Query 024397
Match_columns 268
No_of_seqs 155 out of 657
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 07:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_C Vesicle transport throu 99.7 1.1E-17 3.6E-22 122.7 9.6 80 136-215 2-81 (81)
2 2qyw_A Vesicle transport throu 99.7 5.5E-17 1.9E-21 124.1 11.3 92 1-96 7-98 (102)
3 1vcs_A Vesicle transport throu 99.6 3E-15 1E-19 114.4 8.5 91 6-101 2-92 (102)
4 3onj_A T-snare VTI1; helix, HA 99.6 3.9E-14 1.3E-18 107.3 12.1 92 9-103 1-93 (97)
5 1gl2_C VTI1B, vesicle transpor 99.5 5.6E-14 1.9E-18 98.6 8.0 64 146-209 2-65 (65)
6 1n7s_C SNAP-25A; neuronal snar 99.4 3.1E-12 1.1E-16 93.0 10.6 74 136-209 6-79 (79)
7 1nhl_A Synaptosomal-associated 99.0 1.2E-09 4.1E-14 73.6 6.8 52 156-207 3-54 (54)
8 1l4a_C S-SNAP25 fusion protein 98.8 6.6E-09 2.2E-13 75.9 6.6 74 135-208 9-82 (83)
9 3b5n_C Protein transport prote 98.7 2E-07 6.7E-12 65.9 10.4 63 147-209 6-68 (70)
10 3hd7_B Syntaxin-1A; membrane p 98.5 3.2E-06 1.1E-10 64.9 13.5 83 148-230 16-101 (109)
11 2nps_D Syntaxin-6; vesicle fus 98.4 8.6E-07 2.9E-11 64.6 7.9 74 141-214 7-80 (82)
12 1gl2_D Syntaxin 8, vesicle tra 98.3 2.5E-06 8.6E-11 59.3 7.4 63 147-209 3-65 (65)
13 1sfc_D Protein (SNAP-25B), pro 98.1 1.4E-05 4.8E-10 58.8 8.8 64 147-210 23-86 (87)
14 1n7s_D SNAP-25A; neuronal snar 98.1 2E-05 6.8E-10 54.8 8.3 61 148-208 5-65 (66)
15 3b5n_D Protein transport prote 98.0 4.1E-05 1.4E-09 53.0 8.7 59 148-206 5-63 (64)
16 1l4a_D S-SNAP25 fusion protein 97.9 2.6E-05 8.8E-10 57.4 6.9 62 148-209 25-86 (87)
17 3hd7_A Vesicle-associated memb 97.6 0.002 7E-08 47.5 12.6 63 152-214 4-66 (91)
18 4dnd_A Syntaxin-10, SYN10; str 96.3 0.071 2.4E-06 41.7 11.5 92 10-102 28-128 (130)
19 2kog_A Vesicle-associated memb 95.9 0.0012 4.1E-08 51.2 -0.2 69 152-220 32-100 (119)
20 1jth_B Syntaxin 1A; coiled-coi 95.8 0.13 4.5E-06 36.3 10.2 66 149-214 6-71 (77)
21 1dn1_B Syntaxin 1A, syntaxin b 95.0 0.41 1.4E-05 41.7 13.1 58 148-205 195-252 (267)
22 3vkg_A Dynein heavy chain, cyt 94.9 6.3 0.00022 45.5 24.9 73 137-209 2012-2084(3245)
23 2nps_B Syntaxin 13, vesicle-as 94.8 0.41 1.4E-05 33.1 9.9 60 152-211 5-64 (71)
24 3hd7_A Vesicle-associated memb 94.1 1.1 3.9E-05 32.5 12.2 70 148-223 7-79 (91)
25 1n7s_B Syntaxin 1A; neuronal s 94.1 0.69 2.4E-05 31.6 9.9 59 148-206 7-65 (68)
26 3b5n_B Protein SSO1; snare com 94.1 0.71 2.4E-05 31.7 9.9 61 149-209 6-66 (69)
27 1gl2_B Syntaxin 7; membrane pr 94.0 0.57 1.9E-05 31.8 9.1 55 152-206 8-62 (65)
28 1sfc_B Protein (syntaxin 1A), 92.0 1.8 6.3E-05 30.7 9.8 62 148-209 16-77 (83)
29 3hd7_B Syntaxin-1A; membrane p 86.1 8.7 0.0003 28.6 13.2 81 150-231 25-105 (109)
30 2xhe_B Syntaxin1; exocytosis, 85.3 17 0.00059 31.3 13.2 60 149-208 213-272 (279)
31 2c5k_T Syntaxin TLG1, T-snare 84.6 9.6 0.00033 27.7 9.5 87 9-103 6-92 (95)
32 3nmd_A CGMP dependent protein 76.3 16 0.00053 25.3 7.5 9 1-9 12-20 (72)
33 3c98_B Syntaxin-1A; protein co 73.3 3.5 0.00012 34.8 4.5 60 146-205 205-264 (279)
34 2l8s_A Integrin alpha-1; trans 69.6 8.2 0.00028 25.2 4.5 18 223-240 20-39 (54)
35 1sfc_A VAMP 2, protein (synapt 68.5 31 0.0011 25.0 9.0 60 152-211 29-88 (96)
36 2kog_A Vesicle-associated memb 68.0 6.1 0.00021 30.1 4.3 76 148-229 35-113 (119)
37 3p8c_F ABL interactor 2; actin 67.2 46 0.0016 26.5 11.2 79 157-255 58-136 (159)
38 2knc_A Integrin alpha-IIB; tra 64.3 12 0.0004 24.5 4.4 17 223-239 23-41 (54)
39 3etw_A Adhesin A; antiparallel 63.3 47 0.0016 25.2 11.1 89 6-102 6-94 (119)
40 3b5n_A Synaptobrevin homolog 1 60.2 33 0.0011 22.5 9.7 57 153-209 2-58 (61)
41 3j1r_A Archaeal adhesion filam 59.6 12 0.0004 20.5 3.2 16 222-237 9-25 (26)
42 3f6n_A Virion-associated prote 59.0 12 0.00043 28.4 4.4 55 1-56 1-61 (129)
43 2jp3_A FXYD domain-containing 56.8 5 0.00017 27.3 1.7 14 240-253 45-58 (67)
44 4aj5_A SKA1, spindle and kinet 56.6 52 0.0018 23.6 9.8 59 9-68 4-62 (91)
45 1n7s_A Vesicle-associated memb 55.8 41 0.0014 22.1 9.8 58 152-209 3-60 (63)
46 2k1a_A Integrin alpha-IIB; sin 54.1 20 0.00067 22.1 4.0 17 223-239 21-39 (42)
47 2knc_B Integrin beta-3; transm 50.4 14 0.00048 25.9 3.3 15 223-237 21-35 (79)
48 1q90_R Cytochrome B6-F complex 48.5 31 0.0011 21.9 4.4 33 206-239 8-40 (49)
49 2nps_A VAMP-4, vesicle-associa 47.9 63 0.0021 22.0 7.4 57 155-211 10-66 (74)
50 1pi7_A VPU protein, U ORF prot 47.3 19 0.00064 21.5 3.0 14 223-236 11-24 (36)
51 2ic6_A Nucleocapsid protein; h 46.7 72 0.0024 22.3 6.4 19 40-58 49-67 (78)
52 1urq_A M-tomosyn isoform; tran 46.0 63 0.0022 21.5 8.2 56 154-209 5-60 (63)
53 1t3j_A Mitofusin 1; coiled coi 45.2 86 0.0029 22.8 8.1 15 81-95 76-90 (96)
54 1fjk_A Cardiac phospholamban; 42.9 38 0.0013 21.1 4.0 8 194-201 9-16 (52)
55 4afl_A P29ING4, inhibitor of g 42.7 92 0.0031 22.4 7.8 50 9-58 25-77 (104)
56 2jpw_A Troponin I, cardiac mus 42.6 5.5 0.00019 22.7 0.1 17 242-258 6-22 (32)
57 1l4a_A Synaptobrevin; snare, s 42.4 36 0.0012 23.6 4.5 57 154-210 16-72 (80)
58 2k9j_B Integrin beta-3; transm 41.5 29 0.00098 21.4 3.3 15 223-237 20-34 (43)
59 2k48_A Nucleoprotein; viral pr 41.0 58 0.002 24.0 5.4 23 9-31 35-57 (107)
60 1xaw_A Occludin; coiled-coil, 40.9 58 0.002 25.4 5.8 30 74-104 108-137 (140)
61 2ic9_A Nucleocapsid protein; h 40.4 1E+02 0.0035 22.3 6.8 11 11-21 7-17 (96)
62 3ghg_A Fibrinogen alpha chain; 40.1 1.4E+02 0.005 28.3 9.3 27 8-34 52-78 (562)
63 3trt_A Vimentin; cytoskeleton, 36.0 99 0.0034 20.8 7.3 25 7-31 7-31 (77)
64 1ic2_A Tropomyosin alpha chain 35.0 1.1E+02 0.0038 21.1 10.0 64 147-210 14-77 (81)
65 2jee_A YIIU; FTSZ, septum, coi 34.3 1.2E+02 0.0041 21.3 10.6 20 7-26 3-23 (81)
66 2avr_X Adhesion A; antiparalle 31.4 1.7E+02 0.0057 22.1 11.4 83 7-100 7-92 (119)
67 1gl2_A Endobrevin; membrane pr 31.1 1.1E+02 0.0039 20.1 7.2 45 152-196 8-52 (65)
68 2ks1_B Epidermal growth factor 28.9 56 0.0019 20.2 3.2 11 228-238 26-36 (44)
69 1afo_A Glycophorin A; integral 28.3 72 0.0025 19.2 3.4 12 225-236 23-34 (40)
70 2zxe_G FXYD10, phospholemman-l 27.9 34 0.0012 23.6 2.2 23 230-252 36-59 (74)
71 3gwk_C SAG1039, putative uncha 27.7 1.5E+02 0.0051 20.4 8.5 59 8-67 17-79 (98)
72 1vp7_A Exodeoxyribonuclease VI 26.6 1.4E+02 0.0049 21.7 5.6 52 11-62 32-84 (100)
73 1gd2_E Transcription factor PA 25.0 1.6E+02 0.0056 19.9 5.6 24 41-64 27-50 (70)
74 2dfs_A Myosin-5A; myosin-V, in 24.3 2.9E+02 0.01 28.5 9.4 96 7-103 947-1043(1080)
75 1d7m_A Cortexillin I; coiled-c 23.9 2E+02 0.0069 20.5 10.0 42 17-60 22-63 (101)
76 2w1k_A Putative sortase; pilus 23.8 17 0.00057 31.3 0.0 25 216-240 225-249 (252)
77 3vou_A ION transport 2 domain 23.7 1.7E+02 0.0058 22.2 6.0 39 197-235 8-46 (148)
78 1rh5_B Preprotein translocase 23.6 29 0.00099 24.1 1.2 14 191-204 10-23 (74)
79 2kwh_A RAla-binding protein 1; 23.0 1.6E+02 0.0055 19.1 5.6 43 170-212 6-54 (56)
80 4aq5_E Acetylcholine receptor 22.7 73 0.0025 29.8 4.2 22 215-236 284-306 (488)
81 1m1j_B Fibrinogen beta chain; 22.5 4.7E+02 0.016 24.3 11.4 27 8-34 88-114 (464)
82 1k1f_A Breakpoint cluster regi 22.1 1.1E+02 0.0038 20.6 3.8 26 43-68 26-51 (72)
83 3qb5_K Translin-associated pro 22.1 3.8E+02 0.013 23.1 9.7 82 7-91 35-130 (290)
84 1dpj_B IA3, proteinase inhibit 22.0 80 0.0027 17.6 2.6 25 7-31 7-31 (33)
85 2oez_A UPF0289 protein VP2528; 21.4 1.4E+02 0.0049 25.4 5.4 55 166-220 58-122 (247)
86 1svf_B Protein (fusion glycopr 20.9 91 0.0031 18.5 2.9 23 183-205 14-36 (38)
87 1gs9_A Apolipoprotein E, APOE4 20.9 3.1E+02 0.011 21.5 14.1 91 12-102 58-159 (165)
88 1lrz_A FEMA, factor essential 20.6 3.2E+02 0.011 24.5 8.1 53 10-62 248-300 (426)
89 2lat_A Dolichyl-diphosphooligo 20.5 73 0.0025 19.0 2.4 10 229-238 20-29 (37)
90 2pjw_V Vacuolar protein sortin 20.3 1.2E+02 0.0043 21.6 4.1 46 16-61 33-79 (91)
91 1t3j_A Mitofusin 1; coiled coi 20.2 2.5E+02 0.0086 20.3 7.3 28 7-34 34-61 (96)
92 1uk5_A BAG-family molecular ch 20.1 1.9E+02 0.0065 21.5 5.2 14 79-92 88-101 (111)
No 1
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.74 E-value=1.1e-17 Score=122.75 Aligned_cols=80 Identities=11% Similarity=0.268 Sum_probs=75.9
Q ss_pred cHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhch
Q 024397 136 SNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDK 215 (268)
Q Consensus 136 ~~r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK 215 (268)
++|+.++.+++.+++++++|.++.+++.|||+||.+|+++|..|+|+|.++++.|+++|+++++|.++|+.|.||+++||
T Consensus 2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=99.71 E-value=5.5e-17 Score=124.09 Aligned_cols=92 Identities=17% Similarity=0.284 Sum_probs=84.8
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHH
Q 024397 1 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQ 80 (268)
Q Consensus 1 ~~~~~~~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~ 80 (268)
|++-..||++|++||++|+.++.+|+.++..++....|++|++.+++++..+++|+++|++|++|++++ |+.+|..
T Consensus 7 ~~~~~~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~----p~s~R~~ 82 (102)
T 2qyw_A 7 MAASAASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA----PLTFRNP 82 (102)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHH
Confidence 667778999999999999999999999999998755779999999999999999999999999999997 5789999
Q ss_pred HHHHHHHHHHHHHHHH
Q 024397 81 LNDEKQSMIKELNSYV 96 (268)
Q Consensus 81 ~~~r~r~~~~~l~~~~ 96 (268)
|++|++.|+++|+.++
T Consensus 83 ~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 83 MMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998744
No 3
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=99.59 E-value=3e-15 Score=114.44 Aligned_cols=91 Identities=12% Similarity=0.263 Sum_probs=81.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHH
Q 024397 6 QMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEK 85 (268)
Q Consensus 6 ~~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~ 85 (268)
.+|++|++||++|+.++.+|..++..++.+ .|++|++.|++++..+++|+++|++|++|++++ |+.+|..|++|+
T Consensus 2 ~sSelFe~YE~df~~l~~~i~~kl~~i~~~-~geerk~~i~~ie~~l~EA~ell~qMelE~r~~----p~~~R~~~~~kl 76 (102)
T 1vcs_A 2 SSGSSGEGYEQDFAVLTAEITSKIARVPRL-PPDEKKQMVANVEKQLEEARELLEQMDLEVREI----PPQSRGMYSNRM 76 (102)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHHHHHGGGS-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTTTHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHhHHHHHHHH
Confidence 368999999999999999999999999874 789999999999999999999999999999997 557899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 024397 86 QSMIKELNSYVALRKT 101 (268)
Q Consensus 86 r~~~~~l~~~~~l~k~ 101 (268)
+.|+++|+.++...+.
T Consensus 77 r~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 77 RSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999885444333
No 4
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=99.56 E-value=3.9e-14 Score=107.30 Aligned_cols=92 Identities=10% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHH
Q 024397 9 PQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSM 88 (268)
Q Consensus 9 ~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r~~ 88 (268)
++|++||.+|+.++.+|..++..++. ..|++|++.++.++..+++|.++|++|++|++++. .|+..|+.|++|++.|
T Consensus 1 ~lF~~YE~df~~~~~~i~~~l~~~~~-~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~--~p~~~R~~~~~klr~Y 77 (97)
T 3onj_A 1 SLLISYESDFKTTLEQAKASLAEAPS-QPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSI--GDASERATYKAKLREW 77 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 58999999999999999999999987 47899999999999999999999999999999982 2568899999999999
Q ss_pred HHHHHH-HHHHHHHHH
Q 024397 89 IKELNS-YVALRKTYM 103 (268)
Q Consensus 89 ~~~l~~-~~~l~k~~~ 103 (268)
+++|+. ++...+.+.
T Consensus 78 k~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 78 KKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 999998 776666554
No 5
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.50 E-value=5.6e-14 Score=98.63 Aligned_cols=64 Identities=25% Similarity=0.419 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 146 KTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 146 ~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
+.|++++++|.++.+++.|||++|.+|+.+|..|+|+|.++++.++++++++++|.++|+.|.|
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 3588999999999999999999999999999999999999999999999999999999999976
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.39 E-value=3.1e-12 Score=93.05 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=70.7
Q ss_pred cHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 136 SNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 136 ~~r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
+.+++...++.+++++.+++.++.+++.+|+++|..|+.+|..|+|+|.++++.|+++++++++|.++|+.|.+
T Consensus 6 ~~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 6 ELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999974
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=98.98 E-value=1.2e-09 Score=73.61 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 024397 156 KRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI 207 (268)
Q Consensus 156 ~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m 207 (268)
.++.+++.+++++|..|+.+|..|+|+|.++++.++++++++++|.++|+.|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 5788999999999999999999999999999999999999999999999764
No 8
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.83 E-value=6.6e-09 Score=75.87 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=67.7
Q ss_pred ccHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 024397 135 MSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG 208 (268)
Q Consensus 135 ~~~r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~ 208 (268)
.+.+++......+.+++.++..++.+++.+++++|..|+.+|..|.|+|.+++..++.+++++++|.+.|+.|.
T Consensus 9 ~~~q~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 9 TELEEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677888888899999999999999999999999999999999999999999999999999999999887664
No 9
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.69 E-value=2e-07 Score=65.86 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 147 ~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
+.+++.++..++.+++.+++++|..++..|..|.|+|.+++..+|.++.+++.|.+.|+.+.+
T Consensus 6 ~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 6 TKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467888999999999999999999999999999999999999999999999999999998753
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=98.50 E-value=3.2e-06 Score=64.85 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHH---HHHhhhchHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI---GRQVATDKCIMLFLFLI 224 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m---~rr~~~dK~il~~iili 224 (268)
.++-.+.+.+.++.+.+..++-.+...-+..|.++|++++.+++.+..++..+.+.|+.- .|+....+|++++++++
T Consensus 16 i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i 95 (109)
T 3hd7_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVI 95 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHH
Confidence 445577888999999999999999999999999999999999999999999999888554 44444434444443333
Q ss_pred HHHHHH
Q 024397 225 VCGVIA 230 (268)
Q Consensus 225 ~i~iI~ 230 (268)
+++|++
T Consensus 96 ~~~i~~ 101 (109)
T 3hd7_B 96 LGIIIA 101 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 11
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=98.42 E-value=8.6e-07 Score=64.63 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=60.0
Q ss_pred HHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhc
Q 024397 141 IDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATD 214 (268)
Q Consensus 141 l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~d 214 (268)
++.+.+.+.++++.|+.....+....++|..|.+||..|++.|+++.++++.+++.|..+.+-+..|.++....
T Consensus 7 ~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~ 80 (82)
T 2nps_D 7 MTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR 80 (82)
T ss_dssp -----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 34455567889999999999999999999999999999999999999999999999999999999999986443
No 12
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.28 E-value=2.5e-06 Score=59.30 Aligned_cols=63 Identities=14% Similarity=0.322 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 147 ~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
++.++++.|+.....+....++|.+|.+||..|++.|+++.++++.+++.|..+.+-+..+.|
T Consensus 3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 577899999999999999999999999999999999999999999999999999988877654
No 13
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.12 E-value=1.4e-05 Score=58.78 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024397 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (268)
Q Consensus 147 ~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr 210 (268)
..+++++.|+.....+...+++|..|.+||..|++.|+++.++++.+++.|..+++-++.+.++
T Consensus 23 ~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 23 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 4678899999999999999999999999999999999999999999999999999998887653
No 14
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=98.06 E-value=2e-05 Score=54.84 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG 208 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~ 208 (268)
-+++++.|+.....+....++|..|.+||..|++.|+++.++++.+++.|..+.+-++.+.
T Consensus 5 e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 5 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999999999999999999999998887653
No 15
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=98.00 E-value=4.1e-05 Score=52.97 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~ 206 (268)
-++.++.|+....++.....+|.++..||..|+++|+++..+++.++..+..+++-|..
T Consensus 5 E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 5 ELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45789999999999999999999999999999999999999999999999999887764
No 16
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.92 E-value=2.6e-05 Score=57.37 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
.+++++.|+....++....++|.+|.+||..|++.|+++.++++.++..|..+++-++.+.+
T Consensus 25 e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 25 EDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999999999999999999999988877654
No 17
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.57 E-value=0.002 Score=47.48 Aligned_cols=63 Identities=8% Similarity=0.172 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhc
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATD 214 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~d 214 (268)
++.|...+..++|+.++=.+-.+.+-...|.|+.+.++-++..+.-..=++.=+.+.|++.-.
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwk 66 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 66 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888899999999999999998888887766666666666665444
No 18
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=96.25 E-value=0.071 Score=41.75 Aligned_cols=92 Identities=14% Similarity=0.225 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhh---HH
Q 024397 10 QLEQIHGEIRDNFRALSNGFQKLDKIKDS------NRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVN---KQ 80 (268)
Q Consensus 10 ~~~~ye~ei~~~~~~l~~~~~~l~~~~~~------~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r---~~ 80 (268)
=|-...+|++..+..+++.+.+|..+... .+-...-.++.+.+..++..|++++..|..++. .|..|+ .+
T Consensus 28 PF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~-np~kF~l~~~E 106 (130)
T 4dnd_A 28 PFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEA-NPGKFKLPAGD 106 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHCCCHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHhcCCCHHH
Confidence 58889999999999999999999765321 244556788888899999999999999998874 676764 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024397 81 LNDEKQSMIKELNSYVALRKTY 102 (268)
Q Consensus 81 ~~~r~r~~~~~l~~~~~l~k~~ 102 (268)
+..|+++....-+.+..++..+
T Consensus 107 i~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 107 LQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7777666554444455555443
No 19
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=95.91 E-value=0.0012 Score=51.21 Aligned_cols=69 Identities=9% Similarity=0.208 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHH
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLF 220 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~ 220 (268)
.+.|...+..++++..+=...++.+-+..|.|+.+.++-++....-..=++.-+.+.|++.-.++-+++
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~i 100 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMI 100 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888888888999999888888777666555555556666666554444343
No 20
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=95.77 E-value=0.13 Score=36.29 Aligned_cols=66 Identities=11% Similarity=0.110 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhc
Q 024397 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATD 214 (268)
Q Consensus 149 ~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~d 214 (268)
.+-...+.++.+.+.+..++-.+...-...|.++|++++..+..+..++..|...|..-.+.-...
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~ 71 (77)
T 1jth_B 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344667888999999999999999999999999999999999999999999999998766643333
No 21
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=95.04 E-value=0.41 Score=41.72 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVK 205 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~ 205 (268)
+.+=...+..+.+.+.+..+|-.....-...|.++|+++...|..+..++..|...|.
T Consensus 195 i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~ 252 (267)
T 1dn1_B 195 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 252 (267)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444667889999999999999999999999999999999999999988888877665
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.94 E-value=6.3 Score=45.51 Aligned_cols=73 Identities=7% Similarity=0.061 Sum_probs=56.8
Q ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 137 NQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 137 ~r~~l~~~~~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
-|+.+..+.+.+..+...|...+..+.+.++-=...-.++..-...-..+.++++.+...|.+|.++|..++-
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3555566666777778888888888877776555556667777777888899999999999999999988875
No 23
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=94.76 E-value=0.41 Score=33.12 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHh
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~ 211 (268)
...+..+.+.+.+..+|-.+...-...|.++|++++..+..+..++..+...|..-.+.-
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 64 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQ 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999999999999999999999887665543
No 24
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=94.15 E-value=1.1 Score=32.47 Aligned_cols=70 Identities=9% Similarity=0.138 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQT---ATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFL 223 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~i---l~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iil 223 (268)
+.+....+++...++.+..+--.+= ++.|...++.|........ ..|+++=+.|-.+-+.-+++++++++
T Consensus 7 l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~------~~A~~l~rkmwwkn~K~~iii~~iv~ 79 (91)
T 3hd7_A 7 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE------TSAAKLKRKYWWKNLKMMIILGVICA 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666665555443332 3445555555544443333 34555555666666665555544443
No 25
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=94.13 E-value=0.69 Score=31.65 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~ 206 (268)
+.+-...+.++.+.+.+..++-.....-...|.++|+++...+..+..++..|...|..
T Consensus 7 i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 65 (68)
T 1n7s_B 7 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446678899999999999999999999999999999999999999999999988764
No 26
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.13 E-value=0.71 Score=31.72 Aligned_cols=61 Identities=7% Similarity=0.126 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 149 ~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
.+-...+.++.+.+.+..++-.....-...|.++|+++...+..+..++..+...|..-.+
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 6 QARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446678899999999999999999999999999999999999999999999998876443
No 27
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=93.98 E-value=0.57 Score=31.85 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~ 206 (268)
...+.++.+.+.+..++-.+...-...|.++|+++...+..+..++..+.+.|..
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999999999999999999999999999999988764
No 28
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=92.03 E-value=1.8 Score=30.69 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
+.+-...+..+.+.+.+..++-.+...-...|.++|++++..+..+..++..+...|..-.+
T Consensus 16 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678899999999999999999999999999999999999999999999988876554
No 29
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=86.15 E-value=8.7 Score=28.58 Aligned_cols=81 Identities=10% Similarity=0.046 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024397 150 ETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVI 229 (268)
Q Consensus 150 ~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI 229 (268)
+-..++.+.+.+..+...+=.+=.+.++.=-..+..+.+.+..-...|..|.+.=++-.|+. .--++++++++++++++
T Consensus 25 ~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~-~i~l~~~~i~~~i~~~~ 103 (109)
T 3hd7_B 25 KLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK-IMIIICCVILGIIIAST 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-eehHHHHHHHHHHHHHH
Confidence 34444444444444443333333344455556677888888888888888887766655554 33566666666656665
Q ss_pred HH
Q 024397 230 AI 231 (268)
Q Consensus 230 ~~ 231 (268)
+.
T Consensus 104 ~~ 105 (109)
T 3hd7_B 104 IG 105 (109)
T ss_dssp HT
T ss_pred hc
Confidence 43
No 30
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=85.33 E-value=17 Score=31.28 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 024397 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG 208 (268)
Q Consensus 149 ~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~ 208 (268)
.+=...+..+.+.+.+..+|-.....-...|.++|++|+..|..+..++..|...|..-.
T Consensus 213 ~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~ 272 (279)
T 2xhe_B 213 RDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQAR 272 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678899999999999999999999999999999999999999999999988776543
No 31
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=84.61 E-value=9.6 Score=27.75 Aligned_cols=87 Identities=13% Similarity=0.253 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHH
Q 024397 9 PQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSM 88 (268)
Q Consensus 9 ~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~r~~ 88 (268)
.=|....+++...+..|...+..-.. .+. .....+++..+.+++..|++++..+..+++..+.+ +..|+++.
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~~~~--~~~--~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~E----I~~Rk~~v 77 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITRHNT--AGD--DDQEEEIQDILKDVEETIVDLDRSIIVMKRDENED----VSGREAQV 77 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCC--C----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCC----CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHccC--CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHH
Confidence 35778888888888888887655211 111 24466677778888888888888777766543333 45566654
Q ss_pred HHHHHHHHHHHHHHH
Q 024397 89 IKELNSYVALRKTYM 103 (268)
Q Consensus 89 ~~~l~~~~~l~k~~~ 103 (268)
..--+++..++..+.
T Consensus 78 ~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 78 KNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 433333555655553
No 32
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.32 E-value=16 Score=25.32 Aligned_cols=9 Identities=22% Similarity=-0.008 Sum_probs=1.1
Q ss_pred CcccccccH
Q 024397 1 MATDLQMSP 9 (268)
Q Consensus 1 ~~~~~~~s~ 9 (268)
||.+.+|..
T Consensus 12 ~~~~~~mgt 20 (72)
T 3nmd_A 12 MASIEGRGS 20 (72)
T ss_dssp -------CH
T ss_pred hhhcccCCc
Confidence 455566655
No 33
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=73.29 E-value=3.5 Score=34.78 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 024397 146 KTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVK 205 (268)
Q Consensus 146 ~~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~ 205 (268)
....+....+..+...+.+..++-..|..-...|.+.++.+...+..+...+..+..-+.
T Consensus 205 ~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~ 264 (279)
T 3c98_B 205 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 264 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999999999999999999988776655554443
No 34
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=69.58 E-value=8.2 Score=25.21 Aligned_cols=18 Identities=11% Similarity=0.205 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHh--hccCC
Q 024397 223 LIVCGVIAIIVVK--VVNPN 240 (268)
Q Consensus 223 li~i~iI~~i~~k--~~~~~ 240 (268)
+++++++.++.|| ||+.+
T Consensus 20 LLLL~Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 20 LLLLMLLILALWKIGFFKRP 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCcccCC
Confidence 3444555667776 56653
No 35
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=68.45 E-value=31 Score=24.99 Aligned_cols=60 Identities=8% Similarity=0.246 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHh
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~ 211 (268)
.+.|..++..++++..|=...++.+-...|.|+.+.++-+.....-..=.+.-+.+.|++
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888999999999999999888887766555444445555543
No 36
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=67.97 E-value=6.1 Score=30.05 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 024397 148 MDETDQAIKRSQMVVEQTIEVGTQT---ATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLI 224 (268)
Q Consensus 148 l~~~~~~L~~~~~~~~ete~iG~~i---l~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili 224 (268)
+.+....+++...++.+..+-=.+= +++|...++.|......+ -..|+++=+.|-.+-+.-++++++++++
T Consensus 35 l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F------~k~A~kl~rkmwwkn~K~~iii~~iv~i 108 (119)
T 2kog_A 35 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQF------ETSAAKLKRKYWWKNLKMMIILGVICAI 108 (119)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHH------HHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666664432221 234455554444333322 3345555556666656666666665554
Q ss_pred HHHHH
Q 024397 225 VCGVI 229 (268)
Q Consensus 225 ~i~iI 229 (268)
++.||
T Consensus 109 ii~iI 113 (119)
T 2kog_A 109 ILIII 113 (119)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 43333
No 37
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=67.24 E-value=46 Score=26.52 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh
Q 024397 157 RSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKV 236 (268)
Q Consensus 157 ~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI~~i~~k~ 236 (268)
..-.++..++.+|.+++.-|+.|.+++.++...+..+...++ -..-+++||... .+-..|-
T Consensus 58 sLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~---ih~EKvaRreIg----------------~lT~~k~ 118 (159)
T 3p8c_F 58 SLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVD---IHKEKVARREIG----------------ILTTNKN 118 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----------------TTCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh----------------hhccccc
Confidence 334678889999999999999999999999999887665532 233444555311 0112222
Q ss_pred ccCCCCccCCCCCCCCCcc
Q 024397 237 VNPNNKDIRDIPGLAPPAP 255 (268)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~ 255 (268)
. +...|+-.|+.++||.+
T Consensus 119 ~-~r~~kii~p~~~e~~~~ 136 (159)
T 3p8c_F 119 T-SRTHKIIAPANLERPVR 136 (159)
T ss_dssp C-CCCCSEECCSSCCCCCC
T ss_pred c-CCcCcccCCCCCCCCCC
Confidence 2 23556666677777764
No 38
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=64.25 E-value=12 Score=24.49 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHh--hccC
Q 024397 223 LIVCGVIAIIVVK--VVNP 239 (268)
Q Consensus 223 li~i~iI~~i~~k--~~~~ 239 (268)
+++++++.++.|| ||+.
T Consensus 23 LllL~li~~~LwK~GFFkR 41 (54)
T 2knc_A 23 LLLLTILVLAMWKVGFFKR 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCcccC
Confidence 3444555667776 5654
No 39
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=63.29 E-value=47 Score=25.18 Aligned_cols=89 Identities=11% Similarity=0.093 Sum_probs=50.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHH
Q 024397 6 QMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEK 85 (268)
Q Consensus 6 ~~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~ 85 (268)
..-..|+.++.+|+.+...=...+.....+ .+...+.+..-......+..-+..+..+. .-.-|+.+|...+
T Consensus 6 ~i~~~l~~Leae~q~L~~~E~qry~~eka~--AE~A~~~La~~~~l~~~i~er~~~i~~~~------~~~~yk~~y~~l~ 77 (119)
T 3etw_A 6 SLVGELQALDAEYQNLANQEEARFNEERAQ--ADAARQALAQNEQVYNELSQRAQRLQAEA------NTRFYKSQYQELA 77 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TSCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHH
Confidence 345679999999999987666666554332 12223333333333344444344443221 1235788888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024397 86 QSMIKELNSYVALRKTY 102 (268)
Q Consensus 86 r~~~~~l~~~~~l~k~~ 102 (268)
..|...++.+....+..
T Consensus 78 k~Y~~~~keLd~~ik~q 94 (119)
T 3etw_A 78 SKYEDALKKLEAEMEQQ 94 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88877766654444443
No 40
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=60.24 E-value=33 Score=22.47 Aligned_cols=57 Identities=9% Similarity=0.182 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 153 QAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 153 ~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
+.|..++..+.++..|=...++.+-...|.|+.+.++-++....-..=.+.=+.+.|
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r 58 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888889999999999998888887766554433333333333
No 41
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=59.59 E-value=12 Score=20.47 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=7.9
Q ss_pred HHHHHHHH-HHHHHhhc
Q 024397 222 FLIVCGVI-AIIVVKVV 237 (268)
Q Consensus 222 ili~i~iI-~~i~~k~~ 237 (268)
++|+++++ ++++|-|+
T Consensus 9 lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 9 LLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445555 44555554
No 42
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=59.04 E-value=12 Score=28.37 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=38.1
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHhhhhhhhccCCc-----hHHHHH-HHHHHHHHHHHH
Q 024397 1 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDS-----NRQTKQ-LEELTGRMRECK 56 (268)
Q Consensus 1 ~~~~~~~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~-----~~r~~~-i~~~~~~l~ea~ 56 (268)
|+|..+.-++++...+++..+..+|.+.+.++... ++ +.--++ |.++..+++.|+
T Consensus 1 ~~nl~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st-~~~~~~lEsiAAKIIkDisdkId~Ce 61 (129)
T 3f6n_A 1 MANLNQIQKEVSEILSDQKSMKADIKAILELLGSQ-NPIKESLETVAAKIVNDLTKLINDCP 61 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchhhhHHHHHHHHHHHHHHHHhcCc
Confidence 67777777888888888888888888877776552 22 333344 777777777764
No 43
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=56.83 E-value=5 Score=27.34 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=7.2
Q ss_pred CCCccCCCCCCCCC
Q 024397 240 NNKDIRDIPGLAPP 253 (268)
Q Consensus 240 ~~~~~~~~~~~~~~ 253 (268)
.+.+-+.+|.-++|
T Consensus 45 ~~qk~~~~~~~a~~ 58 (67)
T 2jp3_A 45 RNHTPSSLPEKVTP 58 (67)
T ss_dssp HTCCTTTSTTTSHH
T ss_pred CCCCCCCCCccCCc
Confidence 35555666644443
No 44
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=56.62 E-value=52 Score=23.62 Aligned_cols=59 Identities=14% Similarity=0.282 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024397 9 PQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKD 68 (268)
Q Consensus 9 ~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~ 68 (268)
+.+|++=.-|++-+..|.+.+. +..+......+..+.++...+--+.++|+.||.++..
T Consensus 4 s~LEdlc~hineKIs~ikk~L~-Lr~~gqdP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~ 62 (91)
T 4aj5_A 4 SDLEQLCSHVNEKIGNIKKTLS-LRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQY 62 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443332 2222222344566889999999999999999998884
No 45
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=55.83 E-value=41 Score=22.12 Aligned_cols=58 Identities=9% Similarity=0.252 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
.+.|..++..++++..|=...++.+-...|.|+.+.++-+...+.-..=.+.-+.+.|
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r 60 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888999999999998888888766654433333333333
No 46
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=54.12 E-value=20 Score=22.10 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHh--hccC
Q 024397 223 LIVCGVIAIIVVK--VVNP 239 (268)
Q Consensus 223 li~i~iI~~i~~k--~~~~ 239 (268)
+++++++.++.|| ||+.
T Consensus 21 LllL~li~~~LwK~GFFkR 39 (42)
T 2k1a_A 21 LLLLTILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHcCcccC
Confidence 3444555667776 5554
No 47
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=50.42 E-value=14 Score=25.92 Aligned_cols=15 Identities=20% Similarity=0.649 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhc
Q 024397 223 LIVCGVIAIIVVKVV 237 (268)
Q Consensus 223 li~i~iI~~i~~k~~ 237 (268)
+++++++++++||++
T Consensus 21 illiGllllliwk~~ 35 (79)
T 2knc_B 21 ILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566666777754
No 48
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=48.51 E-value=31 Score=21.93 Aligned_cols=33 Identities=6% Similarity=-0.046 Sum_probs=18.3
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHhhccC
Q 024397 206 EIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNP 239 (268)
Q Consensus 206 ~m~rr~~~dK~il~~iili~i~iI~~i~~k~~~~ 239 (268)
.|.||-+-|++++..+ .++.+..++-+.+||-|
T Consensus 8 dm~RRqfln~l~~G~~-a~~a~~~~~P~v~ffvp 40 (49)
T 1q90_R 8 DMNKRNIMNLILAGGA-GLPITTLALGYGAFFVP 40 (49)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHhhheeecC
Confidence 4788877776665443 33334445555555543
No 49
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=47.91 E-value=63 Score=21.97 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHh
Q 024397 155 IKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (268)
Q Consensus 155 L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr~ 211 (268)
|..++..+.++..|=...++.+-...|.|+.+.++-++....-..=.+.-+.+.|++
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ 66 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 66 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666677777778888888888888877776666554444445555554
No 50
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=47.30 E-value=19 Score=21.47 Aligned_cols=14 Identities=43% Similarity=0.645 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhh
Q 024397 223 LIVCGVIAIIVVKV 236 (268)
Q Consensus 223 li~i~iI~~i~~k~ 236 (268)
+++.+++++++|-+
T Consensus 11 livalIiaIVVWti 24 (36)
T 1pi7_A 11 LVVAIIIAIVVWSI 24 (36)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 51
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=46.69 E-value=72 Score=22.29 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024397 40 RQTKQLEELTGRMRECKRL 58 (268)
Q Consensus 40 ~r~~~i~~~~~~l~ea~~l 58 (268)
.|+..+..++.+|.++++.
T Consensus 49 ~R~~~V~~lq~Ki~elkrq 67 (78)
T 2ic6_A 49 SRRAAVSALETKLGELKRE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555443
No 52
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=45.96 E-value=63 Score=21.46 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 024397 154 AIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (268)
Q Consensus 154 ~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~r 209 (268)
.|...+..+.++..+-....+.|.+-.|.|+.+.++.++..+.-..=.+.-+.+.+
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888888888888889999998888888877665544444444433
No 53
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=45.15 E-value=86 Score=22.77 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024397 81 LNDEKQSMIKELNSY 95 (268)
Q Consensus 81 ~~~r~r~~~~~l~~~ 95 (268)
+.+|--|+..+|+.|
T Consensus 76 LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 76 LRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555666666653
No 54
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=42.91 E-value=38 Score=21.13 Aligned_cols=8 Identities=38% Similarity=0.576 Sum_probs=3.3
Q ss_pred hHHHHHHH
Q 024397 194 QFSIKKAS 201 (268)
Q Consensus 194 ~~~l~~a~ 201 (268)
.+.+.+|.
T Consensus 9 rsairras 16 (52)
T 1fjk_A 9 RSAIRRAS 16 (52)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 55
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=42.74 E-value=92 Score=22.40 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcc---CCchHHHHHHHHHHHHHHHHHHH
Q 024397 9 PQLEQIHGEIRDNFRALSNGFQKLDKI---KDSNRQTKQLEELTGRMRECKRL 58 (268)
Q Consensus 9 ~~~~~ye~ei~~~~~~l~~~~~~l~~~---~~~~~r~~~i~~~~~~l~ea~~l 58 (268)
+++...+..+.+...++.+.+++|-+. ..+++|...+..++..+..+..+
T Consensus 25 ~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l 77 (104)
T 4afl_A 25 QLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEF 77 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777765432 13456666666666666665544
No 56
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=42.58 E-value=5.5 Score=22.65 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=11.6
Q ss_pred CccCCCCCCCCCccccc
Q 024397 242 KDIRDIPGLAPPAPARR 258 (268)
Q Consensus 242 ~~~~~~~~~~~~~~~~~ 258 (268)
.++.+.|-|+||+-|||
T Consensus 6 ~~~~~~~~PaP~p~RRr 22 (32)
T 2jpw_A 6 SDAAGEPQPAPAPVRRR 22 (32)
T ss_dssp HHHHSCCCCCCCCCCCT
T ss_pred ccCCCCCCCCCcccccc
Confidence 34567788888875655
No 57
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=42.39 E-value=36 Score=23.64 Aligned_cols=57 Identities=11% Similarity=0.240 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024397 154 AIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (268)
Q Consensus 154 ~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr 210 (268)
.|..++..++++..|=...++.+-...|.|+.+.++-+...+.-..=.+.-+.+.|+
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk 72 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777788888889999988888887665543333333334443
No 58
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=41.52 E-value=29 Score=21.37 Aligned_cols=15 Identities=20% Similarity=0.649 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhc
Q 024397 223 LIVCGVIAIIVVKVV 237 (268)
Q Consensus 223 li~i~iI~~i~~k~~ 237 (268)
+++++++++++||++
T Consensus 20 ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 20 ILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344567777888875
No 59
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=41.02 E-value=58 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 024397 9 PQLEQIHGEIRDNFRALSNGFQK 31 (268)
Q Consensus 9 ~~~~~ye~ei~~~~~~l~~~~~~ 31 (268)
+.++.+++|+...=..|....++
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQK 57 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQK 57 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777766665444444444
No 60
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=40.91 E-value=58 Score=25.39 Aligned_cols=30 Identities=7% Similarity=0.176 Sum_probs=22.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024397 74 PPEVNKQLNDEKQSMIKELNSYVALRKTYMN 104 (268)
Q Consensus 74 ~~~~r~~~~~r~r~~~~~l~~~~~l~k~~~~ 104 (268)
.+.|..+ ..|-..+.+.|..++++-..|..
T Consensus 108 dp~y~ek-K~Rc~yL~~KLsHIK~lI~~YD~ 137 (140)
T 1xaw_A 108 SADYKSK-KNHCKQLKSKLSHIKKMVGDYDR 137 (140)
T ss_dssp SHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHHHhhhc
Confidence 4566543 44777899999999998888865
No 61
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=40.44 E-value=1e+02 Score=22.33 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 024397 11 LEQIHGEIRDN 21 (268)
Q Consensus 11 ~~~ye~ei~~~ 21 (268)
++.+++||...
T Consensus 7 i~eLq~e~~~~ 17 (96)
T 2ic9_A 7 LKEVQDNITLH 17 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455555444
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.06 E-value=1.4e+02 Score=28.25 Aligned_cols=27 Identities=11% Similarity=0.339 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024397 8 SPQLEQIHGEIRDNFRALSNGFQKLDK 34 (268)
Q Consensus 8 s~~~~~ye~ei~~~~~~l~~~~~~l~~ 34 (268)
=.++...|.++...+++|.+.+..+.+
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHh
Confidence 346777778888888888777776644
No 63
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=35.97 E-value=99 Score=20.85 Aligned_cols=25 Identities=0% Similarity=-0.007 Sum_probs=14.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhh
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQK 31 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~~ 31 (268)
|+..+.+...+|..+...-......
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~ 31 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEE 31 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6667777777777776544333333
No 64
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=34.99 E-value=1.1e+02 Score=21.06 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024397 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (268)
Q Consensus 147 ~l~~~~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~l~~a~~~l~~m~rr 210 (268)
-.+...+.+..+...+.+.+.-....-+++..=...|..+.++++.+...+..+...|..-.+.
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888899988989899999999999999999999999999999888765544
No 65
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=34.33 E-value=1.2e+02 Score=21.29 Aligned_cols=20 Identities=15% Similarity=0.456 Sum_probs=16.1
Q ss_pred cc-HHHHHHHHHHHHHHHHHH
Q 024397 7 MS-PQLEQIHGEIRDNFRALS 26 (268)
Q Consensus 7 ~s-~~~~~ye~ei~~~~~~l~ 26 (268)
|| ++|+.+|+.|+..+..|+
T Consensus 3 MS~ElleqLE~KIq~avdtI~ 23 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT 23 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 77 889999999888877653
No 66
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=31.39 E-value=1.7e+02 Score=22.08 Aligned_cols=83 Identities=11% Similarity=0.164 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhccCChhhhHHHHH
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRL---IKEMDREIKDEEARNPPEVNKQLND 83 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~l---l~~me~Ei~~~~~~~~~~~r~~~~~ 83 (268)
.-..|+++|.||+.+...=...+.. +++....+...|.+-..+ |.+-...+.... .-..|+.+|+.
T Consensus 7 V~s~l~~LEaeyq~L~~kE~qrynq---------eka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~--~~~~yK~eY~~ 75 (119)
T 2avr_X 7 LVGELQALDAEYQNLANQEEARFNE---------ERAQADAARQALAQNEQVYNELSQRAQRLQAEA--NTRFYKSQYQE 75 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHH
Confidence 4467888899998887654444433 333344444444444332 222222333322 13467888887
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024397 84 EKQSMIKELNSYVALRK 100 (268)
Q Consensus 84 r~r~~~~~l~~~~~l~k 100 (268)
-++.|..-++.+..-.+
T Consensus 76 L~KkYk~~~~~Ld~eI~ 92 (119)
T 2avr_X 76 LASKYEDALKKLEAEME 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777666665443333
No 67
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.06 E-value=1.1e+02 Score=20.05 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhHH
Q 024397 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFS 196 (268)
Q Consensus 152 ~~~L~~~~~~~~ete~iG~~il~eL~~Q~e~l~~~~~~v~~~~~~ 196 (268)
.+.|..++..+.++..|=..-++.+-...|.|+.+.++-++....
T Consensus 8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~ 52 (65)
T 1gl2_A 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEAT 52 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566677777777777778888888888888888777765544
No 68
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=28.93 E-value=56 Score=20.21 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=4.3
Q ss_pred HHHHHHHhhcc
Q 024397 228 VIAIIVVKVVN 238 (268)
Q Consensus 228 iI~~i~~k~~~ 238 (268)
+|+++++.|++
T Consensus 26 ii~~~~~~~~R 36 (44)
T 2ks1_B 26 VVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 33333333433
No 69
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=28.26 E-value=72 Score=19.21 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhh
Q 024397 225 VCGVIAIIVVKV 236 (268)
Q Consensus 225 ~i~iI~~i~~k~ 236 (268)
++++|++|.|.+
T Consensus 23 iIG~IllI~y~I 34 (40)
T 1afo_A 23 VIGTILLISYGI 34 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344445555543
No 70
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=27.88 E-value=34 Score=23.62 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=3.1
Q ss_pred HHHHHhhcc-CCCCccCCCCCCCC
Q 024397 230 AIIVVKVVN-PNNKDIRDIPGLAP 252 (268)
Q Consensus 230 ~~i~~k~~~-~~~~~~~~~~~~~~ 252 (268)
++|..+-.+ +.+.|-+..|..++
T Consensus 36 ~iilS~kcrCk~~qk~~~~p~d~~ 59 (74)
T 2zxe_G 36 IILLAGKCRCKFNQNKRTRSNSGT 59 (74)
T ss_dssp HHHTTTC-----------------
T ss_pred HHHHcCccccCCCCCCCCCCCccc
Confidence 334444444 33666666676554
No 71
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=27.73 E-value=1.5e+02 Score=20.37 Aligned_cols=59 Identities=12% Similarity=0.250 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhh----hhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024397 8 SPQLEQIHGEIRDNFRALSNGFQK----LDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIK 67 (268)
Q Consensus 8 s~~~~~ye~ei~~~~~~l~~~~~~----l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~ 67 (268)
+..|...-.+|...+..|.+.+.. |.. .....=.....+....+..+..+|.++..+++
T Consensus 17 A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G-~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~ 79 (98)
T 3gwk_C 17 AQKYTAGSQQVTEVLNLLTQEQAVIDENWDG-STFDSFEAQFNELSPKITEFAQLLEDINQQLL 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHBCS-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666655554 333 12233333344555555555555555554444
No 72
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=26.59 E-value=1.4e+02 Score=21.71 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcc-CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 11 LEQIHGEIRDNFRALSNGFQKLDKI-KDSNRQTKQLEELTGRMRECKRLIKEM 62 (268)
Q Consensus 11 ~~~ye~ei~~~~~~l~~~~~~l~~~-~~~~~r~~~i~~~~~~l~ea~~ll~~m 62 (268)
||.--+++..++..|+++=-.|+.. ...++=.+.++.|+..|+.|+.-|..+
T Consensus 32 FEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 32 FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVL 84 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777877777653333321 112333345666777777777655555
No 73
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.97 E-value=1.6e+02 Score=19.88 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 41 QTKQLEELTGRMRECKRLIKEMDR 64 (268)
Q Consensus 41 r~~~i~~~~~~l~ea~~ll~~me~ 64 (268)
+.+.|.+++.++.+++.....+..
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~ 50 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTL 50 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666666665555444443
No 74
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.34 E-value=2.9e+02 Score=28.54 Aligned_cols=96 Identities=6% Similarity=0.110 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHH
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQ-LEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEK 85 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~-i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~~~r~ 85 (268)
+.+.+..+++....-+.+|+..+..+.....-...... +..++..+++.++-+.....|...++. .....+..+..++
T Consensus 947 L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee-~~~~~~~~L~~kv 1025 (1080)
T 2dfs_A 947 LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE-WADKYKHETEQLV 1025 (1080)
T ss_dssp ----CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024397 86 QSMIKELNSYVALRKTYM 103 (268)
Q Consensus 86 r~~~~~l~~~~~l~k~~~ 103 (268)
..+.++...+++....++
T Consensus 1026 ~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1026 SELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 75
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=23.87 E-value=2e+02 Score=20.53 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Q 024397 17 EIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIK 60 (268)
Q Consensus 17 ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~ 60 (268)
++-....++.+.+..+.. ..++|...+++++.+++++-.-|+
T Consensus 22 eL~kQk~eL~~~l~~l~~--e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 22 QLIKQKDQLNSLLASLES--EGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc
Confidence 333444455555555555 357888899999999998766544
No 76
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=23.79 E-value=17 Score=31.26 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 024397 216 CIMLFLFLIVCGVIAIIVVKVVNPN 240 (268)
Q Consensus 216 ~il~~iili~i~iI~~i~~k~~~~~ 240 (268)
|++.+++++.+++|++++|++++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T 2w1k_A 225 WLYRGLVVLAFLGILFVLWKLARLL 249 (252)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444443333334556777776643
No 77
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=23.66 E-value=1.7e+02 Score=22.15 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh
Q 024397 197 IKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVK 235 (268)
Q Consensus 197 l~~a~~~l~~m~rr~~~dK~il~~iili~i~iI~~i~~k 235 (268)
+-..++.++.+.+......+.+++++++++.+++.++|.
T Consensus 8 ~~~l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 46 (148)
T 3vou_A 8 ILTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYS 46 (148)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666654333333333333333333444443
No 78
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=23.57 E-value=29 Score=24.05 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=5.7
Q ss_pred HhHhHHHHHHHHHH
Q 024397 191 DTIQFSIKKASQLV 204 (268)
Q Consensus 191 ~~~~~~l~~a~~~l 204 (268)
+...+-+..+.+++
T Consensus 10 e~~~~f~kd~~rvl 23 (74)
T 1rh5_B 10 EQLKEFIEECRRVW 23 (74)
T ss_dssp --CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444555444
No 79
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=23.05 E-value=1.6e+02 Score=19.10 Aligned_cols=43 Identities=7% Similarity=0.152 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHH------HhHhHHHHHHHHHHHHHHHHhh
Q 024397 170 TQTATTLKGQTDQMGRIVNEL------DTIQFSIKKASQLVKEIGRQVA 212 (268)
Q Consensus 170 ~~il~eL~~Q~e~l~~~~~~v------~~~~~~l~~a~~~l~~m~rr~~ 212 (268)
..|-++|..|.-.|..++..+ ...+..|=.+.++|..+-|+..
T Consensus 6 e~I~~El~kQe~lL~~LH~e~~ag~~~~~~eE~lWeVQriiTqLKRKLk 54 (56)
T 2kwh_A 6 AGIKEEIRRQEFLLNSLHRDLQGGIKDLSKEERLWEVQRILTALKRKLR 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHc
Confidence 457788999999999999887 3456677778888888877653
No 80
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=22.74 E-value=73 Score=29.76 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHH-HHHHHhh
Q 024397 215 KCIMLFLFLIVCGVI-AIIVVKV 236 (268)
Q Consensus 215 K~il~~iili~i~iI-~~i~~k~ 236 (268)
+++++.++++++.++ .+++..+
T Consensus 284 ~y~~~~m~lv~~Sll~tv~Vlnl 306 (488)
T 4aq5_E 284 KYLIFVMFVSLVIVTNCVIVLNV 306 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhEEEE
Confidence 444444444444444 3333444
No 81
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.55 E-value=4.7e+02 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024397 8 SPQLEQIHGEIRDNFRALSNGFQKLDK 34 (268)
Q Consensus 8 s~~~~~ye~ei~~~~~~l~~~~~~l~~ 34 (268)
..-|-.|++.++..+.+|+..+..+..
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 445667777777777777777777654
No 82
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=22.09 E-value=1.1e+02 Score=20.60 Aligned_cols=26 Identities=12% Similarity=0.460 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024397 43 KQLEELTGRMRECKRLIKEMDREIKD 68 (268)
Q Consensus 43 ~~i~~~~~~l~ea~~ll~~me~Ei~~ 68 (268)
+.+..++..|+.|+..|+.++.|++.
T Consensus 26 ~~vgdiEqeLe~Ck~sIrrLE~evn~ 51 (72)
T 1k1f_A 26 RSVGDIEQELERAKASIRRLEQEVNQ 51 (72)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 45888999999999999999988874
No 83
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=22.06 E-value=3.8e+02 Score=23.05 Aligned_cols=82 Identities=12% Similarity=0.215 Sum_probs=48.9
Q ss_pred ccHHHHHHHHH----------HHHHHHHHHhhhhh----hhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 024397 7 MSPQLEQIHGE----------IRDNFRALSNGFQK----LDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEAR 72 (268)
Q Consensus 7 ~s~~~~~ye~e----------i~~~~~~l~~~~~~----l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~ 72 (268)
+...|++|.++ +-.+.++|+...++ +++..........+.+++..++++..++.++-.++...+
T Consensus 35 v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~~~~~La~~l~~~~-- 112 (290)
T 3qb5_K 35 VMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGED-- 112 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCC--
Confidence 33556666554 44555666654333 445321122455689999999999999998888777642
Q ss_pred CChhhhHHHHHHHHHHHHH
Q 024397 73 NPPEVNKQLNDEKQSMIKE 91 (268)
Q Consensus 73 ~~~~~r~~~~~r~r~~~~~ 91 (268)
.-.|...+..-++.|...
T Consensus 113 -~yry~~~~s~~lQEyVEA 130 (290)
T 3qb5_K 113 -MHQFHRAITTGLQEYVEA 130 (290)
T ss_dssp -STTTGGGTHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 234444455555555443
No 84
>1dpj_B IA3, proteinase inhibitor IA3 peptide; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: a.137.7.1 PDB: 1g0v_B*
Probab=22.00 E-value=80 Score=17.62 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=16.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhh
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQK 31 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~~ 31 (268)
.||.|.+-.+.++.--+-+...+++
T Consensus 7 vseifqsskeklqgdakvvsdafkk 31 (33)
T 1dpj_B 7 VSEIFQSSKEKLQGDAKVVSDAFKK 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHhccchHHHHHHHHh
Confidence 6778888877777665555555544
No 85
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=21.35 E-value=1.4e+02 Score=25.36 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH-------HHHHhHhHHHHHHHHHHHHHH---HHhhhchHHHHH
Q 024397 166 IEVGTQTATTLKGQTDQMGRIV-------NELDTIQFSIKKASQLVKEIG---RQVATDKCIMLF 220 (268)
Q Consensus 166 e~iG~~il~eL~~Q~e~l~~~~-------~~v~~~~~~l~~a~~~l~~m~---rr~~~dK~il~~ 220 (268)
.++=.+++.||.+|+.++..-. +.++.+-+.++.+...|..+. .....|+|++.+
T Consensus 58 ~dlK~eLlKeLERq~~~L~~~~~~P~Vd~~~l~~~l~~l~~~~~~L~~~~r~Gq~Lrede~L~~i 122 (247)
T 2oez_A 58 IQLKSELAKDLEKQRLSYRHWLNVEGVDQEALNSLLNEIDVVHSQLMGAERFGQALKEDRFLSSI 122 (247)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCcccchhhHhHHHHHH
Confidence 3577889999999999999864 678888888888887777654 446788888875
No 86
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=20.89 E-value=91 Score=18.53 Aligned_cols=23 Identities=4% Similarity=0.166 Sum_probs=11.4
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHH
Q 024397 183 MGRIVNELDTIQFSIKKASQLVK 205 (268)
Q Consensus 183 l~~~~~~v~~~~~~l~~a~~~l~ 205 (268)
|..+...+......|..|+.+|.
T Consensus 14 L~~~n~sl~~A~~~l~~Sn~~L~ 36 (38)
T 1svf_B 14 LAAVNKSLSDALQHLAQSDTYLS 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554
No 87
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=20.88 E-value=3.1e+02 Score=21.54 Aligned_cols=91 Identities=12% Similarity=0.192 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCc--hH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHH
Q 024397 12 EQIHGEIRDNFRALSNGFQKLDKIKDS--NR-------Q-TKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQL 81 (268)
Q Consensus 12 ~~ye~ei~~~~~~l~~~~~~l~~~~~~--~~-------r-~~~i~~~~~~l~ea~~ll~~me~Ei~~~~~~~~~~~r~~~ 81 (268)
..|..-|...++++...+..+...-.| ++ . ...-..+...+++++.-|..+--|++..-...-.++|..+
T Consensus 58 qel~~~l~~~ld~l~~~~~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl 137 (165)
T 1gs9_A 58 QELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRL 137 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777766665543222 11 1 1123346666777777777777777765443334555555
Q ss_pred HHHHHHHHHHHHH-HHHHHHHH
Q 024397 82 NDEKQSMIKELNS-YVALRKTY 102 (268)
Q Consensus 82 ~~r~r~~~~~l~~-~~~l~k~~ 102 (268)
.-..+.|+..++. ...++..+
T Consensus 138 ~P~~eeL~~~~~~~~eeLr~kL 159 (165)
T 1gs9_A 138 ASHLRKLRKRLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 5444444444443 33344433
No 88
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.57 E-value=3.2e+02 Score=24.52 Aligned_cols=53 Identities=11% Similarity=0.240 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 024397 10 QLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEM 62 (268)
Q Consensus 10 ~~~~ye~ei~~~~~~l~~~~~~l~~~~~~~~r~~~i~~~~~~l~ea~~ll~~m 62 (268)
-++++++++..+..++...-.++...+...+.+.++++++..++..+..|.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 248 YIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333332333444455666666666665555543
No 89
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=20.55 E-value=73 Score=18.99 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=5.4
Q ss_pred HHHHHHhhcc
Q 024397 229 IAIIVVKVVN 238 (268)
Q Consensus 229 I~~i~~k~~~ 238 (268)
+++|+|-|+.
T Consensus 20 ~LIVlYH~v~ 29 (37)
T 2lat_A 20 LLVVLYHYVA 29 (37)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3555566654
No 90
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=20.30 E-value=1.2e+02 Score=21.62 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhhhhhcc-CCchHHHHHHHHHHHHHHHHHHHHHH
Q 024397 16 GEIRDNFRALSNGFQKLDKI-KDSNRQTKQLEELTGRMRECKRLIKE 61 (268)
Q Consensus 16 ~ei~~~~~~l~~~~~~l~~~-~~~~~r~~~i~~~~~~l~ea~~ll~~ 61 (268)
.++++++.++...-.++.+. ....+|...+.++..++..|.++-++
T Consensus 33 ~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~ 79 (91)
T 2pjw_V 33 SKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDR 79 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444443333321 12344444455555555555544443
No 91
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.22 E-value=2.5e+02 Score=20.26 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=14.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 024397 7 MSPQLEQIHGEIRDNFRALSNGFQKLDK 34 (268)
Q Consensus 7 ~s~~~~~ye~ei~~~~~~l~~~~~~l~~ 34 (268)
|+..|..+..++.....+++..|..+.+
T Consensus 34 Ls~tfarLc~~Vd~t~~eL~~EI~~L~~ 61 (96)
T 1t3j_A 34 MATTFARLCQQVDMTQKHLEEEIARLSK 61 (96)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544443
No 92
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=20.13 E-value=1.9e+02 Score=21.47 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 024397 79 KQLNDEKQSMIKEL 92 (268)
Q Consensus 79 ~~~~~r~r~~~~~l 92 (268)
+..-.+++.+...|
T Consensus 88 K~aVk~iQ~~l~~L 101 (111)
T 1uk5_A 88 RDGVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
Done!