Query 024395
Match_columns 268
No_of_seqs 244 out of 1196
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 07:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 8.6E-76 3E-80 526.7 15.4 225 41-268 7-232 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 4.4E-66 1.5E-70 464.4 6.8 194 49-260 5-241 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 1.6E-63 5.5E-68 454.7 -0.7 194 48-261 57-266 (269)
4 2wsc_3 LHCA3, type II chloroph 100.0 9.4E-63 3.2E-67 451.1 2.1 201 49-262 50-274 (276)
5 2wsc_1 AT3G54890, LHCA1; photo 100.0 9E-62 3.1E-66 437.4 4.0 190 56-261 46-237 (241)
6 2wsc_4 Chlorophyll A-B binding 100.0 2E-61 6.9E-66 437.6 -1.3 190 48-262 45-249 (251)
7 2bhw_A Chlorophyll A-B binding 99.4 8E-14 2.7E-18 124.8 6.3 49 190-238 39-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 8.7E-15 3E-19 132.4 -0.6 53 190-242 69-121 (251)
9 2wsc_2 LHCA2, type II chloroph 99.4 2.4E-14 8.4E-19 130.6 1.2 53 190-242 80-132 (269)
10 3pl9_A Chlorophyll A-B binding 99.4 7.8E-14 2.7E-18 125.4 2.8 48 73-121 172-219 (243)
11 2wsc_3 LHCA3, type II chloroph 99.3 1.1E-13 3.8E-18 126.6 -0.4 52 70-121 199-250 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.3 3.1E-13 1.1E-17 121.6 0.6 48 190-237 61-108 (241)
13 2dpr_A CON-T(K7GLA); conantoxi 48.8 10 0.00035 21.9 1.9 15 89-103 6-20 (26)
14 3nrt_A Putative ryanodine rece 32.8 16 0.00055 28.2 1.4 21 88-108 23-45 (103)
15 2rqh_A G1 to S phase transitio 27.1 27 0.00091 20.4 1.3 16 250-267 1-16 (26)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=8.6e-76 Score=526.74 Aligned_cols=225 Identities=77% Similarity=1.313 Sum_probs=206.1
Q ss_pred CccccCCCcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhh
Q 024395 41 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120 (268)
Q Consensus 41 ~~~~~~~~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~ 120 (268)
+|...+.+.||++||++|+|||+.++|+||||++|||||||||||++|+|+++||||+|||||||||||++|+++||+++
T Consensus 7 ~~~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~ 86 (232)
T 2bhw_A 7 KKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLS 86 (232)
T ss_dssp ---CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhc
Confidence 45555568999999999999986699999999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCCCcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCCCCCCCCCC-cCCCCCCCCC
Q 024395 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDP 199 (268)
Q Consensus 121 ~~~G~~f~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~p~~g~g~~-~~PG~~~FDP 199 (268)
+ .|+.|+++.|+++|.+++.+++++|+++|...+.|++.+++++|+++||++|.+|+.+++ .++..| .||||+ |||
T Consensus 87 ~-~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~-~g~~~d~~~Pg~~-fdP 163 (232)
T 2bhw_A 87 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDP 163 (232)
T ss_dssp T-TTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEET-TEECSSSSCCCTT-SCT
T ss_pred c-CCcCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCc-ccccccccCCCcc-ccc
Confidence 7 688888899999998888888899999998888898999999999999999999887644 333334 799998 999
Q ss_pred CCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhhhccCCCCC
Q 024395 200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS 268 (268)
Q Consensus 200 Lgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~~~~~~~~~ 268 (268)
|||.+|+++++++|++|||||||||+||+|+++|+.+||++|++||.+|++||+||||++++++|+|++
T Consensus 164 lgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~~~~~~ 232 (232)
T 2bhw_A 164 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232 (232)
T ss_dssp TCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTTTCSCC
T ss_pred chhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999985
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=4.4e-66 Score=464.37 Aligned_cols=194 Identities=43% Similarity=0.705 Sum_probs=134.0
Q ss_pred cccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHH-------------------------------------
Q 024395 49 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA------------------------------------- 91 (268)
Q Consensus 49 ~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~------------------------------------- 91 (268)
+|++++|++|++ +.++|+||||++|||||||||||+++||.
T Consensus 5 ~~~~~~r~~w~p--g~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 5 SGFSTDRPLWYP--GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccC--CCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 577899999995 48999999999999999999999999873
Q ss_pred ------HHHHHHHHHhhccchhhccchhhhhhHhhhhccCCCCcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHH
Q 024395 92 ------FARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 165 (268)
Q Consensus 92 ------l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~f~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~ 165 (268)
++||||+|||||||||||++||++||+++. ..|+++|.+.+. ++++|+++|.. +.+.+++++
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~-~g~~y~g~p~~---~~i~~l~~~ 150 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELI-EGSSYLGQPLP---FSMTTLIWI 150 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHH-SCEEETTEEEC---CCHHHHHHH
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------cccccccccccc-cccccccCccc---hhhHHHHHH
Confidence 789999999999999999999999999853 369999876554 46789888763 346678889
Q ss_pred HHHHHhhhhceeecCCCCCCCCCCcCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhh
Q 024395 166 QVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245 (268)
Q Consensus 166 qv~l~g~~E~~r~~~~p~~g~g~~~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL 245 (268)
|+++||++|.+|+.+.. .....||||+ ||||||.+|+++++++|++||||||||||||+|+++|+++||+||++||
T Consensus 151 qv~lmG~~E~~R~~~~~---~~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l 226 (243)
T 3pl9_A 151 EVLVIGYIEFQRNAELD---TEKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNW 226 (243)
T ss_dssp HHHHHHHHHHHHHSCCC---TTTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHhhcccC---CccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHH
Confidence 99999999999987521 1123799998 9999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCccchhhhh
Q 024395 246 LDHLENPVANNAWVY 260 (268)
Q Consensus 246 ~~hladP~~~n~~~~ 260 (268)
.+|++||+||||++.
T Consensus 227 ~~HladP~~~ni~~~ 241 (243)
T 3pl9_A 227 VTHLSDPLHTTILDR 241 (243)
T ss_dssp HHHHHCSGGGSTTTT
T ss_pred HHHhcCcchhhhhhh
Confidence 999999999999753
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=1.6e-63 Score=454.72 Aligned_cols=194 Identities=41% Similarity=0.793 Sum_probs=130.4
Q ss_pred CcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCCC
Q 024395 48 ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF 127 (268)
Q Consensus 48 ~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~f 127 (268)
..+|+|+|++|++ + .++|+||||++|||||||||||++|||+++||||+|||||||||||++|+++||++++ .|+.
T Consensus 57 ~~~~~~~r~~wlp-g-~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~-~G~~- 132 (269)
T 2wsc_2 57 CTVAEPDRPLWFP-G-STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTK-LGIL- 132 (269)
T ss_dssp ---------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCC-TTSS-
T ss_pred ecccCCCcccccC-C-CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhcc-CCcc-
Confidence 3589999999995 4 8999999999999999999999999999999999999999999999999999999986 4543
Q ss_pred CcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCC--C-------CC-C---CCCC-cCCC
Q 024395 128 KEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--P-------GV-G---EGND-LYPG 193 (268)
Q Consensus 128 ~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~--p-------~~-g---~g~~-~~PG 193 (268)
..+.|+++|.. +|+.++. +++++|+++||++|.+|+.+. + .. + +..| .|||
T Consensus 133 ~~p~w~~aG~~-------~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG 197 (269)
T 2wsc_2 133 NTPSWYTAGEQ-------EYFTDTT--------TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPG 197 (269)
T ss_dssp SCCCCCSTTSS-------SSCCCTT--------SHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTT
T ss_pred cCccccccchh-------hhhcchH--------HHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCC
Confidence 45779987653 4554432 346778889999999886531 1 00 0 1112 7999
Q ss_pred CCCCCCCCCC-CChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhh-hhhcCCccchhhhhh
Q 024395 194 GQYFDPLGLA-DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL-DHLENPVANNAWVYA 261 (268)
Q Consensus 194 ~~~FDPLgl~-~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~-~hladP~~~n~~~~~ 261 (268)
|++||||||. +|+++++++|++||||||||||||+|+++|+++||+||++||. +|++|| ||||+++.
T Consensus 198 ~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~ 266 (269)
T 2wsc_2 198 GLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAF 266 (269)
T ss_dssp CSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSS
T ss_pred CcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhc
Confidence 9999999997 4788899999999999999999999999999999999999999 999999 99998654
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=9.4e-63 Score=451.07 Aligned_cols=201 Identities=43% Similarity=0.776 Sum_probs=113.3
Q ss_pred cccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHH------HHHHHHHHhhccchhhccchhhhhhHhhhh
Q 024395 49 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAF------ARNRALEVIHGRWAMLGALGCITPEVLEKW 122 (268)
Q Consensus 49 ~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l------~~~ReaELkHGR~AMLAv~G~lvpE~l~~~ 122 (268)
.+|++||++|+ |+ .++|+||||++||||||||||| +|||++ +|+||+|||||||||||++|++++|++++
T Consensus 50 ~~~g~~R~~wl-P~-~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~- 125 (276)
T 2wsc_3 50 VKQGSDRPLWF-AS-KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK- 125 (276)
T ss_dssp --------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSS-
T ss_pred cccCCCccccC-CC-CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcc-
Confidence 45999999999 66 8999999999999999999999 688989 99999999999999999999999999876
Q ss_pred ccCCCC-cc-hhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecC----C-----CCC------C
Q 024395 123 LRVDFK-EP-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING----L-----PGV------G 185 (268)
Q Consensus 123 ~G~~f~-~~-~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~----~-----p~~------g 185 (268)
.|+.+. .+ .|++++. +...|..+|++++. .++++|+++||++|.+|+.+ + +.. .
T Consensus 126 ~g~~~~~~p~~w~~~g~-ip~aG~~~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~ 196 (276)
T 2wsc_3 126 AGLIPQETALPWFRTGF-IPPAGTYNYWADSY--------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLG 196 (276)
T ss_dssp CCCCCCSSCCSSSSCCC-C-----CCCSCCCC--------STTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCC
T ss_pred cccccccCcchhhhhhc-ccchhHHHHhccch--------HHHHHHHHHHHHHHHhhhcccccCCccccccccccccccc
Confidence 465433 23 4998665 44456667887764 34677889999999988642 1 101 1
Q ss_pred CCCC-cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhhhc
Q 024395 186 EGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYAT 262 (268)
Q Consensus 186 ~g~~-~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~~~ 262 (268)
+..| .||||++||||||.+|+++++++|++||||||||||||+|+++|+++||++|++||.+|++||+||||+++.+
T Consensus 197 ~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~ 274 (276)
T 2wsc_3 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLK 274 (276)
T ss_dssp CCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC------------------
T ss_pred ccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhcc
Confidence 1112 7999999999999988888999999999999999999999999999999999999999999999999987654
No 5
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=9e-62 Score=437.37 Aligned_cols=190 Identities=42% Similarity=0.718 Sum_probs=140.9
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCCCCcchhhhc
Q 024395 56 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKA 135 (268)
Q Consensus 56 ~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~f~~~~W~~a 135 (268)
++|+ |+ .++|+||||++|||||||||||++|+|+++||||+|||||||||||++|+++||+++. +.|+++
T Consensus 46 ~~w~-P~-~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~~~~~a 115 (241)
T 2wsc_1 46 AHWM-PG-EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------GNWVKA 115 (241)
T ss_dssp -----------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C-----
T ss_pred cccC-CC-CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------Cccccc
Confidence 3455 45 7899999999999999999999999999999999999999999999999999998753 356666
Q ss_pred ccc-cccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCCCCCCCCCCcCCCCCCCCCCCCCCChHHHHHHHH
Q 024395 136 GAQ-IFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKV 214 (268)
Q Consensus 136 g~~-~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~p~~g~g~~~~PG~~~FDPLgl~~dp~~~~~~k~ 214 (268)
+.. .++++..+|+++|. +.+.++.++++|+++||++|.+|..... ...+.||||. |||||+.+|+++++++|+
T Consensus 116 ~~~~~~~~g~a~~~~~~~--~~~~~~~i~~iq~l~ig~~E~~r~~~~~---~~~~~yPgg~-fDPlgl~~~~~~~~~~r~ 189 (241)
T 2wsc_1 116 QEWAALPGGQATYLGNPV--PWGTLPTILAIEFLAIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGYSKDPKKLEELKV 189 (241)
T ss_dssp CCCCSCSSCSSCCSSSCS--SSSSHHHHHHHHHHHTHHHHHHHTSCCS---SCCSSSCSCC-SCSSSCSCSSSSCCCSCT
T ss_pred cchhccCCcchhhhcCcc--hHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCCCCCCCc-ccccccccchhHHHHHHH
Confidence 532 35566677877763 2344567788999999999999875421 1124799995 999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHH-hhcCCcchhhhhhhhcCCccchhhhhh
Q 024395 215 KEIKNGRLAMFSMFGFFVQA-IVTGKGPLENLLDHLENPVANNAWVYA 261 (268)
Q Consensus 215 kELkNGRLAMlA~~G~~~Q~-~vtG~gPl~nL~~hladP~~~n~~~~~ 261 (268)
+|||||||||+|++|+++|+ .+||+||++||.+|++||+||||++..
T Consensus 190 ~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~ 237 (241)
T 2wsc_1 190 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 237 (241)
T ss_dssp THHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC-------
T ss_pred hhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeee
Confidence 99999999999999999999 589999999999999999999987643
No 6
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=2e-61 Score=437.64 Aligned_cols=190 Identities=37% Similarity=0.657 Sum_probs=126.0
Q ss_pred CcccCC-CCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCC
Q 024395 48 ELWYGP-DRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126 (268)
Q Consensus 48 ~~w~~~-~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~ 126 (268)
..||+| ||++|++ + .++|+||||++|||||||||||++|||+++|||++|||||||||||++|++++|+++. .|+.
T Consensus 45 ~~~~~~~~r~~~~p-g-~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~-~g~~ 121 (251)
T 2wsc_4 45 ASFKVEAKKGEWLP-G-LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTS-IGII 121 (251)
T ss_dssp --------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCC-SCSS
T ss_pred ccccCcchhhhccC-C-CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcc
Confidence 358999 8999995 4 7899999999999999999999999999999999999999999999999999999876 4543
Q ss_pred CCcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecC----CC-----CC-C---CCCC-cCC
Q 024395 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING----LP-----GV-G---EGND-LYP 192 (268)
Q Consensus 127 f~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~----~p-----~~-g---~g~~-~~P 192 (268)
..+.|+++|.. +|++++. .++++|+++||++|.+|+.+ ++ .. + +..| .||
T Consensus 122 -~~p~w~~aG~~-------~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yP 185 (251)
T 2wsc_4 122 -NVPKWYAAGKE-------EYFASSS--------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYP 185 (251)
T ss_dssp -CCCCCSCCCSS-------SCSSCSS--------CTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSS
T ss_pred -CCccccccchH-------hhhccch--------HHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCC
Confidence 45779987653 4555542 23466888999999987642 11 00 0 1112 799
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhhhc
Q 024395 193 GGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYAT 262 (268)
Q Consensus 193 G~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~~~ 262 (268)
||+ ||||++.+ ++++|+|||||||| ||||+||++|+++||++|++||.+|++||+||||+++++
T Consensus 186 Gg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 249 (251)
T 2wsc_4 186 GGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLG 249 (251)
T ss_dssp CCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC---
T ss_pred CCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhc
Confidence 998 99999975 67899999999999 999999999999999999999999999999999987654
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.44 E-value=8e-14 Score=124.84 Aligned_cols=49 Identities=29% Similarity=0.524 Sum_probs=46.8
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcC
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 238 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG 238 (268)
.+|||++||||||++|+++++++|..||||||+||+|++|+++||+++.
T Consensus 39 ~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 39 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 5799999999999999999999999999999999999999999999864
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.43 E-value=8.7e-15 Score=132.42 Aligned_cols=53 Identities=38% Similarity=0.657 Sum_probs=39.5
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcch
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl 242 (268)
.+|||++||||||++|+|+++++|.+||||||+||+|++|+++||++|+.+++
T Consensus 69 ~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 57999999999999999999999999999999999999999999999998876
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.41 E-value=2.4e-14 Score=130.56 Aligned_cols=53 Identities=36% Similarity=0.547 Sum_probs=36.6
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcch
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl 242 (268)
.+|||++||||||.+|+|+++++|.+||||||+||+|++|+++||++++.|.+
T Consensus 80 ~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp --------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 56999999999999999999999999999999999999999999999977654
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.39 E-value=7.8e-14 Score=125.36 Aligned_cols=48 Identities=33% Similarity=0.544 Sum_probs=45.7
Q ss_pred CCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhh
Q 024395 73 EFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121 (268)
Q Consensus 73 ~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~ 121 (268)
.+|||+ ||||||++|+|+++++|++||||||+||+|++|++++|+++.
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG 219 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTG 219 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcC
Confidence 589999 999999999999999999999999999999999999999864
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.32 E-value=1.1e-13 Score=126.65 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=42.8
Q ss_pred CCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhh
Q 024395 70 LTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK 121 (268)
Q Consensus 70 L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~ 121 (268)
.|..+|||++||||||++|+++++++|++||||||+||||++|++++|+++.
T Consensus 199 ~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg 250 (276)
T 2wsc_3 199 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTG 250 (276)
T ss_dssp SSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCS
T ss_pred ccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 3557899999999999988888999999999999999999999999998763
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.29 E-value=3.1e-13 Score=121.56 Aligned_cols=48 Identities=33% Similarity=0.538 Sum_probs=45.6
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhc
Q 024395 190 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237 (268)
Q Consensus 190 ~~PG~~~FDPLgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vt 237 (268)
..|||++||||||++|+++++++|.+||||||+||+|++|+++|++++
T Consensus 61 ~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred CCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 469999999999999999999999999999999999999999999865
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=48.85 E-value=10 Score=21.87 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhc
Q 024395 89 PEAFARNRALEVIHG 103 (268)
Q Consensus 89 pe~l~~~ReaELkHG 103 (268)
+|.+..+||+|+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 467889999999853
No 14
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative, structural genomics, MI center for structural genomics (MCSG); 2.54A {Bacteroides thetaiotaomicron}
Probab=32.78 E-value=16 Score=28.15 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=15.8
Q ss_pred CHHHHHHHHH--HHHhhccchhh
Q 024395 88 DPEAFARNRA--LEVIHGRWAML 108 (268)
Q Consensus 88 dpe~l~~~Re--aELkHGR~AML 108 (268)
-|..+...+| ||..|.||||=
T Consensus 23 L~~~le~lvE~LAen~H~~Wa~~ 45 (103)
T 3nrt_A 23 LPESLIQLSERIAENVHEVWAKA 45 (103)
T ss_dssp CCHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666 79999999974
No 15
>2rqh_A G1 to S phase transition 1; protein-protein complex, GTP-binding, nucleotide-binding, Al splicing, cytoplasm, methylation, mRNA processing; NMR {Mus musculus}
Probab=27.05 E-value=27 Score=20.42 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=12.5
Q ss_pred cCCccchhhhhhccCCCC
Q 024395 250 ENPVANNAWVYATKFVPG 267 (268)
Q Consensus 250 adP~~~n~~~~~~~~~~~ 267 (268)
+-||.-|| .++.|||+
T Consensus 1 AKPFVPnv--~a~eFvps 16 (26)
T 2rqh_A 1 AKPFVPNV--HAAEFVPS 16 (26)
T ss_dssp CCSSCCCT--TCCCSSCC
T ss_pred CCCccCcc--hHHHhhHh
Confidence 46888887 78888885
Done!