Query 024398
Match_columns 268
No_of_seqs 112 out of 279
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2957 Vacuolar H+-ATPase V0 100.0 4.3E-85 9.3E-90 586.7 19.6 268 1-268 1-268 (350)
2 COG1527 NtpC Archaeal/vacuolar 100.0 1.6E-51 3.5E-56 384.4 23.1 251 11-267 7-257 (346)
3 PF01992 vATP-synt_AC39: ATP s 100.0 7.8E-47 1.7E-51 350.3 14.0 251 15-268 1-252 (337)
4 TIGR02923 AhaC ATP synthase A1 100.0 1.1E-43 2.3E-48 330.6 25.7 253 11-268 3-259 (343)
5 PRK01198 V-type ATP synthase s 100.0 3.8E-42 8.3E-47 320.9 25.2 255 9-268 7-265 (352)
6 PRK01198 V-type ATP synthase s 99.9 2.7E-22 5.9E-27 187.2 21.0 211 26-240 132-349 (352)
7 TIGR02923 AhaC ATP synthase A1 99.8 1.9E-17 4.1E-22 154.2 21.3 212 25-240 125-341 (343)
8 PF01992 vATP-synt_AC39: ATP s 99.6 1.1E-14 2.3E-19 135.2 10.4 210 28-240 120-335 (337)
9 COG1527 NtpC Archaeal/vacuolar 99.4 1.9E-11 4.2E-16 115.0 19.9 208 30-242 129-344 (346)
10 KOG2957 Vacuolar H+-ATPase V0 96.4 0.036 7.8E-07 51.4 10.7 201 13-229 102-336 (350)
11 PF10962 DUF2764: Protein of u 95.2 0.15 3.2E-06 47.0 9.3 135 64-235 22-164 (271)
12 PF12345 DUF3641: Protein of u 36.1 82 0.0018 26.1 4.9 94 66-159 4-113 (134)
13 PRK14082 hypothetical protein; 33.2 1.6E+02 0.0034 21.3 5.3 58 29-100 7-64 (65)
14 PF12249 AftA_C: Arabinofurano 32.2 26 0.00056 30.3 1.4 35 128-163 78-116 (178)
15 PTZ00473 Plasmodium Vir superf 27.0 1.2E+02 0.0027 29.5 5.1 64 67-130 109-176 (420)
16 PF12554 MOZART1: Mitotic-spin 25.6 58 0.0013 22.1 2.0 31 208-238 11-41 (48)
17 PRK12794 flaF flagellar biosyn 22.2 4.2E+02 0.0091 21.3 6.9 98 52-152 6-106 (122)
18 PF10962 DUF2764: Protein of u 21.9 1.3E+02 0.0029 27.7 4.2 37 89-125 129-166 (271)
19 PF08384 NPP: Pro-opiomelanoco 20.2 86 0.0019 21.0 1.9 28 220-249 16-43 (45)
20 PF09851 SHOCT: Short C-termin 20.2 84 0.0018 19.0 1.8 15 23-37 12-26 (31)
21 PF07899 Frigida: Frigida-like 20.1 5.3E+02 0.011 23.9 7.8 149 64-233 99-260 (290)
No 1
>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion]
Probab=100.00 E-value=4.3e-85 Score=586.68 Aligned_cols=268 Identities=67% Similarity=1.078 Sum_probs=264.8
Q ss_pred CCCCCcccccCCCchHHHhHHhHhccCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCCCCCCCHHHHHHHHHHhHHH
Q 024398 1 MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVD 80 (268)
Q Consensus 1 ~~~~~~~~fn~~~gY~~a~VRg~~~~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~~~~~~~~~Ie~~L~~~L~~ 80 (268)
|..|+.++||++|||++|.|||.|+|+|+++||.+|+|||||||++.+|++||||.+++++++++|++.|+++|+++|+.
T Consensus 1 m~~~~~~~fn~~~GYle~lvrG~k~glL~~~dY~nL~QCE~LEDlki~Ls~Tdyg~fl~n~~s~lt~s~I~~~l~ekL~~ 80 (350)
T KOG2957|consen 1 MLMMEALSFNIDYGYLEALVRGKKAGLLKQADYNNLVQCENLEDLKIHLSSTDYGNFLANEPSPLTVSVIDEKLREKLVD 80 (350)
T ss_pred CCcccceEEeccccchHHHHhhhhhhhhhHHHHHHHHhhccHHHHHHhhcccccccccccCCCCCcHHHHHHHHHHHHHH
Confidence 66788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccHHHHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHhhccCCCCccchhHHHhhcCHHHHHHHHhcCCCC
Q 024398 81 EYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPL 160 (268)
Q Consensus 81 ~f~~l~~~a~~~l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~~l~~L~~a~~v~el~~~vL~~Tp~ 160 (268)
+|+++|.+|.+|+++||+|+++.||||||.++|+|++++|+..+++++|||+|+|+++.+|.+|+|+.|+|++||++||+
T Consensus 81 ef~h~R~~a~epl~tfldyity~ymIdNv~lLitgtl~~r~~~ell~kChpLG~F~~l~ai~vA~n~~ely~~vlvdTpl 160 (350)
T KOG2957|consen 81 EFDHIRDQADEPLSTFLDYITYGYMIDNVILLITGTLHDRDVGELLEKCHPLGSFDQLEAIKVASNPAELYNAVLVDTPL 160 (350)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhHHHHHHhccccCCCHHHHHHhcCCcCchhhhhhhhhcCCHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhcc
Q 024398 161 APYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240 (268)
Q Consensus 161 ~~~~~~~l~~~~~~~~~ie~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l 240 (268)
+|||++|+++++++++|+|++||.|+|+|+|+||+||+++||.|+++|+++|+||||||+|.|++||++++|++++|.+|
T Consensus 161 a~~F~dc~~~~dld~mniEIiRn~lYKaylE~fY~fc~~~g~~tae~M~~iL~fEaDRRai~ItiNs~gteL~~~~R~kL 240 (350)
T KOG2957|consen 161 APYFEDCLSEEDLDEMNIEIIRNTLYKAYLEDFYNFCKKLGGATAEVMCEILAFEADRRAIIITINSFGTELSKEDRAKL 240 (350)
T ss_pred hHHHHhhcCHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccceeEEEehhhcccccChhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCHHhHHhhccCCChHHHhhhC
Q 024398 241 YSNFGLLYPYGHEELAVCEDIDQVCFQF 268 (268)
Q Consensus 241 ~P~~g~L~~~~~~~L~~a~~~e~v~~~~ 268 (268)
||++|+|||.++..||.|+|.|+|++|+
T Consensus 241 ~P~~g~lyp~~~~~La~aed~e~vk~v~ 268 (350)
T KOG2957|consen 241 YPNCGKLYPRGLELLARAEDYEQVKNVL 268 (350)
T ss_pred CCCcCccChhHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999999873
No 2
>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]
Probab=100.00 E-value=1.6e-51 Score=384.41 Aligned_cols=251 Identities=27% Similarity=0.380 Sum_probs=234.9
Q ss_pred CCCchHHHhHHhHhccCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCCCCCCCHHHHHHHHHHhHHHHHHHHHHhcC
Q 024398 11 IHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQAT 90 (268)
Q Consensus 11 ~~~gY~~a~VRg~~~~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~ 90 (268)
.+|+|++||||||+++||++++|++|+||+|++|++++|++|+|++.++++++ .+.+.+|++|.++|+++|+.++.+++
T Consensus 7 ~~y~y~~~RIr~~e~~lL~~e~~~~Ll~~~~lee~~~~L~~T~Y~~~~d~l~~-~~~~~le~aL~~~L~~~~~~i~~~sp 85 (346)
T COG1527 7 APYAYPNARIRVMEARLLTDEQYSELLEAESLEEFARVLEETDYKEDLDSLTS-LGPDLLEKALNRKLVDTYRLILRISP 85 (346)
T ss_pred ccccccchhHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHhcCCchhHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHhCC
Confidence 57999999999999999999999999999999999999999999999999887 68999999999999999999999999
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHhhccCCCCccchhHHHhhcCHHHHHHHHhcCCCChhhhhhhccc
Q 024398 91 EPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITS 170 (268)
Q Consensus 91 ~~l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~~l~~L~~a~~v~el~~~vL~~Tp~~~~~~~~l~~ 170 (268)
+.+++++++++++|||||||+++|||++| +++++...|||+|+|+.+.+++.++|+++++.. +.+|+|.++++..+.
T Consensus 86 ~~~k~~i~~~l~k~di~NIk~li~ak~~g-~~~~~~~~liP~G~~~~~~~l~~a~t~eev~~~-~~~~~y~~~~~~~~~- 162 (346)
T COG1527 86 GSIKKLIDAYLYKWDIENIKTLLRAKLAG-DPEEISDLLIPLGDFETLLTLAEAKTMEEVVET-LEGTTYLAPLEEALR- 162 (346)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CccchHHhcCcCchHHHHHHHHhhcchHHHHHH-HhcCchhHHHHHHHH-
Confidence 99999999999999999999999999999 999999999999999999999999999999999 688888888874332
Q ss_pred cccCCccHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhccccCCCccCHH
Q 024398 171 EDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPY 250 (268)
Q Consensus 171 ~~~~~~~ie~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l~P~~g~L~~~ 250 (268)
+..+..|++++|+.|||+|||++++++++..+.+ +|.++++++||++||.+++|+++.+++.+.+..++|.+|.|+++
T Consensus 163 ~y~~~~~i~~le~~Ldk~Yye~l~~~~~~~~~~~--~~~~~~~~eID~~Ni~~~lr~k~~~~~~e~~~~li~~gg~l~~~ 240 (346)
T COG1527 163 DYEDTGDIEPLENALDKAYYEDLLRSVNSEKGDE--LLREFLRLEIDRRNIKTALRGKASELSEELMESLIPDGGSLDAS 240 (346)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhcCCCccCCHH
Confidence 3355689999999999999999999998866665 99999999999999999999999888888889999999999999
Q ss_pred hHHhhccCCChHHHhhh
Q 024398 251 GHEELAVCEDIDQVCFQ 267 (268)
Q Consensus 251 ~~~~L~~a~~~e~v~~~ 267 (268)
.+..|++++|+.+|.+.
T Consensus 241 ~~~~l~~~ed~~~~~~~ 257 (346)
T COG1527 241 ALRDLAEAEDILDVLEA 257 (346)
T ss_pred HHHHHHhcccHHHHHHH
Confidence 99999999998888764
No 3
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=100.00 E-value=7.8e-47 Score=350.26 Aligned_cols=251 Identities=28% Similarity=0.432 Sum_probs=197.3
Q ss_pred hHHHhHHhHhccCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCccHH
Q 024398 15 YLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLS 94 (268)
Q Consensus 15 Y~~a~VRg~~~~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~~~l~ 94 (268)
|++||||||+++||++++|.+|++|+|++|+...|++|.||+++++.+...|+..||.+|+++++++|+.++++++++.+
T Consensus 1 Y~~arvra~~~~lL~~~~~~~L~~~~~~~~~~~~l~~t~Y~~~l~~~~~~~~~~~iE~~L~~~l~~~~~~l~~~~~~~~~ 80 (337)
T PF01992_consen 1 YVNARVRAMEAKLLTKEDYEELLEAESVEEAVSLLEDTGYGDYLEEVSSEIHRRDIEQALRRELFKEFQKLLRFAPGEAK 80 (337)
T ss_dssp HHHHHHHHHGGGS--HHHHHHHTTS-HHHHHHHHHTS-GGGGG--SSSHH----HHHHHHHHHHHHHTTTGGGG--HHHH
T ss_pred ChhHhHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHhcccHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHhCCchHH
Confidence 89999999999999999999999999999999999999999999987655689999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHhhccCCC-CccchhHHHhhcCHHHHHHHHhcCCCChhhhhhhcccccc
Q 024398 95 TFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLG-MFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDL 173 (268)
Q Consensus 95 ~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG-~f~~l~~L~~a~~v~el~~~vL~~Tp~~~~~~~~l~~~~~ 173 (268)
.|++++..+|+|+|||.+|||+.+|++.+++...++|+| .+..+..|..++|++|++.. |.||||+++++++.+ ++
T Consensus 81 ~~~~~~~~r~ei~nik~ilr~~~~g~~~~~~~~~l~~~g~~~~~l~~l~~~~~~~e~~~~-L~~t~y~~~l~~~~~--~~ 157 (337)
T PF01992_consen 81 EFLDAYLMRYEIHNIKTILRAKLSGRDLEEILELLIPLGFSFEDLKELLSAKDVEELIEA-LKGTPYYEVLRQALE--DY 157 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--GGGS---S-SS-HHHHHHHHSSSHHHHHHHH-H-TTT-THHHHHHHHHH--H-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhccccCCChhhHHHHhccCCHHHHHHH-hcCcchHHHHHHHHH--hh
Confidence 999999999999999999999999999999999999999 33358889999999999977 899999999999876 57
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhccccCCCccCHHhHH
Q 024398 174 DDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHE 253 (268)
Q Consensus 174 ~~~~ie~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l~P~~g~L~~~~~~ 253 (268)
+..++..++.+|++.||+++++.+.+.++.+.+++.++++++||+.||+|++|+++++++++++..++|.+|+++++.++
T Consensus 158 ~~~~~~~~~~~l~~~yy~~~~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~~~R~k~~~~~~~~i~~ll~~~g~l~~~~l~ 237 (337)
T PF01992_consen 158 EQQDFFYIEEALDDRYYEDLLKAAKKLSGSEREILRELLGMEIDLTNIKTILRAKKYGLSPEEIKQLLPPGGRLSKDRLK 237 (337)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHH---TSS-HHHHHHHHHHHHHHHHHHHHHTTTS---GGGT-----SS-SS--H-HH
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccCCCCCeeCHHHHH
Confidence 77888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCChHHHhhhC
Q 024398 254 ELAVCEDIDQVCFQF 268 (268)
Q Consensus 254 ~L~~a~~~e~v~~~~ 268 (268)
+|++++|++++.+++
T Consensus 238 ~l~~~~~~~~~~~~l 252 (337)
T PF01992_consen 238 ALAEAEDVEEFLEAL 252 (337)
T ss_dssp HHHHHTT-GGGGGS-
T ss_pred HHHHCCCHHHHHHHH
Confidence 999999999998753
No 4
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=100.00 E-value=1.1e-43 Score=330.60 Aligned_cols=253 Identities=20% Similarity=0.246 Sum_probs=233.1
Q ss_pred CCCchHHHhHHhHhccCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCCCC-CCCHHHHHHHHHHhHHHHHHHHHHhc
Q 024398 11 IHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPS-PLHTTTIVEKCTLKLVDEYKHMLCQA 89 (268)
Q Consensus 11 ~~~gY~~a~VRg~~~~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~~~-~~~~~~Ie~~L~~~L~~~f~~l~~~a 89 (268)
.+|+|++||||||+++||++++|.+|++|+|++|++.+|++|+|++.+++... ..++..||.+|+++++++|+.+.+++
T Consensus 3 ~~Y~~~~arvr~~~~~lL~~~~~~~L~~~~s~~e~~~~L~~t~Y~~~l~~~~~~~~~~~~iE~~L~~~l~~~~~~l~~~~ 82 (343)
T TIGR02923 3 SPYAYPNARVRAMESRLLKEEDFNELLEMRGTDEIVRFLEETDYKKELDELGSKSYGVDLIEHALDANLAKTYEKLFRIS 82 (343)
T ss_pred CCcchHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHhcCCChHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999999999999999999999988654 45799999999999999999999999
Q ss_pred CccHHHHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHhhccCCCCccc--hhHHHhhcCHHHHHHHHhcCCCChhhhhhh
Q 024398 90 TEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSEC 167 (268)
Q Consensus 90 ~~~l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~~--l~~L~~a~~v~el~~~vL~~Tp~~~~~~~~ 167 (268)
+++.++|++.+..+|||+||+.++||+..|++.+++.+.|+|.|.|+. +..+..++|++|+++. |.+|||+++++++
T Consensus 83 ~~~~~~~~~~~~~~~di~Nik~ilR~~~~g~~~~~i~~~l~~~g~~~~~~l~~l~~~~~~~e~~~~-L~~t~y~~~l~~~ 161 (343)
T TIGR02923 83 PGASRDLIRLYLKKWDVWNIKTLIRAKYANASAEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVEA-LEGTPYYGPLQEA 161 (343)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHhccccccCHHHHHHHHcCCCHHHHHHH-cCCCccHHHHHHH
Confidence 999999998888999999999999999999999999999999999985 8999999999999997 8999999999998
Q ss_pred ccccccCCccHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhc-cccCCCc
Q 024398 168 ITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRK-LYSNFGL 246 (268)
Q Consensus 168 l~~~~~~~~~ie~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~-l~P~~g~ 246 (268)
+ . +..++..++..||++||+.+++.++.+++.+..++..+++.++|+.||+|++|+++++++++++.. ++|++..
T Consensus 162 ~-~---~~~~l~~~E~~Ld~~y~~~l~~~~~~~~~~~~~~l~~~~~~eiD~~Nl~~ilr~k~~~~~~e~i~~~li~~g~~ 237 (343)
T TIGR02923 162 L-A---GNGDLSPIENELDRMYYEKLLKYVGSPSDDETKLFTEFIKTEVDIRNLKTLLRLKAAGLSPDEIMPYTIPGGYE 237 (343)
T ss_pred H-h---cCCCHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhccCcccc
Confidence 7 2 235678888889999999999999877777889999999999999999999999999999999865 5664448
Q ss_pred cCHHhHHhhccCCChHHHhhhC
Q 024398 247 LYPYGHEELAVCEDIDQVCFQF 268 (268)
Q Consensus 247 L~~~~~~~L~~a~~~e~v~~~~ 268 (268)
+.++.++.|++|+|++++.+.+
T Consensus 238 l~~~~l~~l~~~~~~~~~~~~l 259 (343)
T TIGR02923 238 LDEEKLAPLAHIESIDEVVSAL 259 (343)
T ss_pred cCHHHHHHHHcCCCHHHHHHHH
Confidence 8999999999999999988753
No 5
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=100.00 E-value=3.8e-42 Score=320.91 Aligned_cols=255 Identities=21% Similarity=0.264 Sum_probs=234.8
Q ss_pred ccCCCchHHHhHHhHhccCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCCCCC-CCHHHHHHHHHHhHHHHHHHHHH
Q 024398 9 FNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSP-LHTTTIVEKCTLKLVDEYKHMLC 87 (268)
Q Consensus 9 fn~~~gY~~a~VRg~~~~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~~~~-~~~~~Ie~~L~~~L~~~f~~l~~ 87 (268)
...+|+|++||||||+++||++++|.+|++|+|++|++.+|++|+|++.+.+.+.. .|++.||.+|+++++++|..+.+
T Consensus 7 ~~~~y~~~~~rira~~~~lL~~~~~~~L~~~~s~~e~~~~L~~t~Y~~~l~~~~~~~~~~~~~E~~L~~~l~~~~~~l~~ 86 (352)
T PRK01198 7 DSAPYAYVNARVRVREAKLLDREKYERLLEMKSLEEIIRFLEETEYKEEIDELGSRYSGPDLIEKALNRNLAKTYELLLE 86 (352)
T ss_pred CCCCCcchHHHHHHHHHccCCHHHHHHHHhCCCHHHHHHHHhcCCcHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999987663 47999999999999999999999
Q ss_pred hcCccHHHHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHhhccCCCCcc--chhHHHhhcCHHHHHHHHhcCCCChhhhh
Q 024398 88 QATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFS 165 (268)
Q Consensus 88 ~a~~~l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~--~l~~L~~a~~v~el~~~vL~~Tp~~~~~~ 165 (268)
+++++.+.|++++..+|||+||+.++||+..|++.+++.+.++|.|.++ .+..+..++|++|+++. |.+|||+++++
T Consensus 87 ~~~~~~~~~~~~~~~~~di~NIk~ilr~~~~g~~~~~i~~~l~~~g~l~~~~l~~l~~~~~~~e~~~~-L~~T~Y~~~l~ 165 (352)
T PRK01198 87 ISPGRLKELVDVYLRKWDIHNIKTLLRGKILGLDAEEIEELLIPAGELDLEKLKELLEAKSVEEIVKI-LEGTEYYEVLE 165 (352)
T ss_pred HCcchHHHHHHHHHHHHhHHHHHHHHHHHHhCCChHHhhhheeeCCcCCHHHHHHHHhCCCHHHHHHH-hcCCchHHHHH
Confidence 9999999999999999999999999999999999999999999999998 59999999999999997 89999999999
Q ss_pred hhcccccc-CCccHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhccccCC
Q 024398 166 ECITSEDL-DDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNF 244 (268)
Q Consensus 166 ~~l~~~~~-~~~~ie~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l~P~~ 244 (268)
++... + +..++..++..||++||+++++.+ +.++.+.+.+.++++.++|..||+|++|++..+++++.+..+++.+
T Consensus 166 ~~~~~--~~~~~~~~~~E~~Ld~~~~~~l~~~~-~~~~~~~~~l~~~~~~~iD~~Ni~~ilr~k~~~~~~e~i~~~li~~ 242 (352)
T PRK01198 166 EALED--YEETGDLQPIENALDKYYYENLLEIA-SPKDIDEKLLLEYVRTEIDITNIKTLLRLKAQGLSADFIEKVLIPG 242 (352)
T ss_pred HHHHH--HhccCCHHHHHHHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHccCC
Confidence 98743 3 236788889999999999999998 5566778899999999999999999999999999999997665557
Q ss_pred CccCHHhHHhhccCCChHHHhhhC
Q 024398 245 GLLYPYGHEELAVCEDIDQVCFQF 268 (268)
Q Consensus 245 g~L~~~~~~~L~~a~~~e~v~~~~ 268 (268)
|+++++.+++|+ ++|++++.+.+
T Consensus 243 g~i~~~~l~~l~-~~~~~~~~~~L 265 (352)
T PRK01198 243 GSLDEEKLKELL-AEDIEELVSAL 265 (352)
T ss_pred CCcCHHHHHHHh-cCCHHHHHHHH
Confidence 899999999999 99999987653
No 6
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=99.90 E-value=2.7e-22 Score=187.22 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=183.1
Q ss_pred cCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCC----CCCCCHHHHHHHHHHhHHHHHHHHHHhcCccHHHHHHHHh
Q 024398 26 GLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNE----PSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYIT 101 (268)
Q Consensus 26 ~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~----~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~~~l~~fl~~l~ 101 (268)
|-++.+++.+|+++++++|+..+|++|.|++.+.+. ....++..+|.+|.+.+...+..+.+..+.+...+.+|+.
T Consensus 132 g~l~~~~l~~l~~~~~~~e~~~~L~~T~Y~~~l~~~~~~~~~~~~~~~~E~~Ld~~~~~~l~~~~~~~~~~~~~l~~~~~ 211 (352)
T PRK01198 132 GELDLEKLKELLEAKSVEEIVKILEGTEYYEVLEEALEDYEETGDLQPIENALDKYYYENLLEIASPKDIDEKLLLEYVR 211 (352)
T ss_pred CcCCHHHHHHHHhCCCHHHHHHHhcCCchHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence 557889999999999999999999999999998653 1235789999999999988888777665677788889999
Q ss_pred hhhHHHHHHHHHHhhcCCCChHHHHhhccCCCCccc--hhHHHhhcCHHHHHHHHhcCCCChhhhhhhccccccCC-ccH
Q 024398 102 YGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDD-MNI 178 (268)
Q Consensus 102 ~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~~--l~~L~~a~~v~el~~~vL~~Tp~~~~~~~~l~~~~~~~-~~i 178 (268)
.++|++||++++||+..|.+++++...++|.|.++. +.++. ++|++++++. |.+|||++++.+.... +.+ .++
T Consensus 212 ~~iD~~Ni~~ilr~k~~~~~~e~i~~~li~~g~i~~~~l~~l~-~~~~~~~~~~-L~~t~y~~~l~~~~~~--~~~~~~~ 287 (352)
T PRK01198 212 TEIDITNIKTLLRLKAQGLSADFIEKVLIPGGSLDEEKLKELL-AEDIEELVSA-LEGTKYGDVLSEALEE--YEETGSL 287 (352)
T ss_pred HHhhHHHHHHHHHHHHcCCCHHHHHHHccCCCCcCHHHHHHHh-cCCHHHHHHH-HhcCccHHHHHHHHHH--HHccCCH
Confidence 999999999999999999999999999999998874 99999 9999999999 7999999999987633 433 467
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhcc
Q 024398 179 EIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240 (268)
Q Consensus 179 e~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l 240 (268)
..+|..+|++|++...+.++........++..++..|+|++||.+|++++.+++++++++.+
T Consensus 288 ~~~E~~~d~~~~~~~~~~~~~~~~~~~~~l~yl~~~e~Ei~NL~~I~~gk~~~~~~e~I~~~ 349 (352)
T PRK01198 288 SVFEKALDNYLLEYMKKLSKRYPFSVEPILGYILAKEREVKNLRIIARGKENGLSPEEIRER 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 78888899999999987666534445779999999999999999999999999999998653
No 7
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=99.79 E-value=1.9e-17 Score=154.24 Aligned_cols=212 Identities=16% Similarity=0.202 Sum_probs=174.7
Q ss_pred ccCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCC-CCCCCHHHHHHHHHHhHHHHHHHHHHhcCccHH-HHHHHHhh
Q 024398 25 AGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNE-PSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLS-TFLEYITY 102 (268)
Q Consensus 25 ~~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~-~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~~~l~-~fl~~l~~ 102 (268)
.|-++..+..+|+++++++|+...|++|.|++.+.+. ...-+...||.+|.+.....+.++.+...+... -+-.++..
T Consensus 125 ~g~~~~~~l~~l~~~~~~~e~~~~L~~t~y~~~l~~~~~~~~~l~~~E~~Ld~~y~~~l~~~~~~~~~~~~~~l~~~~~~ 204 (343)
T TIGR02923 125 AGEFLEKRIKELAEAKTIEEIVEALEGTPYYGPLQEALAGNGDLSPIENELDRMYYEKLLKYVGSPSDDETKLFTEFIKT 204 (343)
T ss_pred ccccCHHHHHHHHcCCCHHHHHHHcCCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 4566788899999999999999999999999999652 112358899999999999998888764444434 45588889
Q ss_pred hhHHHHHHHHHHhhcCCCChHHHHhhccCCC-Ccc--chhHHHhhcCHHHHHHHHhcCCCChhhhhhhccccccCCccHH
Q 024398 103 GHMIDNVVLIVTGTLHERDVQELLEKCHPLG-MFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIE 179 (268)
Q Consensus 103 ~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG-~f~--~l~~L~~a~~v~el~~~vL~~Tp~~~~~~~~l~~~~~~~~~ie 179 (268)
+.|++|+++++||+..|.+++++...++|.| .++ .+.++..+++++++++. |.+|||++.+.+++.. +..++.
T Consensus 205 eiD~~Nl~~ilr~k~~~~~~e~i~~~li~~g~~l~~~~l~~l~~~~~~~~~~~~-l~~t~y~~~l~~~~~~---~~~~~~ 280 (343)
T TIGR02923 205 EVDIRNLKTLLRLKAAGLSPDEIMPYTIPGGYELDEEKLAPLAHIESIDEVVSA-LDGTKYGEDISEVLSE---EEKSVA 280 (343)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHhhccCcccccCHHHHHHHHcCCCHHHHHHH-HhcCcchHHHHHHHhh---ccCcHH
Confidence 9999999999999999999999999999999 557 48899999999999998 7999999999988741 224566
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhcc
Q 024398 180 IMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240 (268)
Q Consensus 180 ~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l 240 (268)
.+|..++++.++..-+.+....-.-.-++.=+...|...+||.||+.++.+++++++++.+
T Consensus 281 ~~E~~~d~~~~~~~~~~~~~~~~~~~~~~~yl~~ke~Ei~nlr~I~~gk~~~l~~e~I~~~ 341 (343)
T TIGR02923 281 VFERALDEYLIKMATKLSLRYPLSVGPVLGYILKKEREVRNLRAIARGKEEGLPPEEIKEQ 341 (343)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 7777799888877755454422223568899999999999999999999999999998543
No 8
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=99.57 E-value=1.1e-14 Score=135.20 Aligned_cols=210 Identities=15% Similarity=0.199 Sum_probs=145.0
Q ss_pred CCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCCCC---CCCHHHHHHHHHHhHHHHHHHHHHhcCccHHHHH-HHHhhh
Q 024398 28 LTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPS---PLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFL-EYITYG 103 (268)
Q Consensus 28 L~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~~~---~~~~~~Ie~~L~~~L~~~f~~l~~~a~~~l~~fl-~~l~~~ 103 (268)
.+..++.+|..+.+++|+...|++|.|++.+..... ......++..+.+....+.-......++.-++++ +++...
T Consensus 120 ~~~~~l~~l~~~~~~~e~~~~L~~t~y~~~l~~~~~~~~~~~~~~~~~~l~~~yy~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (337)
T PF01992_consen 120 FSFEDLKELLSAKDVEELIEALKGTPYYEVLRQALEDYEQQDFFYIEEALDDRYYEDLLKAAKKLSGSEREILRELLGME 199 (337)
T ss_dssp HHHHHHHHSSSHHHHHHHH-HTTT-THHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---TSS-HHHHHHHHHH
T ss_pred CChhhHHHHhccCCHHHHHHHhcCcchHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 346778899999999999999999999999866322 1245667666777766666555555556655555 899999
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHhhccCCCCccc--hhHHHhhcCHHHHHHHHhcCCCChhhhhhhccccccCCccHHHH
Q 024398 104 HMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIM 181 (268)
Q Consensus 104 ~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~~--l~~L~~a~~v~el~~~vL~~Tp~~~~~~~~l~~~~~~~~~ie~~ 181 (268)
-|+.||..++|++..|.+++++...+.|-|.++. +.++..++|++++++. |.+|+|++.+...... ....++..+
T Consensus 200 iD~~Ni~~~~R~k~~~~~~~~i~~ll~~~g~l~~~~l~~l~~~~~~~~~~~~-l~~t~y~~~~~~~~~~--~~~~~~~~~ 276 (337)
T PF01992_consen 200 IDLTNIKTILRAKKYGLSPEEIKQLLPPGGRLSKDRLKALAEAEDVEEFLEA-LSGTPYGKLLSDAEEE--YEETSLSEL 276 (337)
T ss_dssp HHHHHHHHHHHTTTS---GGGT-----SS-SS--H-HHHHHHHTT-GGGGGS--TTSTTGGGTT--S---------HHHH
T ss_pred HHHHHHHHHHHHhhcCCCHhhhhccCCCCCeeCHHHHHHHHHCCCHHHHHHH-HhcCchHHHHHHhhhh--hhhhhHHHH
Confidence 9999999999999999999999988888888884 8999999999999999 7999999999876432 222256666
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhcc
Q 024398 182 RNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240 (268)
Q Consensus 182 ~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l 240 (268)
|-.++++.++...+.+..-.-.-.-++.=+...|+..+||.+|++++.++++++++..+
T Consensus 277 E~~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ke~Ei~nL~~I~~g~~~gl~~e~I~~~ 335 (337)
T PF01992_consen 277 ERALDRYLLKKALRLSRRSPFSIGPILAYLILKEIEIRNLRTIIEGKRYGLSPEEIRER 335 (337)
T ss_dssp HHHHHHHHHH-HHHGGTT-SSSTHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Confidence 66788888887766655533234668999999999999999999999999999998654
No 9
>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]
Probab=99.42 E-value=1.9e-11 Score=114.98 Aligned_cols=208 Identities=15% Similarity=0.178 Sum_probs=166.9
Q ss_pred HHhHHHHHcCCChHHHHHhcCCCCchhhhc----CCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCccHHHHHHHHhhhhH
Q 024398 30 AADYNNLCQCETLDDIKMHLSATEYGPYLQ----NEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHM 105 (268)
Q Consensus 30 ~~dY~~L~~~~tl~di~~~L~~TdY~~~l~----~~~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~~~l~~fl~~l~~~~~ 105 (268)
.+....+....|++++...+..|.|-..+. +....-+...||-.|.+...+.+.....--.++= .|.+|+...=|
T Consensus 129 ~~~~~~l~~a~t~eev~~~~~~~~y~~~~~~~~~~y~~~~~i~~le~~Ldk~Yye~l~~~~~~~~~~~-~~~~~~~~eID 207 (346)
T COG1527 129 FETLLTLAEAKTMEEVVETLEGTTYLAPLEEALRDYEDTGDIEPLENALDKAYYEDLLRSVNSEKGDE-LLREFLRLEID 207 (346)
T ss_pred HHHHHHHHhhcchHHHHHHHhcCchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcccccchH-HHHHHHHHHHH
Confidence 345667888999999999999988866665 3333467999999999999888877764333321 45567777799
Q ss_pred HHHHHHHHHhhcCCCChHHHHhhccCCCCccc--hhHHHhhcCHHHHHHHHhcCCCChhhhhhhccccccCCcc-HHHHH
Q 024398 106 IDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMN-IEIMR 182 (268)
Q Consensus 106 I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~~--l~~L~~a~~v~el~~~vL~~Tp~~~~~~~~l~~~~~~~~~-ie~~~ 182 (268)
+.|+++++||+..+.+.+.....+.|-|.++. +..|..++++.+++++ +++|+|++.+...... +++.+ +...+
T Consensus 208 ~~Ni~~~lr~k~~~~~~e~~~~li~~gg~l~~~~~~~l~~~ed~~~~~~~-l~~t~yg~~l~~~~~~--~~~~~~~~~~e 284 (346)
T COG1527 208 RRNIKTALRGKASELSEELMESLIPDGGSLDASALRDLAEAEDILDVLEA-LEGTSYGDALSEYREE--YEEGGSIAVFE 284 (346)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHhcCCCccCCHHHHHHHHhcccHHHHHHH-cccCchHHHHHHHHHH--hhcCCchhHHH
Confidence 99999999999988777777777777778884 8899999999999999 7999999999987644 66653 55566
Q ss_pred HHHHHHHHHHHHHHHhh-cCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhcccc
Q 024398 183 NTLYKAYLEDFYKFCQK-LGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYS 242 (268)
Q Consensus 183 ~~Ldk~Y~e~~~~~~~~-l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l~P 242 (268)
..++++++...-.+++. +-|. .-++.-++.-|+-++||+||.+++..++++|.+..+++
T Consensus 285 ~~l~~~~~~~~~~~a~~~p~s~-~~v~~yl~~KE~EV~NLr~Ia~~k~~~~~~e~i~~~~~ 344 (346)
T COG1527 285 EALRKALLKRAKEFAQYYPLSV-GPVLAYLLRKEIEVKNLRWIAEGKANGLPREEIKELLV 344 (346)
T ss_pred HHHHHHHHHHHHHHhhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 66999999999888765 3332 45899999999999999999999999999999876554
No 10
>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion]
Probab=96.43 E-value=0.036 Score=51.44 Aligned_cols=201 Identities=19% Similarity=0.239 Sum_probs=128.6
Q ss_pred CchHHHhHHhHhccCCCHHhHHHHHcC----------------CChHH-HHHhcCCCCchhhhcC----CCC-CCCHHHH
Q 024398 13 GGYLEAIVRGYRAGLLTAADYNNLCQC----------------ETLDD-IKMHLSATEYGPYLQN----EPS-PLHTTTI 70 (268)
Q Consensus 13 ~gY~~a~VRg~~~~lL~~~dY~~L~~~----------------~tl~d-i~~~L~~TdY~~~l~~----~~~-~~~~~~I 70 (268)
|||..--|-=+-.|.|.+.+-.+|.+. .|+.| .-..|-+|+-.+++.+ ++- .++...|
T Consensus 102 y~ymIdNv~lLitgtl~~r~~~ell~kChpLG~F~~l~ai~vA~n~~ely~~vlvdTpla~~F~dc~~~~dld~mniEIi 181 (350)
T KOG2957|consen 102 YGYMIDNVILLITGTLHDRDVGELLEKCHPLGSFDQLEAIKVASNPAELYNAVLVDTPLAPYFEDCLSEEDLDEMNIEII 181 (350)
T ss_pred HHHHHhHHHHHHhccccCCCHHHHHHhcCCcCchhhhhhhhhcCCHHHHHHHHHhcCcchHHHHhhcCHhhhhhhhHHHH
Confidence 555555555555666666666666654 34333 4556788888888876 111 4579999
Q ss_pred HHHHHHhHHHHHHHHHHhcCccHHHHHHHHhhhhHHHHHHHHHH----hh-cCCCChHHHHhhccCCCCccchhHHHhhc
Q 024398 71 VEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVT----GT-LHERDVQELLEKCHPLGMFDSIATLAVAQ 145 (268)
Q Consensus 71 e~~L~~~L~~~f~~l~~~a~~~l~~fl~~l~~~~~I~Nv~~llr----g~-~~~~~~~el~~~~~PlG~f~~l~~L~~a~ 145 (268)
+..|.+...++|-+.++.-+|+-..-|.=+ -+|+.|--...|+ |+ +.+++...+.+.|+.+ .-..+..|+.|+
T Consensus 182 Rn~lYKaylE~fY~fc~~~g~~tae~M~~i-L~fEaDRRai~ItiNs~gteL~~~~R~kL~P~~g~l-yp~~~~~La~ae 259 (350)
T KOG2957|consen 182 RNTLYKAYLEDFYNFCKKLGGATAEVMCEI-LAFEADRRAIIITINSFGTELSKEDRAKLYPNCGKL-YPRGLELLARAE 259 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHH-HhhcccceeEEEehhhcccccChhHHHHhCCCcCcc-ChhHHHHHHhhh
Confidence 999999999999999999999999999555 5777776554444 22 4455555677775433 222599999999
Q ss_pred CHHHHHHHHhcCCCChhhhhhhccccc--cCC--ccHHHHHH---HHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHH
Q 024398 146 NMRELYRLVLVDTPLAPYFSECITSED--LDD--MNIEIMRN---TLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADR 218 (268)
Q Consensus 146 ~v~el~~~vL~~Tp~~~~~~~~l~~~~--~~~--~~ie~~~~---~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~ 218 (268)
+.+++-+.+=.=-+|.+.|.+.-...+ ++. ...|.-.| .+...+|.-||.|.+- -|--.
T Consensus 260 d~e~vk~v~~~~~~Y~~~fd~~~~~g~ktLed~f~e~Ev~~~~~aF~qqfh~gvfyay~Kl--------------KEQEi 325 (350)
T KOG2957|consen 260 DYEQVKNVLSTYYEYKALFDKDGGPGSKTLEDVFYEHEVKLNVLAFLQQFHFGVFYAYMKL--------------KEQEI 325 (350)
T ss_pred hHHHHHHHHHhhhhhHhHhhcCCCCccccHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH--------------HHHHH
Confidence 999998775334566666765422111 111 11222211 2444556666666543 24457
Q ss_pred HHHHHHHHhcC
Q 024398 219 RAVNITINSIG 229 (268)
Q Consensus 219 ~ni~iilns~~ 229 (268)
|||.||--+..
T Consensus 326 RNI~WIAECIa 336 (350)
T KOG2957|consen 326 RNIVWIAECIA 336 (350)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 11
>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function.
Probab=95.19 E-value=0.15 Score=46.96 Aligned_cols=135 Identities=14% Similarity=0.230 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHHhcCccHHHHHHHHhhhhHHHH-HHHHHHhhcCCCChHHHHhhccCCCCccchhHHH
Q 024398 64 PLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDN-VVLIVTGTLHERDVQELLEKCHPLGMFDSIATLA 142 (268)
Q Consensus 64 ~~~~~~Ie~~L~~~L~~~f~~l~~~a~~~l~~fl~~l~~~~~I~N-v~~llrg~~~~~~~~el~~~~~PlG~f~~l~~L~ 142 (268)
++|+..+..-+..+| +..=.+.++++...||+.| ++.+..|+ + ..+|.|.|+.
T Consensus 22 ~~~~~~f~~el~~~l-----------S~~D~~~~~ll~~~~D~~n~l~~l~~~~----~------~~~~~g~~~~----- 75 (271)
T PF10962_consen 22 PYTVAEFKEELYPNL-----------SAKDAKLIDLLYLYFDNENLLRLLWKGE----P------APDPRGNYSE----- 75 (271)
T ss_pred cCcHHHHHHHHHHhc-----------CHHHHHHHHHHHHhccHHHHHHHHHcCC----C------CcCcccCcCH-----
Confidence 356666665554443 4445677899999999999 55554443 1 2456787763
Q ss_pred hhcCHHHHHHHHhc----CCCChhhhhhhcccccc--CC-ccHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhH
Q 024398 143 VAQNMRELYRLVLV----DTPLAPYFSECITSEDL--DD-MNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFE 215 (268)
Q Consensus 143 ~a~~v~el~~~vL~----~Tp~~~~~~~~l~~~~~--~~-~~ie~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~e 215 (268)
+.+++.+.++-. +.-+-.|+.+++.. + .+ -+--..++.|-..||+.. .+. ....+++++.++
T Consensus 76 --~el~~~~~~~~~~~~~~~~lP~y~~~Fl~~--y~~~~~e~~~~~e~~L~~~yy~~~----~~~---~n~Fl~~~~~F~ 144 (271)
T PF10962_consen 76 --EELEELIKAQKEGDEPDKGLPSYLKDFLED--YLNEEAEERIRHEDRLVAAYYAYA----MKS---SNPFLREWFEFN 144 (271)
T ss_pred --HHHHHHHHHHHhcccccccccHHHHHHHHH--HcccchhhccchHHHHHHHHHHHH----HHc---cCHHHHHHHHHH
Confidence 234444444322 34677777777643 2 11 222345566777666554 332 234899999999
Q ss_pred HHHHHHHHHHHhcCCCCCHH
Q 024398 216 ADRRAVNITINSIGTELTRD 235 (268)
Q Consensus 216 aD~~ni~iilns~~~~ls~~ 235 (268)
-|.|||-..+|+.+.++++.
T Consensus 145 ~~lRnilaAlr~R~~g~d~~ 164 (271)
T PF10962_consen 145 LELRNILAALRARKLGFDVS 164 (271)
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 99999999999998766544
No 12
>PF12345 DUF3641: Protein of unknown function (DUF3641) ; InterPro: IPR024521 This domain is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. It is found in association with an N-terminal radical_SAM domain (Pfam:PF04055 from PFAM).
Probab=36.09 E-value=82 Score=26.05 Aligned_cols=94 Identities=9% Similarity=0.228 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHhHHHH----HHHHHHhcCccHHHHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHh-hccCCCCc-----
Q 024398 66 HTTTIVEKCTLKLVDE----YKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLE-KCHPLGMF----- 135 (268)
Q Consensus 66 ~~~~Ie~~L~~~L~~~----f~~l~~~a~~~l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~-~~~PlG~f----- 135 (268)
+-..+|+.-++.|.++ |+.|..+++-|++.|.+++..+=..+--.-+|++.++...++.+.= ..+..||=
T Consensus 4 ~Q~~LE~~Yk~~L~~~~GI~Fn~L~titNmPI~RF~~~L~~~g~~~~Ym~lL~~~fNp~~v~~vMCR~~iSV~wdG~lYD 83 (134)
T PF12345_consen 4 PQQALEADYKRELKERFGIVFNNLFTITNMPIGRFGSFLERSGNLEDYMELLVDAFNPANVEGVMCRSQISVDWDGYLYD 83 (134)
T ss_pred CHHHHHHHHHHHHHHhcCceecchhhhhcCcHHHHHHHHHHccCHHHHHHHHHHhcCHHHHhhcccccceeECCCCeEeC
Confidence 4556777767777665 7899999999999999999888888888888888888888776532 22334432
Q ss_pred ---cchhHHHh---hcCHHHHHHHHhcCCC
Q 024398 136 ---DSIATLAV---AQNMRELYRLVLVDTP 159 (268)
Q Consensus 136 ---~~l~~L~~---a~~v~el~~~vL~~Tp 159 (268)
.++-.|.. ..++.|+...-+.+.|
T Consensus 84 CDFNQ~l~lp~~~~~~~i~dl~~~~l~~~~ 113 (134)
T PF12345_consen 84 CDFNQMLGLPLSGPRLHISDLLEEDLEGRP 113 (134)
T ss_pred ChhHHHcCCCCCCCCcCHHHHhhcccCCCc
Confidence 22333332 2366666655444444
No 13
>PRK14082 hypothetical protein; Provisional
Probab=33.17 E-value=1.6e+02 Score=21.34 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=41.6
Q ss_pred CHHhHHHHHcCCChHHHHHhcCCCCchhhhcCCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCccHHHHHHHH
Q 024398 29 TAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYI 100 (268)
Q Consensus 29 ~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~~~l~~fl~~l 100 (268)
..+++..++++=+ .-|+-.|+.|+|. .|+++++-+.-++++--+.+ .....-.|.+|+
T Consensus 7 ~~~e~e~ii~~Fe-pkIkKsL~~T~yq----------eREDLeQElk~Ki~eK~~~~---~~~e~PGF~efi 64 (65)
T PRK14082 7 DTEEIEHLIENFS-PMIKKKLSNTSYQ----------EREDLEQELKIKIIEKADML---LCQEVPGFWEFI 64 (65)
T ss_pred hHHHHHHHHHHcc-HHHHHHHhcCChh----------hHHHHHHHHHHHHHHHHHHh---hcccCCcHHHhh
Confidence 3456677888877 7899999999886 48899999998887664433 444444566654
No 14
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=32.20 E-value=26 Score=30.26 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=28.5
Q ss_pred hccCCCCccc----hhHHHhhcCHHHHHHHHhcCCCChhh
Q 024398 128 KCHPLGMFDS----IATLAVAQNMRELYRLVLVDTPLAPY 163 (268)
Q Consensus 128 ~~~PlG~f~~----l~~L~~a~~v~el~~~vL~~Tp~~~~ 163 (268)
.-.|||.|++ +.+=+..++.+||+.+ |..+|..++
T Consensus 78 YANPLaeF~~R~~~Ie~Ws~~~~p~el~~a-ld~~pWr~P 116 (178)
T PF12249_consen 78 YANPLAEFDERNAEIESWSELTDPDELLAA-LDSSPWRAP 116 (178)
T ss_pred hcCchhhHHHHHHHHHHHhccCCHHHHHHH-HHhCCCCCC
Confidence 3579999995 5555578899999999 799998765
No 15
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=26.98 E-value=1.2e+02 Score=29.49 Aligned_cols=64 Identities=5% Similarity=0.141 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcC--ccHHHHHHHHhhhhHHHHHHHHHHhhcCCCChH--HHHhhcc
Q 024398 67 TTTIVEKCTLKLVDEYKHMLCQAT--EPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQ--ELLEKCH 130 (268)
Q Consensus 67 ~~~Ie~~L~~~L~~~f~~l~~~a~--~~l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~--el~~~~~ 130 (268)
...+++.+++++...|+++-.... .+++..++++...=-|.+|+.+|.++-+.+=+. +....|+
T Consensus 109 ~~~~~~li~k~il~~f~kfk~~~~~~~e~e~ImKL~yFteNig~Ik~lm~~~~~~~y~s~C~fvn~Ci 176 (420)
T PTZ00473 109 NYDFEYLIQKNILKNFNKFKKLYENNYELEDIMKLFYFTENVGDIKSLMGAPDNEHYASSCKFVNDCL 176 (420)
T ss_pred HHHHHHHHHHHhhhhHhhcccccccchhHHHHHHHHHHHhhhHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 678899999999999999876433 358999988866667888888888775554433 4444443
No 16
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=25.57 E-value=58 Score=22.10 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCCHHHHh
Q 024398 208 MSDLLAFEADRRAVNITINSIGTELTRDDRR 238 (268)
Q Consensus 208 m~~~l~~eaD~~ni~iilns~~~~ls~~~r~ 238 (268)
|.+++.+..|+..+.+.++-...+++|+...
T Consensus 11 iS~lLntgLd~etL~ici~L~e~GVnPeaLA 41 (48)
T PF12554_consen 11 ISDLLNTGLDRETLSICIELCENGVNPEALA 41 (48)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHCCCCHHHHH
Confidence 7889999999999999999998889998753
No 17
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=22.16 E-value=4.2e+02 Score=21.32 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=71.6
Q ss_pred CCchhhhcCCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCccHHHHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHhhccC
Q 024398 52 TEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHP 131 (268)
Q Consensus 52 TdY~~~l~~~~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~~~l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~~~~P 131 (268)
..|++-.+ +..++..+|+.+-.+.+..-.......++......+-+.+-..+|.+..---+--.+.=++|+...++-
T Consensus 6 ~AY~~~~~---~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~~~~dl~~~~N~LP~eLRa~lis 82 (122)
T PRK12794 6 QAYARAAQ---PTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSIFASDVADPDNPLPIELRARIFN 82 (122)
T ss_pred HHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 34776655 235799999999999999888887775556678888888889999887766666666667799999999
Q ss_pred CCCccchhH---HHhhcCHHHHHH
Q 024398 132 LGMFDSIAT---LAVAQNMRELYR 152 (268)
Q Consensus 132 lG~f~~l~~---L~~a~~v~el~~ 152 (268)
+|.|-...+ +....+++.|++
T Consensus 83 L~~fv~~~t~~v~~~~~~l~~LI~ 106 (122)
T PRK12794 83 LSLFVQKHSSKVLRKPEKLTPLID 106 (122)
T ss_pred HHHHHHHHHHHHHcCcccchHHHH
Confidence 998874222 222336666653
No 18
>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function.
Probab=21.89 E-value=1.3e+02 Score=27.72 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.4
Q ss_pred cCccHHHHH-HHHhhhhHHHHHHHHHHhhcCCCChHHH
Q 024398 89 ATEPLSTFL-EYITYGHMIDNVVLIVTGTLHERDVQEL 125 (268)
Q Consensus 89 a~~~l~~fl-~~l~~~~~I~Nv~~llrg~~~~~~~~el 125 (268)
+....+.|+ +|+..+-++.||..-+|+...|.++...
T Consensus 129 ~~~~~n~Fl~~~~~F~~~lRnilaAlr~R~~g~d~~~~ 166 (271)
T PF10962_consen 129 AMKSSNPFLREWFEFNLELRNILAALRARKLGFDVSKE 166 (271)
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 333456677 7777889999999999999999987753
No 19
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=20.18 E-value=86 Score=21.05 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCCCCHHHHhccccCCCccCH
Q 024398 220 AVNITINSIGTELTRDDRRKLYSNFGLLYP 249 (268)
Q Consensus 220 ni~iilns~~~~ls~~~r~~l~P~~g~L~~ 249 (268)
+|.=.+++-+.++|.| .+.||+.|+|-|
T Consensus 16 ~lleCi~~Ck~dlsaE--sPv~PGn~hlQP 43 (45)
T PF08384_consen 16 NLLECIQACKSDLSAE--SPVFPGNGHLQP 43 (45)
T ss_pred HHHHHHHHccccccCC--CCccCCCcccCC
Confidence 3444566667778888 889999999876
No 20
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.16 E-value=84 Score=18.97 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=12.6
Q ss_pred HhccCCCHHhHHHHH
Q 024398 23 YRAGLLTAADYNNLC 37 (268)
Q Consensus 23 ~~~~lL~~~dY~~L~ 37 (268)
+.+|++|+++|....
T Consensus 12 ~~~G~IseeEy~~~k 26 (31)
T PF09851_consen 12 YDKGEISEEEYEQKK 26 (31)
T ss_pred HHcCCCCHHHHHHHH
Confidence 568999999998765
No 21
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=20.07 E-value=5.3e+02 Score=23.89 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHH-HhcCc---cHHHHHHHHh-----hhhHHHHHHHHHHhhcCCCChHHHHhhccCCCC
Q 024398 64 PLHTTTIVEKCTLKLVDEYKHML-CQATE---PLSTFLEYIT-----YGHMIDNVVLIVTGTLHERDVQELLEKCHPLGM 134 (268)
Q Consensus 64 ~~~~~~Ie~~L~~~L~~~f~~l~-~~a~~---~l~~fl~~l~-----~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~ 134 (268)
++++..-++| +++|.+|..-. .-+.+ ..-.||.++. ..|+-+-+..++.....++...+|... +|.
T Consensus 99 ~is~~vke~A--~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~s---Lgl 173 (290)
T PF07899_consen 99 EISPEVKEEA--KKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCRS---LGL 173 (290)
T ss_pred CCCHHHHHHH--HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHHH---cCc
Confidence 4456665555 46888888777 33322 3566776652 356666666666666666666666333 665
Q ss_pred ccchhHHHhhcCHHHHHHHHhcCCCChhhhhhhccccccCCcc-HHHHHHHHHHHHHHHHHHHHhh--cCCchHHHHHHH
Q 024398 135 FDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMN-IEIMRNTLYKAYLEDFYKFCQK--LGGATAEIMSDL 211 (268)
Q Consensus 135 f~~l~~L~~a~~v~el~~~vL~~Tp~~~~~~~~l~~~~~~~~~-ie~~~~~Ldk~Y~e~~~~~~~~--l~~~~~~im~~~ 211 (268)
=++ |.|+++. |++. ++++..+--.-.+...+ +.+. .|-|.|+++.=+..+. -++.+.....+.
T Consensus 174 ~~k---------~~d~V~~-LI~~--g~~ieAv~fi~~f~L~dkfpPv--~lLk~yl~~~k~~~~~~~~~~~~~~a~~ea 239 (290)
T PF07899_consen 174 SDK---------MPDIVEK-LIKK--GKQIEAVRFIYAFGLVDKFPPV--PLLKSYLEDSKKAAKRIRKKGNSSEAQNEA 239 (290)
T ss_pred hhh---------hHHHHHH-HHHC--CCccchHHHHHHHcCCCCCCCH--HHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 444 4666666 4444 44443332222233322 2232 2668888887555543 222222344444
Q ss_pred HhhHHHHHHHHHHHHhcC-CCCC
Q 024398 212 LAFEADRRAVNITINSIG-TELT 233 (268)
Q Consensus 212 l~~eaD~~ni~iilns~~-~~ls 233 (268)
.+=.+..++-+++.+. ++|.
T Consensus 240 --~~kel~aL~~vikcIee~kLe 260 (290)
T PF07899_consen 240 --NEKELAALKSVIKCIEEHKLE 260 (290)
T ss_pred --HHHHHHHHHHHHHHHHHhccc
Confidence 4445566777777765 5443
Done!