Query 024397
Match_columns 268
No_of_seqs 155 out of 657
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1666 V-SNARE [Intracellular 100.0 4.8E-40 1E-44 276.9 25.9 217 7-237 1-220 (220)
2 KOG3251 Golgi SNAP receptor co 99.6 4.3E-13 9.4E-18 114.3 24.0 203 7-237 1-212 (213)
3 KOG3202 SNARE protein TLG1/Syn 99.6 2.9E-12 6.4E-17 112.0 25.2 202 6-220 4-218 (235)
4 PF03908 Sec20: Sec20; InterP 99.5 2.3E-12 5.1E-17 97.6 13.1 88 149-236 4-91 (92)
5 PF12352 V-SNARE_C: Snare regi 99.3 2.3E-11 5E-16 86.4 9.7 65 147-211 2-66 (66)
6 PF05008 V-SNARE: Vesicle tran 99.1 3.1E-09 6.8E-14 78.0 11.6 75 18-97 1-75 (79)
7 KOG3208 SNARE protein GS28 [In 98.9 8.1E-07 1.8E-11 76.2 22.3 199 6-223 2-219 (231)
8 KOG0810 SNARE protein Syntaxin 98.7 1.7E-05 3.7E-10 72.2 24.6 82 152-233 205-289 (297)
9 KOG0812 SNARE protein SED5/Syn 98.6 4E-05 8.6E-10 68.4 23.6 74 152-225 226-299 (311)
10 COG5074 t-SNARE complex subuni 98.5 4.1E-05 8.9E-10 66.4 21.0 86 152-238 184-273 (280)
11 KOG3385 V-SNARE [Intracellular 98.2 1.2E-05 2.6E-10 62.4 8.7 76 149-225 32-107 (118)
12 KOG0811 SNARE protein PEP12/VA 98.1 0.0031 6.6E-08 56.7 24.5 91 147-237 174-267 (269)
13 smart00397 t_SNARE Helical reg 98.1 3.9E-05 8.4E-10 53.4 8.7 61 146-206 5-65 (66)
14 PF05739 SNARE: SNARE domain; 97.9 0.00016 3.5E-09 50.3 10.0 60 151-210 2-61 (63)
15 KOG0809 SNARE protein TLG2/Syn 97.9 0.0096 2.1E-07 53.6 22.6 74 144-217 209-282 (305)
16 PF09753 Use1: Membrane fusion 97.7 0.015 3.3E-07 51.8 21.0 81 138-223 155-235 (251)
17 PF00957 Synaptobrevin: Synapt 97.6 0.0029 6.3E-08 47.2 12.1 82 153-234 3-85 (89)
18 COG5325 t-SNARE complex subuni 97.5 0.052 1.1E-06 48.6 21.5 74 148-221 190-264 (283)
19 cd00193 t_SNARE Soluble NSF (N 97.5 0.0013 2.8E-08 44.8 8.4 57 150-206 3-59 (60)
20 KOG3065 SNAP-25 (synaptosome-a 97.4 0.0011 2.4E-08 59.6 9.7 72 138-209 64-135 (273)
21 KOG0860 Synaptobrevin/VAMP-lik 97.0 0.022 4.7E-07 44.6 11.9 61 151-211 27-87 (116)
22 KOG3894 SNARE protein Syntaxin 96.3 0.61 1.3E-05 42.6 17.5 88 136-223 211-302 (316)
23 PF09177 Syntaxin-6_N: Syntaxi 96.3 0.083 1.8E-06 40.1 10.4 79 11-90 3-88 (97)
24 KOG3065 SNAP-25 (synaptosome-a 96.1 0.027 5.9E-07 50.8 8.1 66 142-207 207-272 (273)
25 PRK10884 SH3 domain-containing 96.1 0.23 4.9E-06 43.1 13.5 64 169-236 130-194 (206)
26 KOG2678 Predicted membrane pro 94.7 0.81 1.8E-05 39.9 12.1 84 156-239 158-242 (244)
27 KOG1666 V-SNARE [Intracellular 94.0 3.8 8.2E-05 35.6 18.3 28 144-171 119-146 (220)
28 PF05478 Prominin: Prominin; 93.8 9.8 0.00021 39.7 22.4 45 45-94 241-285 (806)
29 KOG0860 Synaptobrevin/VAMP-lik 93.7 2.7 5.8E-05 33.0 11.9 51 173-229 59-109 (116)
30 PF04210 MtrG: Tetrahydrometha 93.0 1 2.2E-05 32.0 7.9 41 183-223 14-55 (70)
31 PF00957 Synaptobrevin: Synapt 92.9 2.9 6.2E-05 30.9 12.3 55 173-233 33-87 (89)
32 PF06008 Laminin_I: Laminin Do 92.4 7.7 0.00017 34.6 18.1 69 138-206 184-252 (264)
33 TIGR01149 mtrG N5-methyltetrah 92.2 1.6 3.5E-05 30.9 8.0 39 185-223 16-55 (70)
34 KOG3202 SNARE protein TLG1/Syn 92.2 2.7 5.9E-05 37.2 11.4 85 136-225 142-226 (235)
35 PRK01026 tetrahydromethanopter 91.5 2.1 4.5E-05 31.1 8.1 40 184-223 18-58 (77)
36 KOG0810 SNARE protein Syntaxin 91.0 12 0.00027 34.2 16.8 58 46-103 85-147 (297)
37 PF12911 OppC_N: N-terminal TM 90.4 0.36 7.9E-06 32.4 3.3 37 203-239 4-40 (56)
38 KOG0859 Synaptobrevin/VAMP-lik 90.0 1.1 2.4E-05 38.4 6.5 60 152-211 124-183 (217)
39 PF12273 RCR: Chitin synthesis 89.7 0.22 4.9E-06 39.8 2.0 23 215-237 1-23 (130)
40 COG4064 MtrG Tetrahydromethano 89.4 3.8 8.3E-05 29.1 7.7 37 180-222 21-57 (75)
41 PF10779 XhlA: Haemolysin XhlA 88.9 6.6 0.00014 27.9 9.4 11 213-223 49-59 (71)
42 PHA03049 IMV membrane protein; 87.0 1.1 2.3E-05 31.5 3.7 13 227-239 13-25 (68)
43 KOG0811 SNARE protein PEP12/VA 86.7 24 0.00052 31.9 18.6 84 148-231 182-265 (269)
44 PF05961 Chordopox_A13L: Chord 86.5 1.3 2.9E-05 31.2 4.0 12 228-239 14-25 (68)
45 PF09753 Use1: Membrane fusion 85.3 17 0.00037 32.2 11.7 28 183-210 190-217 (251)
46 KOG0862 Synaptobrevin/VAMP-lik 85.3 14 0.0003 32.2 10.5 69 152-220 133-201 (216)
47 PF02468 PsbN: Photosystem II 84.1 1.6 3.4E-05 28.2 3.2 31 217-247 7-37 (43)
48 PF09889 DUF2116: Uncharacteri 83.7 3.2 6.9E-05 28.7 4.8 25 202-226 26-50 (59)
49 PHA02681 ORF089 virion membran 79.5 2.8 6.1E-05 30.8 3.5 13 227-239 14-26 (92)
50 PF01102 Glycophorin_A: Glycop 79.4 1.8 3.9E-05 34.4 2.7 11 226-236 78-88 (122)
51 PRK13183 psbN photosystem II r 78.4 2.1 4.7E-05 27.9 2.3 29 219-247 12-40 (46)
52 PF07423 DUF1510: Protein of u 78.1 3.1 6.7E-05 36.4 4.1 29 210-238 9-37 (217)
53 TIGR03510 XapX XapX domain. Th 78.1 3.3 7.1E-05 27.5 3.2 21 226-254 8-28 (49)
54 COG5074 t-SNARE complex subuni 77.9 50 0.0011 29.3 16.1 52 147-201 193-244 (280)
55 PRK07021 fliL flagellar basal 77.8 4.2 9.1E-05 33.7 4.6 26 215-240 17-43 (162)
56 TIGR00606 rad50 rad50. This fa 77.4 1.2E+02 0.0026 33.5 21.6 71 138-208 576-652 (1311)
57 CHL00020 psbN photosystem II p 77.3 2 4.3E-05 27.7 1.9 29 219-247 9-37 (43)
58 PF00523 Fusion_gly: Fusion gl 76.9 1.7 3.7E-05 42.5 2.3 35 183-217 440-474 (490)
59 PF05478 Prominin: Prominin; 76.9 47 0.001 34.7 13.0 14 209-222 407-420 (806)
60 PF01519 DUF16: Protein of unk 76.6 16 0.00034 28.1 7.0 38 174-211 60-97 (102)
61 PF05531 NPV_P10: Nucleopolyhe 75.4 20 0.00044 26.0 6.9 61 138-198 3-66 (75)
62 PHA03386 P10 fibrous body prot 75.1 13 0.00028 28.0 6.0 53 141-197 7-59 (94)
63 PF10717 ODV-E18: Occlusion-de 74.7 7.2 0.00016 28.8 4.5 6 241-246 49-54 (85)
64 PRK07718 fliL flagellar basal 74.6 5 0.00011 32.6 4.2 27 213-239 2-29 (142)
65 PF14362 DUF4407: Domain of un 74.4 67 0.0015 29.1 20.2 11 230-240 278-288 (301)
66 PRK11677 hypothetical protein; 73.2 3.7 7.9E-05 33.2 3.0 25 216-240 3-27 (134)
67 PF12777 MT: Microtubule-bindi 73.1 55 0.0012 30.4 11.3 74 137-210 219-292 (344)
68 PF06682 DUF1183: Protein of u 73.1 4.5 9.8E-05 37.4 3.9 16 223-238 162-177 (318)
69 PF12495 Vip3A_N: Vegetative i 72.9 25 0.00054 28.0 7.5 86 136-221 42-127 (177)
70 PF06024 DUF912: Nucleopolyhed 72.8 2.6 5.6E-05 32.3 2.0 22 216-237 64-85 (101)
71 PHA03049 IMV membrane protein; 72.4 4.6 9.9E-05 28.4 2.9 24 216-239 5-29 (68)
72 PF03908 Sec20: Sec20; InterP 68.8 45 0.00098 24.7 12.3 54 144-197 13-66 (92)
73 PF15050 SCIMP: SCIMP protein 68.5 13 0.00027 29.5 4.9 21 245-265 63-83 (133)
74 KOG0994 Extracellular matrix g 67.9 1.9E+02 0.0042 31.7 17.2 30 41-70 1582-1611(1758)
75 COG4575 ElaB Uncharacterized c 67.1 56 0.0012 25.2 11.2 86 147-232 13-100 (104)
76 PF00558 Vpu: Vpu protein; In 65.8 6.9 0.00015 28.8 2.8 21 216-236 5-25 (81)
77 PF11395 DUF2873: Protein of u 65.4 11 0.00023 23.5 3.2 16 219-234 13-28 (43)
78 PF07106 TBPIP: Tat binding pr 65.0 78 0.0017 26.1 10.5 58 7-64 77-137 (169)
79 PF02009 Rifin_STEVOR: Rifin/s 64.8 4.1 8.9E-05 37.4 1.8 22 7-28 48-69 (299)
80 KOG0161 Myosin class II heavy 64.7 2.7E+02 0.0059 32.2 18.3 64 143-206 1854-1917(1930)
81 PTZ00046 rifin; Provisional 64.6 6.4 0.00014 36.9 3.1 25 216-240 317-341 (358)
82 KOG3838 Mannose lectin ERGIC-5 64.4 1.3E+02 0.0029 28.8 11.5 57 150-209 388-445 (497)
83 PF01102 Glycophorin_A: Glycop 64.3 8.8 0.00019 30.5 3.4 26 223-248 78-103 (122)
84 PF07889 DUF1664: Protein of u 64.1 73 0.0016 25.4 9.1 44 153-196 68-111 (126)
85 PF05283 MGC-24: Multi-glycosy 64.0 6.9 0.00015 33.4 2.9 23 216-238 161-185 (186)
86 PF03904 DUF334: Domain of unk 63.7 1E+02 0.0023 27.1 11.8 43 164-209 110-152 (230)
87 PF09125 COX2-transmemb: Cytoc 63.5 33 0.00072 21.3 5.2 24 201-229 6-29 (38)
88 PRK10132 hypothetical protein; 63.3 68 0.0015 24.8 12.9 82 152-233 22-104 (108)
89 TIGR01477 RIFIN variant surfac 63.3 7.1 0.00015 36.5 3.1 26 215-240 311-336 (353)
90 PRK08455 fliL flagellar basal 63.2 7.7 0.00017 32.9 3.1 16 224-239 29-44 (182)
91 PHA02650 hypothetical protein; 63.0 13 0.00028 27.1 3.7 11 230-240 66-76 (81)
92 PF11694 DUF3290: Protein of u 61.2 12 0.00026 30.7 3.8 39 207-245 8-47 (149)
93 COG5325 t-SNARE complex subuni 61.0 1.3E+02 0.0028 27.3 11.5 45 178-225 227-271 (283)
94 PHA02902 putative IMV membrane 60.8 12 0.00025 26.3 3.1 9 230-238 17-25 (70)
95 PF05957 DUF883: Bacterial pro 60.7 66 0.0014 23.8 13.1 73 150-222 6-80 (94)
96 KOG4684 Uncharacterized conser 59.6 12 0.00026 32.6 3.6 29 202-230 196-224 (275)
97 TIGR02588 conserved hypothetic 59.5 15 0.00032 29.2 3.9 24 218-241 8-31 (122)
98 PRK10404 hypothetical protein; 59.1 79 0.0017 24.2 12.7 82 152-233 15-98 (101)
99 PHA02844 putative transmembran 58.9 15 0.00032 26.5 3.4 10 230-239 65-74 (75)
100 PF05546 She9_MDM33: She9 / Md 58.4 1.2E+02 0.0027 26.2 16.0 50 7-56 3-52 (207)
101 PF12669 P12: Virus attachment 57.2 6.4 0.00014 27.0 1.3 16 224-239 7-23 (58)
102 PF05568 ASFV_J13L: African sw 57.0 11 0.00025 30.8 2.9 6 230-235 47-52 (189)
103 cd01324 cbb3_Oxidase_CcoQ Cyto 55.7 9.8 0.00021 25.1 1.9 13 222-234 20-32 (48)
104 PF08114 PMP1_2: ATPase proteo 55.4 13 0.00027 23.7 2.3 20 219-238 15-35 (43)
105 PF06363 Picorna_P3A: Picornav 55.2 52 0.0011 24.8 5.9 43 201-243 55-98 (100)
106 KOG4603 TBP-1 interacting prot 54.9 70 0.0015 27.0 7.2 58 44-104 87-144 (201)
107 KOG4674 Uncharacterized conser 54.8 3.9E+02 0.0084 30.8 19.2 70 142-211 394-463 (1822)
108 TIGR01478 STEVOR variant surfa 54.8 14 0.0003 33.6 3.4 12 225-236 273-284 (295)
109 PF12526 DUF3729: Protein of u 54.7 6.3 0.00014 30.9 1.1 9 254-262 103-111 (113)
110 PHA03164 hypothetical protein; 54.5 18 0.00038 26.3 3.2 15 220-234 66-80 (88)
111 PF13131 DUF3951: Protein of u 53.9 25 0.00054 23.5 3.6 23 229-251 19-42 (53)
112 PF09403 FadA: Adhesion protei 53.7 1.1E+02 0.0025 24.3 11.6 24 7-30 25-48 (126)
113 PTZ00370 STEVOR; Provisional 53.6 14 0.0003 33.6 3.2 11 226-236 270-280 (296)
114 PF04639 Baculo_E56: Baculovir 53.3 8.3 0.00018 35.0 1.7 23 216-238 280-302 (305)
115 TIGR03054 photo_alph_chp1 puta 53.2 22 0.00048 28.8 4.0 26 241-266 25-50 (135)
116 PHA02975 hypothetical protein; 52.5 35 0.00076 24.2 4.4 7 230-236 61-67 (69)
117 PF08058 NPCC: Nuclear pore co 52.0 22 0.00047 29.0 3.9 42 217-262 82-123 (144)
118 PHA03030 hypothetical protein; 51.5 11 0.00025 28.8 2.0 8 232-239 19-26 (122)
119 PF11119 DUF2633: Protein of u 50.7 17 0.00037 25.1 2.5 29 215-243 11-40 (59)
120 PF11337 DUF3139: Protein of u 50.5 21 0.00045 26.2 3.3 12 215-226 5-16 (85)
121 PF06008 Laminin_I: Laminin Do 49.3 1.9E+02 0.0041 25.6 17.5 188 7-204 50-243 (264)
122 PF10883 DUF2681: Protein of u 49.2 24 0.00053 26.3 3.4 19 220-238 9-27 (87)
123 PRK12785 fliL flagellar basal 48.8 6.9 0.00015 32.6 0.5 10 230-239 40-49 (166)
124 KOG0977 Nuclear envelope prote 48.7 2.9E+02 0.0063 27.6 13.1 25 147-171 297-321 (546)
125 PF06103 DUF948: Bacterial pro 48.6 1E+02 0.0023 22.4 10.0 54 145-201 25-78 (90)
126 cd07596 BAR_SNX The Bin/Amphip 48.3 1.6E+02 0.0035 24.5 9.8 27 41-67 143-169 (218)
127 PF05545 FixQ: Cbb3-type cytoc 47.7 14 0.0003 24.2 1.7 13 229-242 23-35 (49)
128 PF12273 RCR: Chitin synthesis 47.5 37 0.0008 26.9 4.5 20 217-236 6-25 (130)
129 PRK11637 AmiB activator; Provi 47.5 2.6E+02 0.0056 26.7 23.0 24 45-68 77-100 (428)
130 PRK14750 kdpF potassium-transp 47.4 36 0.00078 19.9 3.1 17 223-239 10-26 (29)
131 KOG3287 Membrane trafficking p 47.3 1.2E+02 0.0026 26.6 7.8 34 182-215 154-187 (236)
132 PF14937 DUF4500: Domain of un 47.3 19 0.00042 26.7 2.5 32 211-242 33-64 (86)
133 KOG4025 Putative apoptosis rel 47.1 1.7E+02 0.0038 24.6 9.1 88 10-102 87-176 (207)
134 PF12606 RELT: Tumour necrosis 46.9 23 0.00051 23.6 2.7 12 227-238 14-25 (50)
135 TIGR01294 P_lamban phospholamb 46.9 64 0.0014 21.0 4.6 8 194-201 9-16 (52)
136 PF07235 DUF1427: Protein of u 46.8 11 0.00024 28.1 1.2 20 227-254 10-29 (90)
137 TIGR01195 oadG_fam sodium pump 46.8 45 0.00098 24.4 4.5 7 232-238 31-37 (82)
138 COG3105 Uncharacterized protei 46.7 26 0.00056 28.1 3.4 25 216-240 8-32 (138)
139 PF12352 V-SNARE_C: Snare regi 46.5 92 0.002 21.2 9.5 61 141-201 3-63 (66)
140 PHA03099 epidermal growth fact 46.5 24 0.00052 28.3 3.1 27 220-246 109-135 (139)
141 PF06143 Baculo_11_kDa: Baculo 46.3 70 0.0015 23.7 5.4 16 192-207 21-36 (84)
142 PRK05696 fliL flagellar basal 46.0 20 0.00044 29.8 2.9 11 229-239 34-44 (170)
143 PF11346 DUF3149: Protein of u 45.9 28 0.00061 22.3 2.8 19 221-239 18-36 (42)
144 PRK02224 chromosome segregatio 45.7 3.8E+02 0.0082 28.0 20.8 30 40-69 276-305 (880)
145 PLN03160 uncharacterized prote 45.5 13 0.00029 32.4 1.8 29 213-241 36-66 (219)
146 PHA02819 hypothetical protein; 45.2 33 0.00073 24.5 3.4 8 230-237 63-70 (71)
147 PF06657 Cep57_MT_bd: Centroso 44.9 99 0.0021 22.5 6.0 53 5-64 13-68 (79)
148 PHA03097 C-type lectin-like pr 44.8 45 0.00097 27.4 4.7 17 236-252 33-49 (157)
149 PHA03395 p10 fibrous body prot 44.7 97 0.0021 23.1 5.9 51 147-197 12-65 (87)
150 PF15106 TMEM156: TMEM156 prot 44.5 24 0.00052 30.6 3.1 16 223-238 184-199 (226)
151 PF10032 Pho88: Phosphate tran 44.4 29 0.00063 29.8 3.6 33 219-251 37-69 (192)
152 PHA03011 hypothetical protein; 44.4 31 0.00067 26.4 3.3 13 227-239 13-25 (120)
153 COG1722 XseB Exonuclease VII s 44.4 1.1E+02 0.0023 22.5 6.1 54 10-63 11-65 (81)
154 KOG0994 Extracellular matrix g 44.3 4.8E+02 0.01 28.9 19.8 17 9-25 1511-1527(1758)
155 PF06092 DUF943: Enterobacteri 43.9 21 0.00046 29.6 2.6 17 223-239 12-28 (157)
156 PF11857 DUF3377: Domain of un 43.6 27 0.00058 25.2 2.7 9 257-265 61-69 (74)
157 PF05335 DUF745: Protein of un 43.6 2.1E+02 0.0045 24.5 11.2 62 148-209 111-172 (188)
158 PF08372 PRT_C: Plant phosphor 43.5 75 0.0016 26.3 5.8 17 169-185 71-87 (156)
159 PF14283 DUF4366: Domain of un 43.4 6.9 0.00015 34.2 -0.3 11 230-240 176-186 (218)
160 COG2443 Sss1 Preprotein transl 43.4 1E+02 0.0023 21.7 5.6 49 186-235 4-56 (65)
161 PF06103 DUF948: Bacterial pro 42.9 1.3E+02 0.0028 21.9 8.9 54 145-198 32-85 (90)
162 KOG1693 emp24/gp25L/p24 family 42.7 1.8E+02 0.0039 25.2 8.1 20 221-240 184-203 (209)
163 PF06459 RR_TM4-6: Ryanodine R 42.2 1.2E+02 0.0026 27.5 7.4 37 201-239 160-196 (274)
164 PF15018 InaF-motif: TRP-inter 42.1 40 0.00088 21.1 3.0 22 217-238 11-32 (38)
165 PF10151 DUF2359: Uncharacteri 42.1 3.5E+02 0.0075 26.6 11.0 47 193-239 241-288 (469)
166 PF12128 DUF3584: Protein of u 41.8 5.1E+02 0.011 28.5 18.7 63 152-214 489-551 (1201)
167 PF08802 CytB6-F_Fe-S: Cytochr 41.7 74 0.0016 20.1 4.2 33 206-239 5-37 (39)
168 PF06295 DUF1043: Protein of u 41.2 26 0.00057 27.8 2.7 20 222-241 5-24 (128)
169 PF08651 DASH_Duo1: DASH compl 41.0 1.3E+02 0.0027 21.9 6.1 36 176-211 3-38 (78)
170 PF05454 DAG1: Dystroglycan (D 40.9 9 0.0002 35.0 0.0 12 224-235 160-171 (290)
171 PF07423 DUF1510: Protein of u 40.4 35 0.00075 29.9 3.5 33 209-241 5-37 (217)
172 PRK15058 cytochrome b562; Prov 40.2 1.4E+02 0.003 23.9 6.7 23 8-30 77-99 (128)
173 KOG0996 Structural maintenance 39.8 5.5E+02 0.012 28.3 20.1 62 7-70 364-432 (1293)
174 PF07361 Cytochrom_B562: Cytoc 39.7 1.6E+02 0.0034 22.4 6.8 16 10-25 54-69 (103)
175 COG4575 ElaB Uncharacterized c 39.6 1.8E+02 0.0038 22.5 7.1 24 11-34 10-33 (104)
176 PF04799 Fzo_mitofusin: fzo-li 39.5 2.2E+02 0.0047 24.0 8.0 15 81-95 149-163 (171)
177 PF09325 Vps5: Vps5 C terminal 39.4 2.4E+02 0.0052 24.0 10.0 28 42-69 162-189 (236)
178 PF04906 Tweety: Tweety; Inte 39.2 3E+02 0.0064 26.3 10.0 53 148-203 285-337 (406)
179 PF07438 DUF1514: Protein of u 39.2 25 0.00055 24.6 2.0 14 219-232 2-15 (66)
180 TIGR03061 pip_yhgE_Nterm YhgE/ 38.8 57 0.0012 26.6 4.5 10 209-218 4-13 (164)
181 PF12729 4HB_MCP_1: Four helix 38.8 1.9E+02 0.0041 22.6 12.4 26 38-63 74-99 (181)
182 PF04999 FtsL: Cell division p 38.2 65 0.0014 23.9 4.4 20 215-234 14-33 (97)
183 PF09777 OSTMP1: Osteopetrosis 38.1 56 0.0012 28.9 4.6 29 226-254 202-232 (237)
184 PHA02844 putative transmembran 37.9 75 0.0016 22.9 4.3 23 216-238 48-70 (75)
185 PF06013 WXG100: Proteins of 1 37.6 1.3E+02 0.0029 20.6 7.5 61 6-66 11-74 (86)
186 PRK05529 cell division protein 37.5 34 0.00074 30.5 3.2 34 204-237 24-57 (255)
187 KOG4796 RNA polymerase II elon 37.4 1.4E+02 0.0031 29.7 7.4 42 57-105 555-596 (604)
188 PF02009 Rifin_STEVOR: Rifin/s 37.2 30 0.00065 31.8 2.7 16 223-238 265-280 (299)
189 PF11714 Inhibitor_I53: Thromb 36.2 68 0.0015 22.9 3.8 12 246-257 59-70 (78)
190 COG0497 RecN ATPase involved i 35.9 1.6E+02 0.0034 29.5 7.7 98 1-103 254-352 (557)
191 PF12998 ING: Inhibitor of gro 35.9 1.8E+02 0.0039 21.5 7.9 51 9-59 22-77 (105)
192 COG4317 Uncharacterized protei 35.8 52 0.0011 24.3 3.2 8 247-254 23-30 (93)
193 PRK14740 kdbF potassium-transp 35.6 84 0.0018 18.4 3.4 25 216-240 3-27 (29)
194 PF12768 Rax2: Cortical protei 35.4 49 0.0011 30.0 3.9 20 222-241 240-259 (281)
195 KOG1094 Discoidin domain recep 35.0 34 0.00073 34.6 2.9 21 217-237 396-416 (807)
196 PF13396 PLDc_N: Phospholipase 34.9 35 0.00076 21.6 2.1 23 217-239 23-45 (46)
197 PRK14762 membrane protein; Pro 34.8 51 0.0011 18.7 2.4 8 215-222 2-9 (27)
198 PRK14748 kdpF potassium-transp 34.2 68 0.0015 18.8 2.9 16 224-239 11-26 (29)
199 PF08172 CASP_C: CASP C termin 34.0 74 0.0016 28.4 4.7 40 197-236 198-240 (248)
200 PF05781 MRVI1: MRVI1 protein; 34.0 1.5E+02 0.0032 29.5 7.0 20 39-58 251-270 (538)
201 PF14030 DUF4245: Protein of u 33.7 62 0.0013 27.0 3.9 11 238-248 29-39 (169)
202 PRK14758 hypothetical protein; 33.6 77 0.0017 18.1 3.0 13 218-230 9-21 (27)
203 PRK10132 hypothetical protein; 33.5 2.3E+02 0.0049 21.9 7.3 51 9-60 12-62 (108)
204 PF12877 DUF3827: Domain of un 33.3 21 0.00045 36.0 1.2 27 213-239 267-296 (684)
205 KOG4552 Vitamin-D-receptor int 33.1 1.2E+02 0.0026 26.4 5.6 50 9-60 50-105 (272)
206 PF09889 DUF2116: Uncharacteri 33.0 1E+02 0.0022 21.2 4.2 16 215-230 36-51 (59)
207 PRK14775 lipoprotein signal pe 32.9 51 0.0011 27.6 3.3 30 224-255 136-165 (170)
208 PRK04863 mukB cell division pr 32.9 7.8E+02 0.017 28.0 21.8 55 16-70 861-931 (1486)
209 PF05934 MCLC: Mid-1-related c 32.6 1.5E+02 0.0031 29.4 6.6 27 241-267 362-388 (549)
210 PF02706 Wzz: Chain length det 32.5 15 0.00032 29.0 0.0 35 204-239 5-39 (152)
211 PRK10404 hypothetical protein; 32.3 2.3E+02 0.0049 21.6 7.5 51 12-63 8-58 (101)
212 KOG0996 Structural maintenance 32.2 7.3E+02 0.016 27.4 17.8 66 149-214 538-613 (1293)
213 PF09451 ATG27: Autophagy-rela 31.9 54 0.0012 29.4 3.6 24 216-239 202-226 (268)
214 PRK15374 pathogenicity island 31.9 5.4E+02 0.012 25.8 21.3 55 153-209 254-316 (593)
215 PF02411 MerT: MerT mercuric t 31.3 64 0.0014 25.3 3.4 30 225-254 58-87 (116)
216 PF06679 DUF1180: Protein of u 31.1 52 0.0011 27.5 3.0 20 219-238 99-118 (163)
217 PF07303 Occludin_ELL: Occludi 30.9 1.4E+02 0.003 22.7 5.2 29 74-103 72-100 (101)
218 PF11712 Vma12: Endoplasmic re 30.8 55 0.0012 26.3 3.1 27 213-239 110-137 (142)
219 PF13800 Sigma_reg_N: Sigma fa 30.7 73 0.0016 23.6 3.6 7 204-210 5-11 (96)
220 PF10814 DUF2562: Protein of u 30.6 2.8E+02 0.0061 22.2 7.8 34 216-253 92-125 (133)
221 PF06387 Calcyon: D1 dopamine 30.5 43 0.00094 28.2 2.4 34 205-239 76-109 (186)
222 PRK13831 conjugal transfer pro 30.5 72 0.0016 30.8 4.2 9 227-235 36-44 (432)
223 PF11166 DUF2951: Protein of u 30.3 2.4E+02 0.0053 21.4 12.3 22 216-237 75-96 (98)
224 TIGR02797 exbB tonB-system ene 30.3 58 0.0013 28.1 3.3 23 215-237 14-36 (211)
225 PF13800 Sigma_reg_N: Sigma fa 30.2 88 0.0019 23.2 3.9 6 206-211 3-8 (96)
226 COG4064 MtrG Tetrahydromethano 30.2 2.1E+02 0.0045 20.5 7.9 7 154-160 23-29 (75)
227 COG5346 Predicted membrane pro 30.1 2.9E+02 0.0062 22.1 8.2 23 188-210 70-92 (136)
228 PF11446 DUF2897: Protein of u 30.0 42 0.0009 22.8 1.9 11 219-229 6-16 (55)
229 PF10157 DUF2365: Uncharacteri 30.0 2.3E+02 0.0049 23.3 6.5 46 45-96 101-146 (149)
230 TIGR01069 mutS2 MutS2 family p 30.0 5.5E+02 0.012 26.9 10.8 22 189-210 695-716 (771)
231 PRK11281 hypothetical protein; 29.9 7.8E+02 0.017 27.1 18.2 44 167-210 285-328 (1113)
232 PF09604 Potass_KdpF: F subuni 29.9 75 0.0016 18.0 2.6 16 224-239 7-22 (25)
233 KOG0250 DNA repair protein RAD 29.8 7.6E+02 0.016 26.9 21.5 31 189-220 444-474 (1074)
234 PRK10884 SH3 domain-containing 29.6 3.7E+02 0.008 23.2 14.9 96 134-232 88-186 (206)
235 TIGR00606 rad50 rad50. This fa 29.5 8.2E+02 0.018 27.2 21.9 13 9-21 799-811 (1311)
236 TIGR02169 SMC_prok_A chromosom 29.5 7.2E+02 0.016 26.5 22.1 16 182-197 477-492 (1164)
237 PF04272 Phospholamban: Phosph 29.4 1.2E+02 0.0027 19.7 3.8 7 194-200 9-15 (52)
238 COG0838 NuoA NADH:ubiquinone o 29.4 1.3E+02 0.0028 23.9 4.9 30 226-255 21-53 (123)
239 PF08581 Tup_N: Tup N-terminal 29.2 2.3E+02 0.005 20.6 7.8 18 8-25 3-20 (79)
240 TIGR01478 STEVOR variant surfa 28.9 46 0.00099 30.3 2.5 22 221-242 266-287 (295)
241 PRK09720 cybC cytochrome b562; 28.6 2.7E+02 0.0059 21.3 6.8 23 8-30 49-71 (100)
242 COG3088 CcmH Uncharacterized p 28.5 54 0.0012 27.0 2.6 25 216-240 106-130 (153)
243 PF10146 zf-C4H2: Zinc finger- 28.5 4.1E+02 0.0089 23.4 10.2 20 50-69 25-44 (230)
244 PHA02681 ORF089 virion membran 28.4 77 0.0017 23.4 3.1 24 213-236 4-27 (92)
245 KOG4603 TBP-1 interacting prot 28.4 3.7E+02 0.008 22.8 11.2 63 7-69 84-149 (201)
246 COG5415 Predicted integral mem 28.3 3.2E+02 0.0069 24.0 7.3 28 183-210 17-44 (251)
247 TIGR02866 CoxB cytochrome c ox 28.3 94 0.002 26.5 4.3 9 230-238 29-37 (201)
248 TIGR01477 RIFIN variant surfac 28.3 38 0.00083 31.8 1.9 14 6-19 70-83 (353)
249 PRK15406 oligopeptide ABC tran 28.0 1.2E+02 0.0025 27.7 5.1 35 205-239 27-61 (302)
250 TIGR02115 potass_kdpF K+-trans 27.9 58 0.0012 18.7 1.9 17 224-240 6-22 (26)
251 TIGR02209 ftsL_broad cell divi 27.9 85 0.0018 22.4 3.4 15 219-233 7-21 (85)
252 PF15468 DUF4636: Domain of un 27.8 98 0.0021 27.1 4.2 16 210-225 36-51 (243)
253 PRK03814 oxaloacetate decarbox 27.7 1.4E+02 0.0031 22.0 4.6 7 232-238 35-41 (85)
254 PHA02902 putative IMV membrane 27.7 98 0.0021 21.7 3.4 23 216-238 6-28 (70)
255 TIGR01006 polys_exp_MPA1 polys 27.7 1E+02 0.0022 26.5 4.4 29 207-236 13-41 (226)
256 PF10389 CoatB: Bacteriophage 27.6 86 0.0019 20.5 2.9 17 223-239 28-44 (46)
257 PF01299 Lamp: Lysosome-associ 27.6 51 0.0011 30.0 2.7 12 228-239 286-297 (306)
258 PTZ00046 rifin; Provisional 27.5 41 0.00088 31.7 2.0 15 6-20 67-81 (358)
259 PF10669 Phage_Gp23: Protein g 27.4 87 0.0019 23.9 3.3 21 215-235 15-35 (121)
260 PTZ00370 STEVOR; Provisional 27.4 51 0.0011 30.1 2.5 21 222-242 263-283 (296)
261 PRK15111 antimicrobial peptide 27.4 1E+02 0.0022 27.9 4.6 35 205-239 17-51 (296)
262 PF15361 RIC3: Resistance to i 27.3 48 0.001 27.3 2.2 16 223-238 88-103 (152)
263 PRK10780 periplasmic chaperone 26.9 3.5E+02 0.0076 22.1 10.7 28 7-34 48-75 (165)
264 PF09788 Tmemb_55A: Transmembr 26.8 39 0.00084 30.2 1.6 26 203-228 185-210 (256)
265 PRK10414 biopolymer transport 26.8 71 0.0015 28.4 3.3 23 215-237 24-46 (244)
266 PF00672 HAMP: HAMP domain; I 26.6 85 0.0018 21.1 3.1 10 230-239 17-26 (70)
267 PF06683 DUF1184: Protein of u 26.6 1E+02 0.0022 26.0 3.9 50 191-245 54-103 (191)
268 PF12575 DUF3753: Protein of u 26.5 98 0.0021 22.2 3.3 8 230-237 62-69 (72)
269 PRK05886 yajC preprotein trans 26.5 44 0.00095 26.0 1.7 10 230-239 15-24 (109)
270 PRK00523 hypothetical protein; 26.4 55 0.0012 23.5 2.1 9 230-238 23-31 (72)
271 PF03938 OmpH: Outer membrane 26.1 3.4E+02 0.0073 21.6 11.0 61 7-67 41-104 (158)
272 PTZ00382 Variant-specific surf 26.1 20 0.00043 27.1 -0.3 16 224-239 78-93 (96)
273 COG4499 Predicted membrane pro 25.9 1.1E+02 0.0023 29.3 4.4 25 214-238 220-245 (434)
274 PF15168 TRIQK: Triple QxxK/R 25.9 1.1E+02 0.0024 22.2 3.5 22 217-238 54-75 (79)
275 PRK02224 chromosome segregatio 25.8 7.8E+02 0.017 25.7 21.5 35 171-205 650-684 (880)
276 PF04111 APG6: Autophagy prote 25.7 4.4E+02 0.0096 24.2 8.5 9 240-248 271-279 (314)
277 PF09972 DUF2207: Predicted me 25.7 2.6E+02 0.0057 26.6 7.3 17 245-262 266-282 (511)
278 COG5353 Uncharacterized protei 25.6 84 0.0018 25.9 3.2 10 230-239 24-33 (161)
279 COG4736 CcoQ Cbb3-type cytochr 25.6 96 0.0021 21.5 3.1 7 237-243 30-36 (60)
280 KOG0809 SNARE protein TLG2/Syn 25.4 5.4E+02 0.012 23.7 16.4 49 182-234 254-302 (305)
281 PF07851 TMPIT: TMPIT-like pro 25.3 3.2E+02 0.0069 25.5 7.4 27 38-64 63-89 (330)
282 PRK10801 colicin uptake protei 25.2 80 0.0017 27.7 3.3 23 215-237 15-37 (227)
283 PF10694 DUF2500: Protein of u 25.2 24 0.00051 27.2 0.0 8 228-235 14-21 (110)
284 PRK11637 AmiB activator; Provi 25.2 6E+02 0.013 24.2 21.7 27 43-69 82-108 (428)
285 COG3763 Uncharacterized protei 25.0 74 0.0016 22.7 2.5 9 230-238 22-30 (71)
286 PRK01844 hypothetical protein; 24.9 60 0.0013 23.3 2.0 9 230-238 22-30 (72)
287 PF06072 Herpes_US9: Alphaherp 24.8 1.6E+02 0.0034 20.4 3.9 13 199-211 10-22 (60)
288 PRK04863 mukB cell division pr 24.7 1.1E+03 0.023 26.9 17.2 28 44-71 1021-1048(1486)
289 PRK14068 exodeoxyribonuclease 24.7 2.6E+02 0.0056 20.2 5.3 51 10-60 7-58 (76)
290 PF01034 Syndecan: Syndecan do 24.7 25 0.00054 24.7 0.0 11 228-238 28-38 (64)
291 PF07926 TPR_MLP1_2: TPR/MLP1/ 24.6 3.5E+02 0.0076 21.3 10.5 25 8-32 16-40 (132)
292 PF10812 DUF2561: Protein of u 24.6 60 0.0013 28.0 2.3 14 216-229 64-77 (207)
293 PHA02650 hypothetical protein; 24.5 98 0.0021 22.6 3.0 12 228-239 61-72 (81)
294 PRK01026 tetrahydromethanopter 24.5 2.8E+02 0.0061 20.2 8.6 18 180-197 21-38 (77)
295 PF06825 HSBP1: Heat shock fac 24.4 2.3E+02 0.0049 19.2 4.6 18 17-34 7-24 (54)
296 TIGR02796 tolQ TolQ protein. T 24.2 86 0.0019 27.1 3.3 22 215-236 14-35 (215)
297 PF11460 DUF3007: Protein of u 24.2 1.6E+02 0.0035 22.7 4.4 26 6-31 63-89 (104)
298 PF07889 DUF1664: Protein of u 24.2 3.7E+02 0.008 21.4 10.5 26 44-69 69-94 (126)
299 KOG0861 SNARE protein YKT6, sy 24.1 2.6E+02 0.0055 23.8 5.9 61 152-218 136-196 (198)
300 PF00435 Spectrin: Spectrin re 24.0 2.6E+02 0.0057 19.6 12.4 83 10-93 2-90 (105)
301 PF04478 Mid2: Mid2 like cell 24.0 17 0.00037 30.0 -1.1 16 224-239 62-77 (154)
302 PF10661 EssA: WXG100 protein 23.9 98 0.0021 25.2 3.4 8 110-117 70-77 (145)
303 PF03918 CcmH: Cytochrome C bi 23.9 26 0.00056 28.7 0.0 42 216-259 102-143 (148)
304 PHA02642 C-type lectin-like pr 23.8 80 0.0017 27.6 3.0 14 225-238 62-75 (216)
305 PRK06231 F0F1 ATP synthase sub 23.8 1.1E+02 0.0024 26.3 3.9 8 212-219 45-52 (205)
306 PRK14066 exodeoxyribonuclease 23.8 2.7E+02 0.0059 20.0 5.3 49 11-59 6-55 (75)
307 PF11172 DUF2959: Protein of u 23.7 4.8E+02 0.01 22.6 11.2 43 55-103 94-136 (201)
308 PRK14067 exodeoxyribonuclease 23.6 2.9E+02 0.0063 20.1 5.5 51 10-60 8-59 (80)
309 PF13268 DUF4059: Protein of u 23.6 94 0.002 22.3 2.8 17 228-244 24-40 (72)
310 PF12354 Internalin_N: Bacteri 23.5 34 0.00075 23.4 0.5 8 248-255 34-41 (57)
311 COG3116 FtsL Cell division pro 23.2 1E+02 0.0022 23.8 3.0 21 213-233 20-40 (105)
312 PRK09458 pspB phage shock prot 23.2 1.2E+02 0.0025 22.0 3.2 9 232-240 19-27 (75)
313 PF15444 TMEM247: Transmembran 23.2 86 0.0019 26.7 2.9 17 213-229 170-186 (218)
314 PF12210 Hrs_helical: Hepatocy 23.1 3.4E+02 0.0074 20.6 6.1 22 10-31 3-24 (96)
315 PF14914 LRRC37AB_C: LRRC37A/B 23.1 2.1E+02 0.0046 23.5 5.0 16 208-223 113-128 (154)
316 PRK10913 dipeptide transporter 22.9 1.9E+02 0.0041 26.2 5.5 18 205-222 20-37 (300)
317 COG4420 Predicted membrane pro 22.8 2.7E+02 0.0059 23.8 5.9 53 165-220 12-64 (191)
318 PRK14759 potassium-transportin 22.7 1.8E+02 0.0038 17.1 3.4 18 223-240 10-27 (29)
319 PRK10772 cell division protein 22.7 2.1E+02 0.0045 22.2 4.8 22 214-235 23-44 (108)
320 PF11657 Activator-TraM: Trans 22.6 4.3E+02 0.0093 21.6 14.3 6 204-209 111-116 (144)
321 PF15206 FAM209: FAM209 family 22.5 59 0.0013 26.4 1.8 22 227-248 47-69 (150)
322 PHA00739 V3 structural protein 22.3 82 0.0018 23.3 2.3 15 215-229 6-20 (92)
323 KOG0933 Structural maintenance 21.7 1.1E+03 0.023 25.8 17.5 190 8-198 271-465 (1174)
324 TIGR02736 cbb3_Q_epsi cytochro 21.7 1.1E+02 0.0024 20.8 2.7 8 224-231 9-16 (56)
325 PF13253 DUF4044: Protein of u 21.6 1.5E+02 0.0032 18.2 3.0 15 215-229 11-25 (35)
326 PF02158 Neuregulin: Neureguli 21.5 26 0.00056 33.2 -0.5 23 223-245 19-42 (404)
327 PF14899 DUF4492: Domain of un 21.5 1.3E+02 0.0029 21.1 3.1 24 217-240 20-43 (64)
328 PRK11638 lipopolysaccharide bi 21.4 1.6E+02 0.0034 27.6 4.7 35 204-239 12-46 (342)
329 PF14712 Snapin_Pallidin: Snap 21.3 3.3E+02 0.0071 19.7 9.3 60 148-207 30-90 (92)
330 KOG3564 GTPase-activating prot 21.0 8E+02 0.017 24.4 9.2 53 45-102 51-103 (604)
331 PF11031 Phage_holin_T: Bacter 20.9 1.1E+02 0.0024 26.5 3.2 34 202-235 14-48 (216)
332 PF05957 DUF883: Bacterial pro 20.7 3.5E+02 0.0076 19.8 6.8 18 14-31 3-20 (94)
333 PRK15082 glutathione ABC trans 20.6 2.7E+02 0.0058 25.3 6.0 15 206-220 27-41 (301)
334 PF15450 DUF4631: Domain of un 20.4 6.7E+02 0.015 25.0 8.7 11 19-29 357-367 (531)
335 TIGR03545 conserved hypothetic 20.4 8.8E+02 0.019 24.3 10.7 25 10-34 165-189 (555)
336 PRK00888 ftsB cell division pr 20.3 1.2E+02 0.0026 23.2 3.1 7 233-239 17-23 (105)
337 PF12958 DUF3847: Protein of u 20.3 3.7E+02 0.008 19.9 6.6 48 176-223 3-53 (86)
338 PRK15471 chain length determin 20.3 1.8E+02 0.0039 27.0 4.7 29 211-240 27-55 (325)
339 PF03302 VSP: Giardia variant- 20.1 53 0.0012 31.3 1.3 17 221-237 376-392 (397)
340 COG4068 Uncharacterized protei 20.0 2.8E+02 0.0061 19.2 4.4 11 201-211 30-40 (64)
No 1
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-40 Score=276.88 Aligned_cols=217 Identities=16% Similarity=0.273 Sum_probs=189.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHH
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQ 86 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r 86 (268)
||+.|+.||++|+.+.++|+++|+++.+++ +++|+..+.+++..++||+++|++||.|++++ |+.+|..|..|++
T Consensus 1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~~-~~ekk~~l~~i~~~leEa~ell~qMdlEvr~l----p~~~Rs~~~~KlR 75 (220)
T KOG1666|consen 1 MSSLFEGYEQQYRELSAEITKKIGRALSLP-GSEKKQLLSEIDSKLEEANELLDQMDLEVREL----PPNFRSSYLSKLR 75 (220)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHhcCC-chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC----CchhhhHHHHHHH
Confidence 899999999999999999999999999965 89999999999999999999999999999997 5688999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh--ccchhhhccCCCCCCCCCcchhhhhhccccHHHHHHhchhhhHHHHHHHHHHHHHHHH
Q 024397 87 SMIKELNSYVALRKTYMNSL--GNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQ 164 (268)
Q Consensus 87 ~~~~~l~~~~~l~k~~~~~~--~~~R~~L~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~~~~~~~e 164 (268)
.|+++|+.++.-.+...+.. ..+|+++++...+.+ .....|||++++.+++.+.+++++|.++++++.|
T Consensus 76 ~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~add---------~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~E 146 (220)
T KOG1666|consen 76 EYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEADD---------QNISADQRARLLQNTERLERSTDRLKDSQRIALE 146 (220)
T ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHhhhhccc---------cccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHH
Confidence 99999998655444443111 225778876554321 1234689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH-HHHHHhhc
Q 024397 165 TIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVI-AIIVVKVV 237 (268)
Q Consensus 165 te~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI-~~i~~k~~ 237 (268)
||+||.+|+++|+.|||+|.+.++.+.+++++|++|+++|+.|.||+.+|||++.+||++++++| +++|+||+
T Consensus 147 TEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf~ 220 (220)
T KOG1666|consen 147 TEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKFT 220 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998888777666 55666663
No 2
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.3e-13 Score=114.33 Aligned_cols=203 Identities=16% Similarity=0.217 Sum_probs=139.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHH
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQ 86 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r 86 (268)
|+.+|.+-.. .+.+++..+.++++.....+-.+.+..++..++.+.+.+..|+.-+...| |..+. .++++
T Consensus 1 m~~ly~~t~~----~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~ep----p~~rq--~~rlr 70 (213)
T KOG3251|consen 1 MDALYQSTNR----QLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEP----PKSRQ--AARLR 70 (213)
T ss_pred CchHHHHHHH----HHHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCC----CCcHH--HHHHH
Confidence 4555555444 44555788888887543356677899999999999999999998777654 33331 22333
Q ss_pred HHHHHHHHHHHHHHHHHhh---------hccchhhhccCCCCCCCCCcchhhhhhccccHHHHHHhchhhhHHHHHHHHH
Q 024397 87 SMIKELNSYVALRKTYMNS---------LGNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKR 157 (268)
Q Consensus 87 ~~~~~l~~~~~l~k~~~~~---------~~~~R~~L~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~ 157 (268)
..+.+..+..++..++.. .+.+|++|+++..+.+ +.+.+.+ +|. .-+-.+.|.+
T Consensus 71 -~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~-~~~~~~~-----~D~----------el~~~d~l~~ 133 (213)
T KOG3251|consen 71 -VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNG-ATGTSIP-----FDE----------ELQENDSLKR 133 (213)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCC-CccCCCc-----chH----------HHHhhhHHHH
Confidence 333222233333333211 1124778887654321 0000110 111 1245788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 024397 158 SQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVV 237 (268)
Q Consensus 158 ~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI~~i~~k~~ 237 (268)
+++.+++.-..|.+|+++|.+|+-.|.++++++.++-.+|+.|+.+|+.|.||...||+|+|+.++++ +|++|.+|+|.
T Consensus 134 s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~-~v~~yl~~~wl 212 (213)
T KOG3251|consen 134 SHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILT-LVIMYLFYRWL 212 (213)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998865444 45566666664
No 3
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.9e-12 Score=111.99 Aligned_cols=202 Identities=15% Similarity=0.223 Sum_probs=133.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhhccC-C-c---hHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccCChhh--
Q 024397 6 QMSPQLEQIHGEIRDNFRALSNGFQKLDKIK-D-S---NRQTKQLE-ELTGRMRECKRLIKEMDREIKDEEARNPPEV-- 77 (268)
Q Consensus 6 ~~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~-~-~---~~r~~~i~-~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~-- 77 (268)
.+++-|.-|+ +...+...+...+++|..+. + + ++....++ .++..++..+.++.-++ +.|.++
T Consensus 4 ~~Dp~~~v~~-e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~--------~~~~~~~i 74 (235)
T KOG3202|consen 4 SEDPFFRVKN-ETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILE--------RNPSKFGI 74 (235)
T ss_pred CCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHH--------hCcccccC
Confidence 3556666666 77888888888888876542 1 1 22222233 33333333333322222 133344
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcc--chhhhccCCCCCCCCCcchhhhhhcccc-HHHHHHhchhhhHHHH
Q 024397 78 -NKQLNDEKQSMIKELNSYVALRKTYMN-SLGN--KKVELFDMGAGVSEPTADENVQVASSMS-NQELIDAGKKTMDETD 152 (268)
Q Consensus 78 -r~~~~~r~r~~~~~l~~~~~l~k~~~~-~~~~--~R~~L~~~~~~~~~~~~~~~~~~~~~~~-~r~~l~~~~~~l~~~~ 152 (268)
..++..|+.+..+.-.+..+++.++.. ..++ .|..|++....++ -+.......+.| .+...+...+.+++++
T Consensus 75 de~El~~R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~---~~~~~~~~~~~D~v~~~~~~qqqm~~eQD 151 (235)
T KOG3202|consen 75 DEFELSRRRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSPN---LDEAMSRASGLDNVQEIVQLQQQMLQEQD 151 (235)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCCCc---hhhhHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 356676665554443446666666654 2222 2788876544331 011222334566 4777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHH
Q 024397 153 QAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLF 220 (268)
Q Consensus 153 ~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~ 220 (268)
+.|+.++..+..+.++|..+.+||..|...|++....++.|++.|.+.++.+..|.+ +.+++=.+|+
T Consensus 152 e~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~~~~~~ 218 (235)
T KOG3202|consen 152 EGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQCSQWCA 218 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccchhH
Confidence 999999999999999999999999999999999999999999999999999999999 5454433333
No 4
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=99.45 E-value=2.3e-12 Score=97.63 Aligned_cols=88 Identities=23% Similarity=0.387 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 024397 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGV 228 (268)
Q Consensus 149 ~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~i 228 (268)
.+.+++|.++.+++.+..+.|..+++.|.+|+++|..++++.+++++.+..|+++|+.+.|+..+||+++++.+++++++
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~ 83 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLV 83 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 024397 229 IAIIVVKV 236 (268)
Q Consensus 229 I~~i~~k~ 236 (268)
|+||+|+-
T Consensus 84 v~yI~~rR 91 (92)
T PF03908_consen 84 VLYILWRR 91 (92)
T ss_pred HHHHhhhc
Confidence 99999874
No 5
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.30 E-value=2.3e-11 Score=86.39 Aligned_cols=65 Identities=28% Similarity=0.495 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHh
Q 024397 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (268)
Q Consensus 147 ~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~ 211 (268)
.+.++.++|.++.+++++|+++|.+|+++|..|+++|.+++++++++++++..|+++|+.|.||.
T Consensus 2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 46788999999999999999999999999999999999999999999999999999999999984
No 6
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=99.07 E-value=3.1e-09 Score=77.99 Aligned_cols=75 Identities=16% Similarity=0.362 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHHHHHHHHHH
Q 024397 18 IRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVA 97 (268)
Q Consensus 18 i~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r~~~~~l~~~~~ 97 (268)
|+.++.+|.+.++.+... .|++|+..++.++..+++|+++|++|+.|++++ |+..|..|..+++.|+.++..++.
T Consensus 1 f~~l~~~i~~~l~~~~~~-~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~----p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNL-SGEQRKSLIREIERDLDEAEELLKQMELEVRSL----PPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999885 569999999999999999999999999999987 568899999999999999887443
No 7
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=8.1e-07 Score=76.20 Aligned_cols=199 Identities=17% Similarity=0.203 Sum_probs=127.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhhccCCc-------------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024397 6 QMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDS-------------N---RQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (268)
Q Consensus 6 ~~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~-------------~---~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~ 69 (268)
++|+-++.+..+-..+=.++..++....++..+ . .-+..-.+++.-|++...+.++|.. +-..
T Consensus 2 ~~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s 80 (231)
T KOG3208|consen 2 GSSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASS 80 (231)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccC
Confidence 356667777777777777777776665554322 0 1122344566667777788888874 4444
Q ss_pred hccCChhhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhccCCCCCCCCCcchhhhhhccccHHHHHHhchh
Q 024397 70 EARNPPEVN---KQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKK 146 (268)
Q Consensus 70 ~~~~~~~~r---~~~~~r~r~~~~~l~~~~~l~k~~~~~~~~~R~~L~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~ 146 (268)
|.. .+... ..+...++.|.++ |...+..+.... +|+.|++..-+..+.+.. ..+....+++
T Consensus 81 ~a~-~aa~~htL~RHrEILqdy~qe---f~rir~n~~a~~--e~~~Ll~s~~~~~~~~~~-----~~~~~~~e~~----- 144 (231)
T KOG3208|consen 81 PAN-SAAVMHTLQRHREILQDYTQE---FRRIRSNIDAKR--ERESLLESVRADISSYPS-----ASGFNRGEMY----- 144 (231)
T ss_pred CCC-cHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHHHHHHHhhhhccCCc-----cCCCchHHHH-----
Confidence 331 12222 1222233333333 333444443322 467776543322110100 1112233333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 024397 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFL 223 (268)
Q Consensus 147 ~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iil 223 (268)
-+-..+|+++.+.++++.+++.+|-+.|..|+..+.++..+|.++-..+=..+.+|.++.+|-..|-+|+..||.
T Consensus 145 --lkE~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis 219 (231)
T KOG3208|consen 145 --LKEHDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVIS 219 (231)
T ss_pred --HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999998888888876654
No 8
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.7e-05 Score=72.16 Aligned_cols=82 Identities=15% Similarity=0.288 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHH---HHHHHhhhchHHHHHHHHHHHHH
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVK---EIGRQVATDKCIMLFLFLIVCGV 228 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~---~m~rr~~~dK~il~~iili~i~i 228 (268)
.+.+.+.++.+.|..++-..+..-...|.|+|+++...|....+.+..+...++ ...|++.+.|||++++++|+++|
T Consensus 205 h~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v 284 (297)
T KOG0810|consen 205 HDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVV 284 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHH
Confidence 667889999999999999999999999999999999999999999999998888 88888888888877766555444
Q ss_pred HHHHH
Q 024397 229 IAIIV 233 (268)
Q Consensus 229 I~~i~ 233 (268)
+++++
T Consensus 285 ~v~~i 289 (297)
T KOG0810|consen 285 LVVVI 289 (297)
T ss_pred Hhhhh
Confidence 43333
No 9
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=4e-05 Score=68.36 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIV 225 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~ 225 (268)
-..+.+++..+.|..+|-.++..-...|.|.+.++++.|++++.++.-|...|.++--|+..|+|+|+=|+.|+
T Consensus 226 ~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ 299 (311)
T KOG0812|consen 226 AKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGIL 299 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 56678888899999999999999999999999999999999999999999999999999999999998554433
No 10
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.54 E-value=4.1e-05 Score=66.39 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHH----HHHHHHHHhhhchHHHHHHHHHHHH
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQ----LVKEIGRQVATDKCIMLFLFLIVCG 227 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~----~l~~m~rr~~~dK~il~~iili~i~ 227 (268)
...|.++++++.|.-++-..+.+....|.|.++.+++.+.+.+.++..+.. -+++ +|.+..+||++|+||+++++
T Consensus 184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~ 262 (280)
T COG5074 184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIII 262 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHH
Confidence 567889999999999999999999999999999999999999999887764 4555 77788889999988887777
Q ss_pred HHHHHHHhhcc
Q 024397 228 VIAIIVVKVVN 238 (268)
Q Consensus 228 iI~~i~~k~~~ 238 (268)
+|+++++|.+.
T Consensus 263 viv~vv~~v~~ 273 (280)
T COG5074 263 VIVVVVFKVVP 273 (280)
T ss_pred HHHHHHhcccc
Confidence 77777776554
No 11
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=1.2e-05 Score=62.39 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 024397 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIV 225 (268)
Q Consensus 149 ~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~ 225 (268)
.+-++.++....-+.-.+.+...|..|...|+..|+++++++|.|.+-|+.+..-++.|+|+ ..-++.+|++++++
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~l 107 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSL 107 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHH
Confidence 45567777888888999999999999999999999999999999999999999999999999 44456666554444
No 12
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0031 Score=56.71 Aligned_cols=91 Identities=15% Similarity=0.291 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH---hhhchHHHHHHHH
Q 024397 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ---VATDKCIMLFLFL 223 (268)
Q Consensus 147 ~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr---~~~dK~il~~iil 223 (268)
.+++-.+.+..+++-+.+.++|-.+...-.++|.++++.|.+.|+.+..++..+...|++=.+. +..-+|++.+|++
T Consensus 174 ~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~ 253 (269)
T KOG0811|consen 174 LIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGG 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHH
Confidence 3455578888999999999999999999999999999999999999999999999988765543 3333344444444
Q ss_pred HHHHHHHHHHHhhc
Q 024397 224 IVCGVIAIIVVKVV 237 (268)
Q Consensus 224 i~i~iI~~i~~k~~ 237 (268)
++++||++++|...
T Consensus 254 ~v~lii~l~i~~~~ 267 (269)
T KOG0811|consen 254 PVGLIIGLIIAGIA 267 (269)
T ss_pred HHHHHHHHHHHHhh
Confidence 44455555555443
No 13
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.06 E-value=3.9e-05 Score=53.37 Aligned_cols=61 Identities=21% Similarity=0.362 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 024397 146 KTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (268)
Q Consensus 146 ~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~ 206 (268)
+.+++.++.|.+++..+.++.++|..+..++..|+++|+++.+.++.++..+..+.+.|+.
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999999999999999999999999999999987764
No 14
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=97.95 E-value=0.00016 Score=50.32 Aligned_cols=60 Identities=13% Similarity=0.248 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024397 151 TDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (268)
Q Consensus 151 ~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr 210 (268)
.++.|..+...+.+..+++..|..++..|.+.|+++.+.++.+...+..+.+.|..+.+.
T Consensus 2 ~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 2 RDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999999999999999999999988775
No 15
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0096 Score=53.62 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=60.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHH
Q 024397 144 GKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCI 217 (268)
Q Consensus 144 ~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~i 217 (268)
+.+...+=...+....+.+.+..+|-.+...-...|.-.+++++=.|+.|...+..|.+-|.+..+--..+|-+
T Consensus 209 ~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~ 282 (305)
T KOG0809|consen 209 NEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKM 282 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCce
Confidence 34444455666778888888888888888888999999999999999999999999999998877765555433
No 16
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.70 E-value=0.015 Score=51.80 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=59.0
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHH
Q 024397 138 QELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCI 217 (268)
Q Consensus 138 r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~i 217 (268)
...+......+++-.+ ++..++...++-......-|......|+++...++.--+.++.+..-|+.+.++... |+
T Consensus 155 e~~l~~~~~~QE~L~~---em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~ 229 (251)
T PF09753_consen 155 EKILQHHRNLQEDLTE---EMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CW 229 (251)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HH
Confidence 3444444444544444 445555566666777788889999999999999999999999999999998876433 66
Q ss_pred HHHHHH
Q 024397 218 MLFLFL 223 (268)
Q Consensus 218 l~~iil 223 (268)
+|++++
T Consensus 230 ~~~~i~ 235 (251)
T PF09753_consen 230 TWLMIF 235 (251)
T ss_pred HHHHHH
Confidence 665443
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.55 E-value=0.0029 Score=47.25 Aligned_cols=82 Identities=13% Similarity=0.258 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH-HH
Q 024397 153 QAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVI-AI 231 (268)
Q Consensus 153 ~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI-~~ 231 (268)
+.+......++++.++=.+-++.+-...+.|+.+.++-++....-..=.+.-+.+.|++...++-++++++++++++ ++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 45677788888888888888899999999999999988888888777777777777777666555554444333333 33
Q ss_pred HHH
Q 024397 232 IVV 234 (268)
Q Consensus 232 i~~ 234 (268)
|++
T Consensus 83 i~~ 85 (89)
T PF00957_consen 83 III 85 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 18
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.052 Score=48.55 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-hhhchHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ-VATDKCIMLFL 221 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr-~~~dK~il~~i 221 (268)
..+=++.+.++.+.+.|..+|-.+...=..+|.+++++++-.+..|..++..|.+-|...... -.+.||-+|++
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~L 264 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLL 264 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHH
Confidence 445578889999999999999999999999999999999999999999999999888765433 34666665543
No 19
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=97.46 E-value=0.0013 Score=44.75 Aligned_cols=57 Identities=18% Similarity=0.342 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 024397 150 ETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (268)
Q Consensus 150 ~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~ 206 (268)
+.++.|..+...+.+..+++..+..++..|.+.|+++.+.++.+...+..+.+-|++
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457789999999999999999999999999999999999999999999999987754
No 20
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0011 Score=59.61 Aligned_cols=72 Identities=26% Similarity=0.356 Sum_probs=64.4
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 138 QELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 138 r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
+.+-........++..+..++.+.+.+++..|..|+.+|..|+|+|.+|...++.++..+.++.+.|..+..
T Consensus 64 ~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 64 DELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344455556677888999999999999999999999999999999999999999999999999999998875
No 21
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.022 Score=44.62 Aligned_cols=61 Identities=8% Similarity=0.279 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHh
Q 024397 151 TDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (268)
Q Consensus 151 ~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~ 211 (268)
.++.+.++++.++++.+|=.+-.+..-+-.+.|..++++-+..++.-..=++.-.++.|++
T Consensus 27 ~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 27 ANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888888888887888888888888888888877766655444444444443
No 22
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.61 Score=42.63 Aligned_cols=88 Identities=11% Similarity=0.203 Sum_probs=69.2
Q ss_pred cHHHHHHhchhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHh
Q 024397 136 SNQELIDAGKKT----MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (268)
Q Consensus 136 ~~r~~l~~~~~~----l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~ 211 (268)
.+.|++..-++. ++...+....+++.+.|+..+-....+.+-.|-+.|+.+.+.+.++..+++.++..|+...++.
T Consensus 211 e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~ 290 (316)
T KOG3894|consen 211 EQVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNN 290 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhc
Confidence 344554433333 3445667778888999999999999999999999999999999999999999999999999987
Q ss_pred hhchHHHHHHHH
Q 024397 212 ATDKCIMLFLFL 223 (268)
Q Consensus 212 ~~dK~il~~iil 223 (268)
...+.++.+.++
T Consensus 291 ~~~r~~~lf~ll 302 (316)
T KOG3894|consen 291 GGLRVFLLFFLL 302 (316)
T ss_pred ccchhHHHHHHH
Confidence 666655444333
No 23
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=96.26 E-value=0.083 Score=40.07 Aligned_cols=79 Identities=11% Similarity=0.302 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhh---HHHHH
Q 024397 11 LEQIHGEIRDNFRALSNGFQKLDKIKDS----NRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVN---KQLND 83 (268)
Q Consensus 11 ~~~ye~ei~~~~~~l~~~~~~l~~~~~~----~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r---~~~~~ 83 (268)
|-..++|+...+..+++.+.+|..+..+ .+....-.++.+.+++++..|++|+..+..++. +|..|. .++..
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~-np~kF~l~~~Ei~~ 81 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEK-NPSKFNLSEEEISR 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHT-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccccCCCHHHHHH
Confidence 5567899999999999999999886543 244556788888899999999999999998875 566763 66776
Q ss_pred HHHHHHH
Q 024397 84 EKQSMIK 90 (268)
Q Consensus 84 r~r~~~~ 90 (268)
|+++...
T Consensus 82 Rr~fv~~ 88 (97)
T PF09177_consen 82 RRQFVSA 88 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 24
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.027 Score=50.75 Aligned_cols=66 Identities=15% Similarity=0.374 Sum_probs=58.8
Q ss_pred HhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 024397 142 DAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI 207 (268)
Q Consensus 142 ~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m 207 (268)
+.....-++.+..|+.+..++...+.+|.++..+|..|+++|+++.++++..+..+..+++-++.+
T Consensus 207 q~~~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL 272 (273)
T KOG3065|consen 207 QTEPAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL 272 (273)
T ss_pred ccCChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 334444567899999999999999999999999999999999999999999999999999877654
No 25
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.10 E-value=0.23 Score=43.10 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH-HHHHHhh
Q 024397 169 GTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVI-AIIVVKV 236 (268)
Q Consensus 169 G~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI-~~i~~k~ 236 (268)
......+|..+++.| ...+......+......+....+.. .-+|++++.+++++++| ++|+-.+
T Consensus 130 ~~~~~~~L~~~n~~L---~~~l~~~~~~~~~l~~~~~~~~~~~-~~~wf~~Gg~v~~~GlllGlilp~l 194 (206)
T PRK10884 130 SDSVINGLKEENQKL---KNQLIVAQKKVDAANLQLDDKQRTI-IMQWFMYGGGVAGIGLLLGLLLPHL 194 (206)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHchHHHHHHHHHHHHhccc
Confidence 334444455555544 4444455555555555555555554 33588887777776666 4444333
No 26
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=94.74 E-value=0.81 Score=39.88 Aligned_cols=84 Identities=12% Similarity=0.176 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHH-HHHHHHHHHHHHHH
Q 024397 156 KRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLF-LFLIVCGVIAIIVV 234 (268)
Q Consensus 156 ~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~-iili~i~iI~~i~~ 234 (268)
+.....+...++.+.+...-|..-++.+..+...+|.-...|.-...-+....+.-..+++.+.+ |++|+..|..+++.
T Consensus 158 esll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMilii 237 (244)
T KOG2678|consen 158 ESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILII 237 (244)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566667777778899999999999999998888988888888888776555332223 33344444477788
Q ss_pred hhccC
Q 024397 235 KVVNP 239 (268)
Q Consensus 235 k~~~~ 239 (268)
+||++
T Consensus 238 qifkk 242 (244)
T KOG2678|consen 238 QIFKK 242 (244)
T ss_pred HHhhc
Confidence 88864
No 27
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=3.8 Score=35.60 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=13.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 144 GKKTMDETDQAIKRSQMVVEQTIEVGTQ 171 (268)
Q Consensus 144 ~~~~l~~~~~~L~~~~~~~~ete~iG~~ 171 (268)
++..|=..+++|.++...+.+.-.|+.+
T Consensus 119 QR~rLl~nTerLeRst~rl~ds~Ria~E 146 (220)
T KOG1666|consen 119 QRARLLQNTERLERSTDRLKDSQRIALE 146 (220)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHH
Confidence 3344444455555555555555444444
No 28
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=93.80 E-value=9.8 Score=39.65 Aligned_cols=45 Identities=29% Similarity=0.508 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHHHHHHH
Q 024397 45 LEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNS 94 (268)
Q Consensus 45 i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r~~~~~l~~ 94 (268)
+.++.+.+.++++.+..+......+. ....+++..++..+.+++.
T Consensus 241 i~~l~~~~~~~~~~L~~v~~~~~~L~-----~~~~qL~~~L~~vK~~L~~ 285 (806)
T PF05478_consen 241 ILDLAQAMQETKELLQNVNSSLKDLQ-----EYQSQLRDGLRGVKRDLNN 285 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 33333367777777777776666552 2334455555555555554
No 29
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=2.7 Score=33.02 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=31.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024397 173 ATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVI 229 (268)
Q Consensus 173 l~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI 229 (268)
+++|..-.++|.........+. .++=+.|--+-..-+.|++++++|++++|
T Consensus 59 L~~L~drad~L~~~as~F~~~A------~klkrk~wWkn~Km~~il~~v~~i~l~ii 109 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTA------VKLKRKMWWKNCKMRIILGLVIIILLVVI 109 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888877777766544 44445566665555666666555554333
No 30
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=93.02 E-value=1 Score=31.96 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHhHHHHHHH-HHHHHHHHHhhhchHHHHHHHH
Q 024397 183 MGRIVNELDTIQFSIKKAS-QLVKEIGRQVATDKCIMLFLFL 223 (268)
Q Consensus 183 l~~~~~~v~~~~~~l~~a~-~~l~~m~rr~~~dK~il~~iil 223 (268)
..++.+++|+++..+..+. .+-.+++|++..|-=|++++++
T Consensus 14 ~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~ 55 (70)
T PF04210_consen 14 FNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVI 55 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHH
Confidence 3444455555555555444 3445778888888778887654
No 31
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=92.89 E-value=2.9 Score=30.87 Aligned_cols=55 Identities=15% Similarity=0.302 Sum_probs=33.3
Q ss_pred HHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 024397 173 ATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIV 233 (268)
Q Consensus 173 l~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI~~i~ 233 (268)
+++|..+.+.|......+.. .|+++=+.|-.+-+.-.+++++++++++++|++++
T Consensus 33 L~~L~~kt~~L~~~a~~F~k------~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~ 87 (89)
T PF00957_consen 33 LEELEDKTEELSDNAKQFKK------NAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence 45666666666665555544 44444555555666667777776666666665544
No 32
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.42 E-value=7.7 Score=34.63 Aligned_cols=69 Identities=7% Similarity=0.211 Sum_probs=46.0
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 024397 138 QELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (268)
Q Consensus 138 r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~ 206 (268)
+..+......+.+..+.|+++...+.+++.+-...-..|..=..+..++.+.-..+...|..|+.+|..
T Consensus 184 ~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 184 RDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566667777777777777777777776677766777777777777777776666655543
No 33
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=92.24 E-value=1.6 Score=30.93 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=22.8
Q ss_pred HHHHHHHhHhHHHHHHH-HHHHHHHHHhhhchHHHHHHHH
Q 024397 185 RIVNELDTIQFSIKKAS-QLVKEIGRQVATDKCIMLFLFL 223 (268)
Q Consensus 185 ~~~~~v~~~~~~l~~a~-~~l~~m~rr~~~dK~il~~iil 223 (268)
.+.+++|+++..+..+. .+-.+.+++..+|-=|++++++
T Consensus 16 ~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~vi 55 (70)
T TIGR01149 16 EVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVI 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHH
Confidence 34444444444444443 3445678888888778887554
No 34
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=2.7 Score=37.19 Aligned_cols=85 Identities=16% Similarity=0.275 Sum_probs=52.8
Q ss_pred cHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhch
Q 024397 136 SNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDK 215 (268)
Q Consensus 136 ~~r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK 215 (268)
-+++++..+.+.++.-..++.+...++....+-=..=..-|+..-.-++.++.+++.+...+....+ + ... ....
T Consensus 142 ~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~---~s~-~~~~ 216 (235)
T KOG3202|consen 142 LQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-M---ASQ-CSQW 216 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hcc-ccch
Confidence 4666777777777776666666665554433222222233567778899999999998888887776 3 332 2345
Q ss_pred HHHHHHHHHH
Q 024397 216 CIMLFLFLIV 225 (268)
Q Consensus 216 ~il~~iili~ 225 (268)
|++.+++.++
T Consensus 217 ~~il~l~~~~ 226 (235)
T KOG3202|consen 217 CAILLLVGLL 226 (235)
T ss_pred hHHHHHHHHH
Confidence 6666654433
No 35
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=91.52 E-value=2.1 Score=31.07 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=24.5
Q ss_pred HHHHHHHHhHhHHHHHHH-HHHHHHHHHhhhchHHHHHHHH
Q 024397 184 GRIVNELDTIQFSIKKAS-QLVKEIGRQVATDKCIMLFLFL 223 (268)
Q Consensus 184 ~~~~~~v~~~~~~l~~a~-~~l~~m~rr~~~dK~il~~iil 223 (268)
..+.+++|+++..+..+. .+-.+.+++...|-=|++++++
T Consensus 18 ~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~vi 58 (77)
T PRK01026 18 KEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVI 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHH
Confidence 344455555555555444 3445778888888778887554
No 36
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.05 E-value=12 Score=34.24 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccC----C-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 46 EELTGRMRECKRLIKEMDREIKDEEARN----P-PEVNKQLNDEKQSMIKELNSYVALRKTYM 103 (268)
Q Consensus 46 ~~~~~~l~ea~~ll~~me~Ei~~~~~~~----~-~~~r~~~~~r~r~~~~~l~~~~~l~k~~~ 103 (268)
..+...-..++..|+.++.+.-..+... . ...+..+..=.+.+...++.|......|.
T Consensus 85 ~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r 147 (297)
T KOG0810|consen 85 DEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYR 147 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555888887776665311 0 11123333333444444455555555554
No 37
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=90.43 E-value=0.36 Score=32.43 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhccC
Q 024397 203 LVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 203 ~l~~m~rr~~~dK~il~~iili~i~iI~~i~~k~~~~ 239 (268)
..+.+-|+..+||..+++++++++.+++.++.-++-|
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4567888889999988877666655555555556654
No 38
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.04 E-value=1.1 Score=38.43 Aligned_cols=60 Identities=7% Similarity=0.117 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHh
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~ 211 (268)
-+.|.+....+.|.+.+=.+-.+.+-.-.|.|+=.-|+.....++-..=++.-+.+.|.+
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~m 183 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKM 183 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHH
Confidence 556778888888888888888888888888887777777777777666667777777665
No 39
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=89.66 E-value=0.22 Score=39.77 Aligned_cols=23 Identities=0% Similarity=0.132 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 024397 215 KCIMLFLFLIVCGVIAIIVVKVV 237 (268)
Q Consensus 215 K~il~~iili~i~iI~~i~~k~~ 237 (268)
||++++||+++++|++++++.+-
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHH
Confidence 45556555444444444444333
No 40
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=89.43 E-value=3.8 Score=29.11 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 024397 180 TDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLF 222 (268)
Q Consensus 180 ~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~ii 222 (268)
.+.|+.+.++|+-+.+.+ -..+++++..|--|+++++
T Consensus 21 ~kRLdeieekvef~~~Ev------~Qr~GkkiGRDIGILYGlV 57 (75)
T COG4064 21 HKRLDEIEEKVEFVNGEV------YQRIGKKIGRDIGILYGLV 57 (75)
T ss_pred HHHHHHHHHHHHhhHHHH------HHHHHHHhcchHHHHHHHH
Confidence 344555555555555443 4567888888877887643
No 41
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=88.92 E-value=6.6 Score=27.91 Aligned_cols=11 Identities=18% Similarity=0.023 Sum_probs=5.9
Q ss_pred hchHHHHHHHH
Q 024397 213 TDKCIMLFLFL 223 (268)
Q Consensus 213 ~dK~il~~iil 223 (268)
..||+..+++-
T Consensus 49 n~kW~~r~iiG 59 (71)
T PF10779_consen 49 NTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHH
Confidence 34666665443
No 42
>PHA03049 IMV membrane protein; Provisional
Probab=86.97 E-value=1.1 Score=31.54 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=7.7
Q ss_pred HHHHHHHHhhccC
Q 024397 227 GVIAIIVVKVVNP 239 (268)
Q Consensus 227 ~iI~~i~~k~~~~ 239 (268)
+||++|+|.+..+
T Consensus 13 aIi~lIvYgiYnk 25 (68)
T PHA03049 13 VIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHhc
Confidence 4456666666655
No 43
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.72 E-value=24 Score=31.91 Aligned_cols=84 Identities=8% Similarity=0.037 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCG 227 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~ 227 (268)
+.+-...+.+.+.+..+...+=.+=.+-.+.=-+.+.++...|..-..+|.+|.++=+...+...--.|+++++++++++
T Consensus 182 I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v~lii~l 261 (269)
T KOG0811|consen 182 IEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPVGLIIGL 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHH
Confidence 33444444444444444433333333334444556677777777777777777777777777765555555555555544
Q ss_pred HHHH
Q 024397 228 VIAI 231 (268)
Q Consensus 228 iI~~ 231 (268)
+|+.
T Consensus 262 ~i~~ 265 (269)
T KOG0811|consen 262 IIAG 265 (269)
T ss_pred HHHH
Confidence 4443
No 44
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=86.50 E-value=1.3 Score=31.19 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=6.2
Q ss_pred HHHHHHHhhccC
Q 024397 228 VIAIIVVKVVNP 239 (268)
Q Consensus 228 iI~~i~~k~~~~ 239 (268)
||++|+|.+..+
T Consensus 14 ii~lIlY~iYnr 25 (68)
T PF05961_consen 14 IIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHhc
Confidence 445555555544
No 45
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=85.32 E-value=17 Score=32.19 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024397 183 MGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (268)
Q Consensus 183 l~~~~~~v~~~~~~l~~a~~~l~~m~rr 210 (268)
|..-...|+.+...+.+....|+.-..|
T Consensus 190 l~~D~~~L~~~~~~~d~n~~~l~~~~~r 217 (251)
T PF09753_consen 190 LKEDNKVLDRTEEGLDRNLSSLKRESKR 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444
No 46
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.32 E-value=14 Score=32.23 Aligned_cols=69 Identities=7% Similarity=0.107 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHH
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLF 220 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~ 220 (268)
...+......+.++..+-...++++..-.+.|......-.+....-..-.+..+.|.++..-++|.-++
T Consensus 133 ~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~ 201 (216)
T KOG0862|consen 133 QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYV 201 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888889999999999999999888888777777777778888888888777776443
No 47
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=84.09 E-value=1.6 Score=28.17 Aligned_cols=31 Identities=16% Similarity=0.460 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCccCCC
Q 024397 217 IMLFLFLIVCGVIAIIVVKVVNPNNKDIRDI 247 (268)
Q Consensus 217 il~~iili~i~iI~~i~~k~~~~~~~~~~~~ 247 (268)
+.+++..+++++.++-+|--|+|.+|+..++
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGppSk~LrDP 37 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGPPSKELRDP 37 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCCCccccCCc
Confidence 3344445666777888888888878777664
No 48
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=83.71 E-value=3.2 Score=28.70 Aligned_cols=25 Identities=8% Similarity=0.281 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHH
Q 024397 202 QLVKEIGRQVATDKCIMLFLFLIVC 226 (268)
Q Consensus 202 ~~l~~m~rr~~~dK~il~~iili~i 226 (268)
....+-.+++.+.++++++++++++
T Consensus 26 ~~~~k~qk~~~~~~~i~~~~~i~~l 50 (59)
T PF09889_consen 26 EEYRKRQKRMRKTQYIFFGIFILFL 50 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555677776655443
No 49
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=79.50 E-value=2.8 Score=30.81 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=5.7
Q ss_pred HHHHHHHHhhccC
Q 024397 227 GVIAIIVVKVVNP 239 (268)
Q Consensus 227 ~iI~~i~~k~~~~ 239 (268)
.|+.+++|-..++
T Consensus 14 ~IVclliya~YRR 26 (92)
T PHA02681 14 SIVCYIVIMMYRR 26 (92)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 50
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=79.42 E-value=1.8 Score=34.41 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q 024397 226 CGVIAIIVVKV 236 (268)
Q Consensus 226 i~iI~~i~~k~ 236 (268)
|++|++|+|.+
T Consensus 78 Ig~Illi~y~i 88 (122)
T PF01102_consen 78 IGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 51
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=78.42 E-value=2.1 Score=27.88 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCccCCC
Q 024397 219 LFLFLIVCGVIAIIVVKVVNPNNKDIRDI 247 (268)
Q Consensus 219 ~~iili~i~iI~~i~~k~~~~~~~~~~~~ 247 (268)
++|..+++++.++-+|--|+|.+|..+++
T Consensus 12 i~i~~lL~~~TgyaiYtaFGppSk~LrDP 40 (46)
T PRK13183 12 ITILAILLALTGFGIYTAFGPPSKELDDP 40 (46)
T ss_pred HHHHHHHHHHhhheeeeccCCcccccCCc
Confidence 34445556667888888888877776664
No 52
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=78.15 E-value=3.1 Score=36.38 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=17.2
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHhhcc
Q 024397 210 QVATDKCIMLFLFLIVCGVIAIIVVKVVN 238 (268)
Q Consensus 210 r~~~dK~il~~iili~i~iI~~i~~k~~~ 238 (268)
|-.+|+++=++|++++|+||++.|.-||+
T Consensus 9 rRK~N~iLNiaI~IV~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 9 RRKTNKILNIAIGIVSLLIIIVAYQLFFG 37 (217)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhheec
Confidence 33466666666666665555655555553
No 53
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=78.09 E-value=3.3 Score=27.53 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhccCCCCccCCCCCCCCCc
Q 024397 226 CGVIAIIVVKVVNPNNKDIRDIPGLAPPA 254 (268)
Q Consensus 226 i~iI~~i~~k~~~~~~~~~~~~~~~~~~~ 254 (268)
+++++-++|.++ ++|+||||+
T Consensus 8 ~G~~vG~~~~~l--------~vp~PAPP~ 28 (49)
T TIGR03510 8 AGLLVGALYSLL--------KVPSPAPPV 28 (49)
T ss_pred HHHHHHHHHHHh--------CCCCCCCch
Confidence 344444555565 467789996
No 54
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=77.94 E-value=50 Score=29.31 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHH
Q 024397 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKAS 201 (268)
Q Consensus 147 ~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~ 201 (268)
.+.+-.+-+..+...+.+..++-..|-.++..=++ ++..-+.+++..++-++
T Consensus 193 t~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~---n~~~g~~h~d~AvksaR 244 (280)
T COG5074 193 TMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQE---NVEQGVGHTDKAVKSAR 244 (280)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHh---hHHHhhhhHHHHHHHHH
Confidence 34445666666666666666666666555443332 23333444444444444
No 55
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=77.81 E-value=4.2 Score=33.70 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=13.0
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhhccCC
Q 024397 215 KCIMLFLFL-IVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 215 K~il~~iil-i~i~iI~~i~~k~~~~~ 240 (268)
|++++++++ ++++..+..+|.|+++.
T Consensus 17 kl~ii~l~~l~l~~~g~gg~~~~~~~~ 43 (162)
T PRK07021 17 KLWLIILILLLLAAAAGAGYSWWLSKE 43 (162)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444444333 33344455666666653
No 56
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.45 E-value=1.2e+02 Score=33.51 Aligned_cols=71 Identities=7% Similarity=0.180 Sum_probs=41.8
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------hHhHHHHHHHHHHHHHH
Q 024397 138 QELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELD------TIQFSIKKASQLVKEIG 208 (268)
Q Consensus 138 r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~------~~~~~l~~a~~~l~~m~ 208 (268)
++.+.....-++........+.+.+.+.+.--..+..+|..-..++......+. +-+..|..++.-+....
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 444444445566666667777777777777777777777776666665555444 22235555554444444
No 57
>CHL00020 psbN photosystem II protein N
Probab=77.28 E-value=2 Score=27.67 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCccCCC
Q 024397 219 LFLFLIVCGVIAIIVVKVVNPNNKDIRDI 247 (268)
Q Consensus 219 ~~iili~i~iI~~i~~k~~~~~~~~~~~~ 247 (268)
++|..+++++.++-+|--|+|.+++.+++
T Consensus 9 i~i~~ll~~~Tgy~iYtaFGppSk~LrDP 37 (43)
T CHL00020 9 IFISGLLVSFTGYALYTAFGQPSKQLRDP 37 (43)
T ss_pred HHHHHHHHHhhheeeeeccCCchhccCCc
Confidence 34445566667888888888877776654
No 58
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=76.90 E-value=1.7 Score=42.50 Aligned_cols=35 Identities=17% Similarity=0.435 Sum_probs=16.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHH
Q 024397 183 MGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCI 217 (268)
Q Consensus 183 l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~i 217 (268)
|..+.+.+++....|++|+++|..+.....++..+
T Consensus 440 L~~vn~sL~~A~~~L~~Sn~iL~~v~~~~~~~~~i 474 (490)
T PF00523_consen 440 LGQVNNSLNNAKDLLDKSNQILDSVNPGISSNSII 474 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 44555566666666666777777666655554333
No 59
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=76.86 E-value=47 Score=34.65 Aligned_cols=14 Identities=7% Similarity=0.213 Sum_probs=7.2
Q ss_pred HHhhhchHHHHHHH
Q 024397 209 RQVATDKCIMLFLF 222 (268)
Q Consensus 209 rr~~~dK~il~~ii 222 (268)
.+....+|+..+++
T Consensus 407 ~~y~~yR~~~~lil 420 (806)
T PF05478_consen 407 EKYDSYRWIVGLIL 420 (806)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445566555444
No 60
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=76.57 E-value=16 Score=28.08 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=32.5
Q ss_pred HHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHh
Q 024397 174 TTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (268)
Q Consensus 174 ~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~ 211 (268)
+....|.|+|.....+++.....|..--..|..|.+|.
T Consensus 60 e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 60 EKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677999999999999988888888888898998884
No 61
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=75.36 E-value=20 Score=25.96 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=39.3
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHhHhHHHH
Q 024397 138 QELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQ---TATTLKGQTDQMGRIVNELDTIQFSIK 198 (268)
Q Consensus 138 r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~---il~eL~~Q~e~l~~~~~~v~~~~~~l~ 198 (268)
+..+..-++-....++..+..+..+...+.--.. +.+.|+.|..+|..+...|.++++.|.
T Consensus 3 ~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 3 QNILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444555666666666666555443333 566788888888888888888877664
No 62
>PHA03386 P10 fibrous body protein; Provisional
Probab=75.06 E-value=13 Score=28.02 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=34.1
Q ss_pred HHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHH
Q 024397 141 IDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSI 197 (268)
Q Consensus 141 l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l 197 (268)
+..-..-....+...+..+..+.+...- ...|+.|..+|..+..+|.++++.|
T Consensus 7 Ll~Ir~dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iL 59 (94)
T PHA03386 7 LTQILDAVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSIL 59 (94)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhc
Confidence 3333344455566666666666665433 5668888888888888887776644
No 63
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=74.75 E-value=7.2 Score=28.77 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.2
Q ss_pred CCccCC
Q 024397 241 NKDIRD 246 (268)
Q Consensus 241 ~~~~~~ 246 (268)
++...+
T Consensus 49 ~~~~s~ 54 (85)
T PF10717_consen 49 NGNSSS 54 (85)
T ss_pred CCCCCC
Confidence 433333
No 64
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=74.63 E-value=5 Score=32.56 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=13.1
Q ss_pred hchHHHHHH-HHHHHHHHHHHHHhhccC
Q 024397 213 TDKCIMLFL-FLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 213 ~dK~il~~i-ili~i~iI~~i~~k~~~~ 239 (268)
.+|++++++ ++++++.++...|.|+.+
T Consensus 2 kkkl~~i~~i~l~~l~~~g~~~~~~~~~ 29 (142)
T PRK07718 2 KNKLIKIMLIILIVIALIGTAALVLVMG 29 (142)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345555543 344444455555555443
No 65
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=74.41 E-value=67 Score=29.05 Aligned_cols=11 Identities=9% Similarity=0.247 Sum_probs=8.1
Q ss_pred HHHHHhhccCC
Q 024397 230 AIIVVKVVNPN 240 (268)
Q Consensus 230 ~~i~~k~~~~~ 240 (268)
+.|+.|++.+.
T Consensus 278 ~Pv~~Kl~~~~ 288 (301)
T PF14362_consen 278 LPVLFKLLSGK 288 (301)
T ss_pred HHHHHHHhcCC
Confidence 77889987653
No 66
>PRK11677 hypothetical protein; Provisional
Probab=73.25 E-value=3.7 Score=33.21 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~~~~ 240 (268)
|+++++.+|+.+||++++.+++.++
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccch
Confidence 5666666666667788888887664
No 67
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=73.12 E-value=55 Score=30.42 Aligned_cols=74 Identities=8% Similarity=0.235 Sum_probs=60.8
Q ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024397 137 NQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (268)
Q Consensus 137 ~r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr 210 (268)
.+..+....+.+......|......+.+.++-=...-.++.........+...+..+...|.+|.+++..++--
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 45666777777888888899888888888777666677777777788889999999999999999999887654
No 68
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=73.10 E-value=4.5 Score=37.39 Aligned_cols=16 Identities=31% Similarity=0.332 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhcc
Q 024397 223 LIVCGVIAIIVVKVVN 238 (268)
Q Consensus 223 li~i~iI~~i~~k~~~ 238 (268)
+|+++||++|+|+++.
T Consensus 162 ii~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 162 IIFLLVLAFIVYSLFL 177 (318)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445567777777764
No 69
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=72.93 E-value=25 Score=28.03 Aligned_cols=86 Identities=12% Similarity=0.181 Sum_probs=60.8
Q ss_pred cHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhch
Q 024397 136 SNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDK 215 (268)
Q Consensus 136 ~~r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK 215 (268)
-+|+++..-...++....+|.+....-.=-.++..+++.--.+|+..+.++..+++.+++.+..--..+.+|..-++..-
T Consensus 42 knq~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~vmkqn 121 (177)
T PF12495_consen 42 KNQQLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSDVMKQN 121 (177)
T ss_pred HhHHHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 34555555555555555555555555444455666777777889999999999999999999888888888887766666
Q ss_pred HHHHHH
Q 024397 216 CIMLFL 221 (268)
Q Consensus 216 ~il~~i 221 (268)
+.+.+-
T Consensus 122 y~lslq 127 (177)
T PF12495_consen 122 YVLSLQ 127 (177)
T ss_pred hhhhhh
Confidence 655543
No 70
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=72.83 E-value=2.6 Score=32.27 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVV 237 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~ 237 (268)
+++.++.++++++|++++|.|+
T Consensus 64 ili~lls~v~IlVily~IyYFV 85 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYYFV 85 (101)
T ss_pred hHHHHHHHHHHHHHHhhheEEE
Confidence 3333333333344455555554
No 71
>PHA03049 IMV membrane protein; Provisional
Probab=72.41 E-value=4.6 Score=28.43 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhccC
Q 024397 216 CIMLFLFLIVCGVIAIIVV-KVVNP 239 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~-k~~~~ 239 (268)
++|++||+.++++|+|-+| |-..+
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk~~~ 29 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKKTTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 5566666666677766544 44434
No 72
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=68.77 E-value=45 Score=24.70 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=26.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHH
Q 024397 144 GKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSI 197 (268)
Q Consensus 144 ~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l 197 (268)
..+.|.++-+.-..+...+.+..+.=..+.+++..+...|...+.-+....-.-
T Consensus 13 t~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~ 66 (92)
T PF03908_consen 13 TRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRD 66 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344433333334444444444444445566666666666666665544433
No 73
>PF15050 SCIMP: SCIMP protein
Probab=68.55 E-value=13 Score=29.46 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=15.6
Q ss_pred CCCCCCCCCccccccccccCC
Q 024397 245 RDIPGLAPPAPARRLLSLQAP 265 (268)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~ 265 (268)
++.|++-||-|.|-++|..+.
T Consensus 63 n~~~~~LPpLPPRg~~s~~~~ 83 (133)
T PF15050_consen 63 NQSPVQLPPLPPRGSPSPEDS 83 (133)
T ss_pred cCCcCCCCCCCCCCCCCcccc
Confidence 457888888888888876653
No 74
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=67.94 E-value=1.9e+02 Score=31.69 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024397 41 QTKQLEELTGRMRECKRLIKEMDREIKDEE 70 (268)
Q Consensus 41 r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~ 70 (268)
.+..|+.+...+.-+..+|.+.+.+...++
T Consensus 1582 a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE 1611 (1758)
T KOG0994|consen 1582 AQDAIQGADRDIRLAQQLLAKVQEETAAAE 1611 (1758)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666555543
No 75
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=67.14 E-value=56 Score=25.19 Aligned_cols=86 Identities=8% Similarity=0.132 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHhH-hHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 024397 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQ-MGRIVNELDTI-QFSIKKASQLVKEIGRQVATDKCIMLFLFLI 224 (268)
Q Consensus 147 ~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~-l~~~~~~v~~~-~~~l~~a~~~l~~m~rr~~~dK~il~~iili 224 (268)
.+.+-..-++.++.++.++...+.+=+.+|..+-+. |.++++++.++ +....+++..+..=---+-.|-|+-++|...
T Consensus 13 l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~VGvaAa 92 (104)
T COG4575 13 LLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQGVGVAAA 92 (104)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 456667777778888888877787778888877554 56788888888 4444555544433222233445666655444
Q ss_pred HHHHHHHH
Q 024397 225 VCGVIAII 232 (268)
Q Consensus 225 ~i~iI~~i 232 (268)
+-++++++
T Consensus 93 VGlllGlL 100 (104)
T COG4575 93 VGLLLGLL 100 (104)
T ss_pred HHHHHHHH
Confidence 43334433
No 76
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=65.80 E-value=6.9 Score=28.81 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024397 216 CIMLFLFLIVCGVIAIIVVKV 236 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~ 236 (268)
.++.++++++++|+++|+|-+
T Consensus 5 ~i~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 5 EILAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp ---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555544
No 77
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=65.39 E-value=11 Score=23.51 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 024397 219 LFLFLIVCGVIAIIVV 234 (268)
Q Consensus 219 ~~iili~i~iI~~i~~ 234 (268)
++.+++++++|.+|++
T Consensus 13 ~l~~llflv~imliif 28 (43)
T PF11395_consen 13 FLSFLLFLVIIMLIIF 28 (43)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444445544333
No 78
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=65.03 E-value=78 Score=26.08 Aligned_cols=58 Identities=12% Similarity=0.316 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHHHHHH---HHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 7 MSPQLEQIHGEIRDNFR---ALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDR 64 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~---~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~ 64 (268)
|+..+..+.+++..+-. .+.+.+..+.+.+..++....+..++..+..++.-|..+..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555444433 44445555555455577777788888888888877777775
No 79
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=64.78 E-value=4.1 Score=37.38 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=12.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHhh
Q 024397 7 MSPQLEQIHGEIRDNFRALSNG 28 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~ 28 (268)
-|+.|+.|+|-.++--.+....
T Consensus 48 TsQRF~EYdErm~~kRqkcKEq 69 (299)
T PF02009_consen 48 TSQRFEEYDERMQEKRQKCKEQ 69 (299)
T ss_pred HHHHHHHHHhhhhhhHHHHHHH
Confidence 4677777777665444333333
No 80
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=64.69 E-value=2.7e+02 Score=32.25 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=54.0
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 024397 143 AGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (268)
Q Consensus 143 ~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~ 206 (268)
.....+++.+..+..-.+.+.+.++.....+..+..-..-++...++++...+.+..=+...+.
T Consensus 1854 ~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k~r~ 1917 (1930)
T KOG0161|consen 1854 RLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAEERADTAESELNKLRSKLRS 1917 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455678889999999999999999999999999999999999999999988888765554444
No 81
>PTZ00046 rifin; Provisional
Probab=64.56 E-value=6.4 Score=36.91 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~~~~ 240 (268)
++..+|.+++|++|++|+|.+++.+
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYR 341 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYR 341 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555556677777777644
No 82
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.40 E-value=1.3e+02 Score=28.81 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 150 ETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMG-RIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 150 ~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~-~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
.-..++..+.+.+.+|-.+-..+. +.+.-.+. .+....-++++-|...+..++....
T Consensus 388 ~l~~qiremkq~v~~t~ni~~~~a---~~~~a~~~y~~~~~~~e~d~~ln~lk~~i~~~~q 445 (497)
T KOG3838|consen 388 LLLGQIREMKQLVEMTDNIVRMAA---HAGVAYGPYGIEHHFLELDHILNLLKEEIRGPAQ 445 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---ccCccccccchHHHHHHHHHHHHHHHHHhccccc
Confidence 334555556666655544443333 22223333 5666666777777777777776665
No 83
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=64.32 E-value=8.8 Score=30.50 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhccCCCCccCCCC
Q 024397 223 LIVCGVIAIIVVKVVNPNNKDIRDIP 248 (268)
Q Consensus 223 li~i~iI~~i~~k~~~~~~~~~~~~~ 248 (268)
+++|++|+|++....|+.+-++++.|
T Consensus 78 Ig~Illi~y~irR~~Kk~~~~~~p~P 103 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKSSSDVQPLP 103 (122)
T ss_dssp HHHHHHHHHHHHHHS-----------
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 34556888888888887666666655
No 84
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=64.13 E-value=73 Score=25.44 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHH
Q 024397 153 QAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFS 196 (268)
Q Consensus 153 ~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~ 196 (268)
++|++.-..+++..++...|-+++..=++-+..++.+++.++..
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQM 111 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444455554444444444444444444444333
No 85
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=63.97 E-value=6.9 Score=33.38 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHH--HHHHHHhhcc
Q 024397 216 CIMLFLFLIVCGV--IAIIVVKVVN 238 (268)
Q Consensus 216 ~il~~iili~i~i--I~~i~~k~~~ 238 (268)
.=|++.|+|++++ |+++.|||+|
T Consensus 161 ~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 161 ASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 3444444444444 4677888876
No 86
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=63.73 E-value=1e+02 Score=27.09 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 164 QTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 164 ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
+|+++-..+..++..+++-.++.-+++.. .....++..+.|.+
T Consensus 110 ~tde~k~~~~~ei~k~r~e~~~ml~evK~---~~E~y~k~~k~~~~ 152 (230)
T PF03904_consen 110 DTDELKNIAQNEIKKVREENKSMLQEVKQ---SHEKYQKRQKSMYK 152 (230)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 66677777887877777666666655444 44444444444443
No 87
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=63.49 E-value=33 Score=21.27 Aligned_cols=24 Identities=17% Similarity=0.222 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024397 201 SQLVKEIGRQVATDKCIMLFLFLIVCGVI 229 (268)
Q Consensus 201 ~~~l~~m~rr~~~dK~il~~iili~i~iI 229 (268)
.+.|-.+.| +|+.+.+.+|++.++
T Consensus 6 hkai~aYEr-----~Wi~F~l~mi~vFi~ 29 (38)
T PF09125_consen 6 HKAIEAYER-----GWIAFALAMILVFIA 29 (38)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----hHHHHHHHHHHHHHH
Confidence 344545544 577666555544333
No 88
>PRK10132 hypothetical protein; Provisional
Probab=63.34 E-value=68 Score=24.84 Aligned_cols=82 Identities=10% Similarity=-0.053 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQ-TDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIA 230 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q-~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI~ 230 (268)
..-+..+..++.++..-+..-+.+|..+ ...|...++.+.+.......++......-.-+-.+-|--++|...+-++++
T Consensus 22 ~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~llG 101 (108)
T PRK10132 22 NQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAAVGIFIG 101 (108)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3333444444444444444444555554 334555555666555543334433333333333444555554444434445
Q ss_pred HHH
Q 024397 231 IIV 233 (268)
Q Consensus 231 ~i~ 233 (268)
+++
T Consensus 102 ~Ll 104 (108)
T PRK10132 102 ALL 104 (108)
T ss_pred HHH
Confidence 443
No 89
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=63.31 E-value=7.1 Score=36.53 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCC
Q 024397 215 KCIMLFLFLIVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 215 K~il~~iili~i~iI~~i~~k~~~~~ 240 (268)
-++..+|.+++|++|++|+|.+++.+
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYR 336 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYR 336 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444554555556677777777644
No 90
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=63.20 E-value=7.7 Score=32.92 Aligned_cols=16 Identities=6% Similarity=0.341 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhccC
Q 024397 224 IVCGVIAIIVVKVVNP 239 (268)
Q Consensus 224 i~i~iI~~i~~k~~~~ 239 (268)
++++++++++|.+++.
T Consensus 29 lll~~~G~~~~~~~~~ 44 (182)
T PRK08455 29 LLLLIVGVIAMLLMGS 44 (182)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3333345556655544
No 91
>PHA02650 hypothetical protein; Provisional
Probab=63.05 E-value=13 Score=27.13 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=7.7
Q ss_pred HHHHHhhccCC
Q 024397 230 AIIVVKVVNPN 240 (268)
Q Consensus 230 ~~i~~k~~~~~ 240 (268)
.+.|+|.+++.
T Consensus 66 ~flYLK~~~r~ 76 (81)
T PHA02650 66 SFFVFKGYTRN 76 (81)
T ss_pred HHHHHHHhccc
Confidence 56778887763
No 92
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=61.23 E-value=12 Score=30.72 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=23.2
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHhhccCC-CCccC
Q 024397 207 IGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPN-NKDIR 245 (268)
Q Consensus 207 m~rr~~~dK~il~~iili~i~iI~~i~~k~~~~~-~~~~~ 245 (268)
+..+.-.+-++.+++++++++++++..+++++++ +.|-+
T Consensus 8 l~~q~~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyR 47 (149)
T PF11694_consen 8 LQSQQSQNDYLRYILIIILLLVLIFFFIKYLRNRLDTKYR 47 (149)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 3344444556666666666666677777777754 44433
No 93
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=60.98 E-value=1.3e+02 Score=27.30 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 024397 178 GQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIV 225 (268)
Q Consensus 178 ~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~ 225 (268)
.=-.-|..+++.+...+..|.+|...=+.-.|.- +|+|+++++++
T Consensus 227 rID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~---~~~Llil~vv~ 271 (283)
T COG5325 227 RIDFNIENTSDNLKNANKELEKAPAHQRRTKKCR---FYLLLILLVVL 271 (283)
T ss_pred HHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccch---hhHHHHHHHHH
Confidence 3345677889999999999999998888877753 56666554433
No 94
>PHA02902 putative IMV membrane protein; Provisional
Probab=60.81 E-value=12 Score=26.28 Aligned_cols=9 Identities=0% Similarity=0.279 Sum_probs=3.5
Q ss_pred HHHHHhhcc
Q 024397 230 AIIVVKVVN 238 (268)
Q Consensus 230 ~~i~~k~~~ 238 (268)
.+++|...+
T Consensus 17 clliya~Yr 25 (70)
T PHA02902 17 CLLIYAAYK 25 (70)
T ss_pred HHHHHHHHH
Confidence 333333333
No 95
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=60.71 E-value=66 Score=23.79 Aligned_cols=73 Identities=5% Similarity=0.068 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHhhhchHHHHHHH
Q 024397 150 ETDQAIKRSQMVVEQTIEVGTQTATTLKGQ-TDQMGRIVNELDTIQFSIKKA-SQLVKEIGRQVATDKCIMLFLF 222 (268)
Q Consensus 150 ~~~~~L~~~~~~~~ete~iG~~il~eL~~Q-~e~l~~~~~~v~~~~~~l~~a-~~~l~~m~rr~~~dK~il~~ii 222 (268)
+...-..++...+..+.+.+....+++..+ .+.+..+++.+.+....+... +........-+-.+-|--++|.
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiA 80 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGIA 80 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 344555566666666666666666666554 455666667776666555433 3444444444434444443333
No 96
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=59.63 E-value=12 Score=32.63 Aligned_cols=29 Identities=21% Similarity=0.529 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 024397 202 QLVKEIGRQVATDKCIMLFLFLIVCGVIA 230 (268)
Q Consensus 202 ~~l~~m~rr~~~dK~il~~iili~i~iI~ 230 (268)
+.+.++++|.+..++++++|+.++++|.+
T Consensus 196 rKvSsvGsrfar~Ra~~ffilal~~avta 224 (275)
T KOG4684|consen 196 RKVSSVGSRFARRRALLFFILALTVAVTA 224 (275)
T ss_pred cchhhhhhHHhhhhhHHHHHHHHHHHHHH
Confidence 56778888888888888887665554443
No 97
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=59.54 E-value=15 Score=29.16 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCC
Q 024397 218 MLFLFLIVCGVIAIIVVKVVNPNN 241 (268)
Q Consensus 218 l~~iili~i~iI~~i~~k~~~~~~ 241 (268)
+.+.++|++++|++|+|-++..++
T Consensus 8 ~~Is~~ill~viglv~y~~l~~~~ 31 (122)
T TIGR02588 8 FGISTLILAAMFGLVAYDWLRYSN 31 (122)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Confidence 344556677778889998887755
No 98
>PRK10404 hypothetical protein; Provisional
Probab=59.09 E-value=79 Score=24.16 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQ-TDQMGRIVNELDTIQFSIKK-ASQLVKEIGRQVATDKCIMLFLFLIVCGVI 229 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q-~e~l~~~~~~v~~~~~~l~~-a~~~l~~m~rr~~~dK~il~~iili~i~iI 229 (268)
..-++.+..++..+..-+..-.++|..+ ...|..+++.+.+....+.. ++........-+-.|-|--++|.+.+-+++
T Consensus 15 ~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~avGiaagvGlll 94 (101)
T PRK10404 15 TLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVL 94 (101)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3334444444444444455555555554 33455555555555554333 344333333333345555555544444444
Q ss_pred HHHH
Q 024397 230 AIIV 233 (268)
Q Consensus 230 ~~i~ 233 (268)
++++
T Consensus 95 G~Ll 98 (101)
T PRK10404 95 GLLL 98 (101)
T ss_pred HHHH
Confidence 5443
No 99
>PHA02844 putative transmembrane protein; Provisional
Probab=58.85 E-value=15 Score=26.48 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=6.0
Q ss_pred HHHHHhhccC
Q 024397 230 AIIVVKVVNP 239 (268)
Q Consensus 230 ~~i~~k~~~~ 239 (268)
.+.|+|.+++
T Consensus 65 ~flYLK~~~r 74 (75)
T PHA02844 65 TFLYLKAVPR 74 (75)
T ss_pred HHHHHheecC
Confidence 4566666654
No 100
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=58.42 E-value=1.2e+02 Score=26.25 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHH
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECK 56 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~ 56 (268)
+|..|+.|-+.++..+......++.+-+-..-+.-+..+...+..+..++
T Consensus 3 ~~~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r 52 (207)
T PF05546_consen 3 LSKKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAAR 52 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888887777777766553222333333444444444444
No 101
>PF12669 P12: Virus attachment protein p12 family
Probab=57.20 E-value=6.4 Score=27.00 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=8.1
Q ss_pred HHHHHHHH-HHHhhccC
Q 024397 224 IVCGVIAI-IVVKVVNP 239 (268)
Q Consensus 224 i~i~iI~~-i~~k~~~~ 239 (268)
|+++++++ +++++++.
T Consensus 7 Ii~~~~~~v~~r~~~k~ 23 (58)
T PF12669_consen 7 IILAAVAYVAIRKFIKD 23 (58)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444 35777753
No 102
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=56.97 E-value=11 Score=30.77 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.4
Q ss_pred HHHHHh
Q 024397 230 AIIVVK 235 (268)
Q Consensus 230 ~~i~~k 235 (268)
++|||.
T Consensus 47 vli~lc 52 (189)
T PF05568_consen 47 VLIYLC 52 (189)
T ss_pred HHHHHH
Confidence 334443
No 103
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=55.65 E-value=9.8 Score=25.06 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 024397 222 FLIVCGVIAIIVV 234 (268)
Q Consensus 222 ili~i~iI~~i~~ 234 (268)
++++++|++++++
T Consensus 20 ~~~Figiv~wa~~ 32 (48)
T cd01324 20 ALFFLGVVVWAFR 32 (48)
T ss_pred HHHHHHHHHHHhC
Confidence 3444444444444
No 104
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=55.43 E-value=13 Score=23.71 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=10.8
Q ss_pred HHHHHHHHHHH-HHHHHhhcc
Q 024397 219 LFLFLIVCGVI-AIIVVKVVN 238 (268)
Q Consensus 219 ~~iili~i~iI-~~i~~k~~~ 238 (268)
|++.+..++|+ .++|-||..
T Consensus 15 ~lVglv~i~iva~~iYRKw~a 35 (43)
T PF08114_consen 15 CLVGLVGIGIVALFIYRKWQA 35 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566 556667753
No 105
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=55.21 E-value=52 Score=24.78 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHH-HHHHHHhhccCCCCc
Q 024397 201 SQLVKEIGRQVATDKCIMLFLFLIVCGV-IAIIVVKVVNPNNKD 243 (268)
Q Consensus 201 ~~~l~~m~rr~~~dK~il~~iili~i~i-I~~i~~k~~~~~~~~ 243 (268)
...+++|..=+..||-.+.++-++.-+| |+.++++.+++..++
T Consensus 55 ~~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~LV~~~~KKe~~~ 98 (100)
T PF06363_consen 55 KNKMKSMLSFVERNKAWFTVVSAVTSFISILLLVTKIFKKEKSK 98 (100)
T ss_pred HHHHHHHHHHHHHcchHhhHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3445666666677886666544443333 466777888765443
No 106
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=54.88 E-value=70 Score=27.01 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024397 44 QLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMN 104 (268)
Q Consensus 44 ~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r~~~~~l~~~~~l~k~~~~ 104 (268)
.+..++.++.+.......|+.|++++.+ +-.-.++......++.+...+....+.+..
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s---~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSS---ALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888888888899999999999854 223456676777777776665555555543
No 107
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=54.79 E-value=3.9e+02 Score=30.82 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=51.1
Q ss_pred HhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHh
Q 024397 142 DAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (268)
Q Consensus 142 ~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~ 211 (268)
....+.+....-.+++....+....+.-..-.-.|..|+.-+.++...+..+...+..+..-+..+.+..
T Consensus 394 ~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~ 463 (1822)
T KOG4674|consen 394 SKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKEL 463 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555667777777777777777777778888888888888888888888888777777766653
No 108
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=54.79 E-value=14 Score=33.60 Aligned_cols=12 Identities=25% Similarity=0.094 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhh
Q 024397 225 VCGVIAIIVVKV 236 (268)
Q Consensus 225 ~i~iI~~i~~k~ 236 (268)
|++||+|||+.-
T Consensus 273 vvliiLYiWlyr 284 (295)
T TIGR01478 273 VVLIILYIWLYR 284 (295)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 109
>PF12526 DUF3729: Protein of unknown function (DUF3729) ; InterPro: IPR022202 This domain of unknown function is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with PF01443 from PFAM, PF01661 from PFAM, PF05417 from PFAM, PF01660 from PFAM, PF00978 from PFAM. There is a single completely conserved residue L that may be functionally important.
Probab=54.74 E-value=6.3 Score=30.87 Aligned_cols=9 Identities=56% Similarity=0.604 Sum_probs=7.8
Q ss_pred ccccccccc
Q 024397 254 APARRLLSL 262 (268)
Q Consensus 254 ~~~~~~~~~ 262 (268)
+++||||.+
T Consensus 103 ~r~RRLL~T 111 (113)
T PF12526_consen 103 ARTRRLLYT 111 (113)
T ss_pred CCceeeecc
Confidence 779999975
No 110
>PHA03164 hypothetical protein; Provisional
Probab=54.49 E-value=18 Score=26.29 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 024397 220 FLFLIVCGVIAIIVV 234 (268)
Q Consensus 220 ~iili~i~iI~~i~~ 234 (268)
++|.++++||+++|+
T Consensus 66 LaIamILfiifvlyv 80 (88)
T PHA03164 66 LAIAMILFIIFVLYV 80 (88)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333334444443
No 111
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=53.87 E-value=25 Score=23.49 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=12.1
Q ss_pred HHHHHHh-hccCCCCccCCCCCCC
Q 024397 229 IAIIVVK-VVNPNNKDIRDIPGLA 251 (268)
Q Consensus 229 I~~i~~k-~~~~~~~~~~~~~~~~ 251 (268)
|++|-|| |+++..-.+--+||-.
T Consensus 19 Igfity~mfV~K~s~q~~YTP~d~ 42 (53)
T PF13131_consen 19 IGFITYKMFVKKASPQIYYTPFDS 42 (53)
T ss_pred HHHHHHHhheecCCCceeeccchh
Confidence 3444445 5666555555566543
No 112
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=53.75 E-value=1.1e+02 Score=24.34 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhh
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQ 30 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~ 30 (268)
+-..|.++|.||+.+...=...+.
T Consensus 25 v~~~l~~LEae~q~L~~kE~~r~~ 48 (126)
T PF09403_consen 25 VESELNQLEAEYQQLEQKEEARYN 48 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888888888655433343
No 113
>PTZ00370 STEVOR; Provisional
Probab=53.65 E-value=14 Score=33.61 Aligned_cols=11 Identities=18% Similarity=-0.001 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q 024397 226 CGVIAIIVVKV 236 (268)
Q Consensus 226 i~iI~~i~~k~ 236 (268)
++||+|||+.-
T Consensus 270 vliilYiwlyr 280 (296)
T PTZ00370 270 VLIILYIWLYR 280 (296)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 114
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=53.25 E-value=8.3 Score=34.97 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVVN 238 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~~ 238 (268)
+|+++.+++++++|+++++|++.
T Consensus 280 iil~IG~vl~i~~Ig~~ifK~~~ 302 (305)
T PF04639_consen 280 IILIIGGVLLIVFIGYFIFKRLM 302 (305)
T ss_pred HHHHHHHHHHHHHhhheeeEeec
Confidence 34444445555566667776654
No 115
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=53.21 E-value=22 Score=28.76 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=15.2
Q ss_pred CCccCCCCCCCCCccccccccccCCC
Q 024397 241 NKDIRDIPGLAPPAPARRLLSLQAPE 266 (268)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (268)
+....+.|.++|++-.|-|.+...|.
T Consensus 25 g~~~~~~~p~a~vv~~r~l~f~d~~~ 50 (135)
T TIGR03054 25 GVGHSGLPAPAAVVASLWLVFEDRPD 50 (135)
T ss_pred CCCccCCCCCCCcEEEEEEEEecCCC
Confidence 44445666566666566666665553
No 116
>PHA02975 hypothetical protein; Provisional
Probab=52.47 E-value=35 Score=24.20 Aligned_cols=7 Identities=14% Similarity=0.482 Sum_probs=3.3
Q ss_pred HHHHHhh
Q 024397 230 AIIVVKV 236 (268)
Q Consensus 230 ~~i~~k~ 236 (268)
.+.|+|.
T Consensus 61 ~flYLK~ 67 (69)
T PHA02975 61 TFLYLKL 67 (69)
T ss_pred HHHHHHh
Confidence 4445554
No 117
>PF08058 NPCC: Nuclear pore complex component; InterPro: IPR012578 Proteins containing this domain are components of the nuclear pore complex []. One member of this domain is Nucleoporin POM34 (Q12445 from SWISSPROT) which is thought to have a role in anchoring peripheral Nups into the pore and mediating pore formation [].
Probab=51.99 E-value=22 Score=29.01 Aligned_cols=42 Identities=33% Similarity=0.543 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCCCccccccccc
Q 024397 217 IMLFLFLIVCGVIAIIVVKVVNPNNKDIRDIPGLAPPAPARRLLSL 262 (268)
Q Consensus 217 il~~iili~i~iI~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (268)
+..++-+++++=|++.+|+++++ .++..|+| =-|. -|+||=+
T Consensus 82 ~~~~i~~i~~~NIv~al~~L~r~-~D~~~DLP--LT~~-QR~LLGL 123 (144)
T PF08058_consen 82 ILHLIQLIFLLNIVIALWPLFRP-KDDCSDLP--LTPK-QRKLLGL 123 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-cCCcccCC--CCHH-HHHHcCC
Confidence 33344445555567788999988 67888888 3333 4555533
No 118
>PHA03030 hypothetical protein; Provisional
Probab=51.48 E-value=11 Score=28.82 Aligned_cols=8 Identities=0% Similarity=0.492 Sum_probs=3.2
Q ss_pred HHHhhccC
Q 024397 232 IVVKVVNP 239 (268)
Q Consensus 232 i~~k~~~~ 239 (268)
.|..+++.
T Consensus 19 fYI~~IkR 26 (122)
T PHA03030 19 FYIRIIKR 26 (122)
T ss_pred HHheeeec
Confidence 33344443
No 119
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=50.71 E-value=17 Score=25.07 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHH-HHHHHHHhhccCCCCc
Q 024397 215 KCIMLFLFLIVCG-VIAIIVVKVVNPNNKD 243 (268)
Q Consensus 215 K~il~~iili~i~-iI~~i~~k~~~~~~~~ 243 (268)
|+++.+-++|+++ ++.+.+-.|.+|.+++
T Consensus 11 riVLLISfiIlfgRl~Y~~I~a~~hHq~k~ 40 (59)
T PF11119_consen 11 RIVLLISFIILFGRLIYSAIGAWVHHQDKK 40 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4666665556666 4455666677775553
No 120
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=50.55 E-value=21 Score=26.17 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHH
Q 024397 215 KCIMLFLFLIVC 226 (268)
Q Consensus 215 K~il~~iili~i 226 (268)
|+++.+++++++
T Consensus 5 kii~iii~li~i 16 (85)
T PF11337_consen 5 KIILIIIILIVI 16 (85)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 121
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=49.27 E-value=1.9e+02 Score=25.62 Aligned_cols=188 Identities=11% Similarity=0.203 Sum_probs=98.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCChhhhHHHH
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIK-DSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEA---RNPPEVNKQLN 82 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~-~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~---~~~~~~r~~~~ 82 (268)
+...+.+++.++..+..+++....+..++. +.+.-......+...+......|.++-..+..+.. ..|...-..+.
T Consensus 50 ~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l 129 (264)
T PF06008_consen 50 LEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRAL 129 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 334577777777777776666555433322 22333333444444444444444444444433322 12322223344
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHhhhccchhhhccCCCCCCCCCcchhhhhhccccHHHHHHhchhhhHHHHHHHHHHHH
Q 024397 83 DEKQSMIKELNS--YVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQM 160 (268)
Q Consensus 83 ~r~r~~~~~l~~--~~~l~k~~~~~~~~~R~~L~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~~~~ 160 (268)
...+.|..+++. |...+........ .-..|+..-... +.....+++.+.......+.+-...|.++..
T Consensus 130 ~ea~~mL~emr~r~f~~~~~~Ae~El~-~A~~LL~~v~~~---------~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~ 199 (264)
T PF06008_consen 130 AEAQRMLEEMRKRDFTPQRQNAEDELK-EAEDLLSRVQKW---------FQKPQQENESLAEAIRDDLNDYNAKLQDLRD 199 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHH-HHHHHHHHHHHH---------HhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555543 3333332221111 112232211000 0001124456666667777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHH
Q 024397 161 VVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLV 204 (268)
Q Consensus 161 ~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l 204 (268)
.+.++......+-.-...-...+.++..+..++...-..+..+|
T Consensus 200 ~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 200 LLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777766666667777777778877777777777777
No 122
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=49.19 E-value=24 Score=26.31 Aligned_cols=19 Identities=21% Similarity=0.067 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 024397 220 FLFLIVCGVIAIIVVKVVN 238 (268)
Q Consensus 220 ~iili~i~iI~~i~~k~~~ 238 (268)
+++.++++|++|++|+.-+
T Consensus 9 ~~~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 9 GVGAVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555566777777643
No 123
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=48.77 E-value=6.9 Score=32.65 Aligned_cols=10 Identities=0% Similarity=-0.579 Sum_probs=5.0
Q ss_pred HHHHHhhccC
Q 024397 230 AIIVVKVVNP 239 (268)
Q Consensus 230 ~~i~~k~~~~ 239 (268)
+...|.|++.
T Consensus 40 g~g~~f~~~~ 49 (166)
T PRK12785 40 GGGGFFFFFS 49 (166)
T ss_pred chheEEEEEe
Confidence 3445556554
No 124
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=48.74 E-value=2.9e+02 Score=27.63 Aligned_cols=25 Identities=4% Similarity=0.019 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 147 TMDETDQAIKRSQMVVEQTIEVGTQ 171 (268)
Q Consensus 147 ~l~~~~~~L~~~~~~~~ete~iG~~ 171 (268)
-+...-..+......+.+.+.....
T Consensus 297 El~~~R~~i~~Lr~klselE~~n~~ 321 (546)
T KOG0977|consen 297 ELRRIRSRISGLRAKLSELESRNSA 321 (546)
T ss_pred HHHHHHhcccchhhhhccccccChh
Confidence 3444455555555555555544433
No 125
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=48.59 E-value=1e+02 Score=22.43 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHH
Q 024397 145 KKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKAS 201 (268)
Q Consensus 145 ~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~ 201 (268)
.+.+++....++.....++.+ ..++-+-+...++.+++++.+++.++.......
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i---~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~ 78 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPI---TKEINDLLHNTNELLEDVNEKLEKVDPVFEAVA 78 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334555555555555544443 344444455556666666665555555444443
No 126
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.26 E-value=1.6e+02 Score=24.48 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024397 41 QTKQLEELTGRMRECKRLIKEMDREIK 67 (268)
Q Consensus 41 r~~~i~~~~~~l~ea~~ll~~me~Ei~ 67 (268)
+...+..++..+.+++..+........
T Consensus 143 ~~~ki~~l~~~i~~~e~~~~~~~~~~~ 169 (218)
T cd07596 143 KPAKVEELEEELEEAESALEEARKRYE 169 (218)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555565666666655554444333
No 127
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=47.74 E-value=14 Score=24.17 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=5.7
Q ss_pred HHHHHHhhccCCCC
Q 024397 229 IAIIVVKVVNPNNK 242 (268)
Q Consensus 229 I~~i~~k~~~~~~~ 242 (268)
+++++|-+ +|++|
T Consensus 23 ~gi~~w~~-~~~~k 35 (49)
T PF05545_consen 23 IGIVIWAY-RPRNK 35 (49)
T ss_pred HHHHHHHH-cccch
Confidence 34444444 34343
No 128
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.51 E-value=37 Score=26.85 Aligned_cols=20 Identities=0% Similarity=0.044 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 024397 217 IMLFLFLIVCGVIAIIVVKV 236 (268)
Q Consensus 217 il~~iili~i~iI~~i~~k~ 236 (268)
+++|+++++++++++++-+-
T Consensus 6 ~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33433443344444443443
No 129
>PRK11637 AmiB activator; Provisional
Probab=47.49 E-value=2.6e+02 Score=26.67 Aligned_cols=24 Identities=13% Similarity=0.343 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 024397 45 LEELTGRMRECKRLIKEMDREIKD 68 (268)
Q Consensus 45 i~~~~~~l~ea~~ll~~me~Ei~~ 68 (268)
+..++..+..+..-|+..+.++..
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~ 100 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQ 100 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 130
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=47.44 E-value=36 Score=19.91 Aligned_cols=17 Identities=24% Similarity=0.381 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhccC
Q 024397 223 LIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 223 li~i~iI~~i~~k~~~~ 239 (268)
+++++++++.+|.+++.
T Consensus 10 llv~lLl~YLvYAL~na 26 (29)
T PRK14750 10 LLVLLLLGYLVYALFNA 26 (29)
T ss_pred HHHHHHHHHHHHHHcCc
Confidence 33444567778877764
No 131
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.33 E-value=1.2e+02 Score=26.59 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhch
Q 024397 182 QMGRIVNELDTIQFSIKKASQLVKEIGRQVATDK 215 (268)
Q Consensus 182 ~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK 215 (268)
+|+++.+.+..+..+|.++...-.-.--+.+.|+
T Consensus 154 kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr 187 (236)
T KOG3287|consen 154 KLDDIEDSIGTIKNNLNKMWQYQALLRAREARDR 187 (236)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4556666666666666666655444444444444
No 132
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=47.26 E-value=19 Score=26.67 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 024397 211 VATDKCIMLFLFLIVCGVIAIIVVKVVNPNNK 242 (268)
Q Consensus 211 ~~~dK~il~~iili~i~iI~~i~~k~~~~~~~ 242 (268)
+.-||.||.+.++.+.+++++|.|--.+..++
T Consensus 33 ~kPNk~iM~~Gl~a~~~c~gYi~Ym~~~~en~ 64 (86)
T PF14937_consen 33 VKPNKPIMAFGLIAITLCVGYIAYMHATYENK 64 (86)
T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34689999987766666777776654444343
No 133
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=47.12 E-value=1.7e+02 Score=24.59 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-hhccCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHH
Q 024397 10 QLEQIHGEIRDNFRALSNGFQK-LDKIKD-SNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQS 87 (268)
Q Consensus 10 ~~~~ye~ei~~~~~~l~~~~~~-l~~~~~-~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r~ 87 (268)
.++.||++|+++-++- -.+++ +.++++ -+.|.+-++.+..--..++.+|+-...-.+-.|- .-+..++.|++.
T Consensus 87 ~v~r~E~~fqeLn~ka-~aLk~iLSriPdEinDR~~FLeTIK~IASaIKkLLd~vN~v~~~~p~----t~~~AvE~rKkE 161 (207)
T KOG4025|consen 87 IVSRYEQDFQELNKKA-IALKRILSRIPDEINDRHAFLETIKLIASAIKKLLDAVNAVYRIVPL----TAQPAVEKRKKE 161 (207)
T ss_pred hhcCCCccHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cccHHHHHHHHH
Confidence 5677888888886542 22233 344432 2455555555544445555555554443343332 223335556666
Q ss_pred HHHHHHHHHHHHHHH
Q 024397 88 MIKELNSYVALRKTY 102 (268)
Q Consensus 88 ~~~~l~~~~~l~k~~ 102 (268)
+..=-.+|..-.|.|
T Consensus 162 FVkYSK~FS~TLKtY 176 (207)
T KOG4025|consen 162 FVKYSKRFSNTLKTY 176 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 544333444444444
No 134
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=46.92 E-value=23 Score=23.56 Aligned_cols=12 Identities=8% Similarity=0.515 Sum_probs=5.3
Q ss_pred HHHHHHHHhhcc
Q 024397 227 GVIAIIVVKVVN 238 (268)
Q Consensus 227 ~iI~~i~~k~~~ 238 (268)
+++++.++-..|
T Consensus 14 ~lLg~~I~~~~K 25 (50)
T PF12606_consen 14 GLLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHHhh
Confidence 344444444444
No 135
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=46.87 E-value=64 Score=20.97 Aligned_cols=8 Identities=38% Similarity=0.576 Sum_probs=3.6
Q ss_pred hHHHHHHH
Q 024397 194 QFSIKKAS 201 (268)
Q Consensus 194 ~~~l~~a~ 201 (268)
.|.+.+|.
T Consensus 9 rsairras 16 (52)
T TIGR01294 9 RSAIRRAS 16 (52)
T ss_pred HHHHHHHH
Confidence 34444444
No 136
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=46.81 E-value=11 Score=28.13 Aligned_cols=20 Identities=25% Similarity=0.710 Sum_probs=12.1
Q ss_pred HHHHHHHHhhccCCCCccCCCCCCCCCc
Q 024397 227 GVIAIIVVKVVNPNNKDIRDIPGLAPPA 254 (268)
Q Consensus 227 ~iI~~i~~k~~~~~~~~~~~~~~~~~~~ 254 (268)
++++-++|.++ .+||||||+
T Consensus 10 G~lvG~iy~ll--------~v~sPAPP~ 29 (90)
T PF07235_consen 10 GLLVGVIYSLL--------KVPSPAPPV 29 (90)
T ss_pred hhHHHHHHHHh--------cCCCCCCcH
Confidence 44444455555 457779995
No 137
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=46.80 E-value=45 Score=24.43 Aligned_cols=7 Identities=43% Similarity=0.202 Sum_probs=2.9
Q ss_pred HHHhhcc
Q 024397 232 IVVKVVN 238 (268)
Q Consensus 232 i~~k~~~ 238 (268)
++.|++.
T Consensus 31 ~~~~~~~ 37 (82)
T TIGR01195 31 GMGKVVG 37 (82)
T ss_pred HHHHHHh
Confidence 3444443
No 138
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.74 E-value=26 Score=28.12 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~~~~ 240 (268)
|+..+|.+++.++|++++..+.+++
T Consensus 8 W~~a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 8 WEYALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchh
Confidence 4444555555566688898888653
No 139
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=46.46 E-value=92 Score=21.20 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=41.6
Q ss_pred HHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHH
Q 024397 141 IDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKAS 201 (268)
Q Consensus 141 l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~ 201 (268)
+.+.+..++++...++++..+..+|-+-=..=-+.|..-+..+..+...+...+..|..-.
T Consensus 3 l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 3 LLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445556666766666666666666555555566677778888888888888877776543
No 140
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=46.46 E-value=24 Score=28.28 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCccCC
Q 024397 220 FLFLIVCGVIAIIVVKVVNPNNKDIRD 246 (268)
Q Consensus 220 ~iili~i~iI~~i~~k~~~~~~~~~~~ 246 (268)
+.++|++..+++++|+|.++..-..|+
T Consensus 109 il~~i~is~~~~~~yr~~r~~~~~~~~ 135 (139)
T PHA03099 109 VLVGIIITCCLLSVYRFTRRTKLPLQD 135 (139)
T ss_pred HHHHHHHHHHHHhhheeeecccCchhh
Confidence 333444455577888999876544444
No 141
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=46.29 E-value=70 Score=23.69 Aligned_cols=16 Identities=0% Similarity=0.353 Sum_probs=6.8
Q ss_pred hHhHHHHHHHHHHHHH
Q 024397 192 TIQFSIKKASQLVKEI 207 (268)
Q Consensus 192 ~~~~~l~~a~~~l~~m 207 (268)
..+.-+.+-+..|+.+
T Consensus 21 QL~qlVsrN~sfirdF 36 (84)
T PF06143_consen 21 QLEQLVSRNRSFIRDF 36 (84)
T ss_pred HHHHHHHhChHHHHHH
Confidence 3333344444444443
No 142
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=45.96 E-value=20 Score=29.81 Aligned_cols=11 Identities=0% Similarity=-0.378 Sum_probs=6.2
Q ss_pred HHHHHHhhccC
Q 024397 229 IAIIVVKVVNP 239 (268)
Q Consensus 229 I~~i~~k~~~~ 239 (268)
++...|.|++.
T Consensus 34 ~g~~~~f~l~~ 44 (170)
T PRK05696 34 GGGAAWFFMGS 44 (170)
T ss_pred HHHHHHhhhcC
Confidence 34556666654
No 143
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=45.88 E-value=28 Score=22.32 Aligned_cols=19 Identities=5% Similarity=0.216 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 024397 221 LFLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 221 iili~i~iI~~i~~k~~~~ 239 (268)
+|++.++++++.++.|+++
T Consensus 18 vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 18 VIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555556554
No 144
>PRK02224 chromosome segregation protein; Provisional
Probab=45.68 E-value=3.8e+02 Score=28.03 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024397 40 RQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (268)
Q Consensus 40 ~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~ 69 (268)
.....+..++..+.++..-++.+..++...
T Consensus 276 ~l~~~i~~~~~~~~~le~e~~~l~~~l~~~ 305 (880)
T PRK02224 276 ELAEEVRDLRERLEELEEERDDLLAEAGLD 305 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334456666666666666566666555443
No 145
>PLN03160 uncharacterized protein; Provisional
Probab=45.51 E-value=13 Score=32.35 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=14.3
Q ss_pred hchHHHHHHHH-HHH-HHHHHHHHhhccCCC
Q 024397 213 TDKCIMLFLFL-IVC-GVIAIIVVKVVNPNN 241 (268)
Q Consensus 213 ~dK~il~~iil-i~i-~iI~~i~~k~~~~~~ 241 (268)
.-+|+.|++++ +++ +++++++|-+|+|++
T Consensus 36 ~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~ 66 (219)
T PLN03160 36 CIKCCGCITATLLILATTILVLVFTVFRVKD 66 (219)
T ss_pred ceEEHHHHHHHHHHHHHHHHheeeEEEEccC
Confidence 33454444332 222 333556666778754
No 146
>PHA02819 hypothetical protein; Provisional
Probab=45.16 E-value=33 Score=24.45 Aligned_cols=8 Identities=38% Similarity=0.609 Sum_probs=3.9
Q ss_pred HHHHHhhc
Q 024397 230 AIIVVKVV 237 (268)
Q Consensus 230 ~~i~~k~~ 237 (268)
.+.|+|.+
T Consensus 63 ~flYLK~~ 70 (71)
T PHA02819 63 IIFYLKVI 70 (71)
T ss_pred HHHHHHhc
Confidence 44455544
No 147
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=44.92 E-value=99 Score=22.46 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=30.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhh---hhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 5 LQMSPQLEQIHGEIRDNFRALSNG---FQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDR 64 (268)
Q Consensus 5 ~~~s~~~~~ye~ei~~~~~~l~~~---~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~ 64 (268)
.+.++++..+++||..+--+.+.- ++.++.......|+... .+++.+++.||.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~-------~~l~~lv~~mE~ 68 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLE-------QELEELVKRMEA 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHH-------HHHHHHHHHHHH
Confidence 456788888888887765544444 66666622212222222 355566666665
No 148
>PHA03097 C-type lectin-like protein; Provisional
Probab=44.84 E-value=45 Score=27.44 Aligned_cols=17 Identities=6% Similarity=-0.079 Sum_probs=9.9
Q ss_pred hccCCCCccCCCCCCCC
Q 024397 236 VVNPNNKDIRDIPGLAP 252 (268)
Q Consensus 236 ~~~~~~~~~~~~~~~~~ 252 (268)
..+|+..+..+++||..
T Consensus 33 ~~~~~~~~~~~~~CP~g 49 (157)
T PHA03097 33 SCKLSPGDRSGLNCRSG 49 (157)
T ss_pred hhcCCCCCCcCCCCCCC
Confidence 34555556667777653
No 149
>PHA03395 p10 fibrous body protein; Provisional
Probab=44.75 E-value=97 Score=23.10 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHhHhHHH
Q 024397 147 TMDETDQAIKRSQMVVEQTIEVG---TQTATTLKGQTDQMGRIVNELDTIQFSI 197 (268)
Q Consensus 147 ~l~~~~~~L~~~~~~~~ete~iG---~~il~eL~~Q~e~l~~~~~~v~~~~~~l 197 (268)
-....++.++..+..+.+...-- .++.+.|+.|..+|..+...|+.+++.|
T Consensus 12 dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~diL 65 (87)
T PHA03395 12 DIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDIL 65 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 34445555555555555543221 2445568888888888888888776654
No 150
>PF15106 TMEM156: TMEM156 protein family
Probab=44.47 E-value=24 Score=30.65 Aligned_cols=16 Identities=25% Similarity=0.494 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhcc
Q 024397 223 LIVCGVIAIIVVKVVN 238 (268)
Q Consensus 223 li~i~iI~~i~~k~~~ 238 (268)
++++..|.+|++|++.
T Consensus 184 lVfiflii~iI~KIle 199 (226)
T PF15106_consen 184 LVFIFLIILIIYKILE 199 (226)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556778888884
No 151
>PF10032 Pho88: Phosphate transport (Pho88); InterPro: IPR019263 This entry represents proteins involved in inorganic phosphate transport, as well as telomere length regulation and maintenance [, , , ].
Probab=44.43 E-value=29 Score=29.76 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCccCCCCCCC
Q 024397 219 LFLFLIVCGVIAIIVVKVVNPNNKDIRDIPGLA 251 (268)
Q Consensus 219 ~~iili~i~iI~~i~~k~~~~~~~~~~~~~~~~ 251 (268)
+++.++++++.+||+.++-+++|..+=-++-|+
T Consensus 37 ~~s~~i~~~~y~yi~~~I~~knD~t~lk~~ep~ 69 (192)
T PF10032_consen 37 VASQLIILGVYLYIFSKIKKKNDLTTLKYVEPA 69 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEEeCCC
Confidence 333344444456677777666555444445333
No 152
>PHA03011 hypothetical protein; Provisional
Probab=44.41 E-value=31 Score=26.43 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=9.7
Q ss_pred HHHHHHHHhhccC
Q 024397 227 GVIAIIVVKVVNP 239 (268)
Q Consensus 227 ~iI~~i~~k~~~~ 239 (268)
.+|.+|+||++..
T Consensus 13 ~iIiII~ykiIN~ 25 (120)
T PHA03011 13 SIIIIILYKIINI 25 (120)
T ss_pred HHHHHHHHHHhcC
Confidence 5667889998864
No 153
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=44.38 E-value=1.1e+02 Score=22.49 Aligned_cols=54 Identities=15% Similarity=0.297 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 10 QLEQIHGEIRDNFRALSNGFQKLDKI-KDSNRQTKQLEELTGRMRECKRLIKEMD 63 (268)
Q Consensus 10 ~~~~ye~ei~~~~~~l~~~~~~l~~~-~~~~~r~~~i~~~~~~l~ea~~ll~~me 63 (268)
-|+.--+++..+|..|+++--.|+.. ...+.=.+..+.|+..|..|+..+...-
T Consensus 11 sfE~~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~Ae~~v~~l~ 65 (81)
T COG1722 11 SFEEALAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQAEQRVEKLL 65 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777778888888888776655431 1222333456777777777776655444
No 154
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=44.29 E-value=4.8e+02 Score=28.89 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024397 9 PQLEQIHGEIRDNFRAL 25 (268)
Q Consensus 9 ~~~~~ye~ei~~~~~~l 25 (268)
+.+..+-.+|++.+++|
T Consensus 1511 eqi~~L~~~I~e~v~sL 1527 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASL 1527 (1758)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45566666666665544
No 155
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=43.86 E-value=21 Score=29.61 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhccC
Q 024397 223 LIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 223 li~i~iI~~i~~k~~~~ 239 (268)
+++++++++++|..++|
T Consensus 12 l~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHHhhhhccCC
Confidence 34444444777766665
No 156
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=43.65 E-value=27 Score=25.23 Aligned_cols=9 Identities=44% Similarity=0.567 Sum_probs=5.7
Q ss_pred cccccccCC
Q 024397 257 RRLLSLQAP 265 (268)
Q Consensus 257 ~~~~~~~~~ 265 (268)
||||.-.||
T Consensus 61 r~llYckRS 69 (74)
T PF11857_consen 61 RRLLYCKRS 69 (74)
T ss_pred cEEEEEecc
Confidence 577766654
No 157
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=43.61 E-value=2.1e+02 Score=24.46 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
+...+..|..+...+..++.+....-.+|..++..|...+.+|+.+...|..++.-+...-+
T Consensus 111 ~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 111 LETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888999999999999999999999999999999999877655443
No 158
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=43.47 E-value=75 Score=26.34 Aligned_cols=17 Identities=6% Similarity=0.050 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhHHHHHH
Q 024397 169 GTQTATTLKGQTDQMGR 185 (268)
Q Consensus 169 G~~il~eL~~Q~e~l~~ 185 (268)
.+++++++..|.|.+..
T Consensus 71 vQ~vlgd~At~gERl~a 87 (156)
T PF08372_consen 71 VQNVLGDVATQGERLQA 87 (156)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666665544
No 159
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=43.41 E-value=6.9 Score=34.23 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=7.2
Q ss_pred HHHHHhhccCC
Q 024397 230 AIIVVKVVNPN 240 (268)
Q Consensus 230 ~~i~~k~~~~~ 240 (268)
++.|+||.||+
T Consensus 176 a~yYfK~~K~K 186 (218)
T PF14283_consen 176 AYYYFKFYKPK 186 (218)
T ss_pred eEEEEEEeccc
Confidence 55666777764
No 160
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=43.40 E-value=1e+02 Score=21.66 Aligned_cols=49 Identities=12% Similarity=0.292 Sum_probs=25.1
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHH----HHHHHHHHHHHHHHHh
Q 024397 186 IVNELDTIQFSIKKASQLVKEIGRQVATDKCIML----FLFLIVCGVIAIIVVK 235 (268)
Q Consensus 186 ~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~----~iili~i~iI~~i~~k 235 (268)
+.+..+...+.+...++++ .+.|+=-.+=+.+. ++.++++++|+++++-
T Consensus 4 ~~~~~e~~~~~lke~~rvl-~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI~l 56 (65)
T COG2443 4 MMDKPEELREFLKEYRRVL-KVARKPDWEEYSKIAKITGLGILLIGIIGFIIYL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777766 34444222223333 2334555666555543
No 161
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=42.94 E-value=1.3e+02 Score=21.91 Aligned_cols=54 Identities=7% Similarity=0.195 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHH
Q 024397 145 KKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIK 198 (268)
Q Consensus 145 ~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~ 198 (268)
+..++.....++.+..-+.++-+-...++++...+.+.++.+-+.+.++...+.
T Consensus 32 ~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~ 85 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVS 85 (90)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455555556666666666666666555543
No 162
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.70 E-value=1.8e+02 Score=25.16 Aligned_cols=20 Identities=10% Similarity=0.365 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 024397 221 LFLIVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 221 iili~i~iI~~i~~k~~~~~ 240 (268)
++++++.|.-+.++|+|...
T Consensus 184 ~~vv~iSi~Qv~ilk~fFt~ 203 (209)
T KOG1693|consen 184 IAVVVISIAQVFILKFFFTD 203 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33455556656666765543
No 163
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=42.19 E-value=1.2e+02 Score=27.53 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhccC
Q 024397 201 SQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 201 ~~~l~~m~rr~~~dK~il~~iili~i~iI~~i~~k~~~~ 239 (268)
.+.|+.++|+.++=|++..++.++ +-+++++||+..-
T Consensus 160 ~k~lnylARNFYNlr~lALflAFa--INFILLFYKVs~~ 196 (274)
T PF06459_consen 160 TKFLNYLARNFYNLRFLALFLAFA--INFILLFYKVSTS 196 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccC
Confidence 578999999988777665443221 1235577887653
No 164
>PF15018 InaF-motif: TRP-interacting helix
Probab=42.12 E-value=40 Score=21.12 Aligned_cols=22 Identities=5% Similarity=0.092 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 024397 217 IMLFLFLIVCGVIAIIVVKVVN 238 (268)
Q Consensus 217 il~~iili~i~iI~~i~~k~~~ 238 (268)
+.+++.+.+.++++.|||-|+=
T Consensus 11 ~~Yl~~VSl~Ai~LsiYY~f~W 32 (38)
T PF15018_consen 11 VAYLFSVSLAAIVLSIYYIFFW 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHheee
Confidence 3445555556677777777654
No 165
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=42.06 E-value=3.5e+02 Score=26.58 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHHHHHHHhhhchHHHHHH-HHHHHHHHHHHHHhhccC
Q 024397 193 IQFSIKKASQLVKEIGRQVATDKCIMLFL-FLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 193 ~~~~l~~a~~~l~~m~rr~~~dK~il~~i-ili~i~iI~~i~~k~~~~ 239 (268)
-.+.+..+.+..+.+..|+...+|.-..+ ++++++|+++++|-+-++
T Consensus 241 ~~~~lk~~dk~Ck~il~K~~~~~c~w~~l~llllvliaG~l~yDv~~h 288 (469)
T PF10151_consen 241 KDESLKECDKACKVILGKMSGSSCPWTRLLLLLLVLIAGFLAYDVRSH 288 (469)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHhhhcC
Confidence 33456777888888888876665543332 333334446666665434
No 166
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.78 E-value=5.1e+02 Score=28.48 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhc
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATD 214 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~d 214 (268)
...+..+.....+...-=......|..-+..+......++.++..|.-....|-.+.|.-..+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~ 551 (1201)
T PF12128_consen 489 QQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPG 551 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCc
Confidence 333333333333333333444455566666666666666666666666666666666665454
No 167
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=41.69 E-value=74 Score=20.08 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=18.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHhhccC
Q 024397 206 EIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 206 ~m~rr~~~dK~il~~iili~i~iI~~i~~k~~~~ 239 (268)
.|+||-.-|.+. .+.+.+.++-.++-|.+||-|
T Consensus 5 dm~RR~lmN~ll-~Gava~~a~~~lyP~~~ffvP 37 (39)
T PF08802_consen 5 DMSRRQLMNLLL-GGAVAVPAGGMLYPYVKFFVP 37 (39)
T ss_dssp -HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHS-
T ss_pred ChhHHHHHHHHH-HhhHHHHHHHHhhhheeEecC
Confidence 588887777544 444444444456666676644
No 168
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.18 E-value=26 Score=27.84 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhccCCC
Q 024397 222 FLIVCGVIAIIVVKVVNPNN 241 (268)
Q Consensus 222 ili~i~iI~~i~~k~~~~~~ 241 (268)
++|+.+||++++.+++.++.
T Consensus 5 ~lvvG~iiG~~~~r~~~~~~ 24 (128)
T PF06295_consen 5 GLVVGLIIGFLIGRLTSSNQ 24 (128)
T ss_pred HHHHHHHHHHHHHHHhccch
Confidence 34444556777777776643
No 169
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=41.03 E-value=1.3e+02 Score=21.90 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=25.3
Q ss_pred HHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHh
Q 024397 176 LKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (268)
Q Consensus 176 L~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~ 211 (268)
|...-++|+++..-+..+.+.|..+...|..|.+..
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~~ 38 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETLRSAKSNMNRVQETV 38 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777777777776653
No 170
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=40.92 E-value=9 Score=34.99 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh
Q 024397 224 IVCGVIAIIVVK 235 (268)
Q Consensus 224 i~i~iI~~i~~k 235 (268)
+++++|++|.|+
T Consensus 160 LIA~iIa~icyr 171 (290)
T PF05454_consen 160 LIAGIIACICYR 171 (290)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhh
Confidence 334455556665
No 171
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=40.39 E-value=35 Score=29.88 Aligned_cols=33 Identities=15% Similarity=-0.001 Sum_probs=15.0
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 024397 209 RQVATDKCIMLFLFLIVCGVIAIIVVKVVNPNN 241 (268)
Q Consensus 209 rr~~~dK~il~~iili~i~iI~~i~~k~~~~~~ 241 (268)
.|....|.-+++=|+|.|++|+||++.++---+
T Consensus 5 ~r~KrRK~N~iLNiaI~IV~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 5 QRQKRRKTNKILNIAIGIVSLLIIIVAYQLFFG 37 (217)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHhhhheec
Confidence 344444444444444444444444444444433
No 172
>PRK15058 cytochrome b562; Provisional
Probab=40.19 E-value=1.4e+02 Score=23.91 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhh
Q 024397 8 SPQLEQIHGEIRDNFRALSNGFQ 30 (268)
Q Consensus 8 s~~~~~ye~ei~~~~~~l~~~~~ 30 (268)
|++|..|.+-++.++..|.....
T Consensus 77 s~e~K~Y~~G~d~Li~qID~a~~ 99 (128)
T PRK15058 77 SPEMKDFRHGFDILVGQIDGALK 99 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888776644443
No 173
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.80 E-value=5.5e+02 Score=28.27 Aligned_cols=62 Identities=23% Similarity=0.447 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhh-------hhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGF-------QKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEE 70 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~-------~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~ 70 (268)
+.+.++..+.++++....+.+.+ +.|+. ..-+++..+..+..++..++.-|+.-..+.-+++
T Consensus 364 ~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~--~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e 432 (1293)
T KOG0996|consen 364 EVEKNEAVKKEIKERAKELKNKFESLKKKFQDLER--EDVKREEKLKRLTSKIKKLEKEIEKARRKKSELE 432 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555555555555554444333 33433 1234444466666666666665555555555544
No 174
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=39.70 E-value=1.6e+02 Score=22.42 Aligned_cols=16 Identities=0% Similarity=0.165 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 024397 10 QLEQIHGEIRDNFRAL 25 (268)
Q Consensus 10 ~~~~ye~ei~~~~~~l 25 (268)
.|..|.+.++.++..|
T Consensus 54 ~~~~Y~~Gl~~li~~i 69 (103)
T PF07361_consen 54 EVKDYQEGLDKLIDQI 69 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 175
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=39.58 E-value=1.8e+02 Score=22.48 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhc
Q 024397 11 LEQIHGEIRDNFRALSNGFQKLDK 34 (268)
Q Consensus 11 ~~~ye~ei~~~~~~l~~~~~~l~~ 34 (268)
++.+..|++.+++++++-++.+..
T Consensus 10 ~~~l~~el~~L~d~lEevL~ssg~ 33 (104)
T COG4575 10 IDQLLAELQELLDTLEEVLKSSGS 33 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 366777888888877777776655
No 176
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=39.51 E-value=2.2e+02 Score=24.00 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 024397 81 LNDEKQSMIKELNSY 95 (268)
Q Consensus 81 ~~~r~r~~~~~l~~~ 95 (268)
+.++..++..+|+.|
T Consensus 149 LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 149 LRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666666653
No 177
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=39.38 E-value=2.4e+02 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024397 42 TKQLEELTGRMRECKRLIKEMDREIKDE 69 (268)
Q Consensus 42 ~~~i~~~~~~l~ea~~ll~~me~Ei~~~ 69 (268)
...+..++..+.+++.-++....+...+
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665555444444443
No 178
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=39.20 E-value=3e+02 Score=26.34 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQL 203 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~ 203 (268)
+......|.+++..+....+.+.. ..-...+.+..+++.++.+...+..-..+
T Consensus 285 l~~~~~al~~~q~~~~~L~~~a~~---~fp~~~~~l~~i~~~Ln~~e~~l~~l~al 337 (406)
T PF04906_consen 285 LTSSQRALSNMQSQVQGLLREAVP---LFPTAQEPLLAIQEDLNSTERSLHQLTAL 337 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hCCCccchHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666666655543332 22222366777777777776666655433
No 179
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=39.20 E-value=25 Score=24.62 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 024397 219 LFLFLIVCGVIAII 232 (268)
Q Consensus 219 ~~iili~i~iI~~i 232 (268)
|+++.|+++|+++|
T Consensus 2 WIiiSIvLai~lLI 15 (66)
T PF07438_consen 2 WIIISIVLAIALLI 15 (66)
T ss_pred hhhHHHHHHHHHHH
Confidence 44444444444433
No 180
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=38.85 E-value=57 Score=26.57 Aligned_cols=10 Identities=10% Similarity=0.351 Sum_probs=5.7
Q ss_pred HHhhhchHHH
Q 024397 209 RQVATDKCIM 218 (268)
Q Consensus 209 rr~~~dK~il 218 (268)
+++.+||.++
T Consensus 4 ~~~~r~~~~~ 13 (164)
T TIGR03061 4 KRLRKNKLLR 13 (164)
T ss_pred HHhhcCcHHH
Confidence 4556677544
No 181
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=38.81 E-value=1.9e+02 Score=22.59 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 38 SNRQTKQLEELTGRMRECKRLIKEMD 63 (268)
Q Consensus 38 ~~~r~~~i~~~~~~l~ea~~ll~~me 63 (268)
++.+......+......+.+.++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (181)
T PF12729_consen 74 PEERQEIEKEIDEARAEIDEALEEYE 99 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554
No 182
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=38.23 E-value=65 Score=23.88 Aligned_cols=20 Identities=15% Similarity=0.509 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 024397 215 KCIMLFLFLIVCGVIAIIVV 234 (268)
Q Consensus 215 K~il~~iili~i~iI~~i~~ 234 (268)
++.++++++++++.++++++
T Consensus 14 ~l~i~l~~~v~~~a~~~v~~ 33 (97)
T PF04999_consen 14 KLIILLVIVVLISALGVVYS 33 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444333333333333433
No 183
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=38.08 E-value=56 Score=28.88 Aligned_cols=29 Identities=10% Similarity=-0.100 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhcc--CCCCccCCCCCCCCCc
Q 024397 226 CGVIAIIVVKVVN--PNNKDIRDIPGLAPPA 254 (268)
Q Consensus 226 i~iI~~i~~k~~~--~~~~~~~~~~~~~~~~ 254 (268)
+.++||+...+.. ++.+-+++.|+.+|..
T Consensus 202 lpv~FY~~s~~~~~~~~r~l~~~~r~~s~~~ 232 (237)
T PF09777_consen 202 LPVLFYLSSYLHSERKKRKLILPKRLKSSLS 232 (237)
T ss_pred HHHHHHHhheeeeccccccccccCcccCccc
Confidence 3444555555543 3355566666665553
No 184
>PHA02844 putative transmembrane protein; Provisional
Probab=37.86 E-value=75 Score=22.95 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVVN 238 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~~ 238 (268)
+..++++++++++++++.+-++|
T Consensus 48 ~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 48 TKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334333333333444444443
No 185
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=37.62 E-value=1.3e+02 Score=20.55 Aligned_cols=61 Identities=15% Similarity=0.308 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhhccCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 6 QMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDS---NRQTKQLEELTGRMRECKRLIKEMDREI 66 (268)
Q Consensus 6 ~~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~---~~r~~~i~~~~~~l~ea~~ll~~me~Ei 66 (268)
.+...|...-.+++..+..|.+.+..+...=.| ..-.....++...+..+...|..+...+
T Consensus 11 ~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l 74 (86)
T PF06013_consen 11 AAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQAL 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777778888887777777665321122 3333334455444555554444444333
No 186
>PRK05529 cell division protein FtsQ; Provisional
Probab=37.49 E-value=34 Score=30.46 Aligned_cols=34 Identities=6% Similarity=0.133 Sum_probs=17.0
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 024397 204 VKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVV 237 (268)
Q Consensus 204 l~~m~rr~~~dK~il~~iili~i~iI~~i~~k~~ 237 (268)
.+.+.||....+.++.+++.+++++++++++.|+
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~ 57 (255)
T PRK05529 24 VRRFTTRIRRRFILLACAVGAVLTLLLFVMLSAY 57 (255)
T ss_pred hhchhhhccchhhhHHHHHHHHHHHHHHHHHhee
Confidence 6677777666555555444333333333333333
No 187
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=37.40 E-value=1.4e+02 Score=29.65 Aligned_cols=42 Identities=12% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024397 57 RLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNS 105 (268)
Q Consensus 57 ~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r~~~~~l~~~~~l~k~~~~~ 105 (268)
.++.+|+. ++ .++.|..+ ..|-.++...|+.++.+.-+|...
T Consensus 555 qI~qEYek-i~-----~dp~y~ee-K~RceYLhsKLaHIK~lI~efDk~ 596 (604)
T KOG4796|consen 555 QILQEYEK-IR-----KDPNYMEE-KQRCEYLHSKLAHIKTLIGEFDKQ 596 (604)
T ss_pred HHHHHHHH-hh-----cCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566653 33 23456543 458889999999999999999764
No 188
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=37.19 E-value=30 Score=31.80 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhcc
Q 024397 223 LIVCGVIAIIVVKVVN 238 (268)
Q Consensus 223 li~i~iI~~i~~k~~~ 238 (268)
+++|++|++|+|.+++
T Consensus 265 IliIVLIMvIIYLILR 280 (299)
T PF02009_consen 265 ILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445556666554
No 189
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=36.19 E-value=68 Score=22.86 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=8.0
Q ss_pred CCCCCCCCcccc
Q 024397 246 DIPGLAPPAPAR 257 (268)
Q Consensus 246 ~~~~~~~~~~~~ 257 (268)
-+|.|+|+|+++
T Consensus 59 TT~tpdPtAptA 70 (78)
T PF11714_consen 59 TTPTPDPTAPTA 70 (78)
T ss_pred CcCCCCCCCccc
Confidence 366678887744
No 190
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=35.92 E-value=1.6e+02 Score=29.54 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhH
Q 024397 1 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQ-LEELTGRMRECKRLIKEMDREIKDEEARNPPEVNK 79 (268)
Q Consensus 1 ~~~~~~~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~-i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~ 79 (268)
+.....|++.|....+.+.+.+..|+.....+....+.-+--.. +.+++.++..+..+.+.|...+..++ ++..
T Consensus 254 l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~-----~~~~ 328 (557)
T COG0497 254 LEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLL-----EYLD 328 (557)
T ss_pred HHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 80 QLNDEKQSMIKELNSYVALRKTYM 103 (268)
Q Consensus 80 ~~~~r~r~~~~~l~~~~~l~k~~~ 103 (268)
++..++..+...-.+..++.+...
T Consensus 329 ~~~~el~~L~~~~~~~~~Le~~~~ 352 (557)
T COG0497 329 KIKEELAQLDNSEESLEALEKEVK 352 (557)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHH
No 191
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=35.90 E-value=1.8e+02 Score=21.46 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCC-----chHHHHHHHHHHHHHHHHHHHH
Q 024397 9 PQLEQIHGEIRDNFRALSNGFQKLDKIKD-----SNRQTKQLEELTGRMRECKRLI 59 (268)
Q Consensus 9 ~~~~~ye~ei~~~~~~l~~~~~~l~~~~~-----~~~r~~~i~~~~~~l~ea~~ll 59 (268)
+++..++..++.....+...+.++-+... ++.+...+..++..+.++..+-
T Consensus 22 ~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~ 77 (105)
T PF12998_consen 22 TLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELS 77 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888887777544322 2455566777766666666543
No 192
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.83 E-value=52 Score=24.30 Aligned_cols=8 Identities=50% Similarity=0.845 Sum_probs=5.8
Q ss_pred CCCCCCCc
Q 024397 247 IPGLAPPA 254 (268)
Q Consensus 247 ~~~~~~~~ 254 (268)
+|+||||+
T Consensus 23 vrsPAPP~ 30 (93)
T COG4317 23 VRSPAPPA 30 (93)
T ss_pred CCCCCCcH
Confidence 45669996
No 193
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=35.58 E-value=84 Score=18.41 Aligned_cols=25 Identities=8% Similarity=0.335 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~~~~ 240 (268)
++.++...+.+++.+|+++-++++.
T Consensus 3 ~~~wls~a~a~~Lf~YLv~ALlRae 27 (29)
T PRK14740 3 VLDWLSLALATGLFVYLLVALLRAD 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555555566677888888773
No 194
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=35.37 E-value=49 Score=30.05 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhccCCC
Q 024397 222 FLIVCGVIAIIVVKVVNPNN 241 (268)
Q Consensus 222 ili~i~iI~~i~~k~~~~~~ 241 (268)
++++++++++|+.++++++.
T Consensus 240 ~v~ll~l~Gii~~~~~r~~~ 259 (281)
T PF12768_consen 240 TVFLLVLIGIILAYIRRRRQ 259 (281)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 34445556667777766644
No 195
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=35.04 E-value=34 Score=34.63 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 024397 217 IMLFLFLIVCGVIAIIVVKVV 237 (268)
Q Consensus 217 il~~iili~i~iI~~i~~k~~ 237 (268)
|++.||+|+++||+++.|.|-
T Consensus 396 ~f~~if~iva~ii~~~L~R~r 416 (807)
T KOG1094|consen 396 IFVAIFLIVALIIALMLWRWR 416 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777777754
No 196
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=34.91 E-value=35 Score=21.63 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 024397 217 IMLFLFLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 217 il~~iili~i~iI~~i~~k~~~~ 239 (268)
++++++++++-+++.++|-++++
T Consensus 23 ~~W~~~i~~~P~iG~i~Yl~~gr 45 (46)
T PF13396_consen 23 ILWLIVILFFPIIGPILYLIFGR 45 (46)
T ss_pred hHHHHHHHHHHHHHHhheEEEeC
Confidence 34555555566777777777765
No 197
>PRK14762 membrane protein; Provisional
Probab=34.79 E-value=51 Score=18.67 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.9
Q ss_pred hHHHHHHH
Q 024397 215 KCIMLFLF 222 (268)
Q Consensus 215 K~il~~ii 222 (268)
|+++|++.
T Consensus 2 ki~lw~i~ 9 (27)
T PRK14762 2 KIILWAVL 9 (27)
T ss_pred eeHHHHHH
Confidence 44555543
No 198
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=34.22 E-value=68 Score=18.78 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhhccC
Q 024397 224 IVCGVIAIIVVKVVNP 239 (268)
Q Consensus 224 i~i~iI~~i~~k~~~~ 239 (268)
+++.+++|.+|.++++
T Consensus 11 lv~lLlgYLvyALi~a 26 (29)
T PRK14748 11 LVFLLLGYLVYALINA 26 (29)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 3334567777777665
No 199
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=34.02 E-value=74 Score=28.39 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhhch---HHHHHHHHHHHHHHHHHHHhh
Q 024397 197 IKKASQLVKEIGRQVATDK---CIMLFLFLIVCGVIAIIVVKV 236 (268)
Q Consensus 197 l~~a~~~l~~m~rr~~~dK---~il~~iili~i~iI~~i~~k~ 236 (268)
|.-..|++=.++|-+..+| .++++-++++.++|+++.|++
T Consensus 198 L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~ 240 (248)
T PF08172_consen 198 LSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYM 240 (248)
T ss_pred CChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777766666 455555566666677666663
No 200
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=34.02 E-value=1.5e+02 Score=29.54 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 024397 39 NRQTKQLEELTGRMRECKRL 58 (268)
Q Consensus 39 ~~r~~~i~~~~~~l~ea~~l 58 (268)
.+.+..+..++..|+-+..+
T Consensus 251 ~e~~e~~~kl~~~l~~l~~~ 270 (538)
T PF05781_consen 251 NESREIIQKLQKSLDVLHQC 270 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455565555555544
No 201
>PF14030 DUF4245: Protein of unknown function (DUF4245)
Probab=33.69 E-value=62 Score=27.01 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=4.7
Q ss_pred cCCCCccCCCC
Q 024397 238 NPNNKDIRDIP 248 (268)
Q Consensus 238 ~~~~~~~~~~~ 248 (268)
.|++.+..++|
T Consensus 29 ~p~~~~~~~v~ 39 (169)
T PF14030_consen 29 NPGRPDDGPVP 39 (169)
T ss_pred cCCCCCCCCCc
Confidence 44344444444
No 202
>PRK14758 hypothetical protein; Provisional
Probab=33.56 E-value=77 Score=18.15 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 024397 218 MLFLFLIVCGVIA 230 (268)
Q Consensus 218 l~~iili~i~iI~ 230 (268)
++++++|++++|+
T Consensus 9 liLivlIlCalia 21 (27)
T PRK14758 9 FILIILILCALIA 21 (27)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555553
No 203
>PRK10132 hypothetical protein; Provisional
Probab=33.51 E-value=2.3e+02 Score=21.94 Aligned_cols=51 Identities=6% Similarity=0.159 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Q 024397 9 PQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIK 60 (268)
Q Consensus 9 ~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~ 60 (268)
...+.+..+|+.++.+++.-+..... ..+++-...-..++..++.++.-+.
T Consensus 12 ~q~e~L~~Dl~~L~~~le~ll~~~~~-~~~~~~~~lR~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 12 DGVQDIQNDVNQLADSLESVLKSWGS-DAKGEAEAARRKAQALLKETRARMH 62 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777888887777766655443 2223333334444445555554444
No 204
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=33.26 E-value=21 Score=36.02 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=15.8
Q ss_pred hchHHHHHHH---HHHHHHHHHHHHhhccC
Q 024397 213 TDKCIMLFLF---LIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 213 ~dK~il~~ii---li~i~iI~~i~~k~~~~ 239 (268)
.|-||+++++ +++++||+++||++-++
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence 4556655443 23445557778887755
No 205
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=33.14 E-value=1.2e+02 Score=26.45 Aligned_cols=50 Identities=8% Similarity=0.270 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHH------HHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Q 024397 9 PQLEQIHGEIRDNFR------ALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIK 60 (268)
Q Consensus 9 ~~~~~ye~ei~~~~~------~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~ 60 (268)
++|..-+++|+.+++ ++...+..+.. .-+.|-..|..+++.|++|+-+|.
T Consensus 50 ~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea--~VEkrD~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 50 KLLDSKDDEFKTLLKLAPEQQKREQLMRTLEA--HVEKRDEVIQQLQKNLKSAEVILT 105 (272)
T ss_pred HHHHhccHHHHHHHHHhHhHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455666666666654 22222222222 123333446666666666665543
No 206
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=32.98 E-value=1e+02 Score=21.22 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 024397 215 KCIMLFLFLIVCGVIA 230 (268)
Q Consensus 215 K~il~~iili~i~iI~ 230 (268)
+-..++++++++++++
T Consensus 36 ~~~~~i~~~~~i~~l~ 51 (59)
T PF09889_consen 36 RKTQYIFFGIFILFLA 51 (59)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345565555555553
No 207
>PRK14775 lipoprotein signal peptidase; Provisional
Probab=32.94 E-value=51 Score=27.65 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhccCCCCccCCCCCCCCCcc
Q 024397 224 IVCGVIAIIVVKVVNPNNKDIRDIPGLAPPAP 255 (268)
Q Consensus 224 i~i~iI~~i~~k~~~~~~~~~~~~~~~~~~~~ 255 (268)
|+++++++++..++.+. + -+.-|.++|||-
T Consensus 136 I~iGv~lll~~~~~~~~-~-~~~~~~~~~~~~ 165 (170)
T PRK14775 136 VTCGVICFLCLEVMYHA-K-ACVDTSGDPDAL 165 (170)
T ss_pred HHHHHHHHHHHHHhccc-c-cccccCCCchhh
Confidence 44445444444444332 2 112223688874
No 208
>PRK04863 mukB cell division protein MukB; Provisional
Probab=32.85 E-value=7.8e+02 Score=27.98 Aligned_cols=55 Identities=11% Similarity=0.311 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhhhhccC------CchHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhhh
Q 024397 16 GEIRDNFRALSNGFQKLDKIK------DSNRQTKQLEELTGRMRECKR----------LIKEMDREIKDEE 70 (268)
Q Consensus 16 ~ei~~~~~~l~~~~~~l~~~~------~~~~r~~~i~~~~~~l~ea~~----------ll~~me~Ei~~~~ 70 (268)
.+.+.-+..+...++.+.++. ..+.-...+.+|...+..|++ -|.+++..+..+.
T Consensus 861 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~ 931 (1486)
T PRK04863 861 QQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQ 931 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444555555566555542 112223345555555544443 2666666666664
No 209
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=32.62 E-value=1.5e+02 Score=29.37 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=15.7
Q ss_pred CCccCCCCCCCCCccccccccccCCCC
Q 024397 241 NKDIRDIPGLAPPAPARRLLSLQAPEH 267 (268)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (268)
.+--..+|-+-.|.++||+.+...+-|
T Consensus 362 ~gpere~p~~~~p~~~~~~~~id~~~~ 388 (549)
T PF05934_consen 362 GGPEREPPQALEPGDRRRQREIDYRQH 388 (549)
T ss_pred CCccccCCCCCCcccccchhhhccccc
Confidence 333345554445666888888775543
No 210
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=32.46 E-value=15 Score=29.03 Aligned_cols=35 Identities=14% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhccC
Q 024397 204 VKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 204 l~~m~rr~~~dK~il~~iili~i~iI~~i~~k~~~~ 239 (268)
|+.+.+-+..+|++++++ ++++++++++|..+.+|
T Consensus 5 L~~l~~~l~r~~~~i~~~-~~l~~~~a~~~~~~~~~ 39 (152)
T PF02706_consen 5 LRDLLRILWRRKWLIIIV-TLLFAILAFIYAFFAPP 39 (152)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcc
Confidence 344445555555554443 34444555555544433
No 211
>PRK10404 hypothetical protein; Provisional
Probab=32.33 E-value=2.3e+02 Score=21.61 Aligned_cols=51 Identities=6% Similarity=0.107 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 12 EQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMD 63 (268)
Q Consensus 12 ~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me 63 (268)
+.++.+|+.++++++.-+..... ..+++-...-..++..|++++.-+....
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~-~a~e~~~~lR~r~~~~L~~ar~~l~~~~ 58 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGD-PADQKYVELKARAEKALDDVKKRVSQAS 58 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45666777777776666554333 1223322333344444555554444333
No 212
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.23 E-value=7.3e+02 Score=27.42 Aligned_cols=66 Identities=8% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHhHhHHHHHHH---HHHHHHHHHhhhc
Q 024397 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQT-------DQMGRIVNELDTIQFSIKKAS---QLVKEIGRQVATD 214 (268)
Q Consensus 149 ~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~-------e~l~~~~~~v~~~~~~l~~a~---~~l~~m~rr~~~d 214 (268)
.+-...|.+....+...++=-.+.-.+|..=+ .++...++++.+..+.+..++ ++|..+.|=-..+
T Consensus 538 ~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG 613 (1293)
T KOG0996|consen 538 KEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESG 613 (1293)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcC
Confidence 33344444444444443333333333333333 344466666666666555443 5666666543333
No 213
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=31.89 E-value=54 Score=29.35 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhccC
Q 024397 216 CIMLFLFLIVCGVIAIIVV-KVVNP 239 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~-k~~~~ 239 (268)
|+.|++|++++++++|+++ .|+..
T Consensus 202 ~f~wl~i~~~l~~~~Y~i~g~~~n~ 226 (268)
T PF09451_consen 202 FFTWLFIILFLFLAAYLIFGSWYNY 226 (268)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheee
Confidence 5555555555555544433 34443
No 214
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=31.87 E-value=5.4e+02 Score=25.83 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHhHhHHHHHHHHHHHHHHH
Q 024397 153 QAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVN--------ELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 153 ~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~--------~v~~~~~~l~~a~~~l~~m~r 209 (268)
..|.-.-..+.+. ||....++|..|.+.+.++.+ +.++....+.++...=+.|+|
T Consensus 254 a~LT~LmA~l~eL--i~~~s~e~lk~~~el~~klsea~~kd~ekKA~Eyee~vrKAEE~qK~mgC 316 (593)
T PRK15374 254 ARLTMLMAMFIEI--VGKNTEESLQNDLALFNALQEGRQAEMEKKSAEFQEETRKAEETNRIMGC 316 (593)
T ss_pred HHHHHHHHHHHHH--HhhhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444333 788888888888887766544 344455555555544444444
No 215
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=31.31 E-value=64 Score=25.35 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhccCCCCccCCCCCCCCCc
Q 024397 225 VCGVIAIIVVKVVNPNNKDIRDIPGLAPPA 254 (268)
Q Consensus 225 ~i~iI~~i~~k~~~~~~~~~~~~~~~~~~~ 254 (268)
.++++++.+|++.+|+..-..|..|..|..
T Consensus 58 tl~~lg~a~~~~yr~~~~c~~g~~C~~~~~ 87 (116)
T PF02411_consen 58 TLLFLGYAFWRLYRPRKACEPGSACARPQS 87 (116)
T ss_pred HHHHHHHHHHHHHccccccCCCCCCCCchH
Confidence 344567788888877544455666666554
No 216
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=31.08 E-value=52 Score=27.49 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 024397 219 LFLFLIVCGVIAIIVVKVVN 238 (268)
Q Consensus 219 ~~iili~i~iI~~i~~k~~~ 238 (268)
++++.+..++|+|+++++++
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33344444556666667665
No 217
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=30.92 E-value=1.4e+02 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=21.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 74 PPEVNKQLNDEKQSMIKELNSYVALRKTYM 103 (268)
Q Consensus 74 ~~~~r~~~~~r~r~~~~~l~~~~~l~k~~~ 103 (268)
.|.|.. ...|-..+...|..++++...|.
T Consensus 72 ~p~y~~-~K~Rc~yL~~KL~HIK~~I~~yD 100 (101)
T PF07303_consen 72 DPNYQE-KKKRCEYLHNKLSHIKQLIQDYD 100 (101)
T ss_dssp SHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHH-HHHHHHHHHHHHHHHHHHHHHcc
Confidence 446654 45688899999999988887764
No 218
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=30.80 E-value=55 Score=26.32 Aligned_cols=27 Identities=4% Similarity=0.159 Sum_probs=17.3
Q ss_pred hchHHHHHHHHHHHHHH-HHHHHhhccC
Q 024397 213 TDKCIMLFLFLIVCGVI-AIIVVKVVNP 239 (268)
Q Consensus 213 ~dK~il~~iili~i~iI-~~i~~k~~~~ 239 (268)
.-|+++++++.++++++ +++|.+.+.+
T Consensus 110 ~~Rvllgl~~al~vlvAEv~l~~~y~~k 137 (142)
T PF11712_consen 110 PYRVLLGLFGALLVLVAEVVLYIRYLRK 137 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677777666676666 6666666543
No 219
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=30.74 E-value=73 Score=23.64 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 024397 204 VKEIGRQ 210 (268)
Q Consensus 204 l~~m~rr 210 (268)
+++--|+
T Consensus 5 ~kK~K~k 11 (96)
T PF13800_consen 5 LKKAKRK 11 (96)
T ss_pred HHHHHHH
Confidence 3333333
No 220
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=30.60 E-value=2.8e+02 Score=22.15 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCCC
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVVNPNNKDIRDIPGLAPP 253 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~~~~~~~~~~~~~~~~~ 253 (268)
|++.. +...++..+.+-+++++.+.. +-|+|-||
T Consensus 92 lliag-v~~~vLagGavAfsivRRs~~---~ePsp~pP 125 (133)
T PF10814_consen 92 LLIAG-VAVAVLAGGAVAFSIVRRSSR---PEPSPLPP 125 (133)
T ss_pred hHHHH-HHHHHHhccceEEEEeecCCC---CCCCCCCC
Confidence 44444 333333446677777776432 55556666
No 221
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=30.51 E-value=43 Score=28.23 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=20.6
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhccC
Q 024397 205 KEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 205 ~~m~rr~~~dK~il~~iili~i~iI~~i~~k~~~~ 239 (268)
..+++|+-+.++|++.. .++.+++++|+||.+..
T Consensus 76 ~~v~~rlk~t~lI~~al-Afl~Cv~~Lv~YKa~wY 109 (186)
T PF06387_consen 76 EEVSERLKVTRLIAFAL-AFLGCVVFLVMYKAIWY 109 (186)
T ss_pred cccccccchhHHHHHHH-HHHHHHHHHHhheeeee
Confidence 34566665655555443 34445668888887754
No 222
>PRK13831 conjugal transfer protein TrbI; Provisional
Probab=30.50 E-value=72 Score=30.78 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 024397 227 GVIAIIVVK 235 (268)
Q Consensus 227 ~iI~~i~~k 235 (268)
+++++|+|-
T Consensus 36 ~~~~~i~~g 44 (432)
T PRK13831 36 LFLGVIFYG 44 (432)
T ss_pred HHHHHHHHH
Confidence 333444443
No 223
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=30.33 E-value=2.4e+02 Score=21.35 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVV 237 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~ 237 (268)
|++.+|..|+-.+|+.+.--+|
T Consensus 75 wilGlvgTi~gsliia~lr~~f 96 (98)
T PF11166_consen 75 WILGLVGTIFGSLIIALLRTIF 96 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555444443433333
No 224
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=30.31 E-value=58 Score=28.12 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 024397 215 KCIMLFLFLIVCGVIAIIVVKVV 237 (268)
Q Consensus 215 K~il~~iili~i~iI~~i~~k~~ 237 (268)
|++||.++++.++.+.+++.|++
T Consensus 14 k~vm~~Ll~~Si~s~aiiieR~~ 36 (211)
T TIGR02797 14 KAVMIGLALASVVTWTIWIAKSV 36 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777666555545566665643
No 225
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=30.24 E-value=88 Score=23.21 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.8
Q ss_pred HHHHHh
Q 024397 206 EIGRQV 211 (268)
Q Consensus 206 ~m~rr~ 211 (268)
.+.||+
T Consensus 3 ~i~kK~ 8 (96)
T PF13800_consen 3 KILKKA 8 (96)
T ss_pred hHHHHH
Confidence 344554
No 226
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=30.22 E-value=2.1e+02 Score=20.48 Aligned_cols=7 Identities=0% Similarity=0.050 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 024397 154 AIKRSQM 160 (268)
Q Consensus 154 ~L~~~~~ 160 (268)
+|+++.+
T Consensus 23 RLdeiee 29 (75)
T COG4064 23 RLDEIEE 29 (75)
T ss_pred HHHHHHH
Confidence 3333333
No 227
>COG5346 Predicted membrane protein [Function unknown]
Probab=30.09 E-value=2.9e+02 Score=22.08 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=11.4
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHH
Q 024397 188 NELDTIQFSIKKASQLVKEIGRQ 210 (268)
Q Consensus 188 ~~v~~~~~~l~~a~~~l~~m~rr 210 (268)
+.++.-+-...+...+...+.|+
T Consensus 70 H~~~~k~~~~q~r~~~~~~~tri 92 (136)
T COG5346 70 HAIDLKNLKIQRRGQLYAKLTRI 92 (136)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Confidence 34444444444555555555554
No 228
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=30.00 E-value=42 Score=22.80 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 024397 219 LFLFLIVCGVI 229 (268)
Q Consensus 219 ~~iili~i~iI 229 (268)
|+||++++++|
T Consensus 6 wlIIviVlgvI 16 (55)
T PF11446_consen 6 WLIIVIVLGVI 16 (55)
T ss_pred hHHHHHHHHHH
Confidence 44444444444
No 229
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=30.00 E-value=2.3e+02 Score=23.31 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHHHHHHHHH
Q 024397 45 LEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYV 96 (268)
Q Consensus 45 i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r~~~~~l~~~~ 96 (268)
...++..++....+|..++ |+... ..--..+..+++.++..|..|+
T Consensus 101 cdsvD~sik~~y~liakce-ELn~~-----M~~v~~La~qIK~Ik~~lD~lE 146 (149)
T PF10157_consen 101 CDSVDASIKSMYTLIAKCE-ELNES-----MKPVYKLAQQIKDIKKLLDLLE 146 (149)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555 33321 1111236667777766666544
No 230
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.98 E-value=5.5e+02 Score=26.86 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=9.5
Q ss_pred HHHhHhHHHHHHHHHHHHHHHH
Q 024397 189 ELDTIQFSIKKASQLVKEIGRQ 210 (268)
Q Consensus 189 ~v~~~~~~l~~a~~~l~~m~rr 210 (268)
.+|=..-+...|...|..+.-.
T Consensus 695 ~ldl~G~~~~eA~~~l~~~ld~ 716 (771)
T TIGR01069 695 TLDLRGQRSEEALDRLEKFLND 716 (771)
T ss_pred eEECCCCCHHHHHHHHHHHHHH
Confidence 3333333444455444444433
No 231
>PRK11281 hypothetical protein; Provisional
Probab=29.92 E-value=7.8e+02 Score=27.05 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024397 167 EVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (268)
Q Consensus 167 ~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr 210 (268)
++-....+.|..|++.+..+..+-..+.+.+++..+..+.+.-+
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eq 328 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQ 328 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666788888888888888888888888888887765544
No 232
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=29.89 E-value=75 Score=18.00 Aligned_cols=16 Identities=6% Similarity=0.393 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhccC
Q 024397 224 IVCGVIAIIVVKVVNP 239 (268)
Q Consensus 224 i~i~iI~~i~~k~~~~ 239 (268)
+.+++.++.++-.++|
T Consensus 7 v~~~L~~YL~~aLl~P 22 (25)
T PF09604_consen 7 VAVALFVYLFYALLRP 22 (25)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 3445556777777776
No 233
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.77 E-value=7.6e+02 Score=26.89 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=12.5
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHhhhchHHHHH
Q 024397 189 ELDTIQFSIKKASQLVKEIGRQVATDKCIMLF 220 (268)
Q Consensus 189 ~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~ 220 (268)
...++.-.+..-...|+.+.+. -+||+-.|+
T Consensus 444 ~i~~l~k~i~~~~~~l~~lk~~-k~dkvs~FG 474 (1074)
T KOG0250|consen 444 EILQLRKKIENISEELKDLKKT-KTDKVSAFG 474 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-ccchhhhcc
Confidence 3333333333333334333332 455555443
No 234
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.61 E-value=3.7e+02 Score=23.21 Aligned_cols=96 Identities=6% Similarity=0.033 Sum_probs=44.2
Q ss_pred cccHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHH---HHHH
Q 024397 134 SMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE---IGRQ 210 (268)
Q Consensus 134 ~~~~r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~---m~rr 210 (268)
....+.++-...+.+.+..+.|+++..... +.-.+.-+.+......+.++..+.......+..++..+.. -...
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444455555555443322 2222333333444444455555555555566555544433 3333
Q ss_pred hhhchHHHHHHHHHHHHHHHHH
Q 024397 211 VATDKCIMLFLFLIVCGVIAII 232 (268)
Q Consensus 211 ~~~dK~il~~iili~i~iI~~i 232 (268)
.-.+..+-||+.--.++++++|
T Consensus 165 ~~~~~~~~wf~~Gg~v~~~Gll 186 (206)
T PRK10884 165 KQRTIIMQWFMYGGGVAGIGLL 186 (206)
T ss_pred HHHHHHHHHHHHchHHHHHHHH
Confidence 3333344445444444444544
No 235
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.51 E-value=8.2e+02 Score=27.18 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 024397 9 PQLEQIHGEIRDN 21 (268)
Q Consensus 9 ~~~~~ye~ei~~~ 21 (268)
..+..++.++..+
T Consensus 799 ~ei~~l~~qie~l 811 (1311)
T TIGR00606 799 MELKDVERKIAQQ 811 (1311)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 236
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=29.48 E-value=7.2e+02 Score=26.53 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhHhHHH
Q 024397 182 QMGRIVNELDTIQFSI 197 (268)
Q Consensus 182 ~l~~~~~~v~~~~~~l 197 (268)
.+..+...+......+
T Consensus 477 ~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 477 EYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 237
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=29.43 E-value=1.2e+02 Score=19.70 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 024397 194 QFSIKKA 200 (268)
Q Consensus 194 ~~~l~~a 200 (268)
.+.+.+|
T Consensus 9 rsairra 15 (52)
T PF04272_consen 9 RSAIRRA 15 (52)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 238
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=29.38 E-value=1.3e+02 Score=23.92 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhccCC---CCccCCCCCCCCCcc
Q 024397 226 CGVIAIIVVKVVNPN---NKDIRDIPGLAPPAP 255 (268)
Q Consensus 226 i~iI~~i~~k~~~~~---~~~~~~~~~~~~~~~ 255 (268)
+++..+.+.++++|+ ..|+..--|--||..
T Consensus 21 ~~~~~l~l~~lL~p~~~~~~K~~~YE~G~~p~g 53 (123)
T COG0838 21 LGVLMLFLSKLLGPRRPNPEKLSPYECGNPPFG 53 (123)
T ss_pred HHHHHHHHHHHhCCCCCCccccCccccCCCCCC
Confidence 344456667777653 566666667666755
No 239
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=29.16 E-value=2.3e+02 Score=20.65 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 024397 8 SPQLEQIHGEIRDNFRAL 25 (268)
Q Consensus 8 s~~~~~ye~ei~~~~~~l 25 (268)
.++|+....||..+..++
T Consensus 3 ~elLd~ir~Ef~~~~~e~ 20 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEA 20 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788888888776654
No 240
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=28.86 E-value=46 Score=30.33 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCC
Q 024397 221 LFLIVCGVIAIIVVKVVNPNNK 242 (268)
Q Consensus 221 iili~i~iI~~i~~k~~~~~~~ 242 (268)
++||+++||++|+|=|+-++.|
T Consensus 266 lvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556667777878877544
No 241
>PRK09720 cybC cytochrome b562; Provisional
Probab=28.58 E-value=2.7e+02 Score=21.31 Aligned_cols=23 Identities=9% Similarity=0.264 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhh
Q 024397 8 SPQLEQIHGEIRDNFRALSNGFQ 30 (268)
Q Consensus 8 s~~~~~ye~ei~~~~~~l~~~~~ 30 (268)
|++|.+|..-++.++..|.....
T Consensus 49 s~e~K~y~~Gld~lI~qID~A~~ 71 (100)
T PRK09720 49 SPEMKDFRHGFDILVGQIDDALK 71 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888777654443
No 242
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=28.54 E-value=54 Score=27.00 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~~~~ 240 (268)
+++|++=++++++.+++++...++.
T Consensus 106 ~lLW~~Pv~llllG~~~~~~~~rrr 130 (153)
T COG3088 106 LLLWGLPVVLLLLGGVLLVRRARRR 130 (153)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 6777654444444455555555543
No 243
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=28.49 E-value=4.1e+02 Score=23.38 Aligned_cols=20 Identities=10% Similarity=0.326 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 024397 50 GRMRECKRLIKEMDREIKDE 69 (268)
Q Consensus 50 ~~l~ea~~ll~~me~Ei~~~ 69 (268)
..++.-+.+|.+|..|...+
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L 44 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEEL 44 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555554
No 244
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=28.44 E-value=77 Score=23.42 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=12.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhh
Q 024397 213 TDKCIMLFLFLIVCGVIAIIVVKV 236 (268)
Q Consensus 213 ~dK~il~~iili~i~iI~~i~~k~ 236 (268)
.|-+++.+++.|++.+|...|-+.
T Consensus 4 ~Da~~~~V~V~IVclliya~YRR~ 27 (92)
T PHA02681 4 LDALLTVIVISIVCYIVIMMYRRS 27 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 354555555555555554455444
No 245
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.37 E-value=3.7e+02 Score=22.80 Aligned_cols=63 Identities=6% Similarity=0.192 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHHHH---HHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024397 7 MSPQLEQIHGEIRDN---FRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~---~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~ 69 (268)
|...+.-|++.++.+ ...+.+.|..|++....++-...+.++.....+.++-|..+....+.+
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 334444444433332 234455555555544445555555555555555555566665444443
No 246
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=28.33 E-value=3.2e+02 Score=23.96 Aligned_cols=28 Identities=11% Similarity=0.419 Sum_probs=13.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024397 183 MGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (268)
Q Consensus 183 l~~~~~~v~~~~~~l~~a~~~l~~m~rr 210 (268)
|.++...++..+-++++++.++..+.-|
T Consensus 17 L~rle~qi~q~~~~~~~~qs~l~~~~~r 44 (251)
T COG5415 17 LSRLESQIHQLDVALKKSQSILSQWQSR 44 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555444443
No 247
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=28.29 E-value=94 Score=26.47 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=3.4
Q ss_pred HHHHHhhcc
Q 024397 230 AIIVVKVVN 238 (268)
Q Consensus 230 ~~i~~k~~~ 238 (268)
++++|.++|
T Consensus 29 ~~l~~~~~k 37 (201)
T TIGR02866 29 ALLAYVVWK 37 (201)
T ss_pred HHHHHhhhh
Confidence 333333334
No 248
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=28.28 E-value=38 Score=31.76 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=8.9
Q ss_pred cccHHHHHHHHHHH
Q 024397 6 QMSPQLEQIHGEIR 19 (268)
Q Consensus 6 ~~s~~~~~ye~ei~ 19 (268)
+-|.+|++|+|-.+
T Consensus 70 qTsQRF~EYdERM~ 83 (353)
T TIGR01477 70 QTSQRFEEYDERMQ 83 (353)
T ss_pred HHHHHHHhHHHHHH
Confidence 35677777777443
No 249
>PRK15406 oligopeptide ABC transporter permease OppC; Provisional
Probab=28.05 E-value=1.2e+02 Score=27.73 Aligned_cols=35 Identities=11% Similarity=0.287 Sum_probs=15.7
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhccC
Q 024397 205 KEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 205 ~~m~rr~~~dK~il~~iili~i~iI~~i~~k~~~~ 239 (268)
+.+.|+...+|..+++++++++.+++.++--++-|
T Consensus 27 ~~~~~~~~~~~~~~~g~~il~~~~~~a~~~p~~~~ 61 (302)
T PRK15406 27 QDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQ 61 (302)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445555667655443333322333333444444
No 250
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=27.93 E-value=58 Score=18.68 Aligned_cols=17 Identities=12% Similarity=0.483 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhccCC
Q 024397 224 IVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 224 i~i~iI~~i~~k~~~~~ 240 (268)
+.+++++|.++-+++|.
T Consensus 6 l~~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 6 LAVGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHHHhCHH
Confidence 34455567777777763
No 251
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=27.88 E-value=85 Score=22.45 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 024397 219 LFLFLIVCGVIAIIV 233 (268)
Q Consensus 219 ~~iili~i~iI~~i~ 233 (268)
+++++++++.+++|+
T Consensus 7 ~l~~~v~~~~~~~v~ 21 (85)
T TIGR02209 7 LLLLAILVSAISVVS 21 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 252
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=27.84 E-value=98 Score=27.10 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=6.4
Q ss_pred HhhhchHHHHHHHHHH
Q 024397 210 QVATDKCIMLFLFLIV 225 (268)
Q Consensus 210 r~~~dK~il~~iili~ 225 (268)
++...-++-|++|+++
T Consensus 36 ~~iG~fLlWyfviilv 51 (243)
T PF15468_consen 36 GAIGSFLLWYFVIILV 51 (243)
T ss_pred chhhhHHHHHHHHHHH
Confidence 3344433334444333
No 253
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=27.70 E-value=1.4e+02 Score=22.03 Aligned_cols=7 Identities=14% Similarity=0.506 Sum_probs=3.3
Q ss_pred HHHhhcc
Q 024397 232 IVVKVVN 238 (268)
Q Consensus 232 i~~k~~~ 238 (268)
++-|++.
T Consensus 35 l~~~~~~ 41 (85)
T PRK03814 35 LMSKLIP 41 (85)
T ss_pred HHHHHcC
Confidence 3445553
No 254
>PHA02902 putative IMV membrane protein; Provisional
Probab=27.70 E-value=98 Score=21.74 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVVN 238 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~~ 238 (268)
+.+..+++++++.++|..|+-.+
T Consensus 6 fvi~~v~v~Ivclliya~YrR~k 28 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAAYKRYK 28 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444555555555553
No 255
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=27.66 E-value=1e+02 Score=26.51 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=12.2
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHhh
Q 024397 207 IGRQVATDKCIMLFLFLIVCGVIAIIVVKV 236 (268)
Q Consensus 207 m~rr~~~dK~il~~iili~i~iI~~i~~k~ 236 (268)
+.+.+..++++ ++++++++++++++|..+
T Consensus 13 l~~~l~r~~~~-ill~~ll~~~~a~~~~~~ 41 (226)
T TIGR01006 13 LLKKLWKRKLL-ILIVALIFLIISFIYTFF 41 (226)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHe
Confidence 33333333343 333444444455555443
No 256
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=27.58 E-value=86 Score=20.53 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhccC
Q 024397 223 LIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 223 li~i~iI~~i~~k~~~~ 239 (268)
+++++++.+-+|||+++
T Consensus 28 avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 28 AVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445667888999864
No 257
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=27.56 E-value=51 Score=30.03 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.4
Q ss_pred HHHHHHHhhccC
Q 024397 228 VIAIIVVKVVNP 239 (268)
Q Consensus 228 iI~~i~~k~~~~ 239 (268)
||++|.|.+.++
T Consensus 286 livLiaYli~Rr 297 (306)
T PF01299_consen 286 LIVLIAYLIGRR 297 (306)
T ss_pred HHHHHhheeEec
Confidence 334444544444
No 258
>PTZ00046 rifin; Provisional
Probab=27.53 E-value=41 Score=31.68 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=9.6
Q ss_pred cccHHHHHHHHHHHH
Q 024397 6 QMSPQLEQIHGEIRD 20 (268)
Q Consensus 6 ~~s~~~~~ye~ei~~ 20 (268)
+-|.+|++|+|-.++
T Consensus 67 qTsQRF~EYdERM~~ 81 (358)
T PTZ00046 67 QTSQRFEEYDERMKE 81 (358)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356778888774443
No 259
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=27.37 E-value=87 Score=23.89 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 024397 215 KCIMLFLFLIVCGVIAIIVVK 235 (268)
Q Consensus 215 K~il~~iili~i~iI~~i~~k 235 (268)
|.+++.++.+++.||++|+-+
T Consensus 15 K~~~FA~L~i~~FiILLIi~~ 35 (121)
T PF10669_consen 15 KIMFFAFLFIVVFIILLIITK 35 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444433
No 260
>PTZ00370 STEVOR; Provisional
Probab=27.36 E-value=51 Score=30.09 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhccCCCC
Q 024397 222 FLIVCGVIAIIVVKVVNPNNK 242 (268)
Q Consensus 222 ili~i~iI~~i~~k~~~~~~~ 242 (268)
+|++++||++|.|=|+-++.|
T Consensus 263 vllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 263 VLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 345556667778878877543
No 261
>PRK15111 antimicrobial peptide ABC transporter permease SapC; Provisional
Probab=27.35 E-value=1e+02 Score=27.91 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=16.6
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhccC
Q 024397 205 KEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 205 ~~m~rr~~~dK~il~~iili~i~iI~~i~~k~~~~ 239 (268)
+.+.|+...||..+++++++++.+++.++.-++-|
T Consensus 17 ~~~~~~~~~~~~~~~~~~il~~~~~~a~~~p~~~~ 51 (296)
T PRK15111 17 RTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAP 51 (296)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44456667777665544333332333333334434
No 262
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=27.33 E-value=48 Score=27.27 Aligned_cols=16 Identities=19% Similarity=0.465 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhcc
Q 024397 223 LIVCGVIAIIVVKVVN 238 (268)
Q Consensus 223 li~i~iI~~i~~k~~~ 238 (268)
+=.|+|+++++|+++|
T Consensus 88 lYtiGI~~f~lY~l~K 103 (152)
T PF15361_consen 88 LYTIGIVLFILYTLFK 103 (152)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666666665
No 263
>PRK10780 periplasmic chaperone; Provisional
Probab=26.92 E-value=3.5e+02 Score=22.09 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=17.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQKLDK 34 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~~l~~ 34 (268)
+...|+.++.+++..-.+++.....+.+
T Consensus 48 le~~~~~~q~el~~~~~elq~~~~~~q~ 75 (165)
T PRK10780 48 LENEFKGRASELQRMETDLQAKMQKLQR 75 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666666666544
No 264
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=26.82 E-value=39 Score=30.25 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHH
Q 024397 203 LVKEIGRQVATDKCIMLFLFLIVCGV 228 (268)
Q Consensus 203 ~l~~m~rr~~~dK~il~~iili~i~i 228 (268)
.+.+++.+....++++++++.+++++
T Consensus 185 KvSSVG~~faRkR~i~f~llgllfli 210 (256)
T PF09788_consen 185 KVSSVGPRFARKRAIIFFLLGLLFLI 210 (256)
T ss_pred eeccccchHhhhHHHHHHHHHHHHHH
Confidence 44566666666677776655443333
No 265
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=26.78 E-value=71 Score=28.38 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 024397 215 KCIMLFLFLIVCGVIAIIVVKVV 237 (268)
Q Consensus 215 K~il~~iili~i~iI~~i~~k~~ 237 (268)
|++||.++++.++-+++|+.|++
T Consensus 24 k~Vm~~Ll~~Si~swaiIieR~~ 46 (244)
T PRK10414 24 KCVMIGLILASVVTWAIFFSKSV 46 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777766555545566666654
No 266
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=26.64 E-value=85 Score=21.07 Aligned_cols=10 Identities=10% Similarity=0.461 Sum_probs=3.6
Q ss_pred HHHHHhhccC
Q 024397 230 AIIVVKVVNP 239 (268)
Q Consensus 230 ~~i~~k~~~~ 239 (268)
+++...+.+|
T Consensus 17 ~~~~~~i~~p 26 (70)
T PF00672_consen 17 WLLARRITRP 26 (70)
T ss_dssp HH--HTTCCC
T ss_pred HHHHHHHHHH
Confidence 3344444545
No 267
>PF06683 DUF1184: Protein of unknown function (DUF1184); InterPro: IPR009568 This family contains a number of hypothetical proteins of unknown function from Arabidopsis thaliana.
Probab=26.59 E-value=1e+02 Score=25.98 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=33.8
Q ss_pred HhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhccCCCCccC
Q 024397 191 DTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPNNKDIR 245 (268)
Q Consensus 191 ~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI~~i~~k~~~~~~~~~~ 245 (268)
|++.+.|----++++....+..+| - +.=-++.++.+++.+.+||+|+--|
T Consensus 54 DdirsmL~FC~~l~k~a~~~~~~~-p----Vv~rLl~Vm~YV~~tyIKPKNgVyq 103 (191)
T PF06683_consen 54 DDIRSMLWFCYKLLKYAGKDPFPD-P----VVERLLRVMHYVFSTYIKPKNGVYQ 103 (191)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCc-h----HHHHHHHhhhhhhhcccCCCccccc
Confidence 566677777777777776665566 1 1123345788999999999985544
No 268
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=26.50 E-value=98 Score=22.25 Aligned_cols=8 Identities=0% Similarity=0.185 Sum_probs=3.0
Q ss_pred HHHHHhhc
Q 024397 230 AIIVVKVV 237 (268)
Q Consensus 230 ~~i~~k~~ 237 (268)
+++++-++
T Consensus 62 ~~l~flYL 69 (72)
T PF12575_consen 62 VLLTFLYL 69 (72)
T ss_pred HHHHHHHh
Confidence 33334333
No 269
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=26.47 E-value=44 Score=26.01 Aligned_cols=10 Identities=0% Similarity=-0.240 Sum_probs=5.1
Q ss_pred HHHHHhhccC
Q 024397 230 AIIVVKVVNP 239 (268)
Q Consensus 230 ~~i~~k~~~~ 239 (268)
+++|+.+++|
T Consensus 15 ~i~yF~~iRP 24 (109)
T PRK05886 15 GGFMYFASRR 24 (109)
T ss_pred HHHHHHHccH
Confidence 4444445555
No 270
>PRK00523 hypothetical protein; Provisional
Probab=26.42 E-value=55 Score=23.50 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=3.9
Q ss_pred HHHHHhhcc
Q 024397 230 AIIVVKVVN 238 (268)
Q Consensus 230 ~~i~~k~~~ 238 (268)
+++.-|.++
T Consensus 23 ffiark~~~ 31 (72)
T PRK00523 23 YFVSKKMFK 31 (72)
T ss_pred HHHHHHHHH
Confidence 444444443
No 271
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=26.15 E-value=3.4e+02 Score=21.61 Aligned_cols=61 Identities=15% Similarity=0.310 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhcc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKI---KDSNRQTKQLEELTGRMRECKRLIKEMDREIK 67 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~~l~~~---~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~ 67 (268)
+.+.++.+..+++..-.+++....++.+. ...+.+.....+++....++......+..++.
T Consensus 41 l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 104 (158)
T PF03938_consen 41 LQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQ 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666665555442 13355555666666666666655555554433
No 272
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=26.10 E-value=20 Score=27.14 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhccC
Q 024397 224 IVCGVIAIIVVKVVNP 239 (268)
Q Consensus 224 i~i~iI~~i~~k~~~~ 239 (268)
++.++|++++|.|+.+
T Consensus 78 ~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 78 VVGGLVGFLCWWFVCR 93 (96)
T ss_pred HHHHHHHHHhheeEEe
Confidence 3334555555555543
No 273
>COG4499 Predicted membrane protein [Function unknown]
Probab=25.94 E-value=1.1e+02 Score=29.31 Aligned_cols=25 Identities=20% Similarity=0.055 Sum_probs=13.5
Q ss_pred chHHHHH-HHHHHHHHHHHHHHhhcc
Q 024397 214 DKCIMLF-LFLIVCGVIAIIVVKVVN 238 (268)
Q Consensus 214 dK~il~~-iili~i~iI~~i~~k~~~ 238 (268)
-||+-++ |+++++++|.+.|+.|+.
T Consensus 220 fk~~giGliillvl~li~~~Y~~f~~ 245 (434)
T COG4499 220 FKYFGIGLIILLVLLLIYFTYYYFSN 245 (434)
T ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHc
Confidence 3566553 444555556555666553
No 274
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=25.90 E-value=1.1e+02 Score=22.23 Aligned_cols=22 Identities=5% Similarity=0.297 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 024397 217 IMLFLFLIVCGVIAIIVVKVVN 238 (268)
Q Consensus 217 il~~iili~i~iI~~i~~k~~~ 238 (268)
++..|+++++++.++.|+.|.+
T Consensus 54 ~l~ail~lL~a~Ya~fyl~ls~ 75 (79)
T PF15168_consen 54 VLAAILVLLLAFYAFFYLNLSK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3333333444444555555543
No 275
>PRK02224 chromosome segregation protein; Provisional
Probab=25.76 E-value=7.8e+02 Score=25.69 Aligned_cols=35 Identities=6% Similarity=0.126 Sum_probs=15.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 024397 171 QTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVK 205 (268)
Q Consensus 171 ~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~ 205 (268)
.+..++..-.+.+..+..++......+....+.|.
T Consensus 650 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~ 684 (880)
T PRK02224 650 EAREDKERAEEYLEQVEEKLDELREERDDLQAEIG 684 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444554444444444444444333
No 276
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.73 E-value=4.4e+02 Score=24.19 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=5.6
Q ss_pred CCCccCCCC
Q 024397 240 NNKDIRDIP 248 (268)
Q Consensus 240 ~~~~~~~~~ 248 (268)
++++|.|++
T Consensus 271 ~~~~I~~~s 279 (314)
T PF04111_consen 271 DKDKIGGVS 279 (314)
T ss_dssp CTTEECTCE
T ss_pred cCCccCCee
Confidence 366677764
No 277
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=25.73 E-value=2.6e+02 Score=26.59 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=8.8
Q ss_pred CCCCCCCCCccccccccc
Q 024397 245 RDIPGLAPPAPARRLLSL 262 (268)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~ 262 (268)
.++|+--|||-. .+|.-
T Consensus 266 ~~~P~~~~Pa~v-~~l~~ 282 (511)
T PF09972_consen 266 REPPEDLSPAVV-GYLYD 282 (511)
T ss_pred eCCCCCCChHHh-hHhhc
Confidence 356655666644 44433
No 278
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.62 E-value=84 Score=25.92 Aligned_cols=10 Identities=30% Similarity=0.531 Sum_probs=5.5
Q ss_pred HHHHHhhccC
Q 024397 230 AIIVVKVVNP 239 (268)
Q Consensus 230 ~~i~~k~~~~ 239 (268)
+++|++..+|
T Consensus 24 ~~~~~~s~~P 33 (161)
T COG5353 24 ALFFWKSMKP 33 (161)
T ss_pred HHHHhHhcCc
Confidence 5555555555
No 279
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=25.59 E-value=96 Score=21.47 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=3.1
Q ss_pred ccCCCCc
Q 024397 237 VNPNNKD 243 (268)
Q Consensus 237 ~~~~~~~ 243 (268)
++|++|+
T Consensus 30 yr~~~K~ 36 (60)
T COG4736 30 YRPGKKG 36 (60)
T ss_pred hcccchh
Confidence 3454443
No 280
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.36 E-value=5.4e+02 Score=23.68 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 024397 182 QMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVV 234 (268)
Q Consensus 182 ~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI~~i~~ 234 (268)
-++.+.-++.+..-.|.+|.+ ..|+-..=+||++++++|+++++++|+.
T Consensus 254 NvEqt~~~v~~a~keL~KAe~----yQk~~~k~~~i~~L~l~ii~llvllilk 302 (305)
T KOG0809|consen 254 NVEQTQVRVEDALKELHKAER----YQKRNKKMKVILMLTLLIIALLVLLILK 302 (305)
T ss_pred chhhhhhhHHhHHHHHHHHHH----HHhcCCceEehHHHHHHHHHHHHHHHhh
Confidence 345666677777777777764 4555555678877766555444444443
No 281
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=25.35 E-value=3.2e+02 Score=25.54 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 38 SNRQTKQLEELTGRMRECKRLIKEMDR 64 (268)
Q Consensus 38 ~~~r~~~i~~~~~~l~ea~~ll~~me~ 64 (268)
+.+..+.+.+++..+.+++..+.+||.
T Consensus 63 ~~e~~~~i~~L~~~Ik~r~~~l~DmEa 89 (330)
T PF07851_consen 63 SAEERELIEKLEEDIKERRCQLFDMEA 89 (330)
T ss_pred ChhHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 345667788888888888888888883
No 282
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=25.24 E-value=80 Score=27.68 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 024397 215 KCIMLFLFLIVCGVIAIIVVKVV 237 (268)
Q Consensus 215 K~il~~iili~i~iI~~i~~k~~ 237 (268)
|++||+++++.++.+++++.|++
T Consensus 15 k~vm~~Ll~~Si~s~aIiieR~~ 37 (227)
T PRK10801 15 KLIMLILIGFSIASWAIIIQRTR 37 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777655555555566665544
No 283
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=25.23 E-value=24 Score=27.22 Aligned_cols=8 Identities=13% Similarity=0.679 Sum_probs=0.0
Q ss_pred HHHHHHHh
Q 024397 228 VIAIIVVK 235 (268)
Q Consensus 228 iI~~i~~k 235 (268)
++++.+++
T Consensus 14 ~~~~~~~~ 21 (110)
T PF10694_consen 14 IIIFVFIR 21 (110)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 284
>PRK11637 AmiB activator; Provisional
Probab=25.20 E-value=6e+02 Score=24.17 Aligned_cols=27 Identities=11% Similarity=0.469 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024397 43 KQLEELTGRMRECKRLIKEMDREIKDE 69 (268)
Q Consensus 43 ~~i~~~~~~l~ea~~ll~~me~Ei~~~ 69 (268)
..+..++..++..+.-|+..+.++..+
T Consensus 82 ~qi~~~~~~i~~~~~~i~~~~~ei~~l 108 (428)
T PRK11637 82 EAISQASRKLRETQNTLNQLNKQIDEL 108 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666566666555544
No 285
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.99 E-value=74 Score=22.73 Aligned_cols=9 Identities=22% Similarity=0.183 Sum_probs=4.4
Q ss_pred HHHHHhhcc
Q 024397 230 AIIVVKVVN 238 (268)
Q Consensus 230 ~~i~~k~~~ 238 (268)
++|.-|.++
T Consensus 22 ~fiark~~~ 30 (71)
T COG3763 22 FFIARKQMK 30 (71)
T ss_pred HHHHHHHHH
Confidence 444555554
No 286
>PRK01844 hypothetical protein; Provisional
Probab=24.86 E-value=60 Score=23.31 Aligned_cols=9 Identities=22% Similarity=0.087 Sum_probs=3.9
Q ss_pred HHHHHhhcc
Q 024397 230 AIIVVKVVN 238 (268)
Q Consensus 230 ~~i~~k~~~ 238 (268)
+++.-|.++
T Consensus 22 ff~ark~~~ 30 (72)
T PRK01844 22 FFIARKYMM 30 (72)
T ss_pred HHHHHHHHH
Confidence 444444443
No 287
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=24.84 E-value=1.6e+02 Score=20.40 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHh
Q 024397 199 KASQLVKEIGRQV 211 (268)
Q Consensus 199 ~a~~~l~~m~rr~ 211 (268)
.|..-|+.|+|+-
T Consensus 10 TA~~FL~RvGr~q 22 (60)
T PF06072_consen 10 TATEFLRRVGRQQ 22 (60)
T ss_pred cHHHHHHHHhHHH
Confidence 3455566666653
No 288
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.74 E-value=1.1e+03 Score=26.94 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024397 44 QLEELTGRMRECKRLIKEMDREIKDEEA 71 (268)
Q Consensus 44 ~i~~~~~~l~ea~~ll~~me~Ei~~~~~ 71 (268)
.+..+...+..++..+++.+.++..++.
T Consensus 1021 ~l~slksslq~~~e~L~E~eqe~~~~g~ 1048 (1486)
T PRK04863 1021 VLASLKSSYDAKRQMLQELKQELQDLGV 1048 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444455555555555555555555543
No 289
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.68 E-value=2.6e+02 Score=20.20 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcc-CCchHHHHHHHHHHHHHHHHHHHHH
Q 024397 10 QLEQIHGEIRDNFRALSNGFQKLDKI-KDSNRQTKQLEELTGRMRECKRLIK 60 (268)
Q Consensus 10 ~~~~ye~ei~~~~~~l~~~~~~l~~~-~~~~~r~~~i~~~~~~l~ea~~ll~ 60 (268)
-|+..=+++..++..|+++=-.|+.. ....+-...++.|+..|+.|+.-|.
T Consensus 7 sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~ 58 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVN 58 (76)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556667777666653333321 1122333345556666666554333
No 290
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=24.66 E-value=25 Score=24.69 Aligned_cols=11 Identities=9% Similarity=0.410 Sum_probs=0.4
Q ss_pred HHHHHHHhhcc
Q 024397 228 VIAIIVVKVVN 238 (268)
Q Consensus 228 iI~~i~~k~~~ 238 (268)
+|++++|++-+
T Consensus 28 LIlf~iyR~rk 38 (64)
T PF01034_consen 28 LILFLIYRMRK 38 (64)
T ss_dssp ---------S-
T ss_pred HHHHHHHHHHh
Confidence 33445555543
No 291
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=24.61 E-value=3.5e+02 Score=21.28 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhh
Q 024397 8 SPQLEQIHGEIRDNFRALSNGFQKL 32 (268)
Q Consensus 8 s~~~~~ye~ei~~~~~~l~~~~~~l 32 (268)
.+..+.|+.++..+..++..-...+
T Consensus 16 ~~~~~~~~~~~~~~~~dl~~q~~~a 40 (132)
T PF07926_consen 16 KEQEEDAEEQLQSLREDLESQAKIA 40 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444433
No 292
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=24.57 E-value=60 Score=27.99 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q 024397 216 CIMLFLFLIVCGVI 229 (268)
Q Consensus 216 ~il~~iili~i~iI 229 (268)
|++|.+|.+.++||
T Consensus 64 WvLY~VI~VSaaVI 77 (207)
T PF10812_consen 64 WVLYAVIGVSAAVI 77 (207)
T ss_pred EeehHHHHHHHHHH
Confidence 66676666555555
No 293
>PHA02650 hypothetical protein; Provisional
Probab=24.55 E-value=98 Score=22.64 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=5.5
Q ss_pred HHHHHHHhhccC
Q 024397 228 VIAIIVVKVVNP 239 (268)
Q Consensus 228 iI~~i~~k~~~~ 239 (268)
+++++.+.++|-
T Consensus 61 i~~l~~flYLK~ 72 (81)
T PHA02650 61 IVALFSFFVFKG 72 (81)
T ss_pred HHHHHHHHHHHH
Confidence 334445444543
No 294
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=24.54 E-value=2.8e+02 Score=20.17 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHhHHH
Q 024397 180 TDQMGRIVNELDTIQFSI 197 (268)
Q Consensus 180 ~e~l~~~~~~v~~~~~~l 197 (268)
.+.|+.++++|+-+++.+
T Consensus 21 ~~rLD~iEeKVEftn~Ei 38 (77)
T PRK01026 21 QKRLDEIEEKVEFTNAEI 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666667777766665
No 295
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=24.37 E-value=2.3e+02 Score=19.18 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhhhhhc
Q 024397 17 EIRDNFRALSNGFQKLDK 34 (268)
Q Consensus 17 ei~~~~~~l~~~~~~l~~ 34 (268)
-++.++..++.+|+.+..
T Consensus 7 ~v~~lL~qmq~kFq~mS~ 24 (54)
T PF06825_consen 7 FVQNLLQQMQDKFQTMSD 24 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566666665433
No 296
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=24.24 E-value=86 Score=27.14 Aligned_cols=22 Identities=41% Similarity=0.398 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 024397 215 KCIMLFLFLIVCGVIAIIVVKV 236 (268)
Q Consensus 215 K~il~~iili~i~iI~~i~~k~ 236 (268)
|++||.++++.++.+++++.|+
T Consensus 14 ~~vm~~Ll~~Sii~~aviieR~ 35 (215)
T TIGR02796 14 KLVMLILLLASIISWAIIFQKF 35 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577765554444455555554
No 297
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=24.23 E-value=1.6e+02 Score=22.68 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=18.3
Q ss_pred cccHHHHHHHHHHHHHHH-HHHhhhhh
Q 024397 6 QMSPQLEQIHGEIRDNFR-ALSNGFQK 31 (268)
Q Consensus 6 ~~s~~~~~ye~ei~~~~~-~l~~~~~~ 31 (268)
+|.+..++||+.+..+.+ ++++++..
T Consensus 63 Ty~~Q~k~Ye~a~~~~~~~~lqkRle~ 89 (104)
T PF11460_consen 63 TYMQQRKDYEEAVDQLTNEELQKRLEE 89 (104)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 467899999999977765 34444443
No 298
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.22 E-value=3.7e+02 Score=21.41 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024397 44 QLEELTGRMRECKRLIKEMDREIKDE 69 (268)
Q Consensus 44 ~i~~~~~~l~ea~~ll~~me~Ei~~~ 69 (268)
.|..++.++++..++.+++..++..+
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v 94 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEV 94 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888877777655
No 299
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.11 E-value=2.6e+02 Score=23.84 Aligned_cols=61 Identities=11% Similarity=0.260 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHH
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIM 218 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il 218 (268)
-+-|.++++-++||+-+=..+++.+-.-.|+|+++-.+ .++|....+..=.=+|+ +|.||.
T Consensus 136 ad~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~K----Se~Ls~qSKmfYKsAKK--~NsCC~ 196 (198)
T KOG0861|consen 136 ADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSK----SENLSLQSKMFYKSAKK--TNSCCI 196 (198)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH----HHhhhHHHHHHHHHHhh--cCCcee
Confidence 45567788889999999999999999999988776554 34455555554444443 666664
No 300
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=23.97 E-value=2.6e+02 Score=19.56 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccC---Cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHH
Q 024397 10 QLEQIHGEIRDNFRALSNGFQKLDKIK---DS---NRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLND 83 (268)
Q Consensus 10 ~~~~ye~ei~~~~~~l~~~~~~l~~~~---~~---~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~ 83 (268)
++..|..++.++..=|...-..+.... +. ......++.+...+...+..++.+......+.. ..+.....+..
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~-~~~~~~~~i~~ 80 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID-SGPEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-cCCCcHHHHHH
Confidence 456777777777776666655553321 11 233344555666666666666666655555532 22333444555
Q ss_pred HHHHHHHHHH
Q 024397 84 EKQSMIKELN 93 (268)
Q Consensus 84 r~r~~~~~l~ 93 (268)
++..+.....
T Consensus 81 ~~~~l~~~w~ 90 (105)
T PF00435_consen 81 KLEELNQRWE 90 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 301
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=23.96 E-value=17 Score=30.00 Aligned_cols=16 Identities=19% Similarity=0.573 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhhccC
Q 024397 224 IVCGVIAIIVVKVVNP 239 (268)
Q Consensus 224 i~i~iI~~i~~k~~~~ 239 (268)
|+++++++||+...++
T Consensus 62 ill~il~lvf~~c~r~ 77 (154)
T PF04478_consen 62 ILLGILALVFIFCIRR 77 (154)
T ss_pred HHHHHHHhheeEEEec
Confidence 3333444444444443
No 302
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=23.90 E-value=98 Score=25.24 Aligned_cols=8 Identities=38% Similarity=0.372 Sum_probs=4.6
Q ss_pred hhhhccCC
Q 024397 110 KVELFDMG 117 (268)
Q Consensus 110 R~~L~~~~ 117 (268)
...||...
T Consensus 70 k~~LF~~~ 77 (145)
T PF10661_consen 70 KNSLFTNK 77 (145)
T ss_pred HHHhCcCc
Confidence 45677544
No 303
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=23.90 E-value=26 Score=28.71 Aligned_cols=42 Identities=7% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCCCcccccc
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVVNPNNKDIRDIPGLAPPAPARRL 259 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
+++|+.=++++++.+++++.++++..+.....+ ..|..++||
T Consensus 102 ~~lW~~P~~~l~~g~~~~~~~~rr~~~~~~~~~--ls~~e~~rl 143 (148)
T PF03918_consen 102 WLLWLGPFLLLLLGGALLFRRLRRWRRRAAQEE--LSEEERRRL 143 (148)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC--CCHHHHHHH
Confidence 566665455544555556666655433332222 333445554
No 304
>PHA02642 C-type lectin-like protein; Provisional
Probab=23.80 E-value=80 Score=27.60 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhcc
Q 024397 225 VCGVIAIIVVKVVN 238 (268)
Q Consensus 225 ~i~iI~~i~~k~~~ 238 (268)
.+.+|.++|...++
T Consensus 62 ~~~~~~l~~~~~~~ 75 (216)
T PHA02642 62 TINLVPIIILMAFK 75 (216)
T ss_pred HHHHHHHHHHHHhc
Confidence 34444444444454
No 305
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=23.78 E-value=1.1e+02 Score=26.32 Aligned_cols=8 Identities=0% Similarity=0.135 Sum_probs=3.3
Q ss_pred hhchHHHH
Q 024397 212 ATDKCIML 219 (268)
Q Consensus 212 ~~dK~il~ 219 (268)
+.|-+.++
T Consensus 45 ~~~~~~~i 52 (205)
T PRK06231 45 FPNFWVFI 52 (205)
T ss_pred cCcHHHHH
Confidence 44444333
No 306
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.76 E-value=2.7e+02 Score=19.99 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhc-cCCchHHHHHHHHHHHHHHHHHHHH
Q 024397 11 LEQIHGEIRDNFRALSNGFQKLDK-IKDSNRQTKQLEELTGRMRECKRLI 59 (268)
Q Consensus 11 ~~~ye~ei~~~~~~l~~~~~~l~~-~~~~~~r~~~i~~~~~~l~ea~~ll 59 (268)
|+..=.++..++..|+++=-.|+. +...++-.+.++.|...|+.|+.-|
T Consensus 6 fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~~L~~ae~kv 55 (75)
T PRK14066 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEAERRV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666554222222 1112333334555555555555433
No 307
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.74 E-value=4.8e+02 Score=22.56 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 55 CKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYM 103 (268)
Q Consensus 55 a~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r~~~~~l~~~~~l~k~~~ 103 (268)
++.++++-+.|+... +.+.+|..=..+++..+.. |.++.++..
T Consensus 94 a~ALF~EWe~EL~~Y---~~~sLR~~S~~kL~~tr~~---Y~~L~~aM~ 136 (201)
T PF11172_consen 94 ADALFDEWEQELDQY---SNASLRRASEQKLAETRRR---YAQLIKAMR 136 (201)
T ss_pred HHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 334577777777766 3456665444444333332 444555554
No 308
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.61 E-value=2.9e+02 Score=20.13 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcc-CCchHHHHHHHHHHHHHHHHHHHHH
Q 024397 10 QLEQIHGEIRDNFRALSNGFQKLDKI-KDSNRQTKQLEELTGRMRECKRLIK 60 (268)
Q Consensus 10 ~~~~ye~ei~~~~~~l~~~~~~l~~~-~~~~~r~~~i~~~~~~l~ea~~ll~ 60 (268)
-|+..=+++..++..|+++=-.|+.. .-..+-...++.|+..|+.|+.-|.
T Consensus 8 sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae~kI~ 59 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEIR 59 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666766665553333321 1122333345555555555554333
No 309
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=23.59 E-value=94 Score=22.29 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=10.9
Q ss_pred HHHHHHHhhccCCCCcc
Q 024397 228 VIAIIVVKVVNPNNKDI 244 (268)
Q Consensus 228 iI~~i~~k~~~~~~~~~ 244 (268)
.++.+.|...++++|..
T Consensus 24 ~~~wi~~Ra~~~~DKT~ 40 (72)
T PF13268_consen 24 SGIWILWRALRKKDKTA 40 (72)
T ss_pred HHHHHHHHHHHcCCCcH
Confidence 34667777777767654
No 310
>PF12354 Internalin_N: Bacterial adhesion/invasion protein N terminal; PDB: 2OMT_A 1H6U_A 3RFS_A 3RFJ_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=23.50 E-value=34 Score=23.35 Aligned_cols=8 Identities=38% Similarity=0.883 Sum_probs=2.9
Q ss_pred CCCCCCcc
Q 024397 248 PGLAPPAP 255 (268)
Q Consensus 248 ~~~~~~~~ 255 (268)
.+-++|+|
T Consensus 34 ~~i~~P~p 41 (57)
T PF12354_consen 34 ASIPQPAP 41 (57)
T ss_dssp SS-SS-EE
T ss_pred cccCCCCC
Confidence 44455553
No 311
>COG3116 FtsL Cell division protein [Cell division and chromosome partitioning]
Probab=23.24 E-value=1e+02 Score=23.78 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=11.8
Q ss_pred hchHHHHHHHHHHHHHHHHHH
Q 024397 213 TDKCIMLFLFLIVCGVIAIIV 233 (268)
Q Consensus 213 ~dK~il~~iili~i~iI~~i~ 233 (268)
.+|+.+++.++++++.+++||
T Consensus 20 ~~kl~l~LLi~ivlsAi~vv~ 40 (105)
T COG3116 20 SGKLPLLLLIAIVLSAIGVVY 40 (105)
T ss_pred cCcHHHHHHHHHHHHHHHHHH
Confidence 456666665555555554443
No 312
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.21 E-value=1.2e+02 Score=22.04 Aligned_cols=9 Identities=0% Similarity=-0.241 Sum_probs=4.4
Q ss_pred HHHhhccCC
Q 024397 232 IVVKVVNPN 240 (268)
Q Consensus 232 i~~k~~~~~ 240 (268)
-+|-+++..
T Consensus 19 PiWL~LHY~ 27 (75)
T PRK09458 19 PIWLWLHYR 27 (75)
T ss_pred HHHHHHhhc
Confidence 445555543
No 313
>PF15444 TMEM247: Transmembrane protein 247
Probab=23.15 E-value=86 Score=26.68 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=10.8
Q ss_pred hchHHHHHHHHHHHHHH
Q 024397 213 TDKCIMLFLFLIVCGVI 229 (268)
Q Consensus 213 ~dK~il~~iili~i~iI 229 (268)
+|.+.|++.++|+|.||
T Consensus 170 qnqfamflycfifihii 186 (218)
T PF15444_consen 170 QNQFAMFLYCFIFIHII 186 (218)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 55666666666666665
No 314
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=23.10 E-value=3.4e+02 Score=20.60 Aligned_cols=22 Identities=0% Similarity=0.025 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 024397 10 QLEQIHGEIRDNFRALSNGFQK 31 (268)
Q Consensus 10 ~~~~ye~ei~~~~~~l~~~~~~ 31 (268)
.+.++...+.-.++-+.+...+
T Consensus 3 f~~~l~~~v~if~nRmksns~R 24 (96)
T PF12210_consen 3 FCNTLRSSVEIFVNRMKSNSSR 24 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHhc
Confidence 3455555555555555555444
No 315
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=23.10 E-value=2.1e+02 Score=23.54 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=9.7
Q ss_pred HHHhhhchHHHHHHHH
Q 024397 208 GRQVATDKCIMLFLFL 223 (268)
Q Consensus 208 ~rr~~~dK~il~~iil 223 (268)
-..-+.||+|+.+.++
T Consensus 113 p~~gY~nklilaisvt 128 (154)
T PF14914_consen 113 PGYGYNNKLILAISVT 128 (154)
T ss_pred ccccccchhHHHHHHH
Confidence 3334677888776444
No 316
>PRK10913 dipeptide transporter; Provisional
Probab=22.93 E-value=1.9e+02 Score=26.25 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=9.7
Q ss_pred HHHHHHhhhchHHHHHHH
Q 024397 205 KEIGRQVATDKCIMLFLF 222 (268)
Q Consensus 205 ~~m~rr~~~dK~il~~ii 222 (268)
+.+.++..++|..++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (300)
T PRK10913 20 QEFWHYFKRNKGAVVGLV 37 (300)
T ss_pred HHHHHHHhhChHHHHHHH
Confidence 334456667776554433
No 317
>COG4420 Predicted membrane protein [Function unknown]
Probab=22.84 E-value=2.7e+02 Score=23.83 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHH
Q 024397 165 TIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLF 220 (268)
Q Consensus 165 te~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~ 220 (268)
...+-..+.+.+..+.....+++....+-..--++ +..+|++=..+..+++.+
T Consensus 12 ~~~~~~~~~~~l~~~~~i~~~~~e~~~~~~t~gdR---~ad~ia~f~Gsw~fil~~ 64 (191)
T COG4420 12 LSTVPARLFELLRENTPISSDRREEFEDGETFGDR---VADKIARFGGSWAFILTF 64 (191)
T ss_pred hhhhHHHHhHHHHhcchhhcchHHHHhcccchhhh---HHHHHHHHcCChHHHHHH
Confidence 33444455555555555555555554443333323 333444433333344433
No 318
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=22.70 E-value=1.8e+02 Score=17.15 Aligned_cols=18 Identities=11% Similarity=0.423 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhccCC
Q 024397 223 LIVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 223 li~i~iI~~i~~k~~~~~ 240 (268)
++.+++++|.++-+++|.
T Consensus 10 ~va~~L~vYL~~ALlrPE 27 (29)
T PRK14759 10 AVSLGLLIYLTYALLRPE 27 (29)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 344456677777777773
No 319
>PRK10772 cell division protein FtsL; Provisional
Probab=22.66 E-value=2.1e+02 Score=22.24 Aligned_cols=22 Identities=5% Similarity=0.312 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHh
Q 024397 214 DKCIMLFLFLIVCGVIAIIVVK 235 (268)
Q Consensus 214 dK~il~~iili~i~iI~~i~~k 235 (268)
+|+.+++++++++..+++|+..
T Consensus 23 ~kl~l~Ll~~vv~SAl~VV~~~ 44 (108)
T PRK10772 23 GKLPLCLFIAVIVSAVTVVTTA 44 (108)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 6777766666665555555543
No 320
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=22.62 E-value=4.3e+02 Score=21.57 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=2.2
Q ss_pred HHHHHH
Q 024397 204 VKEIGR 209 (268)
Q Consensus 204 l~~m~r 209 (268)
++...+
T Consensus 111 ~~~~~~ 116 (144)
T PF11657_consen 111 VNDLVR 116 (144)
T ss_pred HHHHHH
Confidence 333333
No 321
>PF15206 FAM209: FAM209 family
Probab=22.54 E-value=59 Score=26.43 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=14.3
Q ss_pred HHHHHHHHhhccCCCC-ccCCCC
Q 024397 227 GVIAIIVVKVVNPNNK-DIRDIP 248 (268)
Q Consensus 227 ~iI~~i~~k~~~~~~~-~~~~~~ 248 (268)
++++|+++||-+.++| +.|.+|
T Consensus 47 vv~lyvilKf~g~~~K~keq~p~ 69 (150)
T PF15206_consen 47 VVVLYVILKFRGDSEKNKEQSPP 69 (150)
T ss_pred HHHHHheeEeccCcccccccCCC
Confidence 3567899999887643 344444
No 322
>PHA00739 V3 structural protein VP3
Probab=22.27 E-value=82 Score=23.28 Aligned_cols=15 Identities=27% Similarity=0.751 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHH
Q 024397 215 KCIMLFLFLIVCGVI 229 (268)
Q Consensus 215 K~il~~iili~i~iI 229 (268)
|.|++++|+++++++
T Consensus 6 k~iifL~iFi~iGiv 20 (92)
T PHA00739 6 KQIIFLFIFILIGIV 20 (92)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666667776666
No 323
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.70 E-value=1.1e+03 Score=25.81 Aligned_cols=190 Identities=11% Similarity=0.152 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhccCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHH
Q 024397 8 SPQLEQIHGEIRDNFRALSNGFQKLDKIKDS--NRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEK 85 (268)
Q Consensus 8 s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~--~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~ 85 (268)
+..+++++++|+++.......++..-+.... ......+...+..+.-....|..-+..+..+.+ +-...+..+..+.
T Consensus 271 ~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~-~i~e~~~~l~~k~ 349 (1174)
T KOG0933|consen 271 DKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRK-NIEEDRKKLKEKE 349 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-hHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc--chhhhccCCCCCCCCCcc-hhhhhhccccHHHHHHhchhhhHHHHHHHHHHHHHH
Q 024397 86 QSMIKELNSYVALRKTYMNSLGN--KKVELFDMGAGVSEPTAD-ENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVV 162 (268)
Q Consensus 86 r~~~~~l~~~~~l~k~~~~~~~~--~R~~L~~~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~~~~~~ 162 (268)
..+......|..++.++...... ..+.++.+-....++..+ +-.+...-.+....+....-......-.++.++..+
T Consensus 350 ~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~el 429 (1174)
T KOG0933|consen 350 KAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKEL 429 (1174)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHH
Q 024397 163 EQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIK 198 (268)
Q Consensus 163 ~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~ 198 (268)
...+.--.....+=..-.+-++....+++.+...+.
T Consensus 430 k~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~ 465 (1174)
T KOG0933|consen 430 KLREGELATASAEYVKDIEELDALQNEVEKLKKRLQ 465 (1174)
T ss_pred HhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 324
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=21.67 E-value=1.1e+02 Score=20.81 Aligned_cols=8 Identities=0% Similarity=0.085 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 024397 224 IVCGVIAI 231 (268)
Q Consensus 224 i~i~iI~~ 231 (268)
++++|+++
T Consensus 9 i~lvv~LY 16 (56)
T TIGR02736 9 LLLVIFLY 16 (56)
T ss_pred HHHHHHHH
Confidence 33334433
No 325
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=21.65 E-value=1.5e+02 Score=18.22 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHH
Q 024397 215 KCIMLFLFLIVCGVI 229 (268)
Q Consensus 215 K~il~~iili~i~iI 229 (268)
|+.++++++.+++.+
T Consensus 11 kiT~v~v~lM~i~tv 25 (35)
T PF13253_consen 11 KITMVVVWLMLILTV 25 (35)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555444444444
No 326
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=21.52 E-value=26 Score=33.21 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHhhccCCCCccC
Q 024397 223 LIVCGVIAII-VVKVVNPNNKDIR 245 (268)
Q Consensus 223 li~i~iI~~i-~~k~~~~~~~~~~ 245 (268)
|+|++|+.+| .|.-.|+..|+++
T Consensus 19 LlVVGi~Cvv~aYCKTKKQRkklh 42 (404)
T PF02158_consen 19 LLVVGIVCVVDAYCKTKKQRKKLH 42 (404)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455666555 4444444344443
No 327
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=21.48 E-value=1.3e+02 Score=21.07 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 024397 217 IMLFLFLIVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 217 il~~iili~i~iI~~i~~k~~~~~ 240 (268)
.+|.||+|=+.|+++|.--|+-|+
T Consensus 20 tLW~IIliKLfImF~vLK~FfFp~ 43 (64)
T PF14899_consen 20 TLWLIILIKLFIMFAVLKLFFFPN 43 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcc
Confidence 346655555445554444455564
No 328
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=21.41 E-value=1.6e+02 Score=27.56 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=18.4
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhccC
Q 024397 204 VKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 204 l~~m~rr~~~dK~il~~iili~i~iI~~i~~k~~~~ 239 (268)
|..+.+-....|+++++ +.+++++++++|..+.+|
T Consensus 12 l~~L~~~Lw~~k~~Ii~-~t~~~~~~~~~~s~~~~~ 46 (342)
T PRK11638 12 IRGLCRTLWAGKLWIIG-MALLFALIALGYSFLARQ 46 (342)
T ss_pred HHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHhcCCc
Confidence 34444444555555444 444445666666655554
No 329
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=21.29 E-value=3.3e+02 Score=19.72 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQT-ATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI 207 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~i-l~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m 207 (268)
+..-...+++...-+.+..++.... .-++..-...|.+++.+|..++..+...++-+..+
T Consensus 30 Q~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 30 QEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555555533333 33444577888888888888888777777655544
No 330
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=20.99 E-value=8e+02 Score=24.37 Aligned_cols=53 Identities=8% Similarity=0.145 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 45 LEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTY 102 (268)
Q Consensus 45 i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r~~~~~l~~~~~l~k~~ 102 (268)
+.++++.|..|+.-...+|..+..+ ....+.+++. ++....+++.++...+.+
T Consensus 51 ~~~~~~~L~Ka~tk~~~ldvklkha----~~~vda~ik~-rr~ae~d~~~~E~~i~~i 103 (604)
T KOG3564|consen 51 LGKYKDLLAKAETKRSALDVKLKHA----RNQVDAEIKR-RRRAEADCEKLETQIQLI 103 (604)
T ss_pred HHHHHHHHHHHHHhhhhccchHHHH----HHHHHHHHHH-HHHHhhhHHHHHHHHHHH
Confidence 4444444555555444444444433 1133444443 333455555544444333
No 331
>PF11031 Phage_holin_T: Bacteriophage T holin; InterPro: IPR020982 One mechanism by which bacteriophages effect host lysis begins with the accumulation of a holin in the host membrane and an endolysin in the host cytoplasm during late gene expression. At an allele-specific time, the holin disrupts the membrane, thus allowing the endolysin to enter the periplasm and degrade the cell wall peptidoglycan. This entry represents a specific holin, known as T, which has an unusual C-terminal periplasmic domain thought to be involved in the transduction of environmental information for the real-time control of lysis timing [].
Probab=20.89 E-value=1.1e+02 Score=26.49 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHH-HHHHHh
Q 024397 202 QLVKEIGRQVATDKCIMLFLFLIVCGVI-AIIVVK 235 (268)
Q Consensus 202 ~~l~~m~rr~~~dK~il~~iili~i~iI-~~i~~k 235 (268)
.+|..+.+-..+.|.++.=+++|+++.| +++++|
T Consensus 14 ~lLdrlfkd~~tgk~L~~Rv~~iivlfim~l~wyk 48 (216)
T PF11031_consen 14 GLLDRLFKDNKTGKVLFSRVIVIIVLFIMALIWYK 48 (216)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHhheeec
Confidence 4566677767778888775555444444 555554
No 332
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.65 E-value=3.5e+02 Score=19.79 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 024397 14 IHGEIRDNFRALSNGFQK 31 (268)
Q Consensus 14 ye~ei~~~~~~l~~~~~~ 31 (268)
..+++..+..+++..++.
T Consensus 3 l~~~l~~l~~d~~~l~~~ 20 (94)
T PF05957_consen 3 LKAELEQLRADLEDLARS 20 (94)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445554444444443
No 333
>PRK15082 glutathione ABC transporter permease GsiD; Provisional
Probab=20.64 E-value=2.7e+02 Score=25.25 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=7.6
Q ss_pred HHHHHhhhchHHHHH
Q 024397 206 EIGRQVATDKCIMLF 220 (268)
Q Consensus 206 ~m~rr~~~dK~il~~ 220 (268)
.+.++...++..++.
T Consensus 27 ~~~~~~~~~~~~~~~ 41 (301)
T PRK15082 27 EFWRRFRRQHVALVA 41 (301)
T ss_pred HHHHHHhhChHHHHH
Confidence 344455556654443
No 334
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=20.38 E-value=6.7e+02 Score=24.96 Aligned_cols=11 Identities=9% Similarity=0.286 Sum_probs=4.1
Q ss_pred HHHHHHHHhhh
Q 024397 19 RDNFRALSNGF 29 (268)
Q Consensus 19 ~~~~~~l~~~~ 29 (268)
..-+.+|...|
T Consensus 357 ~~~lkDLd~~~ 367 (531)
T PF15450_consen 357 MRQLKDLDDHI 367 (531)
T ss_pred HHHHHHHHHHH
Confidence 33333443333
No 335
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.35 E-value=8.8e+02 Score=24.32 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhc
Q 024397 10 QLEQIHGEIRDNFRALSNGFQKLDK 34 (268)
Q Consensus 10 ~~~~ye~ei~~~~~~l~~~~~~l~~ 34 (268)
..+..+..++..-......+..+++
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp~ 189 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLPN 189 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445555555555555555555553
No 336
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.32 E-value=1.2e+02 Score=23.18 Aligned_cols=7 Identities=0% Similarity=-0.325 Sum_probs=2.7
Q ss_pred HHhhccC
Q 024397 233 VVKVVNP 239 (268)
Q Consensus 233 ~~k~~~~ 239 (268)
|.-|++.
T Consensus 17 y~l~~g~ 23 (105)
T PRK00888 17 YSLWFGK 23 (105)
T ss_pred HHHhccC
Confidence 3334433
No 337
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=20.29 E-value=3.7e+02 Score=19.95 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=33.8
Q ss_pred HHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHH---HHhhhchHHHHHHHH
Q 024397 176 LKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG---RQVATDKCIMLFLFL 223 (268)
Q Consensus 176 L~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~---rr~~~dK~il~~iil 223 (268)
|..-++.+..+..++......+.....-++.+. |+..++++|--+.++
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi~rGa~l 53 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLIERGAIL 53 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344455566667777777777777777777776 888888888777654
No 338
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=20.25 E-value=1.8e+02 Score=27.00 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=15.8
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhccCC
Q 024397 211 VATDKCIMLFLFLIVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 211 ~~~dK~il~~iili~i~iI~~i~~k~~~~~ 240 (268)
+...|+++++ +++++++++++|..+.+|.
T Consensus 27 L~r~k~~Ii~-~~~~~~~lg~~Ya~~a~p~ 55 (325)
T PRK15471 27 LWRGKMTIII-SVIVAIALAVGYLAVAKEK 55 (325)
T ss_pred HHHhhHHHHH-HHHHHHHHHHHHHHhCCce
Confidence 3344554443 3444456676777676664
No 339
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=20.06 E-value=53 Score=31.29 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhc
Q 024397 221 LFLIVCGVIAIIVVKVV 237 (268)
Q Consensus 221 iili~i~iI~~i~~k~~ 237 (268)
+|++|.++|+++.|.|+
T Consensus 376 vvvvVgglvGfLcWwf~ 392 (397)
T PF03302_consen 376 VVVVVGGLVGFLCWWFI 392 (397)
T ss_pred hHHHHHHHHHHHhhhee
Confidence 34455567755544444
No 340
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.03 E-value=2.8e+02 Score=19.16 Aligned_cols=11 Identities=0% Similarity=0.235 Sum_probs=4.7
Q ss_pred HHHHHHHHHHh
Q 024397 201 SQLVKEIGRQV 211 (268)
Q Consensus 201 ~~~l~~m~rr~ 211 (268)
+.+|++=.+|.
T Consensus 30 ~eil~ker~R~ 40 (64)
T COG4068 30 GEILNKERKRQ 40 (64)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
Done!