Query 024405
Match_columns 268
No_of_seqs 142 out of 1479
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1441 Glucose-6-phosphate/ph 100.0 1.7E-35 3.7E-40 248.5 20.6 261 5-268 10-273 (316)
2 PTZ00343 triose or hexose phos 100.0 1.9E-33 4.2E-38 244.5 25.5 256 10-268 47-314 (350)
3 TIGR00817 tpt Tpt phosphate/ph 100.0 3E-32 6.5E-37 233.4 23.8 253 12-268 2-259 (302)
4 KOG1444 Nucleotide-sugar trans 100.0 2.2E-29 4.7E-34 207.3 20.1 264 1-267 1-264 (314)
5 KOG1443 Predicted integral mem 100.0 2.9E-28 6.4E-33 198.1 15.3 262 5-268 9-281 (349)
6 PF08449 UAA: UAA transporter 99.9 6E-24 1.3E-28 181.9 20.4 243 18-267 6-262 (303)
7 KOG1442 GDP-fucose transporter 99.9 3.8E-26 8.3E-31 183.0 5.7 259 8-268 24-293 (347)
8 PLN00411 nodulin MtN21 family 99.9 5.8E-23 1.3E-27 178.4 25.0 252 7-264 8-290 (358)
9 COG5070 VRG4 Nucleotide-sugar 99.9 5.9E-23 1.3E-27 160.2 10.2 246 13-266 7-260 (309)
10 PRK11272 putative DMT superfam 99.9 1.1E-19 2.5E-24 154.8 25.8 239 8-263 4-246 (292)
11 PF06027 DUF914: Eukaryotic pr 99.9 1.8E-19 3.8E-24 153.8 24.1 247 7-261 8-264 (334)
12 TIGR00950 2A78 Carboxylate/Ami 99.9 1.8E-19 3.9E-24 151.1 21.8 221 27-265 4-227 (260)
13 PRK11453 O-acetylserine/cystei 99.8 1.6E-18 3.4E-23 148.3 24.1 236 10-263 6-248 (299)
14 PRK11689 aromatic amino acid e 99.8 1.3E-18 2.7E-23 148.6 22.8 229 10-264 6-249 (295)
15 PRK15430 putative chlorampheni 99.8 1.1E-18 2.4E-23 149.0 21.5 244 1-263 1-246 (296)
16 TIGR00688 rarD rarD protein. T 99.8 4.1E-18 9E-23 142.6 21.9 226 21-263 11-241 (256)
17 PRK10532 threonine and homoser 99.8 8.5E-17 1.8E-21 137.2 25.3 229 11-264 11-243 (293)
18 KOG1581 UDP-galactose transpor 99.8 1.3E-16 2.8E-21 130.6 19.6 253 7-266 9-277 (327)
19 KOG1580 UDP-galactose transpor 99.7 2.2E-18 4.7E-23 135.9 6.1 250 10-266 11-277 (337)
20 KOG2765 Predicted membrane pro 99.7 8.8E-16 1.9E-20 128.9 17.7 254 7-262 9-350 (416)
21 TIGR03340 phn_DUF6 phosphonate 99.7 1.4E-14 3E-19 122.9 21.7 228 23-263 12-244 (281)
22 PF04142 Nuc_sug_transp: Nucle 99.7 2.6E-15 5.7E-20 123.9 15.2 171 76-246 14-201 (244)
23 KOG1582 UDP-galactose transpor 99.6 1.7E-15 3.6E-20 122.0 9.3 243 18-266 49-296 (367)
24 COG0697 RhaT Permeases of the 99.6 2.1E-12 4.7E-17 109.5 26.3 233 14-262 9-247 (292)
25 KOG3912 Predicted integral mem 99.6 2E-13 4.3E-18 110.7 17.0 247 21-267 12-299 (372)
26 KOG2234 Predicted UDP-galactos 99.5 7.4E-12 1.6E-16 105.5 23.2 230 17-246 20-270 (345)
27 PF03151 TPT: Triose-phosphate 99.5 2.5E-13 5.4E-18 104.7 9.0 109 160-268 1-119 (153)
28 KOG1583 UDP-N-acetylglucosamin 99.4 5.6E-13 1.2E-17 107.8 8.2 227 30-266 21-278 (330)
29 PF00892 EamA: EamA-like trans 99.3 2.2E-12 4.7E-17 95.6 6.8 120 25-149 4-124 (126)
30 TIGR00776 RhaT RhaT L-rhamnose 99.3 4.8E-10 1E-14 95.4 20.6 223 13-263 6-245 (290)
31 COG2510 Predicted membrane pro 99.3 2.7E-11 5.8E-16 87.1 9.6 134 15-151 6-139 (140)
32 COG5006 rhtA Threonine/homoser 99.3 1.5E-09 3.2E-14 87.3 18.9 209 30-262 30-242 (292)
33 KOG4510 Permease of the drug/m 99.3 7.2E-13 1.6E-17 106.8 -0.6 228 13-258 40-283 (346)
34 COG2962 RarD Predicted permeas 99.2 5E-09 1.1E-13 86.2 21.6 214 8-241 7-222 (293)
35 KOG2766 Predicted membrane pro 99.2 4.7E-11 1E-15 95.9 6.0 198 8-215 14-219 (336)
36 PF13536 EmrE: Multidrug resis 99.1 1.2E-10 2.6E-15 85.0 6.3 107 48-155 2-110 (113)
37 KOG4314 Predicted carbohydrate 99.1 2.2E-10 4.8E-15 88.6 7.2 182 75-261 49-235 (290)
38 TIGR00950 2A78 Carboxylate/Ami 98.9 5.6E-08 1.2E-12 81.4 14.6 130 13-146 129-259 (260)
39 PF03151 TPT: Triose-phosphate 98.5 5E-06 1.1E-10 63.7 13.3 132 18-150 6-152 (153)
40 PLN00411 nodulin MtN21 family 98.5 3.5E-06 7.5E-11 73.8 13.6 129 22-152 199-329 (358)
41 TIGR00803 nst UDP-galactose tr 98.5 3.7E-07 8E-12 74.7 6.9 160 103-266 2-188 (222)
42 PRK15051 4-amino-4-deoxy-L-ara 98.4 1.6E-06 3.6E-11 62.7 8.6 64 87-150 45-108 (111)
43 PRK11272 putative DMT superfam 98.4 4.6E-06 9.9E-11 71.2 12.4 110 43-153 177-287 (292)
44 PRK10532 threonine and homoser 98.4 1E-05 2.3E-10 69.0 13.6 123 22-151 158-281 (293)
45 TIGR00817 tpt Tpt phosphate/ph 98.3 6.4E-06 1.4E-10 70.6 9.9 134 17-151 150-293 (302)
46 PRK11689 aromatic amino acid e 98.2 3.3E-05 7.1E-10 66.0 12.1 75 77-151 213-287 (295)
47 PRK11453 O-acetylserine/cystei 98.1 7.4E-05 1.6E-09 64.0 13.7 134 18-152 149-288 (299)
48 TIGR03340 phn_DUF6 phosphonate 98.1 1.3E-05 2.8E-10 68.0 7.8 71 78-148 210-280 (281)
49 PTZ00343 triose or hexose phos 98.1 0.00011 2.3E-09 64.4 13.6 135 15-150 197-347 (350)
50 PRK15430 putative chlorampheni 97.9 0.00017 3.7E-09 61.7 11.3 70 82-151 216-285 (296)
51 PF06800 Sugar_transport: Suga 97.9 0.0014 3E-08 54.6 16.0 118 77-198 43-173 (269)
52 TIGR00776 RhaT RhaT L-rhamnose 97.9 0.00021 4.5E-09 61.0 11.4 126 13-150 153-287 (290)
53 PRK02971 4-amino-4-deoxy-L-ara 97.7 7.7E-05 1.7E-09 55.4 5.6 72 82-153 51-124 (129)
54 COG0697 RhaT Permeases of the 97.6 0.0019 4.2E-08 54.4 13.4 77 76-152 211-288 (292)
55 PF08449 UAA: UAA transporter 97.5 0.0016 3.6E-08 55.8 11.7 138 13-151 155-297 (303)
56 PRK10452 multidrug efflux syst 97.4 0.00033 7.2E-09 51.1 5.3 71 82-152 33-104 (120)
57 PRK13499 rhamnose-proton sympo 97.4 0.054 1.2E-06 47.1 19.0 178 76-254 70-284 (345)
58 PF06027 DUF914: Eukaryotic pr 97.3 0.0047 1E-07 53.4 11.6 137 10-153 170-307 (334)
59 PRK09541 emrE multidrug efflux 97.3 0.00073 1.6E-08 48.7 5.6 71 82-152 33-104 (110)
60 COG2962 RarD Predicted permeas 97.2 0.0072 1.6E-07 50.4 11.7 132 17-152 152-284 (293)
61 COG5006 rhtA Threonine/homoser 97.2 0.0055 1.2E-07 50.0 10.4 126 17-148 153-279 (292)
62 PF05653 Mg_trans_NIPA: Magnes 97.2 0.0017 3.6E-08 55.6 8.0 63 88-150 59-121 (300)
63 PRK11431 multidrug efflux syst 97.2 0.0013 2.8E-08 46.9 6.0 70 82-151 32-102 (105)
64 COG2076 EmrE Membrane transpor 97.2 0.00095 2E-08 47.2 5.0 70 82-151 33-103 (106)
65 PRK10650 multidrug efflux syst 97.1 0.0018 4E-08 46.4 6.0 68 82-149 38-106 (109)
66 PF00893 Multi_Drug_Res: Small 96.8 0.006 1.3E-07 42.6 6.7 57 85-141 35-92 (93)
67 PF06800 Sugar_transport: Suga 96.8 0.027 5.7E-07 47.1 11.3 103 39-147 161-267 (269)
68 PF04657 DUF606: Protein of un 96.7 0.066 1.4E-06 40.3 11.8 117 28-148 17-138 (138)
69 TIGR00803 nst UDP-galactose tr 96.5 0.051 1.1E-06 44.3 10.9 64 85-148 158-221 (222)
70 PF00892 EamA: EamA-like trans 96.4 0.0088 1.9E-07 43.5 5.4 87 169-264 1-88 (126)
71 COG2510 Predicted membrane pro 96.1 0.13 2.9E-06 37.7 10.1 88 161-255 5-92 (140)
72 KOG2922 Uncharacterized conser 96.1 0.15 3.2E-06 43.4 11.7 67 85-151 70-136 (335)
73 KOG1441 Glucose-6-phosphate/ph 95.9 0.012 2.5E-07 50.5 4.7 139 11-150 162-306 (316)
74 PF10639 UPF0546: Uncharacteri 95.8 0.02 4.3E-07 41.3 4.8 71 78-149 41-112 (113)
75 TIGR00688 rarD rarD protein. T 95.8 0.11 2.3E-06 43.4 9.9 99 159-262 2-102 (256)
76 PF04142 Nuc_sug_transp: Nucle 95.2 0.97 2.1E-05 37.5 13.3 131 9-141 111-243 (244)
77 PF04657 DUF606: Protein of un 94.8 0.53 1.1E-05 35.4 9.8 94 161-262 3-96 (138)
78 KOG1581 UDP-galactose transpor 94.4 0.59 1.3E-05 39.5 10.0 138 9-148 169-310 (327)
79 KOG4510 Permease of the drug/m 93.8 0.072 1.6E-06 44.1 3.5 74 76-149 250-323 (346)
80 COG4975 GlcU Putative glucose 93.6 0.03 6.5E-07 45.7 1.0 117 76-196 56-185 (288)
81 COG3238 Uncharacterized protei 92.7 3 6.6E-05 31.7 10.5 122 26-150 19-145 (150)
82 KOG1444 Nucleotide-sugar trans 92.5 0.78 1.7E-05 39.0 7.9 137 13-150 158-299 (314)
83 PRK13499 rhamnose-proton sympo 92.3 3.1 6.7E-05 36.4 11.5 68 83-151 264-341 (345)
84 KOG2765 Predicted membrane pro 90.2 1.6 3.4E-05 38.2 7.5 141 8-153 247-392 (416)
85 COG5070 VRG4 Nucleotide-sugar 89.1 2.4 5.1E-05 34.4 7.3 122 17-139 160-284 (309)
86 COG3238 Uncharacterized protei 87.6 7.3 0.00016 29.6 8.8 97 158-261 4-100 (150)
87 KOG1580 UDP-galactose transpor 84.6 0.58 1.3E-05 38.1 1.7 73 77-149 239-311 (337)
88 COG4975 GlcU Putative glucose 80.0 0.58 1.3E-05 38.4 0.1 70 78-147 208-281 (288)
89 PF05297 Herpes_LMP1: Herpesvi 70.2 1.4 3.1E-05 36.8 0.0 108 103-211 47-159 (381)
90 PRK07668 hypothetical protein; 58.1 1.1E+02 0.0024 25.6 11.4 93 5-111 137-231 (254)
91 PF06379 RhaT: L-rhamnose-prot 56.2 1.4E+02 0.003 26.2 9.4 104 77-180 71-194 (344)
92 KOG3912 Predicted integral mem 55.2 1E+02 0.0022 26.3 8.1 130 18-149 183-332 (372)
93 PF02694 UPF0060: Uncharacteri 54.6 13 0.00029 26.3 2.5 45 109-153 61-105 (107)
94 PRK02237 hypothetical protein; 53.5 14 0.00031 26.3 2.5 45 109-153 63-107 (109)
95 PF00909 Ammonium_transp: Ammo 53.2 1.7E+02 0.0037 26.2 15.0 25 233-257 354-378 (399)
96 KOG1442 GDP-fucose transporter 45.5 1.8E+02 0.0039 24.8 8.1 110 41-150 213-326 (347)
97 KOG4831 Unnamed protein [Funct 44.1 27 0.00058 24.8 2.7 70 78-148 52-122 (125)
98 PF04342 DUF486: Protein of un 40.6 1.3E+02 0.0029 21.4 7.2 55 95-149 51-106 (108)
99 COG1742 Uncharacterized conser 38.7 29 0.00063 24.5 2.2 40 114-153 67-106 (109)
100 KOG1582 UDP-galactose transpor 34.1 1.9E+02 0.0041 24.6 6.5 52 102-153 283-334 (367)
101 KOG2234 Predicted UDP-galactos 33.8 3.3E+02 0.0072 23.9 12.1 140 7-150 178-321 (345)
102 PF07857 DUF1632: CEO family ( 30.9 3.2E+02 0.0069 22.9 9.6 101 43-151 27-134 (254)
103 KOG2766 Predicted membrane pro 29.7 3.5E+02 0.0075 22.9 8.4 121 27-153 181-301 (336)
104 KOG1583 UDP-N-acetylglucosamin 29.5 98 0.0021 26.3 4.2 34 21-55 173-206 (330)
105 TIGR02185 Trep_Strep conserved 27.9 3.1E+02 0.0066 21.7 10.7 41 113-153 36-79 (189)
106 PF06123 CreD: Inner membrane 25.1 5.3E+02 0.011 23.5 8.6 59 126-186 318-378 (430)
107 PF07123 PsbW: Photosystem II 24.9 74 0.0016 23.7 2.5 30 155-184 102-131 (138)
108 PF07578 LAB_N: Lipid A Biosyn 24.2 2.2E+02 0.0047 18.7 5.4 37 173-213 15-52 (72)
109 PF02554 CstA: Carbon starvati 23.8 5.2E+02 0.011 23.0 9.9 53 99-151 152-206 (376)
110 COG1113 AnsP Gamma-aminobutyra 23.7 5.5E+02 0.012 23.6 8.1 43 11-57 336-378 (462)
111 COG3169 Uncharacterized protei 23.0 53 0.0011 23.0 1.3 30 120-149 84-113 (116)
112 PRK10666 ammonium transporter; 21.9 6.1E+02 0.013 23.1 18.7 26 233-258 381-406 (428)
113 COG0004 AmtB Ammonia permease 21.7 6E+02 0.013 23.0 13.5 138 114-257 239-381 (409)
114 PF10754 DUF2569: Protein of u 21.6 3.5E+02 0.0075 20.4 5.8 27 157-183 119-145 (149)
115 PRK11715 inner membrane protei 21.0 6.5E+02 0.014 23.0 8.5 73 111-186 304-384 (436)
116 PF09930 DUF2162: Predicted tr 20.5 4.8E+02 0.01 21.4 11.7 76 72-147 95-173 (224)
117 COG4657 RnfA Predicted NADH:ub 20.2 4.2E+02 0.0092 20.6 7.0 43 142-184 115-157 (193)
No 1
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=248.51 Aligned_cols=261 Identities=40% Similarity=0.658 Sum_probs=229.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHH
Q 024405 5 LCTWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFP 84 (268)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
.++++..+...+...|++++++.++.||++++.++|+||.+++..++.++.+..... +..+..+..+.+++.+++.++|
T Consensus 10 ~~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~-~~l~~~~~~~~~~~~~~~~llp 88 (316)
T KOG1441|consen 10 GQLKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVI-KVLKLVPPSKISSKLPLRTLLP 88 (316)
T ss_pred cccchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCCCccccccchHHHHH
Confidence 456788899999999999999999999999998899999999999888888777655 4445566556556789999999
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccccchhHHHHHHH
Q 024405 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAA 164 (268)
Q Consensus 85 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~ 164 (268)
.+++++++..++|.|+++++++++|++|+++|++++++++++.+|+++++.+.+++....|+.+.+.+|.++|+.|.+.+
T Consensus 89 l~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a 168 (316)
T KOG1441|consen 89 LGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISA 168 (316)
T ss_pred HHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh--ccCCCChHHHHHHHhHHHHHHHH-HHHHHhccccccccccCCCCchHHHHHHHHHHHHHH
Q 024405 165 LFGCLATSTKTILAESLL--HSYKFDSINTVYYMAPFATMILS-IPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAF 241 (268)
Q Consensus 165 l~s~~~~a~~~i~~k~~~--~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (268)
+.+.+..++++++.|+++ |+++.|+.+.++|+.+.+.+.++ |.....|+.... ......++...+..+..+ ++++
T Consensus 169 ~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s-v~~f 246 (316)
T KOG1441|consen 169 MISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFV-GFLTAPWFVTFLILLLNS-VLAF 246 (316)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhccccee-eeeccccchhhHHHHHHH-HHHH
Confidence 999999999999999999 57789999999999999999999 877777765441 112222233334444444 9999
Q ss_pred HHHHHHHHHHhccCcchhhhcccccCC
Q 024405 242 CLNFSIFYVIHSTTAVTFNVAGNLKVR 268 (268)
Q Consensus 242 ~~~~~~~~~i~~~sa~t~sv~~~~k~~ 268 (268)
.+|.+.|++++++||+|+++.|++|++
T Consensus 247 ~~Nls~f~~ig~tSalT~~V~g~~K~~ 273 (316)
T KOG1441|consen 247 LLNLSAFLVIGRTSALTYSVAGHMKRI 273 (316)
T ss_pred HHHHHHHHHHcccCchhhhhhccceEE
Confidence 999999999999999999999999984
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=1.9e-33 Score=244.46 Aligned_cols=256 Identities=24% Similarity=0.386 Sum_probs=216.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccC-hhhhhHHHHHHHHH
Q 024405 10 VFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVE-PEDRWRRIFPMSFV 88 (268)
Q Consensus 10 ~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 88 (268)
+++...+++.||.+|+..++.||++++ ++|||++++++|++++.+.+.+.... +.+++++.+ ++++++.+++.|++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~--~~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~ 123 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALN--MLPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLC 123 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999 58999999999999998876555432 334434443 45688999999999
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccccchhHHHHHHHHHHH
Q 024405 89 FCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGC 168 (268)
Q Consensus 89 ~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~ 168 (268)
+...+...+.|+++++++++++++++.|+++++++++++|||++++++.+++++++|+.+.+.+|.++++.|++++++|+
T Consensus 124 ~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~ 203 (350)
T PTZ00343 124 HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSN 203 (350)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHH
Confidence 97777778899999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHhccC-----CCChHHHHHHHhHHHHHHHHHHHHHhcccccc-ccc----cCCCC-chHHHHHHHHHH
Q 024405 169 LATSTKTILAESLLHSY-----KFDSINTVYYMAPFATMILSIPALLLEGSGIM-DWL----STHPS-PWSAFIIIFSSG 237 (268)
Q Consensus 169 ~~~a~~~i~~k~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~----~~~~~-~~~~~~~~~~~~ 237 (268)
+++++|+++.|+.++++ +.++.+...++.+.+.++++|+....|+.... .+. ..... ....+..++.++
T Consensus 204 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~ 283 (350)
T PTZ00343 204 LGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSG 283 (350)
T ss_pred HHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 99999999999988754 36677788888999999999998877653211 110 11111 123455678889
Q ss_pred HHHHHHHHHHHHHHhccCcchhhhcccccCC
Q 024405 238 VLAFCLNFSIFYVIHSTTAVTFNVAGNLKVR 268 (268)
Q Consensus 238 ~~~~~~~~~~~~~i~~~sa~t~sv~~~~k~~ 268 (268)
+..+.+|.+.|.+++++||++.++.+++|++
T Consensus 284 l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V 314 (350)
T PTZ00343 284 VWYYLYNEVAFYCLGKVNQVTHAVANTLKRV 314 (350)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999974
No 3
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=3e-32 Score=233.36 Aligned_cols=253 Identities=26% Similarity=0.411 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHH
Q 024405 12 RSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCI 91 (268)
Q Consensus 12 ~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (268)
+..+.+..|+++|++.++.||++++ ++++|..++++|+.++.+.+.+... .+.+++++. ++++++..++.|++++.
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~--~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~g~~~~~ 77 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLN--VFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKI-SSALLKLLLPVAIVHTI 77 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCC-CHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999998 5899999999999998877655422 222333344 46789999999999999
Q ss_pred HHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccccchhHHHHHHHHHHHHHH
Q 024405 92 NIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLAT 171 (268)
Q Consensus 92 ~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~ 171 (268)
.+.+.|.|++|+++++++++++++|+++++++++++|||++++++.++.++++|+.+...+|.+.+..|+++++++++++
T Consensus 78 ~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~ 157 (302)
T TIGR00817 78 GHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITF 157 (302)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887666677788999999999999
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcccccc--ccccC--CCCchHHHHHHHHHHH-HHHHHHHH
Q 024405 172 STKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIM--DWLST--HPSPWSAFIIIFSSGV-LAFCLNFS 246 (268)
Q Consensus 172 a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~ 246 (268)
++|.++.||..+++++|+.+.+.|++..+.+.+.|+....|+++.. ++... .......+......+. +....|..
T Consensus 158 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (302)
T TIGR00817 158 VSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQV 237 (302)
T ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998875568999999999999999999998877653311 11110 0111122333334443 44556677
Q ss_pred HHHHHhccCcchhhhcccccCC
Q 024405 247 IFYVIHSTTAVTFNVAGNLKVR 268 (268)
Q Consensus 247 ~~~~i~~~sa~t~sv~~~~k~~ 268 (268)
.+.+++++||.+.++.+++|.+
T Consensus 238 ~~~~l~~~sa~t~sv~~~l~pv 259 (302)
T TIGR00817 238 AFMLLGRVSPLTHSVGNCMKRV 259 (302)
T ss_pred HHHHHccCCchHHHHHhhhhhh
Confidence 7899999999999999998864
No 4
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-29 Score=207.31 Aligned_cols=264 Identities=21% Similarity=0.336 Sum_probs=229.5
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhH
Q 024405 1 MEASLCTWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWR 80 (268)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+++....+....+..++.|+.+|+.+++.||++++.++||..+++...|.+.+.+.+... +..|..+.++++ ++..|
T Consensus 1 ~~~~~~~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~l-k~~~lv~~~~l~-~~~~k 78 (314)
T KOG1444|consen 1 MRSDEGSKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVL-KRLGLVNFRPLD-LRTAK 78 (314)
T ss_pred CCccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-HHhceeecCCcC-hHHHH
Confidence 4555666677788999999999999999999999997666666666669999888877654 444555555554 55888
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccccchhHHH
Q 024405 81 RIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFG 160 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G 160 (268)
+++|.++++.++.+.+..+++|+++|.++++|+.+|+++++.+..++|.++++..+.++..+.+|......+|.+++..|
T Consensus 79 k~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~g 158 (314)
T KOG1444|consen 79 KWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRG 158 (314)
T ss_pred HHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHH
Q 024405 161 FCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLA 240 (268)
Q Consensus 161 ~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (268)
+.++....++.+.+.+..||..+..+.+.+++++|+++.+.+.+......+|+.+-.+........+.++..+.++|+++
T Consensus 159 Y~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~g 238 (314)
T KOG1444|consen 159 YSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMG 238 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHH
Confidence 99999999999999999999988888999999999999999999999988876541111222233456789999999999
Q ss_pred HHHHHHHHHHHhccCcchhhhcccccC
Q 024405 241 FCLNFSIFYVIHSTTAVTFNVAGNLKV 267 (268)
Q Consensus 241 ~~~~~~~~~~i~~~sa~t~sv~~~~k~ 267 (268)
++.+|+.++|.+.+|+.|.+++| +|+
T Consensus 239 f~isy~s~~ct~~~SAtT~tivG-~~n 264 (314)
T KOG1444|consen 239 FGISYTSFLCTRVNSATTTTIVG-AKN 264 (314)
T ss_pred HHHHHHHHHHHhhccccceeehh-hhh
Confidence 99999999999999999999999 876
No 5
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.96 E-value=2.9e-28 Score=198.09 Aligned_cols=262 Identities=23% Similarity=0.365 Sum_probs=229.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccChhhhhHH
Q 024405 5 LCTWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLK---PLITVEPEDRWRR 81 (268)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~~~ 81 (268)
+..++++..+..++.||++|.++++.+|+.-. +|+||++++..|..+-.+......+..+.+ .+.+..|++..++
T Consensus 9 ~~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~--~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~ 86 (349)
T KOG1443|consen 9 QFLMNRVLTLALVLLYYFLSIGLTFYFKWLTK--NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRR 86 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHH
Confidence 44678899999999999999999999999887 699999999999998888877665543322 2335667888899
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccccchhHHHH
Q 024405 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGF 161 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~ 161 (268)
..|.++..++...+.|+|+.|++.+.|++.|++.++|+.+++.++.-||+++.-...+.++.+|+.+.+.++.+++..|.
T Consensus 87 ~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf 166 (349)
T KOG1443|consen 87 LAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGF 166 (349)
T ss_pred hhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC---CChHHHHHHHhHHHHHHHHHHHHHhcccccccc----cc-CCCCchHHHHHH
Q 024405 162 CAALFGCLATSTKTILAESLLHSYK---FDSINTVYYMAPFATMILSIPALLLEGSGIMDW----LS-THPSPWSAFIII 233 (268)
Q Consensus 162 ~~~l~s~~~~a~~~i~~k~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~ 233 (268)
.+...+..+.++++.+.|.++++.+ -+|....++..+...+.++|.....|++....+ .. .+...+.....+
T Consensus 167 ~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i 246 (349)
T KOG1443|consen 167 FLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLI 246 (349)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHH
Confidence 9999999999999999999887643 589999999999999999999999998754422 11 122244566778
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcchhhhcccccCC
Q 024405 234 FSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVR 268 (268)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~sa~t~sv~~~~k~~ 268 (268)
.+.|.+++...++.|.++.++|.+|.|++|..|++
T Consensus 247 ~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel 281 (349)
T KOG1443|consen 247 SLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEV 281 (349)
T ss_pred HHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHH
Confidence 99999999999999999999999999999999963
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.93 E-value=6e-24 Score=181.93 Aligned_cols=243 Identities=20% Similarity=0.295 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHHHHh
Q 024405 18 LQWWVFNVTVIITNKWIFQKLDFK-FPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLG 96 (268)
Q Consensus 18 ~~~~~~s~~~~~~~K~~~~~~~f~-~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (268)
...+.......+.+|.+.++.... +|..+++.|+..+.+...+.....+ .+.+++.+++..++.++++.++..+.
T Consensus 6 ~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF08449_consen 6 AGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK----FPKSRKIPLKKYAILSFLFFLASVLS 81 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----ccCCCcChHHHHHHHHHHHHHHHHHH
Confidence 344444445556677777753444 8999999999999988776655433 11224567888899999999999999
Q ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecccc----ch------hHHHHHHHHH
Q 024405 97 NVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL----SF------NMFGFCAALF 166 (268)
Q Consensus 97 ~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~----~~------~~~G~~~~l~ 166 (268)
|.|++|+|.|.+++.|++.|+++++++++++|||++++++.++++..+|+.+....|. +. +..|+++.+.
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~ 161 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLL 161 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876542 11 1249999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHH--hccc-cccccccCCCCchHHHHHHHHHHHHHHHH
Q 024405 167 GCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALL--LEGS-GIMDWLSTHPSPWSAFIIIFSSGVLAFCL 243 (268)
Q Consensus 167 s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (268)
+.+++|.+.++++|..++++.++.+.++|++.++.+...+.... .++. +..+... ..+..+..+.+.++++...
T Consensus 162 sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~---~~p~~~~~l~~~s~~~~~g 238 (303)
T PF08449_consen 162 SLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS---AHPSVLLYLLLFSLTGALG 238 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH---HhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888887 3322 1111111 2344577788888888888
Q ss_pred HHHHHHHHhccCcchhhhcccccC
Q 024405 244 NFSIFYVIHSTTAVTFNVAGNLKV 267 (268)
Q Consensus 244 ~~~~~~~i~~~sa~t~sv~~~~k~ 267 (268)
....+.++++.||++.++++++|-
T Consensus 239 ~~~i~~~~~~~~al~~t~v~t~Rk 262 (303)
T PF08449_consen 239 QFFIFYLIKKFSALTTTIVTTLRK 262 (303)
T ss_pred HHHHHHHHHhcCchhhhhHHHHHH
Confidence 888899999999999999998763
No 7
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.8e-26 Score=183.00 Aligned_cols=259 Identities=18% Similarity=0.274 Sum_probs=219.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHHHHHHHHHHHhhcC----CCcccC-hhhhhH
Q 024405 8 WSVFRSLLAILQWWVFNVTVIITNKWIFQK--LDFKFPLSVSCIHFICSSIGAYLVIKVLKLK----PLITVE-PEDRWR 80 (268)
Q Consensus 8 ~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~--~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~----~~~~~~-~~~~~~ 80 (268)
++.......+..++.+|+++.+.||++++. ...+-|.++++.|+..+..++........+- ..++.+ .-+..+
T Consensus 24 ~n~~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r 103 (347)
T KOG1442|consen 24 ANAKQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATAR 103 (347)
T ss_pred HhhhchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHH
Confidence 345677788899999999999999999985 4477899999999999888877665543222 111111 134668
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc---cchh
Q 024405 81 RIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE---LSFN 157 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~ 157 (268)
.++|.++.+.+++.+.|.+++|++++++.+-++.+.+|+.+++++++|+|-+..-..++.+++.|-.+-.++| .+.+
T Consensus 104 ~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls 183 (347)
T KOG1442|consen 104 QVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLS 183 (347)
T ss_pred hhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999888 5678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccc-cccccccCCCCchHHHHHHHHH
Q 024405 158 MFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGS-GIMDWLSTHPSPWSAFIIIFSS 236 (268)
Q Consensus 158 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 236 (268)
+.|.++++.|.++-|+..++.||.....+-.-+.+++|++..+.++.+|...+.++. ++.++ ++-.+..+|.++.++
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~--~~l~a~~Fw~~mtLs 261 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGF--PHLPAIKFWILMTLS 261 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCc--ccchHHHHHHHHHHH
Confidence 999999999999999999999998776555678899999999999999998887543 22222 233356689999999
Q ss_pred HHHHHHHHHHHHHHHhccCcchhhhcccccCC
Q 024405 237 GVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVR 268 (268)
Q Consensus 237 ~~~~~~~~~~~~~~i~~~sa~t~sv~~~~k~~ 268 (268)
|+++|..|+.+.+.+|.+||+|+.+.|++|++
T Consensus 262 glfgF~mgyvTg~QIK~TSplThnISgTAka~ 293 (347)
T KOG1442|consen 262 GLFGFAMGYVTGWQIKVTSPLTHNISGTAKAA 293 (347)
T ss_pred HHHHHHhhheeeEEEEecccceeeecHhHHHH
Confidence 99999999999999999999999999999964
No 8
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.92 E-value=5.8e-23 Score=178.39 Aligned_cols=252 Identities=12% Similarity=0.114 Sum_probs=188.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHH
Q 024405 7 TWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMS 86 (268)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (268)
+||......++...-+.+.++..+.|..++. +.+ |..+.++|+.++.+++.++...++++++.+...++++......+
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g 85 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLG 85 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence 6667788888888899999999999999986 888 99999999999999888776554322211111244666677677
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHH------hheecCcchhhhhhheeehheeeecc-cc-----
Q 024405 87 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLV------WRKYFDWRIWASLVPIVGGILLTSVT-EL----- 154 (268)
Q Consensus 87 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~------~~e~~~~~~~~~~~l~~~Gv~l~~~~-~~----- 154 (268)
++......+.+.+++|++++.++++.+++|+++++++.++ +|||.+++++++++++++|+.++... +.
T Consensus 86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~ 165 (358)
T PLN00411 86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA 165 (358)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 7665566689999999999999999999999999999999 59999999999999999999976531 10
Q ss_pred ------------------chh-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcccc
Q 024405 155 ------------------SFN-MFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSG 215 (268)
Q Consensus 155 ------------------~~~-~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (268)
..+ ..|+++++.++++||+|.+.+|+..++++ +....+.++...+.+.+.++....|+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~~~ 244 (358)
T PLN00411 166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEKNN 244 (358)
T ss_pred cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 112 45999999999999999999999877643 3446677777877777777777665433
Q ss_pred ccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccc
Q 024405 216 IMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGN 264 (268)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sa~t~sv~~~ 264 (268)
...|... .+... ..+++.++......+..++++++.+|...++..+
T Consensus 245 ~~~~~~~--~~~~~-~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~ 290 (358)
T PLN00411 245 PSVWIIH--FDITL-ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKP 290 (358)
T ss_pred cccceec--cchHH-HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHh
Confidence 3233211 12222 2344455554444445678999999999887654
No 9
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.89 E-value=5.9e-23 Score=160.22 Aligned_cols=246 Identities=18% Similarity=0.328 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHH
Q 024405 13 SLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCIN 92 (268)
Q Consensus 13 ~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (268)
....++.|+..|+.+++.||++++..||+..+.+.+.|...+.+.+.+. ++.|..+ + +..+.|.++|++++....
T Consensus 7 ~~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iL-k~l~~~~---f-R~t~aK~WfpiSfLLv~M 81 (309)
T COG5070 7 ELTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLIL-KFLRLVE---F-RLTKAKKWFPISFLLVVM 81 (309)
T ss_pred cchHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHH-HHHhHhh---e-ehhhhhhhcCHHHHHHHH
Confidence 3456778999999999999999999899999999999999888776543 4333222 2 244778889999999999
Q ss_pred HHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccccc--------hhHHHHHHH
Q 024405 93 IVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELS--------FNMFGFCAA 164 (268)
Q Consensus 93 ~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~--------~~~~G~~~~ 164 (268)
.+....+++|+++|.+++.|+.+.+.++..+..++|.|.+..+..+..+++..-....++|.+ .+ .|++++
T Consensus 82 Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm 160 (309)
T COG5070 82 IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWM 160 (309)
T ss_pred HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEE
Confidence 999999999999999999999999999999999999999999999999998888888877742 23 499999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHHHHHH
Q 024405 165 LFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLN 244 (268)
Q Consensus 165 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (268)
...++..+.+....|+..|-.+....+.++|++..+.++++.+..+.|+++..+..+..+ ...+..++.+|+++++..
T Consensus 161 ~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~--~d~l~am~ISgl~svgiS 238 (309)
T COG5070 161 FTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLS--VDSLMAMFISGLCSVGIS 238 (309)
T ss_pred ehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCC--hHHHHHHHHHHHHHhhhh
Confidence 999999999999999877766678899999999999999999999998765543333222 234678899999999999
Q ss_pred HHHHHHHhccCcchhhhccccc
Q 024405 245 FSIFYVIHSTTAVTFNVAGNLK 266 (268)
Q Consensus 245 ~~~~~~i~~~sa~t~sv~~~~k 266 (268)
|++-||++.+|+.|.|++|.+.
T Consensus 239 y~saWcvrVtSSTtySMvGALN 260 (309)
T COG5070 239 YCSAWCVRVTSSTTYSMVGALN 260 (309)
T ss_pred hccceeEeehhhhHHHHHHHhh
Confidence 9999999999999999999864
No 10
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.87 E-value=1.1e-19 Score=154.83 Aligned_cols=239 Identities=13% Similarity=0.159 Sum_probs=177.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHH
Q 024405 8 WSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSF 87 (268)
Q Consensus 8 ~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (268)
|+..........-.+.+.+.....|+..+ +.+ |..++++|+.++.+++.++...++ ++ .+++++++.....+.
T Consensus 4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~~--~~~-p~~~~~~R~~~a~l~ll~~~~~~~-~~---~~~~~~~~~~~~~g~ 76 (292)
T PRK11272 4 RQLLPLFGALFALYIIWGSTYLVIRIGVE--SWP-PLMMAGVRFLIAGILLLAFLLLRG-HP---LPTLRQWLNAALIGL 76 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhc--cCC-HHHHHHHHHHHHHHHHHHHHHHhC-CC---CCcHHHHHHHHHHHH
Confidence 44455555556666667777777899988 688 999999999999988877655432 22 123556776666776
Q ss_pred HH-HHHHHHhhhhh-cccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecc-ccchhHHHHHHH
Q 024405 88 VF-CINIVLGNVSL-RYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT-ELSFNMFGFCAA 164 (268)
Q Consensus 88 ~~-~~~~~~~~~al-~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~-~~~~~~~G~~~~ 164 (268)
+. .....+.+.+. ++++++.++++.++.|+++.+++.+ +|||++++++.+++++++|+.+...+ +.+.+..|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~ 155 (292)
T PRK11272 77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILI 155 (292)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHH
Confidence 65 56677788888 9999999999999999999999985 69999999999999999999987643 334556899999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHHHHHH
Q 024405 165 LFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLN 244 (268)
Q Consensus 165 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (268)
++++++||.+.+..||..++ ++...+.++...+...+.+.....+++. .. ..+...|..+.+.++.+....
T Consensus 156 l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 156 LIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERL-TA-----LPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred HHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCcc-cc-----cCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999996432 3455667888888888887766544211 01 012234555566666655444
Q ss_pred -HHHHHHHhccCcchhhhcc
Q 024405 245 -FSIFYVIHSTTAVTFNVAG 263 (268)
Q Consensus 245 -~~~~~~i~~~sa~t~sv~~ 263 (268)
...++.+++.++.+.++..
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~ 246 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYA 246 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHH
Confidence 4567899999998887654
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.86 E-value=1.8e-19 Score=153.79 Aligned_cols=247 Identities=16% Similarity=0.217 Sum_probs=177.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcC-CCcccChhhhhHHHHHH
Q 024405 7 TWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLK-PLITVEPEDRWRRIFPM 85 (268)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 85 (268)
.|+-+..+...=.-..+..+....+..+-++ +++.|..-+++-+..-.++-.....+++.+ +..+. .+.+|++.+..
T Consensus 8 ~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~-~~~~~w~y~ll 85 (334)
T PF06027_consen 8 TRRFWIVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKV-LKRPWWKYFLL 85 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhh-cchhHHHHHHH
Confidence 3444444443333334444555566666665 888899888777766555443333332221 11111 23455556668
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecccc---------ch
Q 024405 86 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL---------SF 156 (268)
Q Consensus 86 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~---------~~ 156 (268)
+++...++++.+.|++|++.+.++++.++..+++++++++++|||+++.+++|+.++++|++++...|. +.
T Consensus 86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~ 165 (334)
T PF06027_consen 86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSN 165 (334)
T ss_pred HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999998765431 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHH
Q 024405 157 NMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSS 236 (268)
Q Consensus 157 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (268)
...|+++++.|+++||+++++.|+..|+ .+..+.+....+++.++..+.....|..++.+.. +++.....++..
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~--~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~----w~~~~~~~~v~~ 239 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKK--APRVEFLGMLGLFGFIISGIQLAILERSGIESIH----WTSQVIGLLVGY 239 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccC----CChhhHHHHHHH
Confidence 4799999999999999999999998886 5788899999999999999888888866554321 123333444444
Q ss_pred HHHHHHHHHHHHHHHhccCcchhhh
Q 024405 237 GVLAFCLNFSIFYVIHSTTAVTFNV 261 (268)
Q Consensus 237 ~~~~~~~~~~~~~~i~~~sa~t~sv 261 (268)
+++-+......-..++.+||+..++
T Consensus 240 ~~~lf~~y~l~p~~l~~ssAt~~nL 264 (334)
T PF06027_consen 240 ALCLFLFYSLVPIVLRMSSATFFNL 264 (334)
T ss_pred HHHHHHHHHHHHHHHHhCccceeeh
Confidence 4443443334457789999987665
No 12
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.85 E-value=1.8e-19 Score=151.08 Aligned_cols=221 Identities=13% Similarity=0.061 Sum_probs=167.5
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHH-HHHHHHHHhhhhhcccch
Q 024405 27 VIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSF-VFCINIVLGNVSLRYIPV 105 (268)
Q Consensus 27 ~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~~ 105 (268)
.....|+.+++ +.| |..+.+.|+..+.+.+.+..+. + +++++++.....+. ...+...+.+.|++|+++
T Consensus 4 ~~~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~-~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 4 TGVVIGQYLEG-QVP-LYFAVFRRLIFALLLLLPLLRR-R-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred hHHHHHHHHhc-CCC-HHHHHHHHHHHHHHHHHHHHHh-c-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 34567998875 567 9999999999888877655432 1 12334444555554 458888999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024405 106 SFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE-LSFNMFGFCAALFGCLATSTKTILAESLLHS 184 (268)
Q Consensus 106 ~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~ 184 (268)
+.++++.++.|+++.+++.+++|||+++++++++.++++|+.++..++ .+.+..|+.+++.++++|+.+.+..|+..++
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~ 153 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKK 153 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 999999999999999999999999999999999999999999876443 3456789999999999999999999998776
Q ss_pred CCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHHH-HHHHHHHHHHhccCcchhhhcc
Q 024405 185 YKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAF-CLNFSIFYVIHSTTAVTFNVAG 263 (268)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~sa~t~sv~~ 263 (268)
.+.++.....+.+..+.+.+.+.....++.. .. +...+..+...++++. ......++.+++.++.+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~ 225 (260)
T TIGR00950 154 EGPELLQFTGWVLLLGALLLLPFAWFLGPNP--QA------LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILA 225 (260)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCCC--Cc------chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 5544556666778888888888876654321 11 2233545555555554 4444568999999999988765
Q ss_pred cc
Q 024405 264 NL 265 (268)
Q Consensus 264 ~~ 265 (268)
..
T Consensus 226 ~~ 227 (260)
T TIGR00950 226 LA 227 (260)
T ss_pred HH
Confidence 43
No 13
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.84 E-value=1.6e-18 Score=148.27 Aligned_cols=236 Identities=13% Similarity=0.193 Sum_probs=160.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHH
Q 024405 10 VFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVF 89 (268)
Q Consensus 10 ~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (268)
....+...++|... ....|..++ +++ |..+.++|+.++.+.+.+..+ +++ .+++.....++..
T Consensus 6 ~l~~l~~~~~Wg~~----~~~~k~~~~--~~~-p~~~~~~R~~~a~~~l~~~~~----~~~------~~~~~~~~~g~~~ 68 (299)
T PRK11453 6 GVLALLVVVVWGLN----FVVIKVGLH--NMP-PLMLAGLRFMLVAFPAIFFVA----RPK------VPLNLLLGYGLTI 68 (299)
T ss_pred HHHHHHHHHHHhhh----HHHHHHHHh--cCC-HHHHHHHHHHHHHHHHHHHhc----CCC------CchHHHHHHHHHH
Confidence 34444555555544 445598887 688 999999999987766544321 111 1223344445543
Q ss_pred -HHHHHHhhhhhcc-cchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc---cchhHHHHHHH
Q 024405 90 -CINIVLGNVSLRY-IPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE---LSFNMFGFCAA 164 (268)
Q Consensus 90 -~~~~~~~~~al~~-~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G~~~~ 164 (268)
.+...+.+.+++| .+++.++++.++.|+++.+++++++|||+++++++++++.++|+.++..++ .+.+..|+.++
T Consensus 69 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~ 148 (299)
T PRK11453 69 SFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLT 148 (299)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHH
Confidence 3444566778887 688999999999999999999999999999999999999999999876532 22346799999
Q ss_pred HHHHHHHHHHHHHHHHHhccCC-CChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHHHHH
Q 024405 165 LFGCLATSTKTILAESLLHSYK-FDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCL 243 (268)
Q Consensus 165 l~s~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (268)
+.++++|+.|.+++||..++.+ .+......++...+.+...+.....|++.... .+....++..|..+.+.++.+...
T Consensus 149 l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~i~~t~~ 227 (299)
T PRK11453 149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVTIDMTTILSLMYLAFVATIV 227 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999765432 22334445555555554444444444322110 011122445577777777777766
Q ss_pred HH-HHHHHHhccCcchhhhcc
Q 024405 244 NF-SIFYVIHSTTAVTFNVAG 263 (268)
Q Consensus 244 ~~-~~~~~i~~~sa~t~sv~~ 263 (268)
.+ ..++.+++.+|.+.+...
T Consensus 228 ~~~l~~~~l~~~~a~~~s~~~ 248 (299)
T PRK11453 228 GYGIWGTLLGRYETWRVAPLS 248 (299)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 55 447889999998877654
No 14
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.84 E-value=1.3e-18 Score=148.60 Aligned_cols=229 Identities=14% Similarity=0.134 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHH
Q 024405 10 VFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVF 89 (268)
Q Consensus 10 ~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (268)
....+..+++|.. .....|..++ ++| |..+.++|+.++.+++.+.. + ++ +. ++++++..+..++.+
T Consensus 6 ~l~~l~a~~~Wg~----~~~~~k~~~~--~~~-P~~~~~~R~~~a~l~l~~~~---~-~~--~~-~~~~~~~~~~~~l~~ 71 (295)
T PRK11689 6 TLIGLIAILLWST----MVGLIRGVSE--SLG-PVGGAAMIYSVSGLLLLLTV---G-FP--RL-RQFPKRYLLAGGLLF 71 (295)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHc--cCC-hHHHHHHHHHHHHHHHHHHc---c-cc--cc-ccccHHHHHHHhHHH
Confidence 3344455555554 4455699888 588 99999999999988876542 1 11 11 122334444444445
Q ss_pred HHHHHHhhhhhc----ccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecccc-----------
Q 024405 90 CINIVLGNVSLR----YIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL----------- 154 (268)
Q Consensus 90 ~~~~~~~~~al~----~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~----------- 154 (268)
.+...+.+.+++ +.+++.++++.++.|+++.+++++++|||++++++.+++++++|+.++..++.
T Consensus 72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~ 151 (295)
T PRK11689 72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNI 151 (295)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhcc
Confidence 666666666664 46788889999999999999999999999999999999999999998865432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHH
Q 024405 155 SFNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIF 234 (268)
Q Consensus 155 ~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (268)
..+..|++++++++++||.|.++.||..++ .++..... ..+.+.+.+.....+++ ..+ .++..|..+.
T Consensus 152 ~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~--~~~~~~~~---~~~~~~l~~~~~~~~~~-~~~------~~~~~~~~l~ 219 (295)
T PRK11689 152 ASNPLSYGLAFIGAFIWAAYCNVTRKYARG--KNGITLFF---ILTALALWIKYFLSPQP-AMV------FSLPAIIKLL 219 (295)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhccCC--CCchhHHH---HHHHHHHHHHHHHhcCc-ccc------CCHHHHHHHH
Confidence 123569999999999999999999997554 45554322 33334444433333221 111 1233355555
Q ss_pred HHHHHHHHHHHHHHHHHhccCcchhhhccc
Q 024405 235 SSGVLAFCLNFSIFYVIHSTTAVTFNVAGN 264 (268)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~sa~t~sv~~~ 264 (268)
+.++.+....+..++.+|+.+|...+....
T Consensus 220 ~~~~~t~~~~~l~~~al~~~~a~~~s~~~~ 249 (295)
T PRK11689 220 LAAAAMGFGYAAWNVGILHGNMTLLATASY 249 (295)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 666655555667789999999998887543
No 15
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.83 E-value=1.1e-18 Score=148.99 Aligned_cols=244 Identities=13% Similarity=0.087 Sum_probs=158.8
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCc--ccChhhh
Q 024405 1 MEASLCTWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLI--TVEPEDR 78 (268)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~--~~~~~~~ 78 (268)
|+++...+.....+....+|.... ...|.. + +++ |..+.++|+.++.+++.++...+++++.. +.+.+++
T Consensus 1 ~~~~~~~~g~~~~l~a~~~wg~~~----~~~k~~-~--~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 72 (296)
T PRK15430 1 MDAKQTRQGVLLALAAYFIWGIAP----AYFKLI-Y--YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQK 72 (296)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHH----HHHHHh-c--CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHH
Confidence 333333334444455555555444 344875 3 588 99999999999988776655433211110 0111223
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccccchhH
Q 024405 79 WRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNM 158 (268)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~ 158 (268)
+......++..+..+.+.++|++++|++.++++.++.|+++.+++++++|||++++++.+++++++|+.++..++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~-- 150 (296)
T PRK15430 73 IFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL-- 150 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc--
Confidence 333334455567889999999999999999999999999999999999999999999999999999999876433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHH
Q 024405 159 FGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGV 238 (268)
Q Consensus 159 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (268)
..++++++++||.|.+..|+..++...+......++.+.+.+...+. .++. ...+ ...+...+..+...++
T Consensus 151 --~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~---~~~~~~~~~~~~~~g~ 221 (296)
T PRK15430 151 --PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSS-TSHM---GQNPMSLNLLLIAAGI 221 (296)
T ss_pred --cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCC-cccc---cCCcHHHHHHHHHHHH
Confidence 14688899999999999998654322333444455555554443221 1211 1111 1111122344555555
Q ss_pred HHHHHHHHHHHHHhccCcchhhhcc
Q 024405 239 LAFCLNFSIFYVIHSTTAVTFNVAG 263 (268)
Q Consensus 239 ~~~~~~~~~~~~i~~~sa~t~sv~~ 263 (268)
.+....++.++.+++.+|.+.|...
T Consensus 222 ~t~i~~~~~~~a~~~~~a~~~s~~~ 246 (296)
T PRK15430 222 VTTVPLLCFTAAATRLRLSTLGFFQ 246 (296)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5556666778999999999888764
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.82 E-value=4.1e-18 Score=142.58 Aligned_cols=226 Identities=8% Similarity=0.021 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCC--cc---cChhhhhHHHHHHHHHHHHHHHH
Q 024405 21 WVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPL--IT---VEPEDRWRRIFPMSFVFCINIVL 95 (268)
Q Consensus 21 ~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~ 95 (268)
.+.+.......|+ .+ +.+ |..+.++|++++.+++.++...+++++. ++ .++++.+......+++.+++..+
T Consensus 11 ~~~wg~~~~~~k~-~~--~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 86 (256)
T TIGR00688 11 SFLFGYMYYYSKL-LK--PLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWL 86 (256)
T ss_pred HHHHHHHHHHHHH-hc--cCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHH
Confidence 3334444455687 44 488 9999999999998887665544332110 11 11122234455677778889999
Q ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccccchhHHHHHHHHHHHHHHHHHH
Q 024405 96 GNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKT 175 (268)
Q Consensus 96 ~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~ 175 (268)
.+.|+++++++.++++.+++|+++++++++++|||++++++.+++++++|+.++..++.+.+ .+++.++++|+.|.
T Consensus 87 ~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~ 162 (256)
T TIGR00688 87 FIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYG 162 (256)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997754332222 35788999999999
Q ss_pred HHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 024405 176 ILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSIFYVIHSTT 255 (268)
Q Consensus 176 i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 255 (268)
+..|+..++ +..+.... .....+...+.....++... +.. .+...|..+.+.|+.+.......++.+++.+
T Consensus 163 i~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~ 233 (256)
T TIGR00688 163 LIRKALKNT---DLAGFCLE-TLSLMPVAIYYLLQTDFATV-QQT----NPFPIWLLLVLAGLITGTPLLAFVIAANRLP 233 (256)
T ss_pred HHHhhcCCC---CcchHHHH-HHHHHHHHHHHHHHhccCcc-ccc----CchhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999986432 22222221 11111122211111121110 100 1112355556666666555666789999999
Q ss_pred cchhhhcc
Q 024405 256 AVTFNVAG 263 (268)
Q Consensus 256 a~t~sv~~ 263 (268)
|.+.++..
T Consensus 234 a~~~s~~~ 241 (256)
T TIGR00688 234 LNLLGLLQ 241 (256)
T ss_pred hHHHHHHH
Confidence 99887754
No 17
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.79 E-value=8.5e-17 Score=137.20 Aligned_cols=229 Identities=11% Similarity=0.062 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHH
Q 024405 11 FRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFC 90 (268)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (268)
.+...+..+=.++........|++++ +++ |..+.++|+.++.+++.++.+.++ + +. ++++++..+..+++..
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~--~~~-~~~~~~~R~~~a~l~l~~~~~~~~--~--~~-~~~~~~~~~~~g~~~~ 82 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFP--LVG-APGVTALRLALGTLILIAIFKPWR--L--RF-AKEQRLPLLFYGVSLG 82 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHH--HcC-HHHHHHHHHHHHHHHHHHHHhHHh--c--cC-CHHHHHHHHHHHHHHH
Confidence 44444444444444455557899998 588 999999999999988876543211 1 22 3456666777888788
Q ss_pred HHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecc--c-cchhHHHHHHHHHH
Q 024405 91 INIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT--E-LSFNMFGFCAALFG 167 (268)
Q Consensus 91 ~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~--~-~~~~~~G~~~~l~s 167 (268)
....+.+++++|+|++.++++..+.|+++.+++. |++++.+ .+.+.++|+.++... + .+.+..|+++++++
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~--~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~a 156 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFV--WVVLAVLGLWFLLPLGQDVSHVDLTGAALALGA 156 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHH--HHHHHHHHHheeeecCCCcccCChHHHHHHHHH
Confidence 8888899999999999999999999999998873 5655544 455678898876532 2 23456899999999
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHHHHHHH-H
Q 024405 168 CLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNF-S 246 (268)
Q Consensus 168 ~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 246 (268)
+++|+.|.+..||..++ .++... .++...+.+.+.|+....+... . .++..+....+.++.+....+ .
T Consensus 157 a~~~a~~~v~~r~~~~~--~~~~~~-~~~~~~~~~~l~~~~~~~~~~~--~------~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 157 GACWAIYILSGQRAGAE--HGPATV-AIGSLIAALIFVPIGALQAGEA--L------WHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred HHHHHHHHHHHHHHhcc--CCchHH-HHHHHHHHHHHHHHHHHccCcc--c------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998664 455554 4566777777777666543211 1 122334444456666655555 5
Q ss_pred HHHHHhccCcchhhhccc
Q 024405 247 IFYVIHSTTAVTFNVAGN 264 (268)
Q Consensus 247 ~~~~i~~~sa~t~sv~~~ 264 (268)
.++.+++.+|...|+...
T Consensus 226 ~~~~~~~~~a~~as~~~~ 243 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMS 243 (293)
T ss_pred HHHHHHhcChhHHHHHHH
Confidence 689999999999887654
No 18
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.76 E-value=1.3e-16 Score=130.57 Aligned_cols=253 Identities=16% Similarity=0.176 Sum_probs=197.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhH
Q 024405 7 TWSVFRSLLAILQWWVFNVTVIITNKWIFQK------LDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWR 80 (268)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~------~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
.++....++.+...+++......+.+-+.++ ..|++|.++.+.|-+.+.++...+...++.. .+.+++++
T Consensus 9 ~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~----~~~~apl~ 84 (327)
T KOG1581|consen 9 ANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE----LSGVAPLY 84 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc----CCCCCchh
Confidence 4455666667777777777777777766653 3488999999999999999887665543222 33466788
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc-------
Q 024405 81 RIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE------- 153 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~------- 153 (268)
....+++.+..+..++..|++|++-|...+.|++.-+.+++.+.++.|+|++..++.+..++.+|+.+....+
T Consensus 85 ~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~ 164 (327)
T KOG1581|consen 85 KYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSK 164 (327)
T ss_pred HHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccc
Confidence 8888999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred --cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcccc-ccccccCCCCchHHH
Q 024405 154 --LSFNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSG-IMDWLSTHPSPWSAF 230 (268)
Q Consensus 154 --~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 230 (268)
.+.++.|+.++....+.+++-+..++++.+++++++++++++.++++.+......+..+... -.++...|+. ..+
T Consensus 165 ~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~--~~~ 242 (327)
T KOG1581|consen 165 SGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPD--VAF 242 (327)
T ss_pred cCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChh--HHH
Confidence 13468999999999999999999999999999999999999999999998887744433211 1122222222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhhccccc
Q 024405 231 IIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLK 266 (268)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~sa~t~sv~~~~k 266 (268)
.++.++...+.++ ...++.+++.+|++.+.+.+.|
T Consensus 243 Di~l~s~~gavGQ-~FI~~TI~~FGslt~t~I~ttR 277 (327)
T KOG1581|consen 243 DILLYSTCGAVGQ-LFIFYTIERFGSLTFTTIMTTR 277 (327)
T ss_pred HHHHHHHhhhhhh-heehhhHhhcccHHHHHHHHHH
Confidence 4444444444444 4468999999999999887765
No 19
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.74 E-value=2.2e-18 Score=135.86 Aligned_cols=250 Identities=16% Similarity=0.198 Sum_probs=196.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc---------CCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhH
Q 024405 10 VFRSLLAILQWWVFNVTVIITNKWIFQK---------LDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWR 80 (268)
Q Consensus 10 ~~~~~~~~~~~~~~s~~~~~~~K~~~~~---------~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
+.+.........+|.....+..+.+.+. ..|+|.+.+.+.|+.+..+..-+...+ ++..+.+ +.+-+
T Consensus 11 r~rf~ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~i---r~~~~~D-~t~~~ 86 (337)
T KOG1580|consen 11 RGRFLICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLI---RKKTEID-NTPTK 86 (337)
T ss_pred ccceeEEecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheee---ccccccc-CCcch
Confidence 3344444444455555555555666552 248899999999999999887655444 2323333 33445
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecccc------
Q 024405 81 RIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL------ 154 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~------ 154 (268)
.....++-|-+.+...|.|++|+|.|...+-|++.|+-+++++..+.|++++|++++++.++++|+++.-..|.
T Consensus 87 ~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e 166 (337)
T KOG1580|consen 87 MYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAE 166 (337)
T ss_pred HHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCc
Confidence 56668888999999999999999999999999999999999999999999999999999999999999877642
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcc-ccccccccCCCCchHHHHH
Q 024405 155 -SFNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEG-SGIMDWLSTHPSPWSAFII 232 (268)
Q Consensus 155 -~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 232 (268)
+..-.|-++.++|....++-...++++.+++..+..++++++++++.+.+.....++++ ++...+..- .|..|+-
T Consensus 167 ~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~R---hP~~~~~ 243 (337)
T KOG1580|consen 167 DKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQR---HPYVFWD 243 (337)
T ss_pred ccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHh---ccHHHHH
Confidence 12247899999999999999999999998888888999999999999998887777643 233222222 2445777
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcchhhhccccc
Q 024405 233 IFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLK 266 (268)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~sa~t~sv~~~~k 266 (268)
+.+-++++....+..|..+...+|++-|++.+.|
T Consensus 244 l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTR 277 (337)
T KOG1580|consen 244 LTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTR 277 (337)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehH
Confidence 8888889999999999999999999999988765
No 20
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.71 E-value=8.8e-16 Score=128.93 Aligned_cols=254 Identities=13% Similarity=0.169 Sum_probs=185.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHH------HHhhcC--C---------
Q 024405 7 TWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVI------KVLKLK--P--------- 69 (268)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~------~~~~~~--~--------- 69 (268)
+|+....+.+.++..+.++....+.+.++++++|+-|+++++.....-.+.+..+. +...++ +
T Consensus 9 ~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~ 88 (416)
T KOG2765|consen 9 RWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEA 88 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhh
Confidence 55566777777778888899999999999988887799988776433333333211 111000 0
Q ss_pred ---------------------------------C--------------c--ccChh------------hhhHHHHHHHHH
Q 024405 70 ---------------------------------L--------------I--TVEPE------------DRWRRIFPMSFV 88 (268)
Q Consensus 70 ---------------------------------~--------------~--~~~~~------------~~~~~~~~~~~~ 88 (268)
. + +.+.| +..+..+..+.+
T Consensus 89 d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~l 168 (416)
T KOG2765|consen 89 DAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPL 168 (416)
T ss_pred hhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 0 0 00011 345566667777
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecccc--------chhHHH
Q 024405 89 FCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL--------SFNMFG 160 (268)
Q Consensus 89 ~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~--------~~~~~G 160 (268)
....++..|.|+++++++..+++.+++-+|+..++.++..||+++.|.+++.+.++|+++++.+|. +....|
T Consensus 169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG 248 (416)
T KOG2765|consen 169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLG 248 (416)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHH
Confidence 889999999999999999999999999999999999999999999999999999999999987742 223689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC--CCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHH
Q 024405 161 FCAALFGCLATSTKTILAESLLHSY--KFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGV 238 (268)
Q Consensus 161 ~~~~l~s~~~~a~~~i~~k~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (268)
.++++.|++.||+|.++.||...++ +.|.-....+..++..+++-|.....+....+.+..++.. .+-..++.+.+
T Consensus 249 ~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~--q~~~vv~~~li 326 (416)
T KOG2765|consen 249 NLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSST--QFSLVVFNNLI 326 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCc--eeEeeeHhhHH
Confidence 9999999999999999999987665 5666666778888888888887777664433233222222 22334455555
Q ss_pred HHHHHHHHHHHHHhccCcchhhhc
Q 024405 239 LAFCLNFSIFYVIHSTTAVTFNVA 262 (268)
Q Consensus 239 ~~~~~~~~~~~~i~~~sa~t~sv~ 262 (268)
..+.--|...+..-.|+|++.++.
T Consensus 327 gtvvSDylW~~a~~lTs~Lv~Tlg 350 (416)
T KOG2765|consen 327 GTVVSDYLWAKAVLLTSPLVVTLG 350 (416)
T ss_pred HHHHHHHHHHHHHHhccchhheee
Confidence 556667777788889999887653
No 21
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.68 E-value=1.4e-14 Score=122.88 Aligned_cols=228 Identities=9% Similarity=0.003 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHHHHhhhhhcc
Q 024405 23 FNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRY 102 (268)
Q Consensus 23 ~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 102 (268)
+.......+|...++ +.| ...++...+.+++.+....+..++..+.++++.+......+........+.+.++++
T Consensus 12 ~~a~~~~~~k~~~~~---~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (281)
T TIGR03340 12 MHAGWNLMAKSHADK---EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHH 86 (281)
T ss_pred HHHHHHHHHhhcCCc---hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444556765553 223 246666666666655544321111112123444555555666678889999999999
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024405 103 IPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE-LSFNMFGFCAALFGCLATSTKTILAESL 181 (268)
Q Consensus 103 ~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~i~~k~~ 181 (268)
.+++.++.+.++.|+++.+++++++|||+++++++|+.++++|+.++..++ ...+..|+.+++.++++|+.|.+..|+.
T Consensus 87 ~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~ 166 (281)
T TIGR03340 87 ADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAA 166 (281)
T ss_pred CChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhcccc
Confidence 999999999999999999999999999999999999999999999776443 2345678889999999999999988876
Q ss_pred hccCCCChHH----HHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 024405 182 LHSYKFDSIN----TVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSIFYVIHSTTAV 257 (268)
Q Consensus 182 ~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sa~ 257 (268)
.++ .++.. .+.+.....+..+.+.....++.. +. ..+...+.....+++.+...+...++.+++.++.
T Consensus 167 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~ 238 (281)
T TIGR03340 167 ALG--VPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS---MF---PYARQILPSATLGGLMIGGAYALVLWAMTRLPVA 238 (281)
T ss_pred ccc--hhcccccHHHHHHHHHHHHHHHHHHHHHHhccc---hh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCce
Confidence 433 22221 222222222111122111112111 10 1112234445555565656566778999999987
Q ss_pred hhhhcc
Q 024405 258 TFNVAG 263 (268)
Q Consensus 258 t~sv~~ 263 (268)
..+...
T Consensus 239 ~~~~~~ 244 (281)
T TIGR03340 239 TVVALR 244 (281)
T ss_pred EEEeec
Confidence 766543
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.67 E-value=2.6e-15 Score=123.91 Aligned_cols=171 Identities=20% Similarity=0.290 Sum_probs=140.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecccc-
Q 024405 76 EDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL- 154 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~- 154 (268)
+++.......+++|+..+.+.+.++++++++.+++++.+..+++++++++++|||.+++||.++.+.+.|+.+...++.
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3455566678889999999999999999999999999999999999999999999999999999999999998754321
Q ss_pred --------c--------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccc
Q 024405 155 --------S--------FNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMD 218 (268)
Q Consensus 155 --------~--------~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 218 (268)
+ ....|+++.+.++++.++..++.+|++|+.+.+.+..+......|.+..++.....|+.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~ 173 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISE 173 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1 125899999999999999999999999998888888888888899888888766666544433
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHH
Q 024405 219 WLSTHPSPWSAFIIIFSSGVLAFCLNFS 246 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (268)
....+++++..|..+...++.|....+.
T Consensus 174 ~g~f~G~~~~~~~~i~~~a~gGllva~v 201 (244)
T PF04142_consen 174 SGFFHGYSWWVWIVIFLQAIGGLLVAFV 201 (244)
T ss_pred CCchhhcchHHHHHHHHHHHhhHHHHHH
Confidence 3333455666777788888877776544
No 23
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.7e-15 Score=122.01 Aligned_cols=243 Identities=14% Similarity=0.173 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHHHHh
Q 024405 18 LQWWVFNVTVIITNKWIFQKLDFK-FPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLG 96 (268)
Q Consensus 18 ~~~~~~s~~~~~~~K~~~~~~~f~-~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (268)
....+....-..+.++++++.+|. |.|.+++.|+.+-..+.++.+.. .+++ ++..+|+....++.+..+++.+.
T Consensus 49 ~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~--~~~k---~r~iP~rtY~~la~~t~gtmGLs 123 (367)
T KOG1582|consen 49 AGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQL--IQTK---RRVIPWRTYVILAFLTVGTMGLS 123 (367)
T ss_pred hHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEe--eccc---ceecchhHhhhhHhhhhhccccC
Confidence 333444445567789999988888 89999999998876555444332 2222 13457788888999999999999
Q ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc----cchhHHHHHHHHHHHHHHH
Q 024405 97 NVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE----LSFNMFGFCAALFGCLATS 172 (268)
Q Consensus 97 ~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~----~~~~~~G~~~~l~s~~~~a 172 (268)
|-|+.|++.|...+.|++..+-+++.+.++-++|+.+.++.+..++..|..+....| .+++..|+.+.-.+.++.|
T Consensus 124 n~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA 203 (367)
T KOG1582|consen 124 NGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADA 203 (367)
T ss_pred cCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988766 3567899999999999999
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024405 173 TKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSIFYVIH 252 (268)
Q Consensus 173 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (268)
+-..++++.++.++-+.-++++|....|.+.++.+...+++. ...|....++++..+....+-+..++.....-...++
T Consensus 204 ~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~-f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~ 282 (367)
T KOG1582|consen 204 VIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGEL-FSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIK 282 (367)
T ss_pred HhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccc-hhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHH
Confidence 999999999988777888999999999999998888877542 2345544455555566667777777777777788999
Q ss_pred ccCcchhhhccccc
Q 024405 253 STTAVTFNVAGNLK 266 (268)
Q Consensus 253 ~~sa~t~sv~~~~k 266 (268)
..+|.+...+.+.|
T Consensus 283 ~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 283 LFGALIAATVTTAR 296 (367)
T ss_pred HhchhHHHHHHHhH
Confidence 99999888777665
No 24
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.60 E-value=2.1e-12 Score=109.45 Aligned_cols=233 Identities=17% Similarity=0.202 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHH
Q 024405 14 LLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINI 93 (268)
Q Consensus 14 ~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (268)
....+++...+.......|...+. ..+ +......|+..+.+....... +++....+ ..++.++..+..++......
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 9 LLALLLWGLLWGLSFIALKLAVES-LDP-FLFAAALRFLIAALLLLPLLL-LEPRGLRP-ALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-cCC-hHHHHHHHHHHHHHHHHHHHH-hhcccccc-cccchHHHHHHHHHHHHHHH
Confidence 334444445555555555666663 133 555666699888877332222 11111111 11223345555666668888
Q ss_pred HHhhhhhcccchhHHHHHHhHHHHHHHHHHH-HHhheecCcchhhhhhheeehheeeeccccch---hHHHHHHHHHHHH
Q 024405 94 VLGNVSLRYIPVSFMQTIKSFTPATTVVLQW-LVWRKYFDWRIWASLVPIVGGILLTSVTELSF---NMFGFCAALFGCL 169 (268)
Q Consensus 94 ~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~-~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~---~~~G~~~~l~s~~ 169 (268)
.+.+.++++++++.++.+.++.|+++.+++. +++|||++++++.+..+.+.|+.++..++... +..|+.+++.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~ 164 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL 164 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 66799999999999999999999998766443 3589999999999
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHH-HHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHHHH-HHHHH
Q 024405 170 ATSTKTILAESLLHSYKFDSINTVY-YMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFC-LNFSI 247 (268)
Q Consensus 170 ~~a~~~i~~k~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 247 (268)
+++++.+..|+.. +.++..... ++.. ...+.......++.. .......+..+...++.+.. ..+..
T Consensus 165 ~~a~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (292)
T COG0697 165 LWALYTALVKRLS---RLGPVTLALLLQLL--LALLLLLLFFLSGFG-------APILSRAWLLLLYLGVFSTGLAYLLW 232 (292)
T ss_pred HHHHHHHHHHHhc---CCChHHHHHHHHHH--HHHHHHHHHHhcccc-------ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999976 345555555 3333 222222222222111 11123346666777777765 44455
Q ss_pred HHHHhccCcchhhhc
Q 024405 248 FYVIHSTTAVTFNVA 262 (268)
Q Consensus 248 ~~~i~~~sa~t~sv~ 262 (268)
++..++.++...+..
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (292)
T COG0697 233 YYALRLLGASLVALL 247 (292)
T ss_pred HHHHHhcCchHHHHH
Confidence 788999998877654
No 25
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.58 E-value=2e-13 Score=110.70 Aligned_cols=247 Identities=14% Similarity=0.122 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCc-----------ccChhhhhHHHHH
Q 024405 21 WVFNVTVIITNKWIFQK-----LDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLI-----------TVEPEDRWRRIFP 84 (268)
Q Consensus 21 ~~~s~~~~~~~K~~~~~-----~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 84 (268)
....+.-+++.||.-+. .+|++|...+..-|+--.+++..+...+.+...+ +.+++-+.+..+|
T Consensus 12 vvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~ 91 (372)
T KOG3912|consen 12 VVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLP 91 (372)
T ss_pred hhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecC
Confidence 34445556788998662 4588898887766665556655544333221111 1111334566778
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecccc----------
Q 024405 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL---------- 154 (268)
Q Consensus 85 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~---------- 154 (268)
.+++...+..+.+.++.+++++.+|+++-...+|+.+++.-+++++.+.+||.++.....|++.+...|.
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~ 171 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDY 171 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcccc
Confidence 8999999999999999999999999999999999999999999999999999999999999998865431
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccc----c--------ccccccC
Q 024405 155 SFNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGS----G--------IMDWLST 222 (268)
Q Consensus 155 ~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~--------~~~~~~~ 222 (268)
+.-..|+.+.+.+-+..|.+.++.+|.+++++.+|.+...|...+|.+++...+...... . .+||.+.
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~ 251 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA 251 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence 222589999999999999999999999999999999999999999977665444433211 1 1122110
Q ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhcccccC
Q 024405 223 ---HPSPWSAFIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKV 267 (268)
Q Consensus 223 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sa~t~sv~~~~k~ 267 (268)
....+.....+....+.--+.|++.....|..|+.|-.+...+|+
T Consensus 252 ~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt 299 (372)
T KOG3912|consen 252 FAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRT 299 (372)
T ss_pred HHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhh
Confidence 011222222222333333467899999999999999998877764
No 26
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.53 E-value=7.4e-12 Score=105.46 Aligned_cols=230 Identities=13% Similarity=0.197 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHHHHHHHHhh----cCCCcccCh-----hhhhHHHHHHH
Q 024405 17 ILQWWVFNVTVIITNKWIFQKLDFKF-PLSVSCIHFICSSIGAYLVIKVLK----LKPLITVEP-----EDRWRRIFPMS 86 (268)
Q Consensus 17 ~~~~~~~s~~~~~~~K~~~~~~~f~~-p~~l~~~r~~~~~l~l~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~ 86 (268)
.+.-.+.+.++.+..||.-++.+.+| |.+..++-=.+-.+++........ ++..+.+++ +++-.+....+
T Consensus 20 l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa 99 (345)
T KOG2234|consen 20 LIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPA 99 (345)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHH
Confidence 33444677788888888877543332 777766665555555544433221 121112211 22344455678
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecc---c--------cc
Q 024405 87 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT---E--------LS 155 (268)
Q Consensus 87 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~---~--------~~ 155 (268)
+.|+..+.+.+.++.+.+++.+++........|++++++++|||.+++||.++++.++|+.+.-.+ + .+
T Consensus 100 ~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~ 179 (345)
T KOG2234|consen 100 LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQ 179 (345)
T ss_pred HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCccc
Confidence 889999889999999999999999999999999999999999999999999999999999987621 1 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHH
Q 024405 156 FNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFS 235 (268)
Q Consensus 156 ~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (268)
..+.|....+.++...++..++.+|++|+.+.+.+..+...+.+|.+..+......|+.+....-..+++++..|..++.
T Consensus 180 n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~ 259 (345)
T KOG2234|consen 180 NPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLL 259 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHH
Confidence 34789999999999999999999999999888888888888899988888887777766554222356677788888888
Q ss_pred HHHHHHHHHHH
Q 024405 236 SGVLAFCLNFS 246 (268)
Q Consensus 236 ~~~~~~~~~~~ 246 (268)
++..|....+.
T Consensus 260 ~a~gGLlvs~v 270 (345)
T KOG2234|consen 260 NAVGGLLVSLV 270 (345)
T ss_pred HhccchhHHHH
Confidence 88888776554
No 27
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.47 E-value=2.5e-13 Score=104.68 Aligned_cols=109 Identities=34% Similarity=0.546 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-----CCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccC----C-CCchHH
Q 024405 160 GFCAALFGCLATSTKTILAESLLHS-----YKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLST----H-PSPWSA 229 (268)
Q Consensus 160 G~~~~l~s~~~~a~~~i~~k~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~-~~~~~~ 229 (268)
|.++++.|.++.++++++.|+.+++ .+.++.++.+|+++.+.+.+.|..+..|+++..+.... + ..+...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7889999999999999999999887 68999999999999999999999999988764322211 1 114567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchhhhcccccCC
Q 024405 230 FIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVR 268 (268)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~sa~t~sv~~~~k~~ 268 (268)
+..+..+|++++..|++.+++++++||+|.+++|++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~ 119 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRI 119 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHH
Confidence 889999999999999999999999999999999999974
No 28
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.42 E-value=5.6e-13 Score=107.85 Aligned_cols=227 Identities=15% Similarity=0.244 Sum_probs=170.6
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHHHHhhhhhcc-cchhHH
Q 024405 30 TNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRY-IPVSFM 108 (268)
Q Consensus 30 ~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~ 108 (268)
.-+.+.++ +=+.-..+++.||++-..--++.. .+....+++-+.|.....-..+...+...|+++++ ++.|..
T Consensus 21 ~lE~L~~~-~pgsgNLITFaqFlFia~eGlif~-----skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlH 94 (330)
T KOG1583|consen 21 FLELLVRN-EPGSGNLITFAQFLFIATEGLIFT-----SKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLH 94 (330)
T ss_pred HHHHHHHh-CCCCeeehHHHHHHHHHHhceeee-----ccccccCCCCchhhhheehheeeeeeeeccceeeecccceEE
Confidence 34666664 222356899999988776554432 12222333445566666666677888999999999 799999
Q ss_pred HHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecc---ccc--------h------h--HHHHHHHHHHHH
Q 024405 109 QTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT---ELS--------F------N--MFGFCAALFGCL 169 (268)
Q Consensus 109 ~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~---~~~--------~------~--~~G~~~~l~s~~ 169 (268)
-+.++..++-++++++++.|+|++.+|+.++.+..+|+.+.+.. |.. . - ..|+.+...+.+
T Consensus 95 iIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~ 174 (330)
T KOG1583|consen 95 IIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALL 174 (330)
T ss_pred EEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987542 210 0 1 379999999999
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccc-----------cCCCCchHHHHHHHHHHH
Q 024405 170 ATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWL-----------STHPSPWSAFIIIFSSGV 238 (268)
Q Consensus 170 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 238 (268)
..|...+++++.+++++-|+-|.++|+...+.+.. .+..++-..+|. .....-|..|..+..+++
T Consensus 175 ~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~F----lf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L 250 (330)
T KOG1583|consen 175 LSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLF----LFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL 250 (330)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchH----HHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH
Confidence 99999999999999998999999999998776543 333322111111 111224678889999999
Q ss_pred HHHHHHHHHHHHHhccCcchhhhccccc
Q 024405 239 LAFCLNFSIFYVIHSTTAVTFNVAGNLK 266 (268)
Q Consensus 239 ~~~~~~~~~~~~i~~~sa~t~sv~~~~k 266 (268)
..+...-.-+.+..+++++|.+++=++|
T Consensus 251 ~Qy~CikgVy~L~te~~sLTVTlvltlR 278 (330)
T KOG1583|consen 251 TQYFCIKGVYILTTETSSLTVTLVLTLR 278 (330)
T ss_pred HHHHHHHhhhhhhceecceEEEEeeeHH
Confidence 9888877778899999999999987665
No 29
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.35 E-value=2.2e-12 Score=95.62 Aligned_cols=120 Identities=20% Similarity=0.462 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHH-HHHHHHHhhhhhccc
Q 024405 25 VTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFV-FCINIVLGNVSLRYI 103 (268)
Q Consensus 25 ~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~ 103 (268)
......+|...+ ++| |....++|+..+.+ +.+.....++++..+. +++++......+.+ ..++..+.+.++++.
T Consensus 4 a~~~~~~k~~~~--~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 4 AIYSVFSKKLLK--KIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNL-SPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred eeHHHHHHHHhc--cCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCC-ChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 345567799988 488 99999999999997 5554444343332233 34466666667776 589999999999999
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheee
Q 024405 104 PVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (268)
Q Consensus 104 ~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 149 (268)
+++.++.+.++.|+++.+++++++||++++++++++.++++|+.++
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.32 E-value=4.8e-10 Score=95.41 Aligned_cols=223 Identities=16% Similarity=0.148 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHH
Q 024405 13 SLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCIN 92 (268)
Q Consensus 13 ~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (268)
++..+++|.... ...|+.. +.+ |..+. |..++.++...+....+. ++ .+.++.+..-+..++.++.+
T Consensus 6 ~lia~~~wGs~g----~~~k~~~---g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~~--~~~~~~~~~g~l~G~~w~ig 72 (290)
T TIGR00776 6 ALIPALFWGSFV----LINVKIG---GGP-YSQTL--GTTFGALILSIAIAIFVL-PE--FWALSIFLVGLLSGAFWALG 72 (290)
T ss_pred HHHHHHHHhhhH----HHHhccC---CCH-HHHHH--HHHHHHHHHHHHHHHHhC-Cc--ccccHHHHHHHHHHHHHHhh
Confidence 344444554443 4446554 466 33333 677777766555444332 21 12244555566677778889
Q ss_pred HHHhhhhhcccchhHHHHHHh-HHHHHHHHHHHHHhheecCcch----hhhhhheeehheeeeccccc-------hh-HH
Q 024405 93 IVLGNVSLRYIPVSFMQTIKS-FTPATTVVLQWLVWRKYFDWRI----WASLVPIVGGILLTSVTELS-------FN-MF 159 (268)
Q Consensus 93 ~~~~~~al~~~~~~~~~~l~~-~~pv~~~l~~~~~~~e~~~~~~----~~~~~l~~~Gv~l~~~~~~~-------~~-~~ 159 (268)
+.+++.|.++++++.+..+.+ .+|++..+.+.+++||+.++++ .+++++.++|+.+....+.+ .+ ..
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~ 152 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKK 152 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhh
Confidence 999999999999999998888 8889999999999999999999 99999999999988653211 23 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHh---HHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHH
Q 024405 160 GFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMA---PFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSS 236 (268)
Q Consensus 160 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (268)
|+++++.|+++++.|.+..|+. +.+|.+..+.+. ..+.....+.. .+. .++ .....+...+.
T Consensus 153 Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~---~~~------~~~~~~~~~~~ 217 (290)
T TIGR00776 153 GILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH--ILA---KPL------KKYAILLNILP 217 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH--hcc---cch------HHHHHHHHHHH
Confidence 9999999999999999999975 257777744333 33333333222 110 011 11122333447
Q ss_pred HHHHHHHHHHHHHHHh-ccCcchhhhcc
Q 024405 237 GVLAFCLNFSIFYVIH-STTAVTFNVAG 263 (268)
Q Consensus 237 ~~~~~~~~~~~~~~i~-~~sa~t~sv~~ 263 (268)
|+.....+...+...+ +.++.+.++..
T Consensus 218 Gi~~~ia~~~y~~~~~~~~~~~~~~~ls 245 (290)
T TIGR00776 218 GLMWGIGNFFYLFSAQPKVGVATSFSLS 245 (290)
T ss_pred HHHHHHHHHHHHHHcccccchhhHHHHH
Confidence 7775444555667677 77777766554
No 31
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.30 E-value=2.7e-11 Score=87.08 Aligned_cols=134 Identities=18% Similarity=0.100 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHHH
Q 024405 15 LAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIV 94 (268)
Q Consensus 15 ~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (268)
++.++-..+.....++.|..++ +.| |.+-+..|..+....+...+...|+......-.++.|..+...|+..+.+..
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl~--~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGLE--GVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--ccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 3444444555556688899999 688 9999999999888887776665444332211235678888888888899999
Q ss_pred HhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeec
Q 024405 95 LGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 95 ~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 151 (268)
+++.|++.-.+|...-+..++|+++.+++++++|||++..+++++.++.+|+.+.+.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999999998764
No 32
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.26 E-value=1.5e-09 Score=87.31 Aligned_cols=209 Identities=15% Similarity=0.128 Sum_probs=160.5
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHHHHhhhhhcccchhHHH
Q 024405 30 TNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQ 109 (268)
Q Consensus 30 ~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 109 (268)
+-|.++. .++ |.-.+++|..++.+++..+.+=+++ +. .++++......|......+.+.+.|++.+|.+.+.
T Consensus 30 ~Ak~LFP--~vG-~~g~t~lRl~~aaLIll~l~RPwr~----r~-~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAV 101 (292)
T COG5006 30 FAKSLFP--LVG-AAGVTALRLAIAALILLALFRPWRR----RL-SKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAV 101 (292)
T ss_pred HHHHHcc--ccC-hhhHHHHHHHHHHHHHHHHhhHHHh----cc-ChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 4577777 466 9999999999999998876553221 22 46788889999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 024405 110 TIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE---LSFNMFGFCAALFGCLATSTKTILAESLLHSYK 186 (268)
Q Consensus 110 ~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~ 186 (268)
.+-.+.|+.+..++. || .++...+.+.+.|..+..-.. .+.|+.|..+++.+..||+.|.+..||.-+.
T Consensus 102 AiEF~GPL~vA~~~s----Rr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-- 173 (292)
T COG5006 102 AIEFTGPLAVALLSS----RR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGRA-- 173 (292)
T ss_pred hhhhccHHHHHHHhc----cc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhccc--
Confidence 999999999887663 33 344455556777877664322 4678999999999999999999999998653
Q ss_pred CChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHHHHHHHHH-HHHHhccCcchhhhc
Q 024405 187 FDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSI-FYVIHSTTAVTFNVA 262 (268)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~sa~t~sv~ 262 (268)
.+....+..-+..+.++.+|+.....++.+. ++.....-...++++...-|+. +..+++.++-++++.
T Consensus 174 ~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~--------~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~L 242 (292)
T COG5006 174 EHGTAGVAVGMLVAALIVLPIGAAQAGPALF--------SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTL 242 (292)
T ss_pred CCCchHHHHHHHHHHHHHhhhhhhhcchhhc--------ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHH
Confidence 4667778888899999999998866554433 3445566667777777777754 788888887776653
No 33
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.25 E-value=7.2e-13 Score=106.80 Aligned_cols=228 Identities=15% Similarity=0.242 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHH
Q 024405 13 SLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCIN 92 (268)
Q Consensus 13 ~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (268)
.....+. +.++..+....|.+. ++ |....-.|+..-.++..++..+.+ .+. ..++...+.+++.++....+
T Consensus 40 l~l~~vs-~ff~~~~vv~t~~~e----~~-p~e~a~~r~l~~mlit~pcliy~~-~~v--~gp~g~R~~LiLRg~mG~tg 110 (346)
T KOG4510|consen 40 LLLLTVS-YFFNSCMVVSTKVLE----ND-PMELASFRLLVRMLITYPCLIYYM-QPV--IGPEGKRKWLILRGFMGFTG 110 (346)
T ss_pred ceehhhH-HHHhhHHHhhhhhhc----cC-hhHhhhhhhhhehhhhheEEEEEe-eee--ecCCCcEEEEEeehhhhhhH
Confidence 3344444 555666655555444 45 999998997776666655443322 121 12344555666788888888
Q ss_pred HHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc--------------cchhH
Q 024405 93 IVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE--------------LSFNM 158 (268)
Q Consensus 93 ~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~--------------~~~~~ 158 (268)
..+.++|++|.+.+.++++..++|+++.+++++++||++++.+.++..+.+.||+++..++ .+.+.
T Consensus 111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~ 190 (346)
T KOG4510|consen 111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDI 190 (346)
T ss_pred HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999986532 12234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHH
Q 024405 159 FGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGV 238 (268)
Q Consensus 159 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (268)
.|.+.++.++..-|.-.++.|++-|+ .|....+.|....+.+...+.....+.. +++.. +..++++.-.|+
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~--~h~~msvsyf~~i~lV~s~I~~~~ig~~---~lP~c----gkdr~l~~~lGv 261 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKN--AHAIMSVSYFSLITLVVSLIGCASIGAV---QLPHC----GKDRWLFVNLGV 261 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhcc--ccEEEEehHHHHHHHHHHHHHHhhccce---ecCcc----ccceEEEEEehh
Confidence 68888888888888888899988665 4555556666777777666655544422 22111 122455555566
Q ss_pred HHHHHHHHHH--HHHhccCcch
Q 024405 239 LAFCLNFSIF--YVIHSTTAVT 258 (268)
Q Consensus 239 ~~~~~~~~~~--~~i~~~sa~t 258 (268)
.+++...... ..+++.+|+.
T Consensus 262 fgfigQIllTm~lQiErAGpva 283 (346)
T KOG4510|consen 262 FGFIGQILLTMGLQIERAGPVA 283 (346)
T ss_pred hhhHHHHHHHHHhhhhccCCee
Confidence 6665544332 4466666654
No 34
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.25 E-value=5e-09 Score=86.25 Aligned_cols=214 Identities=15% Similarity=0.138 Sum_probs=144.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCC-cc-cChhhhhHHHHHH
Q 024405 8 WSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPL-IT-VEPEDRWRRIFPM 85 (268)
Q Consensus 8 ~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 85 (268)
+.....+.+-.+|.. +-+..|.+-. .+ |..+...|.+.+...+.+.....|+.+. .+ .++++.+......
T Consensus 7 ~Gil~~l~Ay~lwG~----lp~y~kll~~---~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~ 78 (293)
T COG2962 7 KGILLALLAYLLWGL----LPLYFKLLEP---LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALT 78 (293)
T ss_pred chhHHHHHHHHHHHH----HHHHHHHHcc---CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHH
Confidence 334444554445544 4445566653 77 9999999999998888776655443321 11 1123345555556
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccccchhHHHHHHHH
Q 024405 86 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAAL 165 (268)
Q Consensus 86 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l 165 (268)
+..-+.+...+.+|.++-.+=.++.=....|++.++++.+++|||+++.|++++.+..+||..-.....+.++....
T Consensus 79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~--- 155 (293)
T COG2962 79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALA--- 155 (293)
T ss_pred HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH---
Confidence 67778999999999999888888888899999999999999999999999999999999999988888788876544
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHHH
Q 024405 166 FGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAF 241 (268)
Q Consensus 166 ~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (268)
=++.+++|...=|+. ++|+.+-...-...-.+..+......|+... .. ..++...+.++..+|..+.
T Consensus 156 -la~sf~~Ygl~RK~~----~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~--~~--~~~~~~~~~LLv~aG~vTa 222 (293)
T COG2962 156 -LALSFGLYGLLRKKL----KVDALTGLTLETLLLLPVALIYLLFLADSGQ--FL--QQNANSLWLLLVLAGLVTA 222 (293)
T ss_pred -HHHHHHHHHHHHHhc----CCchHHhHHHHHHHHhHHHHHHHHHHhcCch--hh--hcCCchHHHHHHHhhHHHH
Confidence 356788888666553 3566665555445444444555555543321 11 1112233555666665543
No 35
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.17 E-value=4.7e-11 Score=95.85 Aligned_cols=198 Identities=13% Similarity=0.210 Sum_probs=149.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHH
Q 024405 8 WSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSF 87 (268)
Q Consensus 8 ~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (268)
++.+..+...=.--.+..+..+.+.++-++ +.+-|..-+++....-.++--++..+++ + . -+..|+..+..++
T Consensus 14 kk~li~~~LGQiLSL~~t~~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~--~---~-~~~~~~hYilla~ 86 (336)
T KOG2766|consen 14 KKTLIGLGLGQILSLLITSTAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR--K---Y-IKAKWRHYILLAF 86 (336)
T ss_pred hhhhheeeHHHHHHHHHHcchhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh--H---H-HHHHHHHhhheeE
Confidence 333333333333334555555666776664 6888988888776655555444444422 1 1 2445666777787
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecccc--------chhHH
Q 024405 88 VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL--------SFNMF 159 (268)
Q Consensus 88 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~--------~~~~~ 159 (268)
...=++++-..|.+|++....+.+-+-..+.+++++++++|.|+++.++.|++++++|+++....|. +....
T Consensus 87 ~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~ 166 (336)
T KOG2766|consen 87 VDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVK 166 (336)
T ss_pred EeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCcc
Confidence 7777777888999999999999999999999999999999999999999999999999998865441 22358
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcccc
Q 024405 160 GFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSG 215 (268)
Q Consensus 160 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (268)
|+++.++++-+||+-++..+.+-|+ .+..+++....++|.++..+- +..|..+
T Consensus 167 GD~lvi~GATlYaVSNv~EEflvkn--~d~~elm~~lgLfGaIIsaIQ-~i~~~~~ 219 (336)
T KOG2766|consen 167 GDFLVIAGATLYAVSNVSEEFLVKN--ADRVELMGFLGLFGAIISAIQ-FIFERHH 219 (336)
T ss_pred CcEEEEecceeeeeccccHHHHHhc--CcHHHHHHHHHHHHHHHHHHH-Hhhhccc
Confidence 9999999999999999999988775 788999999999999988877 5555433
No 36
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.13 E-value=1.2e-10 Score=85.03 Aligned_cols=107 Identities=18% Similarity=0.377 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCc-ccChhhhhHHHHHHHHHHH-HHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHH
Q 024405 48 CIHFICSSIGAYLVIKVLKLKPLI-TVEPEDRWRRIFPMSFVFC-INIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWL 125 (268)
Q Consensus 48 ~~r~~~~~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~ 125 (268)
.+|+.++.+++..+...+++.+.. +..+++++......+.... .+..+..+|+++.+ +.+..+.++.|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 578888888887776664432211 1112344555555666664 88999999999999 58889999999999999999
Q ss_pred HhheecCcchhhhhhheeehheeeeccccc
Q 024405 126 VWRKYFDWRIWASLVPIVGGILLTSVTELS 155 (268)
Q Consensus 126 ~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~ 155 (268)
++|||++++++.++.++++|+.++..+|.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999998877643
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.11 E-value=2.2e-10 Score=88.62 Aligned_cols=182 Identities=17% Similarity=0.200 Sum_probs=135.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc-
Q 024405 75 PEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE- 153 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~- 153 (268)
-|...++..|.++++.+.++.+..+++.++++.++.+.++.-.|+.+++++++|+|+.--++.+.++.+.|++++.+.|
T Consensus 49 ik~~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 49 IKLFFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred eeeeeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 3555677788899999999999999999999999999999999999999999999999999999999999999998544
Q ss_pred -cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHH---HHHhccccccccccCCCCchHH
Q 024405 154 -LSFNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIP---ALLLEGSGIMDWLSTHPSPWSA 229 (268)
Q Consensus 154 -~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~ 229 (268)
...++.|+..++.|+...|+|.+..|+...+-+. -+..++++..|..-+... ........++.|..... ..
T Consensus 129 ~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~--Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~---~P 203 (290)
T KOG4314|consen 129 EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANF--GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAA---AP 203 (290)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcc--hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhh---CC
Confidence 5578999999999999999999999998876433 344555555554333221 11111112222221111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchhhh
Q 024405 230 FIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNV 261 (268)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~sa~t~sv 261 (268)
|..+...+.+....|+.....+..+.|...|+
T Consensus 204 WG~l~G~A~L~lAFN~~iN~GiaL~~PilISi 235 (290)
T KOG4314|consen 204 WGCLCGAAGLSLAFNFLINFGIALLNPILISI 235 (290)
T ss_pred chhhhhHHHHHHHHhhheeehhhhhchhhhee
Confidence 45555556666667777777777788877765
No 38
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.90 E-value=5.6e-08 Score=81.35 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHH-HH
Q 024405 13 SLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVF-CI 91 (268)
Q Consensus 13 ~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 91 (268)
...+.++-.++........|...++.+-+ +.....+|+.++.+++.+.....+. + ... .++.+...+..+.+. ..
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLGP-N-PQA-LSLQWGALLYLGLIGTAL 204 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcCC-C-CCc-chHHHHHHHHHHHHHHHH
Confidence 33444444455555566678888743333 4456667889888887766554322 1 122 244555555566654 78
Q ss_pred HHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehh
Q 024405 92 NIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGI 146 (268)
Q Consensus 92 ~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv 146 (268)
...++++++++.+++.++.+.++.|+++.++++++++|+++..++.|..+++.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999999999998886
No 39
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.50 E-value=5e-06 Score=63.72 Aligned_cols=132 Identities=12% Similarity=0.051 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcc----cC------hhhhhHHH
Q 024405 18 LQWWVFNVTVIITNKWIFQK-----LDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLIT----VE------PEDRWRRI 82 (268)
Q Consensus 18 ~~~~~~s~~~~~~~K~~~~~-----~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~----~~------~~~~~~~~ 82 (268)
+.-.++...-....|..+++ .+.+ |..+.......+.+.+.+.....+..+..+ .. .++.+..+
T Consensus 6 l~s~~~~al~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (153)
T PF03151_consen 6 LASSLFSALRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLL 84 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHH
Confidence 33344555555677787776 5677 999999998888888887766544332111 00 12344555
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeee
Q 024405 83 FPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (268)
Q Consensus 83 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 150 (268)
+..+++....+...+..++++++-.++++.....+.+.+++.++++|+++..++.|+.+.++|+.+.+
T Consensus 85 ~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 85 ILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 55666677888899999999999999999999999999999999999999999999999999987654
No 40
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.49 E-value=3.5e-06 Score=73.76 Aligned_cols=129 Identities=14% Similarity=0.158 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcc--cChhhhhHHHHHHHHHHHHHHHHhhhh
Q 024405 22 VFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLIT--VEPEDRWRRIFPMSFVFCINIVLGNVS 99 (268)
Q Consensus 22 ~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a 99 (268)
+++...+...|...+ +++.+...++++..++.+.+.+........+... ..+......++-.++...+.+.+++++
T Consensus 199 ~~wa~~~il~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~ 276 (358)
T PLN00411 199 IFVSVSFILQAHIMS--EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWT 276 (358)
T ss_pred HHHHHHHHHHHHHHH--HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444456677766 4664557778888777766554433322111110 001111112222334445677889999
Q ss_pred hcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecc
Q 024405 100 LRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (268)
Q Consensus 100 l~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 152 (268)
+++.+++.+++.....|++++++++++++|+++..+++|.+++++|+.+...+
T Consensus 277 v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 277 VRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred HhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999987653
No 41
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.48 E-value=3.7e-07 Score=74.73 Aligned_cols=160 Identities=15% Similarity=0.035 Sum_probs=103.5
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecc--------------------cc-------c
Q 024405 103 IPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT--------------------EL-------S 155 (268)
Q Consensus 103 ~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~--------------------~~-------~ 155 (268)
+++|.....++..|+++++.+....+||++..|+++..+...|+...... +. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 56788899999999999999999999999999999999999888743221 10 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHH
Q 024405 156 FNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFS 235 (268)
Q Consensus 156 ~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (268)
..+.|..+.+.+..+.++..+++++..|+++...+..+......+.+.........+.....++...++++...|..+..
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 34678888888889999999999998776544433333333334433222222222222222222233444444555544
Q ss_pred HHHHHHHHHHHHHHHHhccCcchhhhccccc
Q 024405 236 SGVLAFCLNFSIFYVIHSTTAVTFNVAGNLK 266 (268)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~~sa~t~sv~~~~k 266 (268)
+++.+. +..+++|+.++.+.+++...+
T Consensus 162 ~a~~~~----~v~~vlk~~~~~~~~~~~~~~ 188 (222)
T TIGR00803 162 NVGGGL----CIGGVVRYADNTTKSFVTALS 188 (222)
T ss_pred HHhcCc----eeeehhHHhHHHHHHHHHHHH
Confidence 444333 356789999999888876553
No 42
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.44 E-value=1.6e-06 Score=62.73 Aligned_cols=64 Identities=20% Similarity=0.360 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeee
Q 024405 87 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (268)
Q Consensus 87 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 150 (268)
..+.....+...++++.|.+.+..+-++.++++.+.+++++||++++++++++.++++|+.++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4467888999999999999999999999999999999999999999999999999999998764
No 43
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.42 E-value=4.6e-06 Score=71.20 Aligned_cols=110 Identities=12% Similarity=0.078 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHH-HHHHHHhhhhhcccchhHHHHHHhHHHHHHHH
Q 024405 43 PLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVF-CINIVLGNVSLRYIPVSFMQTIKSFTPATTVV 121 (268)
Q Consensus 43 p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l 121 (268)
|...+.+++.++.+.+.+.....+. +....+..+.+......+++. .+...++++++++.+++.++.+....|++.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i 255 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLLIASLLSGE-RLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVL 255 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCC-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 5667788988888877665443221 111112234565666666654 68888999999999999999999999999999
Q ss_pred HHHHHhheecCcchhhhhhheeehheeeeccc
Q 024405 122 LQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 122 ~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
+++++++|+++..+++|..+++.|+.+....+
T Consensus 256 ~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 256 LGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876543
No 44
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.38 E-value=1e-05 Score=69.01 Aligned_cols=123 Identities=12% Similarity=0.110 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHH-HHHHHHhhhhh
Q 024405 22 VFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVF-CINIVLGNVSL 100 (268)
Q Consensus 22 ~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al 100 (268)
++....+...|...+ +.+ |.... ++..++.+.+.+...... +.... ....+...+..+++. .+.+.++++++
T Consensus 158 ~~~a~~~v~~r~~~~--~~~-~~~~~-~~~~~~~~~l~~~~~~~~--~~~~~-~~~~~~~~l~lgv~~t~~~~~l~~~~~ 230 (293)
T PRK10532 158 ACWAIYILSGQRAGA--EHG-PATVA-IGSLIAALIFVPIGALQA--GEALW-HWSILPLGLAVAILSTALPYSLEMIAL 230 (293)
T ss_pred HHHHHHHHHHHHHhc--cCC-chHHH-HHHHHHHHHHHHHHHHcc--CcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455577655 345 66654 455556655555443321 11111 123343344566654 67888999999
Q ss_pred cccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeec
Q 024405 101 RYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 101 ~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 151 (268)
++.+++.++.+....|++..++++++++|+++..+++|..++++|+.....
T Consensus 231 ~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 231 TRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998887643
No 45
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.27 E-value=6.4e-06 Score=70.62 Aligned_cols=134 Identities=10% Similarity=-0.033 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChh---------hhhHHHHHHHH
Q 024405 17 ILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPE---------DRWRRIFPMSF 87 (268)
Q Consensus 17 ~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 87 (268)
+++-..++...+...|...++.+.+ |..++.++...+.+.+.+.....+..+....... ..+...+..+.
T Consensus 150 ~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (302)
T TIGR00817 150 AMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAM 228 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHH
Confidence 3333444444556667777643577 9999999999988887776554321110000000 01111111222
Q ss_pred -HHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeec
Q 024405 88 -VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 88 -~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 151 (268)
.+...+.+.+.+++++++..+++.....|+++.++++++++|+++..+++|.+++++|+.+...
T Consensus 229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 2233335666899999999999999999999999999999999999999999999999987654
No 46
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.17 E-value=3.3e-05 Score=66.02 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeec
Q 024405 77 DRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 151 (268)
+.+...+..++...+.+.++++++++.+++..+...+..|++..++++++++|+++..+++|.++++.|+.+...
T Consensus 213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 445555555555577899999999999999999999999999999999999999999999999999999877654
No 47
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.14 E-value=7.4e-05 Score=63.97 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCC-----CcccChhhhhHHHHHHHHHH-HH
Q 024405 18 LQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKP-----LITVEPEDRWRRIFPMSFVF-CI 91 (268)
Q Consensus 18 ~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~ 91 (268)
+.=.+++...++..|...++++-+.......++...+.+.........+... .... ..+.+...+-.+++. .+
T Consensus 149 l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~i~~t~~ 227 (299)
T PRK11453 149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTI-DMTTILSLMYLAFVATIV 227 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccC-CHHHHHHHHHHHHHHHHH
Confidence 3333444444556676654311111234445555555443332222211111 0112 234555555566555 67
Q ss_pred HHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecc
Q 024405 92 NIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (268)
Q Consensus 92 ~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 152 (268)
.+.+++.++++.+++.++.+....|++..++++++++|+++..+++|..++++|+.+...+
T Consensus 228 ~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 228 GYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 8889999999999999999999999999999999999999999999999999999876543
No 48
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.09 E-value=1.3e-05 Score=68.05 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehhee
Q 024405 78 RWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 148 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l 148 (268)
.+......++...+.+.++++++++.+++..+...+..|++..+++++++||++++.+++|..++++|+.+
T Consensus 210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 210 ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 33334444455578899999999999999999999999999999999999999999999999999999865
No 49
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.08 E-value=0.00011 Score=64.41 Aligned_cols=135 Identities=9% Similarity=0.032 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-----CCchHHHHHHHHHHHHHHHHHHHHHhhcCCCc--------ccCh---hhh
Q 024405 15 LAILQWWVFNVTVIITNKWIFQKLD-----FKFPLSVSCIHFICSSIGAYLVIKVLKLKPLI--------TVEP---EDR 78 (268)
Q Consensus 15 ~~~~~~~~~s~~~~~~~K~~~~~~~-----f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~--------~~~~---~~~ 78 (268)
..+++-.+++..-+...|..+++++ .+ +..+.......+.+.+++.....+..+.. ..+. ...
T Consensus 197 ~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 275 (350)
T PTZ00343 197 WCAMLSNLGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGII 275 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHH
Confidence 3333444555555667788777532 44 55566666778887777665433211100 0000 001
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeee
Q 024405 79 WRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (268)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 150 (268)
+...+..++.+.+.+...+.+++++++..+++.....|+++.++++++++|+++..+++|..++++|+.+.+
T Consensus 276 l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 276 IFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 111222222333333344469999999999999999999999999999999999999999999999997654
No 50
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.90 E-value=0.00017 Score=61.67 Aligned_cols=70 Identities=7% Similarity=0.045 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeec
Q 024405 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 151 (268)
....++.....+.+.+.++++.+++..+.+.+..|++..+.++++++|+++..++.+..++++|+.+...
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4444555678899999999999999999999999999999999999999999999999999888876653
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.89 E-value=0.0014 Score=54.62 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hHHHHHHHHHHHHHhheecCcchh----hhhhheeehheeeec
Q 024405 77 DRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRKYFDWRIW----ASLVPIVGGILLTSV 151 (268)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pv~~~l~~~~~~~e~~~~~~~----~~~~l~~~Gv~l~~~ 151 (268)
..+...+..+++++.+....+.|.++.++|.+--+. ..+-+.+.+.++++++|..+..++ .++++.++|+.+.+.
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 566777779999999999999999999988776554 578888999999999998776665 478889999999887
Q ss_pred cccc--------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhH
Q 024405 152 TELS--------FNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAP 198 (268)
Q Consensus 152 ~~~~--------~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~ 198 (268)
+|.+ ....|+...+++.+.|..|....|-. +.|+++...=++.
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqai 173 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAI 173 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHH
Confidence 5521 23579999999999999999997652 4677777664433
No 52
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.87 E-value=0.00021 Score=60.96 Aligned_cols=126 Identities=11% Similarity=-0.012 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHH----HHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHH
Q 024405 13 SLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFI----CSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFV 88 (268)
Q Consensus 13 ~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~----~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (268)
.+.+.++=.++.......+|.. +.+ |...++.|.. .+.++.... + +. ++.+.+..+. .+..+++
T Consensus 153 Gi~~~l~sg~~y~~~~~~~~~~----~~~-~~~~~~~~~~g~~~~~~~~~~~~---~--~~-~~~~~~~~~~-~~~~Gi~ 220 (290)
T TIGR00776 153 GILLLLMSTIGYLVYVVVAKAF----GVD-GLSVLLPQAIGMVIGGIIFNLGH---I--LA-KPLKKYAILL-NILPGLM 220 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCC-cceehhHHHHHHHHHHHHHHHHH---h--cc-cchHHHHHHH-HHHHHHH
Confidence 4443333344444445566754 356 8887666655 333322222 1 11 1122233343 4447888
Q ss_pred HHHHHHHhhhhhc-ccchhHHHHHHhHHHHHHHHHHHHHhheecCcchh----hhhhheeehheeee
Q 024405 89 FCINIVLGNVSLR-YIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIW----ASLVPIVGGILLTS 150 (268)
Q Consensus 89 ~~~~~~~~~~al~-~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~----~~~~l~~~Gv~l~~ 150 (268)
....+.++..+.+ +.+++.+.++.+..|+...+.+.+++||+.+++++ +|.++.++|+.+..
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 8888899999999 99999999999999999999999999999999999 99999988887654
No 53
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.73 E-value=7.7e-05 Score=55.40 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHH--HhheecCcchhhhhhheeehheeeeccc
Q 024405 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWL--VWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~--~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
+...-..+.+...+++.+++..+.+.+.-+.+..++.+.+.++. +++|+++..+++|+.++++|+.++..++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 44455567899999999999999999999999999889888885 8999999999999999999999887544
No 54
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.61 E-value=0.0019 Score=54.40 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=67.4
Q ss_pred hhhhHHHHHHHHHHH-HHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecc
Q 024405 76 EDRWRRIFPMSFVFC-INIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 152 (268)
...+......+++.. ..+.+.+.+++..+++..+.+..+.|++..+.++++++|+++..++.|..++++|+.+....
T Consensus 211 ~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 211 SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 446666666777765 58999999999999999999999999999999999999999999999999999998876543
No 55
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.52 E-value=0.0016 Score=55.81 Aligned_cols=138 Identities=10% Similarity=0.111 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHH--hhcCC-Ccc--cChhhhhHHHHHHHH
Q 024405 13 SLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKV--LKLKP-LIT--VEPEDRWRRIFPMSF 87 (268)
Q Consensus 13 ~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~--~~~~~-~~~--~~~~~~~~~~~~~~~ 87 (268)
....+.+..++.......+|.++++++.+ |....+.....+.+...+.... .+... ..+ .+.++.+..++..++
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~-~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKS-PWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 56667777788888888999999987887 8899888888888877766554 22111 100 012335566666777
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeec
Q 024405 88 VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 88 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 151 (268)
..+......+...+..++-..+++..+--+.+.+++.+++++++++.++.|+.+++.|..+-..
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 7777777777788899999999999999999999999999999999999999999999887554
No 56
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.43 E-value=0.00033 Score=51.15 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHH-HhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecc
Q 024405 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 152 (268)
......+++.++.+...+++++|.+.+-.+ .....+.+.+.+.++++|+++..+++++.+.++|+..+...
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 344666778899999999999999987766 46899999999999999999999999999999999887543
No 57
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.37 E-value=0.054 Score=47.07 Aligned_cols=178 Identities=10% Similarity=0.040 Sum_probs=110.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hHHHHHHHHHHHHHhheec---Ccc----hhhhhhheeehhe
Q 024405 76 EDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRKYF---DWR----IWASLVPIVGGIL 147 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pv~~~l~~~~~~~e~~---~~~----~~~~~~l~~~Gv~ 147 (268)
.+.+...+..+++.+.++.....+.++.+++...-+. ..+-+...++..++++|-. +.. -..++++.++|+.
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 4466667778889999999999999999988877554 4788889999999988744 322 3578888889999
Q ss_pred eeec----ccc---------chhHHHHHHHHHHHHHHHHHH-------HHHHHHhccCCCChHHHHHHHhH---HHHHHH
Q 024405 148 LTSV----TEL---------SFNMFGFCAALFGCLATSTKT-------ILAESLLHSYKFDSINTVYYMAP---FATMIL 204 (268)
Q Consensus 148 l~~~----~~~---------~~~~~G~~~~l~s~~~~a~~~-------i~~k~~~~~~~~~~~~~~~~~~~---~~~~~l 204 (268)
+.+. .|. .....|++.++.|.+.++.|. ...+...+ .+.++.....-+.. .+..+.
T Consensus 150 l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g~~~~~~~lp~~~~~~~G~~~~ 228 (345)
T PRK13499 150 IVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LGVDPLYAALPSYVVIMGGGAIT 228 (345)
T ss_pred HHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cCCCchHHHHHHHHHHHHHHHHH
Confidence 8876 332 123689999999999999999 43333211 23455443332222 333322
Q ss_pred H-HHHHHh--ccccccccccC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024405 205 S-IPALLL--EGSGIMDWLST---HPSPWSAFIIIFSSGVLAFCLNFSIFYVIHST 254 (268)
Q Consensus 205 ~-~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 254 (268)
- ++.... ...+..+..+. .+..........+.|+.=+..++.....-++.
T Consensus 229 n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~ 284 (345)
T PRK13499 229 NLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKL 284 (345)
T ss_pred HHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 222211 11111111111 01113445666777777777777776666665
No 58
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.28 E-value=0.0047 Score=53.42 Aligned_cols=137 Identities=12% Similarity=0.159 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhh-hHHHHHHHHH
Q 024405 10 VFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDR-WRRIFPMSFV 88 (268)
Q Consensus 10 ~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 88 (268)
...++....+|.+.+ ...|+.+++ .| +......=-+++.++..+.....++....+.++..+ .......++.
T Consensus 170 Dll~l~~a~lya~~n----V~~E~~v~~--~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 170 DLLALLGAILYAVSN----VLEEKLVKK--AP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhccc--CC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence 344444444454444 445888774 45 444444444455555555444444444444433322 2222222333
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc
Q 024405 89 FCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 89 ~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
......+....++..++....+-..++.++.++.+.+++++++++..++|.++++.|.++....+
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 34444556777888999888888899999999999999999999999999999999999987654
No 59
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.28 E-value=0.00073 Score=48.67 Aligned_cols=71 Identities=18% Similarity=0.329 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecc
Q 024405 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 152 (268)
.....+.+...+.+...++++.|.+.+-.+- ....+.+.+.++++++|++++.++.++.+.++|+..+...
T Consensus 33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3345666788888889999999999887774 4788999999999999999999999999999999987543
No 60
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.24 E-value=0.0072 Score=50.43 Aligned_cols=132 Identities=12% Similarity=0.130 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccChhhhhHHHHHHHHHHHHHHHH
Q 024405 17 ILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPL-ITVEPEDRWRRIFPMSFVFCINIVL 95 (268)
Q Consensus 17 ~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (268)
+.+..+.+.+.+...|..+. .| +..-..+....-......+.......+. ........+..+...|...+....+
T Consensus 152 val~la~sf~~Ygl~RK~~~---v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~l 227 (293)
T COG2962 152 VALALALSFGLYGLLRKKLK---VD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLL 227 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcC---Cc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHH
Confidence 44555566666655555553 56 6776777777777776666655333221 1112344666677788888999999
Q ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecc
Q 024405 96 GNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (268)
Q Consensus 96 ~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 152 (268)
+..|-+.+|.+...++++..|....+++.++++|.++..+..+-+..-.|+++.+.+
T Consensus 228 f~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 228 FAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887777777766543
No 61
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0055 Score=50.04 Aligned_cols=126 Identities=9% Similarity=0.055 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHH-HHHHHH
Q 024405 17 ILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVF-CINIVL 95 (268)
Q Consensus 17 ~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 95 (268)
.+.-..++.......|.+=+. -+ .-.-...-+.++.++.+++.... .-+.+..++.....+..+++. ++.+.+
T Consensus 153 Al~AG~~Wa~YIv~G~r~g~~--~~-g~~g~a~gm~vAaviv~Pig~~~---ag~~l~~p~ll~laLgvavlSSalPYsL 226 (292)
T COG5006 153 ALGAGACWALYIVLGQRAGRA--EH-GTAGVAVGMLVAALIVLPIGAAQ---AGPALFSPSLLPLALGVAVLSSALPYSL 226 (292)
T ss_pred HHHHhHHHHHHHHHcchhccc--CC-CchHHHHHHHHHHHHHhhhhhhh---cchhhcChHHHHHHHHHHHHhcccchHH
Confidence 334444555555444544431 22 22333455556666555544321 111222333444455566665 788899
Q ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehhee
Q 024405 96 GNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 148 (268)
Q Consensus 96 ~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l 148 (268)
...+++..|...+.++.+..|.+..+.+.++++|.+|..||.++..++++..=
T Consensus 227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG 279 (292)
T COG5006 227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAG 279 (292)
T ss_pred HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999887776653
No 62
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.20 E-value=0.0017 Score=55.58 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeee
Q 024405 88 VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (268)
Q Consensus 88 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 150 (268)
.+..+..+...|+.+.|.+..+-+.+..-++.++++..++|||++++++.|..+++.|..++.
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 456777888999999999999999999999999999999999999999999999999998654
No 63
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.19 E-value=0.0013 Score=46.91 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeec
Q 024405 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 151 (268)
.......+..++.+...+++..|.+.+-.+- ....+.+.+.+.+++||+.++.+++++.+.++|+.....
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 3345666788888999999999988765544 488999999999999999999999999999999987643
No 64
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00095 Score=47.25 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHH-HHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeec
Q 024405 82 IFPMSFVFCINIVLGNVSLRYIPVSFM-QTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~al~~~~~~~~-~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 151 (268)
....-.++..++.+...|+|++|.+.+ ++-.....+.+.+.++++++|+.+..+++++.+.++|+.....
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 444556678888899999999998875 4556688999999999999999999999999999999987654
No 65
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.09 E-value=0.0018 Score=46.42 Aligned_cols=68 Identities=15% Similarity=0.279 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHH-HhHHHHHHHHHHHHHhheecCcchhhhhhheeehheee
Q 024405 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 149 (268)
.......+...+.+...+++++|.+.+-.+ .....+.+.+.+.+++||++++.+++++.+.++|+...
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 444566678888899999999998876544 45888999999999999999999999999999999865
No 66
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.83 E-value=0.006 Score=42.58 Aligned_cols=57 Identities=7% Similarity=0.177 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHH-HHHhHHHHHHHHHHHHHhheecCcchhhhhhh
Q 024405 85 MSFVFCINIVLGNVSLRYIPVSFMQ-TIKSFTPATTVVLQWLVWRKYFDWRIWASLVP 141 (268)
Q Consensus 85 ~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l 141 (268)
....+..+..+...++++.|.+.+- +......+.+.+.+..++||+.|..|+.++.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 4446788889999999999998874 45569999999999999999999999999865
No 67
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.80 E-value=0.027 Score=47.10 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=71.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHH
Q 024405 39 DFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPAT 118 (268)
Q Consensus 39 ~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~ 118 (268)
+.+ |+....=|..--.+...++..+. +++...|+.++. ...++.++..+.++..|-+.+..+..-.+..+.++.
T Consensus 161 ~~~-~~~~~lPqaiGm~i~a~i~~~~~----~~~~~~k~~~~n-il~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvI 234 (269)
T PF06800_consen 161 HVS-GWSAFLPQAIGMLIGAFIFNLFS----KKPFFEKKSWKN-ILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVI 234 (269)
T ss_pred CCC-hhHhHHHHHHHHHHHHHHHhhcc----cccccccchHHh-hHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHH
Confidence 455 77777666443333333333322 222233445554 448899999999999999999999999999999999
Q ss_pred HHHHHHHHhheecCcchh----hhhhheeehhe
Q 024405 119 TVVLQWLVWRKYFDWRIW----ASLVPIVGGIL 147 (268)
Q Consensus 119 ~~l~~~~~~~e~~~~~~~----~~~~l~~~Gv~ 147 (268)
..+.+.+++||+=++++. +++++.++|.+
T Consensus 235 StlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 235 STLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 999999999998777765 34454545543
No 68
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.67 E-value=0.066 Score=40.28 Aligned_cols=117 Identities=12% Similarity=0.168 Sum_probs=83.2
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHHHHhhhhhcccchhH
Q 024405 28 IITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSF 107 (268)
Q Consensus 28 ~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 107 (268)
..+|-.+-+. .+.|+.-++.-+..+.+.+.++..+.+..+..+. ++.+|+.++ .|++..........+...++++.
T Consensus 17 ~~~N~~L~~~--~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~-~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~ 92 (138)
T PF04657_consen 17 AAFNGQLGKA--LGSPLVASFISFGVGFILLLIILLITGRPSLASL-SSVPWWAYL-GGLLGVFFVLSNIILVPRLGAAL 92 (138)
T ss_pred HHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhcccccchh-ccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHH
Confidence 3445555443 3349999999999999998887776554332222 222444333 78888888888999999998877
Q ss_pred HHHHH-hHHHHHHHHHHHH----HhheecCcchhhhhhheeehhee
Q 024405 108 MQTIK-SFTPATTVVLQWL----VWRKYFDWRIWASLVPIVGGILL 148 (268)
Q Consensus 108 ~~~l~-~~~pv~~~l~~~~----~~~e~~~~~~~~~~~l~~~Gv~l 148 (268)
...+. .-+-+...+++.+ .-|+++++++.+++.++++|+.+
T Consensus 93 ~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 93 TTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 76554 4667777777775 34678999999999999999863
No 69
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.45 E-value=0.051 Score=44.29 Aligned_cols=64 Identities=5% Similarity=0.014 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehhee
Q 024405 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 148 (268)
Q Consensus 85 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l 148 (268)
..+..+....+..+.++|.+.....+...+.++++.+++.++++|+++..++.|..+++.|+.+
T Consensus 158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 158 VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 4455566777788899999999999999999999999999999999999999999999988764
No 70
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=96.36 E-value=0.0088 Score=43.49 Aligned_cols=87 Identities=14% Similarity=0.244 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHH-HHHHHHHH
Q 024405 169 LATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVL-AFCLNFSI 247 (268)
Q Consensus 169 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 247 (268)
++||.+.+..|+..++ .|+.+...+....+.+ +.+.....+..+..++ ++..+......+.+ ....+...
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 71 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKPFKNL------SPRQWLWLLFLGLLGTALAYLLY 71 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhccccccCC------ChhhhhhhhHhhccceehHHHHH
Confidence 4688999999998886 8999999999999998 7776666654331111 12223444444545 45566667
Q ss_pred HHHHhccCcchhhhccc
Q 024405 248 FYVIHSTTAVTFNVAGN 264 (268)
Q Consensus 248 ~~~i~~~sa~t~sv~~~ 264 (268)
++..++.++...+....
T Consensus 72 ~~a~~~~~~~~~~~~~~ 88 (126)
T PF00892_consen 72 FYALKYISASIVSILQY 88 (126)
T ss_pred HHHHHhcchhHHHHHHH
Confidence 88899999988877654
No 71
>COG2510 Predicted membrane protein [Function unknown]
Probab=96.14 E-value=0.13 Score=37.67 Aligned_cols=88 Identities=15% Similarity=0.071 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHH
Q 024405 161 FCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLA 240 (268)
Q Consensus 161 ~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (268)
.++++++++++++..++.|--.++ .||...+..-.....+.+..+....+..+ ...+.++..|..+.++|+.+
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~--vdp~~At~IRtiVi~~~l~~v~~~~g~~~-----~~~~~~~k~~lflilSGla~ 77 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEG--VDPDFATTIRTIVILIFLLIVLLVTGNWQ-----AGGEIGPKSWLFLILSGLAG 77 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHHHHHHHHhcCcee-----cccccCcceehhhhHHHHHH
Confidence 578999999999999999987665 78877777777777777777776665332 22223444578889999887
Q ss_pred HHHHHHHHHHHhccC
Q 024405 241 FCLNFSIFYVIHSTT 255 (268)
Q Consensus 241 ~~~~~~~~~~i~~~s 255 (268)
-..-+.+|..+|+-.
T Consensus 78 glswl~Yf~ALk~G~ 92 (140)
T COG2510 78 GLSWLLYFRALKKGK 92 (140)
T ss_pred HHHHHHHHHHHhcCC
Confidence 777778888877544
No 72
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.15 Score=43.35 Aligned_cols=67 Identities=9% Similarity=0.122 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeec
Q 024405 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 85 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 151 (268)
.-+.+..+-..++.|+.+.|.+..+-+.+.+.+..++++..++|||.+....+|+.++++|-.++..
T Consensus 70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 3344578888899999999999999999999999999999999999999999999999999987654
No 73
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.94 E-value=0.012 Score=50.52 Aligned_cols=139 Identities=9% Similarity=0.023 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHHHHHH-HHHHHhhcCCC---cccChhhhhHHHHH
Q 024405 11 FRSLLAILQWWVFNVTVIITNKWIFQ--KLDFKFPLSVSCIHFICSSIGAY-LVIKVLKLKPL---ITVEPEDRWRRIFP 84 (268)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~~K~~~~--~~~f~~p~~l~~~r~~~~~l~l~-~~~~~~~~~~~---~~~~~~~~~~~~~~ 84 (268)
.......+.+.+....-+++.|.+++ +++.+ +..+...+--++...++ +.....+.... ...++.-.......
T Consensus 162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 162 LFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 45556666777777777788888884 45688 88888888888887777 54433221111 11112222333333
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeee
Q 024405 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (268)
Q Consensus 85 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 150 (268)
.+.+..+.+...+..+.++++=.+++.....-+.+...++++++|+.+..+..|..+.+.|+.+-+
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 445555556677777888888888888888888888888888888778888888888888877654
No 74
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.82 E-value=0.02 Score=41.27 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH-HhHHHHHHHHHHHHHhheecCcchhhhhhheeehheee
Q 024405 78 RWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 149 (268)
++++..|. +++..+...+++.+...+.|.+.-+ .+++=++|++.++++.+|..+++.++|+.+++.|+.+.
T Consensus 41 n~~y~ipf-~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 41 NPKYIIPF-LLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 44555544 3455666677788999999988877 58999999999998888888999999999999999864
No 75
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=95.80 E-value=0.11 Score=43.37 Aligned_cols=99 Identities=6% Similarity=0.081 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccc--cccccCCCCchHHHHHHHHH
Q 024405 159 FGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGI--MDWLSTHPSPWSAFIIIFSS 236 (268)
Q Consensus 159 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 236 (268)
.|..+.++++++|+...+..|. .. +++|.++.++.+..+.+.+.+........+. ..+....+ ...+......
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 76 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQK--RPLILSLLLC 76 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCccc--chHHHHHHHH
Confidence 4889999999999999999997 34 3899999999999998887776544432110 01111111 1124456667
Q ss_pred HHHHHHHHHHHHHHHhccCcchhhhc
Q 024405 237 GVLAFCLNFSIFYVIHSTTAVTFNVA 262 (268)
Q Consensus 237 ~~~~~~~~~~~~~~i~~~sa~t~sv~ 262 (268)
|++......+.++.++.+++.+.++.
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l 102 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLG 102 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHH
Confidence 77666666777888888887776654
No 76
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=95.16 E-value=0.97 Score=37.50 Aligned_cols=131 Identities=12% Similarity=0.041 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHH-HhhcCCCcccChhhhhH-HHHHHH
Q 024405 9 SVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIK-VLKLKPLITVEPEDRWR-RIFPMS 86 (268)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 86 (268)
+......+++.-..+|......++.++++.+ -|....-.|.-...++...... ..+..+..+....+.+. .....-
T Consensus 111 ~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i 188 (244)
T PF04142_consen 111 NPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVI 188 (244)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHH
Confidence 3456677777777888888889999999655 3666666665555444443332 22211111111111111 122233
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhh
Q 024405 87 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVP 141 (268)
Q Consensus 87 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l 141 (268)
+..+.+-.....-+||.+.=.=....+...+.+.+++..+++.+++....+|..+
T Consensus 189 ~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 189 FLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 4455555566667899887788888899999999999999999999988877653
No 77
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.77 E-value=0.53 Score=35.38 Aligned_cols=94 Identities=12% Similarity=0.160 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHHHHH
Q 024405 161 FCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLA 240 (268)
Q Consensus 161 ~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (268)
.++++.+..+-+++..++.++.++.+ ||+.....+...+.+.+.......++++..+. .+.+ | ...++|+++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~---~~~p---~-w~~lGG~lG 74 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRPSLASL---SSVP---W-WAYLGGLLG 74 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhcccccchh---ccCC---h-HHhccHHHH
Confidence 46788888999999999998877643 69999999999999999888888875422221 1222 2 234489999
Q ss_pred HHHHHHHHHHHhccCcchhhhc
Q 024405 241 FCLNFSIFYVIHSTTAVTFNVA 262 (268)
Q Consensus 241 ~~~~~~~~~~i~~~sa~t~sv~ 262 (268)
...-.+....+++.++......
T Consensus 75 ~~~V~~~~~~vp~lG~~~~~~l 96 (138)
T PF04657_consen 75 VFFVLSNIILVPRLGAALTTIL 96 (138)
T ss_pred HHHHHHHHHHhhhhhHHHHHHH
Confidence 8888888888899988776543
No 78
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.41 E-value=0.59 Score=39.53 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCccc----ChhhhhHHHHH
Q 024405 9 SVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITV----EPEDRWRRIFP 84 (268)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~----~~~~~~~~~~~ 84 (268)
+.......+..+..+=...+-..+.++++++.+ ++.+.+.-.++..+.-.......+.. .+.+ ..++-+++++.
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~-~~av~F~~~hp~~~~Di~l 246 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVS-SLHMMFGVNLFSAILNGTYLILQGHL-LPAVSFIKEHPDVAFDILL 246 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCC-chHHHHHHcChhHHHHHHH
Confidence 344555666666666666666677788877777 77766666665555554443322211 1110 13678899999
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehhee
Q 024405 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 148 (268)
Q Consensus 85 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l 148 (268)
.+.+.+.+..+-++-++.-++=..+++.-+==.+..+++.+.++.+.++.|+.+..++++|..+
T Consensus 247 ~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 247 YSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 9999999998888888777666777777888899999999999999999999999988888764
No 79
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=93.78 E-value=0.072 Score=44.09 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=64.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheee
Q 024405 76 EDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 149 (268)
.++|....-+|++..++..+...+++.=-++-.++.+.+..++..+-..+++++.|++..+.|.++++...+..
T Consensus 250 gkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 250 GKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred ccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 34666666689999999999999999999999999999999999999999999999999999988777665544
No 80
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.61 E-value=0.03 Score=45.70 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=91.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hHHHHHHHHHHHHHhheecCcchh----hhhhheeehheeee
Q 024405 76 EDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRKYFDWRIW----ASLVPIVGGILLTS 150 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pv~~~l~~~~~~~e~~~~~~~----~~~~l~~~Gv~l~~ 150 (268)
...+..-+..+++.+.+...++.|.++.++|.+.-+. .++-+-+-+++++.++|..+..+. .++++.+.|+.+.+
T Consensus 56 ~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs 135 (288)
T COG4975 56 LTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTS 135 (288)
T ss_pred hhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEee
Confidence 4466777778889999999999999999988876544 478889999999999998877764 67788999999998
Q ss_pred ccccc--------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHH
Q 024405 151 VTELS--------FNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYM 196 (268)
Q Consensus 151 ~~~~~--------~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~ 196 (268)
.+|.+ ....|+...+.|.+.|..|.+..+.. +.|.++...-|
T Consensus 136 ~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPq 185 (288)
T COG4975 136 KQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQ 185 (288)
T ss_pred eeccccccccChHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHH
Confidence 86631 12478898999999999998888764 34555544443
No 81
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.68 E-value=3 Score=31.66 Aligned_cols=122 Identities=11% Similarity=0.186 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHHHHhhhhhcccch
Q 024405 26 TVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPV 105 (268)
Q Consensus 26 ~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 105 (268)
...-+|-.+-+. .+.|..-.+.-+..+..++..+...+++++.....++.+|+.+. .|.+.+............+.+
T Consensus 19 ~Q~~iN~qL~~~--~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~-GG~lGa~~vt~s~~l~p~lGa 95 (150)
T COG3238 19 LQAAINGRLARY--LGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWI-GGLLGAIFVTSSILLAPRLGA 95 (150)
T ss_pred hHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHH-ccchhhhhhhhhHHhccchhH
Confidence 333455555542 44599999999999999888777664433332222233444444 445555555555555566654
Q ss_pred hH-HHHHHhHHHHHHHHHHHHHh----heecCcchhhhhhheeehheeee
Q 024405 106 SF-MQTIKSFTPATTVVLQWLVW----RKYFDWRIWASLVPIVGGILLTS 150 (268)
Q Consensus 106 ~~-~~~l~~~~pv~~~l~~~~~~----~e~~~~~~~~~~~l~~~Gv~l~~ 150 (268)
+. .....+-+-+..++++.+=. +++++..+..++++..+|+.+..
T Consensus 96 ~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 96 ATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 44 44556667777777775432 36789999999999999955543
No 82
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.48 E-value=0.78 Score=39.04 Aligned_cols=137 Identities=9% Similarity=-0.094 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCC-----CcccChhhhhHHHHHHHH
Q 024405 13 SLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKP-----LITVEPEDRWRRIFPMSF 87 (268)
Q Consensus 13 ~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 87 (268)
...++....++........|+-.+..+++ -+.+.+...+.....+.+...+.+..+ .........+-.+...++
T Consensus 158 gY~w~~~n~~~~a~~~v~~kk~vd~~~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 158 GYSWALANCLTTAAFVVYVKKSVDSANLN-KFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccc-ceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 45566666677777777777777754555 555666666666666655554444322 000111223344444444
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeee
Q 024405 88 VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (268)
Q Consensus 88 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 150 (268)
+..+-.++..++.+..|+...++.....-..+.+...++++++.++...+|+.+.+.|-++-.
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHh
Confidence 446667788888888888888888877777777777777777788887777777776665543
No 83
>PRK13499 rhamnose-proton symporter; Provisional
Probab=92.29 E-value=3.1 Score=36.35 Aligned_cols=68 Identities=9% Similarity=0.091 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHH---HH-hHHHHHHHHHHHHHhheecC--cc----hhhhhhheeehheeeec
Q 024405 83 FPMSFVFCINIVLGNVSLRYIPVSFMQT---IK-SFTPATTVVLQWLVWRKYFD--WR----IWASLVPIVGGILLTSV 151 (268)
Q Consensus 83 ~~~~~~~~~~~~~~~~al~~~~~~~~~~---l~-~~~pv~~~l~~~~~~~e~~~--~~----~~~~~~l~~~Gv~l~~~ 151 (268)
...++.....+.++..+-...+.....+ +. ++..++..+-+. ++||+=+ ++ .++++++.++|..++..
T Consensus 264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777777765444433 55 555555555555 6888644 33 34666666666665543
No 84
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=90.16 E-value=1.6 Score=38.15 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHHHHHHHHHHHhh--cCCCcccChhhhhHHHH
Q 024405 8 WSVFRSLLAILQWWVFNVTVIITNKWIFQKL--DFKFPLSVSCIHFICSSIGAYLVIKVLK--LKPLITVEPEDRWRRIF 83 (268)
Q Consensus 8 ~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~--~f~~p~~l~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~~~~~ 83 (268)
+....++.-.++|.+-.+ +-|.=..++ +.+-|.+..+...+ +.+.+++...... ..++.+.|...+...++
T Consensus 247 lG~llaL~sA~~YavY~v----llk~~~~~eg~rvdi~lffGfvGLf-nllllwP~l~iL~~~~~e~F~lP~~~q~~~vv 321 (416)
T KOG2765|consen 247 LGNLLALLSALLYAVYTV----LLKRKIGDEGERVDIQLFFGFVGLF-NLLLLWPPLIILDFFGEERFELPSSTQFSLVV 321 (416)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhhcccccccccHHHHHHHHHHH-HHHHHhHHHHHHHHhccCcccCCCCceeEeee
Confidence 344444444445544332 225544433 57767776665543 4444443222211 22333444444554444
Q ss_pred HHHHHH-HHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc
Q 024405 84 PMSFVF-CINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 84 ~~~~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
..++.. ...=+++.+|.-.+++-.+++-.+.+....++...++.++.+++..++|...+++|.+.+...+
T Consensus 322 ~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 322 FNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 444444 6777889999999999999999999999999999999999999999999999999999887644
No 85
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=89.12 E-value=2.4 Score=34.45 Aligned_cols=122 Identities=6% Similarity=-0.027 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccC---hhhhhHHHHHHHHHHHHHH
Q 024405 17 ILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVE---PEDRWRRIFPMSFVFCINI 93 (268)
Q Consensus 17 ~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 93 (268)
+...+..+....+..|...+-.+|. -..-.++.-..+..+++.+..+.+.....+.. +.+.....+..|++-.+..
T Consensus 160 m~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiS 238 (309)
T COG5070 160 MFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGIS 238 (309)
T ss_pred EehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhh
Confidence 3444555556666666666544555 66667777777777776665554433322111 1223334555566667777
Q ss_pred HHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhh
Q 024405 94 VLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASL 139 (268)
Q Consensus 94 ~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~ 139 (268)
+..-|.++-++...+++..+..-....+.+.++++|..++.++.++
T Consensus 239 y~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~si 284 (309)
T COG5070 239 YCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSI 284 (309)
T ss_pred hccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHH
Confidence 8888889999999999998888777777777777666665555444
No 86
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.63 E-value=7.3 Score=29.62 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhccccccccccCCCCchHHHHHHHHHH
Q 024405 158 MFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSG 237 (268)
Q Consensus 158 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (268)
+...+..+.+..+-..+.-.+.++.+..+ +|......+...|...+..+....+.....+ ...+.+ | .....|
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a--~~~~~p---w-W~~~GG 76 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLA--AVASAP---W-WAWIGG 76 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchh--hccCCc---h-HHHHcc
Confidence 45677888899999999999988877644 7888888888999988888877755432222 111222 2 334556
Q ss_pred HHHHHHHHHHHHHHhccCcchhhh
Q 024405 238 VLAFCLNFSIFYVIHSTTAVTFNV 261 (268)
Q Consensus 238 ~~~~~~~~~~~~~i~~~sa~t~sv 261 (268)
+++..+-++.....++.++.+...
T Consensus 77 ~lGa~~vt~s~~l~p~lGa~~t~~ 100 (150)
T COG3238 77 LLGAIFVTSSILLAPRLGAATTIA 100 (150)
T ss_pred chhhhhhhhhHHhccchhHHHHHH
Confidence 888888777788888888876654
No 87
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=84.60 E-value=0.58 Score=38.13 Aligned_cols=73 Identities=8% Similarity=0.114 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheee
Q 024405 77 DRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (268)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 149 (268)
..+..+...++..+++..+.+.-..+-++=.-+++..+--.|+.+.+.++++...+.+||++.++++.|...-
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 4566677777877888877777777766666666667778899999999999999999999999988887653
No 88
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=80.05 E-value=0.58 Score=38.41 Aligned_cols=70 Identities=9% Similarity=0.020 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhh----hhhheeehhe
Q 024405 78 RWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWA----SLVPIVGGIL 147 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~----~~~l~~~Gv~ 147 (268)
+-..-...++.++.++.+...|-+....+..-.+..+..+...+-+.+++|||=+++++. ++++.++|..
T Consensus 208 ~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai 281 (288)
T COG4975 208 YTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAI 281 (288)
T ss_pred HHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhh
Confidence 333444578888888888888888888888878888888888888889999988888754 3344444444
No 89
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=70.17 E-value=1.4 Score=36.81 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHH-hhee-cCcchhhhhhheeehheeeecccc--chhHHHHHHHHHHHHHHHHHHHHH
Q 024405 103 IPVSFMQTIKSFTPATTVVLQWLV-WRKY-FDWRIWASLVPIVGGILLTSVTEL--SFNMFGFCAALFGCLATSTKTILA 178 (268)
Q Consensus 103 ~~~~~~~~l~~~~pv~~~l~~~~~-~~e~-~~~~~~~~~~l~~~Gv~l~~~~~~--~~~~~G~~~~l~s~~~~a~~~i~~ 178 (268)
.+-+..+++.|...+.+.++-.++ +||| .-..-.+|+++++.-..+...-.. +.-..|+++.+++....-.-+.+.
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym 126 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYM 126 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666655555544333 4555 445555666655555444443332 233567655444443322222232
Q ss_pred HHHhccCCCChHHHHHHH-hHHHHHHHHHHHHHh
Q 024405 179 ESLLHSYKFDSINTVYYM-APFATMILSIPALLL 211 (268)
Q Consensus 179 k~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 211 (268)
. +++++.-+-++++.+- .+.-.+++++++.+.
T Consensus 127 ~-lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L 159 (381)
T PF05297_consen 127 W-LLRELGASFWTILAFCLAFLLAIVLLIIAVLL 159 (381)
T ss_dssp ----------------------------------
T ss_pred H-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 5566666777766643 333334444444443
No 90
>PRK07668 hypothetical protein; Validated
Probab=58.15 E-value=1.1e+02 Score=25.57 Aligned_cols=93 Identities=15% Similarity=0.246 Sum_probs=44.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHH-HHHHH-HHHHHHHHHHHHHHhhcCCCcccChhhhhHHH
Q 024405 5 LCTWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLS-VSCIH-FICSSIGAYLVIKVLKLKPLITVEPEDRWRRI 82 (268)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~-l~~~r-~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
.+.++.+....+...+....+...+++|+ +|+|.. ++.+| ++.+.+++++.... .. .-+.|...
T Consensus 137 ~~~~~~i~~~~~~~~p~~l~i~i~~l~k~------yp~~~~~ls~~qs~il~~~~~i~~~~~-~~-------~~~~~~~~ 202 (254)
T PRK07668 137 LTEKWFLIIYLVILIPMLLIVAIMFLNKW------YGTPMLQFTQMQSYILAGLIFLITVII-NI-------YFLGWFGL 202 (254)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhh------cCceEEEecchHHHHHHHHHHHHHHHH-HH-------HHHhhHHH
Confidence 34445556666666666666666666662 333222 33333 33333332222111 10 12244445
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHH
Q 024405 83 FPMSFVFCINIVLGNVSLRYIPVSFMQTI 111 (268)
Q Consensus 83 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l 111 (268)
+.+.+.......+...+.+-...+..+.+
T Consensus 203 l~l~~p~~i~~~f~~~~~~~~~~~~~~~~ 231 (254)
T PRK07668 203 LYLIIPLSIMFLFKYFNSEDVVPMIFQII 231 (254)
T ss_pred HHHHHHHHHHHHHHHccccchhHHHHHHH
Confidence 55555566666666655555555555543
No 91
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=56.19 E-value=1.4e+02 Score=26.16 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=68.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hHHHHHHHHHHHHHhhe-------ecCcchhhhhhheeehhee
Q 024405 77 DRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRK-------YFDWRIWASLVPIVGGILL 148 (268)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pv~~~l~~~~~~~e-------~~~~~~~~~~~l~~~Gv~l 148 (268)
+........+++...+-..+-.+.+|+..+..+-+. -+..++-.++-.++.++ +-....+++++++++|+.+
T Consensus 71 ~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai 150 (344)
T PF06379_consen 71 STLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAI 150 (344)
T ss_pred hHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHH
Confidence 345555667888877888888889998877765332 23444444444444332 2234567889999999998
Q ss_pred eecc----c-------cchh-HHHHHHHHHHHHHHHHHHHHHHH
Q 024405 149 TSVT----E-------LSFN-MFGFCAALFGCLATSTKTILAES 180 (268)
Q Consensus 149 ~~~~----~-------~~~~-~~G~~~~l~s~~~~a~~~i~~k~ 180 (268)
.... | .+++ ..|.+.++.|.+..+..+.-...
T Consensus 151 ~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~a 194 (344)
T PF06379_consen 151 CGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDA 194 (344)
T ss_pred HhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 7531 1 1222 48999999999998887766543
No 92
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=55.15 E-value=1e+02 Score=26.34 Aligned_cols=130 Identities=13% Similarity=0.160 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cc-----ChhhhhHHHH--------
Q 024405 18 LQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLI-TV-----EPEDRWRRIF-------- 83 (268)
Q Consensus 18 ~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~-~~-----~~~~~~~~~~-------- 83 (268)
+.-......+..=.|++.. .+.+ |.....++-.++...+-.........+.. +. ...++|...+
T Consensus 183 iaqiivaiQ~v~Eek~l~~-~nV~-pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~ 260 (372)
T KOG3912|consen 183 IAQIIVAIQMVCEEKQLKK-SNVA-PLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPS 260 (372)
T ss_pred HHHHHHHHHHHHHHhhhhh-ccCC-HHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCch
Confidence 3344445555544454444 4788 99999999888855543332222212211 00 0012222221
Q ss_pred --HHHHHHHHHHHHhhhh----hcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheee
Q 024405 84 --PMSFVFCINIVLGNVS----LRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (268)
Q Consensus 84 --~~~~~~~~~~~~~~~a----l~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 149 (268)
.....+..+..+.|.+ -|+.++.+-.++-+.-..+.-+++.....|++...|+.|-++...|..+.
T Consensus 261 l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 261 LAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY 332 (372)
T ss_pred hHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222333333333 35667777778888778888888888899999999998888888887654
No 93
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=54.56 E-value=13 Score=26.32 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=35.5
Q ss_pred HHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc
Q 024405 109 QTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 109 ~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
+.-.-...+...+-.+.+.+++|++.++++..++++|+.++.+.+
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 333445566666777888899999999999999999999876654
No 94
>PRK02237 hypothetical protein; Provisional
Probab=53.46 E-value=14 Score=26.25 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=34.7
Q ss_pred HHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc
Q 024405 109 QTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 109 ~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
+.-.-...+...+-.+.+.+++|++.++++..++++|+.++.+.+
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 333445555666777888999999999999999999998775543
No 95
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=53.22 E-value=1.7e+02 Score=26.20 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcc
Q 024405 233 IFSSGVLAFCLNFSIFYVIHSTTAV 257 (268)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~sa~ 257 (268)
.......++...+..++.+++...+
T Consensus 354 ~~~~~~~~~~~s~i~~~~l~~~~~L 378 (399)
T PF00909_consen 354 IVVILAWSFVVSYIIFKILKKFGGL 378 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344444455566667888877653
No 96
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.45 E-value=1.8e+02 Score=24.81 Aligned_cols=110 Identities=7% Similarity=-0.035 Sum_probs=71.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhcC----CCcccChhhhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHH
Q 024405 41 KFPLSVSCIHFICSSIGAYLVIKVLKLK----PLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTP 116 (268)
Q Consensus 41 ~~p~~l~~~r~~~~~l~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p 116 (268)
+.-+.++++....+.+..++.....+.. ..+..+..+.|..+...|++.+...+...+=.|.+++=.+-+......
T Consensus 213 ~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka 292 (347)
T KOG1442|consen 213 DCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKA 292 (347)
T ss_pred CeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHH
Confidence 3456678888888877777766554332 222333334555556666666444444445566666666666555666
Q ss_pred HHHHHHHHHHhheecCcchhhhhhheeehheeee
Q 024405 117 ATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (268)
Q Consensus 117 v~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 150 (268)
..=.+++..+++|.-+...|-+-+++.+|-....
T Consensus 293 ~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT 326 (347)
T KOG1442|consen 293 AAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYT 326 (347)
T ss_pred HHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHH
Confidence 6667788889999888888888888888776554
No 97
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=44.06 E-value=27 Score=24.81 Aligned_cols=70 Identities=21% Similarity=0.176 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcccchhHHH-HHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehhee
Q 024405 78 RWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQ-TIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 148 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l 148 (268)
.|.+..|.. ++-.+..+++.-+++.+.+.+. +-.+++-.++.+.+..+..|..-++.+.+..+.+.|..+
T Consensus 52 ~w~Y~iPFl-lNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 52 NWEYLIPFL-LNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred hHHHHHHHH-HHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 344444433 3445566677778888777665 445567888889888776667778888888888887764
No 98
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=40.58 E-value=1.3e+02 Score=21.36 Aligned_cols=55 Identities=9% Similarity=0.234 Sum_probs=33.9
Q ss_pred HhhhhhcccchhHHHHHHhH-HHHHHHHHHHHHhheecCcchhhhhhheeehheee
Q 024405 95 LGNVSLRYIPVSFMQTIKSF-TPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (268)
Q Consensus 95 ~~~~al~~~~~~~~~~l~~~-~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 149 (268)
.+-.+.+.-+.+--.+++=. +-.....++.+++||++++....|-.+.++++.++
T Consensus 51 ANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 51 ANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred chhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 33344444444444344332 22333556778899999999999988777776554
No 99
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=38.67 E-value=29 Score=24.53 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc
Q 024405 114 FTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 114 ~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
...+...+-...+.+.+|++..+++..++++|+.++...+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 3444555556777889999999999999999998877654
No 100
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=34.08 E-value=1.9e+02 Score=24.65 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=39.5
Q ss_pred ccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc
Q 024405 102 YIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 102 ~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
.-++..++.+.-.--..+.+++++++.++++-.-.-+..+++.|+.+=...+
T Consensus 283 ~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 283 LFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 3455666666666667788999999999999888888888888888654444
No 101
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=33.75 E-value=3.3e+02 Score=23.92 Aligned_cols=140 Identities=13% Similarity=0.076 Sum_probs=83.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChh---hhh-HHH
Q 024405 7 TWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPE---DRW-RRI 82 (268)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~---~~~-~~~ 82 (268)
.-+.+....+++..+..|.-.....+.++++ -+-+..+-=.|.-+-.+..-....... ...+..+. +.+ ...
T Consensus 178 ~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~--s~~s~wi~NiqL~~~g~~f~~l~~~~~--d~~~i~~~gff~G~s~~v 253 (345)
T KOG2234|consen 178 AQNPFLGLVAVLVACFLSGFAGVYFEKILKG--SNVSLWIRNIQLYFFGILFNLLTILLQ--DGEAINEYGFFYGYSSIV 253 (345)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHHHhhc--cccccccCCccccccHHH
Confidence 3345677778888888888888888888875 233666665665444433332222211 11111111 111 111
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeee
Q 024405 83 FPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (268)
Q Consensus 83 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 150 (268)
...-+.++.+-.+...-.||.+-=.=....+...+++.+.+..+++.+++..-.+|+.+++..+.+..
T Consensus 254 w~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 254 WLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred HHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 12333344444444455677766566666778889999999888888999888888887777776665
No 102
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=30.88 E-value=3.2e+02 Score=22.87 Aligned_cols=101 Identities=8% Similarity=0.001 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHH
Q 024405 43 PLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVL 122 (268)
Q Consensus 43 p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~ 122 (268)
|+...+.......+..++.....+ . ++........|.+++.++.+..-..+.++.+....+=++.-+.+--.
T Consensus 27 g~~fQw~~~~~i~~~g~~v~~~~~---~-----p~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~ 98 (254)
T PF07857_consen 27 GFFFQWVMCSGIFLVGLVVNLILG---F-----PPFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWA 98 (254)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcC---C-----CcceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 777777776666665554444321 1 11333445577888888888888999999999998888755544444
Q ss_pred HH-H-Hhh---eec--Ccchhhhhhheeehheeeec
Q 024405 123 QW-L-VWR---KYF--DWRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 123 ~~-~-~~~---e~~--~~~~~~~~~l~~~Gv~l~~~ 151 (268)
.- + +++ |.+ .+..+++++++++|..+...
T Consensus 99 ~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 99 SGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred HhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 32 2 232 222 45667888888888886643
No 103
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=29.74 E-value=3.5e+02 Score=22.92 Aligned_cols=121 Identities=7% Similarity=0.146 Sum_probs=69.2
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCcccChhhhhHHHHHHHHHHHHHHHHhhhhhcccchh
Q 024405 27 VIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVS 106 (268)
Q Consensus 27 ~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 106 (268)
++...+++.+ +-+ -..+...--+++.++..+-.. ..+++.....|.......+..++..++-..+...-++..++.
T Consensus 181 SNv~EEflvk--n~d-~~elm~~lgLfGaIIsaIQ~i-~~~~~~~tl~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT 256 (336)
T KOG2766|consen 181 SNVSEEFLVK--NAD-RVELMGFLGLFGAIISAIQFI-FERHHVSTLHWDSAIFLYLRFALTMFLLYSLAPILIKTNSAT 256 (336)
T ss_pred ccccHHHHHh--cCc-HHHHHHHHHHHHHHHHHHHHh-hhccceeeEeehHHHHHHHHHHHHHHHHHHhhHHheecCCce
Confidence 3455577776 455 334444444556666554432 233333333332223333333333333334444445666776
Q ss_pred HHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc
Q 024405 107 FMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 107 ~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
.+.+-.-+.-.|..++ ..++-+.+|.-.++......|..+-+-.|
T Consensus 257 ~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 257 MFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred EEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 6666666777777777 45666699999999999999999886544
No 104
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=29.49 E-value=98 Score=26.32 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 024405 21 WVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSS 55 (268)
Q Consensus 21 ~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~ 55 (268)
...|..+.+.++..++++|=+ |=.-.++-.+...
T Consensus 173 l~~sa~mgiyqE~~Y~kyGKh-~~EalFytH~LsL 206 (330)
T KOG1583|consen 173 LLLSAYMGIYQETTYQKYGKH-WKEALFYTHFLSL 206 (330)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHhcc
Confidence 366677777888888875544 6666655554443
No 105
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=27.90 E-value=3.1e+02 Score=21.69 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHH---HhheecCcchhhhhhheeehheeeeccc
Q 024405 113 SFTPATTVVLQWL---VWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 113 ~~~pv~~~l~~~~---~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
...|....+++-. +.-.|.+++-.+.+.-.+.|+.....++
T Consensus 36 ~~~p~i~al~~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G~ 79 (189)
T TIGR02185 36 LFSPGITAFLVGIIFFLMVAKVPKRGVIFIFGILLGLLFFLMGM 79 (189)
T ss_pred HHHHHHHHHHHhHHHhhhhhhcCCccHHHHHHHHHHHHHHHHcc
Confidence 3556666665533 3456666666666666666666544333
No 106
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=25.07 E-value=5.3e+02 Score=23.50 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=33.4
Q ss_pred HhheecCcchhhh--hhheeehheeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 024405 126 VWRKYFDWRIWAS--LVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHSYK 186 (268)
Q Consensus 126 ~~~e~~~~~~~~~--~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~ 186 (268)
+.|.+..+-|++- +.+++-=+.+++..| +.+ ++....+.|+.|-++-..+.+.++|+.+
T Consensus 318 ~~~~~iHpiQY~LVGlAl~lFYlLLLSlSE-hi~-F~~AYliAa~a~i~Li~~Y~~~vl~~~k 378 (430)
T PF06123_consen 318 LSKLRIHPIQYLLVGLALVLFYLLLLSLSE-HIG-FNLAYLIAALACIGLISLYLSSVLKSWK 378 (430)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHh-hhc-hHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3455667777643 333332223334344 111 3556677777777777788888887644
No 107
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=24.85 E-value=74 Score=23.69 Aligned_cols=30 Identities=20% Similarity=0.063 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024405 155 SFNMFGFCAALFGCLATSTKTILAESLLHS 184 (268)
Q Consensus 155 ~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~ 184 (268)
+.+.+|.++.-.-.+.|++|.+++|.+-++
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~ed 131 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLDED 131 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccCCC
Confidence 446788888888899999999999987544
No 108
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=24.20 E-value=2.2e+02 Score=18.74 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=22.8
Q ss_pred HHHHHHHHHhccCCCChHHHHH-HHhHHHHHHHHHHHHHhcc
Q 024405 173 TKTILAESLLHSYKFDSINTVY-YMAPFATMILSIPALLLEG 213 (268)
Q Consensus 173 ~~~i~~k~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 213 (268)
.+.+.++|. +-+.....+ +.++.|..+++..+...++
T Consensus 15 ~QW~~SEk~----k~sv~P~~FW~lSl~Gs~lll~Y~i~r~D 52 (72)
T PF07578_consen 15 VQWIYSEKA----KKSVVPVAFWYLSLIGSLLLLIYAIIRKD 52 (72)
T ss_pred HHHHHHHHc----CCCCCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555552 223333344 6688888888888888654
No 109
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=23.84 E-value=5.2e+02 Score=23.02 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=30.8
Q ss_pred hhcccchhHHHHHHhHHHHHHHHHHHHHhheecC--cchhhhhhheeehheeeec
Q 024405 99 SLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFD--WRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 99 al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~--~~~~~~~~l~~~Gv~l~~~ 151 (268)
+-...+.+......-......+++++...|++.+ ....+++++..+++.+-..
T Consensus 152 a~~~~~~p~~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll~~~v~~G~~ 206 (376)
T PF02554_consen 152 ANTFVNSPWAATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLLLLAVWLGMY 206 (376)
T ss_pred HHHhccChhHHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHHHHHHHhhhh
Confidence 3334444455555556666677777777676654 4455666666655555443
No 110
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=23.73 E-value=5.5e+02 Score=23.62 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH
Q 024405 11 FRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIG 57 (268)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~~K~~~~~~~f~~p~~l~~~r~~~~~l~ 57 (268)
..++.....-...++.++ |+..+.-|++=......-.....++
T Consensus 336 ~~ai~~s~~~~~~~V~Ln----y~~P~~vF~~v~s~s~~~~l~vW~~ 378 (462)
T COG1113 336 VNAILLSAVVLLLGVVLN----YILPEKVFELVTSSSGLGLLFVWLM 378 (462)
T ss_pred HHHHHHHHHHHHHHHHHH----hhcchhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554 3333323444444444444444433
No 111
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.04 E-value=53 Score=22.98 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=23.9
Q ss_pred HHHHHHHhheecCcchhhhhhheeehheee
Q 024405 120 VVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (268)
Q Consensus 120 ~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 149 (268)
..++.+.+||..++..+.+..+..+|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 346777899999999999888877777654
No 112
>PRK10666 ammonium transporter; Provisional
Probab=21.90 E-value=6.1e+02 Score=23.08 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcch
Q 024405 233 IFSSGVLAFCLNFSIFYVIHSTTAVT 258 (268)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~sa~t 258 (268)
......-++...+..++.+++..++-
T Consensus 381 ~~~~~~~~~~~t~ii~~il~~~~~lR 406 (428)
T PRK10666 381 IAITIVWSGVVAFIGYKLADLTVGLR 406 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 33344445566677788888876653
No 113
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=21.74 E-value=6e+02 Score=22.96 Aligned_cols=138 Identities=13% Similarity=0.101 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccccchhHHH-HHHHHHHHH-HHHHHHHHHHHHhccCCCChHH
Q 024405 114 FTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFG-FCAALFGCL-ATSTKTILAESLLHSYKFDSIN 191 (268)
Q Consensus 114 ~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G-~~~~l~s~~-~~a~~~i~~k~~~~~~~~~~~~ 191 (268)
..-+--++.+++. ++|++..-.++ -.++|.+-++-...-.++.| .+.++.+.+ |+-....+-||+.-|..++.+.
T Consensus 239 ~g~l~w~~~e~~~-~~Kp~~lg~~s--G~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~l~~DD~ld~f~ 315 (409)
T COG0004 239 AGALGWMLIEWLR-NGKPSLLGAAS--GAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKKLGVDDALDVFG 315 (409)
T ss_pred HHHHHHHHHHHHH-cCCCchhhhhh--HHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccee
Confidence 3344455566655 66776655544 34566665553333334333 444444444 4444333444332222233333
Q ss_pred HHHHHhHHHHHHHHHHHHHhccc--cccccccCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 024405 192 TVYYMAPFATMILSIPALLLEGS--GIMDWLSTHPSP-WSAFIIIFSSGVLAFCLNFSIFYVIHSTTAV 257 (268)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~sa~ 257 (268)
.=..-...+.+.. .++.++. ....+....... ............-++...+..++.++++-.+
T Consensus 316 vHGvgGi~G~i~~---GiFa~~~~~~~~G~~~~~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~~~gL 381 (409)
T COG0004 316 VHGVGGIVGAILT---GIFAAPAVGGGGGLFYGGGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLIIGL 381 (409)
T ss_pred ccchhhHHHHHHH---HHhcCccccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 2223333333333 3333221 001111100011 1123344555555666677777777776553
No 114
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=21.57 E-value=3.5e+02 Score=20.37 Aligned_cols=27 Identities=4% Similarity=-0.031 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024405 157 NMFGFCAALFGCLATSTKTILAESLLH 183 (268)
Q Consensus 157 ~~~G~~~~l~s~~~~a~~~i~~k~~~~ 183 (268)
+..+.+..+.++..|.-|...+||..+
T Consensus 119 ~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 119 AIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 356788899999999999999998743
No 115
>PRK11715 inner membrane protein; Provisional
Probab=20.96 E-value=6.5e+02 Score=23.01 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=39.2
Q ss_pred HHhHHHHHHHHHHHHHh-----heecCcchhhh--hhheeehheeeeccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024405 111 IKSFTPATTVVLQWLVW-----RKYFDWRIWAS--LVPIVGGILLTSVTE-LSFNMFGFCAALFGCLATSTKTILAESLL 182 (268)
Q Consensus 111 l~~~~pv~~~l~~~~~~-----~e~~~~~~~~~--~~l~~~Gv~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~i~~k~~~ 182 (268)
+|+..-+...-+..+++ |.+..+-|+.- +.+++-=+.+++..| .. ++..+.+.|+.|-.+-..+.+..+
T Consensus 304 ~KYgiLFI~LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHig---F~~AYliAa~a~v~li~~Y~~~vl 380 (436)
T PRK11715 304 VKYAILFIALTFAAFFLFELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIG---FTLAYLIAALACVLLIGFYLSAVL 380 (436)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhc---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443 45666666643 333332233334444 22 455677777777777778888887
Q ss_pred ccCC
Q 024405 183 HSYK 186 (268)
Q Consensus 183 ~~~~ 186 (268)
++.+
T Consensus 381 ~~~k 384 (436)
T PRK11715 381 RSWK 384 (436)
T ss_pred hcch
Confidence 7654
No 116
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=20.51 E-value=4.8e+02 Score=21.36 Aligned_cols=76 Identities=9% Similarity=-0.062 Sum_probs=36.4
Q ss_pred ccChhhhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHH---HHHHHHhheecCcchhhhhhheeehhe
Q 024405 72 TVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTV---VLQWLVWRKYFDWRIWASLVPIVGGIL 147 (268)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~---l~~~~~~~e~~~~~~~~~~~l~~~Gv~ 147 (268)
+.+++..+-...|.-++.+..........+..+.+...+-....-++.. ..+.++++.+.+....++-.+.+.|..
T Consensus 95 ~~s~~t~lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if~i~il~ss~i~r~~~~~~p~~LG~~Mi~~Gly 173 (224)
T PF09930_consen 95 DSSRRTFLALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIFFILILLSSFIFRRLKKPYPIILGNFMIFLGLY 173 (224)
T ss_pred CCcccchhhhhcCchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 3344555666666666664444444444445555555544444433332 223333334444455555555555544
No 117
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=20.19 E-value=4.2e+02 Score=20.57 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=27.3
Q ss_pred eeehheeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024405 142 IVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHS 184 (268)
Q Consensus 142 ~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~ 184 (268)
.+.|+.+....+.+.-....+.++.+++.+++..++..-+.++
T Consensus 115 aVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~iRER 157 (193)
T COG4657 115 AVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAIRER 157 (193)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Confidence 3456666665554444456777777888777777776655443
Done!