Query 024405
Match_columns 268
No_of_seqs 142 out of 1479
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 07:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 6.3E-07 2.2E-11 63.8 5.5 71 83-153 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.2 6.4E-07 2.2E-11 66.1 3.4 71 83-153 34-105 (137)
3 4dve_A Biotin transporter BIOY 28.0 2E+02 0.0068 21.9 9.0 95 72-168 10-109 (198)
4 2b2h_A AMT-1, ammonium transpo 18.3 4.5E+02 0.015 22.4 16.8 24 234-257 346-369 (399)
5 3b9w_A Ammonium transporter fa 16.3 5.1E+02 0.017 22.2 17.3 90 80-171 178-273 (407)
6 2hac_A T-cell surface glycopro 8.0 2.1E+02 0.0072 14.8 1.6 18 117-134 14-31 (33)
7 1v54_K IHQ, cytochrome C oxida 3.7 7.6E+02 0.026 14.3 3.4 32 159-190 13-45 (56)
8 2gfp_A EMRD, multidrug resista 3.5 1.5E+03 0.053 17.6 8.2 32 105-136 34-67 (375)
9 2y69_K Cytochrome C oxidase po 3.2 1E+03 0.035 14.9 3.3 33 158-190 36-69 (80)
10 3hd6_A Ammonium transporter RH 3.2 2.2E+03 0.075 18.7 16.3 24 233-256 403-426 (490)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.34 E-value=6.3e-07 Score=63.84 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHH-HhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc
Q 024405 83 FPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 83 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
....+.+.+.+.+...++++.|.+.+..+ ....|+++.+.+.+++||++++.+++++.++++|+.+....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44555678889999999999999999888 899999999999999999999999999999999999876544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.22 E-value=6.4e-07 Score=66.15 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHH-HhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeeccc
Q 024405 83 FPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (268)
Q Consensus 83 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 153 (268)
....+.+.+.+.+.+.++++.+++.+..+ .+..|+++.++++++++|++++.+++|+.++++|+.+....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44555678899999999999999988888 899999999999999999999999999999999999886543
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=28.02 E-value=2e+02 Score=21.90 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=58.3
Q ss_pred ccChhhhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeec
Q 024405 72 TVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (268)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 151 (268)
..+++++.+.+...+++-++...+...+ .++.|...+=...+...+++.+.++..++=.....+=+.+..+|+=+...
T Consensus 10 am~~~~k~r~l~~~alfaAliavla~i~--~Ipip~~pVPiTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFag 87 (198)
T 4dve_A 10 AMTNNQKVKTLTYSAFMTAFIIILGFLP--GIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTG 87 (198)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTSC--CBCCSSSSCCBCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTT
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCCCcCccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccC
Confidence 4556667788887777777766666542 12222222223467788888888777776666666667778888877765
Q ss_pred cccch-----hHHHHHHHHHHH
Q 024405 152 TELSF-----NMFGFCAALFGC 168 (268)
Q Consensus 152 ~~~~~-----~~~G~~~~l~s~ 168 (268)
+.... ...|++++..-+
T Consensus 88 g~gG~~~l~gPTgGYLiGF~~a 109 (198)
T 4dve_A 88 GNGGAASFLGPSGGYRIAWLFT 109 (198)
T ss_dssp TBCCSGGGGSTTHHHHHHHHHH
T ss_pred CCCchhHHhcchhHHHHHHHHH
Confidence 43221 235666555443
No 4
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=18.25 E-value=4.5e+02 Score=22.41 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcc
Q 024405 234 FSSGVLAFCLNFSIFYVIHSTTAV 257 (268)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~sa~ 257 (268)
......++...+..++.++++..+
T Consensus 346 ~~~~~~~~v~~~i~~~il~~~~gl 369 (399)
T 2b2h_A 346 ASTTAYAFLVTLILAKAVDAAVGL 369 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Confidence 334444555666667888876553
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=16.34 E-value=5.1e+02 Score=22.16 Aligned_cols=90 Identities=12% Similarity=-0.084 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHH-----HHHhHHHHHHHHHHHHHhheecCcchhhhhhheeehheeeecccc
Q 024405 80 RRIFPMSFVFCINIVLGNVSLRYIPVSFMQ-----TIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL 154 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~l~~~~pv~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~ 154 (268)
........+........|-++...+..-.. +..+..-+..++++++..++|++......- .++|.+-++-...
T Consensus 178 ~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~~~~~~nG--~LAGLVAITa~~~ 255 (407)
T 3b9w_A 178 RFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMANA--ALAGGVAIGSVCN 255 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHH--TTHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHh--hhhhhheeccCCC
Confidence 333334444455666667664332211111 222233333444555445566766554442 3444444432222
Q ss_pred chhH-HHHHHHHHHHHHH
Q 024405 155 SFNM-FGFCAALFGCLAT 171 (268)
Q Consensus 155 ~~~~-~G~~~~l~s~~~~ 171 (268)
-.++ ..++.++++.+..
T Consensus 256 ~v~p~~A~iIG~iaG~i~ 273 (407)
T 3b9w_A 256 IVGPVGAFVIGLLGGAIS 273 (407)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 2333 3345555555543
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=8.05 E-value=2.1e+02 Score=14.84 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhheecCcc
Q 024405 117 ATTVVLQWLVWRKYFDWR 134 (268)
Q Consensus 117 v~~~l~~~~~~~e~~~~~ 134 (268)
+.-.++..++.|||+++.
T Consensus 14 iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 14 IYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 334556666777777653
No 7
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=3.72 E-value=7.6e+02 Score=14.33 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=19.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhccCCCChH
Q 024405 159 FGF-CAALFGCLATSTKTILAESLLHSYKFDSI 190 (268)
Q Consensus 159 ~G~-~~~l~s~~~~a~~~i~~k~~~~~~~~~~~ 190 (268)
.|. +++-.+++|-+.+....-++--+.+++|.
T Consensus 13 YGn~~L~~Ga~FC~a~W~y~~TQ~GIeWnlSPV 45 (56)
T 1v54_K 13 YGNAVLASGATFCVAVWVYMATQIGIEWNPSPV 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCT
T ss_pred cCceeeecchhhhHhhHhhhheeeceeeccCcc
Confidence 454 45556677878877766665444455553
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=3.50 E-value=1.5e+03 Score=17.57 Aligned_cols=32 Identities=16% Similarity=-0.073 Sum_probs=13.2
Q ss_pred hhHHHHHHhHHHHHHHHHHHHH--hheecCcchh
Q 024405 105 VSFMQTIKSFTPATTVVLQWLV--WRKYFDWRIW 136 (268)
Q Consensus 105 ~~~~~~l~~~~pv~~~l~~~~~--~~e~~~~~~~ 136 (268)
......+.+...+...+.+.+. ..||..+++.
T Consensus 34 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 67 (375)
T 2gfp_A 34 EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV 67 (375)
T ss_dssp THHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 3333444444444444433333 2345555544
No 9
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=3.18 E-value=1e+03 Score=14.92 Aligned_cols=33 Identities=9% Similarity=0.076 Sum_probs=20.3
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhccCCCChH
Q 024405 158 MFGF-CAALFGCLATSTKTILAESLLHSYKFDSI 190 (268)
Q Consensus 158 ~~G~-~~~l~s~~~~a~~~i~~k~~~~~~~~~~~ 190 (268)
-.|. +++=.+++|-+.+....-++--+.+++|.
T Consensus 36 KYGn~~L~~Ga~FC~a~W~y~~TQ~GIeWnlSPV 69 (80)
T 2y69_K 36 KYGNAVLASGATFCVAVWVYMATQIGIEWNPSPV 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCT
T ss_pred hcCceeeecchhHHHhhHHHhheecceeecCCcc
Confidence 3564 45556677888877776665444555554
No 10
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=3.16 E-value=2.2e+03 Score=18.74 Aligned_cols=24 Identities=4% Similarity=-0.010 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCc
Q 024405 233 IFSSGVLAFCLNFSIFYVIHSTTA 256 (268)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~sa 256 (268)
+......++...+...+.++++..
T Consensus 403 v~~~~~~a~v~~~ii~~iLk~~~~ 426 (490)
T 3hd6_A 403 LLVTLAMALMGGIIVGLILRLPFW 426 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 333444455556666777777643
Done!