Query 024405
Match_columns 268
No_of_seqs 142 out of 1479
Neff 9.6
Searched_HMMs 13730
Date Mon Mar 25 07:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024405.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024405hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 29.5 1.2E+02 0.0089 23.7 21.6 22 235-256 359-380 (383)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 13.6 65 0.0047 14.3 2.9 17 159-175 3-19 (27)
3 d1v54k_ f.23.5.1 (K:) Mitochon 4.0 3.1E+02 0.023 14.2 3.4 29 162-190 12-40 (49)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.0 6.4E+02 0.047 17.8 5.4 47 85-135 8-54 (248)
5 d1pv7a_ f.38.1.2 (A:) Lactose 3.0 7.9E+02 0.057 17.0 8.2 24 236-259 385-408 (417)
6 d2p7tc1 f.14.1.1 (C:86-119) Po 2.9 3.2E+02 0.024 12.4 2.9 18 112-129 16-33 (34)
7 d1uptb_ a.193.1.1 (B:) Golgi a 2.9 1.6E+02 0.011 16.1 0.2 21 120-140 11-31 (58)
8 d2c0sa1 a.30.7.1 (A:1-57) Hypo 2.6 5.1E+02 0.037 13.8 2.2 20 34-53 20-39 (57)
9 d2h5na1 a.287.1.2 (A:1-132) Hy 1.6 8.4E+02 0.061 14.2 2.3 34 133-170 83-116 (132)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 1.3 7.3E+02 0.053 11.6 2.7 16 159-174 19-34 (37)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=29.48 E-value=1.2e+02 Score=23.69 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCc
Q 024405 235 SSGVLAFCLNFSIFYVIHSTTA 256 (268)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~sa 256 (268)
.....++...+..++.++++..
T Consensus 359 v~~~~~~~~~~ii~~il~~~~g 380 (383)
T d1u7ga_ 359 ITIVWSGVVAFIGYKLADLTVG 380 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhCcC
Confidence 3344455566666788877654
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.63 E-value=65 Score=14.28 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024405 159 FGFCAALFGCLATSTKT 175 (268)
Q Consensus 159 ~G~~~~l~s~~~~a~~~ 175 (268)
.|.+..-++.++++.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57777778888887763
No 3
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.05 E-value=3.1e+02 Score=14.16 Aligned_cols=29 Identities=7% Similarity=0.004 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChH
Q 024405 162 CAALFGCLATSTKTILAESLLHSYKFDSI 190 (268)
Q Consensus 162 ~~~l~s~~~~a~~~i~~k~~~~~~~~~~~ 190 (268)
+++-.+++|.+.+....-+.--+.+++|.
T Consensus 12 vL~~Ga~fc~avW~yv~TQ~gI~WnlSPV 40 (49)
T d1v54k_ 12 VLASGATFCVAVWVYMATQIGIEWNPSPV 40 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCCCCT
T ss_pred EEecccchhhhhhhheeeeeeeeeccccc
Confidence 45556677888877776665444455553
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.02 E-value=6.4e+02 Score=17.83 Aligned_cols=47 Identities=9% Similarity=-0.175 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhheecCcch
Q 024405 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRI 135 (268)
Q Consensus 85 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~~~~~e~~~~~~ 135 (268)
++++.++..+.....+..-+...+.+ .-+.+.++.++++.+|.-+.+
T Consensus 8 l~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~k 54 (248)
T d2r6gf1 8 LGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWR 54 (248)
T ss_dssp HHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCcccee
Confidence 44444444444444443333333222 223334444445544444333
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.00 E-value=7.9e+02 Score=17.05 Aligned_cols=24 Identities=8% Similarity=0.337 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhccCcchh
Q 024405 236 SGVLAFCLNFSIFYVIHSTTAVTF 259 (268)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~~sa~t~ 259 (268)
.+.+.........+.+++..|...
T Consensus 385 ~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 385 LGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhcCCCccch
Confidence 344444444445677777777643
No 6
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=2.94 E-value=3.2e+02 Score=12.42 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=10.0
Q ss_pred HhHHHHHHHHHHHHHhhe
Q 024405 112 KSFTPATTVVLQWLVWRK 129 (268)
Q Consensus 112 ~~~~pv~~~l~~~~~~~e 129 (268)
.+...++..+..+++.+|
T Consensus 16 ts~glv~aa~atwfvgre 33 (34)
T d2p7tc1 16 TSFGLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHhhccc
Confidence 344455556666666555
No 7
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.86 E-value=1.6e+02 Score=16.07 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=13.2
Q ss_pred HHHHHHHhheecCcchhhhhh
Q 024405 120 VVLQWLVWRKYFDWRIWASLV 140 (268)
Q Consensus 120 ~l~~~~~~~e~~~~~~~~~~~ 140 (268)
+++.+...+|..+..+.++.+
T Consensus 11 vLfeYMmG~E~~tlaKVi~av 31 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITTV 31 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHHH
Confidence 455666667776666666554
No 8
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=2.55 E-value=5.1e+02 Score=13.83 Aligned_cols=20 Identities=15% Similarity=0.173 Sum_probs=15.4
Q ss_pred HhhcCCCCchHHHHHHHHHH
Q 024405 34 IFQKLDFKFPLSVSCIHFIC 53 (268)
Q Consensus 34 ~~~~~~f~~p~~l~~~r~~~ 53 (268)
+.+.|||+.+-++.+.|=+=
T Consensus 20 Lv~~YGf~h~kvl~~SQELD 39 (57)
T d2c0sa1 20 LVEKYGFTHHKVISFSQELD 39 (57)
T ss_dssp HHHHTCTTSHHHHHHHHHHH
T ss_pred HHHHHCCCchHHHHHHHHHH
Confidence 44568999999999888553
No 9
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=1.58 E-value=8.4e+02 Score=14.24 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=20.2
Q ss_pred cchhhhhhheeehheeeeccccchhHHHHHHHHHHHHH
Q 024405 133 WRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLA 170 (268)
Q Consensus 133 ~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 170 (268)
++++.+ .-.|+.+.+.+|.+.+-. .++.+++.+|
T Consensus 83 rkkyva---sylgvimasdgdiddnel-alwtlistlc 116 (132)
T d2h5na1 83 RKKYVA---SYLGVIMASDGDIDDNEL-ALWTLISTLC 116 (132)
T ss_dssp HHHHHH---HHHHHHSCBTTBCCHHHH-HHHHHHHHHH
T ss_pred HHHHHH---HHhhheeccCCCCCccHh-HHHHHHHHHh
Confidence 444444 446788888887665532 3456666655
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.29 E-value=7.3e+02 Score=11.63 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 024405 159 FGFCAALFGCLATSTK 174 (268)
Q Consensus 159 ~G~~~~l~s~~~~a~~ 174 (268)
+|.++...-++.++-|
T Consensus 19 ~GlLlifvl~vLFssY 34 (37)
T d2axtl1 19 LGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666555555544
Done!