Query 024398
Match_columns 268
No_of_seqs 112 out of 279
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 07:35:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9m_A V-type ATP synthase sub 100.0 9.2E-48 3.2E-52 353.5 21.2 237 12-267 4-243 (323)
2 1v9m_A V-type ATP synthase sub 99.4 2E-12 7E-17 118.0 15.5 196 26-240 117-319 (323)
3 2jby_A M11L protein; apoptosis 47.5 47 0.0016 26.1 6.1 81 73-167 49-135 (145)
4 3bjv_A RMPA; alpha/beta three 26.5 12 0.00041 29.6 -0.3 38 25-62 120-158 (161)
5 1k8k_G P16, ARP2/3 complex 16 20.0 3.4E+02 0.012 21.7 8.8 91 137-229 41-146 (151)
6 2oqt_A Hypothetical protein SP 19.8 15 0.0005 29.2 -1.1 36 26-61 122-158 (162)
7 4b0z_A RPN12, 26S proteasome r 19.5 1E+02 0.0035 26.0 4.1 91 37-128 108-199 (229)
8 4afl_A P29ING4, inhibitor of g 15.7 2.8E+02 0.0097 20.0 5.4 57 188-252 4-60 (104)
9 1b0n_B Protein (SINI protein); 13.1 57 0.002 21.9 0.7 28 214-241 9-36 (57)
10 1ekr_A Molybdenum cofactor bio 11.4 53 0.0018 26.8 0.1 22 113-134 60-81 (161)
No 1
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=100.00 E-value=9.2e-48 Score=353.54 Aligned_cols=237 Identities=17% Similarity=0.154 Sum_probs=211.5
Q ss_pred CCchHHHhHHhHhccCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCc
Q 024398 12 HGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATE 91 (268)
Q Consensus 12 ~~gY~~a~VRg~~~~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~~ 91 (268)
+|||++||||||+++||++++|.+|++ +|++|++.+|++|+||+++++.+ ++.||.+|+++++++|+++++++++
T Consensus 4 ~y~y~~arvR~~~~~lL~~~~~~~L~~-~sl~e~~~~L~~t~Y~~~l~~~~----~~~iE~~L~~~l~~~~~~l~~~~~~ 78 (323)
T 1v9m_A 4 DFAYLNARVRVRRGTLLKESFFQEALD-LSFADFLRLLSETVYGGELAGQG----LPDVDRAVLRTQAKLVGDLPRLVTG 78 (323)
T ss_dssp -CHHHHHHHHHHHTTSCCHHHHHHHTT-CCHHHHHHHHHTSGGGGGCCCSS----HHHHHHHHHHHHHHHTTTHHHHCCH
T ss_pred cchhHhHHHHHHHHhccCHHHHHHHHh-CCHHHHHHHHhcCchHHHHhhcC----HHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 499999999999999999999999999 99999999999999999998754 7899999999999999999999999
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHhhccCCCCccc--hhHHHhhcCHHHHHHHHhcCCCChhhhhhhcc
Q 024398 92 PLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECIT 169 (268)
Q Consensus 92 ~l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~~--l~~L~~a~~v~el~~~vL~~Tp~~~~~~~~l~ 169 (268)
+.++|+++++++|||+||+.++||+.+|++.+++. |+| |.|+. +.++..++|++|++.. |.+|||++++..+..
T Consensus 79 ~~~~~~~~~~~~~di~Nik~ilr~~~~~~~~~~l~--~~~-g~~~~~~l~~l~~a~~~~el~~~-L~~t~y~~~l~~~~~ 154 (323)
T 1v9m_A 79 EAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVL--LLP-GTLREEVWRQAYEAQDPAGMAQV-LAVPGHPLARALRAV 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCC--CCS-CSSCHHHHHHHHHSSSHHHHHHH-HHTTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc--cCC-CCCCHHHHHHHHhCCCHHHHHHH-HhccccchHHHHHHH
Confidence 99999999999999999999999999999999988 999 99996 9999999999999976 899999988887754
Q ss_pred ccccCCccHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhccccCCCc-cC
Q 024398 170 SEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGL-LY 248 (268)
Q Consensus 170 ~~~~~~~~ie~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l~P~~g~-L~ 248 (268)
. +.+.|++.+++.|||+||+++|++|+++++ ++|+++++++||++||+|++|+++++++ .+. +++.+|+ |+
T Consensus 155 ~--~~~~~~~~~e~~Ldk~y~~~~~~~~~~~~~---~~l~~~~~~~iD~~Ni~~~lr~~~~~~~--i~~-~li~~G~~l~ 226 (323)
T 1v9m_A 155 L--RETQDLARVEALLAKRFFEDVAKAAKGLDQ---PALRDYLALEVDAENLRTAFKLQGSGLA--PDA-FFLKGGRFVD 226 (323)
T ss_dssp H--TTCCCHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHTTTSCCC--GGG-TCCSSCSSCC
T ss_pred H--HHcCCcHHHHHHHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHH-hccCCCCccC
Confidence 2 455589999999999999999999988765 7899999999999999999999998887 444 5555786 99
Q ss_pred HHhHHhhccCCChHHHhhh
Q 024398 249 PYGHEELAVCEDIDQVCFQ 267 (268)
Q Consensus 249 ~~~~~~L~~a~~~e~v~~~ 267 (268)
|++++.|+++++ ++.++
T Consensus 227 ~~~l~~l~~~~~--~~~~~ 243 (323)
T 1v9m_A 227 RVRFARLMEGDY--AVLDE 243 (323)
T ss_dssp HHHHHHHHTTCG--GGGGS
T ss_pred HHHHHHHHhCcH--HHHHH
Confidence 999999999998 66554
No 2
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=99.43 E-value=2e-12 Score=118.04 Aligned_cols=196 Identities=9% Similarity=0.015 Sum_probs=149.4
Q ss_pred cCCCHHhHHHHHcCCChHHHHHhcCCCCchhhhcCC----CCCCCHHHHHHHHHHhHHHHHHHHHHhcCccHHHHHHHHh
Q 024398 26 GLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNE----PSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYIT 101 (268)
Q Consensus 26 ~lL~~~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~----~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~~~l~~fl~~l~ 101 (268)
|-++..+..+|+++++++|+...|++|.|+..++.. ... +...++.+|.+...+.+.+..+..++ ..+-+|+.
T Consensus 117 g~~~~~~l~~l~~a~~~~el~~~L~~t~y~~~l~~~~~~~~~~-~~~~~e~~Ldk~y~~~~~~~~~~~~~--~~l~~~~~ 193 (323)
T 1v9m_A 117 GTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQ-DLARVEALLAKRFFEDVAKAAKGLDQ--PALRDYLA 193 (323)
T ss_dssp CSSCHHHHHHHHHSSSHHHHHHHHHTTTCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHC---------CHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCHHHHHHHHhccccchHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhcCh--HHHHHHHH
Confidence 356778899999999999999999999887655441 222 68899999999999999877665444 33447788
Q ss_pred hhhHHHHHHHHHHhhcCCCChHHHHhhccCCCC-cc--chhHHHhhcCHHHHHHHHhcCCCChhhhhhhccccccCCccH
Q 024398 102 YGHMIDNVVLIVTGTLHERDVQELLEKCHPLGM-FD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNI 178 (268)
Q Consensus 102 ~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~-f~--~l~~L~~a~~v~el~~~vL~~Tp~~~~~~~~l~~~~~~~~~i 178 (268)
.+-|+.|++.++|++..+.+ +...++|.|. ++ .+.+++.+++ ++.+. |.+|||++.+... ++
T Consensus 194 ~~iD~~Ni~~~lr~~~~~~~---i~~~li~~G~~l~~~~l~~l~~~~~--~~~~~-l~~t~Y~~~~~~~---------~~ 258 (323)
T 1v9m_A 194 LEVDAENLRTAFKLQGSGLA---PDAFFLKGGRFVDRVRFARLMEGDY--AVLDE-LSGTPFSGLSGVR---------DL 258 (323)
T ss_dssp HHHHHHHHHHHHHTTTSCCC---GGGTCCSSCSSCCHHHHHHHHTTCG--GGGGS-CTTSTTGGGTTCC---------SH
T ss_pred HHHHHHHHHHHHHHHHcCCC---HHHhccCCCCccCHHHHHHHHhCcH--HHHHH-HcCCCHHHHhccC---------CH
Confidence 89999999999999999986 7788999997 77 4888888888 77777 7999999988553 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhcc
Q 024398 179 EIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240 (268)
Q Consensus 179 e~~~~~Ldk~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l 240 (268)
..+|..+++..++..-+ ...-.-.-.-++.=+..-|...+||.||++++.+++++++++.+
T Consensus 259 ~~~E~~~~~~~~~~~~~-~~~~~f~~~~~~ayl~~kE~Ei~nl~~I~~~~~~~l~~e~i~~~ 319 (323)
T 1v9m_A 259 KALERGLRCVLLKEAKK-GVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEE 319 (323)
T ss_dssp HHHHHHHHHHHHHHHGG-GGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 45555677766665544 32222222557888888999999999999999999999998654
No 3
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=47.55 E-value=47 Score=26.11 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=49.0
Q ss_pred HHHHhHHHHHHHHHHhcCccHHHHHHHHhhhhHHHHHHHHHHhhcCCCChHHHHhhccCCCCccc-hhHHHh-----hcC
Q 024398 73 KCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS-IATLAV-----AQN 146 (268)
Q Consensus 73 ~L~~~L~~~f~~l~~~a~~~l~~fl~~l~~~~~I~Nv~~llrg~~~~~~~~el~~~~~PlG~f~~-l~~L~~-----a~~ 146 (268)
..++..+.+|+.++ .|+.-=.-.|+|+|||..+.-.+....+.-.+.. +..+.- ++.+.. +--
T Consensus 49 ~Ik~~Y~~~fn~l~--------d~m~~di~~YnI~nvkn~l~~~l~D~rPSVkLAt---isLLSiIIkKl~kI~h~d~~~ 117 (145)
T 2jby_A 49 FINETYAKNYDTLY--------DIMERDILSYNIVNIKNTLTFALRDASPSVKLAT---LTLLASVIKKLNKIQHTDAAM 117 (145)
T ss_dssp HHHHHTHHHHHHHH--------HHHHHHHHTTCHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHHHHHHHTTSCCCGGG
T ss_pred HHHHHHHhhHHHHH--------HHHHhhhhhhhHHHHHHHHHHHHhcCCchhHHHH---HHHHHHHHHHHHHhhccHHHH
Confidence 34567788888887 4552122679999999999767777777754444 222221 222221 225
Q ss_pred HHHHHHHHhcCCCChhhhhhh
Q 024398 147 MRELYRLVLVDTPLAPYFSEC 167 (268)
Q Consensus 147 v~el~~~vL~~Tp~~~~~~~~ 167 (268)
.+|+++++ +.++.+.-.+
T Consensus 118 ~~evIn~i---sa~~~~iI~F 135 (145)
T 2jby_A 118 FSEVIDGI---VAEEQQVIGF 135 (145)
T ss_dssp GHHHHHHH---SSSHHHHHHH
T ss_pred HHHHHHHH---hhhhhhhhHH
Confidence 67777776 5555555443
No 4
>3bjv_A RMPA; alpha/beta three layer sandwich, transferase; 2.40A {Streptococcus mutans}
Probab=26.52 E-value=12 Score=29.56 Aligned_cols=38 Identities=18% Similarity=0.424 Sum_probs=28.7
Q ss_pred ccCCCHHh-HHHHHcCCChHHHHHhcCCCCchhhhcCCC
Q 024398 25 AGLLTAAD-YNNLCQCETLDDIKMHLSATEYGPYLQNEP 62 (268)
Q Consensus 25 ~~lL~~~d-Y~~L~~~~tl~di~~~L~~TdY~~~l~~~~ 62 (268)
++++.+++ ..+|.+|.|.+++...|++.+|..++++.+
T Consensus 120 ~~~l~d~~~~~~L~~~~~~~ei~~~l~~~~~~~~~~~~~ 158 (161)
T 3bjv_A 120 IALFELDHSIERLVNCKTPEEVLAMVEESKSSPYLEGLD 158 (161)
T ss_dssp HHHHTSTTHHHHHHTCCSHHHHHHHHHHGGGSGGGCC--
T ss_pred HHHHcCHHHHHHHHhCCCHHHHHHHHHhccCccccccCc
Confidence 44555555 556999999999999998888998887754
No 5
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=20.01 E-value=3.4e+02 Score=21.68 Aligned_cols=91 Identities=13% Similarity=0.147 Sum_probs=58.2
Q ss_pred chhHHHhhcCHHHHHHHHhcCCCChhhh-----------hhhccccccCCccHHHHHHHHHHHHHHHHHHHHhh----cC
Q 024398 137 SIATLAVAQNMRELYRLVLVDTPLAPYF-----------SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQK----LG 201 (268)
Q Consensus 137 ~l~~L~~a~~v~el~~~vL~~Tp~~~~~-----------~~~l~~~~~~~~~ie~~~~~Ldk~Y~e~~~~~~~~----l~ 201 (268)
+..++....+..+-++.+|.+.||+.== -++|.. ++..+|+.+=..|+.-...-+.+|.-+ ..
T Consensus 41 qv~~lL~~g~~~~ALk~~L~~pP~~~k~q~~K~~~~~~Vl~VL~s--iK~sdI~~~v~~L~~e~~D~LMKYiYkGm~~~~ 118 (151)
T 1k8k_G 41 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLIS--FKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHH--SCGGGHHHHHHTSCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHhChhhhhHHHHHHHHhhcCcC
Confidence 4777777888999999999999997522 122222 455566666555666555555555422 34
Q ss_pred CchHHHHHHHHhhHHHHHHHHHHHHhcC
Q 024398 202 GATAEIMSDLLAFEADRRAVNITINSIG 229 (268)
Q Consensus 202 ~~~~~im~~~l~~eaD~~ni~iilns~~ 229 (268)
+....++-.+-.--.+.--+--|+|.+.
T Consensus 119 ~~~~~~LL~WHEKl~~~~G~G~IvRvlt 146 (151)
T 1k8k_G 119 DNSSAVLLQWHEKALAAGGVGSIVRVLT 146 (151)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHhcCCCcEEEEec
Confidence 4445667777776777777777777654
No 6
>2oqt_A Hypothetical protein SPY0176; APC29699, putative PTS IIA domain, streptococcus pyogenes M1 GAS, structural genomics, PSI-2; 2.41A {Streptococcus pyogenes serotype M1}
Probab=19.84 E-value=15 Score=29.16 Aligned_cols=36 Identities=17% Similarity=0.409 Sum_probs=23.4
Q ss_pred cCCCH-HhHHHHHcCCChHHHHHhcCCCCchhhhcCC
Q 024398 26 GLLTA-ADYNNLCQCETLDDIKMHLSATEYGPYLQNE 61 (268)
Q Consensus 26 ~lL~~-~dY~~L~~~~tl~di~~~L~~TdY~~~l~~~ 61 (268)
+++.+ +-..+|.+|.|.+|+...|++.+|..++++.
T Consensus 122 ~~l~d~~~~~~L~~~~~~~ei~~~l~~~~~~~~~~~~ 158 (162)
T 2oqt_A 122 ALFELDNAIERLVACQSPKEVLEMVEESKDSPYLEGM 158 (162)
T ss_dssp HHHTSTTHHHHHHTCCSHHHHHHHHHHHTCC------
T ss_pred HHHcCHHHHHHHHhCCCHHHHHHHHHhCcCccccccC
Confidence 34444 4456699999999999999887888888764
No 7
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=19.52 E-value=1e+02 Score=25.97 Aligned_cols=91 Identities=9% Similarity=0.124 Sum_probs=58.8
Q ss_pred HcCCChHHHHHhcCCCCchhhhcCCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCccH-HHHHHHHhhhhHHHHHHHHHHh
Q 024398 37 CQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPL-STFLEYITYGHMIDNVVLIVTG 115 (268)
Q Consensus 37 ~~~~tl~di~~~L~~TdY~~~l~~~~~~~~~~~Ie~~L~~~L~~~f~~l~~~a~~~l-~~fl~~l~~~~~I~Nv~~llrg 115 (268)
+-++.+.|+-..|+.-.-...+.+.+..-++-.+++++...=+..|-++++.++.+. ..|++.+ ..-.-..+..+|.-
T Consensus 108 L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l-~~~vR~~~l~~i~k 186 (229)
T 4b0z_A 108 LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIV-MSMVRNEIATCAEK 186 (229)
T ss_dssp HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHH-HHHHHHHHHHHHHH
Confidence 345677888877766222222222111125778999999999999999999888775 6777776 44444555566666
Q ss_pred hcCCCChHHHHhh
Q 024398 116 TLHERDVQELLEK 128 (268)
Q Consensus 116 ~~~~~~~~el~~~ 128 (268)
.+..-+..++-..
T Consensus 187 aY~~i~l~~~~~~ 199 (229)
T 4b0z_A 187 VYSEIPLSNATSL 199 (229)
T ss_dssp HCSEEEHHHHHHH
T ss_pred HcCCCCHHHHHHH
Confidence 6666666676666
No 8
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=15.68 E-value=2.8e+02 Score=20.03 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHHHhccccCCCccCHHhH
Q 024398 188 AYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGH 252 (268)
Q Consensus 188 ~Y~e~~~~~~~~l~~~~~~im~~~l~~eaD~~ni~iilns~~~~ls~~~r~~l~P~~g~L~~~~~ 252 (268)
.|+|+|...+..++.+-...+..+ .+.|.+.....=.- .+...+++-..|++.|...
T Consensus 4 ~yledyld~ie~LP~El~r~~~~i--relD~~~~~~~~~i------~~~~~~~~~~~~~~~~~~r 60 (104)
T 4afl_A 4 MYLEHYLDSIENLPFELQRNFQLM--RDLDQRTEDLKAEI------DKLATEYMSSARSLSSEEK 60 (104)
T ss_dssp HHHHHHHHSGGGHHHHHHHHHHHH--HHHHHHHHHHHHHH------HHHHHHHHTCCSCCCHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHH--HHHHHHHHHHHHHH------HHHHHHHHHHCCCCChhhh
Confidence 367777777666666666666666 56665554433210 1122445555555555443
No 9
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=13.12 E-value=57 Score=21.90 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCHHHHhccc
Q 024398 214 FEADRRAVNITINSIGTELTRDDRRKLY 241 (268)
Q Consensus 214 ~eaD~~ni~iilns~~~~ls~~~r~~l~ 241 (268)
.+.|..=++.|.+|+..++|.+|+..++
T Consensus 9 ~~~d~ewl~LI~~Ak~lGlsleEIrefL 36 (57)
T 1b0n_B 9 FELDQEWVELMVEAKEANISPEEIRKYL 36 (57)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567788899999999999999986653
No 10
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, MOCO DE translation; 2.00A {Escherichia coli} SCOP: d.58.21.1 PDB: 1eks_A*
Probab=11.43 E-value=53 Score=26.79 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=16.8
Q ss_pred HHhhcCCCChHHHHhhccCCCC
Q 024398 113 VTGTLHERDVQELLEKCHPLGM 134 (268)
Q Consensus 113 lrg~~~~~~~~el~~~~~PlG~ 134 (268)
+.|++.=+...+|.+.|||+..
T Consensus 60 iAgImaAK~T~~LIPlCHpl~l 81 (161)
T 1ekr_A 60 IAGIQAAKRTWDLIPLCHPLML 81 (161)
T ss_dssp HHHHHHHHTHHHHSTTCCCCCC
T ss_pred HHHHHHHHhhhhhCcccCcCcc
Confidence 3456666668899999999964
Done!