BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024402
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
GN=ESC PE=2 SV=1
Length = 311
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 9/115 (7%)
Query: 156 HVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPAT---------SGGNIT 206
HV+ V+ G D+ + + + ++ R + +L +G++SN +LRQP T GG +T
Sbjct: 116 HVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVT 175
Query: 207 YEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVM 261
GRFEI+SL+G+ + GGLS+ L+ GQ++GG V PL A+ PV +M
Sbjct: 176 LHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILM 230
>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
Length = 632
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 158 ISVAAGEDVGQKI-MLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSL 216
+ + G+D+ Q++ L QQ + +LSA GS+S A+LR +G ++ E R EI++L
Sbjct: 475 LRLFPGQDLKQELERLARQQPLQAGFVLSAVGSLSQATLRLADQTGDHLLSE-RLEILAL 533
Query: 217 SGS 219
SGS
Sbjct: 534 SGS 536
>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab)
GN=glmU PE=3 SV=1
Length = 621
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 158 ISVAAGEDVGQKIMLFMQQSKREI-CILSASGSISNASLRQPATSGGNITYEGRFEIVSL 216
+ + G+D+ Q++ F +Q + +LSA GS+S A+LR + + E R EI++L
Sbjct: 473 LRLLPGQDLKQELERFARQQPLQAGFVLSAVGSLSQATLRLADQTEDYLLSE-RLEILAL 531
Query: 217 SGSYV---------RTDLGGRTGGLSV---CLSSTDGQII 244
SGS D GRT G + CL T +I+
Sbjct: 532 SGSLCPDGVHLHLAVADAQGRTWGGHLRPGCLIYTTAEIV 571
>sp|Q62829|PAK3_RAT Serine/threonine-protein kinase PAK 3 OS=Rattus norvegicus GN=Pak3
PE=1 SV=1
Length = 544
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 87 PRKYGTPEQALAAKKTAAYSNSKGKREQ-----RELHQQQQQLLGSGGSGSSYSGAPGKS 141
P K TP A A + Y N+ +R++ E+ ++ + ++ G Y +
Sbjct: 216 PNKEATPPSAENANSSTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKY------T 269
Query: 142 QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
+ IG G + +A G++V K M QQ K+E+ I
Sbjct: 270 RFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELII 311
>sp|Q61036|PAK3_MOUSE Serine/threonine-protein kinase PAK 3 OS=Mus musculus GN=Pak3 PE=1
SV=2
Length = 559
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 87 PRKYGTPEQALAAKKTAAYSNS-----KGKREQRELHQQQQQLLGSGGSGSSYSGAPGKS 141
P K P A A T Y N+ K K E+ ++ + ++ G Y +
Sbjct: 231 PNKEDIPPSAENANSTTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKY------T 284
Query: 142 QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
+ IG G + +A G++V K M QQ K+E+ I
Sbjct: 285 RFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELII 326
>sp|Q7YQL3|PAK3_PONPY Serine/threonine-protein kinase PAK 3 OS=Pongo pygmaeus GN=PAK3
PE=2 SV=1
Length = 559
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 87 PRKYGTPEQALAAKKTAAYSNS-----KGKREQRELHQQQQQLLGSGGSGSSYSGAPGKS 141
P K TP A A + Y N+ K K E+ ++ + ++ G Y +
Sbjct: 231 PNKEVTPPSAENANSSTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKY------T 284
Query: 142 QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
+ IG G + +A G++V K M QQ K+E+ I
Sbjct: 285 RFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELII 326
>sp|Q7YQL4|PAK3_PANTR Serine/threonine-protein kinase PAK 3 OS=Pan troglodytes GN=PAK3
PE=2 SV=1
Length = 559
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 87 PRKYGTPEQALAAKKTAAYSNS-----KGKREQRELHQQQQQLLGSGGSGSSYSGAPGKS 141
P K TP A A + Y N+ K K E+ ++ + ++ G Y +
Sbjct: 231 PNKEVTPPSAENANSSTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKY------T 284
Query: 142 QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
+ IG G + +A G++V K M QQ K+E+ I
Sbjct: 285 RFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELII 326
>sp|O75914|PAK3_HUMAN Serine/threonine-protein kinase PAK 3 OS=Homo sapiens GN=PAK3 PE=1
SV=2
Length = 559
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 87 PRKYGTPEQALAAKKTAAYSNS-----KGKREQRELHQQQQQLLGSGGSGSSYSGAPGKS 141
P K TP A A + Y N+ K K E+ ++ + ++ G Y +
Sbjct: 231 PNKEVTPPSAENANSSTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKY------T 284
Query: 142 QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
+ IG G + +A G++V K M QQ K+E+ I
Sbjct: 285 RFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELII 326
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,091,010
Number of Sequences: 539616
Number of extensions: 5072733
Number of successful extensions: 37300
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 297
Number of HSP's that attempted gapping in prelim test: 33376
Number of HSP's gapped (non-prelim): 3346
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)