Query 024395
Match_columns 268
No_of_seqs 244 out of 1196
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00025 photosystem II light 100.0 3E-77 6.5E-82 543.5 17.9 219 47-268 43-262 (262)
2 PLN00187 photosystem II light- 100.0 1.5E-67 3.4E-72 484.3 17.1 199 47-262 44-285 (286)
3 PLN00171 photosystem light-ha 100.0 3.4E-67 7.4E-72 487.2 17.8 215 47-261 100-322 (324)
4 PLN00098 light-harvesting comp 100.0 4.1E-66 9E-71 471.6 17.3 196 48-262 55-265 (267)
5 PLN00099 light-harvesting comp 100.0 4.7E-64 1E-68 453.4 15.2 191 53-259 42-234 (243)
6 PLN00097 photosystem I light h 100.0 8.9E-64 1.9E-68 451.0 16.0 191 49-258 38-243 (244)
7 PLN00101 Photosystem I light-h 100.0 1.1E-63 2.4E-68 452.0 15.3 190 47-260 45-248 (250)
8 PLN00048 photosystem I light h 100.0 6.6E-62 1.4E-66 443.5 16.3 201 48-261 35-259 (262)
9 PLN00147 light-harvesting comp 100.0 6.7E-62 1.4E-66 441.1 15.7 197 48-262 38-250 (252)
10 PLN00100 light-harvesting comp 100.0 1.1E-60 2.4E-65 430.6 14.4 176 53-260 33-208 (246)
11 PLN00170 photosystem II light- 100.0 1.6E-54 3.5E-59 392.7 13.7 173 52-246 48-254 (255)
12 PLN00089 fucoxanthin-chlorophy 100.0 9.9E-44 2.2E-48 315.4 14.5 162 61-243 42-208 (209)
13 PF00504 Chloroa_b-bind: Chlor 100.0 1.4E-43 3.1E-48 299.7 9.4 151 66-235 1-156 (156)
14 PLN00120 fucoxanthin-chlorophy 100.0 4E-36 8.6E-41 265.7 11.0 145 80-243 47-199 (202)
15 PLN00098 light-harvesting comp 99.6 7.9E-16 1.7E-20 141.3 6.2 55 190-244 78-132 (267)
16 PLN00101 Photosystem I light-h 99.6 1.1E-15 2.4E-20 139.3 5.9 53 190-242 69-121 (250)
17 PLN00147 light-harvesting comp 99.5 6.4E-15 1.4E-19 134.5 5.6 51 190-240 61-111 (252)
18 PLN00170 photosystem II light- 99.5 2.8E-14 6E-19 130.3 5.5 53 190-242 73-125 (255)
19 PLN00171 photosystem light-ha 99.5 3.8E-14 8.1E-19 132.9 5.1 53 190-242 126-178 (324)
20 PLN00097 photosystem I light h 99.5 4.4E-14 9.6E-19 128.3 5.5 52 190-241 60-111 (244)
21 PLN00025 photosystem II light 99.5 6.2E-14 1.3E-18 128.6 5.4 51 190-240 69-119 (262)
22 PLN00048 photosystem I light h 99.4 4.6E-14 9.9E-19 129.5 3.2 51 71-121 186-236 (262)
23 PLN00100 light-harvesting comp 99.4 1.2E-13 2.6E-18 125.5 5.1 48 190-237 51-98 (246)
24 PLN00089 fucoxanthin-chlorophy 99.4 1.4E-13 3.1E-18 122.7 3.7 50 72-121 153-203 (209)
25 PLN00187 photosystem II light- 99.4 1.6E-13 3.4E-18 127.1 3.6 51 71-121 211-261 (286)
26 PLN00099 light-harvesting comp 99.4 3E-13 6.6E-18 123.0 4.8 49 190-238 60-108 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.3 6.9E-13 1.5E-17 112.3 2.4 50 69-118 107-156 (156)
28 PLN00120 fucoxanthin-chlorophy 99.1 8.3E-11 1.8E-15 104.6 3.5 45 72-120 142-193 (202)
29 PHA02337 putative high light i 98.2 1.8E-06 4E-11 56.3 3.1 28 214-241 4-31 (35)
30 PLN00084 photosystem II subuni 98.1 2.6E-06 5.6E-11 74.0 3.4 50 207-256 130-180 (214)
31 PLN00014 light-harvesting-like 97.6 4.3E-05 9.3E-10 69.2 3.2 37 212-248 159-195 (250)
32 PHA02337 putative high light i 96.8 0.00057 1.2E-08 44.7 1.1 26 96-121 3-28 (35)
33 PLN00014 light-harvesting-like 93.6 0.024 5.2E-07 51.6 0.6 27 95-121 159-185 (250)
34 PLN00084 photosystem II subuni 88.6 0.21 4.5E-06 43.9 1.2 31 90-120 130-160 (214)
35 PLN02449 ferrochelatase 54.4 9.1 0.0002 38.7 2.4 21 222-242 463-483 (485)
36 PHA00649 hypothetical protein 28.3 53 0.0011 25.0 2.3 36 83-119 26-69 (83)
37 PF02026 RyR: RyR domain; Int 20.3 75 0.0016 24.9 1.9 20 89-108 15-36 (94)
No 1
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=3e-77 Score=543.53 Aligned_cols=219 Identities=84% Similarity=1.411 Sum_probs=205.8
Q ss_pred CCcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCC
Q 024395 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126 (268)
Q Consensus 47 ~~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~ 126 (268)
.+.||+|||++|||||+.++|+||||++|||||||||||++||++++||||+|||||||||||++||++||++++ .|+.
T Consensus 43 ~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~-~g~~ 121 (262)
T PLN00025 43 GSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAK-NGVK 121 (262)
T ss_pred cccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhc-CCcC
Confidence 467999999999999977899999999999999999999999999999999999999999999999999999986 6788
Q ss_pred CCcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCCCCCCCCCC-cCCCCCCCCCCCCCCC
Q 024395 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADD 205 (268)
Q Consensus 127 f~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~p~~g~g~~-~~PG~~~FDPLgl~~d 205 (268)
|.+++||++|.+++++|+++|+++|..++.|.+.+++++|+++||++|.+|+.+.+ .+++.| .||||+ ||||||.+|
T Consensus 122 ~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~-~~~~~d~~yPG~~-FDPlGl~~d 199 (262)
T PLN00025 122 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGP-LGEGLDPLYPGGS-FDPLGLADD 199 (262)
T ss_pred cCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCc-ccccccCcCCccc-CCccccCCC
Confidence 88889999999999999999999999989899989999999999999999987754 445445 899998 999999999
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhhhccCCCCC
Q 024395 206 PVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268 (268)
Q Consensus 206 p~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~~~~~~~~~ 268 (268)
+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+|||||+++++|+|++
T Consensus 200 ~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~~~~~~~ 262 (262)
T PLN00025 200 PDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYATNFVPGK 262 (262)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhhhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999975
No 2
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.5e-67 Score=484.26 Aligned_cols=199 Identities=42% Similarity=0.713 Sum_probs=173.8
Q ss_pred CCcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHH-----------------------------------
Q 024395 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA----------------------------------- 91 (268)
Q Consensus 47 ~~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~----------------------------------- 91 (268)
.+++|+++|++|+ |. .++|+||||++|||||||||||++|||.
T Consensus 44 ~~~~~~~~r~~w~-p~-~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (286)
T PLN00187 44 KSSKVGADRPLWF-PG-AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPF 121 (286)
T ss_pred CccCCCCCccccC-CC-CCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhccccccccccccccccccccc
Confidence 4679999999999 54 7999999999999999999999999986
Q ss_pred --------HHHHHHHHHhhccchhhccchhhhhhHhhhhccCCCCcchhhhcccccccCCCcccCCCCchhhHHHHHHHH
Q 024395 92 --------FARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVL 163 (268)
Q Consensus 92 --------l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~f~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~ 163 (268)
|+||||+|||||||||||++||++||++. | ..|+++|.+.+.++ .+|+++|... .+.+++
T Consensus 122 ~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~---G-----~~W~~aG~~~~~~g-~~y~g~~~p~---~~~~l~ 189 (286)
T PLN00187 122 QPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALT---G-----VTWQDAGKVELVDG-SSYLGQPLPF---SITTLI 189 (286)
T ss_pred CcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc---C-----Cccccccccccccc-ccccccccch---hHHHHH
Confidence 69999999999999999999999999974 3 25999998765544 4688877432 456778
Q ss_pred HHHHHHHhhhhceeecCCCCCCCCCCcCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchh
Q 024395 164 GFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243 (268)
Q Consensus 164 ~~qv~l~g~~E~~r~~~~p~~g~g~~~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~ 243 (268)
++|+++||++|.+|+.+.. .....||||++||||||.+|+++++++|++|||||||||+|++||++|+++||+||++
T Consensus 190 ~iqvllmG~~E~~R~~~~~---~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~ 266 (286)
T PLN00187 190 WIEVLVIGYIEFQRNAELD---PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 266 (286)
T ss_pred HHHHHHHHHHHhhhccCCC---CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHH
Confidence 8999999999999976521 1123799998899999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCccchhhhhhc
Q 024395 244 NLLDHLENPVANNAWVYAT 262 (268)
Q Consensus 244 nL~~hladP~~~n~~~~~~ 262 (268)
||.+|++||+||||++...
T Consensus 267 nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 267 NWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred HHHHHhcCcccccHHHhcc
Confidence 9999999999999986543
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=3.4e-67 Score=487.23 Aligned_cols=215 Identities=50% Similarity=0.903 Sum_probs=189.0
Q ss_pred CCcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCC
Q 024395 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126 (268)
Q Consensus 47 ~~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~ 126 (268)
.+.||+++|++||||+..++|+||||++|||||||||||++||++++||||+|||||||||||++|+++||++++..++.
T Consensus 100 ~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~~ 179 (324)
T PLN00171 100 ESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVH 179 (324)
T ss_pred cCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCccc
Confidence 57899999999999875589999999999999999999999999999999999999999999999999999988755566
Q ss_pred CCcchhhhcccccccCCCcccCCCCchh--hHHHHHHHHHHHHHHHhhhhceeecCCCC---CCC--CCC-cCCCCCCCC
Q 024395 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLV--HAQSILAVLGFQVVLMGLVEGFRINGLPG---VGE--GND-LYPGGQYFD 198 (268)
Q Consensus 127 f~~~~W~~ag~~~~~~g~l~y~~~p~~~--~~~~i~~i~~~qv~l~g~~E~~r~~~~p~---~g~--g~~-~~PG~~~FD 198 (268)
|.+++||++|...+....++|++.|... ..|.+..++++|+++|+.+|++|+.+... .+. ..| .||||.+||
T Consensus 180 ~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gYPGG~~FD 259 (324)
T PLN00171 180 FAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFD 259 (324)
T ss_pred cCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccCCcccCCC
Confidence 7788999999766666677888888643 24778889999999999999999875210 111 114 688887899
Q ss_pred CCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhhh
Q 024395 199 PLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYA 261 (268)
Q Consensus 199 PLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~~ 261 (268)
|||+.+|+++++++|++|||||||||+||+||++|+.+||++|++||.+|++||+||||+++.
T Consensus 260 PLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~ 322 (324)
T PLN00171 260 PLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322 (324)
T ss_pred ccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998764
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=4.1e-66 Score=471.61 Aligned_cols=196 Identities=42% Similarity=0.785 Sum_probs=168.8
Q ss_pred CcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCCC
Q 024395 48 ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127 (268)
Q Consensus 48 ~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~f 127 (268)
..+|+++|++|+ |. .++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||++++ .|+ +
T Consensus 55 ~~~~~~~r~~w~-Pg-~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~-~g~-~ 130 (267)
T PLN00098 55 CEPLPPDRPLWF-PG-SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLER-LGF-I 130 (267)
T ss_pred cccCCCCccccC-CC-CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCc-c
Confidence 467999999999 44 7999999999999999999999999999999999999999999999999999999876 454 4
Q ss_pred CcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCC--CC---C--------CCCCC-cCCC
Q 024395 128 KEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG---V--------GEGND-LYPG 193 (268)
Q Consensus 128 ~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~--p~---~--------g~g~~-~~PG 193 (268)
..+.|+++|.. +|+++|. .++++|+++||++|.+|+.+. +. . ....| +|||
T Consensus 131 ~~~~w~~Ag~~-------~~~~~~~--------~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPG 195 (267)
T PLN00098 131 ENFSWYDAGAR-------EYFADPT--------TLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPG 195 (267)
T ss_pred cccccccccch-------hhccCch--------HHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCC
Confidence 55689998864 4555542 356789999999999987541 10 0 00112 7999
Q ss_pred CCCCCCCCCC-CChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhhhc
Q 024395 194 GQYFDPLGLA-DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYAT 262 (268)
Q Consensus 194 ~~~FDPLgl~-~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~~~ 262 (268)
|++||||||. +|+++++++|+||||||||||+||+||++|+++||++|++||.+|++||+||||++..+
T Consensus 196 g~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~ 265 (267)
T PLN00098 196 GLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFT 265 (267)
T ss_pred CccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhcc
Confidence 9999999997 58999999999999999999999999999999999999999999999999999987654
No 5
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=4.7e-64 Score=453.36 Aligned_cols=191 Identities=41% Similarity=0.699 Sum_probs=163.3
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCCCCcchh
Q 024395 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVW 132 (268)
Q Consensus 53 ~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~f~~~~W 132 (268)
.+|..|+ |+ .++|+||||++|||+|||||||++++++++||||+|||||||||||++||++||+++. +.|
T Consensus 42 ~~~~~w~-P~-~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~--------~~w 111 (243)
T PLN00099 42 TMSADWM-PG-QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--------GNW 111 (243)
T ss_pred ccccccc-CC-CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------CCc
Confidence 3455666 66 7999999999999999999999999999999999999999999999999999998752 357
Q ss_pred hhcccc-cccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCCCCCCCCCCcCCCCCCCCCCCCCCChHHHHH
Q 024395 133 FKAGAQ-IFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAE 211 (268)
Q Consensus 133 ~~ag~~-~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~p~~g~g~~~~PG~~~FDPLgl~~dp~~~~~ 211 (268)
+++++. .+++|..+|+++|. ....+++++++|+++||++|.+|.... ++..+.|||| .||||||.+|++++++
T Consensus 112 ~~a~~~~~~~~g~~~~~g~~~--~~~~l~~~~~iqvl~ig~~E~~r~~~~---~~~~~~yPGd-~FDPlGl~kd~~~~~~ 185 (243)
T PLN00099 112 VKAQEWAAIPGGQATYLGNPV--PWGTLPTILAIEFLAIAFVEHQRSMEK---DPEKKKYPGG-AFDPLGYSKDPKKFEE 185 (243)
T ss_pred ccccchhccCcchhhhccCcc--chhhHHHHHHHHHHHHHHHHHHhhccC---CCCCCcCCCC-cCCcccccCCHHHHHH
Confidence 877652 45666677877764 234567788899999999999876432 1122489999 5999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH-hhcCCcchhhhhhhhcCCccchhhh
Q 024395 212 LKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENLLDHLENPVANNAWV 259 (268)
Q Consensus 212 ~k~kELkNGRLAMlA~~G~~~Q~-~vtG~gPl~nL~~hladP~~~n~~~ 259 (268)
+|+|||||||||||||+||++|+ .+||++|++||.+|++||+||||++
T Consensus 186 ~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~ 234 (243)
T PLN00099 186 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 234 (243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceee
Confidence 99999999999999999999998 6799999999999999999999875
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=8.9e-64 Score=450.96 Aligned_cols=191 Identities=39% Similarity=0.672 Sum_probs=162.8
Q ss_pred cccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCCCC
Q 024395 49 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFK 128 (268)
Q Consensus 49 ~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~f~ 128 (268)
.-..++|++|+ |. .++|+||||++|||||||||||++|+++++||||+|||||||||||++||++||++++ .|+ +.
T Consensus 38 ~~~~~~R~~w~-Pg-~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~-~g~-~~ 113 (244)
T PLN00097 38 VAAAADRPTWL-PG-KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTK-IGM-AD 113 (244)
T ss_pred cccCCCCcccC-CC-CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcC-CCc-cc
Confidence 34558999999 54 7999999999999999999999999999999999999999999999999999999976 565 33
Q ss_pred cchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCC--CC-CC-----------CCCC-cCCC
Q 024395 129 EPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG-VG-----------EGND-LYPG 193 (268)
Q Consensus 129 ~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~--p~-~g-----------~g~~-~~PG 193 (268)
.++||++++.. .|+.. ..+++.+|+++|+++|.+|+.+. |. .+ +..| .|||
T Consensus 114 ~p~W~~Ag~~~------~~~~~--------~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPg 179 (244)
T PLN00097 114 LPNWIDAAKWD------GYWAG--------AGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPK 179 (244)
T ss_pred CCccccCCcch------hcccc--------chhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCC
Confidence 57899998642 13221 12467789999999999987642 10 00 1113 6999
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhh
Q 024395 194 GQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAW 258 (268)
Q Consensus 194 ~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~ 258 (268)
+. ||||||.+|+++++++|+||||||||||+|++||++|+++||+||++||.+|++||+|||||
T Consensus 180 g~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 180 GL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 97 99999999999999999999999999999999999999999999999999999999999997
No 7
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=1.1e-63 Score=452.00 Aligned_cols=190 Identities=40% Similarity=0.737 Sum_probs=161.4
Q ss_pred CCcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCC
Q 024395 47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126 (268)
Q Consensus 47 ~~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~ 126 (268)
.+.++.++|++|+ |+ .++|+||||++|||+|||||||++|+++++|||++||+||||||||++|+++||++++ .|.
T Consensus 45 ~~~~~~~~r~~W~-P~-~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~-~g~- 120 (250)
T PLN00101 45 RSFKVEAKKGEWL-PG-LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTK-IGI- 120 (250)
T ss_pred ccccccccccccC-CC-CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC-CCC-
Confidence 3567788999999 66 8999999999999999999999999999999999999999999999999999999976 454
Q ss_pred CCcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCC--CC------CC------CCCCcCC
Q 024395 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG------VG------EGNDLYP 192 (268)
Q Consensus 127 f~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~--p~------~g------~g~~~~P 192 (268)
+..+.|+++|+. +|++.+ ..++++|+++||++|.+|+.+. |. .. .+...||
T Consensus 121 ~~~p~w~~ag~~-------~~~~~~--------~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YP 185 (250)
T PLN00101 121 INAPQWYDAGKA-------EYFASS--------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYP 185 (250)
T ss_pred cCCCccccccch-------hhcccc--------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCC
Confidence 345789998864 354433 2467789999999999997641 10 10 1112799
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhh
Q 024395 193 GGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVY 260 (268)
Q Consensus 193 G~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~ 260 (268)
||. ||||||+++ +++|+||||||||||+||+||++|+++||+||++||.+||+||+||||++.
T Consensus 186 GG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~ 248 (250)
T PLN00101 186 GGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQT 248 (250)
T ss_pred CCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhh
Confidence 997 999999876 378999999999999999999999999999999999999999999999864
No 8
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=6.6e-62 Score=443.50 Aligned_cols=201 Identities=46% Similarity=0.825 Sum_probs=168.6
Q ss_pred CcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHH------HHHHHHHHHHhhccchhhccchhhhhhHhhh
Q 024395 48 ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE------AFARNRALEVIHGRWAMLGALGCITPEVLEK 121 (268)
Q Consensus 48 ~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe------~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~ 121 (268)
..+++++|++|+ |. .++|+||||++|||||||||||+ ||+ +.+|+|++|||||||||||++|+++||++++
T Consensus 35 ~~~~~~~r~~w~-p~-~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~ 111 (262)
T PLN00048 35 PAKQGADRQLWF-AS-KQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGK 111 (262)
T ss_pred CCCCCCCCceec-CC-CCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhcc
Confidence 467789999999 54 89999999999999999999997 443 5799999999999999999999999999976
Q ss_pred hccCCCC--cchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCC--CC-------C------
Q 024395 122 WLRVDFK--EPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG-------V------ 184 (268)
Q Consensus 122 ~~G~~f~--~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~--p~-------~------ 184 (268)
.|+-.. ...|+++|+ +...+..+|+++|. +++++|+++||++|.+|+.+. |. .
T Consensus 112 -~g~~~~~~~~~w~~ag~-~~~~~~~~y~~~p~--------~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~ 181 (262)
T PLN00048 112 -AGLIPQETALPWFQSGV-IPPAGTYDYWADPY--------TLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGL 181 (262)
T ss_pred -CCccccccccccccccc-cccccccccccchh--------HHHHHHHHHhhheeeeccccccCCCcccccccccchhcc
Confidence 344111 235999986 33445567877652 467889999999999987651 10 0
Q ss_pred -CCCCCcCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhhh
Q 024395 185 -GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYA 261 (268)
Q Consensus 185 -g~g~~~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~~ 261 (268)
+.+...||||++||||||.+|+|+++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||++..
T Consensus 182 ~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~ 259 (262)
T PLN00048 182 GGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNL 259 (262)
T ss_pred ccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccc
Confidence 11123799998899999999999999999999999999999999999999999999999999999999999998654
No 9
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=6.7e-62 Score=441.10 Aligned_cols=197 Identities=41% Similarity=0.709 Sum_probs=166.7
Q ss_pred CcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCCC
Q 024395 48 ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127 (268)
Q Consensus 48 ~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~f 127 (268)
...++++|++|+ || .++|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++. .|+ +
T Consensus 38 ~~~~~~~R~~wl-P~-~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~-~g~-~ 113 (252)
T PLN00147 38 NPVVAQERPTWL-PG-LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRV-TGI-R 113 (252)
T ss_pred cccCCCCccccC-CC-CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhcc-CCC-c
Confidence 356779999999 66 7899999999999999999999999999999999999999999999999999999875 554 2
Q ss_pred CcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCC--CC--------CC-----CCC-CcC
Q 024395 128 KEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG--------VG-----EGN-DLY 191 (268)
Q Consensus 128 ~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~--p~--------~g-----~g~-~~~ 191 (268)
..+.|++++..++. + . ...+++++|+++||++|.+|+.+. |. .+ ++. +.|
T Consensus 114 ~~p~w~~ag~~~~~-----~-~--------~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~y 179 (252)
T PLN00147 114 NLPVWYEAGAVKFE-----F-A--------STRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGY 179 (252)
T ss_pred CCcchhhcccchhc-----c-c--------cchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCC
Confidence 34689998754321 1 1 123567789999999999886431 10 00 111 369
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhhhc
Q 024395 192 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYAT 262 (268)
Q Consensus 192 PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~~~ 262 (268)
|||++||||||.+|+++++++|+||||||||||+||+||++|+++||+||++||.+|++||+||||++..+
T Consensus 180 PGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~ 250 (252)
T PLN00147 180 PGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLS 250 (252)
T ss_pred cccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=1.1e-60 Score=430.64 Aligned_cols=176 Identities=38% Similarity=0.632 Sum_probs=151.6
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCCCCcchh
Q 024395 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVW 132 (268)
Q Consensus 53 ~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~f~~~~W 132 (268)
.+|++|+ || .++|+||||++|||||||||||++|+|+++||||+|||||||||||++|+++||+++. |.|
T Consensus 33 ~~r~~W~-P~-~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~--------P~w 102 (246)
T PLN00100 33 RARPMWY-PG-ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL--------PKF 102 (246)
T ss_pred CCCcccC-CC-CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc--------cch
Confidence 6788999 67 8999999999999999999999999999999999999999999999999999998642 568
Q ss_pred hhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCCCCCCCCCCcCCCCCCCCCCCCCCChHHHHHH
Q 024395 133 FKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAEL 212 (268)
Q Consensus 133 ~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~p~~g~g~~~~PG~~~FDPLgl~~dp~~~~~~ 212 (268)
+++|... |..+ +..++++|+++||++|.+|+.+....++ .++||++.||||||.+ +++
T Consensus 103 ~~ag~~~-------~~~~--------~~~l~~iqill~g~~E~~r~~~~~~~g~--~~~pg~~~FDPLGl~~-----~~~ 160 (246)
T PLN00100 103 WEAGAEK-------YGLD--------LQTLVLIQVVVMAVLEAARYRGFMKTGE--SGVLSFFPFDPTGMDS-----PEM 160 (246)
T ss_pred hhcchhh-------hccc--------hhHHHHHHHHHHHHHhhhcccccccccc--cCCCCCCCCCcccccH-----HHH
Confidence 8887542 2111 2356778999999999998875321222 3679999999999963 579
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhh
Q 024395 213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVY 260 (268)
Q Consensus 213 k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~ 260 (268)
|+||||||||||+||+||++|+++||++|++||.+|++||+||||++.
T Consensus 161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~ 208 (246)
T PLN00100 161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTS 208 (246)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccC
Confidence 999999999999999999999999999999999999999999999863
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=1.6e-54 Score=392.71 Aligned_cols=173 Identities=40% Similarity=0.703 Sum_probs=142.5
Q ss_pred CCCCccccCCCCC-----CCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCC
Q 024395 52 GPDRVKYLGPFSA-----QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126 (268)
Q Consensus 52 ~~~r~~~~gpf~~-----~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~ 126 (268)
..+|++|++ +.. .+|+||||++|||||||||||++|+|+++|||++||+||||||||++||++||++..
T Consensus 48 ~~~~k~w~p-~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g----- 121 (255)
T PLN00170 48 AQPKKSWIP-AVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG----- 121 (255)
T ss_pred cCCCccccC-CCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC-----
Confidence 367788883 421 479999999999999999999999999999999999999999999999999998752
Q ss_pred CCcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCC--CCC------------------CC
Q 024395 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV------------------GE 186 (268)
Q Consensus 127 f~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~--p~~------------------g~ 186 (268)
..|+++|.+. .+. .| ..+.+++++|+++||++|.+|+.+. |.. ..
T Consensus 122 ---~~w~~aG~~~------~~~-~p-----~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~ 186 (255)
T PLN00170 122 ---IPWFEAGADP------GAI-AP-----FSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANAT 186 (255)
T ss_pred ---CChhhCCccc------ccc-Cc-----cchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccC
Confidence 3599998642 111 12 2245788899999999999998652 100 00
Q ss_pred CCCcCCCCCCCCCCCCCC---------ChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhh
Q 024395 187 GNDLYPGGQYFDPLGLAD---------DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 246 (268)
Q Consensus 187 g~~~~PG~~~FDPLgl~~---------dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~ 246 (268)
+...|||+..||||||.+ |+++++++|+||||||||||+|++||++|+ .||++||+||.
T Consensus 187 g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 187 GLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred CCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 112799997799999985 789999999999999999999999999999 79999999985
No 12
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=9.9e-44 Score=315.45 Aligned_cols=162 Identities=30% Similarity=0.384 Sum_probs=120.5
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCC-CHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCCCCcchhhhccccc
Q 024395 61 PFSAQTPSYLTGEFPGDYGWDTAGLSA-DPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQI 139 (268)
Q Consensus 61 pf~~~~P~~L~G~~pGd~gfDPLGLs~-dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~f~~~~W~~ag~~~ 139 (268)
|| .+.|+.|||+ .||++||||||++ ++|+++|||++|||||||||||++|+++||.++ ++|..+ ++
T Consensus 42 pf-~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~-~pG~~~----~~------ 108 (209)
T PLN00089 42 GF-AAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVR-IPGEAY----SF------ 108 (209)
T ss_pred cc-ccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCccc----cc------
Confidence 56 5667789999 9999999999985 678899999999999999999999999999865 355310 11
Q ss_pred ccCCCcccCCCCchhhH-HHHHH-HHHHHHH-HHhhhhceeecCCCCCCCCCCcCCCCCCCCCCCCC-CChHHHHHHHHH
Q 024395 140 FSEGGLDYLGNPNLVHA-QSILA-VLGFQVV-LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLA-DDPVTFAELKVK 215 (268)
Q Consensus 140 ~~~g~l~y~~~p~~~~~-~~i~~-i~~~qv~-l~g~~E~~r~~~~p~~g~g~~~~PG~~~FDPLgl~-~dp~~~~~~k~k 215 (268)
.+.|+...+ +.++. .+++|++ +||++|..............+++|||++||||||. +|+++++++|++
T Consensus 109 --------~~~p~~~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~ 180 (209)
T PLN00089 109 --------AAIPKTIDAHDALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDK 180 (209)
T ss_pred --------cccccHHHHHHhhcccccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHH
Confidence 112222111 11222 2345764 69999953221111001112489999999999994 689999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHhhcCCcchh
Q 024395 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLE 243 (268)
Q Consensus 216 ELkNGRLAMlA~~G~~~Q~~vtG~gPl~ 243 (268)
||||||||||||+||++|+++||+++++
T Consensus 181 El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 181 ELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999998764
No 13
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=1.4e-43 Score=299.73 Aligned_cols=151 Identities=42% Similarity=0.748 Sum_probs=116.7
Q ss_pred CCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCC-C-CcchhhhcccccccCC
Q 024395 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD-F-KEPVWFKAGAQIFSEG 143 (268)
Q Consensus 66 ~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~-f-~~~~W~~ag~~~~~~g 143 (268)
+|+||||+++||+|||||||++++ +++|+||+|||||||||||++|++++|+++++++.. + ..+.|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 599999999999999999999887 899999999999999999999999999987644321 1 2233544321
Q ss_pred CcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCCCCC---CCCCCcCCCCCCCCCCCCCCChHHHHHHHHHHHhhh
Q 024395 144 GLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV---GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNG 220 (268)
Q Consensus 144 ~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~p~~---g~g~~~~PG~~~FDPLgl~~dp~~~~~~k~kELkNG 220 (268)
+ + .....++.+++++|++|.++....... ......+|||++|||+|+.+|+++++++|++|||||
T Consensus 74 -~-----~------~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NG 141 (156)
T PF00504_consen 74 -I-----P------VPAAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNG 141 (156)
T ss_dssp -S-----S------SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHH
T ss_pred -h-----h------hhhHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 0 0 011233455678999999876543211 112238999999999999989999999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 024395 221 RLAMFSMFGFFVQAI 235 (268)
Q Consensus 221 RLAMlA~~G~~~Q~~ 235 (268)
|||||||+|+++|+.
T Consensus 142 RlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 142 RLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999983
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=265.71 Aligned_cols=145 Identities=24% Similarity=0.371 Sum_probs=104.6
Q ss_pred ccccccC--CCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccC-CCCcchhhhcccccccCCCcccCCCCchh-h
Q 024395 80 WDTAGLS--ADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV-DFKEPVWFKAGAQIFSEGGLDYLGNPNLV-H 155 (268)
Q Consensus 80 fDPLGLs--~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~-~f~~~~W~~ag~~~~~~g~l~y~~~p~~~-~ 155 (268)
|||+||+ .|+++++|||++|||||||||||++||+++|...+++|. .+. | ..|.+.|+.. +
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~-------g--------~~~~~~p~~~~a 111 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYS-------G--------TSFSDIPNGFAA 111 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccc-------c--------ccccccccchhh
Confidence 9999997 478999999999999999999999999999975555542 110 0 0111222221 1
Q ss_pred HHHHHHHHHHHH-HHHhhhhceeecCCCCCCCCCCcCCCCCCCC--CCCCCC-ChHHHHHHHHHHHhhhhHHHHHHHHHH
Q 024395 156 AQSILAVLGFQV-VLMGLVEGFRINGLPGVGEGNDLYPGGQYFD--PLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231 (268)
Q Consensus 156 ~~~i~~i~~~qv-~l~g~~E~~r~~~~p~~g~g~~~~PG~~~FD--PLgl~~-dp~~~~~~k~kELkNGRLAMlA~~G~~ 231 (268)
...++...++|+ +++|++|..+.... ++.+++|||+.++ ++||.. |+++++++|+|||||||||||||+||+
T Consensus 112 ~~~vp~~g~~qi~~~ig~~E~~~~~~~----~~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~ 187 (202)
T PLN00120 112 LDAIPTAGLLQILAFIGFLELAVMKDI----TGEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALM 187 (202)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccc----ccCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444556776 57999998654321 1124778864322 455542 789999999999999999999999999
Q ss_pred HHHhhcCCcchh
Q 024395 232 VQAIVTGKGPLE 243 (268)
Q Consensus 232 ~Q~~vtG~gPl~ 243 (268)
+|+.++|+.|+-
T Consensus 188 ~qe~l~g~~~~~ 199 (202)
T PLN00120 188 VHEQLGVELPII 199 (202)
T ss_pred HHHHccCCCcCC
Confidence 999999998863
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.60 E-value=7.9e-16 Score=141.34 Aligned_cols=55 Identities=33% Similarity=0.542 Sum_probs=51.9
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhh
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 244 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~n 244 (268)
.+|||++||||||.+|+++++++|++||||||+||+|++|+++|+++++.+++++
T Consensus 78 ~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 78 SLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred CCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 5799999999999999999999999999999999999999999999998887764
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.59 E-value=1.1e-15 Score=139.26 Aligned_cols=53 Identities=38% Similarity=0.649 Sum_probs=51.1
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcch
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl 242 (268)
.+|||++||||||.+|+++++++|++|||||||||||++|+++||++|+++++
T Consensus 69 ~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 69 SLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 67999999999999999999999999999999999999999999999998876
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.54 E-value=6.4e-15 Score=134.45 Aligned_cols=51 Identities=29% Similarity=0.498 Sum_probs=48.7
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCc
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~g 240 (268)
.+|||++||||||.+|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 61 ~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 61 TLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 789999999999999999999999999999999999999999999998755
No 18
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.48 E-value=2.8e-14 Score=130.30 Aligned_cols=53 Identities=36% Similarity=0.550 Sum_probs=49.6
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcch
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl 242 (268)
.+|||++||||+|.+|+++++++|.+||+|||+||+|++|+++|+++||...+
T Consensus 73 ~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~ 125 (255)
T PLN00170 73 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 125 (255)
T ss_pred cCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChh
Confidence 57999999999999999999999999999999999999999999999986433
No 19
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.47 E-value=3.8e-14 Score=132.88 Aligned_cols=53 Identities=32% Similarity=0.495 Sum_probs=49.4
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcch
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl 242 (268)
..|||++||||||++|+++++++|.+||||||+||||++|+++|+++++.+.+
T Consensus 126 ~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 126 ELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred CCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 67999999999999999999999999999999999999999999998866543
No 20
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.47 E-value=4.4e-14 Score=128.30 Aligned_cols=52 Identities=29% Similarity=0.421 Sum_probs=49.4
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcc
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gP 241 (268)
..|||++||||||++|+++++++|.+||||||+||+|++|+++||++++.+.
T Consensus 60 ~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 60 SLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 5799999999999999999999999999999999999999999999998754
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.45 E-value=6.2e-14 Score=128.58 Aligned_cols=51 Identities=31% Similarity=0.561 Sum_probs=48.2
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCc
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~g 240 (268)
..|||++||||||++||++++++|.+||||||+||+|++|+++||++++.+
T Consensus 69 ~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 69 EFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 569999999999999999999999999999999999999999999998654
No 22
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.44 E-value=4.6e-14 Score=129.55 Aligned_cols=51 Identities=25% Similarity=0.443 Sum_probs=47.7
Q ss_pred CCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhh
Q 024395 71 TGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121 (268)
Q Consensus 71 ~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~ 121 (268)
|..+|||++||||||++|+|+++++|..||||||+||+|++||++|++++.
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg 236 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTG 236 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcC
Confidence 346999999999999999999999999999999999999999999999864
No 23
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.42 E-value=1.2e-13 Score=125.52 Aligned_cols=48 Identities=35% Similarity=0.504 Sum_probs=46.3
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhc
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vt 237 (268)
.+|||++||||||++|+++++++|.+||||||+||+|++|+++|++++
T Consensus 51 ~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 51 TMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 789999999999999999999999999999999999999999999975
No 24
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.40 E-value=1.4e-13 Score=122.70 Aligned_cols=50 Identities=28% Similarity=0.490 Sum_probs=46.3
Q ss_pred CCCCCCCCccccccC-CCHHHHHHHHHHHHhhccchhhccchhhhhhHhhh
Q 024395 72 GEFPGDYGWDTAGLS-ADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121 (268)
Q Consensus 72 G~~pGd~gfDPLGLs-~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~ 121 (268)
++.|||+||||+||. +|+++++++|..||||||+||+|++|++++|+++.
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg 203 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITG 203 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC
Confidence 478999999999994 68999999999999999999999999999998753
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.39 E-value=1.6e-13 Score=127.14 Aligned_cols=51 Identities=31% Similarity=0.433 Sum_probs=47.6
Q ss_pred CCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhh
Q 024395 71 TGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121 (268)
Q Consensus 71 ~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~ 121 (268)
+..+|||++||||||++|+|+++++|+.|||||||||+|++|+++|+.++.
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg 261 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG 261 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence 345899999999999999999999999999999999999999999999864
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.38 E-value=3e-13 Score=122.95 Aligned_cols=49 Identities=31% Similarity=0.432 Sum_probs=46.6
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcC
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG 238 (268)
..|||++||||+|++++++++++|.+||||||+||+|++|+++||+++.
T Consensus 60 ~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 60 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999999753
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.31 E-value=6.9e-13 Score=112.27 Aligned_cols=50 Identities=38% Similarity=0.614 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhH
Q 024395 69 YLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 118 (268)
Q Consensus 69 ~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~ 118 (268)
..++..|||++|||+||.+|++..+++|.+||+|||+||+|++|++++|.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56789999999999999988999999999999999999999999999983
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.06 E-value=8.3e-11 Score=104.57 Aligned_cols=45 Identities=44% Similarity=0.778 Sum_probs=38.9
Q ss_pred CCCCCC-------CCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhh
Q 024395 72 GEFPGD-------YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120 (268)
Q Consensus 72 G~~pGd-------~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~ 120 (268)
++.||| +||||+ |+|+.+++|..||||||+||+|++|++++|.+.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~ 193 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSF----DEETKLKKRAIELNQGRAAQMGILALMVHEQLG 193 (202)
T ss_pred CCCCCccCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 578995 455554 788899999999999999999999999999874
No 29
>PHA02337 putative high light inducible protein
Probab=98.16 E-value=1.8e-06 Score=56.31 Aligned_cols=28 Identities=32% Similarity=0.239 Sum_probs=25.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhcCCcc
Q 024395 214 VKEIKNGRLAMFSMFGFFVQAIVTGKGP 241 (268)
Q Consensus 214 ~kELkNGRLAMlA~~G~~~Q~~vtG~gP 241 (268)
..|+-||||||++|+..+.-|++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4799999999999999999999999964
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.08 E-value=2.6e-06 Score=73.95 Aligned_cols=50 Identities=36% Similarity=0.415 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhc-CCcchhhhhhhhcCCccch
Q 024395 207 VTFAELKVKEIKNGRLAMFSMFGFFVQAIVT-GKGPLENLLDHLENPVANN 256 (268)
Q Consensus 207 ~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vt-G~gPl~nL~~hladP~~~n 256 (268)
...++.|..|+.||||||++|+--++-|.+| |+||+.||.....-|....
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~ 180 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDE 180 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhh
Confidence 4567788999999999999999999999999 9999999998888887664
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.60 E-value=4.3e-05 Score=69.17 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=33.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhh
Q 024395 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 248 (268)
Q Consensus 212 ~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~h 248 (268)
+...|+-|||+|||||+..++-|++||+|.+.++...
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 4458999999999999999999999999999998653
No 32
>PHA02337 putative high light inducible protein
Probab=96.77 E-value=0.00057 Score=44.70 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.4
Q ss_pred HHHHHhhccchhhccchhhhhhHhhh
Q 024395 96 RALEVIHGRWAMLGALGCITPEVLEK 121 (268)
Q Consensus 96 ReaELkHGR~AMLAv~G~lvpE~l~~ 121 (268)
.++|..+||+||+|++-.+..|+++.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tG 28 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTG 28 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=93.65 E-value=0.024 Score=51.64 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=24.0
Q ss_pred HHHHHHhhccchhhccchhhhhhHhhh
Q 024395 95 NRALEVIHGRWAMLGALGCITPEVLEK 121 (268)
Q Consensus 95 ~ReaELkHGR~AMLAv~G~lvpE~l~~ 121 (268)
+.++|+.+||+||+|++-.++.|.++.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG 185 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTG 185 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcC
Confidence 456999999999999999999998763
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=88.61 E-value=0.21 Score=43.91 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhccchhhccchhhhhhHhh
Q 024395 90 EAFARNRALEVIHGRWAMLGALGCITPEVLE 120 (268)
Q Consensus 90 e~l~~~ReaELkHGR~AMLAv~G~lvpE~l~ 120 (268)
...+..+.-|+.+||+||||++--++.|+++
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lT 160 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVT 160 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHh
Confidence 4566777789999999999999999999987
No 35
>PLN02449 ferrochelatase
Probab=54.37 E-value=9.1 Score=38.71 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhcCCcch
Q 024395 222 LAMFSMFGFFVQAIVTGKGPL 242 (268)
Q Consensus 222 LAMlA~~G~~~Q~~vtG~gPl 242 (268)
+||+||+.+++-|+++|+||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999997
No 36
>PHA00649 hypothetical protein
Probab=28.27 E-value=53 Score=25.01 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=25.3
Q ss_pred cccC-CCHHHHHHHHHHHHhhcc-------chhhccchhhhhhHh
Q 024395 83 AGLS-ADPEAFARNRALEVIHGR-------WAMLGALGCITPEVL 119 (268)
Q Consensus 83 LGLs-~dpe~l~~~ReaELkHGR-------~AMLAv~G~lvpE~l 119 (268)
||.- .+|+.++.||| .+.|+| -.||+++|..+..+.
T Consensus 26 LGVD~~~P~~VEEFr~-D~~~~Rr~RKA~D~G~L~~VGL~~~~iG 69 (83)
T PHA00649 26 LGVDVDVPEQVEEFRE-DLRFGRRMRKAADHGFLALVGLVAVALG 69 (83)
T ss_pred HcCCCCCHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 4442 47887777775 677777 368999998876653
No 37
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=20.32 E-value=75 Score=24.91 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=15.8
Q ss_pred HHHHHHHHH--HHHhhccchhh
Q 024395 89 PEAFARNRA--LEVIHGRWAML 108 (268)
Q Consensus 89 pe~l~~~Re--aELkHGR~AML 108 (268)
+..++.++| ||..|=|||+=
T Consensus 15 ~~~l~~~~E~lAen~H~~Wa~~ 36 (94)
T PF02026_consen 15 PPELEELIEKLAENEHDRWAKE 36 (94)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777 89999999984
Done!