE F + L E+I+GR+AMLGA G I P
Sbjct: 10 SKQSLSYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAP 68
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
EVL + + + + WF++G I G Y +P L VL ++ LMG E
Sbjct: 69 EVLGRIGLIPQETAIPWFQSGV-IPPVGNYSYWADP------YTLFVL--EMALMGFAEH 119
Query: 176 FRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G GN YPGG F+ LG + ELKVKE+KN
Sbjct: 120 RRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKN 179
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F QAI TG GP +NLLDHL +PV NN
Sbjct: 180 GRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNN 216
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 114/217 (52%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GL DPE F + L E+I+GR+AMLGA G I P
Sbjct: 28 SKQSLSYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAP 86
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
EVL + + + + WF++G I G Y +P + ++ LMG E
Sbjct: 87 EVLGRIGLIPQETAIPWFQSGV-IPPVGNYSYWADPYTLFV--------LEMALMGFAEH 137
Query: 176 FRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G GN YPGG F+ LG + ELKVKE+KN
Sbjct: 138 RRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKN 197
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F QAI TG GP +NLLDHL +PV NN
Sbjct: 198 GRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNN 234
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 102/184 (55%), Gaps = 21/184 (11%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGP RV +L + P+YLTG+ GDYG+D GL DPE + RA E+IH RWA
Sbjct: 64 WYGPSRVLFLPSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHARWA 123
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQ--SILAVLG 164
ML A G I PE L D K WF+ GA++ + G L+Y P + + + A++
Sbjct: 124 MLAAAGMIIPEGLAA-NGADIKGATWFETGAEMLNGGTLNYFAVPWAIVSNPLPLFAIVA 182
Query: 165 FQVVLMGLVEGFRINGL------PGVG-------EGND-LYPGGQYFDPLGLADDPVTFA 210
+V LMG E +R G PGVG +G D L+PGG FDPLGLADDP F
Sbjct: 183 VEVGLMGAAENYRRTGTGPKGYSPGVGNFESSVFDGLDSLHPGGP-FDPLGLADDPEVFQ 241
Query: 211 ELKV 214
ELKV
Sbjct: 242 ELKV 245
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 99/162 (61%), Gaps = 5/162 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWA+L A G + P K+ V E +W+K GA + + Y G ++
Sbjct: 35 QAYELIHARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKTGALLLEGDSIKYFGATVPIN 94
Query: 156 AQSILAVLGFQVVLMGLVEGFR-INGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKV 214
+ A + +V L+G E +R N P + + L+PGG FDPLGLA DP FA LKV
Sbjct: 95 ---LAAAVISEVNLVGGSEYYRSTNKSPLGSDLDRLHPGGA-FDPLGLAKDPDQFALLKV 150
Query: 215 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
KEI NGRLAMFSM GFFV+A VTG+GP+ENL HL +P NN
Sbjct: 151 KEIMNGRLAMFSMLGFFVKAYVTGEGPVENLAAHLSDPFGNN 192
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 116/222 (52%), Gaps = 38/222 (17%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGL----SADPEAFARNRAL---EVIHGRWAMLGALGCIT 115
+A + SYL G PGD+G+D GL S F R L E++H RWAMLGA GC+
Sbjct: 7 TASSLSYLDGTLPGDFGFDPLGLFDPSSGGSAGFLSQRWLHTAELMHARWAMLGAAGCLA 66
Query: 116 PEVLEKWLRVDFKEP--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVL-GFQVVLMGL 172
PE L +V K +WFK G + G DY G P L VL Q+V+MG+
Sbjct: 67 PEYLAHE-KVIPKATGLLWFKTGFLPQASAGFDY-GLP--------LGVLFAVQMVMMGV 116
Query: 173 VEGFR-----------INGLPGVGE-------GNDLYPGGQYFDPLGLADDPVTFAELKV 214
EG R N L G+ + G+ YPGG F+PLGL + P E++
Sbjct: 117 AEGLRGAEYIAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQ 176
Query: 215 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
EI++GRLAM + G+ QA+VTG+GP +N HLENP NN
Sbjct: 177 AEIRHGRLAMLACLGYAAQAVVTGRGPYDNWNRHLENPEENN 218
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 105/206 (50%), Gaps = 32/206 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G GD+G+D GL DP+ E++H R+AM G G + ++L R D
Sbjct: 12 PAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLLRASGRTD 71
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 184
PVWF+AGA F + ++ V Q++LMG VE R + PG
Sbjct: 72 I--PVWFEAGATKF-----------DFADTTTLFVV---QLILMGFVETKRWMDIVKPGS 115
Query: 185 GEGNDL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 230
D YPGG F+PLG A+DP L+ KEIKNGRLAM +M GF
Sbjct: 116 QAAEDSFFGFEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRLAMVAMVGF 175
Query: 231 FVQAIVTGKGPLENLLDHLENPVANN 256
VQA VT GP+ENLL HL +PV N
Sbjct: 176 MVQAYVTKTGPIENLLTHLSDPVHNT 201
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 113/216 (52%), Gaps = 36/216 (16%)
Query: 53 PDRVKYLGPFSAQTPS-YLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 111
PDR + F TP +L G PGD+G+D GL++DPE+ N+ E++H RWAMLGA
Sbjct: 63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 119
Query: 112 GCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
G PE+L K + + P W+ AG Q + ++ V ++VL+G
Sbjct: 120 GIFIPELLTK-IGI-LNTPSWYTAGEQEY------------FTDTTTLFIV---ELVLIG 162
Query: 172 LVEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKE 216
EG R + PG G D+ YPGG +FDPLG P EL+ KE
Sbjct: 163 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKE 222
Query: 217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
IKNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 223 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 113/207 (54%), Gaps = 33/207 (15%)
Query: 73 EFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLRVD 126
PGDYG+D GLS DPE F R L E+I+GR+AMLGA G I PE+L K +
Sbjct: 14 SLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 127 FKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG 183
+ + WF+ G I G Y + L VL ++ LMG E R+ PG
Sbjct: 73 AETALPWFQTGV-IPPAGTYTYWAD------NYTLFVL--EMALMGFAEHRRLQDWYNPG 123
Query: 184 --------------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
G GN YPGG +F+PLG D + ELK+KE+KNGRLAM ++ G
Sbjct: 124 SMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 183
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANN 256
+F+Q +VTG GP +NLLDHL +PV NN
Sbjct: 184 YFIQGLVTGVGPYQNLLDHLADPVNNN 210
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/255 (39%), Positives = 126/255 (49%), Gaps = 44/255 (17%)
Query: 3 SIMAAATASSS-TSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGP 61
SI AATAS+ S R G +R + + T G+ P+ + +
Sbjct: 114 SIALAATASTRGQSTRGVSTRGSTRGQSTR--------GQRSTRGS----APEEERLVWF 161
Query: 62 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121
+A P +LTGEFPGD G+D GLS DP F R R EV HGR AMLG +GCI PE+
Sbjct: 162 PNATPPDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPELF-- 219
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
F + WF S L LG LV Q I + ++ GF NG
Sbjct: 220 -----FSQGPWFD-----LSSFNLTRLG---LVALQVIAPLEYWRG-----NRGFSWNGD 261
Query: 182 PGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
G + YPG FDPL L D+ E K+KEIKNGRLAM +M G VQ+ +TGK P
Sbjct: 262 DGPDQS---YPG---FDPLRLTDE-----ETKLKEIKNGRLAMTAMLGLEVQSHITGKSP 310
Query: 242 LENLLDHLENPVANN 256
L NL +HL NP + N
Sbjct: 311 LVNLSEHLSNPASVN 325
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 98/199 (49%), Gaps = 49/199 (24%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL------E 120
P YLTGE GD G+D AGL+ADP F R + EV H R +ML +GC+ PE+L +
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGNGAWFQ 787
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
W +VDF AV+ QVV +E +R NG
Sbjct: 788 IWDKVDFNR------------------------------FAVVALQVV--APLEYWRGNG 815
Query: 181 --LPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
L E D YPG FDPL L T K EIKNGRLAM MFG VQ+ VT
Sbjct: 816 GFLWNDEETIDQSYPG---FDPLNL-----TTEYTKEAEIKNGRLAMIGMFGLEVQSHVT 867
Query: 238 GKGPLENLLDHLENPVANN 256
GK P+ NL+DHL +P+ N
Sbjct: 868 GKSPITNLIDHLSHPLTAN 886
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 97/193 (50%), Gaps = 41/193 (21%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PS+LTGE+ GD G+D AGL+ADP+ F R R EV HGR AML +G + P+ L K
Sbjct: 359 PSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIVGALVPDYLGKG---- 414
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
+W++A +A L + G+ E R GV E
Sbjct: 415 ----IWYEAAQ-----------------NAGIGLKEVAIFTAAYGVFEVAR-----GVKE 448
Query: 187 GND---LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
+D +YPG FDPL L D K EIKNGRLA+ ++ GF VQ V G PL
Sbjct: 449 NSDPTTIYPG---FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLA 500
Query: 244 NLLDHLENPVANN 256
NL DHL+ P+ +N
Sbjct: 501 NLADHLQQPLQHN 513
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 101/199 (50%), Gaps = 42/199 (21%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
+A+ P++LTGE+P D G+D L+ADP+ +AR R EV HGR AML +GCI PE+L K
Sbjct: 540 NAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGKG 599
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF-QVVLMGLVEGFRINGL 181
WF+AG + GL LGF + + E +R G
Sbjct: 600 --------AWFEAGDSV---DGLK----------------LGFITMAIAAPTEYWRGQG- 631
Query: 182 PGV----GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G G+ + YPG FDPL L D + E+KNGRLA+ ++ G Q + T
Sbjct: 632 -GFNWQKGDLDRSYPG---FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLAT 682
Query: 238 GKGPLENLLDHLENPVANN 256
G+ PL NL HL NP+ N
Sbjct: 683 GESPLANLSAHLANPIGAN 701
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 101/199 (50%), Gaps = 42/199 (21%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
+A+ P++LTGE+P D G+D L+ADP+ +AR R EV HGR AML +GCI PE+L K
Sbjct: 914 NAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGKG 973
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF-QVVLMGLVEGFRINGL 181
WF+AG + GL LGF + + E +R G
Sbjct: 974 --------AWFEAGDSV---DGLK----------------LGFITMAIAAPTEYWRGQG- 1005
Query: 182 PGV----GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G G+ + YPG FDPL L D + E+KNGRLA+ ++ G Q + T
Sbjct: 1006 -GFNWQKGDLDRSYPG---FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLAT 1056
Query: 238 GKGPLENLLDHLENPVANN 256
G+ PL NL HL NP+ N
Sbjct: 1057 GESPLANLTAHLANPLGAN 1075
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 119/222 (53%), Gaps = 35/222 (15%)
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGAL 111
YL S Q +YL G PGD+G+D G+S DPE F + L EVIHGRWAMLG
Sbjct: 86 YLMGVSDQNMTYLDGTLPGDFGFDPLGMS-DPEGQGGFVNPQWLAYSEVIHGRWAMLGVA 144
Query: 112 GCITPEVLEKWLRVDFKEP-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV-- 168
G + PEVL + VWFK+GA I +G DY +P + +++ ++ F V
Sbjct: 145 GVVAPEVLGGMGIIPADTGLVWFKSGA-IPPQGTFDYWADPTTIFWVNMV-LMNFAEVKR 202
Query: 169 --------------LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKV 214
LMG +GF +G P YPGG+YF+ L A+++
Sbjct: 203 GQDYWYPGSQGETPLMGWEKGFAGSGAPA-------YPGGKYFNFANLGK--TDMAKMQK 253
Query: 215 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
KEIKNGRLAM + G VQA+ TG+GP +N++DH+ +P ANN
Sbjct: 254 KEIKNGRLAMMAFLGIAVQAVATGEGPFKNIVDHISDPFANN 295
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 132/272 (48%), Gaps = 45/272 (16%)
Query: 5 MAAATASSSTSL--------RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRV 56
MA +ASSST+ RA+ FLG + + L +A+ + PDR
Sbjct: 1 MALVSASSSTTAVAALPGAARASSFLGGAGRSGRLLLRQAESSSARASFAVRA-AAPDRP 59
Query: 57 KYLGPFSAQTPS-YLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
+ F TP +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G
Sbjct: 60 IW---FPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFI 116
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PE L K + + P W+ AG Q + ++ + +++L+G EG
Sbjct: 117 PEFLTK-IGI-LNTPSWYTAGEQQY------------FTDTTTLFII---ELILIGWAEG 159
Query: 176 FRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNG 220
R + PG G D+ YPGG +FDPLG P EL+ KEIKNG
Sbjct: 160 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNG 219
Query: 221 RLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
RLAM ++ G + QA TG GP++NL HL +P
Sbjct: 220 RLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 251
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 116/219 (52%), Gaps = 38/219 (17%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S+Q+ SYL G PGDYG+D GLS DP F L E+I+GR+AMLGA G I P
Sbjct: 65 SSQSLSYLDGTLPGDYGFDPLGLS-DPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAP 123
Query: 117 EVLEKWLRVDFKEP--VWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLV 173
E+ K + + +E VWFK G +F G +Y +P + ++ LMG
Sbjct: 124 EIFGK-IGIIPQETAVVWFKTG--VFPPAGTYNYWADP--------YTLFFLEMALMGFA 172
Query: 174 EGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEI 217
E R PG G G+ YPGG F+P G D + LK+KE+
Sbjct: 173 EHRRAQDFYKPGSMGKQYFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEV 231
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
KNGRLAM ++ G+F+QA TG GP +NLLDHL +P ANN
Sbjct: 232 KNGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANN 270
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 108/201 (53%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GLS+DPE+ N E++H RWAMLGA G PE L K + +
Sbjct: 61 PEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLGAAGIFIPEFLTK-IGI- 118
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG Q +Y + ++ L V+ +++L+G EG R + G
Sbjct: 119 LNTPSWYTAGEQ-------EYFTD------KTTLFVV--ELILIGWAEGRRWADIIKPGS 163
Query: 187 -------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 164 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAW 223
Query: 232 VQAIVTGKGPLENLLDHLENP 252
Q I TG GP++NL HL +P
Sbjct: 224 FQHIYTGTGPIDNLFAHLADP 244
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 114/218 (52%), Gaps = 36/218 (16%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S+Q+ SYL G PGDYG+D GLS DP F L E+I+GR+AMLGA G I P
Sbjct: 65 SSQSLSYLDGTLPGDYGFDPLGLS-DPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAP 123
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
E+ K + + V WFK G +F G +Y +P + ++ LMG E
Sbjct: 124 EIFGKIGIIPQQTAVVWFKTG--VFPPAGTYNYWADP--------YTLFFLEMALMGFAE 173
Query: 175 GFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
R PG G G+ YPGG F+P G D + LK+KE+K
Sbjct: 174 HRRAQDYYKPGSMGKQYFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEVK 232
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
NGRLAM ++ G+F+QA TG GP +NLLDHL +P ANN
Sbjct: 233 NGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANN 270
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 113/215 (52%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GLS+DP++ N E++H RWAMLGA G
Sbjct: 50 PDRPIWFP--GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 107
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K + + P W+ AG Q +Y + ++ L V+ +++L+G
Sbjct: 108 IFIPEFLTK-IGI-LNTPSWYTAGEQ-------EYFTD------KTTLFVV--ELILIGW 150
Query: 173 VEGFRINGLPGVGE-------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + G G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 151 AEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 113/215 (52%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GLS+DP++ N E++H RWAMLGA G
Sbjct: 50 PDRPIWFP--GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 107
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K + + P W+ AG Q +Y + ++ L V+ +++L+G
Sbjct: 108 IFIPEFLTK-IGI-LNTPSWYTAGEQ-------EYFTD------KTTLFVV--ELILIGW 150
Query: 173 VEGFRINGLPGVGE-------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + G G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 151 AEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 102/174 (58%), Gaps = 9/174 (5%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR +L ++ P YL GE PGDYG+D GLS PE FA+ +A E+IH RWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 132
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + L+Y G ++ + +
Sbjct: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA---E 189
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNG 220
VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNG
Sbjct: 190 VVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNG 240
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 97/154 (62%), Gaps = 6/154 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA G I PE L K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVK
Sbjct: 62 LVLAVVA---EVVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
EIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 116 EIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 113/215 (52%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GLS+DP++ N E++H RWAMLGA G
Sbjct: 50 PDRPIWFP--GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLGAAG 107
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K + + P W+ AG Q +Y + ++ L V+ +++L+G
Sbjct: 108 IFIPEFLTK-IGI-LNTPSWYTAGEQ-------EYFTD------KTTLFVV--ELILIGW 150
Query: 173 VEGFRINGLPGVGE-------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + G G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 151 AEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 108/204 (52%), Gaps = 36/204 (17%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G GDYG+D GL DPE+ E++H R+AMLG G + ++L RV
Sbjct: 67 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLL----RVT 122
Query: 127 --FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
K PVWF+AGA + + Q+++ V Q++LMG E R G
Sbjct: 123 GLSKIPVWFEAGAVKY-----------EFTNTQTLIIV---QLLLMGFAETKRYMDFIGP 168
Query: 185 G----EGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
G EG+ YPGG +PLGLA D E K+KEIKNGRLAM ++
Sbjct: 169 GSQAKEGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAIL 228
Query: 229 GFFVQAIVTGKGPLENLLDHLENP 252
G FVQA VT GP++NL++HL NP
Sbjct: 229 GIFVQASVTHVGPIDNLVEHLSNP 252
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 96/154 (62%), Gaps = 6/154 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA G I PE L K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVK
Sbjct: 62 LVLAVVA---EVVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
EIKNGRLAMF M GFF+QA VTG+GP+ENL HL
Sbjct: 116 EIKNGRLAMFXMLGFFIQAYVTGEGPVENLAKHL 149
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 103/194 (53%), Gaps = 15/194 (7%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G GDYG+D GL DPE+ E++H R+AMLG G + ++L +
Sbjct: 48 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 107
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV-------EGFRIN 179
PVW++AGA F D+ L+ Q +L M V EG
Sbjct: 108 L--PVWYEAGAVKF-----DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFF 160
Query: 180 GLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
GL EG + YPGG +PLGLA D + K+KEIKNGRLAM +M GFFVQA VT
Sbjct: 161 GLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTH 220
Query: 239 KGPLENLLDHLENP 252
GP++NL++HL NP
Sbjct: 221 TGPIDNLVEHLSNP 234
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 108/201 (53%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GLS+DP++ N E++H RWAMLGA G PE L K + +
Sbjct: 61 PEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTK-IGI- 118
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG Q +Y + ++ L V+ +++L+G EG R + G
Sbjct: 119 LNTPSWYTAGEQ-------EYFTD------KTTLFVV--ELILIGWAEGRRWADIIKPGS 163
Query: 187 -------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 164 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAW 223
Query: 232 VQAIVTGKGPLENLLDHLENP 252
Q I TG GP++NL HL +P
Sbjct: 224 FQHIYTGTGPIDNLFAHLADP 244
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 103/194 (53%), Gaps = 15/194 (7%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G GDYG+D GL DPE+ E++H R+AMLG G + ++L +
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV-------EGFRIN 179
PVW++AGA F D+ L+ Q +L M V EG
Sbjct: 116 L--PVWYEAGAVKF-----DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFF 168
Query: 180 GLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
GL EG + YPGG +PLGLA D + K+KEIKNGRLAM +M GFFVQA VT
Sbjct: 169 GLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTH 228
Query: 239 KGPLENLLDHLENP 252
GP++NL++HL NP
Sbjct: 229 TGPIDNLVEHLSNP 242
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 96/154 (62%), Gaps = 6/154 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA G I PE L K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI G+ + L+PGG FDPLGLA DP A LKVK
Sbjct: 62 LVLAVVA---EVVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
EIKNGRLAMF M GFF+QA VTG+GP+ENL HL
Sbjct: 116 EIKNGRLAMFGMLGFFIQAYVTGEGPVENLAKHL 149
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 110/224 (49%), Gaps = 44/224 (19%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE E++H RWAMLG G
Sbjct: 52 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSG 109
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
+ PE+LEK V+ W++AG Q +Y +P + Q+ LMG
Sbjct: 110 ILIPELLEKMGYVENYS--WYEAGTQ-------EYFADPT--------TLFIVQLALMGW 152
Query: 173 VEGFRI-------------------NGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAEL 212
VEG R N P VG YPGG +FDP+ P L
Sbjct: 153 VEGRRWADLVNPGSVDIEPKLPNRPNPKPDVG-----YPGGLWFDPMMWGRGSPEPVMVL 207
Query: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+ KEIKNGRLAM + GF+ QAI TG+GP+ENL+ HL +P N
Sbjct: 208 RTKEIKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCN 251
>gi|89574390|gb|ABD77412.1| chloroplast chlorophyll a/b-binding protein [Zingiber officinale]
Length = 130
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 81/104 (77%), Gaps = 4/104 (3%)
Query: 111 LGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLM 170
LGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLM
Sbjct: 20 LGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLM 78
Query: 171 GLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELK 213
G VEG+R+ G P +GE D LYPGG F+PLGLADDP FAE +
Sbjct: 79 GAVEGYRVAGGP-LGEVVDPLYPGGS-FEPLGLADDPEAFAEAE 120
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 103/194 (53%), Gaps = 15/194 (7%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G GDYG+D GL DPE+ E++H R+AMLG G + ++L +
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV-------EGFRIN 179
PVW++AGA F D+ L+ Q +L M V EG
Sbjct: 116 L--PVWYEAGAVKF-----DFACTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFF 168
Query: 180 GLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
GL EG + YPGG +PLGLA D + K+KEIKNGRLAM +M GFFVQA VT
Sbjct: 169 GLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTH 228
Query: 239 KGPLENLLDHLENP 252
GP++NL++HL NP
Sbjct: 229 TGPIDNLVEHLSNP 242
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 118/240 (49%), Gaps = 44/240 (18%)
Query: 41 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRA 97
AK +LW+ S Q+ SYL G PGD+G+D GLS DPE F R
Sbjct: 42 AKQGADRQLWFA----------SKQSLSYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRW 90
Query: 98 L---EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNL 153
L EV +GR AM+G +G + PE+L K V + + WF+ G I G Y +P
Sbjct: 91 LAYGEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGV-IPPAGTYTYWADPYT 149
Query: 154 VHAQSILAVLGFQVVLMGLVEGFRING--LPG--------------VGEGNDLYPGGQYF 197
+ F++ L+G E R PG G G YPGG F
Sbjct: 150 LFV--------FELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLF 201
Query: 198 DPLGL-ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+PLG ELK+KEIKNGRLAM + GF VQA+ TG GP++NLLDHL +PV NN
Sbjct: 202 NPLGFGTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNN 261
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 103/194 (53%), Gaps = 15/194 (7%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G GDYG+D GL DPE+ E++H R+AMLG G + ++L +
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV-------EGFRIN 179
PVW++AGA F D+ L+ Q +L M V EG
Sbjct: 116 L--PVWYEAGAVKF-----DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFF 168
Query: 180 GLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G+ EG + YPGG +PLGLA D + K+KEIKNGRLAM +M GFFVQA VT
Sbjct: 169 GIEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTH 228
Query: 239 KGPLENLLDHLENP 252
GP++NL++HL NP
Sbjct: 229 TGPIDNLVEHLSNP 242
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 140/301 (46%), Gaps = 71/301 (23%)
Query: 5 MAAATASSSTSLRATP-----------------------FLGQSRTTANALKDVVPMGNA 41
MAA T SS T++RA F+ ++ A A K+ P
Sbjct: 1 MAAITTSSVTAVRAVKGARATFGSRAAFAAPSAKASKARFVCRAEGEAEAPKEEAPKAVV 60
Query: 42 KYTMGNELWYGPDRVK---YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARN 95
K +R K Y+ S Q +YL G PGD+G+D G+S DPE F
Sbjct: 61 KK----------ERKKDDLYMMGVSDQNMAYLDGTLPGDFGFDPLGMS-DPEGAGGFVNP 109
Query: 96 RAL---EVIHGRWAMLGALGCITPEVLEKWLRV-DFKEPVWFKAGAQIFSEGGLDYLGNP 151
+ L EVIHGRWAMLG G + PE+L + + VWF +GA I +G DY NP
Sbjct: 110 QWLAYSEVIHGRWAMLGVAGIVAPEILGGMGVIPESTGLVWFTSGA-IPPQGTFDYWANP 168
Query: 152 NLVHAQSILAVLGFQVV----------------LMGLVEGFRINGLPGVGEGNDLYPGGQ 195
+ + + ++ F + L+G +GF G GN YPGG+
Sbjct: 169 MTIFWVN-MCMMNFAEIKRGQDYWFPGSQAETPLLGWEKGFG-------GSGNPTYPGGK 220
Query: 196 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVAN 255
+F+P L D A ++ KE+KNGRLAM + G VQA VTG+GP +N+ DH+ +P
Sbjct: 221 WFNPFNLGKD--DMASMQKKEVKNGRLAMMAFLGCMVQAAVTGEGPWKNICDHVADPFGA 278
Query: 256 N 256
N
Sbjct: 279 N 279
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 103/201 (51%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GLS+DPE+ N E++H RWAMLGA G PE L K L +
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTK-LGI- 58
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG- 185
P W+ AG Q + ++ V ++V +G EG R + G
Sbjct: 59 LNTPSWYTAGEQEY------------FTDTTTLFIV---ELVFIGWAEGRRWADILNPGC 103
Query: 186 ------------EGNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 104 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAW 163
Query: 232 VQAIVTGKGPLENLLDHLENP 252
Q I TG GP++NL HL +P
Sbjct: 164 FQHIYTGTGPIDNLFAHLADP 184
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 108/215 (50%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G
Sbjct: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAG 119
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K L + P W+ AG Q + ++ V ++V +G
Sbjct: 120 IFIPEFLTK-LGI-LNTPSWYTAGEQEY------------FTDTTTLFIV---ELVFIGW 162
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 163 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 122/256 (47%), Gaps = 50/256 (19%)
Query: 30 NALKDVVPMGNAKYTMGNELWY-----GPDRVKYLGPFSAQT-------------PSYLT 71
++ K+ PMG +K +G +L P RV+ A P +L
Sbjct: 18 SSQKNGSPMGTSKAFLGRKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLD 77
Query: 72 GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV 131
G PGD+G+D GLS+DPE+ N E++H RWAMLGA G PE L K + + P
Sbjct: 78 GSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTK-IGI-LNTPS 135
Query: 132 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGVGE--- 186
W+ AG Q + ++ V +++ +G EG R + PG
Sbjct: 136 WYTAGEQEY------------FTDTTTLFIV---ELIFIGWAEGRRWADILNPGCVNTDP 180
Query: 187 --------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G + Q I
Sbjct: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIY 240
Query: 237 TGKGPLENLLDHLENP 252
TG GP++NL HL +P
Sbjct: 241 TGTGPIDNLFAHLADP 256
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 109/215 (50%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GLS+DPE+ N E++H RWAMLGA G
Sbjct: 61 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAG 118
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K + + P W+ AG Q + ++ V +++ +G
Sbjct: 119 IFIPEFLTK-IGI-LNTPSWYTAGEQEY------------FTDTTTLFIV---ELIFIGW 161
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 162 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEI 221
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 222 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 256
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 108/215 (50%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GLS+DPE+ N E++H RWAMLGA G
Sbjct: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 119
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K + + P W+ AG Q + ++ V +++ +G
Sbjct: 120 IFIPEFLTK-IGI-LNTPSWYTAGEQEY------------FTDTTTLFIV---ELIFIGW 162
Query: 173 VEGFRINGLPGVGE-------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + G G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 163 AEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEI 222
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 108/208 (51%), Gaps = 36/208 (17%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G PGDYG+D GL +P E++H R+AM G G + +++ RV
Sbjct: 62 PPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILGTDLI----RVS 117
Query: 127 --FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR----ING 180
PVWF+AGA F D+ + A+ Q++LMG VE R +N
Sbjct: 118 GISNLPVWFEAGATKF-----DF---------ANTTALFFVQLLLMGFVETKRYMDIVNP 163
Query: 181 LPGVGEGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
EG L YPGG F+P+GLA D E+K+KEIKNGRLAM +M
Sbjct: 164 GSQAEEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMVAML 223
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANN 256
GFFVQA VT GP++NLL HL +P NN
Sbjct: 224 GFFVQASVTHVGPIDNLLIHLSDPFNNN 251
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 128/279 (45%), Gaps = 41/279 (14%)
Query: 1 MASIMAAATASSSTSLRAT-----PFLGQS--RTTANALKDVVPMGNAKYTMGNELWYGP 53
MAS + AA +S ++LR P G S RT + + + + G
Sbjct: 1 MASTVTAANSSHGSALRTRTASPRPVAGWSCRRTLSTPAHHHHARSSPRARVVAVRAAGT 60
Query: 54 DRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC 113
R +L P YL G PGD+G+D GL +PEA E++H R+AM G G
Sbjct: 61 QRATWLP--GLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGI 118
Query: 114 ITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV 173
+ ++L D PVWF+AGA F D+ + A+ Q+ LMG
Sbjct: 119 LFTDLLRVSGNSDL--PVWFEAGAAKF-----DF---------ANTTALFFVQLFLMGFA 162
Query: 174 EGFRINGLPGVG----EGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEI 217
E R G EG + YPGG F+PLGLA D + K+KEI
Sbjct: 163 ETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEI 222
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
KNGRLAM +M GF VQA VT GP++NLL HL +P N
Sbjct: 223 KNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKN 261
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GLS+DP++ N E++H RWAMLGA G PE L K + +
Sbjct: 61 PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTK-IGI- 118
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG Q +Y + ++ L V+ +++L+G EG R + G
Sbjct: 119 LNTPSWYTAGEQ-------EYFTD------KTTLFVV--ELILIGWAEGRRWADIIKPGS 163
Query: 187 -------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRL M ++ G +
Sbjct: 164 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLTMLAVMGAW 223
Query: 232 VQAIVTGKGPLENLLDHLENP 252
Q I TG GP++NL HL +P
Sbjct: 224 FQHIYTGTGPIDNLFAHLADP 244
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 115/218 (52%), Gaps = 34/218 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPE-------AFARNRALEVIHGRWAMLGALGCIT 115
S Q+ SYLTG P DYG+D GL DPE + A + EVIH RWAMLGA GCI
Sbjct: 29 SDQSLSYLTGALPADYGFDPLGL-LDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIA 87
Query: 116 PEVLEKW--LRVDFKEPVWFKAG----AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
PE+L + E +WFK+G A ++ + LD ++ + V+ Q
Sbjct: 88 PEILATAGVIPQTPDEVIWFKSGVIPPAGVYDKYWLD-------PYSLFFIEVILVQFAE 140
Query: 170 MGLVEGFRINGLPGV-----------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
+ + FR G G G G+ YPGGQ+F+ L + ELK KE+K
Sbjct: 141 LRRWQDFRNPGSQGKQYFLGLEEVLKGSGDPSYPGGQFFNLFNLGKSDLK--ELKTKELK 198
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
NGRLAM ++FG+ QA++T +GP +NL DHL +P +N
Sbjct: 199 NGRLAMLAVFGYGAQAVITAEGPFKNLTDHLSDPTGHN 236
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 108/204 (52%), Gaps = 36/204 (17%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G GDYG+D GL DPE+ E++H R+AMLG G + ++L RV
Sbjct: 14 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLL----RVT 69
Query: 127 --FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR------- 177
K PVWF+AGA + + Q+++ V Q++LMG E R
Sbjct: 70 GLSKIPVWFEAGAVKY-----------EFTNTQTLIIV---QLLLMGFAETKRYMDFISP 115
Query: 178 --------INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM ++
Sbjct: 116 GSQAKEGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAIL 175
Query: 229 GFFVQAIVTGKGPLENLLDHLENP 252
G FVQA VT GP++NL++HL NP
Sbjct: 176 GIFVQASVTHVGPIDNLVEHLSNP 199
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 113/219 (51%), Gaps = 34/219 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE+ E+IHGRWAML A G
Sbjct: 54 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
+ PE LE+ +D WF AG + +Y +P + Q++LMG
Sbjct: 112 ILIPEWLERLGFIDNFN--WFDAGTR-------EYFADPTTLFV--------VQLILMGW 154
Query: 173 VEGFRINGL--PGVGEGN-----------DL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
+EG R + PG + + D+ YPGG +FDP P ++ KEI
Sbjct: 155 IEGRRWADMIKPGCVDIDPKLPHKTKPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEI 214
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
KNGRLAM + GF+ QAI TG+GP++NL+ H+ +P N
Sbjct: 215 KNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCN 253
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 135/266 (50%), Gaps = 39/266 (14%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
MA++ A+ AS+ L F+GQ+ + P+ + WY
Sbjct: 1 MAAV-ASIAASNVAVLARKAFVGQAVKASAKPAGAKPVSTVVRADLGKKWYT-------- 51
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
A+ P+YL G PGDYG+D + +PE + E+ +GRWAM+G G + + L
Sbjct: 52 --GAKPPAYLDGSMPGDYGYDPLRMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALT 109
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
++ D P W++AGA + D Q+++A+ ++ + VEGFRI+
Sbjct: 110 QFGISDL--PDWYEAGAVAQASSPFDL---------QTLIAI---EIFVFATVEGFRIST 155
Query: 181 LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
G+ PG + D +G+ D P ++++KEIKNGRLAMF+ GF Q V G G
Sbjct: 156 WKKTGK-----PG--FLDIMGM-DSP----DMRLKEIKNGRLAMFAFVGFVAQYFVNGMG 203
Query: 241 PLENLLDHLENPVANNAWVYATKFVP 266
P+E LL+HLENP NN V++T++ P
Sbjct: 204 PVEGLLNHLENPQQNN--VFSTEYAP 227
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 111/205 (54%), Gaps = 24/205 (11%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
++TP+YL + PG YG+D L DP + E++H R+AM G + PEVL+ +
Sbjct: 42 SKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVAGILIPEVLKAFG 100
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
V+ PVW++AG + + N + A I A F V + + F+ G G
Sbjct: 101 AVNL--PVWYEAGKYAQESSPIPF----NTLIALEIFA---FNFVEIKRWQDFKKPGSQG 151
Query: 184 ------------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 231
G G + YPGG FDPLGL+ P + +K++EIKNGRLAM + GF
Sbjct: 152 EEGSFVGLEGFFKGTGENGYPGG-VFDPLGLSKGP-GYEAMKLREIKNGRLAMLAFIGFA 209
Query: 232 VQAIVTGKGPLENLLDHLENPVANN 256
Q + TGKGP+ENLLDHL NP+ANN
Sbjct: 210 SQYLATGKGPIENLLDHLSNPLANN 234
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 109/226 (48%), Gaps = 46/226 (20%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 111
GPDR + + P +L G PGD+G+D GL +DPE E++H RWAML A
Sbjct: 56 GPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAA 113
Query: 112 GCITPEVLEKW-LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLM 170
G + PEVLEKW D+ W AGA+ DY +P + Q+ LM
Sbjct: 114 GILVPEVLEKWGFMEDYS---WIDAGAR-------DYFADPWTLFVS--------QMALM 155
Query: 171 GLVEGFRI-------------------NGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFA 210
G EG R N +P VG YPGG +FD P
Sbjct: 156 GWAEGRRWADYLNPGCVAVEPRLPNRRNPVPDVG-----YPGGLWFDWGNWGRGSPEPVM 210
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF+ QA+ TG+GP++NLL HL +P N
Sbjct: 211 VLRTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCN 256
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 96/154 (62%), Gaps = 6/154 (3%)
Query: 96 RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVH 155
+A E+IH RWAMLGA G I PE L K+ E VWFK GA + L+Y G ++
Sbjct: 2 QAFELIHARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 156 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 215
+ +VVL+G E +RI + + L+PGG FDPLGLA DP A LKVK
Sbjct: 62 LVLAVVA---EVVLLGGAEYYRITN--ELDFEDKLHPGGP-FDPLGLAKDPDQGALLKVK 115
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
EIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 116 EIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 111/219 (50%), Gaps = 34/219 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE+ E+IHGRWAML A G
Sbjct: 54 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
+ PE LE+ +D WF AG + +Y +P + Q++LMG
Sbjct: 112 ILIPEWLERLGFIDNFN--WFDAGTR-------EYFADPTTLFV--------VQLILMGW 154
Query: 173 VEGFRINGL--PGVGEGNDL------------YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
+EG R + PG + + YPGG +FDP P ++ KEI
Sbjct: 155 IEGRRWADMIKPGCVDIDPKLPHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEI 214
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
KNGRLAM + GF+ QAI TG+GP++NL+ H+ +P N
Sbjct: 215 KNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCN 253
>gi|157965821|gb|ABW06947.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 926
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 110/199 (55%), Gaps = 41/199 (20%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
+A P++LTGEFPGD G+D GLS DP+ FAR R EV HGR AMLG +GC+ E W
Sbjct: 14 NATPPAHLTGEFPGDRGFDPLGLSKDPKVFARMRISEVFHGRLAMLGIVGCVGQE----W 69
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
L F + WF +S+ L LG ++ QV+ +E +R NG
Sbjct: 70 L---FNKGAWFD-----YSDFDLPRLG------------LIALQVI--APLEYWRGNG-- 105
Query: 183 GVG-EGND----LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G GND YPG FDPLGL T + K++EIKNGRLAM +M G VQ+ +T
Sbjct: 106 GFSWNGNDGPDRSYPG---FDPLGL-----TTEDTKLREIKNGRLAMSAMLGLEVQSHIT 157
Query: 238 GKGPLENLLDHLENPVANN 256
GK PL NL DHL +P N
Sbjct: 158 GKSPLTNLGDHLSSPFTAN 176
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 101/199 (50%), Gaps = 49/199 (24%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL------E 120
P+YLTGEFP D G+D AGL+ADP+ + R R EV +GR AML +GC+ PE+L E
Sbjct: 573 PAYLTGEFPADRGFDPAGLAADPKVYERMRVAEVFNGRLAMLAIVGCVYPELLGNGVWFE 632
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
W +VDF A++ QVV +E +R NG
Sbjct: 633 VWNKVDFYR------------------------------FALISLQVV--APLEYWRGNG 660
Query: 181 ---LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G + + YPG FDP L T K EIKNGRLAM MFG VQ VT
Sbjct: 661 GFGWDGEEKYDRSYPG---FDPCNL-----TTEYTKAAEIKNGRLAMIGMFGLEVQNHVT 712
Query: 238 GKGPLENLLDHLENPVANN 256
+GP+ NL++HL +P+A N
Sbjct: 713 AQGPVANLIEHLRHPLAAN 731
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 96/190 (50%), Gaps = 35/190 (18%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PSYLTG++ GD G+D AGL+ADP+ F R R EV HGR AML +G + P++L K
Sbjct: 205 PSYLTGQYFGDRGFDPAGLAADPKVFERMRVSEVYHGRLAMLAIVGAVVPDILGK----- 259
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
W++A N + +AV ++ + G + N P
Sbjct: 260 ---GAWYEAAQ--------------NAGIGVNEVAVFTAAYGVVEVARGLKANSDP---- 298
Query: 187 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 246
YPG FDPL L D K EIKNGRLA+ M G VQ VTG PL NL+
Sbjct: 299 -TKNYPG---FDPLKLTTD-----YTKEAEIKNGRLALTGMLGLEVQRHVTGVSPLVNLV 349
Query: 247 DHLENPVANN 256
+H+++P+ +N
Sbjct: 350 EHVKHPLNHN 359
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 97/200 (48%), Gaps = 46/200 (23%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
AQ P++LTGE+P D G+D L+ADP +AR R EV H R +ML +G I PE+L K
Sbjct: 387 AQPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK-- 444
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL---VEGFRING 180
WF+ G + G+ LGF +LM + E +R NG
Sbjct: 445 ------GAWFEVGNSV---DGIK----------------LGF--ILMAIAAPTEYWRGNG 477
Query: 181 LPGV----GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
G G + YPG FDPL L D K EIKNGRLAM + G Q +
Sbjct: 478 --GFNWDKGTADRSYPG---FDPLKLTTD-----YTKAAEIKNGRLAMTGLLGLTFQYLA 527
Query: 237 TGKGPLENLLDHLENPVANN 256
TG+ PL NL HL NPV N
Sbjct: 528 TGESPLANLAAHLANPVGAN 547
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 97/200 (48%), Gaps = 46/200 (23%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
AQ P++LTGE+P D G+D L+ADP +AR R EV H R +ML +G I PE+L K
Sbjct: 760 AQPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSILPELLGK-- 817
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL---VEGFRING 180
WF+ G + G+ LGF +LM + E +R NG
Sbjct: 818 ------GAWFEVGNSV---DGIK----------------LGF--ILMAIAAPTEYWRGNG 850
Query: 181 LPGV----GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
G G + YPG FDPL L D K EIKNGRLAM + G Q +
Sbjct: 851 --GFNWDKGTADRSYPG---FDPLKLTTD-----YTKAAEIKNGRLAMTGLLGLTFQYLA 900
Query: 237 TGKGPLENLLDHLENPVANN 256
TG+ PL NL HL NPV N
Sbjct: 901 TGESPLANLAAHLANPVGAN 920
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G PE+L K + +
Sbjct: 58 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTK-IGI- 115
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG Q + ++ V +++L+G EG R + G
Sbjct: 116 LNTPSWYTAGEQEY------------FTDTTTLFVV---ELILIGWAEGRRWADIIKPGS 160
Query: 187 -------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG + P EL+ KEIKNGRLAM ++ G +
Sbjct: 161 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGNGSPEKLKELRTKEIKNGRLAMLAVMGAW 220
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QA TG GP++NL HL +P
Sbjct: 221 FQAEYTGTGPIDNLFAHLADP 241
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 119/240 (49%), Gaps = 44/240 (18%)
Query: 41 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRA 97
AK +LW+ S Q+ +YL G PGD+G+D GLS DPE F R
Sbjct: 42 AKQNDNRQLWFA----------SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRW 90
Query: 98 L---EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNL 153
L E+ +GR AM+G +G I PE L K V + + WF+AGA I G Y +P
Sbjct: 91 LAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADPYT 149
Query: 154 VHAQSILAVLGFQVVLMGLVEGFRINGL--PGV--------------GEGNDLYPGGQYF 197
+ F++ L+G E R+ PG G G+ YPGG F
Sbjct: 150 LFV--------FEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIF 201
Query: 198 DPLGL-ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+PLG ELK+KEIKNGRLAM + G +QAI TG GP +NLLDHL +PV NN
Sbjct: 202 NPLGFGTKSEKEMKELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNN 261
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 101/192 (52%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PSYL G PGD+G+D+ GL P R + E+IH RWAML G I PE L
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLG---- 111
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLG P V ++ +L + + + VE R +
Sbjct: 112 ----NWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR--SMEKDS 163
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
E YPGG FDPLG + DP F ELKVKEIKNGRLA+ ++ GF V Q+ G GPLEN
Sbjct: 164 EKKK-YPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLEN 221
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 222 LATHLADPWHNN 233
>gi|210162154|gb|ACJ09675.1| putative chlorophyll a/b-binding protein [Cupressus sempervirens]
Length = 129
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/125 (59%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WY DRV YL P S + PSYLTGEF DYG DTA S D E A+NR LEVIH R +ML
Sbjct: 14 WYEQDRVLYLTPMS-EPPSYLTGEFTSDYGCDTAS-STDTETCAKNRELEVIHSR-SMLS 70
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
AL C+ V V E VWF AGA +FSEGGLDYLG+ +L+HAQSILA+ QV+L
Sbjct: 71 ALRCV---VALATYGVSIVEAVWF-AGA-LFSEGGLDYLGS-SLIHAQSILAIWACQVIL 124
Query: 170 MGLVE 174
MG VE
Sbjct: 125 MGAVE 129
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 99/192 (51%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G PGD+G+D GL+ PE F R + EV H RWAML G + PE L
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLG---- 107
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W +A GG YLGNP V ++ +L + V + E R
Sbjct: 108 ----NWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQRTM---EKD 158
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
YPGG FDPLG + DPV F E K+KEIKNGRLAM + GF V Q+ G GPLEN
Sbjct: 159 PEKKKYPGGA-FDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLEN 217
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 218 LASHLSDPWHNN 229
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 109/208 (52%), Gaps = 33/208 (15%)
Query: 73 EFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLRVD 126
PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I PE+ K +
Sbjct: 5 RLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIP 63
Query: 127 FKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG 183
+ + WFK G I G +Y + + F + LMG E R+ PG
Sbjct: 64 PETALPWFKTGV-IPPAGTYNYWADSYTLFV--------FNMALMGFAEHRRLQDWYNPG 114
Query: 184 --------------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
G G+ YPGG F+PLG ELK+KEIKNGRLAM ++ G
Sbjct: 115 SMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILG 174
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANNA 257
+F+Q +VTG GP +NLLDHL +PV NN
Sbjct: 175 YFIQGLVTGVGPFQNLLDHLADPVNNNV 202
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 128/279 (45%), Gaps = 41/279 (14%)
Query: 1 MASIMAAATASSSTSLRAT-----PFLGQS--RTTANALKDVVPMGNAKYTMGNELWYGP 53
MAS + AA +S ++LR P G S RT + + + + G
Sbjct: 47 MASTVTAANSSHGSALRTRTASPRPVAGWSCRRTLSTPAHHHHARPSPRARVVAVRAAGT 106
Query: 54 DRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC 113
R +L P YL G PGD+G+D GL +PEA E++H R+AM G G
Sbjct: 107 QRATWLP--GLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGI 164
Query: 114 ITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV 173
+ ++L D PVWF+AGA F D+ + A+ Q+ LMG
Sbjct: 165 LFTDLLRVSGNSDL--PVWFEAGAAKF-----DF---------ANTTALFFVQLFLMGFA 208
Query: 174 EGFRINGLPGVG----EGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEI 217
E R G EG + YPGG F+PLGLA D + K+KEI
Sbjct: 209 ETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEI 268
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
KNGRLAM +M GF VQA VT GP++NLL HL +P N
Sbjct: 269 KNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKN 307
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 128/279 (45%), Gaps = 41/279 (14%)
Query: 1 MASIMAAATASSSTSLRAT-----PFLGQS--RTTANALKDVVPMGNAKYTMGNELWYGP 53
MAS + AA +S ++LR P G S RT + + + + G
Sbjct: 1 MASTVTAANSSHGSALRTRTASPRPVAGWSCRRTLSTPAHHHHARPSPRARVVAVRAAGT 60
Query: 54 DRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC 113
R +L P YL G PGD+G+D GL +PEA E++H R+AM G G
Sbjct: 61 QRATWLP--GLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGI 118
Query: 114 ITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV 173
+ ++L D PVWF+AGA F D+ + A+ Q+ LMG
Sbjct: 119 LFTDLLRVSGNSDL--PVWFEAGAAKF-----DF---------ANTTALFFVQLFLMGFA 162
Query: 174 EGFRINGLPGVG----EGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEI 217
E R G EG + YPGG F+PLGLA D + K+KEI
Sbjct: 163 ETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEI 222
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
KNGRLAM +M GF VQA VT GP++NLL HL +P N
Sbjct: 223 KNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKN 261
>gi|356552039|ref|XP_003544379.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein 4,
chloroplastic-like [Glycine max]
Length = 274
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 104/216 (48%), Gaps = 31/216 (14%)
Query: 49 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
WYG D +LG S + PSYLTGE PGDY +D GL DP + E++H RW L
Sbjct: 70 FWYGEDGPPWLGSISYKYPSYLTGEMPGDYDFDIVGLGQDPVELXKYFNFEILHARWVTL 129
Query: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYL--GNPNLVHAQSILAVLGFQ 166
+ + P++L V F EPVW++AG LDYL +L +Q + + Q
Sbjct: 130 AFVSAVIPKILNLLGAVHFVEPVWWRAGYSKLKVNTLDYLRIQGLHLAGSQGAVVIAICQ 189
Query: 167 VVLMGLVEGFRINGLP-----GVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNG 220
++ E R G G+ D+ YPGG FDPL L++DP F ELKVKE+KNG
Sbjct: 190 ILKQVGPEYARXCGTEALKPLGIYLPCDINYPGGALFDPLNLSNDPEAFEELKVKEVKNG 249
Query: 221 RLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+L+DH+ +P NN
Sbjct: 250 -----------------------SLIDHISDPFHNN 262
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 100/193 (51%), Gaps = 18/193 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV--LEKWLR 124
P++L G PGD+G+D GL+ PE F R + E+ H RWAML G + PE L W++
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 114
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
W +G YLGNP V ++ +L + + + E R
Sbjct: 115 AQ----EW-----AALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTM---EK 160
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP F ELK+KEIKNGRLAM + GF V Q+ G GPLE
Sbjct: 161 DPEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLE 219
Query: 244 NLLDHLENPVANN 256
NL HL +P NN
Sbjct: 220 NLATHLADPWHNN 232
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 113/224 (50%), Gaps = 31/224 (13%)
Query: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGPDR YL A PSYL G GDYG+D GL AD A + R EVIH RWA
Sbjct: 102 WYGPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWA 160
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
ML G + PE L VW + G ++F +G G P + + A + Q
Sbjct: 161 MLAIPGVVIPEAL------GLPGGVWTETG-KVFLDG---ETGRPFFLENPIVFAAV--Q 208
Query: 167 VVLMGLVEGFRING------LPGVGEGND--------LYPGGQYFDPLGLADDPVTFAEL 212
V LM VE FR +G +P G+ ++ + PGG D +A +P A L
Sbjct: 209 VALMAGVEQFRSSGEGPAGFVPFKGKFDESAFKGLDPINPGGP-LDFFNVASNPQDLALL 267
Query: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
KVKEIKNGRLAM +M G FVQ + TG+GP N H+ +P N
Sbjct: 268 KVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYN 311
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G PE+L K + +
Sbjct: 63 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTK-IGI- 120
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 184
P W+ AG Q + ++ V +++L+G EG R + PG
Sbjct: 121 LNTPSWYTAGEQTY------------FADTTTLFIV---ELILIGWAEGRRWADIIKPGC 165
Query: 185 GE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 166 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 225
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QA TG GP++NL HL +P
Sbjct: 226 FQAEYTGTGPIDNLFAHLADP 246
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 100/194 (51%), Gaps = 18/194 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV--LEKWLR 124
P++L G PGD+G+D GL+ PE F R + E+ H RWAML G + PE L W++
Sbjct: 80 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 139
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
W +G YLGNP V ++ +L + + + E R
Sbjct: 140 AQ----EW-----AALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTM---EK 185
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP F ELK+KEIKNGRLAM + GF V Q+ G GPLE
Sbjct: 186 DPEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLE 244
Query: 244 NLLDHLENPVANNA 257
NL HL +P N +
Sbjct: 245 NLATHLADPWHNTS 258
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 104/194 (53%), Gaps = 15/194 (7%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G+ GDYG+D GL DPE+ E++H R+AMLG G + ++L +
Sbjct: 56 PPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV-------EGFRIN 179
PVW++AGA F D+ L+ Q +L + V EG
Sbjct: 116 L--PVWYEAGAVKF-----DFASTKTLIVVQFLLMGFAETKRYVDYVSPGSQAKEGSFFF 168
Query: 180 GLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G+ EG + YPGG +PLGLA D + K+KEIKNGRLAM +M GFFVQA VT
Sbjct: 169 GIEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTH 228
Query: 239 KGPLENLLDHLENP 252
GP++NL++HL NP
Sbjct: 229 TGPIDNLVEHLSNP 242
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 98/192 (51%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G PGD+G+D GL+ PE F R + EV H RWAML G + PE L
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLG---- 111
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLGNP V S+ +L + V + E R
Sbjct: 112 ----NWVKAQEWAAVPGGQATYLGNP--VPWGSLPTILVIEFVAIAFAEHQRTM---EKD 162
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
YPGG FDPLG + DP F E K+KEIKNGRLAM + GF V Q+ G GPLEN
Sbjct: 163 PEKKKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLEN 221
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 222 LATHLADPWHNN 233
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 109/201 (54%), Gaps = 33/201 (16%)
Query: 79 GWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV- 131
G+D GLS DPE F + L EVI+GR+AMLGA G I PE+ K + + +
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 132 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG------ 183
WF+ G I G Y +P + F++ LMG E R+ PG
Sbjct: 60 WFQTGV-IPPAGSYTYWADPYTLFV--------FEMALMGFAEHRRLQDWYNPGSMGKQY 110
Query: 184 --------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI 235
G G+ YPGG +F+PLG D + ELK+KEIKNGRLAM ++ G+F+Q +
Sbjct: 111 FLGLEKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGL 170
Query: 236 VTGKGPLENLLDHLENPVANN 256
VTG GP +NLLDHL +PV+NN
Sbjct: 171 VTGVGPFQNLLDHLADPVSNN 191
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 106/208 (50%), Gaps = 36/208 (17%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G PGDYG+D GL PE E++H R+AM G G + +++ RV
Sbjct: 60 PAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGILGTDLI----RVS 115
Query: 127 F--KEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
PVWF+AGA F D+ + A+ Q++LMG VE R
Sbjct: 116 GIGNLPVWFEAGATKF-----DF---------ANTTALFFVQLLLMGFVETKRYMDFVSP 161
Query: 185 G----EGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
G EG L YPGG F+P+GLA D E+K+KEIKNGRLAM +M
Sbjct: 162 GSQAKEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIENANEVKLKEIKNGRLAMVAML 221
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANN 256
GF VQA VT GP++NLL HL +P N
Sbjct: 222 GFIVQASVTHAGPIDNLLTHLSDPFNKN 249
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 107/201 (53%), Gaps = 33/201 (16%)
Query: 79 GWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV- 131
G+D GLS DPE F + L EVI+GR+AMLGA G I PE+ K + + +
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 132 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG------ 183
WF+ G I G Y +P + F++ LMG E R PG
Sbjct: 60 WFQTGV-IPPAGSYTYWADPYTLFV--------FEMALMGFAEHRRFQDWYNPGSMGKQY 110
Query: 184 --------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI 235
G GN YPGG +F+PLG D + ELK+KEIKNGRLAM ++ G+F+Q +
Sbjct: 111 FLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGL 170
Query: 236 VTGKGPLENLLDHLENPVANN 256
VTG GP +NLLDHL +PV NN
Sbjct: 171 VTGVGPFQNLLDHLADPVNNN 191
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE--K 121
+ P++L + PG+YG+D L DP + R EVIHGRWAMLG G + E+L
Sbjct: 43 SDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGALAVELLGYGN 102
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
W + P+W G G + G ++LA F+ V M EG R +
Sbjct: 103 W----YDAPLWAVTG------GKATWFGIEVPFDLNTLLA---FEFVAMAAAEGQRND-- 147
Query: 182 PGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
G +YPGG FDPLG A D ELK+KEIKNGRLAM + GF Q TGKGP
Sbjct: 148 ----AGGVIYPGGA-FDPLGFAKDSSKAGELKLKEIKNGRLAMVAFLGFIAQHAATGKGP 202
Query: 242 LENLLDHLENPVANN 256
L L +HL NP N
Sbjct: 203 LAALGEHLANPWGAN 217
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 108/226 (47%), Gaps = 46/226 (20%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 111
GPDR + + P +L G PGD+G+D GL +DPE E++H RWAML
Sbjct: 56 GPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVA 113
Query: 112 GCITPEVLEKW-LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLM 170
G + PEVLEKW D+ W AGA+ DY +P + Q+ LM
Sbjct: 114 GILVPEVLEKWGFMEDYS---WIDAGAR-------DYFADPWTLFVS--------QMALM 155
Query: 171 GLVEGFRI-------------------NGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFA 210
G EG R N +P VG YPGG +FD P
Sbjct: 156 GWAEGRRWADYLNPGCVAVEPRLPNRRNPVPDVG-----YPGGLWFDWGNWGRGSPEPVM 210
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF+ QA+ TG+GP++NLL HL +P N
Sbjct: 211 VLRTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCN 256
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 108/225 (48%), Gaps = 43/225 (19%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 111
GPDR + + P +L G PGD+G+D GL ++PE E++HGRWAML A
Sbjct: 62 GPDRPIWFP--GSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAA 119
Query: 112 GCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
G + P++L +W +D AG F G +Y +P + Q+ LMG
Sbjct: 120 GILVPDLLARWGFID--------AGFSWFDAGSREYFADPWTLFVS--------QMALMG 163
Query: 172 LVEGFRI-------------------NGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
EG R N +P VG YPGG +FD P
Sbjct: 164 WAEGRRWADYLRPGCVDIEPRFPNRRNPVPDVG-----YPGGLWFDWANWGRGSPEPVMV 218
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF+ QA+ TG+GP++NLL HL +P N
Sbjct: 219 LRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCN 263
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 108/225 (48%), Gaps = 43/225 (19%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 111
GPDR + + P +L G PGD+G+D GL ++PE E++HGRWAML A
Sbjct: 62 GPDRPIWFP--GSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAA 119
Query: 112 GCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
G + P++L +W +D AG F G +Y +P + Q+ LMG
Sbjct: 120 GILVPDLLARWGFID--------AGFSWFDAGSREYFADPWTLFVS--------QMALMG 163
Query: 172 LVEGFRI-------------------NGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
EG R N +P VG YPGG +FD P
Sbjct: 164 WAEGRRWADYLRPGCVDIEPRFPNRKNPVPDVG-----YPGGLWFDWANWGRGSPEPVMV 218
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF+ QA+ TG+GP++NLL HL +P N
Sbjct: 219 LRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCN 263
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G PE+L K + +
Sbjct: 60 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTK-IGI- 117
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 184
P W+ AG Q + ++ V +++L+G EG R + PG
Sbjct: 118 LNTPSWYTAGEQEY------------FTDTTTLFIV---ELILIGWAEGRRWADIIKPGC 162
Query: 185 GE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGTGSPEKLKELRTKEIKNGRLAMLAVMGAW 222
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QA TG GP++NL HL +P
Sbjct: 223 FQAEYTGTGPIDNLFAHLADP 243
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 108/215 (50%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL++DPE+ N+ E++H RWAMLGA G
Sbjct: 64 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAG 121
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K + + P W+ AG L + + +++ +G
Sbjct: 122 IFIPEFLTK-IGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVELIFIGW 164
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 165 AEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 224
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 225 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 259
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 99/192 (51%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PSYL G PGD+G+D GL P R + E+IH RWAML G I PE L
Sbjct: 56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLG---- 111
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLG P V ++ +L + + + VE R +
Sbjct: 112 ----NWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR--SMEKDS 163
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
E YPGG FDPLG + DP F ELKVKEIKNGRLA+ + GF V Q+ G GPLEN
Sbjct: 164 EKKK-YPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 222 LATHLADPWHNN 233
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G P D+G+D GL +DPE N E++H RWAMLGA G PE+L K L +
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTK-LGI- 140
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG Q +Y + ++ L V+ +++ +G EG R + G
Sbjct: 141 LNTPSWYTAGEQ-------EYFTD------KTTLFVV--EMIFLGWAEGRRWADIIKPGS 185
Query: 187 -------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 186 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 245
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QA TG GP++NLL HL +P
Sbjct: 246 FQAEYTGTGPIDNLLAHLADP 266
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 127/267 (47%), Gaps = 45/267 (16%)
Query: 10 ASSSTSLRATP-FLGQSRTTANALKDVVPMG----NAKYTMGNELWYGPDRVKYLGPFSA 64
A++ T+L A P FL + + A P +A + G LW
Sbjct: 2 AATFTALNAAPAFLTGRKVVSKARAGPAPRSTFQVSAAASQGRRLWAP----------GV 51
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLR 124
+ PSYL GE GDYGWD GL A PEA R E++H RWAML G + E++
Sbjct: 52 EAPSYLNGELAGDYGWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIV----- 106
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR------- 177
K V+F + G+++ G V+ +LA ++ +L VE R
Sbjct: 107 ---KPGVFFYNAGLPENLPGINFGGPEGKVNLGGLLA---WEFLLFHWVEVRRWQDIKKK 160
Query: 178 --INGLPGVGEGNDL------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
+N P + +GN + YPGG FDP G + F E++ KEIKNGRLAM + G
Sbjct: 161 DSVNQDP-IFKGNKVPNPELGYPGG-IFDPFGFSKG--NFKEVQTKEIKNGRLAMVAFVG 216
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANN 256
F +QA TG+GPL NL HL NP NN
Sbjct: 217 FIIQAQATGQGPLANLGAHLANPFGNN 243
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 119/240 (49%), Gaps = 44/240 (18%)
Query: 41 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRA 97
AK +LW+ S Q+ +YL G PGD+G++ GLS DPE F R
Sbjct: 42 AKQNDNRQLWFA----------SKQSLTYLDGTLPGDFGFNPLGLS-DPEGTGGFIEPRW 90
Query: 98 L---EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNL 153
L E+ +GR AM+G +G I PE L K V + + WF+AGA I G Y +P
Sbjct: 91 LAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADPYT 149
Query: 154 VHAQSILAVLGFQVVLMGLVEGFRINGL--PGV--------------GEGNDLYPGGQYF 197
+ F++ L+G E R+ PG G G+ YPGG F
Sbjct: 150 LFV--------FEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIF 201
Query: 198 DPLGL-ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+PLG ELK+KEIKNGRLAM + G +QAI TG GP +NLLDHL +PV NN
Sbjct: 202 NPLGFGTKSEKEMKELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNN 261
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 103/201 (51%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G PE L K + V
Sbjct: 65 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTK-IGV- 122
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG Q + ++ + +++L+G EG R + G
Sbjct: 123 LNTPFWYTAGEQQY------------FTDTTTLFII---ELILIGWAEGRRWADIIKPGS 167
Query: 187 -------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 168 VNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 227
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QA TG GP++NL HL +P
Sbjct: 228 FQAEYTGTGPIDNLFAHLADP 248
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 103/201 (51%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G PE L K + V
Sbjct: 75 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTK-IGV- 132
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG Q + ++ + +++L+G EG R + G
Sbjct: 133 LNTPFWYTAGEQQY------------FTDTTTLFII---ELILIGWAEGRRWADIIKPGS 177
Query: 187 -------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 178 VNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 237
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QA TG GP++NL HL +P
Sbjct: 238 FQAEYTGTGPIDNLFAHLADP 258
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 118/253 (46%), Gaps = 51/253 (20%)
Query: 24 QSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTA 83
+ R ANA K V T+ L GPDR + + P +L G PGD+G+D
Sbjct: 3 RGRRRANATKGGV------STVCEPL--GPDRPIWFP--GSSPPPWLDGSLPGDFGFDPL 52
Query: 84 GLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEG 143
GL ++PE E++HGRWAML A G + P++L +W +D AG F G
Sbjct: 53 GLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWGFID--------AGFSWFDAG 104
Query: 144 GLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-------------------NGLPGV 184
+Y +P + Q+ LMG EG R N +P V
Sbjct: 105 SREYFADPWTLFVS--------QMALMGWAEGRRWADYLRPGCVDIEPRFPNRKNPVPDV 156
Query: 185 GEGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
G YPGG +FD P L+ KEIKNGRLAM + GF+ QA+ TG+GP++
Sbjct: 157 G-----YPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPID 211
Query: 244 NLLDHLENPVANN 256
NLL HL +P N
Sbjct: 212 NLLAHLADPGHCN 224
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 98/192 (51%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G PGD+G+D GL+ PE F R + EV H RWAML G + PE L
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLG---- 107
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W +A GG YLGNP V ++ +L + V + E R
Sbjct: 108 ----NWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQRTM---EKD 158
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
YPGG FDPLG + DPV F E K+KEIKNGRLAM + F V Q+ G GPLEN
Sbjct: 159 PEKKKYPGGA-FDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVAFCVQQSAYPGTGPLEN 217
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 218 LASHLSDPWHNN 229
>gi|427338377|gb|AFY52187.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338379|gb|AFY52188.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338381|gb|AFY52189.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|428230862|gb|AFY99053.1| chlorophyll binding protein, partial [Clermontia fauriei]
Length = 197
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 108/201 (53%), Gaps = 33/201 (16%)
Query: 79 GWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV- 131
G+D GLS DPE F + L EV +GR+AMLGA+G I PE+ K + + +
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 132 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG------ 183
WF+ G I G Y +P + F++ LMG E R+ PG
Sbjct: 60 WFQTGV-IPPAGSYTYWADPYTLFV--------FEMALMGFAEHRRLQDWYNPGSMGKQY 110
Query: 184 --------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI 235
G G+ YPGG +F+PLG D + ELK+KEIKNGRLAM ++ G+F+Q +
Sbjct: 111 FLGLEKGFAGSGDPAYPGGPFFNPLGFGKDETSMKELKLKEIKNGRLAMLAILGYFIQGL 170
Query: 236 VTGKGPLENLLDHLENPVANN 256
VTG GP +NLLDHL +PV NN
Sbjct: 171 VTGVGPFQNLLDHLADPVNNN 191
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 104/202 (51%), Gaps = 30/202 (14%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G P DYG+D L +DP+ A R E++H RWAM+G G + P +L K ++
Sbjct: 9 PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMN 68
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
PVWF+AG + N N + A+L + + MG VE R + G
Sbjct: 69 V--PVWFEAGK----------VANDN--SSVPFSALLMVEFLAMGFVETKRWYDIKSPGS 114
Query: 187 GNDL---------------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGF 230
D YPGG +FDP G + ++ L+VKEI NGRLAM +M GF
Sbjct: 115 QGDGSIFGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAMVGF 174
Query: 231 FVQAIVTGKGPLENLLDHLENP 252
+ Q TGKGP++NL DH+ +P
Sbjct: 175 WAQYAATGKGPVDNLFDHIADP 196
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 113/232 (48%), Gaps = 46/232 (19%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE E++H RWAML G
Sbjct: 54 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFG 111
Query: 113 CITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
+ PE+LEK + + E W+ AGA+ +Y +P + Q+ LMG
Sbjct: 112 ILVPELLEK---IGYIENFSWYDAGAR-------EYFVDPTTLFV--------VQMGLMG 153
Query: 172 LVEGFR-------------------INGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
VEG R N P VG YPGG +FDP+ P
Sbjct: 154 WVEGRRWADMVNPGSVDIEPKVPHITNPKPDVG-----YPGGLWFDPMMWGRGSPEPVMV 208
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATK 263
L+ KEIKNGRLAM + GF+ QAI TG+GP+ENL+ HL +P N + T+
Sbjct: 209 LRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFTR 260
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G P D+G+D GL +DPE N E++H RWAMLGA G PE+L K L +
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTK-LGI- 140
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG L+Y + ++ L V+ +++ +G EG R + G
Sbjct: 141 LNTPSWYTAGE-------LEYFTD------KTTLFVV--EMIFLGWAEGRRWADIIKPGS 185
Query: 187 -------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 186 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 245
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QA TG GP++NLL HL +P
Sbjct: 246 FQAEYTGTGPIDNLLAHLADP 266
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 120/259 (46%), Gaps = 55/259 (21%)
Query: 26 RTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGL 85
RT ANA K V + PDR + + P +L G PGD+G+D GL
Sbjct: 36 RTIANATKGVSAVCEP---------LPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGL 84
Query: 86 SADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGG 144
+DPE E++H RWAML G + PE+LE R+ + E W+ AG +
Sbjct: 85 GSDPELLKWFAQAELMHSRWAMLAVFGILVPELLE---RIGYIENFSWYDAGTR------ 135
Query: 145 LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR-------------------INGLPGVG 185
+Y +P + Q+ LMG VEG R N P VG
Sbjct: 136 -EYFVDPTTLFV--------VQMGLMGWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVG 186
Query: 186 EGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 244
YPGG +FDP+ P L+ KEIKNGRLAM + GF+ QAI TG+GP+EN
Sbjct: 187 -----YPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIEN 241
Query: 245 LLDHLENPVANNAWVYATK 263
L+ HL +P N + T+
Sbjct: 242 LMAHLADPGHCNIFSAFTR 260
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 105/205 (51%), Gaps = 32/205 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G PE L K + +
Sbjct: 67 PPWLDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTK-IGI- 124
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 184
P W+ AG Q + ++ + +++L+G EG R + PG
Sbjct: 125 LSTPSWYTAGEQQY------------FTDTTTLFII---ELILIGWAEGRRWADIIKPGC 169
Query: 185 GE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 170 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKLKELRTKEIKNGRLAMLAVMGAW 229
Query: 232 VQAIVTGKGPLENLLDHLENPVANN 256
QA TG GP++NL HL +P N
Sbjct: 230 FQAEYTGTGPIDNLFAHLADPGHAN 254
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 101/206 (49%), Gaps = 32/206 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL DP + E++H R+AM G G + ++L D
Sbjct: 69 PPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILFTDLLRVSGNSD 128
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG- 185
PVWF+AGA F + A+ Q++LMG E R G
Sbjct: 129 L--PVWFEAGAAKFEFA--------------NTTALFFVQLLLMGFAETKRYMDFKNPGS 172
Query: 186 ---EGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 230
EG + YPGG F+PLGLA D E K+KEIKNGRLAM +M GF
Sbjct: 173 QAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAMVAMLGF 232
Query: 231 FVQAIVTGKGPLENLLDHLENPVANN 256
VQA VT GP++NLL HL +P N
Sbjct: 233 MVQASVTHAGPIDNLLTHLSDPFNKN 258
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 113/249 (45%), Gaps = 39/249 (15%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSY 69
A SS S R PF + T+ + TM E G R P++
Sbjct: 22 APSSRSGRLAPFCANATTSG------------RVTMSAEWMPGQPR-----------PAH 58
Query: 70 LTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKE 129
L G PGD+G+D GL+ PE F R + EV H RWAML G + PE L
Sbjct: 59 LDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLG------- 111
Query: 130 PVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGN 188
W KA GG YLG P V ++ +L + V + E R
Sbjct: 112 -NWVKAQEWAAVPGGQATYLGAP--VPWGTLPTILVIEFVAIAFAEHQRTM---EKDPEK 165
Query: 189 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLD 247
YPGG FDPLG + DP F E K+KEIKNGRLAM + GF V Q+ G GPLENL
Sbjct: 166 KKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAS 224
Query: 248 HLENPVANN 256
HL +P NN
Sbjct: 225 HLADPWHNN 233
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 108/204 (52%), Gaps = 36/204 (17%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G PGD+G+D GL DPE+ E++H R+AMLG LG + ++L RV
Sbjct: 68 PTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLL----RVA 123
Query: 127 FKE--PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
P+WF+AGA + + +++ V Q++LMG E R
Sbjct: 124 GVNSIPIWFEAGAVKY-----------EFANTGTLVVV---QLLLMGYAETRRYMDFVSP 169
Query: 185 G----EGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
G EG+ YPGG +PLGLA D + E K+KEIKNGRLAM ++
Sbjct: 170 GSQAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAIL 229
Query: 229 GFFVQAIVTGKGPLENLLDHLENP 252
G FVQA VT GP++NL++HL NP
Sbjct: 230 GIFVQASVTHVGPIDNLVEHLSNP 253
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 113/249 (45%), Gaps = 39/249 (15%)
Query: 10 ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSY 69
A SS S R PF + T+ + TM E G R P++
Sbjct: 22 APSSRSGRLAPFCANATTSG------------RVTMSAEWMPGQPR-----------PAH 58
Query: 70 LTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKE 129
L G PGD+G+D GL+ PE F R + EV H RWAML G + PE L
Sbjct: 59 LDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLG------- 111
Query: 130 PVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGN 188
W KA GG YLG P V ++ +L + V + E R
Sbjct: 112 -NWVKAQEWAAVPGGQATYLGAP--VPWGTLPTILVIEFVAIAFAEHQRTM---EKDPEK 165
Query: 189 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLD 247
YPGG FDPLG + DP F E K+KEIKNGRLAM + GF V Q+ G GPLENL
Sbjct: 166 KKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAS 224
Query: 248 HLENPVANN 256
HL +P NN
Sbjct: 225 HLADPWHNN 233
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL +DPE E++H RWAMLGA G PE L K ++
Sbjct: 76 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILN 135
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 184
P W+ AG L+Y + ++ L ++ +++ +G EG R + PG
Sbjct: 136 --TPSWYTAGE-------LEYFTD------KTTLFIV--EMIFIGWAEGRRWADIIKPGC 178
Query: 185 GE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 179 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAW 238
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QAI TG GP++NL HL +P
Sbjct: 239 FQAIYTGTGPIDNLFAHLADP 259
>gi|86169487|gb|ABC86983.1| chlorophyll a/b binding protein [Brassica napus]
Length = 75
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 63/76 (82%), Gaps = 1/76 (1%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
S + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +
Sbjct: 1 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR- 59
Query: 123 LRVDFKEPVWFKAGAQ 138
V F E VWFKAG+Q
Sbjct: 60 NGVKFGEAVWFKAGSQ 75
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 110/215 (51%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE N E++H RWAMLGA G
Sbjct: 63 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 120
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K + + P W+ AG L+Y + + L ++ +++ +G
Sbjct: 121 IFIPEFLTK-IGI-LNTPSWYDAGK-------LEYFTD------TTTLFII--ELIFIGW 163
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 164 AEGRRWADILKPGCVNTDPIFPNNRLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 223
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 109/219 (49%), Gaps = 35/219 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G
Sbjct: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAG 119
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K L + P W+ AG Q + ++ V ++V +G
Sbjct: 120 IFIPEFLTK-LGI-LNTPSWYTAGEQEY------------FTDTTTLFIV---ELVFIGW 162
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 163 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLL-DHLENPVAN 255
KNGRLAM ++ G + Q I TG GP++NL HL +P A
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADPHAT 261
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 108/201 (53%), Gaps = 33/201 (16%)
Query: 79 GWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV- 131
G+D GLS DPE F + L EV +GR+AMLGA+G I PE+ K + + +
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 132 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG------ 183
WF+ G I G Y +P + F++ LMG E R+ PG
Sbjct: 60 WFQTGV-IPPAGSYTYWADPYTLFV--------FEMALMGFAEHRRLQDWYNPGSMGKQY 110
Query: 184 --------VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI 235
G G+ YPGG +F+PLG D + ELK+KEIKNGRLAM ++ G+F+Q +
Sbjct: 111 FLGLEKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGL 170
Query: 236 VTGKGPLENLLDHLENPVANN 256
VTG GP +NLLDHL +PV NN
Sbjct: 171 VTGVGPFQNLLDHLADPVNNN 191
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL +DPE E++H RWAMLGA G PE L K + +
Sbjct: 77 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTK-IGI- 134
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 184
P W+ AG L+Y + ++ L ++ +++ +G EG R + PG
Sbjct: 135 LNTPSWYTAGE-------LEYFTD------KTTLFIV--EMIFIGWAEGRRWADIIKPGC 179
Query: 185 GE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 180 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAW 239
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QAI TG GP++NL HL +P
Sbjct: 240 FQAIYTGTGPIDNLFAHLADP 260
>gi|414870050|tpg|DAA48607.1| TPA: hypothetical protein ZEAMMB73_891704 [Zea mays]
Length = 250
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 59/66 (89%)
Query: 133 FKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYP 192
FKAGAQIFSEGGLDYLGNPNLVHA SIL VLG QVVLMGLVEGFR+NG GV +GN LYP
Sbjct: 34 FKAGAQIFSEGGLDYLGNPNLVHAHSILTVLGSQVVLMGLVEGFRVNGHDGVDDGNSLYP 93
Query: 193 GGQYFD 198
GGQYFD
Sbjct: 94 GGQYFD 99
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 111/216 (51%), Gaps = 34/216 (15%)
Query: 65 QTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEV 118
Z +YL G PGD+G+D GLS DPE F R L E+ +GR AM+G +G I PE
Sbjct: 55 ZXLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEA 113
Query: 119 LEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
L K V + + WF+AGA I G Y +P + F++ L+G E R
Sbjct: 114 LGKVGLVPSETAIPWFQAGA-IPPAGTYQYWADPYTLFV--------FEMALIGFAEHRR 164
Query: 178 INGL--PGV--------------GEGNDLYPGGQYFDPLGL-ADDPVTFAELKVKEIKNG 220
+ PG G G+ YPGG F+PLG ELK+KEIKNG
Sbjct: 165 LQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNG 224
Query: 221 RLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
RLAM + G +QAI TG GP +NLLDHL +PV NN
Sbjct: 225 RLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNN 260
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 111/233 (47%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGL--------------------------------SADPEA 91
A++P YL G GDYG+D GL + DP++
Sbjct: 59 AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKS 118
Query: 92 -----------FARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG IT E WL W AG
Sbjct: 119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVE----WL----TGVTWQDAGKVEL 170
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
+G YLG P SI ++ +V+++G +E F+ N + LYPGG++FDPL
Sbjct: 171 VDGS-SYLGQP---LPFSISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPL 223
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DPV A+L++ EIK+ RLAM GF VQA TGKGPL N HL +P+
Sbjct: 224 GLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 95/150 (63%), Gaps = 6/150 (4%)
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
MLGA G I PE K+ E VWFK GA + L+Y GN ++ ++ + +
Sbjct: 1 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAAE 57
Query: 167 VVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
VVL+G E +RI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 58 VVLVGGAEYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFS 114
Query: 227 MFGFFVQAIVTGKGPLENLLDHLENPVANN 256
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 115 MLGFFIQAYVTGEGPVENLSKHLSDPFGNN 144
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 109/220 (49%), Gaps = 36/220 (16%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE E++H RWAML G
Sbjct: 52 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAG 109
Query: 113 CITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
+ PE LE R+ F E W+ AGAQ ++ +P + Q+ LMG
Sbjct: 110 ILIPECLE---RLGFIENFSWYDAGAQ-------EFFADPTTLFV--------VQLALMG 151
Query: 172 LVEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKE 216
VEG R L PG + D+ YPGG +FDP P L+ KE
Sbjct: 152 WVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKE 211
Query: 217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
IKNGRLAM + GF QAI TG+GP+ENL+ H+ +P N
Sbjct: 212 IKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCN 251
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 100/193 (51%), Gaps = 18/193 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G PGD+G+D GL PE R + E+IH RWAML G + PE L
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYG---- 110
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR-INGLPGV 184
W KA GG YLGNP V ++ +L + + + VE R + P
Sbjct: 111 ----NWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP-- 162
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP ELKVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 163 --EKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219
Query: 244 NLLDHLENPVANN 256
NL HL +P NN
Sbjct: 220 NLATHLADPWHNN 232
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 108/221 (48%), Gaps = 29/221 (13%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
GN++++M E G R P YL G PGD+G+D GL P R +
Sbjct: 39 GNSRFSMSAEWMPGQPR-----------PPYLDGSAPGDFGFDPLGLGEVPSNLERYKES 87
Query: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQ 157
E+IH RWAML G + PE L W KA GG YLG P V
Sbjct: 88 ELIHCRWAMLAVPGILVPEALGLG--------NWVKAQEWAAIPGGQATYLGQP--VPWG 137
Query: 158 SILAVLGFQVVLMGLVEGFR-INGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKE 216
++ +L + + + VE R + P YPGG FDPLG + DP F ELKVKE
Sbjct: 138 TLPTILAIEFLAIAFVEHQRSMEKDP----EKKKYPGGA-FDPLGYSKDPKKFEELKVKE 192
Query: 217 IKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLENPVANN 256
IKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 193 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 111/215 (51%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL++DPE+ N E++H RWAMLGA G
Sbjct: 63 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K + + P W+ AG L+Y + + L ++ ++ +G
Sbjct: 121 IFIPEFLTK-IGI-LNTPSWYTAGE-------LEYFTD------TTTLFIV--ELFFIGW 163
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 164 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 223
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 115/258 (44%), Gaps = 31/258 (12%)
Query: 17 RATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGP---FSAQTPSYLTGE 73
+ TP T +K P+ T WYGP R YL +A PSYL G+
Sbjct: 34 KPTPAKKAPVTVKKTVKKAAPVKTTVKTADLSKWYGPQRKLYLPSGLLTTADIPSYLDGK 93
Query: 74 FPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWF 133
GDYG+D GL AD A + R EVIH RWAML G + PE L + W
Sbjct: 94 LAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWAMLAVPGIVIPEAL------NIAGGDWR 146
Query: 134 KAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING---------LPGV 184
+ G ++F EG G L ++ + +VLMG E FR + G
Sbjct: 147 ETG-KVFLEGSTGRFGPAELWLGIAVAPL----IVLMGGAEKFRSDPASAPSGFVPFKGS 201
Query: 185 GEGND------LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G D + PGG D +A P LKVKEIKNGRLAM +M G FVQ TG
Sbjct: 202 FTGKDFAKLDPINPGGP-LDFYNVAATPQDLEILKVKEIKNGRLAMIAMLGVFVQGATTG 260
Query: 239 KGPLENLLDHLENPVANN 256
+GP N H+ +P N
Sbjct: 261 EGPAANWGKHVADPFGYN 278
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 108/219 (49%), Gaps = 25/219 (11%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
G+A+ TM + G R P YL G PGD+G+D L PE R +
Sbjct: 38 GSARVTMSADWMPGQPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 86
Query: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
E+IH RWAML G + PE L V +E W G YLGNP V +
Sbjct: 87 ELIHCRWAMLAVPGVLVPEALGLGNWVQAQE--W-----AAIPGGQATYLGNP--VPWGN 137
Query: 159 ILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
+ +L + + + VE R + E YPGG FDPLG + DPV F E KVKEIK
Sbjct: 138 LPTILAIEFLAIAFVEHQR--SMEKDTEKKK-YPGGA-FDPLGYSKDPVKFEEYKVKEIK 193
Query: 219 NGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLENPVANN 256
NGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 194 NGRLAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNN 232
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 115/221 (52%), Gaps = 38/221 (17%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GLS DPE F + L EVIHGRWAMLG G + P
Sbjct: 64 SDQSLSYLDGSLPGDYGFDPLGLS-DPEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAP 122
Query: 117 EVLEKWLRVDFKEP--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
EVL L + +E VW+KAG I ++G DY NP + LM E
Sbjct: 123 EVLGG-LGIIPQETGLVWYKAG-MIPAQGTYDYWANP--------FTIFWINAALMNFAE 172
Query: 175 GFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
R PG G G YPGG +F+ +G A+++VKEIK
Sbjct: 173 LRRAQDYWNPGSMGKQELIGWEKMLGGSGEPAYPGG-FFNIMGQGKS--DMAKMRVKEIK 229
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWV 259
NGRLAM + F QA++TG+GP++NL+DH+ +P +N V
Sbjct: 230 NGRLAMMACFACGAQAVMTGEGPVKNLIDHVSDPFGHNLLV 270
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 105/204 (51%), Gaps = 32/204 (15%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
+ P +L G PGD+G+D GL ++PE E++H RWAMLGA G PE+L K
Sbjct: 68 STAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIG 127
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
++ P W+ AG Q + Q+ L ++ +++ MG EG R +
Sbjct: 128 ILN--TPSWYTAGEQTY-------------FADQTTLFIV--ELLFMGWAEGRRWADILK 170
Query: 184 VGE-------------GNDL-YPGGQYFDPLGL-ADDPVTFAELKVKEIKNGRLAMFSMF 228
G G D+ YPGG +FDPLG A EL+ KEIKNGRLAM ++
Sbjct: 171 PGSVNTDPVFPNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAMLAVM 230
Query: 229 GFFVQAIVTGKGPLENLLDHLENP 252
G + QA+ TG GP++NL HL +P
Sbjct: 231 GAWFQAVYTGTGPIDNLFAHLADP 254
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 111/215 (51%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL++DPE+ N E++H RWAMLGA G
Sbjct: 74 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG 131
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K ++ P W+ AG L+Y + + L ++ ++ +G
Sbjct: 132 IFIPEFLTKIGILN--TPSWYTAGE-------LEYFTD------TTTLFIV--ELFFIGW 174
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 175 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 234
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 235 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 116/226 (51%), Gaps = 35/226 (15%)
Query: 50 WYGPDRVKYL--GPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
WYGP+R YL G + A PSYL G GDYG+D GL AD + R E++H RWA
Sbjct: 93 WYGPNRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGADGKV-KDYRVAEILHARWA 151
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
ML G + PE L + VW + G ++F +G G +++ I A + Q
Sbjct: 152 MLAVPGVVIPEAL------NIPGGVWTETG-KVFLDG---ETGRDSILEFWPIYAAI--Q 199
Query: 167 VVLMGLVEGFRINGLPGVG-------------EGND-LYPGG--QYFDPLGLADDPVTFA 210
VVLMG E FR +G+ G G D + PGG +FD +A +P
Sbjct: 200 VVLMGGAEKFRQDGVGPAGFVPFKGKFEESAFNGLDPVNPGGPLDFFD---VAKNPQDLQ 256
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LKVKEIKNGRLAM +M G FVQ VTG+GP N H+ NP N
Sbjct: 257 ILKVKEIKNGRLAMIAMLGVFVQGAVTGEGPAANWGKHVANPFGYN 302
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 110/215 (51%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G
Sbjct: 63 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K ++ P W+ AG L+Y + + L V+ ++ +G
Sbjct: 121 IFIPEFLTKIGILN--TPSWYTAGE-------LEYFTD------TTTLFVV--ELFFIGW 163
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 164 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 223
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 99/190 (52%), Gaps = 35/190 (18%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YLTGEFPGD G+D AGLSADPE F R R E+IHGR AML +G + P+ L K
Sbjct: 95 PAYLTGEFPGDRGFDPAGLSADPETFDRMRIAEIIHGRVAMLAVVGALVPDFLGKG---- 150
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
WF+A A G+D +G+ +LG+ V G GL
Sbjct: 151 ----NWFEAPAI----AGID-IGDVQQF-------ILGYGVFEFG-------RGLNKSSN 187
Query: 187 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 246
+YPG FDPL L D K EIKNGRLA+ +M GF VQ V G PL NL
Sbjct: 188 PAAIYPG---FDPLNLTSD-----YTKEAEIKNGRLALTAMLGFEVQRHVVGGSPLANLS 239
Query: 247 DHLENPVANN 256
DHL+ P+ N
Sbjct: 240 DHLQQPLKFN 249
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 100/193 (51%), Gaps = 18/193 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G PGD+G+D GL PE R + E+IH RWAML G + PE L
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYG---- 110
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR-INGLPGV 184
W KA GG YLGNP V ++ +L + + + VE R + P
Sbjct: 111 ----NWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP-- 162
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP F ELKVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 163 --EKKKYPGGA-FDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219
Query: 244 NLLDHLENPVANN 256
NL HL +P N
Sbjct: 220 NLATHLADPWHKN 232
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL +DPE E++H RWAMLGA G PE+ K L +
Sbjct: 83 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELCTK-LGI- 140
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG L+Y + ++ L V+ +++ +G EG R + G
Sbjct: 141 LNTPSWYTAGE-------LEYFTD------KTTLFVV--EMIFLGWAEGRRWADILEPGS 185
Query: 187 -------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 186 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 245
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QA TG GP++NLL HL +P
Sbjct: 246 FQAEYTGTGPIDNLLAHLADP 266
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 99/192 (51%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 57 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLG---- 112
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLGNP V ++ +L + + + VE R +
Sbjct: 113 ----NWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAISFVEHQR--SMEKDP 164
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
E YPGG FDPLG + DP TF E KVKEIKNGRLA+ + GF V Q+ G GPLEN
Sbjct: 165 EKKK-YPGGA-FDPLGYSKDPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 222
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 223 LAAHLADPWHNN 234
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 110/215 (51%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE+ N E++H RWAMLGA G
Sbjct: 74 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 131
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K ++ P W+ AG L+Y + + L V+ ++ +G
Sbjct: 132 IFIPEFLTKIGILN--TPSWYTAGE-------LEYFTD------TTTLFVV--ELFFIGW 174
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 175 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 234
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 235 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 115/264 (43%), Gaps = 68/264 (25%)
Query: 33 KDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE-- 90
K P +AK T LWY A+ P +L G GDYG+D GL E
Sbjct: 37 KKSAPKRSAKPTSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYL 86
Query: 91 -----------------------------------------AFARNRALEVIHGRWAMLG 109
R R E+IHGRWAML
Sbjct: 87 QFELDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLA 146
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
LG +T E WL W AG EG YLG P SI ++ +V++
Sbjct: 147 TLGALTVE----WL----TGVTWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLV 194
Query: 170 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
+G +E R + L LYPGG++FDPLGLA+DP A L++ EIK+ RLAM + G
Sbjct: 195 IGYIEFQRNSEL---DPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHARLAMVAFLG 251
Query: 230 FFVQAIVTGKGPLENLLDHLENPV 253
F VQA VTGKGPL N HL +P+
Sbjct: 252 FAVQAAVTGKGPLNNWATHLSDPL 275
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 107/225 (47%), Gaps = 46/225 (20%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE E++H RWAML G
Sbjct: 22 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAG 79
Query: 113 CITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
+ PE LE R+ F E W+ AGAQ ++ +P + Q+ LMG
Sbjct: 80 ILIPECLE---RLGFIENFSWYDAGAQ-------EFFADPTTLFV--------VQLALMG 121
Query: 172 LVEGFRINGL-------------------PGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
VEG R L P VG YPGG +FDP P
Sbjct: 122 WVEGRRWADLINPGCVDIQLTFPNKAKPKPDVG-----YPGGLWFDPFMWGRGSPEPVMV 176
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF QAI TG+GP+ENL+ H+ +P N
Sbjct: 177 LRTKEIKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCN 221
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 106/215 (49%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE N E++H RWAMLGA G
Sbjct: 65 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 122
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K ++ P W+ AG L+Y + + ++ +G
Sbjct: 123 IFIPEFLTKIGILN--TPSWYTAGE-------LEYFTDTTTLFI--------VELFFIGW 165
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 166 AEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 225
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 226 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 260
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 108/220 (49%), Gaps = 36/220 (16%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE E++H RWAML G
Sbjct: 90 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAG 147
Query: 113 CITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
+ PE LE + F E WF AGA+ +Y +P + Q+VLMG
Sbjct: 148 ILIPEWLES---LGFIENYNWFDAGAR-------EYFADPT--------TLFIVQLVLMG 189
Query: 172 LVEGFRINGL--PGVGEGNDL------------YPGGQYFDPLGLAD-DPVTFAELKVKE 216
VEG R + PG + YPGG +FDPL P L+ KE
Sbjct: 190 WVEGRRWADMIKPGCVDIEPTLPNKTKPKPDVGYPGGLWFDPLMWGRGSPEPVMVLRTKE 249
Query: 217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
IKNGRLAM + GF QA+ TG+GP+ENL+ H+ +P N
Sbjct: 250 IKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCN 289
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 135/283 (47%), Gaps = 35/283 (12%)
Query: 1 MASIMAAATASSSTSLRATPFLGQSRTT--ANALKDVVPMGNAKYTMGNELWYGPDRVKY 58
MAS+ A A + +A L + + P AK T ++ D V Y
Sbjct: 1 MASLFAKTQALQGLTTKAPKSLRRQVVVRAEGEQQPPAPAAEAKQTSVAKVDRSKD-VLY 59
Query: 59 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA--------FARNRAL---EVIHGRWAM 107
+G +A YL G PGDYG+D GL DP F R L EVIH RWAM
Sbjct: 60 VGSDAAAL-KYLDGTLPGDYGFDPLGL-LDPTVSNGQGAGGFVNPRWLQYSEVIHARWAM 117
Query: 108 LGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGL--DYLGNPNLVHAQSILAVLG 164
LGA GCI PE+L K + + V WF+ G + G+ D+ +P + + V+
Sbjct: 118 LGAAGCIAPEILGKAGVIPAETAVDWFRTG--VIPPAGVYKDFWADPFTLF---FIEVVA 172
Query: 165 FQVVLMGLVEGFR---------INGLPGVGEGND--LYPGGQYFDPLGLADDPVTFAELK 213
Q + ++ ++ GL G+ +G+D YPGG +F+ +LK
Sbjct: 173 IQFAELKRLQDYKNPGSQSRQYFLGLEGLFKGSDNPAYPGGPFFNFANFGKTEAEMKKLK 232
Query: 214 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+ EIKNGRLAM +MFG+ QA++TG GP +NLL HL +P N
Sbjct: 233 LNEIKNGRLAMLAMFGYGAQAVITGDGPFDNLLAHLADPTGAN 275
>gi|159480944|ref|XP_001698542.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
gi|158282282|gb|EDP08035.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
Length = 237
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 111/232 (47%), Gaps = 40/232 (17%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPE----AFARNRAL---EVIHGRWAMLGALGCIT 115
S + SYL G PGD G+D GL DP F R L EV+HGRWAMLGA GC+
Sbjct: 14 SVSSLSYLDGTLPGDMGFDPLGLF-DPTNGSAGFMSQRWLHTAEVVHGRWAMLGAAGCLA 72
Query: 116 PEVLEKWLRVDFKEP--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLV 173
PE L +V K +WFK G G DY G P + A+ Q+ LMG V
Sbjct: 73 PEYLAHE-KVIPKATGLLWFKTGFLPPVSAGFDY-GLP-------VTALFLIQMGLMGTV 123
Query: 174 EGFRINGL--PGVGEGNDL------------------YPGGQYFDPLGL-ADDPVTFAEL 212
E R L PG N L YPGG F+PLGL A P E
Sbjct: 124 ESLRWAELSNPGSLASNPLVPQPLARLIGTTRLGGGAYPGGLMFNPLGLGATRPAVMREY 183
Query: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
+ EI++GRLAM + G+ QA+VTGKGP N + HLE+P N V K
Sbjct: 184 QQSEIRHGRLAMVACLGYAAQAVVTGKGPYTNWVAHLEDPDIENVVVLLDKL 235
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 102/195 (52%), Gaps = 22/195 (11%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE--K 121
+ P++L + PG+YG+D L +P + R EVIHGRWAMLG G + E+L
Sbjct: 43 SDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGN 102
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
W + P+W G + + G++ + N A+L F+ V M EG R +
Sbjct: 103 W----YDAPLWAVNGGKA-TWFGIEVPFDLN--------ALLAFEFVAMAAAEGQRGD-- 147
Query: 182 PGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
G +YPGG FDPLG A D ELK+KEIKNGRLAM + GF Q TGKGP
Sbjct: 148 ----AGGVVYPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGP 202
Query: 242 LENLLDHLENPVANN 256
+ L +HL NP N
Sbjct: 203 IAALGEHLANPWGAN 217
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 99/194 (51%), Gaps = 18/194 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV--LEKWLR 124
P++L G PGD+G+D GL+ PE F R + E+ H RWAML G + PE L W++
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 116
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
W +G YLGNP V ++ +L + + + E R
Sbjct: 117 AQ----EW-----AALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTM---EK 162
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP F ELK+KEIKNGRLAM + GF V Q+ G GPLE
Sbjct: 163 DPEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLE 221
Query: 244 NLLDHLENPVANNA 257
N HL +P N +
Sbjct: 222 NPGTHLADPWHNTS 235
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 106/218 (48%), Gaps = 30/218 (13%)
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRAL--------EVIHGRWAMLGALGCITPEVL 119
SYLTG PGD+GWD L+ + N A+ EVIHGRWAMLGA G ++PEVL
Sbjct: 127 SYLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVIHGRWAMLGAAGALSPEVL 186
Query: 120 EKWLRVDFKEP--VWFKAGAQIFSEG--GLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
K V KE WF+AG S + + G + +L +V MG E
Sbjct: 187 GK-AGVIPKETGLTWFQAGGLDSSSNLIAVPFTGPIPFQYWTDQYTLLFTMLVAMGFAET 245
Query: 176 FRINGLPGVG----------------EGNDLYPGGQYFDPLGL-ADDPVTFAELKVKEIK 218
R G YPGG +F+ GL A D ELKVKEI+
Sbjct: 246 RRWQEYKEPGSVQKQFFLGLEKLTPPSQQPAYPGGGFFNFAGLGAKDEKQMFELKVKEIR 305
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
NGRLAM + GF VQA VT GP +NLLDH+ +P A N
Sbjct: 306 NGRLAMLAFLGFMVQAEVTHVGPFQNLLDHINSPGAQN 343
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G P D+G+D GL ++PE E++H RWAMLGA G PE L K L +
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTK-LGI- 130
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG Q +Y + Q+ L ++ +++L+G EG R + G
Sbjct: 131 LNTPFWYTAGEQ-------EYFTD------QTTLFIV--EMILLGWAEGRRWADILKPGS 175
Query: 187 -------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDP G P EL+ KEIKNGRLAM ++ G +
Sbjct: 176 VNTDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAW 235
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QA+ TG P++NLL HL +P
Sbjct: 236 FQAVYTGARPIDNLLAHLADP 256
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 107/218 (49%), Gaps = 33/218 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S+Q YL G PGD+G+D GL DPE F L EVIH RWAMLG G + P
Sbjct: 57 SSQALGYLDGTLPGDFGFDPLGL-CDPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAP 115
Query: 117 EVLEKW--LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
EVL + +E VWF++G I G + + + ++M E
Sbjct: 116 EVLATIGAIPASPEEAVWFRSGV-IPPAGQYG-------AYWTDAYTLFWVEAIMMNFAE 167
Query: 175 GFRIN--------------GLPGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
R GL V G GN YPGGQ+F+ L L P +L+ EI+
Sbjct: 168 LKRWQDYQSPGSQGKQYFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIR 227
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
NGRLAM + G F QA++T KGP NLLDHL +P++NN
Sbjct: 228 NGRLAMIACLGCFGQAVMTTKGPFANLLDHLADPISNN 265
>gi|168998334|gb|ACA42563.1| hypothetical protein [Camellia sinensis]
Length = 81
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 68/99 (68%), Gaps = 18/99 (18%)
Query: 170 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
MG VEG+RI G PLG DP+ + ELKVKEIKNGRLAMFSMFG
Sbjct: 1 MGAVEGYRIAG-----------------GPLGEVTDPL-YPELKVKEIKNGRLAMFSMFG 42
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
FFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 43 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 81
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 109/215 (50%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE N E++H RWAMLGA G
Sbjct: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K ++ P W+ AG L+Y + + L ++ ++ +G
Sbjct: 120 IFIPEFLTKIGILN--TPSWYTAGE-------LEYFTD------TTTLFIV--ELFFIGW 162
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 163 AEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 222
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 103/205 (50%), Gaps = 36/205 (17%)
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
+P YL G GDYG+D GL DPE+ E++H R+AMLG G + ++L RV
Sbjct: 69 SPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTDLL----RV 124
Query: 126 D--FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
K PVW++AGA + +++L V Q++ MG E R
Sbjct: 125 TGIRKLPVWYEAGAVKY-----------EFASTRTLLVV---QLLWMGYAETRRYMDYVS 170
Query: 184 VGEGNDL----------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
G N YPGG +P GLA D + + K+KEIKNGRLAM +M
Sbjct: 171 PGSQNKEGSFFGMEAALEGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGRLAMVAM 230
Query: 228 FGFFVQAIVTGKGPLENLLDHLENP 252
G FVQA VT GP++NLL+HL +P
Sbjct: 231 LGIFVQAAVTHTGPIDNLLEHLSDP 255
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 102/195 (52%), Gaps = 22/195 (11%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE--K 121
+ P++L + PG+YG+D L +P + R EVIHGRWAMLG G + E+L
Sbjct: 39 SDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGN 98
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
W + P+W G + + G++ + N A+L F+ V M EG R +
Sbjct: 99 W----YDAPLWAVNGGKA-TWFGIEVPFDLN--------ALLAFEFVAMAAAEGQRGD-- 143
Query: 182 PGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
G +YPGG FDPLG A D ELK+KEIKNGRLAM + GF Q TGKGP
Sbjct: 144 ----AGGVVYPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGP 198
Query: 242 LENLLDHLENPVANN 256
+ L +HL NP N
Sbjct: 199 IAALGEHLANPWGAN 213
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 101/195 (51%), Gaps = 22/195 (11%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE--K 121
+ P++L + PG+YG+D L DP + R EVIHGRWAMLG G + E+L
Sbjct: 7 SDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGN 66
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
W + P+W G + + G+D + N +L F+ V M EG R +
Sbjct: 67 W----YDAPLWAVNGGKA-TWFGIDVPFDLN--------TLLAFEFVAMAAAEGQRGD-- 111
Query: 182 PGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
G +YPGG FDPLG A D ELK+KE+KNGRLAM + GF Q TGKGP
Sbjct: 112 ----AGGVVYPGGA-FDPLGFAKDASKSGELKLKEVKNGRLAMVAFLGFVAQHAATGKGP 166
Query: 242 LENLLDHLENPVANN 256
+ L +HL NP N
Sbjct: 167 IAALGEHLSNPWGAN 181
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G P D+G+D GL ++PE E++H RWAMLGA G PE L K L +
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTK-LGI- 130
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG Q +Y + Q+ L ++ +++L+G EG R + G
Sbjct: 131 LNTPFWYTAGEQ-------EYFTD------QTTLFIV--EMILLGWAEGRRWADILKPGS 175
Query: 187 -------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDP G P EL+ KEIKNGRLAM ++ G +
Sbjct: 176 VNTDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAW 235
Query: 232 VQAIVTGKGPLENLLDHLENP 252
QA+ TG P++NLL HL +P
Sbjct: 236 FQAVYTGARPIDNLLAHLADP 256
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 98/192 (51%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLG---- 110
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLGNP V ++ VL + + + VE R +
Sbjct: 111 ----NWVKAQEWAALPGGQATYLGNP--VPRGTLPTVLAIEFLAISFVEHQR--SMEKDP 162
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLEN
Sbjct: 163 EKKK-YPGGA-FDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 220
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 221 LATHLADPWHNN 232
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 98/193 (50%), Gaps = 18/193 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILIPEALGLG---- 110
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR-INGLPGV 184
W KA + GG YLG P V ++ VL + V + VE R + P
Sbjct: 111 ----NWVKAQEWAAAPGGQATYLGQP--VPWGTLPTVLAIEFVAIAFVEHQRSMEKDP-- 162
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 163 --EKKKYPGGA-FDPLGFSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219
Query: 244 NLLDHLENPVANN 256
NL HL +P NN
Sbjct: 220 NLATHLADPWHNN 232
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 101/202 (50%), Gaps = 32/202 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G GD+G+D GL DPE E++H R+AM G G + ++L +
Sbjct: 66 PPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRVTGISN 125
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------- 179
PVW++AGA F S A+ Q++LMG VE R
Sbjct: 126 L--PVWYEAGAVKF--------------EFASTEALFIVQLILMGFVETKRYMDFTNPGS 169
Query: 180 --------GLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 230
GL EG + YPGG +PLGLA D + K+KEIKNGRLAM +M G
Sbjct: 170 QAKEGSFFGLEAALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGRLAMVAMLGV 229
Query: 231 FVQAIVTGKGPLENLLDHLENP 252
FVQA VT GP+ENL++HL NP
Sbjct: 230 FVQASVTHAGPIENLVEHLSNP 251
>gi|157965827|gb|ABW06950.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 610
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 102/199 (51%), Gaps = 49/199 (24%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL------E 120
P+YLTGEFP D G+D AGL+ADP+ + R R EV +GR AML +GC+ PE+L E
Sbjct: 259 PAYLTGEFPADRGFDPAGLAADPKVYERMRIAEVFNGRLAMLAIVGCVYPELLGNGVWFE 318
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
W +VDF A++ QVV +E +R NG
Sbjct: 319 VWNKVDFYR------------------------------FALISLQVV--APLEYWRGNG 346
Query: 181 ---LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G + + YPG FDP L T K EIKNGRLAM MFG VQ+ VT
Sbjct: 347 GFGWDGEEKYDRSYPG---FDPCNL-----TTEYTKAAEIKNGRLAMIGMFGLEVQSHVT 398
Query: 238 GKGPLENLLDHLENPVANN 256
+GP+ NL++HL +P+A N
Sbjct: 399 AQGPVANLMEHLRHPLAAN 417
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 95/198 (47%), Gaps = 42/198 (21%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A P++LTGE+P D G+D L+ADP +AR R EV H R +ML +G I PEVL K
Sbjct: 73 ATPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVLGK-- 130
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF-QVVLMGLVEGFRINGLP 182
WF+AG + G+ LGF + + E +R NG
Sbjct: 131 ------GAWFEAGNSV---DGIK----------------LGFIAMAIAAPTEYWRGNG-- 163
Query: 183 GV----GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G G + YPG FDPL L D K EIKNGRLAM + G Q + TG
Sbjct: 164 GFNWDKGAADRSYPG---FDPLKLTTD-----YTKAAEIKNGRLAMAGLLGLTFQYLATG 215
Query: 239 KGPLENLLDHLENPVANN 256
+ PL NL HL NPV N
Sbjct: 216 ESPLANLAAHLANPVGTN 233
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 95/198 (47%), Gaps = 42/198 (21%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A P++LTGE+P D G+D L+ADP +AR R EV H R +ML +G I PEVL K
Sbjct: 444 ATPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVLGK-- 501
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF-QVVLMGLVEGFRINGLP 182
WF+AG + G+ LGF + + E +R NG
Sbjct: 502 ------GAWFEAGNSV---DGIK----------------LGFIAMAIAAPTEYWRGNG-- 534
Query: 183 GV----GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G G + YPG FDPL L D K EIKNGRLAM + G Q + TG
Sbjct: 535 GFNWDKGAADRSYPG---FDPLKLTTD-----YTKAAEIKNGRLAMAGLLGLTFQYLATG 586
Query: 239 KGPLENLLDHLENPVANN 256
+ PL NL HL NPV N
Sbjct: 587 ESPLANLAAHLANPVGAN 604
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
K EIKNGRLA+ +M G VQ VTG PL NL++H+++P+ +N
Sbjct: 2 KEAEIKNGRLALTAMLGLEVQRHVTGVSPLVNLVEHVKHPLGHN 45
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 107/204 (52%), Gaps = 36/204 (17%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G GD+G+D GL+ DP + E++H R+AMLG G + ++L RV
Sbjct: 64 PPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLL----RVT 119
Query: 127 --FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
K PVWF+AGA + + + +++ V Q+VLMG VE R
Sbjct: 120 GISKIPVWFEAGAVKY-----------DFANTKTLFLV---QLVLMGFVETKRYMDFVSP 165
Query: 185 G----EGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
G EG+ YPGG +PLGLA D + K+KEIKNGRLAM +M
Sbjct: 166 GSQAKEGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAML 225
Query: 229 GFFVQAIVTGKGPLENLLDHLENP 252
G FVQA VT GP++NL++HL NP
Sbjct: 226 GIFVQASVTHVGPIDNLVEHLSNP 249
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 99/191 (51%), Gaps = 14/191 (7%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G PGD+G+D L PE R + E+IH RWAML G + PE L V
Sbjct: 12 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQ 71
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
+E W G YLGNP V ++ +L + + + VE R + E
Sbjct: 72 AQE--W-----AAIPGGQATYLGNP--VPWGNLPTILAIEFLAIAFVEHQR--SMEKDTE 120
Query: 187 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENL 245
YPGG FDPLG + DPV F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 121 KKK-YPGGA-FDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENL 178
Query: 246 LDHLENPVANN 256
HL +P NN
Sbjct: 179 ASHLADPWHNN 189
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 119/259 (45%), Gaps = 55/259 (21%)
Query: 26 RTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGL 85
RT ANA K V + PDR + + P +L G PGD+G+D GL
Sbjct: 36 RTIANATKGVSAVCEP---------LPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGL 84
Query: 86 SADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGG 144
+DPE E++H RWAML G + PE+LE R+ + E W+ AG +
Sbjct: 85 GSDPELLKWFAQAELMHSRWAMLAVFGILVPELLE---RIGYIENFSWYDAGTR------ 135
Query: 145 LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR-------------------INGLPGVG 185
+Y +P + Q+ LMG VEG R N P VG
Sbjct: 136 -EYFVDPTTLFV--------VQMGLMGWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVG 186
Query: 186 EGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 244
YPGG +FDP+ P L+ KEIKNG LAM + GF+ QAI TG+GP+EN
Sbjct: 187 -----YPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGGLAMLAFVGFWFQAIYTGEGPIEN 241
Query: 245 LLDHLENPVANNAWVYATK 263
L+ HL +P N + T+
Sbjct: 242 LMAHLADPGHCNIFSAFTR 260
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 98/192 (51%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLG---- 110
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLGNP V ++ VL + + + VE R +
Sbjct: 111 ----NWVKAQEWAALPGGQATYLGNP--VPWGTLPTVLAIEFLAISFVEHQR--SMEKDP 162
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLEN
Sbjct: 163 EKKK-YPGGA-FDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 220
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 221 LATHLADPWHNN 232
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 104/208 (50%), Gaps = 36/208 (17%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL +P E++H R+AM G G + + ++RV
Sbjct: 64 PPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATD----FIRVS 119
Query: 127 --FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR----ING 180
PVWF+AGA F D+ + A+ Q++LMG E R IN
Sbjct: 120 GINNLPVWFEAGATKF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINP 165
Query: 181 LPGVGEGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
EG L YPGG F+PLGLA D E K+KEIKNGRLAM +M
Sbjct: 166 GSQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAML 225
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANN 256
GF VQA VT GP++NLL HL +P N
Sbjct: 226 GFIVQASVTHVGPIDNLLTHLSDPFNKN 253
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 109/215 (50%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE N E++H RWAMLGA G
Sbjct: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K + + P W+ AG ++Y + + L ++ ++ +G
Sbjct: 120 IFIPEFLTK-IGI-LNTPSWYSAGE-------VEYFTD------TTTLFIV--ELFFIGW 162
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 163 AEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 222
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 109/215 (50%), Gaps = 34/215 (15%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE N E++H RWAMLGA G
Sbjct: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
PE L K + + P W+ AG ++Y + + L ++ ++ +G
Sbjct: 120 IFIPEFLTK-IGI-LNTPSWYSAGE-------VEYFTD------TTTLFIV--ELFFIGW 162
Query: 173 VEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEI 217
EG R + PG G D+ YPGG +FDPLG P EL+ KEI
Sbjct: 163 AEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 222
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
KNGRLAM ++ G + Q I TG GP++NL HL +P
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 97/192 (50%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G PGD+G+D GL+ PE F R + EV H RWAML G + PE L
Sbjct: 7 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLG---- 62
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLG P V ++ +L + V + E R
Sbjct: 63 ----NWVKAQEWAAVPGGQATYLGAP--VPWGTLPTILVIEFVAIAFAEHQRTM---EKD 113
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
YPGG FDPLG + DP F E K+KEIKNGRLAM + GF V Q+ G GPLEN
Sbjct: 114 PEKKKYPGGA-FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLEN 172
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 173 LASHLADPWHNN 184
>gi|157965823|gb|ABW06948.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 582
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 102/199 (51%), Gaps = 49/199 (24%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL------E 120
P+YLTGEFP D G+D AGL+ADP+ + R R EV +GR AML +GC+ PE+L E
Sbjct: 229 PAYLTGEFPADRGFDPAGLAADPKVYERMRIAEVFNGRLAMLAIVGCVYPELLGNGVWFE 288
Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
W +VDF A++ QVV +E +R NG
Sbjct: 289 VWNKVDFYR------------------------------FALISLQVV--APLEYWRGNG 316
Query: 181 ---LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G + + YPG FDP L T K EIKNGRLAM MFG VQ+ VT
Sbjct: 317 GFGWDGEEKYDRSYPG---FDPCNL-----TTEYTKAAEIKNGRLAMIGMFGLEVQSHVT 368
Query: 238 GKGPLENLLDHLENPVANN 256
+GP+ NL++HL +P+A N
Sbjct: 369 AQGPVANLIEHLRHPLAAN 387
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 95/198 (47%), Gaps = 42/198 (21%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A P++LTGE+P D G+D L+ADP +AR R EV H R +ML +G I PEVL K
Sbjct: 43 ATPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVLGK-- 100
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF-QVVLMGLVEGFRINGLP 182
WF+AG + G+ LGF + + E +R NG
Sbjct: 101 ------GAWFEAGNSV---DGIK----------------LGFIAMAIAAPTEYWRGNG-- 133
Query: 183 GV----GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G G + YPG FDPL L D K EIKNGRLAM + G Q + TG
Sbjct: 134 GFNWDKGAADRSYPG---FDPLKLTTD-----YTKAAEIKNGRLAMAGLLGLTFQYLATG 185
Query: 239 KGPLENLLDHLENPVANN 256
+ PL NL HL NPV N
Sbjct: 186 ESPLANLAAHLANPVGAN 203
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 94/198 (47%), Gaps = 42/198 (21%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A P++LTGE+P D G+D L+ADP +AR R EV H R ML +G I PEVL K
Sbjct: 416 ATPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLCMLAIVGAIVPEVLGK-- 473
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF-QVVLMGLVEGFRINGLP 182
WF+AG + G+ LGF + + E +R NG
Sbjct: 474 ------GAWFEAGNSV---DGIK----------------LGFIAMAIAAPTEYWRGNG-- 506
Query: 183 GV----GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G G + YPG FDPL L D K EIKNGRLAM + G Q + TG
Sbjct: 507 GFNWDKGAADRSYPG---FDPLKLTTD-----YTKAAEIKNGRLAMAGLLGLTFQYLATG 558
Query: 239 KGPLENLLDHLENPVANN 256
+ PL NL HL NPV N
Sbjct: 559 ESPLANLAAHLANPVGAN 576
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 100/205 (48%), Gaps = 33/205 (16%)
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
P YL GE GDYGWD GL ADP A R E++H RWAMLG G + EV+
Sbjct: 41 APDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEVV------ 94
Query: 126 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
K V+ F E GL P ++ +L ++ +LM VE R G
Sbjct: 95 --KPDVY-------FYEAGLPQ-NLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNFG 144
Query: 186 --------EGNDL------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 231
+GN + YPGG FDPLG + EL+ KEIKNGRLAM + GF
Sbjct: 145 SVNEDPIFKGNKVPNPEMGYPGG-IFDPLGFSKG--NLKELQTKEIKNGRLAMVAYMGFV 201
Query: 232 VQAIVTGKGPLENLLDHLENPVANN 256
+QA TGKGPL L HL NP NN
Sbjct: 202 LQAQATGKGPLAALSAHLSNPFGNN 226
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 104/208 (50%), Gaps = 36/208 (17%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GL +P E++H R+AM G G + +++ RV
Sbjct: 64 PPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLI----RVS 119
Query: 127 --FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR----ING 180
PVWF+AGA F D+ + A+ Q++LMG E R IN
Sbjct: 120 GINNLPVWFEAGATKF-----DF---------ANTTALFFVQLLLMGFAETKRYMDFINP 165
Query: 181 LPGVGEGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
EG L YPGG F+PLGLA D E K+KEIKNGRLAM +M
Sbjct: 166 GSQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAML 225
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANN 256
GF VQA VT GP++NLL HL +P N
Sbjct: 226 GFIVQASVTHVGPIDNLLTHLSDPFNKN 253
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 103/201 (51%), Gaps = 31/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L +
Sbjct: 74 PPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRTTGLSN 133
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR--------- 177
PVW++AGA F + ++ V Q++LMG VE R
Sbjct: 134 L--PVWYEAGATKF-----------QFANTTTLFIV---QMLLMGFVETKRYMDFKNPGS 177
Query: 178 -----INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 231
GL EG + YPGG +PLG+A D E K+KEIKNGRLAM ++ G F
Sbjct: 178 QGEASFFGLEAALEGLEPGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRLAMVAILGIF 237
Query: 232 VQAIVTGKGPLENLLDHLENP 252
VQA VT GPLENL++HL +P
Sbjct: 238 VQASVTHVGPLENLVEHLSDP 258
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 99/193 (51%), Gaps = 18/193 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G PGD+G+D GL P R + E+IH RWAML G + PE L
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG---- 110
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR-INGLPGV 184
W KA GG YLGNP V ++ +L + + + VE R + P
Sbjct: 111 ----NWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP-- 162
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP ELKVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 163 --EKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219
Query: 244 NLLDHLENPVANN 256
NL HL +P NN
Sbjct: 220 NLATHLADPWHNN 232
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 99/193 (51%), Gaps = 18/193 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G PGD+G+D GL P R + E+IH RWAML G + PE L
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG---- 110
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR-INGLPGV 184
W KA GG YLGNP V ++ +L + + + VE R + P
Sbjct: 111 ----NWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP-- 162
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP ELKVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 163 --EKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219
Query: 244 NLLDHLENPVANN 256
NL HL +P NN
Sbjct: 220 NLATHLADPWHNN 232
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G PGD+G+D GL PE F R + EV H RWAML G + PE L
Sbjct: 25 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEAL------- 77
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG Y G P V ++ +L + V + E R
Sbjct: 78 -GLGNWVKAQEWAAVPGGQATYFGVP--VPWGNLPTILAIEFVAIAFAEHQRTM---EKD 131
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
YPGG FDPLG + DPV F E K+KEIKNGRLAM + GF V Q+ G GPLEN
Sbjct: 132 PEKKKYPGGA-FDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLEN 190
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 191 LASHLADPWHNN 202
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 99/193 (51%), Gaps = 18/193 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G PGD+G+D GL P R + E+IH RWAML G + PE L
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG---- 62
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR-INGLPGV 184
W KA GG YLGNP V ++ +L + + + VE R + P
Sbjct: 63 ----NWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP-- 114
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP ELKVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 115 --EKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 171
Query: 244 NLLDHLENPVANN 256
NL HL +P NN
Sbjct: 172 NLATHLADPWHNN 184
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 106/233 (45%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE--------------------------------- 90
A+ P YL G GDYG+D GL E
Sbjct: 58 AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKS 117
Query: 91 ----------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG ++ E WL W AG
Sbjct: 118 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVE----WL----TGVTWQDAGKVEL 169
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
EG YLG P SI A++ + V++G +E F+ N + LYPGGQ+FDPL
Sbjct: 170 VEGS-SYLGQPLPF---SITALIWIEAVIIGYIE-FQRNA--ELDPEKRLYPGGQFFDPL 222
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP A L++ EIK+ RLAM + GF VQA VTGKGPL N HL +P+
Sbjct: 223 GLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSDPL 275
>gi|168046799|ref|XP_001775860.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672867|gb|EDQ59399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 115/217 (52%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GL DPE F + L E+I+GR+AMLGA G I P
Sbjct: 13 SKQSLSYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAP 71
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L + + + + WF++G I G Y +P + ++ LMG E
Sbjct: 72 EILGRIGLIPQETAIPWFQSGV-IPPVGNYSYWADPYTLFV--------LELALMGFAEH 122
Query: 176 FRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G GN YPGG F+ LG + ELK+KEIKN
Sbjct: 123 RRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELKELKLKEIKN 182
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+F+QAI TG GP +NLLDHL +PV NN
Sbjct: 183 GRLAMMAVLGYFIQAIFTGVGPFQNLLDHLADPVHNN 219
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 98/193 (50%), Gaps = 18/193 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV--LEKWLR 124
P++L G PGD+G+D GL+ PE F R + E+ H RWAML G + PE L W++
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVK 116
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
W +G Y G P V ++ +L + + + E R
Sbjct: 117 AQ----EW-----AALPDGQATYFGVP--VPWGNLPTILAIEFLAIAFAEQQRTM---EK 162
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP F ELK+KEIKNGRLAM + GF V Q+ G GPLE
Sbjct: 163 DPEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLE 221
Query: 244 NLLDHLENPVANN 256
NL HL +P NN
Sbjct: 222 NLGAHLADPWHNN 234
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 110/233 (47%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGL--------------------------------SADPEA 91
A++P YL G GDYG+D GL + DP++
Sbjct: 59 AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEAVDPKS 118
Query: 92 -----------FARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG IT E WL W AG
Sbjct: 119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVE----WL----TGVTWQDAGKVEL 170
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
+G YLG P SI ++ +V+++G +E F+ N + LYPGG++FDPL
Sbjct: 171 VDGS-SYLGQP---LPFSISTLIWIEVLVVGYIE-FQRNA--ELDSEKRLYPGGKFFDPL 223
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP A+L++ EIK+ RLAM GF VQA TGKGPL N HL +P+
Sbjct: 224 GLASDPEKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 97/192 (50%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G PGD+G+D L PE R + E+IH WAML G + PE L
Sbjct: 51 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGLG---- 106
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLGNP V ++ +L + + + VE R G
Sbjct: 107 ----NWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAISFVEHQRSMG---KD 157
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
YPGG FDPLG + DP TF E KVKE+KNGRLA+ + GF V Q+ G GPLEN
Sbjct: 158 PEKKKYPGGA-FDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLEN 216
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 217 LAAHLADPWHNN 228
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 110/225 (48%), Gaps = 44/225 (19%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 111
GPDR + P +A P +L G PGD+G+D G ++PE+ E++HGRWAML
Sbjct: 65 GPDRPVWF-PGTA-PPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVA 122
Query: 112 GCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
G + PE+L+KW ++ E W+ AG + +Y +P + Q+ LMG
Sbjct: 123 GILIPEILQKWGFME--EFSWYTAGER-------EYFADPWTLFVT--------QMALMG 165
Query: 172 LVEGFRI-------------------NGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
VEG R N P VG YPGG +FD P
Sbjct: 166 WVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVG-----YPGGLWFDWGNWGRGSPEPVMV 220
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF+ Q + TG+GPL+NL HL +P N
Sbjct: 221 LRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCN 265
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 110/225 (48%), Gaps = 44/225 (19%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 111
GPDR + P +A P +L G PGD+G+D G ++PE+ E++HGRWAML
Sbjct: 62 GPDRPVWF-PGTA-PPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVA 119
Query: 112 GCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
G + PE+L+KW ++ E W+ AG + +Y +P + Q+ LMG
Sbjct: 120 GILIPEILQKWGFME--EFSWYTAGER-------EYFADPWTLFVT--------QMALMG 162
Query: 172 LVEGFRI-------------------NGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
VEG R N P VG YPGG +FD P
Sbjct: 163 WVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVG-----YPGGLWFDWGNWGRGSPEPVMV 217
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF+ Q + TG+GPL+NL HL +P N
Sbjct: 218 LRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCN 262
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 97/199 (48%), Gaps = 30/199 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL------- 119
P++L G PGD+G+D GL PE R + E+IH RWAML G + PE L
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVE 116
Query: 120 -EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
+KW + G YLG P V +L + M E R
Sbjct: 117 AQKWAAI---------------PGGQATYLGVP--VPWGYFPIILSIFFLKMAFAESQR- 158
Query: 179 NGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT- 237
NG P + + YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF VQA
Sbjct: 159 NGEPDLEKRK--YPGGA-FDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQASANP 215
Query: 238 GKGPLENLLDHLENPVANN 256
G GPLENL HL +P N
Sbjct: 216 GTGPLENLATHLSDPWHKN 234
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 99/199 (49%), Gaps = 30/199 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL------- 119
P +L G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 56 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWVE 115
Query: 120 -EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
+KW + G+Q Y G P V + VL + + + VE R
Sbjct: 116 AQKWAAIP---------GSQA------TYFGVP--VPWGYLPIVLAVEFLAIAFVESQR- 157
Query: 179 NGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT- 237
NG P + YPGG FDPLG + DPV F E KVKEIKNGRLA+ + GF VQA
Sbjct: 158 NGEPDPEKRK--YPGGA-FDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANP 214
Query: 238 GKGPLENLLDHLENPVANN 256
G GPLENL HL +P N
Sbjct: 215 GTGPLENLATHLSDPWHRN 233
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 130/277 (46%), Gaps = 51/277 (18%)
Query: 5 MAAATASSSTSLRA--TPFLGQSRTTANAL---------KDVVPMGNAKYTMGNELWY-- 51
MA+A ASS+ + A TP GQ + K+ +G +MG +
Sbjct: 1 MASACASSAITAVAISTPSSGQKNGSGGCFLSGRKLRVKKERAAIGG--RSMGTTVCAVA 58
Query: 52 GPDRVKYLGPFSAQTPS-YLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGA 110
PDR + F TP +L G PGD+G+D GL +DPE+ N E++H RWAMLGA
Sbjct: 59 EPDRPLW---FPGSTPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGA 115
Query: 111 LGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLM 170
G PE L K + V P W+ AG L+Y + + ++ +
Sbjct: 116 AGIFIPEFLTK-IGV-LNTPSWYSAGE-------LEYFTDTTTLFI--------VELFFI 158
Query: 171 GLVEGFRINGL--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVK 215
G EG R + PG G D+ YPGG +FDPLG P +L+ K
Sbjct: 159 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTK 218
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
EIKNGRLAM ++ G + Q I T GP++NL HL +P
Sbjct: 219 EIKNGRLAMLAVMGAWFQHIYTATGPIDNLFAHLADP 255
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G PGD+G+D GL+ PE F R + EV H RWAML G + PE L
Sbjct: 60 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLG---- 115
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLG P V ++ +L + V + E R
Sbjct: 116 ----NWVKAQEWAAVPGGQATYLGAP--VPWGTLPTILAVEFVAIAFAEHQRTM---EKD 166
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
YPGG FDPLG + DP E K+KEIKNGRLAM + GF V Q+ G GPLEN
Sbjct: 167 PEKKKYPGGA-FDPLGFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLEN 225
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 226 LAAHLADPWHNN 237
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 108/245 (44%), Gaps = 58/245 (23%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE--------------------- 90
G D V+ L A+ P YL G GDYG+D GL E
Sbjct: 49 GRDTVRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDI 108
Query: 91 ----------------------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFK 128
R R E+IHGRWAML LG +T E WL
Sbjct: 109 IGTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE----WL----T 160
Query: 129 EPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGN 188
W AG EG YLG P SI ++ + +++G +E F+ N +
Sbjct: 161 GVTWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEALVIGYIE-FQRNA--ELDPEK 213
Query: 189 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 248
LYPGG YFDPLGLA DP A L++ EIK+ RLAM GF VQA VTGKGPL N H
Sbjct: 214 RLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWATH 273
Query: 249 LENPV 253
L +P+
Sbjct: 274 LSDPL 278
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 109/203 (53%), Gaps = 33/203 (16%)
Query: 76 GDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLRVDFKE 129
GD+G+D GLS DPE F + L E+I+GR+AMLGA+G I PE+L K + +
Sbjct: 1 GDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPAET 59
Query: 130 PV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN--GLPGV-- 184
+ WF+ G + G N L VL ++ LMG E R PG
Sbjct: 60 ALPWFQTGV-------IPPAGTYNYWADGYTLFVL--EMALMGFAEHRRFQDWAKPGSMG 110
Query: 185 ------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
G G+ YPGG +F+PLG D + ELK+KE+KNGRLAM ++ G+F+
Sbjct: 111 KQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFI 170
Query: 233 QAIVTGKGPLENLLDHLENPVAN 255
Q +VTG GP +NLLDHL +P N
Sbjct: 171 QGLVTGVGPFQNLLDHLADPWHN 193
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 100/209 (47%), Gaps = 33/209 (15%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
+Q P +L G PGD+G+D GL +DPE E++H RWAMLGA G PE L K
Sbjct: 72 SQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFIPEALTK-- 129
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
P W AG Q + A ++ + +++L EG R +
Sbjct: 130 AGILNTPSWTVAGDQQY------------FTDATTLFVI---EIILFAWAEGRRWADIIN 174
Query: 184 VG-------------EGNDL-YPGGQYFDPLGLAD--DPVTFAELKVKEIKNGRLAMFSM 227
G G D+ YPGG +FDPLG D +L+ +EIKNGRLAM ++
Sbjct: 175 PGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREIKNGRLAMLAV 234
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVANN 256
G VQA T GP++NLL HL +P N
Sbjct: 235 LGAVVQANYTHTGPIDNLLAHLADPGHNT 263
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 105/220 (47%), Gaps = 44/220 (20%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE E++H RWAMLG G
Sbjct: 60 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG 117
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
+ PE+LEK V K W+ AG+ ++Y +P + Q+ LMG
Sbjct: 118 ILIPEILEKIGYV--KNFSWYNAGS-------VEYFADPT--------TLFIVQLALMGW 160
Query: 173 VEGFRI-------------------NGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAEL 212
VEG R N P VG YPGG +FDP+ P L
Sbjct: 161 VEGRRWADIVNPGSVDIEPKLPNRPNPKPDVG-----YPGGLWFDPMQWGRGSPEPVMVL 215
Query: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
+ KEIKNGRLAM + GF QA+ G P++NL+ HL +P
Sbjct: 216 RTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADP 255
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 54 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLG---- 109
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA + GG YLG P V ++ +L + V + VE R +
Sbjct: 110 ----NWVKAQEWAATPGGQATYLGQP--VPWGTLPIILAIEFVAIAFVEHQR--SMEKDT 161
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV-TGKGPLEN 244
E YPGG FDPLG + DP F E KVKEIKNGRLA+ + G VQ G GPLEN
Sbjct: 162 EKKK-YPGGA-FDPLGYSKDPQKFEEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLEN 219
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 220 LATHLADPWHNN 231
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 112/226 (49%), Gaps = 33/226 (14%)
Query: 50 WYGPDRVKYL--GPFSAQT--PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 105
WYG +R YL G T PSY+ G GDYG+D L AD + RA EVIH RW
Sbjct: 82 WYGKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGFDPLKLGADGK-INDYRAAEVIHARW 140
Query: 106 AMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 165
AML G + PE L VW + G ++F +G G P ++ I A G
Sbjct: 141 AMLAIPGIVIPEAL------GIPGGVWTETG-KVFLDG---EAGRPEILQNPIIFA--GI 188
Query: 166 QVVLMGLVEGFRINGL-------PGVGE--GND------LYPGGQYFDPLGLADDPVTFA 210
Q+ L VEG+R + PG G+ G+D + PGG D +A P A
Sbjct: 189 QIALFAAVEGYRSGKVAPPEGFVPGKGKFSGSDFAGLDPINPGGP-LDFFNVASTPEDLA 247
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LKVKEIKNGRLAM +M G FVQ + TG+GP N H+ +P N
Sbjct: 248 ILKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYN 293
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 104/202 (51%), Gaps = 31/202 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G GDYG+D L +P+ E++HGR+AMLGA G I + K V
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAK---VG 96
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 184
P W+ AG + + +D+ P L+ Q + LMG E R PG
Sbjct: 97 LGFPEWYDAGKVVVEKNNIDF---PTLLITQ---------LYLMGWAETKRWYDFKNPGS 144
Query: 185 -GEGNDL------------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGF 230
G+G+ L YPGG++FDP+GL+ D + E K KEIKNGRLAM + GF
Sbjct: 145 QGDGSFLGFTDEFKGLENGYPGGRFFDPMGLSRGDADKYKEYKQKEIKNGRLAMIACLGF 204
Query: 231 FVQAIVTGKGPLENLLDHLENP 252
Q TGKGPL+NL DHL +P
Sbjct: 205 AAQYAATGKGPLDNLADHLADP 226
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 109/226 (48%), Gaps = 33/226 (14%)
Query: 50 WYGPDRVKYLGP----FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 105
WYGP+R YL + PSYL G GDYG+D L D + + RA EVIH RW
Sbjct: 84 WYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDPLQLGKDGKV-EQYRAAEVIHARW 142
Query: 106 AMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 165
AML G + PE L VW + G ++F +G G P ++ + A +
Sbjct: 143 AMLAIPGIVIPEAL------GIPGGVWTETG-KVFLDG---EAGRPEILQNPYLFAAI-- 190
Query: 166 QVVLMGLVEGFRINGLP---------GVGEGND------LYPGGQYFDPLGLADDPVTFA 210
Q+ L VEG+R P G G+D + PGG D +A P A
Sbjct: 191 QIGLFAAVEGYRAGKAPAPDGFVPFKGKFSGSDFSGLDPINPGGP-LDFFNVAATPDDLA 249
Query: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
LKVKEIKNGRLAM +M G FVQ + TG+GP N H+ +P N
Sbjct: 250 VLKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYN 295
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 113/264 (42%), Gaps = 68/264 (25%)
Query: 33 KDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE-- 90
K P +K + LWY A+ P YL G GDYG+D GL E
Sbjct: 38 KKAAPKKFSKPSADRPLWYP----------GAKAPEYLDGSLVGDYGFDPFGLGKPVEYL 87
Query: 91 -----------------------------------------AFARNRALEVIHGRWAMLG 109
R R E+IHGRWAML
Sbjct: 88 QYDLDSLDQNLAKNMAGDIIGTRVESSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLA 147
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
LG ++ E WL W AG EG YLG P SI ++ +V+L
Sbjct: 148 TLGALSVE----WL----TGVTWQDAGKVELVEGS-SYLGQPLPF---SISTLIWIEVLL 195
Query: 170 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
+G +E F+ N + LYPGG++FDPLGLA DP A L++ EIK+ RLAM G
Sbjct: 196 IGYIE-FQRNA--ELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVGFLG 252
Query: 230 FFVQAIVTGKGPLENLLDHLENPV 253
F VQA VTGKGPL N HL +P+
Sbjct: 253 FAVQAAVTGKGPLNNWATHLSDPL 276
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
++ P +L G PGD+G+D GL +DPE E++H RWAMLGA G PE L K
Sbjct: 9 SKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFIPEALTK-- 66
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
P W AG Q Y +P + +++L EG R +
Sbjct: 67 AGILNTPSWNVAGDQ-------QYFADPTTLFV--------IELILFAWAEGRRWADIVN 111
Query: 184 VG-------------EGNDL-YPGGQYFDPLGLAD--DPVTFAELKVKEIKNGRLAMFSM 227
G G D+ YPGG +FDPLG D EL+ KEIKNGRLAM ++
Sbjct: 112 PGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRLAMLAV 171
Query: 228 FGFFVQAIVTGKGPLENLLDHLENPVAN 255
G VQA T GP++NLL HL +P N
Sbjct: 172 LGAVVQANYTHTGPIDNLLAHLADPGHN 199
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 109/225 (48%), Gaps = 44/225 (19%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 111
GPDR + P +A P +L G PGD+G+D G ++PE+ E++HGRWAML
Sbjct: 65 GPDRPVWF-PGTA-PPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVA 122
Query: 112 GCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
G + PE+L+KW ++ E W+ AG + +Y +P + Q+ LMG
Sbjct: 123 GILIPEILQKWGFME--EFSWYTAGER-------EYFADPWTLFVT--------QMALMG 165
Query: 172 LVEGFRI-------------------NGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
VEG R N P VG YPGG +FD P
Sbjct: 166 WVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVG-----YPGGLWFDWGNWGRGSPEPVMV 220
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF+ Q + TG+GPL NL HL +P N
Sbjct: 221 LRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCN 265
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 99/199 (49%), Gaps = 30/199 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL------- 119
P +L G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 17 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWVE 76
Query: 120 -EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
+KW + G+Q Y G P V + VL + + + VE R
Sbjct: 77 AQKWAAI---------PGSQA------TYFGVP--VPWGYLPIVLAVEFLAIAFVESQR- 118
Query: 179 NGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT- 237
NG P + YPGG FDPLG + DPV F E KVKEIKNGRLA+ + GF VQA
Sbjct: 119 NGEPDPEKRK--YPGGA-FDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANP 175
Query: 238 GKGPLENLLDHLENPVANN 256
G GPLENL HL +P N
Sbjct: 176 GTGPLENLATHLSDPWHRN 194
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 97/199 (48%), Gaps = 30/199 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL------- 119
P +L G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVE 116
Query: 120 -EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
+KW + + YLG P V + +L + + + VE R
Sbjct: 117 AQKWAAIPGNQ---------------ATYLGAP--VPWGYLPVILAVEFLSIAFVESQR- 158
Query: 179 NGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT- 237
NG P + YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF VQA
Sbjct: 159 NGEPDPEKRK--YPGGA-FDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANP 215
Query: 238 GKGPLENLLDHLENPVANN 256
G GPLENL HL +P N
Sbjct: 216 GTGPLENLATHLSDPWHKN 234
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 98/199 (49%), Gaps = 30/199 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL------- 119
P +L G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVE 116
Query: 120 -EKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 178
+KW + G Q YLG P V + +L + + + VE R
Sbjct: 117 AQKWAAI---------PGNQA------TYLGAP--VPWGYLPVILAVEFLSIAFVESQR- 158
Query: 179 NGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT- 237
NG P + YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF VQA
Sbjct: 159 NGEPDPEKRK--YPGGA-FDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANP 215
Query: 238 GKGPLENLLDHLENPVANN 256
G GPLENL HL +P N
Sbjct: 216 GTGPLENLATHLSDPWHKN 234
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 107/225 (47%), Gaps = 44/225 (19%)
Query: 52 GPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAL 111
GPDR + P +L G PGD+G+D GL ++PE E++H RWAML
Sbjct: 64 GPDRPVWFP--GTSPPPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAMLAVA 121
Query: 112 GCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
G + PE+L+KW ++ E W+ AG + +Y +P + Q+ LMG
Sbjct: 122 GILIPEILQKWGFME--EFSWYTAGER-------EYFADP--------WTLFIAQMALMG 164
Query: 172 LVEGFRI-------------------NGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
EG R N P VG YPGG +FD P
Sbjct: 165 WAEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVG-----YPGGLWFDWGNWGRGSPEPVMV 219
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF+ QA+ TG+GP++NLL HL +P N
Sbjct: 220 LRTKEIKNGRLAMLAFVGFWFQAVYTGQGPVDNLLAHLADPGHCN 264
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 98/202 (48%), Gaps = 31/202 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G GDYG+D L +P+ E++HGR+AMLGA G I + K V
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAK---VG 96
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG + + +D+ P L + Q LMG E R G
Sbjct: 97 LGFPEWYDAGKVVVEKNNIDF---PTL---------MVIQFYLMGWAETKRWYDFKNPGS 144
Query: 187 GNDL---------------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGF 230
D YPGG++FDP+GL+ D + E K KE+KNGRLAM + GF
Sbjct: 145 QADGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGF 204
Query: 231 FVQAIVTGKGPLENLLDHLENP 252
Q TGKGPL+NL DHL +P
Sbjct: 205 AAQYAATGKGPLDNLADHLADP 226
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 95/192 (49%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G PGD+G+D GL PE F R + EV H RWAML G + PE L
Sbjct: 57 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLG---- 112
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG Y G P V ++ +L + + + E R
Sbjct: 113 ----NWVKAQEWAAVPGGQATYFGVP--VPWGNLPTILAIEFLAIAFAEHQRTM---EKD 163
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
YPGG FDPLG + DPV E K+KEIKNGRLAM + GF V Q+ G GPLEN
Sbjct: 164 PEKKKYPGGA-FDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLEN 222
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 223 LASHLADPWHNN 234
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 97/192 (50%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PSYL G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 56 PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLG---- 111
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLGNP V ++ +L + + + VE R +
Sbjct: 112 ----NWVKAQEWAALPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR--SMEKDP 163
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV-TGKGPLEN 244
E YPGG FDPLG + DP F E K+KE+KNGRLA+ + G VQ G GPLEN
Sbjct: 164 EKKK-YPGGA-FDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYPGTGPLEN 221
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 222 LATHLADPWHNN 233
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 114/222 (51%), Gaps = 40/222 (18%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GLS DPE F + L E+IHGRWAMLG G + P
Sbjct: 55 SEQSLSYLDGSLPGDYGFDPLGLS-DPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAP 113
Query: 117 EVLEKWLRVDFKEP--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
EVL + + +E VWFKAG I ++G DY +P + LM + E
Sbjct: 114 EVLGG-MGIIPQETGLVWFKAG-MIPAQGTYDYWASP--------FTIFWINAFLMNIAE 163
Query: 175 GFRINGL--PGV--------------GEGNDLYPGGQY-FDPLGLADDPVTFAELKVKEI 217
R PG G G+ YPGG + F G D A +K KEI
Sbjct: 164 LRRAQDYWNPGSMGKQDFAGLEKMLGGSGDPAYPGGFFNFMKQGEKD----MAAMKTKEI 219
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWV 259
KNGRLAM + FG QA +TG+GP++NL+DH+ +P +N V
Sbjct: 220 KNGRLAMMACFGCGAQACMTGEGPVKNLVDHVIDPFGHNLLV 261
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 98/203 (48%), Gaps = 31/203 (15%)
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
P++L G GDYG+D L + E E++HGR+AMLGA G I + K V
Sbjct: 39 APAHLDGTLAGDYGFDPLFLGQEKETLRWYVQAELVHGRFAMLGAAGIILTSIGAK---V 95
Query: 126 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
P W+ AG + + +D+ P L+ Q LMG E R G
Sbjct: 96 GLGFPEWYDAGKVVVEKNNIDF---PTLIV---------IQFYLMGWAETKRWYDFKNPG 143
Query: 186 EGNDL---------------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFG 229
D YPGG++FDP+GL+ D +AE K KE+KNGRLAM + G
Sbjct: 144 SQADGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYAEYKQKEVKNGRLAMIACLG 203
Query: 230 FFVQAIVTGKGPLENLLDHLENP 252
F Q TGKGPL+NL DHL +P
Sbjct: 204 FAAQYAATGKGPLDNLSDHLADP 226
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 107/220 (48%), Gaps = 36/220 (16%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE E++H RWAML G
Sbjct: 58 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG 115
Query: 113 CITPEVLEKW-LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
+ PE E L +F W+ AG++ +Y +P +L Q+ LMG
Sbjct: 116 ILLPEWFESLGLIQNFS---WYDAGSR-------EYFADPT--------TLLVAQLALMG 157
Query: 172 LVEGFRINGLPGVGEGN-DL-------------YPGGQYFDPLGLAD-DPVTFAELKVKE 216
VEG R L G + DL YPGG +FDP+ P L+ KE
Sbjct: 158 WVEGRRWADLVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMWGRGSPEPVMVLRTKE 217
Query: 217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
IKNGRLAM + G + QAI TG+GPLENL H+ +P N
Sbjct: 218 IKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCN 257
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PSYL G PGD+G+D GL PE R + E+IH RWAML G + PE L
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL------- 106
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W A + GG YLGNP V ++ +L + + + E R NG P
Sbjct: 107 -GYGNWVSAQKWAATPGGQATYLGNP--VPWGNLPVILAIEFLAIAFAESQR-NGEPDPE 162
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV-TGKGPLEN 244
+ YPGG FDPLG + ELK+KEIKNGRLA+ + GF VQAI G GPLEN
Sbjct: 163 KRK--YPGGA-FDPLGFSKG-ANLEELKLKEIKNGRLALVAFLGFAVQAIAYPGTGPLEN 218
Query: 245 LLDHLENPVANN 256
L HL +P N
Sbjct: 219 LKTHLADPWHNT 230
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 103/233 (44%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE--------------------------------- 90
A+ P YL G GDYG+D GL E
Sbjct: 61 AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKS 120
Query: 91 ----------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG +T E WL W AG
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE----WL----TGVTWQDAGKVEL 172
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
EG YLG P SI ++ +V+++G +E F+ N + LYPGG YFDPL
Sbjct: 173 VEGS-SYLGQPLPF---SITTLIWIEVLVIGYIE-FQRNA--ELDPEKRLYPGGSYFDPL 225
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP A L++ EIK+ RLAM GF VQA TGKGPL N HL +P+
Sbjct: 226 GLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 278
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 98/202 (48%), Gaps = 31/202 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G GDYG+D L +P+ E++HGR+AMLGA G I + K V
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAK---VG 96
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W+ AG + + +D+ P L + Q LMG E R G
Sbjct: 97 LGFPEWYDAGKVVVEKNNIDF---PTL---------MVIQFYLMGWAETKRWYDFKNPGS 144
Query: 187 GNDL---------------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGF 230
D YPGG++FDP+GL+ D + E K KE+KNGRLAM + GF
Sbjct: 145 QADGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGF 204
Query: 231 FVQAIVTGKGPLENLLDHLENP 252
Q TGKGPL+NL DHL +P
Sbjct: 205 AAQYAATGKGPLDNLADHLADP 226
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 107/220 (48%), Gaps = 36/220 (16%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DPE E++H RWAML G
Sbjct: 58 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG 115
Query: 113 CITPEVLEKW-LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
+ PE E L +F W+ AG++ +Y +P +L Q+ LMG
Sbjct: 116 ILLPEWFESLGLIQNFS---WYDAGSR-------EYFADPT--------TLLVAQLALMG 157
Query: 172 LVEGFRINGLPGVGEGN-DL-------------YPGGQYFDPLGLAD-DPVTFAELKVKE 216
VEG R L G + DL YPGG +FDP+ P L+ KE
Sbjct: 158 WVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKE 217
Query: 217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
IKNGRLAM + G + QAI TG+GPLENL H+ +P N
Sbjct: 218 IKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCN 257
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 106/233 (45%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE--------------------------------- 90
A++P +L G GDYG+D GL E
Sbjct: 119 AKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKS 178
Query: 91 ----------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG +T E WL W AG
Sbjct: 179 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE----WL----TGVTWQDAGKVEL 230
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
EG YLG P SI ++ +V+++G +E F+ N + LYPGG++FDPL
Sbjct: 231 VEGST-YLGQPLPF---SITTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPL 283
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP A L++ EIK+ RLAM + GF VQA TGKGPL N HL +P+
Sbjct: 284 GLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 336
>gi|169261096|gb|ACA52196.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 109
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/55 (87%), Positives = 51/55 (92%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGR 104
WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH R
Sbjct: 55 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 109
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 97/193 (50%), Gaps = 18/193 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G PGD+G+D GL PE R + E+IH RWAML G + PE L
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLG---- 112
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR-INGLPGV 184
W KA GG YLG P V ++ +L + + + VE R + P
Sbjct: 113 ----NWVKAQEWAAVPGGQATYLGQP--VPWGTLPTILVIEFLAIAFVEHQRSMEKDP-- 164
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 165 --EKKKYPGGA-FDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 221
Query: 244 NLLDHLENPVANN 256
NL HL +P NN
Sbjct: 222 NLATHLADPWHNN 234
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 105/220 (47%), Gaps = 44/220 (20%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PG++G+D GL +DPE E++H RWAMLG G
Sbjct: 60 PDRPLWFP--GSSPPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG 117
Query: 113 CITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 172
+ PE+LEK V K W+ AG+ ++Y +P + Q+ LMG
Sbjct: 118 ILIPEILEKIGYV--KNFSWYNAGS-------VEYFADPTTLFI--------VQLALMGW 160
Query: 173 VEGFRI-------------------NGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAEL 212
VEG R N P VG YPGG +FDP+ P L
Sbjct: 161 VEGRRWADIVNPGSVDIEPKLPNRPNPKPDVG-----YPGGLWFDPMQWGRGSPEPVMVL 215
Query: 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENP 252
+ KEIKNGRLAM + GF QA+ G P++NL+ HL +P
Sbjct: 216 RTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADP 255
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 103/233 (44%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE--------------------------------- 90
A+ P YL G GDYG+D GL E
Sbjct: 61 AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKS 120
Query: 91 ----------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG +T E WL W AG
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE----WL----TGVTWQDAGKVEL 172
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
EG YLG P SI ++ +V+++G +E F+ N + LYPGG YFDPL
Sbjct: 173 VEGS-SYLGQPLPF---SITTLIWIEVLVIGYIE-FQRNA--ELDPEKRLYPGGSYFDPL 225
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP A L++ EIK+ RLAM GF VQA TGKGPL N HL +P+
Sbjct: 226 GLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 278
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 98/204 (48%), Gaps = 33/204 (16%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL GE GDYGWD GL ADP A R E+ H RWAMLG G + E++
Sbjct: 30 PEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIV------- 82
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG- 185
K V+ F E GL P ++ +L ++ +LM VE R G
Sbjct: 83 -KPDVY-------FYEAGLPQ-NLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKNFGS 133
Query: 186 -------EGNDL------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
+GN + YPGG FDP G + F EL+ KEIKNGRLAM + F +
Sbjct: 134 VNEDPIFKGNKVPNPEMGYPGG-IFDPFGFSKG--DFKELQTKEIKNGRLAMIAYMAFIL 190
Query: 233 QAIVTGKGPLENLLDHLENPVANN 256
QA TGKGPL L HL NP NN
Sbjct: 191 QAQATGKGPLAALSAHLSNPFGNN 214
>gi|356502352|ref|XP_003519983.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
[Glycine max]
Length = 104
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 56/65 (86%)
Query: 198 DPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNA 257
DPLGLADDP FAELKVKE KN RLAMFSMFGFFVQAIVTGKG LENL +HL NPV NNA
Sbjct: 28 DPLGLADDPEVFAELKVKEFKNRRLAMFSMFGFFVQAIVTGKGSLENLTNHLANPVNNNA 87
Query: 258 WVYAT 262
W YAT
Sbjct: 88 WAYAT 92
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 104/204 (50%), Gaps = 36/204 (17%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G GD+G+D GL DP++ E++H R+AM G G + ++L RV
Sbjct: 67 PPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLL----RVT 122
Query: 127 --FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN----- 179
K PVW++AGA F ++++ V Q++LMG E R
Sbjct: 123 GIRKLPVWYEAGAVKF-----------EFASTRTLIVV---QLLLMGFAETKRYMDFVSP 168
Query: 180 ----------GLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
GL EG + YPGG +PLGLA D K+KEIKNGRLAM +M
Sbjct: 169 GSQAKEGSFFGLESALEGLEPGYPGGPLLNPLGLARDIENAHVWKLKEIKNGRLAMVAMV 228
Query: 229 GFFVQAIVTGKGPLENLLDHLENP 252
G FVQA VT GP++NL++HL NP
Sbjct: 229 GIFVQAAVTHAGPIDNLIEHLSNP 252
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 104/205 (50%), Gaps = 34/205 (16%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
++ P +L G PGDYG+D L+A+P E++H RWAMLGA G PE+L K +
Sbjct: 72 SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPELLTK-I 130
Query: 124 RVDFKEPVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
+ P W+KAG A F++ G ++ +++LM E R +
Sbjct: 131 GI-LNTPSWYKAGDATYFADQGTLFI----------------VELLLMAWAESRRWADIA 173
Query: 183 GVGE-------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSM 227
G G D+ YPGG +FDPLG E++ KE+KNGRLAM ++
Sbjct: 174 RPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAV 233
Query: 228 FGFFVQAIVTGKGPLENLLDHLENP 252
G FVQA VT GP++NL HL +P
Sbjct: 234 LGAFVQANVTHVGPIDNLFAHLADP 258
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 106/234 (45%), Gaps = 59/234 (25%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADP-----------EAFARN----------------- 95
A+ P YL G GDYG+D GL P + A+N
Sbjct: 71 AKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDLSTIR 130
Query: 96 ----------------RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQI 139
R E+IHGRWAML LG I E F W AG ++
Sbjct: 131 ATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVET--------FTGVTWQDAG-KV 181
Query: 140 FSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDP 199
+ G Y G +I A++ +V+++G +E R L LYPGG YFDP
Sbjct: 182 ELDQGPSYFG---FSLPFTITALVWIEVLVIGFIEFQRNTEL---DPEKRLYPGGSYFDP 235
Query: 200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
LGLA DP LK+ EIK+ RLAM + FGF VQA TGKGPL+N + HL +P+
Sbjct: 236 LGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLDNWVTHLSDPL 289
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 105/204 (51%), Gaps = 36/204 (17%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G GD+G+D GL DP++ E++H R+AMLG G + L LRV
Sbjct: 60 PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVL----LTDLLRVT 115
Query: 127 --FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
+ PVW+ AGA ++Y + +++ V Q++LMG VE R
Sbjct: 116 GISELPVWYNAGA-------VEY----GFANKRTLFIV---QLLLMGFVETKRYMDFKSP 161
Query: 185 G----EGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
G EG YPGG +PLG+A D + K+KEIKNGRLAM +M
Sbjct: 162 GSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAML 221
Query: 229 GFFVQAIVTGKGPLENLLDHLENP 252
G FVQA VT GP++NL++HL NP
Sbjct: 222 GIFVQAYVTHTGPIDNLVEHLSNP 245
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 94/187 (50%), Gaps = 7/187 (3%)
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127
++L G PGDYG+D LSADPE E+ H RWAMLG GC+ PE+L K D
Sbjct: 47 AHLDGSLPGDYGFDPLSLSADPEMRQWMVQAELQHARWAMLGVAGCVAPELLTKIGVADL 106
Query: 128 KEPVWFKAGA-QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 186
P W A Q ++ GG + + + I + G V + G
Sbjct: 107 --PNWVDAATYQYWAPGGTLFFIQMAMFNWAEIRRWQDMKNP--GSVNTDPLFGYNSNDT 162
Query: 187 GNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
D+ YP G FD G A D T AELK+KEIKNGRLAM + G Q + TG GP+ENL
Sbjct: 163 NTDVGYPKG-LFDKFGWAKDEKTTAELKLKEIKNGRLAMLAFLGICAQYVQTGVGPVENL 221
Query: 246 LDHLENP 252
H+ NP
Sbjct: 222 FSHMGNP 228
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 106/234 (45%), Gaps = 59/234 (25%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADP-----------EAFARN----------------- 95
A+ P YL G GDYG+D GL P + A+N
Sbjct: 71 AKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDLSTIR 130
Query: 96 ----------------RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQI 139
R E+IHGRWAML LG I E F W AG ++
Sbjct: 131 ATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVET--------FTGVTWQDAG-KV 181
Query: 140 FSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDP 199
+ G Y G +I A++ +V+++G +E R L LYPGG YFDP
Sbjct: 182 ELDQGPSYFG---FSLPFTITALVWIEVLVIGFIEFQRNTEL---DPEKRLYPGGSYFDP 235
Query: 200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
LGLA DP LK+ EIK+ RLAM + FGF VQA TGKGPL+N + HL +P+
Sbjct: 236 LGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLDNWVTHLSDPL 289
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 106/233 (45%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE--------------------------------- 90
A++P +L G GDYG+D GL E
Sbjct: 61 AKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKS 120
Query: 91 ----------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG +T E WL W AG
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE----WL----TGVTWQDAGKVEL 172
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
EG YLG P SI ++ +V+++G +E F+ N + LYPGG++FDPL
Sbjct: 173 VEGS-TYLGQPLPF---SITTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPL 225
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP A L++ EIK+ RLAM + GF VQA TGKGPL N HL +P+
Sbjct: 226 GLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 278
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 104/205 (50%), Gaps = 34/205 (16%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
++ P +L G PGDYG+D L+A+P E++H RWAMLGA G PE+L K +
Sbjct: 21 SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPELLTK-I 79
Query: 124 RVDFKEPVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
+ P W+KAG A F++ G ++ +++LM E R +
Sbjct: 80 GI-LNTPSWYKAGDATYFADQGTLFI----------------VELLLMAWAESRRWADIA 122
Query: 183 GVGE-------------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSM 227
G G D+ YPGG +FDPLG E++ KE+KNGRLAM ++
Sbjct: 123 RPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAV 182
Query: 228 FGFFVQAIVTGKGPLENLLDHLENP 252
G FVQA VT GP++NL HL +P
Sbjct: 183 LGAFVQANVTHVGPIDNLFAHLADP 207
>gi|157965833|gb|ABW06953.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 424
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 96/188 (51%), Gaps = 41/188 (21%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A+ P +LTGEFPGD G+D +A+PE+F R RA EV HGR AMLG GC+ PE+L +
Sbjct: 260 AKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGRG- 318
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL-VEGFRINGLP 182
VWF+AG + + A LG + + E +R NG
Sbjct: 319 -------VWFQAGESVDA-------------------AQLGLYFMFLAAPSEYWRGNGGF 352
Query: 183 GVGE-----GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G + GN +YPG FDPL + D E K KEIKNGRLAM + G QA T
Sbjct: 353 GWDQKEKKAGNRIYPG---FDPLKMTSD-----ETKTKEIKNGRLAMIAFLGLVSQANTT 404
Query: 238 GKGPLENL 245
G P +NL
Sbjct: 405 GVSPFQNL 412
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 97/191 (50%), Gaps = 42/191 (21%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A P+YLTGEFP D G+D GL+ DP + R R+ EV H R AMLG +G + PE+
Sbjct: 77 ATPPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPELQ---- 132
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF-QVVLMGL-----VEGFR 177
+ W+ + F G PN V+GF ++ L+G+ +E +R
Sbjct: 133 ----GQGAWYTLSEKQFGPG-------PN-------GEVIGFTELALIGMLFSYPLEYWR 174
Query: 178 INGLPGVG----EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
NG G G +G+ YPG FDPL L + K EIKNGRLAM ++ GF VQ
Sbjct: 175 GNG--GFGWFEEKGDRTYPG---FDPLQLTSE-----YTKTAEIKNGRLAMSALLGFAVQ 224
Query: 234 AIVTGKGPLEN 244
TG PLEN
Sbjct: 225 HATTGASPLEN 235
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 187 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
GN +YPG FDPL + D E K KEIKNGRLAM + G QA TG P +NL
Sbjct: 1 GNRIYPG---FDPLKMTSD-----ETKTKEIKNGRLAMIAFLGLVSQANTTGVSPFQNL 51
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 104/207 (50%), Gaps = 36/207 (17%)
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL--EKWL 123
+P YL G GDYG+D GL A+PE R E+ + RWAMLG G + E++ E+W
Sbjct: 45 SPKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIINPEQW- 103
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR------ 177
W+ AG E + GN ++ +L ++ +LM VE R
Sbjct: 104 --------WYSAG---MPENLPSFDGN-----KVNMGGILAWEFLLMHFVEVRRWQDIRK 147
Query: 178 ---INGLP-----GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
+N P V YPGG FDPLG + F E++ KEIKNGRLAM +
Sbjct: 148 KDSVNADPFNPNLKVPNPEMGYPGGP-FDPLGFSKG--NFKEVQTKEIKNGRLAMVAFVA 204
Query: 230 FFVQAIVTGKGPLENLLDHLENPVANN 256
F +QA TGKGPL NL DHL +P +NN
Sbjct: 205 FTIQAQATGKGPLANLTDHLASPFSNN 231
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 103/233 (44%), Gaps = 57/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE--------------------------------- 90
A+ P YL G GDYG+D GL E
Sbjct: 55 AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTELADVKS 114
Query: 91 ----------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG +T E WL W AG
Sbjct: 115 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE----WL----TGITWQDAGKVEL 166
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
EG YLG P SI ++ +V+++G + F+ N + LYPGG +FDPL
Sbjct: 167 VEGS-SYLGQPLPF---SITTLIWIEVLVIGYIVEFQRNA--ELDPEKRLYPGGSFFDPL 220
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP A L++ EIK+ RLAM + GF VQA TGKGPL N HL +P+
Sbjct: 221 GLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 273
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 106/233 (45%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSA-------DPEAFARN--------------------- 95
AQ P YL G GDYG+D GL DP++ +N
Sbjct: 61 AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGEVIGTRFEDADIKS 120
Query: 96 ---------------RALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R E+IHGRWAML LG +T E WL W AG
Sbjct: 121 TPLQPYAEVFGLQRFRECELIHGRWAMLATLGALTVE----WL----TGVTWQDAGKVEL 172
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
+G YLG P +I ++ +V+++G +E F+ N + LYPGG YFDPL
Sbjct: 173 VDGS-SYLGQPLPF---TITTLIWIEVLVIGYIE-FQRNA--ELDPEKRLYPGGSYFDPL 225
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP L++ EIK+ RLAM GF VQA TGKGPL N HL +P+
Sbjct: 226 GLAADPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 278
>gi|157965831|gb|ABW06952.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 786
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 96/188 (51%), Gaps = 41/188 (21%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A+ P +LTGEFPGD G+D +A+PE+F R RA EV HGR AMLG GC+ PE+L +
Sbjct: 622 AKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGR-- 679
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL-VEGFRINGLP 182
VWF+AG + + A LG + + E +R NG
Sbjct: 680 ------GVWFQAGESVDA-------------------AQLGLYFMFLAAPSEYWRGNGGF 714
Query: 183 GVGE-----GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
G + GN +YPG FDPL + D E K KEIKNGRLAM + G QA T
Sbjct: 715 GWDQKEKKAGNRIYPG---FDPLKMTSD-----ETKTKEIKNGRLAMIAFLGLVSQANTT 766
Query: 238 GKGPLENL 245
G P +NL
Sbjct: 767 GVSPFQNL 774
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 96/189 (50%), Gaps = 42/189 (22%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A+ P +LTGEFPGD G+D +A+PE+F R RA EV HGR AMLG GC+ PE+L +
Sbjct: 260 AKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGR-- 317
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL-VEGFRINGLP 182
VWF+AG + + A LG + + E +R NG
Sbjct: 318 ------GVWFQAGESVDA-------------------AQLGLYFMFLAAPSEYWRGNGGF 352
Query: 183 GVGE------GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236
G + GN +YPG FDPL + D E K KEIKNGRLAM + G QA
Sbjct: 353 GWDQKEKKAGGNRIYPG---FDPLKMTSD-----ETKTKEIKNGRLAMIAFLGLVSQANT 404
Query: 237 TGKGPLENL 245
TG P +NL
Sbjct: 405 TGVSPFQNL 413
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 97/191 (50%), Gaps = 42/191 (21%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A P+YLTGEFP D G+D GL+ DP + R R+ EV H R AMLG +G + PE+
Sbjct: 77 ATPPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPELQ---- 132
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF-QVVLMGL-----VEGFR 177
+ W+ + F G PN V+GF ++ L+G+ +E +R
Sbjct: 133 ----GQGAWYTLSEKQFGPG-------PN-------GEVIGFTELALIGMLFSYPLEYWR 174
Query: 178 INGLPGVG----EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
NG G G +G+ YPG FDPL L + K EIKNGRLAM ++ GF VQ
Sbjct: 175 GNG--GFGWFEEKGDRTYPG---FDPLQLTSE-----YTKTAEIKNGRLAMSALLGFAVQ 224
Query: 234 AIVTGKGPLEN 244
TG PLEN
Sbjct: 225 HATTGASPLEN 235
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 97/191 (50%), Gaps = 42/191 (21%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
A P+YLTGEFP D G+D GL+ DP + R R+ EV H R AMLG +G + PE+
Sbjct: 439 ATPPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPELQ---- 494
Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF-QVVLMGL-----VEGFR 177
+ W+ + F G PN V+GF ++ L+G+ +E +R
Sbjct: 495 ----GQGAWYTLSEKQFGPG-------PN-------GEVIGFTELALIGMLFSYPLEYWR 536
Query: 178 INGLPGVG----EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
NG G G +G+ YPG FDPL L + K EIKNGRLAM ++ GF VQ
Sbjct: 537 GNG--GFGWFEEKGDRTYPG---FDPLQLTSE-----YTKTAEIKNGRLAMSALLGFAVQ 586
Query: 234 AIVTGKGPLEN 244
TG PLEN
Sbjct: 587 HATTGASPLEN 597
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 187 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
GN +YPG FDPL + D E K KEIKNGRLAM + G QA TG P +NL
Sbjct: 1 GNRIYPG---FDPLKMTSD-----ETKTKEIKNGRLAMIAFLGLVSQANTTGVSPFQNL 51
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 112/259 (43%), Gaps = 58/259 (22%)
Query: 38 MGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE------- 90
G+ K ++ GP + L A+ P +L G GDYG+D GL E
Sbjct: 35 FGSKKKAAPKKVSKGPSTDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELD 94
Query: 91 ------------------------------------AFARNRALEVIHGRWAMLGALGCI 114
R R E+IHGRWAML LG +
Sbjct: 95 SLDQNLAKNEAGIIIGTRTEVADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAL 154
Query: 115 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVE 174
+ E WL W AG EG YLG P SI ++ +V+++G +E
Sbjct: 155 SVE----WL----TGVTWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIE 202
Query: 175 GFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
F+ N + LYPGG YFDPLGLA DP A L++ EIK+ RLAM GF VQA
Sbjct: 203 -FQRNA--ELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQA 259
Query: 235 IVTGKGPLENLLDHLENPV 253
TGKGPL N HL +P+
Sbjct: 260 AATGKGPLNNWATHLSDPL 278
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 96/192 (50%), Gaps = 19/192 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE--KWLR 124
P + PG++ +D L + R R E+IH RWAMLGA GC+ EVL W
Sbjct: 43 PKEYLNDLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGLGNW-- 100
Query: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
+ P+W G + G + I +LG +VV M + EG R +
Sbjct: 101 --YDAPLWAVTGDKPTWFG---------IEVPFDIATILGVEVVAMAVAEGLRNDNQ--- 146
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 244
LYPGG FDPLG + DP +F + K+KE+KNGRLAM + GF Q TGK LE
Sbjct: 147 DMEKRLYPGGA-FDPLGFSKDPKSFEDKKLKELKNGRLAMVACLGFAGQHAATGKPILEA 205
Query: 245 LLDHLENPVANN 256
L DHL +P NN
Sbjct: 206 LGDHLSSPFFNN 217
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 102/198 (51%), Gaps = 18/198 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P++L G P DYG+D L ADPE E++H RWAMLG G + PE+L K D
Sbjct: 52 PAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTKIGMAD 111
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL----MGLVEGFRINGLP 182
P W AG +LG L Q +A++ + V M + L
Sbjct: 112 L--PNWIDAGKWDGY-----WLGAGPLFFVQ--MAMMNWAEVRRWQDMKAPGTMNEDPLT 162
Query: 183 GVGEGN---DL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238
G +G+ D+ YP G FDP+G A DP ELK KEI NGRLAM ++ G F QAI TG
Sbjct: 163 GANKGDTNTDVGYPKG-LFDPMGYAKDPKKAEELKRKEIANGRLAMVAIVGCFAQAISTG 221
Query: 239 KGPLENLLDHLENPVANN 256
GP++NL HL +P NN
Sbjct: 222 TGPVDNLFTHLADPGHNN 239
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 90/160 (56%), Gaps = 15/160 (9%)
Query: 94 RNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNL 153
R R E+IHGRWAML LG +T E WL W AG EG YLG P
Sbjct: 131 RFRECELIHGRWAMLATLGALTVE----WL----TGVTWQDAGKVELVEGS-SYLGQPLP 181
Query: 154 VHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 213
S+ ++ +V+++G +E F+ N + LYPGG+YFDPLGLA DP A L+
Sbjct: 182 F---SMTTLIWIEVLVIGFIE-FQRNA--ELDPEKRLYPGGKYFDPLGLAADPEKKATLQ 235
Query: 214 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
+ EIK+ RLAM + GF VQA TGKGPL N HL +P+
Sbjct: 236 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 275
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 107/233 (45%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE--------------------------------- 90
A+ P +L G GDYG+D GL E
Sbjct: 57 AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKS 116
Query: 91 ----------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG ++ E WL W AG
Sbjct: 117 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVE----WL----TGVTWQDAGKVEL 168
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
EG YLG P SI ++ +V+++G +E F+ N + LYPGG++FDPL
Sbjct: 169 VEGS-SYLGQP---LPFSITTLIWIEVLVIGYIE-FQRNA--ELDPEKRLYPGGKFFDPL 221
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA+DP A L++ EIK+ RLAM + GF VQA VTGKGPL N HL +P+
Sbjct: 222 GLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPL 274
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 126/276 (45%), Gaps = 53/276 (19%)
Query: 1 MASIMAAAT---ASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVK 57
MA+ +A ++ + S+ + R F G++RT + V A ++W+
Sbjct: 1 MANAVAMSSLLGSKSAVAARPAAFSGKARTARVQARFV-----AVSAADRQVWF------ 49
Query: 58 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 117
P +A P +L G PGD+G+D L +DP+ + E++HGR AM G + P
Sbjct: 50 ---PGNAPAP-HLDGSLPGDFGFDPLSLGSDPQLLKWFQQAELVHGRTAMTAVAGILFPA 105
Query: 118 VLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 177
V K V+ P W+ AG+ NPN A A+L Q++L G VE R
Sbjct: 106 VATKAGVVNI--PQWYDAGSVWVQN-------NPNFPFA----ALLFIQIILTGWVETKR 152
Query: 178 ------------------INGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIK 218
+ GV G YPGG+ FDP GL+ + + EIK
Sbjct: 153 WLDFKNPGSQADGSFLGVTDDFKGVANG---YPGGKLFDPFGLSRGSEGQLQKYQENEIK 209
Query: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVA 254
NGRLAM + GF Q TGKGP++NL DHL NP A
Sbjct: 210 NGRLAMVAFLGFIAQHAATGKGPIDNLADHLANPTA 245
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 101/204 (49%), Gaps = 36/204 (17%)
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
+P+YL G PGD G+D GL+ DPE+ E+++GRWAMLG G + PEVL + +
Sbjct: 61 SPTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFI 120
Query: 126 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
D P W+ AG ++Y + S L V+ F +L VE R + G
Sbjct: 121 DV--PKWYDAGK-------VEYFA------SSSTLFVIEF--ILFHYVELRRWQDIKYPG 163
Query: 186 EGNDL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 231
N YPGG F+PL + E K KE+ NGRLAM + GF
Sbjct: 164 SVNQDPVFKNYSLPPNEVGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGFV 218
Query: 232 VQAIVTGKGPLENLLDHLENPVAN 255
VQ VTGKGP ENLL HL +P N
Sbjct: 219 VQHNVTGKGPFENLLQHLSDPWHN 242
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 105/233 (45%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE--------------------------------- 90
A+ P YL G GDYG+D GL E
Sbjct: 56 AKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTRTEVSDVKS 115
Query: 91 ----------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG ++ E WL W AG
Sbjct: 116 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVE----WL----TGVTWQDAGKVEL 167
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
EG YLG P SI ++ +V+++G +E F+ N + LYPGG +FDPL
Sbjct: 168 VEGS-SYLGQP---LPFSITTLILIEVLVIGYIE-FQRNA--ELDPEKRLYPGGNFFDPL 220
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP A L++ EIK+ RLAM + GF VQA VTGKGPL N HL +P+
Sbjct: 221 GLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSDPL 273
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 105/233 (45%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE--------------------------------- 90
A+ P YL G GDYG+D GL E
Sbjct: 56 AKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTRTEVSDVKS 115
Query: 91 ----------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG ++ E WL W AG
Sbjct: 116 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVE----WL----TGVTWQDAGKVEL 167
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
EG YLG P SI ++ +V+++G +E F+ N + LYPGG +FDPL
Sbjct: 168 VEGS-SYLGQP---LPFSITTLILIEVLVIGYIE-FQRNA--ELDPEKRLYPGGNFFDPL 220
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP A L++ EIK+ RLAM + GF VQA VTGKGPL N HL +P+
Sbjct: 221 GLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSDPL 273
>gi|297740654|emb|CBI30836.3| unnamed protein product [Vitis vinifera]
Length = 110
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 66/102 (64%), Gaps = 28/102 (27%)
Query: 166 QVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 225
+V+LMG VEG+RI G PLG +VKEIKNGRLAMF
Sbjct: 36 EVILMGAVEGYRIAG-----------------GPLG-----------EVKEIKNGRLAMF 67
Query: 226 SMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
SMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 68 SMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 109
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 91/160 (56%), Gaps = 15/160 (9%)
Query: 94 RNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNL 153
R R E+IHGRWAML LG ++ E WL W AG +G YLG P
Sbjct: 136 RFRECELIHGRWAMLATLGALSVE----WL----TGVTWQDAGKVELVDGS-SYLGQPLP 186
Query: 154 VHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 213
SI ++ +V+++G +E F+ N + LYPGG+YFDPLGLA DP A+L+
Sbjct: 187 F---SISTLIWIEVLVVGYIE-FQRNA--ELDSEKRLYPGGKYFDPLGLAADPEKRAQLQ 240
Query: 214 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
+ EIK+ RLAM + GF VQA TGKGPL N HL +P+
Sbjct: 241 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 280
>gi|116793607|gb|ABK26807.1| unknown [Picea sitchensis]
Length = 125
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/63 (80%), Positives = 55/63 (87%)
Query: 205 DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKF 264
D V + ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL +PV NNAW YAT F
Sbjct: 62 DRVLYLELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNF 121
Query: 265 VPG 267
VPG
Sbjct: 122 VPG 124
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 109/230 (47%), Gaps = 40/230 (17%)
Query: 50 WYGPDRVKYLGP----FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 105
WYGP+R YL + PSY+ G GDYG+D L D + A+ R EV H RW
Sbjct: 108 WYGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDPLQLGKDGK-IAQYRIAEVQHARW 166
Query: 106 AMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGL---DYLGNPNLVHAQSILAV 162
AML G + PE L W + G ++F +G + LGNP L A
Sbjct: 167 AMLAVPGVVIPEAL------GVPGGNWTETG-KVFLDGEAGRPEILGNPYLFTA------ 213
Query: 163 LGFQVVLMGLVEGFRINGLP---------GVGEGND------LYPGGQYFDPLGLADDPV 207
+V L+ VEG+R L G EG D + PGG D L +A P
Sbjct: 214 --IEVALLAGVEGYRSGKLEAPAGFAPIYGKFEGKDFKGLDPINPGGP-LDFLNVASTPE 270
Query: 208 TFAELKVKEIKNGRLAMFSMFGFFVQAIVT-GKGPLENLLDHLENPVANN 256
A LKVKEIKNGRLAM +M G FVQ T G+GP N H+ +P A N
Sbjct: 271 DLAILKVKEIKNGRLAMIAMLGVFVQGATTGGEGPATNWAKHVADPFAYN 320
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 97/204 (47%), Gaps = 33/204 (16%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G+ GDYGWD GL ADP A R E+ H RWAMLG G + E++
Sbjct: 42 PEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIV------- 94
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG- 185
K V+ F E GL P ++ +L ++ +LM VE R G
Sbjct: 95 -KPDVY-------FYEAGLPQ-NLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKNFGS 145
Query: 186 -------EGNDL------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
+GN + YPGG FDP G + EL+ KEIKNGRLAM + F +
Sbjct: 146 VNEDPIFKGNKVPNPEMGYPGG-IFDPFGFSKG--NLKELQTKEIKNGRLAMIAYMAFIL 202
Query: 233 QAIVTGKGPLENLLDHLENPVANN 256
QA TGKGPL L HL NP NN
Sbjct: 203 QAQATGKGPLAALSAHLSNPFGNN 226
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 107/233 (45%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE--------------------------------- 90
A++P +L G GDYG+D GL E
Sbjct: 59 AKSPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEEAAPKS 118
Query: 91 ----------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG ++ E WL W AG
Sbjct: 119 TPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVE----WL----TGVTWQDAGKVEL 170
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
+G YLG P SI ++ +V+++G +E F+ N + LYPGG++FDPL
Sbjct: 171 VDGS-SYLGQPLPF---SISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPL 223
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP A+L++ EIK+ RLAM + GF VQA TGKGPL N HL +P+
Sbjct: 224 GLASDPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 276
>gi|169261110|gb|ACA52203.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera elata subsp. hookeri]
Length = 103
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 5 MAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAK----YTMGNELWYGPDRVKYLG 60
MA T SS+ + +A + RT A V M A + WYGPDRVKYLG
Sbjct: 1 MATVTLSSTFTGKAVLSTPKERTAAGLDNGRVTMRKATPKKAAATSSSPWYGPDRVKYLG 60
Query: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIH 102
PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH
Sbjct: 61 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 102
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PSYL G PGD+G+D GL PE R + E+IH RWAML G + PE L
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEAL------- 63
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W A + GG YLGNP V ++ +L + + + VE R NG
Sbjct: 64 -GYGNWVSAQKWAATPGGQATYLGNP--VPWGNLPIILAVEFIAIAFVESQR-NG--ESD 117
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV-TGKGPLEN 244
YPGG FDPLG + ELK+KEIKNGRLA+ + GF VQA+ G GPLEN
Sbjct: 118 PEKRKYPGGP-FDPLGFSKG-ANLEELKLKEIKNGRLALVAFLGFVVQAVAYPGTGPLEN 175
Query: 245 LLDHLENPVANN 256
L HL +P N
Sbjct: 176 LKTHLADPWHNT 187
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 100/204 (49%), Gaps = 18/204 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P YL G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLG---- 110
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLG P V ++ +L + + + VE R +
Sbjct: 111 ----NWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILVIEFLAIAFVEHQR--SMEKDP 162
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
E YPGG FDPLG + DP F E KVKEIKNGRLA+ + G V Q+ G GPLEN
Sbjct: 163 EKKK-YPGGA-FDPLGYSKDPAKFHEYKVKEIKNGRLALLAFVGICVQQSAYPGTGPLEN 220
Query: 245 LLDHLENPVANNA--WVYATKFVP 266
L HL +P NN + T F P
Sbjct: 221 LATHLADPWHNNIGDIIIPTSFSP 244
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 111/212 (52%), Gaps = 33/212 (15%)
Query: 48 ELWYGPD-RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
+LWY + +L P + +TP YL G GDYG+D GL +DPE + E+++ RWA
Sbjct: 37 KLWYEFSFSIFFLLP-NIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAELMNARWA 95
Query: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
M+ G T E L + W+ AG + DY G P ++AQ LAVL
Sbjct: 96 MMAVAGICTTEALG-------IQSKWYMAGQE-------DY-GFP--INAQ--LAVL--- 133
Query: 167 VVLMGLVEGFRINGLPGVGEG--NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
MG +E RI G G+ N+ +P FDPLG+ D + +K+KEIKNGR AM
Sbjct: 134 FPTMGFLETKRITGWLATGKSGINETFP----FDPLGMGADSDS---MKLKEIKNGRAAM 186
Query: 225 FSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
+ G VQA+V +GPL L DH+ NP NN
Sbjct: 187 IAFVGICVQALVLREGPLAALQDHVANPFGNN 218
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 103/233 (44%), Gaps = 58/233 (24%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPE--------------------------------- 90
A P YL G GDYG+D GL E
Sbjct: 58 AVAPEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFEPGEVKS 117
Query: 91 ----------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG ++ E WL W AG ++
Sbjct: 118 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVE----WL----TGVTWQDAG-KVE 168
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
E G YLG P S+ ++ +V+L+G +E F+ N + LYPGG YFDPL
Sbjct: 169 LENGSSYLGQPLPF---SMTTLIWIEVLLIGYIE-FQRNA--ELDPEKRLYPGGSYFDPL 222
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
GLA DP L++ EIK+ RLAM GF VQA TGKGPL N HL +P+
Sbjct: 223 GLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 275
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 101/204 (49%), Gaps = 36/204 (17%)
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
+P+YL G PGD G+D GL+ DP++ E+++GRWAMLG G + PEVL + +
Sbjct: 61 SPTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFI 120
Query: 126 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
D P W+ AG ++Y + S L V+ F +L VE R + G
Sbjct: 121 DV--PKWYDAGK-------VEYFA------SSSTLFVIEF--ILFHYVELRRWQDIKYPG 163
Query: 186 EGNDL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 231
N YPGG F+PL + E K KE+ NGRLAM + GF
Sbjct: 164 SVNQDPVFKNYSLPPNEVGYPGG-IFNPLNFSPS----MEAKEKELANGRLAMLAFLGFV 218
Query: 232 VQAIVTGKGPLENLLDHLENPVAN 255
VQ VTGKGP ENLL HL +P N
Sbjct: 219 VQHNVTGKGPFENLLQHLSDPWHN 242
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 104/225 (46%), Gaps = 46/225 (20%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DP+ E+IH RWAML G
Sbjct: 63 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 113 CITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
I PE LE R+ F E W+ AG++ +Y + + Q+VLMG
Sbjct: 121 IIIPECLE---RLGFIENFSWYDAGSR-------EYFADSTTLFVA--------QMVLMG 162
Query: 172 LVEGFR-------------------INGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
EG R +N P VG YPGG +FD + P
Sbjct: 163 WAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVG-----YPGGLWFDFMMWGRGSPEPVMV 217
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF QA T + P+ENL+ HL +P N
Sbjct: 218 LRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCN 262
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 104/220 (47%), Gaps = 42/220 (19%)
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK---W 122
P++L G PGD+G+D GL ADPE A E +H RWAML G EV+ W
Sbjct: 48 APAHLDGSLPGDFGFDPLGLGADPERLAWFAESERVHARWAMLAVAGIAVQEVVRPDVFW 107
Query: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL- 181
K P+ F GN +IL ++ F++ M VE R
Sbjct: 108 YEAALKSPMPF---------------GN----SPAAILGLVAFELFAMHFVEVRRAYDFK 148
Query: 182 -PGVGEGNDL------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
PG + + + YPGG F P+ D AELK+KEIKNGRLAM +
Sbjct: 149 NPGSQDQDPIFSNNKLPKHEVGYPGG-IFAPVIPGD----LAELKLKEIKNGRLAMLAFA 203
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
GF +QA VTGKGPL +L DHL NP+ + A +PG
Sbjct: 204 GFVMQAQVTGKGPLASLGDHLSNPIGTTIFSKAV-VIPGQ 242
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 104/225 (46%), Gaps = 46/225 (20%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DP+ E+IH RWAML G
Sbjct: 63 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 113 CITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
I PE LE R+ F E W+ AG++ +Y + + Q+VLMG
Sbjct: 121 IIIPECLE---RLGFIENFSWYDAGSR-------EYFADSTTLFVA--------QMVLMG 162
Query: 172 LVEGFR-------------------INGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
EG R +N P VG YPGG +FD + P
Sbjct: 163 WAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVG-----YPGGLWFDFMMWGRGSPEPVMV 217
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF QA T + P+ENL+ HL +P N
Sbjct: 218 LRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCN 262
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 104/225 (46%), Gaps = 46/225 (20%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + + P +L G PGD+G+D GL +DP+ E+IH RWAML G
Sbjct: 63 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 113 CITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
I PE LE R+ F E W+ AG++ +Y + + Q+VLMG
Sbjct: 121 IIIPECLE---RLGFIENFSWYDAGSR-------EYFADSTTLFVA--------QMVLMG 162
Query: 172 LVEGFR-------------------INGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
EG R +N P VG YPGG +FD + P
Sbjct: 163 WAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVG-----YPGGLWFDFMMWGRGSPEPVMV 217
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF QA T + P+ENL+ HL +P N
Sbjct: 218 LRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCN 262
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 123/262 (46%), Gaps = 38/262 (14%)
Query: 8 ATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTP 67
A A+ + RA+ FLG + + L +A+ + PDR + + P
Sbjct: 13 AVAALPGAPRASSFLGGAGRSGRLLLRQAESSSARASFAVRA-AAPDRPIWFP--GSTPP 69
Query: 68 SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127
+L G PGD+G+D GL +DPE+ N +++H RWAMLGA G PE L K + +
Sbjct: 70 PWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLGAAGIFIPEFLTK-IGI-L 127
Query: 128 KEPVWFKAGA-QIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL---PG 183
P W+ AG Q F++ ++ +++L+G EG R + PG
Sbjct: 128 NTPSWYTAGEHQYFTDTTTLFI----------------IELILIGWAEGRRWADIIINPG 171
Query: 184 VGEGNDLYPGGQ------------YFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGF 230
+ ++P Q + DPLG P EL+ KEIKNGR+AM ++ G
Sbjct: 172 CVNTDPIFPQQQVHGHRRGEPCGLWLDPLGWGTVSPEKIKELRTKEIKNGRVAMLAVMGA 231
Query: 231 FVQAIVTGKGPLENLLDHLENP 252
+ QA TG GP++N H+ +P
Sbjct: 232 WFQAEHTGTGPIDNFFAHVADP 253
>gi|169261112|gb|ACA52204.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera grandiflora]
Length = 103
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 58/81 (71%), Gaps = 5/81 (6%)
Query: 22 LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWD 81
LG R T ++ P A + WYGPDRVKYLGPFS + PSYLTGEFPGDYGWD
Sbjct: 27 LGNGRVT---MRKATPKKAA--ATSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 81
Query: 82 TAGLSADPEAFARNRALEVIH 102
TAGLSADPE FA+NR LEVIH
Sbjct: 82 TAGLSADPETFAKNRELEVIH 102
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 107/225 (47%), Gaps = 46/225 (20%)
Query: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
PDR + P SA P +L G PGD+G+D GL +DP+ E+IH RWAML G
Sbjct: 62 PDRPLWF-PGSA-PPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 119
Query: 113 CITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMG 171
+ PE LE R+ F E W++AG++ +Y + + Q+VLMG
Sbjct: 120 ILIPECLE---RLGFIENFSWYEAGSR-------EYFADSTTLFVA--------QMVLMG 161
Query: 172 LVEGFR-------------------INGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTFAE 211
EG R +N P VG YPGG +FD + P
Sbjct: 162 WAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVG-----YPGGLWFDFMMWGRGSPEPVMV 216
Query: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
L+ KEIKNGRLAM + GF QA T + P+ENL+ HL +P N
Sbjct: 217 LRTKEIKNGRLAMLAFVGFCFQATYTSQDPIENLMAHLADPGHCN 261
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 97/192 (50%), Gaps = 17/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
PSYL G PGD+G+D GL PE R + E+IH RWAML G + PE L
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL------- 63
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W A + GG YLGNP V ++ +L + + + E R NG
Sbjct: 64 -GYGNWVSAQKWAATPGGQATYLGNP--VPWGTLPVILAVEFIAIAFAESQR-NG--ESD 117
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV-TGKGPLEN 244
YPGG FDP+G + ELK+KEIKNGRLA+ + GF +QAI G GPLEN
Sbjct: 118 PEKRKYPGGA-FDPMGFSKG-ANLEELKLKEIKNGRLALVAFLGFAIQAIAYPGTGPLEN 175
Query: 245 LLDHLENPVANN 256
L HL +P N
Sbjct: 176 LKTHLADPWHNT 187
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 91/160 (56%), Gaps = 15/160 (9%)
Query: 94 RNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNL 153
R R E+IHGRWAML LG ++ E WL W AG +G YLG P
Sbjct: 135 RFRECELIHGRWAMLATLGALSVE----WL----TGVTWQDAGKVELVDGS-SYLGQPLP 185
Query: 154 VHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 213
SI ++ +V+++G +E F+ N + LYPGG++FDPLGLA DP A+L+
Sbjct: 186 F---SISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPLGLAADPEKTAQLQ 239
Query: 214 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
+ EIK+ RLAM + GF VQA TGKGPL N HL +P+
Sbjct: 240 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 91/160 (56%), Gaps = 15/160 (9%)
Query: 94 RNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNL 153
R R E+IHGRWAML LG ++ E WL W AG +G YLG P
Sbjct: 135 RFRECELIHGRWAMLATLGALSVE----WL----TGVTWQDAGKVELVDGS-SYLGQPLP 185
Query: 154 VHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 213
SI ++ +V+++G +E F+ N + LYPGG++FDPLGLA DP A+L+
Sbjct: 186 F---SISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPLGLAADPEKTAQLQ 239
Query: 214 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPV 253
+ EIK+ RLAM + GF VQA TGKGPL N HL +P+
Sbjct: 240 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 101/195 (51%), Gaps = 20/195 (10%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK-- 121
+ TP+YL G PG +G+D GL + P R + E++H RWAM G G + E+L +
Sbjct: 41 SDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVAGALGAELLGQGD 99
Query: 122 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 181
W ++ P+W G G YLG P + ++LA+ + V + E R N
Sbjct: 100 W----YQAPLWAVNG------GAPTYLGIPVPFNLSTLLAI---EFVAIAGAEAQR-NAE 145
Query: 182 PGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
P + YPGG FDPLG + D E K+KE+KNGRLAM + GF Q TGKGP
Sbjct: 146 PDAEKRK--YPGGA-FDPLGFSKDSKVLEENKLKELKNGRLAMLAFVGFIAQHAATGKGP 202
Query: 242 LENLLDHLENPVANN 256
LE L HL +P N
Sbjct: 203 LEALKLHLADPWGAN 217
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 125/273 (45%), Gaps = 55/273 (20%)
Query: 1 MASIMA---AATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVK 57
MAS+ A A SS SL++T FLGQS T + A T N R +
Sbjct: 1 MASVTARTPVAALRSSASLKST-FLGQSSTR---------LARAPTTRRNV------RAE 44
Query: 58 YLGPF--SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIT 115
G + +P+YL G PGD G+D GL+ DPE E+++GRWAMLG G +
Sbjct: 45 AKGEWLPGLPSPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLL 104
Query: 116 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
PEVL K +D P W+ AG + + S L V+ F +L VE
Sbjct: 105 PEVLTKIGLID--APQWYDAGKATY-------------FASSSTLFVIEF--ILFHYVEI 147
Query: 176 FRINGL--PGVGEGNDLYPG-----------GQYFDPLGLADDPVTFAELKVKEIKNGRL 222
R + PG + ++ G F+PL +P E K KE+ NGRL
Sbjct: 148 RRWQDIKNPGCVNQDPIFKSYSLPPHECGYPGSVFNPLNF--EPTL--EAKEKELANGRL 203
Query: 223 AMFSMFGFFVQAIVTGKGPLENLLDHLENPVAN 255
AM + GF VQ VT KGP +NLL HL +P N
Sbjct: 204 AMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHN 236
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,702,250,585
Number of Sequences: 23463169
Number of extensions: 214354329
Number of successful extensions: 420902
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 413637
Number of HSP's gapped (non-prelim): 2924
length of query: 268
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 128
effective length of database: 9,074,351,707
effective search space: 1161517018496
effective search space used: 1161517018496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)