Query 024402
Match_columns 268
No_of_seqs 222 out of 570
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:18:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 100.0 1.2E-30 2.6E-35 212.6 10.6 113 153-266 1-116 (120)
2 COG1661 Predicted DNA-binding 99.9 1E-26 2.2E-31 197.0 13.0 111 151-265 7-120 (141)
3 PF02178 AT_hook: AT hook moti 96.5 0.00092 2E-08 36.1 0.5 11 81-91 1-11 (13)
4 smart00384 AT_hook DNA binding 96.4 0.0015 3.3E-08 41.3 1.3 14 81-94 1-14 (26)
5 PF14621 RFX5_DNA_bdg: RFX5 DN 87.3 0.21 4.6E-06 45.1 0.4 12 79-90 66-77 (219)
6 PF13546 DDE_5: DDE superfamil 81.0 0.85 1.8E-05 41.2 1.5 16 78-93 228-243 (273)
7 COG1710 Uncharacterized protei 78.0 0.99 2.1E-05 38.5 0.9 15 78-92 81-96 (139)
8 COG1777 Predicted transcriptio 58.5 4.1 8.9E-05 37.6 0.7 17 80-96 63-79 (217)
9 PF03306 AAL_decarboxy: Alpha- 54.6 74 0.0016 29.1 8.1 102 159-262 85-198 (220)
10 PF02196 RBD: Raf-like Ras-bin 42.4 1.1E+02 0.0024 22.9 6.2 43 154-198 11-55 (71)
11 TIGR01252 acetolac_decarb alph 39.4 1.6E+02 0.0035 27.3 7.9 82 180-262 107-200 (232)
12 COG3527 AlsD Alpha-acetolactat 37.5 61 0.0013 30.4 4.8 98 162-263 92-203 (234)
13 PF13737 DDE_Tnp_1_5: Transpos 36.3 18 0.00038 30.1 1.0 14 78-91 21-34 (112)
14 cd01817 RGS12_RBD Ubiquitin do 33.4 76 0.0016 24.7 4.0 37 155-191 11-49 (73)
15 smart00455 RBD Raf-like Ras-bi 32.7 97 0.0021 23.2 4.5 35 154-188 10-46 (70)
16 KOG4565 E93 protein involved i 32.1 31 0.00066 31.3 1.9 14 79-92 111-124 (206)
17 cd01760 RBD Ubiquitin-like dom 28.0 1.3E+02 0.0029 22.9 4.6 37 154-190 10-48 (72)
18 PRK11675 LexA regulated protei 24.3 71 0.0015 25.8 2.5 27 152-180 49-75 (90)
19 smart00412 Cu_FIST Copper-Fist 21.9 40 0.00087 23.4 0.6 8 80-87 31-38 (39)
20 PF11906 DUF3426: Protein of u 20.8 2.1E+02 0.0045 23.5 4.8 41 209-249 65-106 (149)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.97 E-value=1.2e-30 Score=212.62 Aligned_cols=113 Identities=29% Similarity=0.394 Sum_probs=100.4
Q ss_pred ceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCC--CCCCceeeeeeeeEEEeeeeeeecCCCCCCc
Q 024402 153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPA--TSGGNITYEGRFEIVSLSGSYVRTDLGGRTG 230 (268)
Q Consensus 153 frphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~--~s~~~~t~eG~fEILSLsGnis~~d~g~~~~ 230 (268)
||+|++||++||||+++|++||+++++++|+|++||+|++|+|++++ ..+...+++|+|||+||+|||+. .+++++.
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~-~~g~~~~ 79 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISP-EDGKPFV 79 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEE-ETTEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEEC-CCCCCcc
Confidence 79999999999999999999999999999999999999999999994 45688999999999999999998 4468999
Q ss_pred ceEEEEeCCCCcEEeeecC-CcceEeccEEEEEEEee
Q 024402 231 GLSVCLSSTDGQIIGGGVG-GPLKAAGPVQVMYKCAI 266 (268)
Q Consensus 231 HLHISLad~dG~V~GGHL~-g~lIaAt~VqVVvgsF~ 266 (268)
|+|++|+|.||+++||||. +.++++.+|+|+..+++
T Consensus 80 HlHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~~~~~~ 116 (120)
T PF03479_consen 80 HLHISLADPDGQVFGGHLLEGTVFATAEVVITELSGI 116 (120)
T ss_dssp EEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEEEETTE
T ss_pred eEEEEEECCCCeEEeeEeCCCEEeEEEEEEEEEecCc
Confidence 9999999999999999999 66667777777776654
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.94 E-value=1e-26 Score=196.99 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=103.4
Q ss_pred CCceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCC---CCCceeeeeeeeEEEeeeeeeecCCCC
Q 024402 151 QGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPAT---SGGNITYEGRFEIVSLSGSYVRTDLGG 227 (268)
Q Consensus 151 ~~frphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~---s~~~~t~eG~fEILSLsGnis~~d~g~ 227 (268)
..-|.|++||++|||+++.|.+||+++++.+++++|||+|++++|+|++. +|.+++++|+|||+||.|||+.++
T Consensus 7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~--- 83 (141)
T COG1661 7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD--- 83 (141)
T ss_pred ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence 34589999999999999999999999999999999999999999999975 368999999999999999999887
Q ss_pred CCcceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEe
Q 024402 228 RTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCA 265 (268)
Q Consensus 228 ~~~HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF 265 (268)
|+.|||++|++++|+++||||.++++.. ++||+|...
T Consensus 84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el 120 (141)
T COG1661 84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIREL 120 (141)
T ss_pred CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEc
Confidence 8999999999999999999999999998 899988654
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=96.50 E-value=0.00092 Score=36.11 Aligned_cols=11 Identities=73% Similarity=1.202 Sum_probs=4.6
Q ss_pred cccCCCCCCCC
Q 024402 81 KKKRGRPRKYG 91 (268)
Q Consensus 81 kkkrGRPrKy~ 91 (268)
+|+||||||+.
T Consensus 1 ~r~RGRP~k~~ 11 (13)
T PF02178_consen 1 KRKRGRPRKNA 11 (13)
T ss_dssp S--SS--TT--
T ss_pred CCcCCCCcccc
Confidence 68999999985
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=96.43 E-value=0.0015 Score=41.35 Aligned_cols=14 Identities=57% Similarity=0.873 Sum_probs=11.7
Q ss_pred cccCCCCCCCCCCC
Q 024402 81 KKKRGRPRKYGTPE 94 (268)
Q Consensus 81 kkkrGRPrKy~~~~ 94 (268)
|||||||||+..+.
T Consensus 1 kRkRGRPrK~~~~~ 14 (26)
T smart00384 1 KRKRGRPRKAPKDX 14 (26)
T ss_pred CCCCCCCCCCCCcc
Confidence 69999999997553
No 5
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=87.26 E-value=0.21 Score=45.06 Aligned_cols=12 Identities=75% Similarity=1.115 Sum_probs=10.6
Q ss_pred cccccCCCCCCC
Q 024402 79 PAKKKRGRPRKY 90 (268)
Q Consensus 79 ~~kkkrGRPrKy 90 (268)
..|||||||||-
T Consensus 66 dAKRKRGRPRKK 77 (219)
T PF14621_consen 66 DAKRKRGRPRKK 77 (219)
T ss_pred hhhhhcCCCccC
Confidence 479999999976
No 6
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=80.99 E-value=0.85 Score=41.24 Aligned_cols=16 Identities=63% Similarity=1.128 Sum_probs=11.7
Q ss_pred ccccccCCCCCCCCCC
Q 024402 78 EPAKKKRGRPRKYGTP 93 (268)
Q Consensus 78 ~~~kkkrGRPrKy~~~ 93 (268)
.+..+|||||||||.-
T Consensus 228 ~~~~~~rGRPr~~g~~ 243 (273)
T PF13546_consen 228 PPPPPKRGRPRKYGRR 243 (273)
T ss_pred cccCCCCCCCCCCCCc
Confidence 3445569999999943
No 7
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.04 E-value=0.99 Score=38.52 Aligned_cols=15 Identities=67% Similarity=1.099 Sum_probs=12.6
Q ss_pred cccc-ccCCCCCCCCC
Q 024402 78 EPAK-KKRGRPRKYGT 92 (268)
Q Consensus 78 ~~~k-kkrGRPrKy~~ 92 (268)
-|+| |-|||||||..
T Consensus 81 IPvk~KgrGrprkyd~ 96 (139)
T COG1710 81 IPVKLKGRGRPRKYDR 96 (139)
T ss_pred eeeeecCCCCCcccch
Confidence 5778 88999999963
No 8
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=58.49 E-value=4.1 Score=37.57 Aligned_cols=17 Identities=47% Similarity=0.667 Sum_probs=12.1
Q ss_pred ccccCCCCCCCCCCCcc
Q 024402 80 AKKKRGRPRKYGTPEQA 96 (268)
Q Consensus 80 ~kkkrGRPrKy~~~~~~ 96 (268)
-|.+|||||||=-...+
T Consensus 63 e~~~Rg~~rKYY~Is~~ 79 (217)
T COG1777 63 EKIPRGRPRKYYMISRN 79 (217)
T ss_pred cccccCCCcceeeccCC
Confidence 47778999999644333
No 9
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=54.59 E-value=74 Score=29.14 Aligned_cols=102 Identities=19% Similarity=0.264 Sum_probs=56.3
Q ss_pred EecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCCC---CC----ceeeeeeeeEEEeeeeee----ecCCCC
Q 024402 159 SVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GG----NITYEGRFEIVSLSGSYV----RTDLGG 227 (268)
Q Consensus 159 rL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~s---~~----~~t~eG~fEILSLsGnis----~~d~g~ 227 (268)
....-++|-+.|.+.....+. ...+-.-|.++++++|-.... |. ...-+-.||.=.+.|++. +.--.+
T Consensus 85 ~~~~~~~l~~~l~~~~~~~N~-f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~~~g 163 (220)
T PF03306_consen 85 SPMSKEELEAKLDELLPSKNL-FYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEYMGG 163 (220)
T ss_dssp EEEEHHHHHHHHHHHSS-TTS--EEEEEEEEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GGGBT
T ss_pred CCCCHHHHHHHHHHhcCCCce-EEEEEEEEEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchhccc
Confidence 334456777777777665444 666677999999999965332 11 111133466666777765 322111
Q ss_pred -CCcceEEEEeCCCCcEEeeecCCcceEeccEEEEE
Q 024402 228 -RTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMY 262 (268)
Q Consensus 228 -~~~HLHISLad~dG~V~GGHL~g~lIaAt~VqVVv 262 (268)
-..++|+-+-+.| +.+||||.+..+-...|+|-.
T Consensus 164 i~v~G~HlHFls~D-r~~GGHvld~~~~~~~v~~~~ 198 (220)
T PF03306_consen 164 INVPGFHLHFLSDD-RTFGGHVLDFELDNGTVEIDV 198 (220)
T ss_dssp TB-CEEEEEEEETT-SS-EEEEEEEEEEEEEEEEEE
T ss_pred cCCceEEEEEecCC-CCCCCCeEEEEeceEEEEEEe
Confidence 2233444444333 678999998888777777654
No 10
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=42.39 E-value=1.1e+02 Score=22.88 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=33.5
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcCc--cEEEEEeeceeeeEEEecC
Q 024402 154 TPHVISVAAGEDVGQKIMLFMQQSKR--EICILSASGSISNASLRQP 198 (268)
Q Consensus 154 rphVIrL~~GEDIve~I~~faq~~~i--a~~IlSaiGAVs~VtLr~~ 198 (268)
+.-++.+.+|+-|-+.|..+|+++++ ..|.+--.| .+-.|-|-
T Consensus 11 q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~--~~k~l~~~ 55 (71)
T PF02196_consen 11 QRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG--EKKPLDWD 55 (71)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE--EEEEE-TT
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC--CCccccCC
Confidence 56789999999999999999999995 588888777 55555553
No 11
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=39.44 E-value=1.6e+02 Score=27.26 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=51.0
Q ss_pred cEEEEEeeceeeeEEEecCCC-C--CCc----eeeeeeeeEEEeeeeee----ecC-CCCCCcceEEEEeCCCCcEEeee
Q 024402 180 EICILSASGSISNASLRQPAT-S--GGN----ITYEGRFEIVSLSGSYV----RTD-LGGRTGGLSVCLSSTDGQIIGGG 247 (268)
Q Consensus 180 a~~IlSaiGAVs~VtLr~~~~-s--~~~----~t~eG~fEILSLsGnis----~~d-~g~~~~HLHISLad~dG~V~GGH 247 (268)
..+-+-.-|.+++++.|-.-. + |.. ..=+-.||+-.+.|++. +.- .+--..++|+-+-+.| +.+|||
T Consensus 107 ~f~Airi~G~F~~v~~Rsvp~Q~kPy~~l~e~~~~Q~~f~~~nv~GTlvGF~sP~~~~gi~v~G~HlHFisdD-r~~GGH 185 (232)
T TIGR01252 107 VFYAIRITGEFPKVQTRTVPKQEKPYPPFVEVVKGQPEFHFDNVTGTIVGFWTPAYAKGINVAGYHLHFISED-RTFGGH 185 (232)
T ss_pred cEEEEEEEEEeceeEEEecCCCCCCCcCHHHHhcCCceEEEeccEEEEEEEecchhccccCCceEEEEEecCC-CCCCcc
Confidence 477888889999999996422 2 211 11133488888888776 221 1112334555555444 567999
Q ss_pred cCCcceEeccEEEEE
Q 024402 248 VGGPLKAAGPVQVMY 262 (268)
Q Consensus 248 L~g~lIaAt~VqVVv 262 (268)
|.+..+....|+|-+
T Consensus 186 Vld~~~~~~~~~i~~ 200 (232)
T TIGR01252 186 VLDYIIDNGTLEIGQ 200 (232)
T ss_pred eeEEEeeeeEEEEee
Confidence 998888777776644
No 12
>COG3527 AlsD Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.52 E-value=61 Score=30.38 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=60.2
Q ss_pred CCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCCC---CC----ceeeeeeeeEEEeeeeee----ecCCCC-CC
Q 024402 162 AGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GG----NITYEGRFEIVSLSGSYV----RTDLGG-RT 229 (268)
Q Consensus 162 ~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~s---~~----~~t~eG~fEILSLsGnis----~~d~g~-~~ 229 (268)
.-||+.+.|..+..-.+. .+-+...|....+..|..-.+ |. ...-.=-||.=...|+|. +...-+ --
T Consensus 92 s~e~~~~~i~~~~~s~Nl-F~aiki~G~F~~v~~R~vp~q~~py~p~~e~~~~QPvf~~Env~GtiVGf~tP~~~~Gl~v 170 (234)
T COG3527 92 SSEDVFSGISGTMDSENL-FYAIKITGIFKYVHVRMVPKQTPPYTPLAEVVKIQPVFEFENVKGTIVGFWTPEYFEGLAV 170 (234)
T ss_pred cHHHHHHHhhcccCCCce-EEEEEEeccccceEEEEEeccCCCCccHhhhhccCCceEEeecCceEEEecChHHhccccc
Confidence 346899999888777775 445566777778877765222 11 111111244444455544 322111 11
Q ss_pred c--ceEEEEeCCCCcEEeeecCCcceEeccEEEEEE
Q 024402 230 G--GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYK 263 (268)
Q Consensus 230 ~--HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvg 263 (268)
. |+|+. .|++.+|||+..-.+-+++|||-..
T Consensus 171 ~GyHlHFi---tDdrtfGGHV~D~~~~~~~veI~~~ 203 (234)
T COG3527 171 AGYHLHFI---TDDRTFGGHVLDFEIENGEVEIGAI 203 (234)
T ss_pred CceEEEEe---ecCccccceEEEEEeeeEEEEEeee
Confidence 2 55554 6889999999999999999998654
No 13
>PF13737 DDE_Tnp_1_5: Transposase DDE domain
Probab=36.27 E-value=18 Score=30.06 Aligned_cols=14 Identities=50% Similarity=1.101 Sum_probs=11.7
Q ss_pred ccccccCCCCCCCC
Q 024402 78 EPAKKKRGRPRKYG 91 (268)
Q Consensus 78 ~~~kkkrGRPrKy~ 91 (268)
++...|||||++|-
T Consensus 21 ~~~~~kRGr~~~yS 34 (112)
T PF13737_consen 21 APPRGKRGRPPRYS 34 (112)
T ss_pred cCCCCCCCCCcccc
Confidence 45678999999994
No 14
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=33.42 E-value=76 Score=24.72 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=29.4
Q ss_pred eEEEEecCCCcHHHHHHHHHHHcCc--cEEEEEeeceee
Q 024402 155 PHVISVAAGEDVGQKIMLFMQQSKR--EICILSASGSIS 191 (268)
Q Consensus 155 phVIrL~~GEDIve~I~~faq~~~i--a~~IlSaiGAVs 191 (268)
.-++.+.+|+-|.+.|+..|+++++ ++|-+.-.|.=.
T Consensus 11 ~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k 49 (73)
T cd01817 11 TTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDK 49 (73)
T ss_pred eEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCc
Confidence 3478999999999999999999995 466666665443
No 15
>smart00455 RBD Raf-like Ras-binding domain.
Probab=32.71 E-value=97 Score=23.24 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=29.7
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcCc--cEEEEEeec
Q 024402 154 TPHVISVAAGEDVGQKIMLFMQQSKR--EICILSASG 188 (268)
Q Consensus 154 rphVIrL~~GEDIve~I~~faq~~~i--a~~IlSaiG 188 (268)
+...+.+.+|+-|.+.|+..|++++. ..|.+.-.|
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 56789999999999999999999996 366666666
No 16
>KOG4565 consensus E93 protein involved in programmed cell death, putative transcription regulator [Transcription]
Probab=32.10 E-value=31 Score=31.33 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=11.7
Q ss_pred cccccCCCCCCCCC
Q 024402 79 PAKKKRGRPRKYGT 92 (268)
Q Consensus 79 ~~kkkrGRPrKy~~ 92 (268)
.-+|||||=|+|..
T Consensus 111 qpRkKRGrYRqYd~ 124 (206)
T KOG4565|consen 111 QPRKKRGRYRQYDK 124 (206)
T ss_pred CccccccchhhhhH
Confidence 45899999999963
No 17
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=28.02 E-value=1.3e+02 Score=22.86 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=30.2
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcCc--cEEEEEeecee
Q 024402 154 TPHVISVAAGEDVGQKIMLFMQQSKR--EICILSASGSI 190 (268)
Q Consensus 154 rphVIrL~~GEDIve~I~~faq~~~i--a~~IlSaiGAV 190 (268)
+.-++.+.+|+-|.+.|+..|+++++ ..|.|--.|.-
T Consensus 10 ~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~ 48 (72)
T cd01760 10 QRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLD 48 (72)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCC
Confidence 45678999999999999999999996 46666666554
No 18
>PRK11675 LexA regulated protein; Provisional
Probab=24.33 E-value=71 Score=25.81 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=21.0
Q ss_pred CceeEEEEecCCCcHHHHHHHHHHHcCcc
Q 024402 152 GFTPHVISVAAGEDVGQKIMLFMQQSKRE 180 (268)
Q Consensus 152 ~frphVIrL~~GEDIve~I~~faq~~~ia 180 (268)
|++. |+|.-.+|++++|.++|+++++.
T Consensus 49 glKR--veVKldedl~ekL~eyAe~~nit 75 (90)
T PRK11675 49 GLKR--VELKLNADLVDALNELAEARNIS 75 (90)
T ss_pred Ccee--EEEEECHHHHHHHHHHHHHcCCC
Confidence 4554 45555689999999999999864
No 19
>smart00412 Cu_FIST Copper-Fist. binds DNA only in present of copper or silver
Probab=21.87 E-value=40 Score=23.43 Aligned_cols=8 Identities=50% Similarity=1.012 Sum_probs=6.2
Q ss_pred ccccCCCC
Q 024402 80 AKKKRGRP 87 (268)
Q Consensus 80 ~kkkrGRP 87 (268)
.=||||||
T Consensus 31 ~i~kkGRP 38 (39)
T smart00412 31 PVRPRGRP 38 (39)
T ss_pred eecCCCCC
Confidence 45788998
No 20
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=20.82 E-value=2.1e+02 Score=23.52 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=32.2
Q ss_pred eeeeEEEeeeeeeecCCC-CCCcceEEEEeCCCCcEEeeecC
Q 024402 209 GRFEIVSLSGSYVRTDLG-GRTGGLSVCLSSTDGQIIGGGVG 249 (268)
Q Consensus 209 G~fEILSLsGnis~~d~g-~~~~HLHISLad~dG~V~GGHL~ 249 (268)
+.-+++-++|.|.+..+. .++..+-++|.|.+|+++.-.+.
T Consensus 65 ~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEE
Confidence 456788888888876543 37899999999999998866555
Done!