BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024406
         (268 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The
           Ring Finger And Chy Zinc Finger Domain-Containing
           Protein 1 From Mus Musculus
          Length = 143

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 82/132 (62%), Gaps = 10/132 (7%)

Query: 17  GCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQP 76
           GC+HY R C ++APCC++++ CR CH+          + H+L R  VK+V C  C+  Q 
Sbjct: 18  GCEHYDRACLLKAPCCDKLYTCRLCHDTN--------EDHQLDRFKVKEVQCINCEKLQH 69

Query: 77  VAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYST 136
             Q C +C    GEY+C IC  +D D  K Q+HC+ CGICRIG +E++FHC +C  C +T
Sbjct: 70  AQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 127

Query: 137 SLRNNHLCIENS 148
           +LR  H CIE+ 
Sbjct: 128 NLRGKHKCIESG 139


>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human
           Pirh2. Northeast Structural Genomics Consortium (Nesg)
           Target Ht2a
          Length = 137

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 86/147 (58%), Gaps = 12/147 (8%)

Query: 1   MEGSANERITFG--KMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHEL 58
           M  +A E    G  +   GC+HY R C ++APCC++++ CR CH+          + H+L
Sbjct: 1   MAATAREDGATGEERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNN--------EDHQL 52

Query: 59  VRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRI 118
            R  VK+V C  C+  Q   Q C  C    GEY+CDIC  +D D  K Q+HC++CGICRI
Sbjct: 53  DRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRI 110

Query: 119 GGRENYFHCKRCGSCYSTSLRNNHLCI 145
           G +E++FHC +C  C + +L+  H CI
Sbjct: 111 GPKEDFFHCLKCNLCLAMNLQGRHKCI 137


>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human
           Pirh2. Northeast Structural Genomics Consortium (Nesg)
           Target Ht2c
          Length = 79

 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 44/60 (73%)

Query: 199 SVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNT 258
           S +DM+R W+++D+E+  T MP +Y++  V ILCNDCN  + V FHI+G KC  C+SYNT
Sbjct: 7   SALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66


>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
           Northeast Structural Genomics Consortium Target Ht2b
          Length = 52

 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKS 199
           EN    +CPIC E +  S     V+ CGH +H  CY EM+K   R  CP+C  S
Sbjct: 1   ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR--CPLCMHS 52


>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
           And Chy Zinc Finger Domain-Containing Protein 1 From Mus
           Musculus
          Length = 55

 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICS 197
           CPIC E +  S     V+ CGH +H  CY EM+K   R  CP+CS
Sbjct: 8   CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR--CPLCS 50


>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
           Motif Protein 32
          Length = 88

 Score = 33.1 bits (74), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-NRYCCPICSK 198
           CPIC E   +      ++ CGHT+  +C  +++    N   CP CSK
Sbjct: 18  CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64


>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
          Length = 115

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSR 205
            C IC E L + +     + C HT+   C+   +++ +  CCP C + V   +R
Sbjct: 17  QCGICMEILVEPV----TLPCNHTLCKPCFQSTVEKAS-LCCPFCRRRVSSWTR 65


>pdb|1PZW|A Chain A, Crystal Structure Of The Zinc Finger Associated Domain
          Of The Drosophila Transcription Factor Grauzone
          Length = 80

 Score = 27.7 bits (60), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 29 APCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTE 74
          A  C +IFD     ++ A +LR  +    L   ++ +VIC+VC T+
Sbjct: 13 AQMCLQIFDVDSGESKVAEVLRQHFWFEVLPNDEISKVICNVCWTQ 58


>pdb|3IZR|MM Chain m, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 92

 Score = 27.3 bits (59), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 90  EYFCDIC-KFYDDDIEKGQFHCDDCGICRIGG 120
           +YFC+ C KF       G + C DCG  + GG
Sbjct: 36  KYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGG 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.140    0.493 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,590,118
Number of Sequences: 62578
Number of extensions: 341194
Number of successful extensions: 1013
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 997
Number of HSP's gapped (non-prelim): 27
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)