BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024396
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 325 bits (832), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 161/302 (53%), Positives = 216/302 (71%), Gaps = 34/302 (11%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
MV+AS+S H TF+YARP+T +S PS +++ +EF+ +GVTIIEGE++EH+K+VS+LK+VD
Sbjct: 20 MVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVD 79
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
+VIS + +P Q+ I++AIK AGNIKRFLPS+FGCEED+++PLPPFE+ LEKKRI+RR
Sbjct: 80 IVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRR 139
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPF---ESHDDVVVYGSGEAKVVFNYEEDIAKCT 177
AIEAA +PYT+VSAN GAYFVN LL P +DD+V+YG+GE K V NYEEDIAK T
Sbjct: 140 AIEAAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYT 199
Query: 178 IK------------------------------EQKIGQSFKRIQVSEEELVKLSHTLPPP 207
IK E K G SFK++ + +E+LV+LS LP P
Sbjct: 200 IKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMPDEQLVRLSQELPQP 259
Query: 208 EDIPISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFLID-PPKPARTA 266
++IP+SI+HS+ KGD M++E+ +DDIEAS LYP+ +FT+ID LLD+F+ P P
Sbjct: 260 QNIPVSILHSIFVKGDLMSYEMRKDDIEASNLYPELEFTSIDGLLDLFISGRAPPPTLAE 319
Query: 267 FE 268
FE
Sbjct: 320 FE 321
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 300 bits (768), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 151/297 (50%), Positives = 200/297 (67%), Gaps = 35/297 (11%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
MVK S+ GH T+V+ RP NS SK + EFQ +G I++GELDEH+K+V ++K+VD
Sbjct: 23 MVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVD 77
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
VVIS +A+PQ LDQ +I+ AIKVAGNIKRFLPS+FG EED++ LPPFEA +E+KR++RR
Sbjct: 78 VVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRR 137
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPFESHDDVVVYGSGEAKVVFNYEEDIAKCTIKE 180
AIE A IPYT+VSAN +YF+N LLRP++ D++ VYG+GEAK NYE+DI TIK
Sbjct: 138 AIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKV 197
Query: 181 QKIGQSFKRI------------------------------QVSEEELVKLSHTLPPPEDI 210
++ R+ V EEE+V L+ LP PE+I
Sbjct: 198 ATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKELPEPENI 257
Query: 211 PISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFLIDPPKPARTAF 267
PI+I+H L G +M+++ E+D+EAS LYP+ KFTTID+LLDIF+ DPP PA AF
Sbjct: 258 PIAILHCLFIDGATMSYDFKENDVEASTLYPELKFTTIDELLDIFVHDPPPPASAAF 314
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 300 bits (767), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 151/297 (50%), Positives = 200/297 (67%), Gaps = 35/297 (11%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
MVK S+ GH T+V+ RP NS SK + EFQ +G I++GELDEH+K+V ++K+VD
Sbjct: 27 MVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVD 81
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
VVIS +A+PQ LDQ +I+ AIKVAGNIKRFLPS+FG EED++ LPPFEA +E+KR++RR
Sbjct: 82 VVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRR 141
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPFESHDDVVVYGSGEAKVVFNYEEDIAKCTIKE 180
AIE A IPYT+VSAN +YF+N LLRP++ D++ VYG+GEAK NYE+DI TIK
Sbjct: 142 AIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKV 201
Query: 181 QKIGQSFKRI------------------------------QVSEEELVKLSHTLPPPEDI 210
++ R+ V EEE+V L+ LP PE+I
Sbjct: 202 ATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKELPEPENI 261
Query: 211 PISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFLIDPPKPARTAF 267
PI+I+H L G +M+++ E+D+EAS LYP+ KFTTID+LLDIF+ DPP PA AF
Sbjct: 262 PIAILHCLFIDGATMSYDFKENDVEASTLYPELKFTTIDELLDIFVHDPPPPASAAF 318
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 300 bits (767), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 151/297 (50%), Positives = 200/297 (67%), Gaps = 35/297 (11%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
MVK S+ GH T+V+ RP NS SK + EFQ +G I++GELDEH+K+V ++K+VD
Sbjct: 27 MVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVD 81
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
VVIS +A PQ+LDQ +I+ AIKVAGNIKRFLPS+FG EED++ LPPFEA +E+KR++RR
Sbjct: 82 VVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRR 141
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPFESHDDVVVYGSGEAKVVFNYEEDIAKCTIKE 180
AIE A IPYT+VSAN +YF+N LLRP++ D++ VYG+GEAK NYE+DI TIK
Sbjct: 142 AIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKV 201
Query: 181 QKIGQSFKRI------------------------------QVSEEELVKLSHTLPPPEDI 210
++ R+ V EEE+V L+ LP PE+I
Sbjct: 202 ATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKELPEPENI 261
Query: 211 PISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFLIDPPKPARTAF 267
PI+I+H L G +M+++ E+D+EAS LYP+ KFTTID+LLDIF+ DPP PA AF
Sbjct: 262 PIAILHCLFIDGATMSYDFKENDVEASTLYPELKFTTIDELLDIFVHDPPPPASAAF 318
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 298 bits (763), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/297 (50%), Positives = 200/297 (67%), Gaps = 35/297 (11%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
MVK S+ GH T+V+ RP NS SK + EFQ +G I++GELDEH+K+V ++K+VD
Sbjct: 27 MVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVD 81
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
VVIS +A+PQ LDQ +I+ AIKVAGNIKRFLPS+FG EED++ LPPFEA +E++R++RR
Sbjct: 82 VVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERQRMIRR 141
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPFESHDDVVVYGSGEAKVVFNYEEDIAKCTIKE 180
AIE A IPYT+VSAN +YF+N LLRP++ D++ VYG+GEAK NYE+DI TIK
Sbjct: 142 AIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKV 201
Query: 181 QKIGQSFKRI------------------------------QVSEEELVKLSHTLPPPEDI 210
++ R+ V EEE+V L+ LP PE+I
Sbjct: 202 ATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKELPEPENI 261
Query: 211 PISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFLIDPPKPARTAF 267
PI+I+H L G +M+++ E+D+EAS LYP+ KFTTID+LLDIF+ DPP PA AF
Sbjct: 262 PIAILHCLFIDGATMSYDFKENDVEASTLYPELKFTTIDELLDIFVHDPPPPASAAF 318
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 160/289 (55%), Gaps = 33/289 (11%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
+ KAS+ GH TF+ R T +S K ++ + F+ G I+ G +D+H +V +K VD
Sbjct: 20 VAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVD 79
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
VVISTV Q Q+ I+ AIK G +KRF PSEFG + D V + P ++ E K VRR
Sbjct: 80 VVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRR 139
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPFES---HDDVVVYGSGEAKVVFNYEEDIAKCT 177
AIEA IPYT+VS+N YF+ L + + D VV+ G G A+VVF EEDI T
Sbjct: 140 AIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFT 199
Query: 178 IK------------------------------EQKIGQSFKRIQVSEEELVKLSHTLPPP 207
IK E+KI ++ ++ V EEE++KL P P
Sbjct: 200 IKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFP 259
Query: 208 EDIPISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFL 256
+I I+I HS+ KGD NFE+G +EAS+LYPD K+TT+D+ L F+
Sbjct: 260 ANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 308
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 163 bits (413), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 158/296 (53%), Gaps = 42/296 (14%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
+V AS+S GH T+V RP S K+++ F+ +G +IE LD+H+++V LK+VD
Sbjct: 20 IVNASISLGHPTYVLFRPEVV-SNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 78
Query: 61 VVISTVA----YPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKV-RPLPPFEAYLEKK 115
VVIS +A L+QL++V AIK AGNIKRFLPSEFG + D + L P K
Sbjct: 79 VVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSITFIDK 138
Query: 116 RIVRRAIEAAQIPYTFVSANLCGAYFVNVLLRPFESH-----DDVVVYGSGEAKVVFNYE 170
R VRRAIEAA IPYT+VS+N+ YF L + + H D V++YG G K ++ E
Sbjct: 139 RKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQ-LDGHMMPPRDKVLIYGDGNVKGIWVDE 197
Query: 171 EDIAKCTIK------------------------------EQKIGQSFKRIQVSEEELVKL 200
+D+ TIK E+ Q+ +I +S ++ +
Sbjct: 198 DDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLAD 257
Query: 201 SHTLPPPEDIPISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFL 256
E I ++ + +GD NFE+G + IEA+KLYP+ K+ T+D L+ ++
Sbjct: 258 MKDKSYEEKIVRCHLYQIFFRGDLYNFEIGPNAIEATKLYPEVKYVTMDSYLERYV 313
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 154/291 (52%), Gaps = 36/291 (12%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRP-SKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEV 59
+V AS+ +G+ T+ R + P +K E+ +Q +GV ++EG++++H+ +V +K+V
Sbjct: 18 IVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQV 77
Query: 60 DVVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVR 119
D+VI DQ++I+ AIK AGN+K+F PSEFG + D+ + P E+K +R
Sbjct: 78 DIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHDAVEPVRQVFEEKASIR 137
Query: 120 RAIEAAQIPYTFVSANLCGAYFVNVLLRPFES---HDDVVVYGSGEAKVVFNYEEDIAKC 176
R IEA +PYT++ + YF+ L + + D VV+ G G K + E D+
Sbjct: 138 RVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGDGNVKGAYVTEADVGTF 197
Query: 177 TIK------------------------------EQKIGQSFKRIQVSEEELVKLSHTLPP 206
TI+ E+KIG++ ++ VSEE+++K
Sbjct: 198 TIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQVLKDIQESSF 257
Query: 207 PEDIPISIMHSLLAKGDSMNFELG-EDDIEASKLYPDFKFTTIDQLLDIFL 256
P + +++ HS KGD++ +E+ DIEAS+ YPD +TT D+ L+ F+
Sbjct: 258 PHNYLLALYHSQQIKGDAV-YEIDPAKDIEASEAYPDVTYTTADEYLNQFV 307
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 148/293 (50%), Gaps = 38/293 (12%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKE-- 58
+ AS+ + T++ ARP ++ PSK +I K + G I+ G ++E + + ILKE
Sbjct: 26 VATASLDAHRPTYILARPGPRS--PSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHE 83
Query: 59 VDVVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIV 118
+D+V+STV LDQ+ +V A+K G IKRFLPSEFG + ++ P+ P +KR V
Sbjct: 84 IDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRADPVEPGLNMYREKRRV 143
Query: 119 RRAIEAAQIPYTFVSANLCGAYFVNVLLRPFE---SHDDVVVYGSGEAKVVFNYEEDIAK 175
R+ +E + IP+T++ N ++ + P E D +YG G K F DI K
Sbjct: 144 RQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGK 203
Query: 176 CTIK------------------------------EQKIGQSFKRIQVSEEELVKLSHTLP 205
T+K E+KIG++ R+ V+E++L+ +
Sbjct: 204 FTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENI 263
Query: 206 PPEDIPISIMHSLLAKGDSMNFEL-GEDDIEASKLYPDFKFTTIDQLLDIFLI 257
P+ + + H + KG +NF + G +D+E + LYP+ F T+++ +++
Sbjct: 264 IPQSVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPEDSFRTVEECFGEYIV 316
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 76 EIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRRAIEAAQIPYTFVSAN 135
+V A + AG +K + + E+ + PL E AI IPYTF+
Sbjct: 89 NVVKAARDAG-VKHIAYTGYAFAEESIIPLAHVHLATE------YAIRTTNIPYTFLRNA 141
Query: 136 LCGAYFVNVLLRP-FESHDDVVVYGSGEAKVVFNYEEDIAKCTI 178
L +FVN LR ES V GSG V E +A T+
Sbjct: 142 LYTDFFVNEGLRASTESGAIVTNAGSGIVNSVTRNELALAAATV 185
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 76 EIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRRAIEAAQIPYTFVSAN 135
+V A + AG +K + + E+ + PL E AI IPYTF+
Sbjct: 89 NVVKAARDAG-VKHIAYTGYAFAEESIIPLAHVHLATE------YAIRTTNIPYTFLRNA 141
Query: 136 LCGAYFVNVLLRP-FESHDDVVVYGSGEAKVVFNYEEDIAKCTI 178
L +FVN LR ES V GSG V E +A T+
Sbjct: 142 LYTDFFVNEGLRASTESGAIVTNAGSGIVNSVTRNELALAAATV 185
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 76 EIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRRAIEAAQIPYTFVSAN 135
+V A + AG +K + + E+ + PL E AI IPYTF+
Sbjct: 89 NVVKAARDAG-VKHIAYTGYAFAEESIIPLAHVHLATE------YAIRTTNIPYTFLRNA 141
Query: 136 LCGAYFVNVLLRP-FESHDDVVVYGSGEAKVVFNYEEDIAKCTI 178
L +FVN LR ES V GSG V E +A T+
Sbjct: 142 LYTDFFVNEGLRASTESGAIVTNAGSGIVNSVTRNELALAAATV 185
>pdb|1TQI|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase
pdb|1TQM|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Amppnp
pdb|1ZAO|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Atp And Manganese Ions
pdb|1ZAR|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Adp And Manganese Ions
Length = 282
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 99 EDKVRPLPPFEAYLEKKRIVR-RAIEAAQIPYTFVSANLCGAYFVNVLLRPFESHDDVVV 157
E+K R + YL R+V+ R + +TF+ +L Y ++ L+R + +
Sbjct: 44 EEKARNILK---YLSDLRVVQNRQKDYEGSTFTFIGLSL---YSLHRLVRSGKVDAIGKL 97
Query: 158 YGSGEAKVVFN-YEEDIAKCTIKEQKIGQ-SFKRIQ 191
G G+ VFN Y E +C +K K+G SFK+++
Sbjct: 98 MGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVK 133
>pdb|1TQP|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Atp
Length = 282
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 99 EDKVRPLPPFEAYLEKKRIVR-RAIEAAQIPYTFVSANLCGAYFVNVLLRPFESHDDVVV 157
E+K R + YL R+V+ R + +TF+ +L Y ++ L+R + +
Sbjct: 44 EEKARNILK---YLSDLRVVQNRQKDYEGSTFTFIGLSL---YSLHRLVRSGKVDAIGKL 97
Query: 158 YGSGEAKVVFN-YEEDIAKCTIKEQKIGQ-SFKRIQ 191
G G+ VFN Y E +C +K K+G SFK+++
Sbjct: 98 XGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVK 133
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 76 EIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRRAIEAAQIPYTFVSAN 135
+V A + AG +K + + E+ + PL E A IPYTF+
Sbjct: 89 NVVKAARDAG-VKHIAYTGYAFAEESIIPLAHVHLATE------YATRTTNIPYTFLRNA 141
Query: 136 LCGAYFVNVLLRP-FESHDDVVVYGSGEAKVVFNYEEDIAKCTI 178
L +FVN LR ES V GSG V E +A T+
Sbjct: 142 LYTDFFVNEGLRASTESGAIVTNAGSGIVNSVTRNELALAAATV 185
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 211 PISIMHSLLAKGDSMNFELGEDDIEA-SKLY 240
P ++M+ GD NF+L +DDI+ KLY
Sbjct: 135 PNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 165
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 211 PISIMHSLLAKGDSMNFELGEDDIEA-SKLY 240
P ++M+ GD NF+L +DDI+ KLY
Sbjct: 134 PNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 164
>pdb|2CLY|B Chain B, Subcomplex Of The Stator Of Bovine Mitochondrial Atp
Synthase
pdb|2CLY|E Chain E, Subcomplex Of The Stator Of Bovine Mitochondrial Atp
Synthase
Length = 160
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 127 IPYTFVSANLCGAYFVNVLLRPFESHDDVVVYGSGEAKVVFNYEEDIAKCTIKEQKIGQS 186
I + + AN+ A V+ + F + + A+V +ED+ C + + QS
Sbjct: 51 IDWAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCA---EFLTQS 107
Query: 187 FKRIQVSEEELVKLSHTLP 205
RIQ E+EL K+ + +P
Sbjct: 108 KTRIQEYEKELEKMRNIIP 126
>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMP|B Chain B, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMQ|A Chain A, Matrilysin Complexed With Hydroxamate Inhibitor
pdb|1MMR|A Chain A, Matrilysin Complexed With Sulfodiimine Inhibitor
Length = 170
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 211 PISIMHSLLAKGDSMNFELGEDDIEA-SKLY 240
P ++M+ GD NF+L +DDI+ KLY
Sbjct: 134 PNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 164
>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 165
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 211 PISIMHSLLAKGDSMNFELGEDDIEA-SKLY 240
P ++M+ GD NF+L +DDI+ KLY
Sbjct: 135 PNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,788,053
Number of Sequences: 62578
Number of extensions: 314264
Number of successful extensions: 858
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 28
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)