BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024395
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 342 bits (877), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 188/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLG
Sbjct: 16 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 75
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 76 ALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 134
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 135 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 192
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 193 GFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 231
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 341 bits (875), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/231 (76%), Positives = 191/231 (82%), Gaps = 4/231 (1%)
Query: 39 GNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
G K + WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR L
Sbjct: 5 GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 64
Query: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
EVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQS
Sbjct: 65 EVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQS 123
Query: 159 ILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEI 217
ILA+ QV+LMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEI
Sbjct: 124 ILAIWACQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEI 181
Query: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 182 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 232
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 338 bits (867), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 172/219 (78%), Positives = 187/219 (85%), Gaps = 4/219 (1%)
Query: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLG
Sbjct: 16 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 75
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
ALG + PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+L
Sbjct: 76 ALGSVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 134
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
MG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMF
Sbjct: 135 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 192
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 193 GFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 231
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 63 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 116
S Q+ SYL G PGDYG+D GLS DPE F + L E+I+GR+AMLGA+G I P
Sbjct: 62 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120
Query: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 175
E+L K + + + WF+ G I G +Y + + F++ LMG E
Sbjct: 121 EILGKAGLIPQETALPWFRTGF-IPPAGTYNYWADSYTLFV--------FEMALMGFAEH 171
Query: 176 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
R PG G G YPGG +F+PLG D + +LK+KE+KN
Sbjct: 172 RRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKN 231
Query: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GRLAM ++ G+FVQA+VTG GP +NLLDHL +PV NN
Sbjct: 232 GRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNN 268
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 103/201 (51%), Gaps = 32/201 (15%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P +L G PGD+G+D GLS+DPE+ N E++H RWAMLGA G PE L K L +
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTK-LGI- 58
Query: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG- 185
P W+ AG Q + ++ V ++V +G EG R + G
Sbjct: 59 LNTPSWYTAGEQEY------------FTDTTTLFIV---ELVFIGWAEGRRWADILNPGC 103
Query: 186 ------------EGNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 104 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAW 163
Query: 232 VQAIVTGKGPLENLLDHLENP 252
Q I TG GP++NL HL +P
Sbjct: 164 FQHIYTGTGPIDNLFAHLADP 184
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 121/262 (46%), Gaps = 51/262 (19%)
Query: 28 TANALKDVVPMGNAKYTMGNELWY-----GPDRVKYLGPFS-------------AQTPSY 69
T ++ K+ P G +K +G +L P RV+ + P +
Sbjct: 17 TPSSQKNGSPSGTSKAFLGRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPW 76
Query: 70 LTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKE 129
L G PGD+G+D GL +DPE+ N E++H RWAMLGA G PE L K L +
Sbjct: 77 LDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTK-LGI-LNT 134
Query: 130 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG---- 185
P W+ AG Q + ++ V ++V +G EG R + G
Sbjct: 135 PSWYTAGEQEY------------FTDTTTLFIV---ELVFIGWAEGRRWADILNPGCVNT 179
Query: 186 ---------EGNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G + Q
Sbjct: 180 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH 239
Query: 235 IVTGKGPLENLL-DHLENPVAN 255
I TG GP++NL HL +P A
Sbjct: 240 IYTGTGPIDNLFAAHLADPHAT 261
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 99/192 (51%), Gaps = 16/192 (8%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G PGD+G+D GL P R + E+IH RWAML G + PE L
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG---- 110
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
W KA GG YLGNP V ++ +L + + + VE R +
Sbjct: 111 ----NWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR--SMEKDP 162
Query: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 244
E YPGG FDPLG + DP ELKVKEIKNGRLA+ + GF V Q+ G GPLEN
Sbjct: 163 EKKK-YPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 220
Query: 245 LLDHLENPVANN 256
L HL +P NN
Sbjct: 221 LATHLADPWHNN 232
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 99/193 (51%), Gaps = 18/193 (9%)
Query: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
P+YL G PGD+G+D GL P R + E+IH RWAML G + PE L
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG---- 62
Query: 127 FKEPVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR-INGLPGV 184
W KA GG YLGNP V ++ +L + + + VE R + P
Sbjct: 63 ----NWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP-- 114
Query: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
YPGG FDPLG + DP ELKVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 115 --EKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 171
Query: 244 NLLDHLENPVANN 256
NL HL +P NN
Sbjct: 172 NLATHLADPWHNN 184
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 92/168 (54%), Gaps = 26/168 (15%)
Query: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQ 157
E+I+GR+AMLGA G I PE+L K + + + WF+ G I G Y +
Sbjct: 6 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYTYWAD------N 58
Query: 158 SILAVLGFQVVLMGLVEGFRINGL--PG--------------VGEGNDLYPGGQYFDPLG 201
L VL ++ LMG E R+ PG G GN YPGG +F+PLG
Sbjct: 59 YTLFVL--EMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLG 116
Query: 202 LADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 249
D + ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NLLDHL
Sbjct: 117 FGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHL 164
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 92/181 (50%), Gaps = 18/181 (9%)
Query: 75 PGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFK 134
PGD+G+D GL P R + E+IH RWAML G + PE L W K
Sbjct: 3 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL--------GYGNWVK 54
Query: 135 AGAQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR-INGLPGVGEGNDLYP 192
A GG YLGNP V ++ +L + + + VE R + P YP
Sbjct: 55 AQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDPE----KKKYP 108
Query: 193 GGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLEN 251
GG FDPLG + DP ELKVKEIKNGRLA+ + GF V Q+ G GPLENL HL +
Sbjct: 109 GGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 167
Query: 252 P 252
P
Sbjct: 168 P 168
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 106/236 (44%), Gaps = 59/236 (25%)
Query: 64 AQTPSYLTGEFPGDYGWDTAGL--------------------------------SADPEA 91
A+ P YL G GDYG+D GL SAD ++
Sbjct: 18 AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKS 77
Query: 92 -----------FARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIF 140
R R E+IHGRWAML LG +T E L W AG
Sbjct: 78 TSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI--------TWQDAGKVEL 129
Query: 141 SEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPL 200
EG YLG P S+ ++ +V+++G +E F+ N + LYPGG FDPL
Sbjct: 130 IEGS-SYLGQPLPF---SMTTLIWIEVLVIGYIE-FQRNA--ELDTEKRLYPGGT-FDPL 181
Query: 201 GLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANN 256
GLA DP L++ EIK+ RLAM GF VQA VTGKGPL N + HL +P+
Sbjct: 182 GLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTT 237
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 89/181 (49%), Gaps = 32/181 (17%)
Query: 87 ADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLD 146
+DPE+ N E++H RWAMLGA G PE L K L + P W+ AG Q +
Sbjct: 1 SDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTK-LGI-LNTPSWYTAGEQEY------ 52
Query: 147 YLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG-------------EGNDL-YP 192
++ V ++V +G EG R + G G D+ YP
Sbjct: 53 ------FTDTTTLFIV---ELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYP 103
Query: 193 GGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLEN 251
GG +FDPLG P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HL +
Sbjct: 104 GGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 163
Query: 252 P 252
P
Sbjct: 164 P 164
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 97/200 (48%), Gaps = 27/200 (13%)
Query: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 125
+P YLTG PGD G+D GL+ DPE E+++GRWAMLG G + PEV +
Sbjct: 62 SPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121
Query: 126 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 185
+ P W+ AG + +Y + S L V+ F +L VE R + G
Sbjct: 122 NV--PKWYAAGKE-------EYFA------SSSTLFVIEF--ILSHYVEIRRWQDIKNPG 164
Query: 186 EGNDLYPGGQYFDPLGLAD------DPVTFA---ELKVKEIKNGRLAMFSMFGFFVQAIV 236
N QY P G +P+ FA E K KEI NGRL M + GF +Q V
Sbjct: 165 SVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNV 223
Query: 237 TGKGPLENLLDHLENPVANN 256
TGKGP +NLL H+ +P N
Sbjct: 224 TGKGPFDNLLQHISDPWHNT 243
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 173 VEGFRINGLPGVGEGNDL---YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
VE + LPG+ L PG FDPLGLA+DP E+ NGR AM + G
Sbjct: 49 VEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 108
Query: 230 FFVQAIVTGKG 240
+ + T G
Sbjct: 109 MLLPEVFTSIG 119
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 96/181 (53%), Gaps = 32/181 (17%)
Query: 87 ADPEA---FARNRAL---EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPV-WFKAGAQI 139
+DPE F R L EVI+GR+AMLGA+G I PE L K + + + WF+ G I
Sbjct: 1 SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-I 59
Query: 140 FSEGGLDYLGNPNLVHAQSILAVLGF----------------QVVLMGLVEGFRINGLPG 183
G +Y + N +A++GF + +GL +GF
Sbjct: 60 PPAGTYNYWAD-NYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFG------ 112
Query: 184 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
G GN YPGG +F+PLG D + ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +
Sbjct: 113 -GSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQ 171
Query: 244 N 244
N
Sbjct: 172 N 172
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 80/166 (48%), Gaps = 26/166 (15%)
Query: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
E+++GRWAMLG G + PEV ++ P W+ AG + +Y + S
Sbjct: 11 ELVNGRWAMLGVAGMLLPEVFTSIGIINV--PKWYAAGKE-------EYFA------SSS 55
Query: 159 ILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLAD------DPVTFA-- 210
L V+ F +L VE R + G N QY P G +P+ FA
Sbjct: 56 TLFVIEF--ILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPT 113
Query: 211 -ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVAN 255
E K KEI NGRLAM + GF +Q VTGKGP +NLL H+ +P N
Sbjct: 114 LEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 159
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 84/180 (46%), Gaps = 27/180 (15%)
Query: 85 LSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGG 144
L+ DPE E+++GRWAMLG G + PEV ++ P W+ AG +
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINV--PKWYAAGKE------ 52
Query: 145 LDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLAD 204
+Y + S L V+ F +L VE R + G N QY P G
Sbjct: 53 -EYFA------SSSTLFVIEF--ILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG 103
Query: 205 ------DPVTFA---ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVAN 255
+P+ FA E K KEI NGRL M + GF +Q VTGKGP +NLL H+ +P N
Sbjct: 104 YPGGIFNPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 162
>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A
C-Kit Phosphopeptide
Length = 141
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268
E NGR F F+ Q V G + +L++H N A+ Y+ +PGS
Sbjct: 76 EHSNGR------FSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGS 122
>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 114 ITPEVLEKWLRVDFKEPVW-FKAGAQIFSEGG-----------LDYLGNPNL-VHAQSIL 160
ITPE+++K ++ K +W +A + F + G ++GNP L V++ S
Sbjct: 98 ITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKF 157
Query: 161 AVLGF-QVVLMGLVE-GFRING-LPGV 184
AV G Q L G +NG PG+
Sbjct: 158 AVRGLTQTAARDLAPLGITVNGYCPGI 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,866,138
Number of Sequences: 62578
Number of extensions: 404008
Number of successful extensions: 914
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 24
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)