BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024406
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 220 bits (561), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 152/251 (60%), Gaps = 12/251 (4%)
Query: 17 GCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQP 76
GC+HY R C ++APCC++++ CR CH+ + H+L R VK+V C C+ Q
Sbjct: 19 GCEHYDRACLLKAPCCDKLYTCRLCHDTN--------EDHQLDRFKVKEVQCINCEKLQH 70
Query: 77 VAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYST 136
Q C +C GEY+C IC +D D K Q+HC+ CGICRIG +E++FHC +C C +T
Sbjct: 71 AQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 128
Query: 137 SLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPIC 196
+LR H CIEN +CPIC E + S V+ CGH +H CY EM+K R CP+C
Sbjct: 129 NLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR--CPLC 186
Query: 197 SKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSY 256
S +DM+R W+++D E+ T MP +Y++ V ILCNDCN + V FHI+G KC C SY
Sbjct: 187 MHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSY 246
Query: 257 NTRSIAPPVLP 267
NT +P
Sbjct: 247 NTAQAGGRRVP 257
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/260 (43%), Positives = 158/260 (60%), Gaps = 14/260 (5%)
Query: 1 MEGSANERITFG--KMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHEL 58
M +A E G + GC+HY R C ++APCC++++ CR CH+ + H+L
Sbjct: 1 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNN--------EDHQL 52
Query: 59 VRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRI 118
R VK+V C C+ Q Q C C GEY+CDIC +D D K Q+HC++CGICRI
Sbjct: 53 DRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRI 110
Query: 119 GGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHC 178
G +E++FHC +C C + +L+ H CIEN +CPIC E + S V+ CGH +H
Sbjct: 111 GPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHR 170
Query: 179 ECYHEMIKRDNRYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDT 238
CY EM+K R CP+C S +DM+R W+++D+E+ T MP +Y++ V ILCNDCN
Sbjct: 171 TCYEEMLKEGYR--CPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGR 228
Query: 239 TEVYFHIIGQKCSHCKSYNT 258
+ V FHI+G KC C+SYNT
Sbjct: 229 STVQFHILGMKCKICESYNT 248
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/253 (42%), Positives = 146/253 (57%), Gaps = 14/253 (5%)
Query: 17 GCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQP 76
GC HY R C+++ C+E + CRHCHN+A H L R V+ ++C +C QP
Sbjct: 141 GCSHYMRNCKVQCFDCHEWYTCRHCHNDACD--------HVLERPAVENMLCMICSKVQP 192
Query: 77 VAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGG--RENYFHCKRCGSCY 134
AQ C C MG Y+C+ CK +DDD K +HCDDCGICRIG ++YFHCK CG C
Sbjct: 193 AAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCL 252
Query: 135 STSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCP 194
S+ N H CIE S +CPIC EY+F+S + C H +H C+ E I+ + R CP
Sbjct: 253 PISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYR--CP 310
Query: 195 ICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCK 254
C K++I+++ ++ +D EIE MP Y I CNDCN + +H +G KC+ C
Sbjct: 311 TCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCH 370
Query: 255 SYNT--RSIAPPV 265
SYNT SI P+
Sbjct: 371 SYNTCISSIYKPL 383
>sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1
Length = 5183
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 45 AASMLRNPYDRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDI 103
A++++ D +E + + + C C P VC NCG N+ Y C C+ + D
Sbjct: 3637 ASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD- 3693
Query: 104 EKGQFHCDDCGICRIGGRENYFHCKRC 130
EK F C+ CG C+ + + K C
Sbjct: 3694 EKDPFLCNACGFCKYARFDFMLYAKPC 3720
>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2
SV=2
Length = 5194
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 45 AASMLRNPYDRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDI 103
A++++ D +E + + + C C P VC NCG N+ Y C C+ + D
Sbjct: 3648 ASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD- 3704
Query: 104 EKGQFHCDDCGICRIGGRENYFHCKRC 130
EK F C+ CG C+ + + K C
Sbjct: 3705 EKDPFLCNACGFCKYARFDFMLYAKPC 3731
>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1
Length = 5180
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 45 AASMLRNPYDRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDI 103
A++++ D +E + + + C C P VC NCG N+ Y C C+ + D
Sbjct: 3634 ASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD- 3690
Query: 104 EKGQFHCDDCGICRIGGRENYFHCKRC 130
EK F C+ CG C+ + + K C
Sbjct: 3691 EKDPFLCNACGFCKYARFDFMLYAKPC 3717
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 38.5 bits (88), Expect = 0.048, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKS 199
C IC+E +F S +N V+KCGH H C+ + +K + CP C S
Sbjct: 1931 CEICHE-IFKS-KNMRVLKCGHKFHKGCFKQWLK--GQSTCPTCGSS 1973
>sp|O74349|LTN1_SCHPO E3 ubiquitin-protein ligase listerin OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC21D10.09c PE=3 SV=1
Length = 1610
Score = 38.1 bits (87), Expect = 0.062, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 148 SMH----HHCPICYEYLF--DSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKS 199
SMH C ICY L +L N C H H C ++ K N CP+C S
Sbjct: 1549 SMHFEGVEECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCRSS 1606
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 37.0 bits (84), Expect = 0.16, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPIC 196
C IC+E +F S +N V+KCGH H C+ + +K + CP C
Sbjct: 1957 CEICHE-VFKS-KNVRVLKCGHKYHKGCFKQWLK--GQSACPAC 1996
>sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1
Length = 5322
Score = 37.0 bits (84), Expect = 0.16, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 54 DRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDD 112
D E V + + C C P VC NCG N+ + C C+ + D EK F C
Sbjct: 3779 DFFETVSGSSENLQCPRCSAAVPAYPGVCGNCGENV--FQCHKCRAINYD-EKDPFLCHS 3835
Query: 113 CGICRIGGRENYFHCKRC 130
CG C+ + + + C
Sbjct: 3836 CGFCKYAKFDFSMYARVC 3853
>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura
GN=poe PE=3 SV=1
Length = 5381
Score = 37.0 bits (84), Expect = 0.16, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 54 DRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDD 112
D E V + + C C P VC NCG N+ + C C+ + D EK F C
Sbjct: 3832 DFFETVSGSSENLQCPRCSAAVPAYPGVCGNCGENV--FQCHKCRAINYD-EKDPFLCHS 3888
Query: 113 CGICRIGGRENYFHCKRC 130
CG C+ + + + C
Sbjct: 3889 CGFCKYAKFDFSMYARVC 3906
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRTWKRIDE 212
CP+C E + + + C HT C+ E + + N CCP+C K V TW R++
Sbjct: 26 CPVCLEIFLEPV----TLPCMHTFCKPCFLETVDKSN-MCCPLCRKRV----STWARLNS 76
Query: 213 EIEATVMPEDYRH 225
+ V E +R
Sbjct: 77 RNKTLVNMELWRR 89
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
Query: 169 VMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDM-----SRTWKRIDEEIEATVMPEDY 223
++ C HT HC+C + R CP+C +SV S T+ DE+ P
Sbjct: 324 ILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVAATEDSFDSTTYSFRDED------PSLP 377
Query: 224 RHK-KVWILCNDCNDTTEVYFHIIGQKCSHC--------KSYNTRSIAPPVLP 267
H+ +W + ++G+ HC Y T S APP P
Sbjct: 378 GHRPPIWAIQVQLRSR---RLELLGRASPHCHCSTTSLEAEYTTVSSAPPEAP 427
>sp|Q9H0A6|RNF32_HUMAN RING finger protein 32 OS=Homo sapiens GN=RNF32 PE=1 SV=1
Length = 362
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKS 199
CPIC E LR ++ C H H C K N+ CP+C K+
Sbjct: 127 CPICKEEF--ELRPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRKN 171
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRT 206
S + C +C FDS +T + CGH C ++R R CCPIC + + D+ +
Sbjct: 488 GSRNGECTVC----FDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKI 543
Query: 207 WK 208
++
Sbjct: 544 YR 545
>sp|Q4R5T4|RNF32_MACFA RING finger protein 32 OS=Macaca fascicularis GN=RNF32 PE=2 SV=1
Length = 362
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKS 199
CPIC E LR ++ C H H C K N+ CP+C K+
Sbjct: 127 CPICKEEF--ELRPQVLLSCSHVFHRACLQAFEKFTNKKTCPLCRKN 171
>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1
Length = 574
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYH--EMIKRDNRYCCPICSKSVIDMSRTWK 208
C ICYE+ D T + CGH C CY +K+ CCPIC + + D+ +T++
Sbjct: 521 CTICYEHAVD----TVIYTCGHM--CLCYSCGLRLKKALHACCPICRRPIKDIIKTYR 572
>sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=Homo sapiens GN=MLL3
PE=1 SV=3
Length = 4911
Score = 35.4 bits (80), Expect = 0.49, Method: Composition-based stats.
Identities = 45/182 (24%), Positives = 66/182 (36%), Gaps = 51/182 (28%)
Query: 61 QDVKQVICSVCDTE------QPVAQVCTNCGVNMGEYFCDICKFYDDDIEKG-----QFH 109
+D K ++C CD QPV + G C IC IE G Q+H
Sbjct: 399 EDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKN--CRIC------IECGTRSSSQWH 450
Query: 110 CDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTV 169
+C IC ++ C CG CY L+ + L HC +C ++
Sbjct: 451 -HNCLICDNCYQQQDNLCPFCGKCYHPELQKDML--------HCNMCKRWV--------- 492
Query: 170 MKCGHTMHCEC----YHEM-IKRDNRYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYR 224
H EC HE+ + Y C C +M R + EE+E + DY
Sbjct: 493 -------HLECDKPTDHELDTQLKEEYICMYCKHLGAEMDRL--QPGEEVEIAELTTDYN 543
Query: 225 HK 226
++
Sbjct: 544 NE 545
>sp|O76050|NEU1A_HUMAN Neuralized-like protein 1A OS=Homo sapiens GN=NEURL PE=2 SV=1
Length = 574
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRTWK 208
C ICYE+ D T + CGH C +K+ CCPIC + + D+ +T++
Sbjct: 521 CTICYEHAVD----TVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIKTYR 572
>sp|E7FAP1|RN169_DANRE E3 ubiquitin-protein ligase RNF169 OS=Danio rerio GN=rnf169 PE=3
SV=1
Length = 630
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 127 CKRCGSCYSTSLRNNHLCIENSMHH-HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI 185
K G + R L S+ CP+C E L + + M CGH++ C+ +
Sbjct: 9 AKSTGPGQRSKSRPGALSAPLSLEEARCPVCSEILLEPV----TMPCGHSVCLHCFQRTV 64
Query: 186 KRDNRYCCPICSKSVIDMSRTWKRIDEEIEATV 218
K + CCP+C V +R R + A +
Sbjct: 65 KLIS-LCCPLCRLRVSSWARKQSREKSLVNAEL 96
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1
SV=1
Length = 555
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 161 FDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRTWK 208
FD +T + CGH C +KR R CCPIC + + D+ + ++
Sbjct: 507 FDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIYR 554
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSR 205
CP+C E + + C HT HC+C ++ +++R CP+C S + +SR
Sbjct: 240 CPVCLERMDSETTGLVTIPCQHTFHCQCLNKW--KNSR--CPVCRHSSLRLSR 288
>sp|Q6INS5|RN168_XENLA E3 ubiquitin-protein ligase RNF168 OS=Xenopus laevis GN=rnf168 PE=2
SV=1
Length = 557
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRTWKRI 210
CPIC E L + + + C HT+ C+ +++ + CCP C K V TW R+
Sbjct: 16 CPICQEILLEPV----TLPCKHTLCNPCFQMTVEKAS-LCCPFCRKRV----STWARL 64
>sp|B0BLU1|RN168_XENTR E3 ubiquitin-protein ligase RNF168 OS=Xenopus tropicalis GN=rnf168
PE=2 SV=1
Length = 535
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRTWKR 209
CPIC E L + + + C HT+ C+ +++ + CCP C K V TW R
Sbjct: 16 CPICQEILLEPV----TLPCKHTLCNPCFQMTVEKAS-LCCPFCRKRV----STWAR 63
>sp|Q9BYM8|HOIL1_HUMAN RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo
sapiens GN=RBCK1 PE=1 SV=2
Length = 510
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 145 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK--RDNRYCCPICSKSVID 202
+ N+ CP+CY L + +C HT EC I+ ++ CP +
Sbjct: 274 VLNTEPAECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNT--- 329
Query: 203 MSRTWKRIDEEIEATVMPEDYR 224
S + K ++ EI+A + PEDY+
Sbjct: 330 YSCSGKLLEREIKALLTPEDYQ 351
>sp|Q4R6Y5|ZNRF4_MACFA Zinc/RING finger protein 4 OS=Macaca fascicularis GN=ZNRF4 PE=2
SV=1
Length = 429
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 169 VMKCGHTMHCECYHEMIKRDNRYCCPICSKSV 200
++ C HT HC+C + R CP+C +SV
Sbjct: 324 ILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV 355
>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2
PE=1 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRT 206
CP+C + L D+ TT+ +C HT +C +E I D CP+C ID+ T
Sbjct: 20 CPLCDKLLRDA---TTISECLHTFCRKCIYEKITEDEIESCPVCD---IDLGGT 67
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSV 200
CPIC E L D + + CGH +C ++ K + CP+C SV
Sbjct: 16 CPICMEILQDPV----TIDCGHNFCLQCISQVGKTSEKIQCPLCKLSV 59
>sp|P39702|VPS8_YEAST Vacuolar protein sorting-associated protein 8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS8 PE=1 SV=2
Length = 1274
Score = 33.1 bits (74), Expect = 2.1, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 23/140 (16%)
Query: 61 QDVKQVICSVCDT---EQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKG-QFHCDDCGIC 116
QD+KQ++ +V +T E+ ++++ + + D+ + Y + +G H DDC IC
Sbjct: 1145 QDLKQLLLNVFNTYKLERSLSELIQKIIEDSSQ---DLVQQYRKFLSEGWSIHTDDCEIC 1201
Query: 117 RIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTM 176
G++ + G+ L L EN H I D + KC H
Sbjct: 1202 ---GKKIW------GAGLDPLL---FLAWENVQRHQDMIS----VDLKTPLVIFKCHHGF 1245
Query: 177 HCECYHEMIKRDNRYCCPIC 196
H C + ++ + Y C IC
Sbjct: 1246 HQTCLENLAQKPDEYSCLIC 1265
>sp|Q810I2|TRI50_MOUSE E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus GN=Trim50 PE=2
SV=1
Length = 483
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 15/78 (19%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-DNRYCCPICSKSV--------ID 202
CPIC E + L +++CGH+ +C + + D+ CCP+C +SV +
Sbjct: 15 QCPICLEVFKEPL----MLQCGHSYCKDCLDNLSQHLDSELCCPVCRQSVDCSSSPPNVS 70
Query: 203 MSRTWK--RIDEEIEATV 218
++R R+ +IE TV
Sbjct: 71 LARVIDALRLPGDIEPTV 88
>sp|Q9NQX1|PRDM5_HUMAN PR domain zinc finger protein 5 OS=Homo sapiens GN=PRDM5 PE=1 SV=2
Length = 630
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 34/181 (18%)
Query: 34 EIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTE-QPVAQVCTNCGVNMGE-- 90
EIFDC+ C + S N RH + + + C +C+ + + QV + ++ +
Sbjct: 318 EIFDCQECMKKFISA--NQLKRHMITHSEKRPYNCEICNKSFKRLDQVGAHKVIHSEDKP 375
Query: 91 YFCDIC--KFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLR-NNHLCIEN 147
Y C +C F ++ K + E F C+ C + + T HL I N
Sbjct: 376 YKCKLCGKGFAHRNVYKNH--------KKTHSEERPFQCEECKALFRTPFSLQRHLLIHN 427
Query: 148 SMH----HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDM 203
S HHC ++ R T+ +H + HE R +Y C +C+K+ +
Sbjct: 428 SERTFKCHHCDATFK------RKDTL-----NVHVQVVHE---RHKKYRCELCNKAFVTP 473
Query: 204 S 204
S
Sbjct: 474 S 474
>sp|Q9JIT1|RNF32_MOUSE RING finger protein 32 OS=Mus musculus GN=Rnf32 PE=2 SV=1
Length = 368
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKS 199
CPIC E L ++ C H H C K N+ CP+C K+
Sbjct: 129 CPICKEEF--ELHPQVLLSCSHVFHRACLQAFEKFTNKKTCPLCRKN 173
>sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1
SV=2
Length = 653
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-NRYCCPICSK 198
CPIC E + ++ CGHT+ +C +++ N CP CSK
Sbjct: 19 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 66
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPIC 196
CPIC FD + + KCGH+ +C H+ ++ +NR CP C
Sbjct: 138 CPIC----FDMIEEAYMTKCGHSFCYKCIHQSLEDNNR--CPKC 175
>sp|Q8CH72|TRI32_MOUSE E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus GN=Trim32 PE=1
SV=2
Length = 655
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-NRYCCPICSK 198
CPIC E + ++ CGHT+ +C +++ N CP CSK
Sbjct: 20 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 67
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPIC 196
CPIC FD + + KCGH+ +C H+ ++ +NR CP C
Sbjct: 136 CPIC----FDMIEEAYMTKCGHSFCYKCIHQSLEDNNR--CPKC 173
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 140 NNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKS 199
+N L ++ C +C ++ + CGHT +C + D+ CP+C
Sbjct: 448 SNPLGSFDASDLECSLCMRLFYEPV----TTPCGHTFCLKCLERCL--DHNAKCPLCKDV 501
Query: 200 VID--MSRTWKR--IDEEIEATVMPEDYRHKK 227
++ SR + + I EE+ AT +PE+++ +K
Sbjct: 502 LLQCLPSRKYSKNVILEELIATFLPEEFKERK 533
>sp|Q62921|HOIL1_RAT RanBP-type and C3HC4-type zinc finger-containing protein 1
OS=Rattus norvegicus GN=Rbck1 PE=1 SV=3
Length = 508
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 24/91 (26%)
Query: 145 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-----------DNRYCC 193
+ N+ CP+CY L + +C HT EC I+ DN Y C
Sbjct: 272 VLNTEPAECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSC 330
Query: 194 PICSKSVIDMSRTWKRIDEEIEATVMPEDYR 224
P K ++ EI A + PEDY+
Sbjct: 331 P------------GKLLEREIRALLSPEDYQ 349
>sp|Q9WUB0|HOIL1_MOUSE RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Mus
musculus GN=Rbck1 PE=1 SV=2
Length = 508
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 145 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK--RDNRYCCPICSKSVID 202
+ N+ CP+CY L + +C HT EC I+ ++ CP +
Sbjct: 272 VLNTEPTECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVACPFIDST--- 327
Query: 203 MSRTWKRIDEEIEATVMPEDYR 224
S K ++ EI A + PEDY+
Sbjct: 328 YSCPGKLLEREIRALLSPEDYQ 349
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 161 FDSLRNTTVMKCGHTMHCECYHEMIK-RDNRYCCPICSKSV 200
D+ ++ + CGH C H+ ++ R NR CP+C +
Sbjct: 43 LDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGI 83
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 161 FDSLRNTTVMKCGHTMHCECYHEMIK-RDNRYCCPICSKSV 200
D+ ++ + CGH C H+ ++ R NR CP+C +
Sbjct: 43 LDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGI 83
>sp|Q9CXE0|PRDM5_MOUSE PR domain zinc finger protein 5 OS=Mus musculus GN=Prdm5 PE=2 SV=2
Length = 599
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 34/182 (18%)
Query: 33 NEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTE-QPVAQVCTNCGVNMGE- 90
+EIFDC+ C + S N RH + + + C +C+ + + QV + ++ +
Sbjct: 286 HEIFDCQECMKKFISA--NQLKRHMITHSEKRPYNCEICNKSFKRLDQVGAHKVIHSEDK 343
Query: 91 -YFCDIC--KFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLR-NNHLCIE 146
Y C +C F ++ K + E F C C + + T HL I
Sbjct: 344 PYQCKLCGKGFAHRNVYKNH--------KKTHSEERPFQCDACKALFRTPFSLQRHLLIH 395
Query: 147 NSMH----HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202
NS HHC ++ R T+ +H + HE R +Y C +C+K+ +
Sbjct: 396 NSERTFKCHHCDATFK------RKDTL-----NVHVQVVHE---RHKKYRCELCNKAFVT 441
Query: 203 MS 204
S
Sbjct: 442 PS 443
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 161 FDSLRNTTVMKCGHTMHCECYHEMIK-RDNRYCCPICSKSV 200
D+ ++ + CGH C H+ ++ R NR CP+C +
Sbjct: 43 LDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGI 83
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPIC 196
C IC ++ FD R+ + CGHT H +C + + CP C
Sbjct: 7 CTICSDF-FDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQC 49
>sp|Q8VIG6|TRAIP_MOUSE TRAF-interacting protein OS=Mus musculus GN=Traip PE=1 SV=2
Length = 470
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPIC 196
C IC ++ FD R+ + CGHT H +C + + CP C
Sbjct: 7 CTICSDF-FDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQC 49
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 161 FDSLRNTTVMKCGHTMHCECYHEMIK-RDNRYCCPICSKSV 200
D+ ++ + CGH C H+ ++ R NR CP+C +
Sbjct: 45 LDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGI 85
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 161 FDSLRNTTVMKCGHTMHCECYHEMIK-RDNRYCCPICSKSV 200
D+ ++ + CGH C H+ ++ R NR CP+C +
Sbjct: 43 LDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGI 83
>sp|P18750|ZO61_XENLA Oocyte zinc finger protein XlCOF6.1 (Fragment) OS=Xenopus laevis
PE=3 SV=1
Length = 224
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 58 LVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGIC- 116
R+ V + + E+P + C+ CG + CD+ + Y + F C +CG C
Sbjct: 99 FARRSVLEAHQKIHTGERPFS--CSECGKGFIKQ-CDLARHYRTHTGEKPFPCPECGKCF 155
Query: 117 ----------RIGGRENYFHCKRCGSCYSTSLRNNHL 143
R E F C CG C++ +N+HL
Sbjct: 156 TQSMQLIRHRRTHTGEKPFACSECGKCFA---QNSHL 189
>sp|P36078|HOT13_YEAST Helper of Tim protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HOT13 PE=1 SV=1
Length = 116
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 27 IRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQ-VICSVCDTEQPVAQ------ 79
IR CC++ + C CH E +S +P ++++L+ K +IC VC E A+
Sbjct: 29 IRFKCCDKYYACFECHQELSS---HPLEKYDLLDDANKHLIICGVCRHEMTFAEYYDYNS 85
Query: 80 --VCTNC 84
+C NC
Sbjct: 86 NLICPNC 92
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRTWKRI 210
CP+C E D + ++ CGH C ++ + + + CP C +S+ D T R+
Sbjct: 146 CPLCVELFKDPV----MVACGHNFCRSCIDKVWEGQSSFACPECKESITDRKYTINRV 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.493
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,964,470
Number of Sequences: 539616
Number of extensions: 4264232
Number of successful extensions: 17698
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 302
Number of HSP's that attempted gapping in prelim test: 17284
Number of HSP's gapped (non-prelim): 643
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)