Query 024402
Match_columns 268
No_of_seqs 222 out of 570
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3htn_A Putative DNA binding pr 100.0 6.5E-29 2.2E-33 208.6 11.3 122 139-265 4-128 (149)
2 2dt4_A Hypothetical protein PH 100.0 1.3E-28 4.5E-33 204.6 12.5 110 154-266 10-122 (143)
3 2h6l_A Hypothetical protein; N 99.9 5.2E-28 1.8E-32 201.6 11.0 109 154-266 10-121 (146)
4 2p6y_A Hypothetical protein VC 99.9 5.5E-27 1.9E-31 195.2 15.4 108 152-265 1-109 (142)
5 2hx0_A Putative DNA-binding pr 99.9 7.3E-27 2.5E-31 197.1 16.1 112 148-265 13-125 (154)
6 3hwu_A Putative DNA-binding pr 99.9 7.5E-27 2.6E-31 195.4 12.9 110 154-265 13-125 (147)
7 4dyq_A Gene 1 protein; GP1, oc 69.2 1.2 4.1E-05 35.9 0.5 12 80-91 3-14 (140)
8 1xv2_A ALDC, hypothetical prot 48.8 82 0.0028 27.9 8.8 83 179-262 110-204 (237)
9 1t3g_A X-linked interleukin-1 27.6 40 0.0014 27.4 3.0 36 151-186 40-77 (159)
10 2ezd_A High mobility group pro 27.1 25 0.00085 21.5 1.2 10 79-88 3-12 (26)
11 1fyx_A TOLL-like receptor 2; b 23.7 46 0.0016 26.6 2.6 37 151-187 33-71 (149)
12 2j67_A TOLL like receptor 10; 20.2 54 0.0018 27.3 2.4 37 151-187 63-101 (178)
No 1
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.96 E-value=6.5e-29 Score=208.59 Aligned_cols=122 Identities=13% Similarity=0.183 Sum_probs=105.3
Q ss_pred CCcccccCCCCCCCceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCCC---CCceeeeeeeeEEE
Q 024402 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVS 215 (268)
Q Consensus 139 ~k~~~~~~g~~g~~frphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~s---~~~~t~eG~fEILS 215 (268)
+++++...+..| |.|++||++||||+++|++||+++++.+|+|+++|+|++|+|+|++.+ |..++++|+|||+|
T Consensus 4 ~~~~~~~y~~~g---r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~s 80 (149)
T 3htn_A 4 NEKNMYSYKKIG---NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISN 80 (149)
T ss_dssp ---CCEEEEEET---TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEE
T ss_pred CcccEEEEeecC---CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEE
Confidence 344554444444 899999999999999999999999999888899999999999998764 45789999999999
Q ss_pred eeeeeeecCCCCCCcceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEe
Q 024402 216 LSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCA 265 (268)
Q Consensus 216 LsGnis~~d~g~~~~HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF 265 (268)
|+|||+++| ++|+.|||++|+|.||+++||||..+ ++..++||+|..+
T Consensus 81 l~Gti~~~d-G~p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~ 128 (149)
T 3htn_A 81 LTGNISSMN-EQVYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDY 128 (149)
T ss_dssp EEEEEEEET-TEEEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEEC
T ss_pred eEEEEEccC-CCceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEc
Confidence 999999985 58999999999999999999999987 6667889888654
No 2
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.96 E-value=1.3e-28 Score=204.59 Aligned_cols=110 Identities=20% Similarity=0.271 Sum_probs=100.4
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCCC---CCceeeeeeeeEEEeeeeeeecCCCCCCc
Q 024402 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGGRTG 230 (268)
Q Consensus 154 rphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~s---~~~~t~eG~fEILSLsGnis~~d~g~~~~ 230 (268)
++|++||++||||+++|++||+++++.+|+++++|+|++|+|+|++.+ |..++++|+|||+||+|||++.+ ++++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~-g~p~~ 88 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKD-GEPFV 88 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEET-TEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCC-CCcee
Confidence 799999999999999999999999999888899999999999999765 35788999999999999999975 58999
Q ss_pred ceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEee
Q 024402 231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAI 266 (268)
Q Consensus 231 HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF~ 266 (268)
|+|++|+|+||+++||||..++ .+ ++||++..|.
T Consensus 89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~ 122 (143)
T 2dt4_A 89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELK 122 (143)
T ss_dssp EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEE
T ss_pred eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcC
Confidence 9999999999999999999777 55 8888887764
No 3
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.95 E-value=5.2e-28 Score=201.59 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=100.3
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCCCC---CceeeeeeeeEEEeeeeeeecCCCCCCc
Q 024402 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSG---GNITYEGRFEIVSLSGSYVRTDLGGRTG 230 (268)
Q Consensus 154 rphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~s~---~~~t~eG~fEILSLsGnis~~d~g~~~~ 230 (268)
++|++||++||||+++|++||+++++.+|+|+++|+|++++|++++.+. ..++++|+|||+||+|||++.+ ++++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~d-g~p~~ 88 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKD-SKPFC 88 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEET-TEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCC-CCcee
Confidence 6999999999999999999999999987778999999999999997754 5789999999999999999975 58999
Q ss_pred ceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEee
Q 024402 231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCAI 266 (268)
Q Consensus 231 HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF~ 266 (268)
|||++|+ +||+++||||.+++| .++||++.+|.
T Consensus 89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~ 121 (146)
T 2h6l_A 89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLS 121 (146)
T ss_dssp EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECB
T ss_pred eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcC
Confidence 9999999 999999999998886 69999998874
No 4
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.95 E-value=5.5e-27 Score=195.25 Aligned_cols=108 Identities=21% Similarity=0.303 Sum_probs=97.2
Q ss_pred CceeEEEEecCCCcHHHHHHHHHHHcCcc-EEEEEeeceeeeEEEecCCCCCCceeeeeeeeEEEeeeeeeecCCCCCCc
Q 024402 152 GFTPHVISVAAGEDVGQKIMLFMQQSKRE-ICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTG 230 (268)
Q Consensus 152 ~frphVIrL~~GEDIve~I~~faq~~~ia-~~IlSaiGAVs~VtLr~~~~s~~~~t~eG~fEILSLsGnis~~d~g~~~~ 230 (268)
.|++|++||++||||+++|++||+++++. +||++++|+|++++|++|+.+. .++++|+|||+||+|||+++ ..
T Consensus 1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-----~~ 74 (142)
T 2p6y_A 1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-----HC 74 (142)
T ss_dssp CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-----CE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-----CC
Confidence 38999999999999999999999999975 7777999999999999998754 68899999999999999985 37
Q ss_pred ceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEe
Q 024402 231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCA 265 (268)
Q Consensus 231 HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF 265 (268)
|+|++++|+||+++||||.+.++.+.++||++..|
T Consensus 75 HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~ 109 (142)
T 2p6y_A 75 HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY 109 (142)
T ss_dssp EEEEEEECTTSCEEEEEECTTCEECC-EEEEEEEC
T ss_pred EEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEc
Confidence 99999999999999999997666688999999775
No 5
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.95 E-value=7.3e-27 Score=197.05 Aligned_cols=112 Identities=20% Similarity=0.314 Sum_probs=100.7
Q ss_pred CCCCCceeEEEEecCCCcHHHHHHHHHHHcCcc-EEEEEeeceeeeEEEecCCCCCCceeeeeeeeEEEeeeeeeecCCC
Q 024402 148 NLGQGFTPHVISVAAGEDVGQKIMLFMQQSKRE-ICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLG 226 (268)
Q Consensus 148 ~~g~~frphVIrL~~GEDIve~I~~faq~~~ia-~~IlSaiGAVs~VtLr~~~~s~~~~t~eG~fEILSLsGnis~~d~g 226 (268)
+....+++|++||++||||+++|++||+++++. +||++++|+|++|+|+|++.+. .++++|+|||+||+|||+.+
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--- 88 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT--- 88 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence 345688999999999999999999999999975 6777999999999999998755 78899999999999999985
Q ss_pred CCCcceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEe
Q 024402 227 GRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCA 265 (268)
Q Consensus 227 ~~~~HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF 265 (268)
..|||++|+|.||+++||||...+++..++||++..|
T Consensus 89 --~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~ 125 (154)
T 2hx0_A 89 --GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL 125 (154)
T ss_dssp --EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC
T ss_pred --CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEc
Confidence 3799999999999999999997666668899999765
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.94 E-value=7.5e-27 Score=195.44 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=99.8
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeEEEecCCCC---CCceeeeeeeeEEEeeeeeeecCCCCCCc
Q 024402 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGGRTG 230 (268)
Q Consensus 154 rphVIrL~~GEDIve~I~~faq~~~ia~~IlSaiGAVs~VtLr~~~~s---~~~~t~eG~fEILSLsGnis~~d~g~~~~ 230 (268)
+.+++||++||||+++|++||+++++.++++++||++++++|++++.+ |...+++ ++||+||+|||+.+| ++|+.
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~d-G~p~~ 90 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKE-GKPSI 90 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEET-TEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCC-CCceE
Confidence 569999999999999999999999999999999999999999999865 3467788 899999999999876 58999
Q ss_pred ceEEEEeCCCCcEEeeecCCcceEeccEEEEEEEe
Q 024402 231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVMYKCA 265 (268)
Q Consensus 231 HLHISLad~dG~V~GGHL~g~lIaAt~VqVVvgsF 265 (268)
|+|++++|.||+++||||..+.|.+.++||++..+
T Consensus 91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~ 125 (147)
T 3hwu_A 91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY 125 (147)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc
Confidence 99999999999999999998877666899988754
No 7
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=69.23 E-value=1.2 Score=35.91 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=4.6
Q ss_pred ccccCCCCCCCC
Q 024402 80 AKKKRGRPRKYG 91 (268)
Q Consensus 80 ~kkkrGRPrKy~ 91 (268)
.|+|+|||.||-
T Consensus 3 ~~~k~GRPtk~t 14 (140)
T 4dyq_A 3 TEPKAGRPSDYM 14 (140)
T ss_dssp -------CCSCC
T ss_pred CCCCCCCCCCCC
Confidence 489999999995
No 8
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=48.78 E-value=82 Score=27.92 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=49.4
Q ss_pred ccEEEEEeeceeeeEEEecCCCC---CCc----eeeeeeeeEEEeeeeee----ecCC-CCCCcceEEEEeCCCCcEEee
Q 024402 179 REICILSASGSISNASLRQPATS---GGN----ITYEGRFEIVSLSGSYV----RTDL-GGRTGGLSVCLSSTDGQIIGG 246 (268)
Q Consensus 179 ia~~IlSaiGAVs~VtLr~~~~s---~~~----~t~eG~fEILSLsGnis----~~d~-g~~~~HLHISLad~dG~V~GG 246 (268)
-..+.+-.-|.+++|+.|---.. |.. ..-+-.|+.-.+.|+|. +.-- |--..++|+-+-+.| +.+||
T Consensus 110 N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi~v~G~HlHFisdD-r~~GG 188 (237)
T 1xv2_A 110 NLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDE-RAYGG 188 (237)
T ss_dssp TSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCSEEEEEEEETT-SSCEE
T ss_pred ccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhcccCCceeEEEEEcCC-CCCCc
Confidence 34677888999999999965322 211 11122366666666664 3221 112334455555444 44899
Q ss_pred ecCCcceEeccEEEEE
Q 024402 247 GVGGPLKAAGPVQVMY 262 (268)
Q Consensus 247 HL~g~lIaAt~VqVVv 262 (268)
||.+-.+-...+++-.
T Consensus 189 HVldf~~~~~~~~~~~ 204 (237)
T 1xv2_A 189 HVLDFEVDDVVVEIQN 204 (237)
T ss_dssp EEEEEEEEEEEEEEEE
T ss_pred ceEEEEecceEEEEee
Confidence 9998888777777643
No 9
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=27.65 E-value=40 Score=27.43 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=28.8
Q ss_pred CCceeEEE--EecCCCcHHHHHHHHHHHcCccEEEEEe
Q 024402 151 QGFTPHVI--SVAAGEDVGQKIMLFMQQSKREICILSA 186 (268)
Q Consensus 151 ~~frphVI--rL~~GEDIve~I~~faq~~~ia~~IlSa 186 (268)
.+++..+- .+.+|++|.+.|.+..++-.+.++|||-
T Consensus 40 ~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 40 YGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp SCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred CCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 45554432 2679999999999999999999999985
No 10
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=27.10 E-value=25 Score=21.51 Aligned_cols=10 Identities=50% Similarity=1.066 Sum_probs=7.7
Q ss_pred cccccCCCCC
Q 024402 79 PAKKKRGRPR 88 (268)
Q Consensus 79 ~~kkkrGRPr 88 (268)
+.||-||||+
T Consensus 3 tpKrpRgRpk 12 (26)
T 2ezd_A 3 TPKRPRGRPK 12 (26)
T ss_dssp SCCCCSSCCT
T ss_pred CCcCCCCCcC
Confidence 3588888886
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=23.69 E-value=46 Score=26.57 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=30.2
Q ss_pred CCceeEEE--EecCCCcHHHHHHHHHHHcCccEEEEEee
Q 024402 151 QGFTPHVI--SVAAGEDVGQKIMLFMQQSKREICILSAS 187 (268)
Q Consensus 151 ~~frphVI--rL~~GEDIve~I~~faq~~~ia~~IlSai 187 (268)
.+++..+= .+.+|+++.+.|.+-.++-.+.++|||-.
T Consensus 33 ~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 33 PPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp SCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred CCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 46666543 37899999999999999999999999863
No 12
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=20.15 E-value=54 Score=27.28 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=29.4
Q ss_pred CCceeEEE--EecCCCcHHHHHHHHHHHcCccEEEEEee
Q 024402 151 QGFTPHVI--SVAAGEDVGQKIMLFMQQSKREICILSAS 187 (268)
Q Consensus 151 ~~frphVI--rL~~GEDIve~I~~faq~~~ia~~IlSai 187 (268)
.+++..+- .+.+|++|.+.|.+..++-.+.++|||-.
T Consensus 63 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 63 GSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp -CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred CCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 45665542 37899999999999999888999999853
Done!