Query 024406
Match_columns 268
No_of_seqs 222 out of 681
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:42:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 1.9E-56 6.4E-61 374.4 11.2 139 3-151 4-142 (143)
2 2k2d_A Ring finger and CHY zin 100.0 3.9E-32 1.3E-36 207.2 2.8 75 193-267 1-75 (79)
3 2ecm_A Ring finger and CHY zin 99.4 6.6E-14 2.2E-18 96.4 3.4 52 148-201 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.3 5.6E-13 1.9E-17 97.3 3.2 56 146-204 11-66 (74)
5 2ecl_A Ring-box protein 2; RNF 99.3 1.1E-12 3.8E-17 98.5 4.5 49 150-201 26-75 (81)
6 2kiz_A E3 ubiquitin-protein li 99.3 1.1E-12 3.7E-17 94.6 4.2 53 146-201 10-62 (69)
7 1iym_A EL5; ring-H2 finger, ub 99.3 6.2E-13 2.1E-17 91.6 2.7 49 150-201 5-54 (55)
8 1x4j_A Ring finger protein 38; 99.3 5.3E-13 1.8E-17 98.0 2.3 53 148-203 21-73 (75)
9 2ect_A Ring finger protein 126 99.2 2.9E-12 1E-16 94.4 3.0 52 148-202 13-64 (78)
10 2l0b_A E3 ubiquitin-protein li 99.2 2.6E-12 9E-17 98.2 2.7 51 148-201 38-88 (91)
11 1v87_A Deltex protein 2; ring- 99.2 3.4E-12 1.2E-16 100.4 3.4 57 147-203 22-95 (114)
12 3ng2_A RNF4, snurf, ring finge 99.2 4.4E-12 1.5E-16 91.3 3.1 53 148-202 8-63 (71)
13 2ea6_A Ring finger protein 4; 99.2 5.4E-12 1.8E-16 90.1 3.4 52 148-201 13-67 (69)
14 2xeu_A Ring finger protein 4; 99.2 7.5E-12 2.6E-16 88.0 3.4 51 150-202 3-56 (64)
15 1g25_A CDK-activating kinase a 99.1 2.5E-11 8.6E-16 86.6 4.5 51 150-201 3-54 (65)
16 1chc_A Equine herpes virus-1 r 99.1 1.5E-11 5.2E-16 88.1 2.8 50 149-203 4-53 (68)
17 1e4u_A Transcriptional repress 99.1 8.2E-12 2.8E-16 94.0 -1.3 60 149-211 10-71 (78)
18 3dpl_R Ring-box protein 1; ubi 99.1 6.5E-11 2.2E-15 94.0 3.8 49 150-200 48-99 (106)
19 2ct2_A Tripartite motif protei 99.1 7.6E-11 2.6E-15 88.0 3.9 53 149-201 14-67 (88)
20 2ecn_A Ring finger protein 141 99.0 8.7E-12 3E-16 90.0 -2.0 52 148-206 13-64 (70)
21 2djb_A Polycomb group ring fin 99.0 8.1E-11 2.8E-15 85.7 2.9 49 149-202 14-62 (72)
22 2d8t_A Dactylidin, ring finger 99.0 5.8E-11 2E-15 86.3 1.7 49 148-202 13-61 (71)
23 4ap4_A E3 ubiquitin ligase RNF 99.0 1.3E-10 4.3E-15 92.2 2.9 53 148-202 5-60 (133)
24 2csy_A Zinc finger protein 183 99.0 1.3E-10 4.5E-15 86.2 2.7 48 148-201 13-60 (81)
25 2d8s_A Cellular modulator of i 99.0 1.9E-10 6.5E-15 87.0 3.1 53 147-201 12-69 (80)
26 2yur_A Retinoblastoma-binding 98.9 3E-10 1E-14 83.3 2.7 52 149-204 14-66 (74)
27 2ecy_A TNF receptor-associated 98.9 3.9E-10 1.3E-14 80.6 3.0 49 149-202 14-62 (66)
28 1t1h_A Gspef-atpub14, armadill 98.9 1.2E-09 4E-14 80.3 5.1 49 148-201 6-54 (78)
29 2ysl_A Tripartite motif-contai 98.9 4.3E-10 1.5E-14 81.4 2.4 50 148-201 18-68 (73)
30 4a0k_B E3 ubiquitin-protein li 98.9 2.2E-10 7.5E-15 92.7 0.5 50 149-200 47-110 (117)
31 3lrq_A E3 ubiquitin-protein li 98.9 4.5E-10 1.5E-14 87.1 2.2 48 150-201 22-69 (100)
32 4ayc_A E3 ubiquitin-protein li 98.9 4.6E-10 1.6E-14 91.7 2.3 68 151-226 54-124 (138)
33 3ztg_A E3 ubiquitin-protein li 98.9 4.4E-10 1.5E-14 85.0 1.8 49 149-201 12-61 (92)
34 2ysj_A Tripartite motif-contai 98.9 1.5E-09 5E-14 76.7 3.9 45 148-196 18-63 (63)
35 4ap4_A E3 ubiquitin ligase RNF 98.9 1.4E-09 4.8E-14 86.1 4.2 53 148-202 70-125 (133)
36 2ecw_A Tripartite motif-contai 98.8 2E-09 6.9E-14 79.2 4.2 49 149-201 18-70 (85)
37 2y43_A E3 ubiquitin-protein li 98.8 7.8E-10 2.7E-14 85.0 1.9 48 150-202 22-69 (99)
38 2ecv_A Tripartite motif-contai 98.8 1.7E-09 5.8E-14 79.6 3.4 50 148-201 17-70 (85)
39 2ckl_A Polycomb group ring fin 98.8 1E-09 3.5E-14 85.8 2.3 49 149-202 14-62 (108)
40 1rmd_A RAG1; V(D)J recombinati 98.8 1.4E-09 4.8E-14 85.9 2.2 62 150-216 23-86 (116)
41 2ecj_A Tripartite motif-contai 98.8 2E-09 6.9E-14 74.3 2.7 44 149-196 14-58 (58)
42 3fl2_A E3 ubiquitin-protein li 98.8 2.4E-09 8.2E-14 85.6 3.1 48 150-202 52-99 (124)
43 2egp_A Tripartite motif-contai 98.8 6.4E-10 2.2E-14 81.5 -0.6 49 149-201 11-64 (79)
44 2ckl_B Ubiquitin ligase protei 98.8 2.7E-09 9.2E-14 89.2 2.8 49 150-202 54-102 (165)
45 3hct_A TNF receptor-associated 98.7 2.3E-09 8E-14 85.2 2.1 74 150-239 18-94 (118)
46 1z6u_A NP95-like ring finger p 98.7 3.9E-09 1.3E-13 88.0 1.9 48 150-202 78-125 (150)
47 3l11_A E3 ubiquitin-protein li 98.7 2.5E-09 8.6E-14 84.2 -0.1 48 150-202 15-62 (115)
48 1jm7_A BRCA1, breast cancer ty 98.6 9.1E-09 3.1E-13 80.0 2.8 48 150-201 21-69 (112)
49 2vje_A E3 ubiquitin-protein li 98.5 2.3E-08 8E-13 71.8 1.5 50 147-202 5-57 (64)
50 2vje_B MDM4 protein; proto-onc 98.5 2.7E-08 9.2E-13 71.3 1.0 50 148-203 5-57 (63)
51 2ct0_A Non-SMC element 1 homol 98.4 6.8E-08 2.3E-12 72.2 2.2 49 150-201 15-63 (74)
52 1bor_A Transcription factor PM 98.4 2.7E-08 9.4E-13 69.4 0.0 45 148-201 4-48 (56)
53 3hcs_A TNF receptor-associated 98.4 5.7E-08 2E-12 81.4 1.6 63 150-217 18-81 (170)
54 3knv_A TNF receptor-associated 98.4 2.7E-08 9.4E-13 82.1 -0.8 47 149-200 30-76 (141)
55 1jm7_B BARD1, BRCA1-associated 98.3 5.4E-08 1.9E-12 77.1 0.0 45 150-201 22-66 (117)
56 4ic3_A E3 ubiquitin-protein li 98.3 5.8E-08 2E-12 71.3 0.2 43 150-202 24-67 (74)
57 1vyx_A ORF K3, K3RING; zinc-bi 98.3 2.1E-07 7.3E-12 66.5 3.0 52 146-201 2-58 (60)
58 2y1n_A E3 ubiquitin-protein li 98.3 2.5E-07 8.5E-12 88.4 4.1 49 149-202 331-379 (389)
59 2kr4_A Ubiquitin conjugation f 98.3 3.2E-07 1.1E-11 69.3 3.1 47 149-201 13-59 (85)
60 1wim_A KIAA0161 protein; ring 98.2 4.9E-07 1.7E-11 68.9 2.8 50 149-199 4-61 (94)
61 2c2l_A CHIP, carboxy terminus 98.2 9.8E-07 3.4E-11 77.7 4.4 51 146-201 204-254 (281)
62 2kre_A Ubiquitin conjugation f 98.2 4.9E-07 1.7E-11 70.6 2.1 47 149-201 28-74 (100)
63 2ea5_A Cell growth regulator w 98.2 6.1E-07 2.1E-11 65.3 2.0 47 147-203 12-59 (68)
64 1wgm_A Ubiquitin conjugation f 98.2 7.1E-07 2.4E-11 69.4 2.5 47 149-201 21-68 (98)
65 2ecg_A Baculoviral IAP repeat- 98.1 5E-07 1.7E-11 66.3 1.0 43 150-202 25-68 (75)
66 2yu4_A E3 SUMO-protein ligase 98.1 1.9E-06 6.4E-11 66.1 3.5 48 149-199 6-59 (94)
67 3k1l_B Fancl; UBC, ring, RWD, 98.0 9.1E-07 3.1E-11 83.6 1.3 54 148-201 306-372 (381)
68 2yho_A E3 ubiquitin-protein li 97.9 1.2E-06 4.2E-11 65.4 -0.5 45 150-204 18-63 (79)
69 2f42_A STIP1 homology and U-bo 97.8 1.4E-05 4.8E-10 68.9 5.0 48 149-201 105-152 (179)
70 3htk_C E3 SUMO-protein ligase 97.8 4E-06 1.4E-10 76.4 1.4 51 148-201 179-231 (267)
71 3t6p_A Baculoviral IAP repeat- 97.5 2.1E-05 7.3E-10 73.8 0.7 43 150-202 295-338 (345)
72 2bay_A PRE-mRNA splicing facto 97.3 6.9E-05 2.4E-09 53.4 1.8 48 149-201 2-49 (61)
73 3vk6_A E3 ubiquitin-protein li 96.8 0.00049 1.7E-08 54.2 2.5 49 152-204 3-51 (101)
74 3nw0_A Non-structural maintena 95.7 0.0041 1.4E-07 55.4 2.5 48 150-200 180-227 (238)
75 2jrp_A Putative cytoplasmic pr 91.1 0.061 2.1E-06 40.7 1.0 28 67-99 33-60 (81)
76 2ko5_A Ring finger protein Z; 90.0 0.072 2.5E-06 41.5 0.6 44 150-201 28-72 (99)
77 3a43_A HYPD, hydrogenase nicke 89.9 0.11 3.8E-06 42.5 1.6 40 225-264 66-124 (139)
78 2jun_A Midline-1; B-BOX, TRIM, 88.9 0.18 6E-06 38.0 2.0 34 149-184 2-36 (101)
79 2kdx_A HYPA, hydrogenase/ureas 83.8 0.33 1.1E-05 38.2 1.2 38 225-264 69-107 (119)
80 2lbm_A Transcriptional regulat 74.0 2.1 7.2E-05 35.2 3.1 51 145-200 58-118 (142)
81 2jne_A Hypothetical protein YF 73.4 2 6.7E-05 33.6 2.6 9 89-97 80-88 (101)
82 3v43_A Histone acetyltransfera 71.3 0.54 1.9E-05 36.7 -1.1 76 119-198 21-111 (112)
83 2ysm_A Myeloid/lymphoid or mix 68.7 4.8 0.00016 30.9 3.9 69 64-136 6-81 (111)
84 4bbq_A Lysine-specific demethy 62.3 1.1 3.7E-05 34.8 -1.0 48 150-198 59-113 (117)
85 2kwj_A Zinc finger protein DPF 57.5 0.49 1.7E-05 37.1 -3.8 86 112-202 3-111 (114)
86 2ysm_A Myeloid/lymphoid or mix 55.1 6.6 0.00023 30.0 2.4 80 112-198 9-103 (111)
87 2dkt_A Ring finger and CHY zin 53.4 4.4 0.00015 33.5 1.2 30 90-119 98-127 (143)
88 1zfo_A LAsp-1; LIM domain, zin 52.9 2.9 0.0001 25.3 0.0 30 149-181 2-31 (31)
89 1weo_A Cellulose synthase, cat 50.3 13 0.00044 28.5 3.3 56 145-201 11-69 (93)
90 2egq_A FHL1 protein; LIM domai 49.8 4.4 0.00015 28.4 0.6 42 149-202 14-58 (77)
91 3uk3_C Zinc finger protein 217 49.7 14 0.00049 23.1 3.1 16 190-205 4-19 (57)
92 1g47_A Pinch protein; LIM doma 48.8 6.3 0.00022 27.5 1.3 43 148-202 9-51 (77)
93 2jrp_A Putative cytoplasmic pr 48.2 8.7 0.0003 28.8 2.0 26 65-90 18-43 (81)
94 1x61_A Thyroid receptor intera 47.8 6.7 0.00023 27.0 1.3 40 150-201 5-44 (72)
95 1bbo_A Human enhancer-binding 44.9 11 0.00039 23.6 2.0 15 191-205 2-16 (57)
96 1x63_A Skeletal muscle LIM-pro 43.7 6 0.00021 28.0 0.5 41 150-202 15-55 (82)
97 1b8t_A Protein (CRP1); LIM dom 42.2 2.3 7.8E-05 35.6 -2.3 67 151-254 116-182 (192)
98 3j20_Y 30S ribosomal protein S 42.0 11 0.00037 25.5 1.6 9 78-86 19-27 (50)
99 3mjh_B Early endosome antigen 41.2 13 0.00046 23.3 1.8 13 191-203 6-18 (34)
100 2k4x_A 30S ribosomal protein S 40.9 17 0.00058 25.0 2.5 9 78-86 18-26 (55)
101 3i2d_A E3 SUMO-protein ligase 40.8 16 0.00054 34.5 3.0 50 149-201 248-299 (371)
102 1x4l_A Skeletal muscle LIM-pro 40.5 11 0.00039 25.8 1.5 41 150-202 5-47 (72)
103 3lqh_A Histone-lysine N-methyl 40.4 11 0.00037 32.1 1.6 52 150-202 2-66 (183)
104 1wil_A KIAA1045 protein; ring 40.3 19 0.00064 27.4 2.7 32 148-184 13-47 (89)
105 1iml_A CRIP, cysteine rich int 40.0 5.3 0.00018 28.0 -0.3 38 152-202 2-39 (76)
106 4fo9_A E3 SUMO-protein ligase 39.4 17 0.00058 34.2 3.0 49 150-201 215-265 (360)
107 1wyh_A SLIM 2, skeletal muscle 38.7 7.4 0.00025 26.7 0.3 41 150-202 5-45 (72)
108 2kmk_A Zinc finger protein GFI 37.8 22 0.00074 23.8 2.6 17 190-206 29-45 (82)
109 2lri_C Autoimmune regulator; Z 37.7 14 0.00048 26.1 1.7 47 148-199 10-59 (66)
110 1x6a_A LIMK-2, LIM domain kina 36.9 11 0.00036 26.6 0.9 39 150-202 15-53 (81)
111 1znf_A 31ST zinc finger from X 36.8 18 0.0006 18.7 1.7 15 191-205 2-16 (27)
112 2ehe_A Four and A half LIM dom 36.6 12 0.00039 26.5 1.1 41 150-202 15-55 (82)
113 1vq8_Z 50S ribosomal protein L 36.1 12 0.00043 27.9 1.2 34 76-120 25-58 (83)
114 2m0e_A Zinc finger and BTB dom 35.7 21 0.00071 18.4 1.9 16 190-205 2-17 (29)
115 1klr_A Zinc finger Y-chromosom 35.5 19 0.00066 18.8 1.7 16 190-205 2-17 (30)
116 4ayb_P DNA-directed RNA polyme 35.1 18 0.00061 24.5 1.7 8 79-86 24-31 (48)
117 2cu8_A Cysteine-rich protein 2 34.9 9.2 0.00032 26.7 0.3 41 149-202 8-48 (76)
118 1ard_A Yeast transcription fac 34.7 22 0.00076 18.5 1.9 16 190-205 2-17 (29)
119 2adr_A ADR1; transcription reg 34.2 18 0.00062 22.9 1.7 15 191-205 3-17 (60)
120 2jvx_A NF-kappa-B essential mo 34.1 13 0.00045 22.4 0.8 16 190-205 3-18 (28)
121 2co8_A NEDD9 interacting prote 34.0 11 0.00037 27.0 0.6 43 148-203 13-55 (82)
122 2dj7_A Actin-binding LIM prote 33.7 15 0.0005 26.3 1.2 41 149-202 14-54 (80)
123 2kvf_A Zinc finger and BTB dom 33.4 16 0.00055 19.1 1.1 16 190-205 3-18 (28)
124 1vq8_1 50S ribosomal protein L 33.2 15 0.00051 25.8 1.1 28 224-254 12-39 (57)
125 1x4k_A Skeletal muscle LIM-pro 33.2 12 0.00041 25.6 0.7 41 150-202 5-45 (72)
126 1p7a_A BF3, BKLF, kruppel-like 33.0 24 0.00082 19.9 1.9 16 190-205 11-26 (37)
127 1x68_A FHL5 protein; four-and- 32.8 15 0.00051 25.6 1.1 68 150-253 5-74 (76)
128 2cup_A Skeletal muscle LIM-pro 32.5 11 0.00038 27.6 0.4 40 150-201 5-44 (101)
129 1x4s_A Protein FON, zinc finge 32.4 17 0.00059 25.6 1.4 24 64-87 10-35 (59)
130 1qxf_A GR2, 30S ribosomal prot 32.2 17 0.00057 26.3 1.3 35 65-99 7-47 (66)
131 2ayj_A 50S ribosomal protein L 31.9 28 0.00095 24.3 2.3 26 62-87 16-42 (56)
132 2lce_A B-cell lymphoma 6 prote 31.7 27 0.00094 23.2 2.4 15 190-204 17-31 (74)
133 3iz5_l 60S ribosomal protein L 31.5 17 0.00058 27.9 1.3 31 224-257 11-48 (94)
134 2kvg_A Zinc finger and BTB dom 31.1 16 0.00054 19.3 0.8 16 190-205 3-18 (27)
135 2elr_A Zinc finger protein 406 30.9 27 0.00092 19.4 1.9 16 190-205 9-24 (36)
136 2kvh_A Zinc finger and BTB dom 30.8 20 0.00067 18.7 1.2 16 190-205 3-18 (27)
137 2fiy_A Protein FDHE homolog; F 30.5 17 0.00058 33.3 1.4 24 229-256 208-231 (309)
138 4a18_A RPL37, ribosomal protei 30.1 17 0.00057 28.0 1.0 30 225-257 12-48 (94)
139 4gzn_C ZFP-57, zinc finger pro 30.1 37 0.0013 22.9 2.8 15 191-205 5-19 (60)
140 2cor_A Pinch protein; LIM doma 30.0 18 0.00061 25.6 1.2 41 148-202 13-53 (79)
141 2gmg_A Hypothetical protein PF 30.0 21 0.00071 28.0 1.6 33 227-260 65-97 (105)
142 3shb_A E3 ubiquitin-protein li 29.9 60 0.0021 23.5 4.0 13 122-134 39-51 (77)
143 1paa_A Yeast transcription fac 29.5 24 0.00084 18.5 1.5 16 190-205 2-17 (30)
144 1rim_A E6APC2 peptide; E6-bind 29.5 28 0.00096 19.4 1.8 17 190-206 2-18 (33)
145 1x5w_A Zinc finger protein 64, 29.2 23 0.0008 23.3 1.6 31 190-220 37-67 (70)
146 3u5c_f 40S ribosomal protein S 29.1 25 0.00086 28.7 2.1 22 77-98 117-146 (152)
147 1rik_A E6APC1 peptide; E6-bind 29.0 20 0.0007 18.7 1.1 15 191-205 3-17 (29)
148 3ql9_A Transcriptional regulat 29.0 40 0.0014 27.1 3.2 52 145-201 52-113 (129)
149 1llm_C Chimera of ZIF23-GCN4; 28.8 34 0.0012 23.6 2.5 13 191-203 32-44 (88)
150 1x3h_A Leupaxin; paxillin fami 28.7 17 0.0006 25.3 0.9 39 150-202 15-53 (80)
151 2m0f_A Zinc finger and BTB dom 28.6 23 0.00079 18.3 1.2 16 190-205 2-17 (29)
152 2fiy_A Protein FDHE homolog; F 28.6 40 0.0014 30.8 3.5 25 63-87 206-231 (309)
153 1ryq_A DNA-directed RNA polyme 28.4 31 0.001 25.0 2.1 25 62-87 8-32 (69)
154 2k16_A Transcription initiatio 28.3 7.2 0.00025 27.8 -1.2 50 150-201 18-70 (75)
155 1x6e_A Zinc finger protein 24; 28.1 21 0.00073 23.8 1.2 14 190-203 14-27 (72)
156 2m0d_A Zinc finger and BTB dom 28.1 24 0.0008 18.4 1.2 16 190-205 3-18 (30)
157 3u5c_b RP61, YS20, 40S ribosom 27.7 33 0.0011 25.7 2.3 36 64-99 33-74 (82)
158 2d9h_A Zinc finger protein 692 27.4 55 0.0019 21.8 3.3 15 191-205 8-22 (78)
159 3j20_W 30S ribosomal protein S 27.4 24 0.00081 25.2 1.4 35 64-98 14-54 (63)
160 1vd4_A Transcription initiatio 27.3 37 0.0013 22.2 2.3 10 80-89 16-25 (62)
161 3f6q_B LIM and senescent cell 27.3 16 0.00055 24.7 0.5 44 148-203 9-52 (72)
162 2lvu_A Zinc finger and BTB dom 32.8 14 0.00046 19.2 0.0 14 191-204 3-16 (26)
163 4gut_A Lysine-specific histone 26.7 86 0.0029 31.8 5.9 81 141-237 4-103 (776)
164 2l3k_A Rhombotin-2, linker, LI 26.6 19 0.00066 27.6 0.9 39 151-201 9-47 (123)
165 2cs3_A Protein C14ORF4, MY039 26.3 21 0.00072 27.0 1.0 61 148-217 13-86 (93)
166 2ct1_A Transcriptional repress 26.1 34 0.0012 22.9 2.1 13 191-203 16-28 (77)
167 3lpe_B DNA-directed RNA polyme 25.9 26 0.00088 24.6 1.3 19 67-86 3-21 (59)
168 2cur_A Skeletal muscle LIM-pro 25.8 24 0.00083 23.9 1.2 38 150-201 5-42 (69)
169 2elx_A Zinc finger protein 406 25.7 26 0.00089 19.3 1.2 16 190-205 7-22 (35)
170 2cuq_A Four and A half LIM dom 25.2 30 0.001 24.1 1.6 38 150-201 15-52 (80)
171 2d8x_A Protein pinch; LIM doma 25.1 20 0.00069 24.4 0.7 40 150-203 5-44 (70)
172 2emz_A ZFP-95, zinc finger pro 25.0 61 0.0021 19.2 2.9 17 190-206 12-28 (46)
173 2els_A Zinc finger protein 406 24.8 29 0.00098 19.4 1.2 16 190-205 9-24 (36)
174 2yt5_A Metal-response element- 24.7 42 0.0014 23.0 2.3 10 150-159 52-61 (66)
175 3v2d_5 50S ribosomal protein L 24.2 27 0.00091 24.5 1.1 30 228-262 29-58 (60)
176 2lvt_A Zinc finger and BTB dom 30.0 16 0.00055 19.3 0.0 14 191-204 3-16 (29)
177 1f62_A Transcription factor WS 24.2 21 0.00074 23.3 0.6 46 152-199 2-50 (51)
178 6rxn_A Rubredoxin; electron tr 24.0 35 0.0012 22.7 1.6 13 88-100 2-15 (46)
179 1twf_L ABC10-alpha, DNA-direct 23.9 34 0.0012 24.7 1.7 7 109-115 47-53 (70)
180 2yte_A Zinc finger protein 473 23.8 41 0.0014 19.4 1.9 16 190-205 10-25 (42)
181 2elv_A Zinc finger protein 406 23.8 30 0.001 19.4 1.2 16 190-205 9-24 (36)
182 2puy_A PHD finger protein 21A; 23.6 99 0.0034 20.8 4.0 22 111-134 6-27 (60)
183 1a1h_A QGSR zinc finger peptid 23.5 49 0.0017 22.4 2.5 15 190-204 34-48 (90)
184 2lvr_A Zinc finger and BTB dom 29.2 17 0.00058 19.2 0.0 15 191-205 4-18 (30)
185 1v6g_A Actin binding LIM prote 23.3 24 0.00084 24.7 0.8 39 150-202 15-53 (81)
186 3gox_A Restriction endonucleas 23.3 67 0.0023 27.8 3.7 73 117-201 68-148 (200)
187 2elt_A Zinc finger protein 406 23.1 32 0.0011 19.1 1.2 15 190-204 9-23 (36)
188 1ptq_A Protein kinase C delta 23.1 47 0.0016 21.2 2.2 11 104-114 25-35 (50)
189 2xzm_6 RPS27E; ribosome, trans 22.9 31 0.0011 25.8 1.4 36 64-99 31-72 (81)
190 3iz6_X 40S ribosomal protein S 22.8 40 0.0014 25.4 2.0 35 65-99 36-76 (86)
191 2v3b_B Rubredoxin 2, rubredoxi 22.6 44 0.0015 22.8 2.0 12 88-99 1-12 (55)
192 2ytb_A Zinc finger protein 32; 22.6 34 0.0012 19.8 1.3 16 190-205 11-26 (42)
193 2elq_A Zinc finger protein 406 22.6 32 0.0011 19.2 1.2 16 190-205 9-24 (36)
194 2ytm_A Zinc finger protein 28 22.4 53 0.0018 19.6 2.2 17 190-206 12-28 (46)
195 1x62_A C-terminal LIM domain p 22.3 36 0.0012 23.8 1.6 40 149-202 14-53 (79)
196 1tf6_A Protein (transcription 22.2 1.1E+02 0.0038 24.0 4.7 15 191-205 135-151 (190)
197 3a7q_B Low-density lipoprotein 22.2 66 0.0022 20.5 2.7 32 122-154 10-43 (44)
198 2kfq_A FP1; protein, de novo p 22.1 28 0.00097 19.2 0.8 14 190-203 2-15 (32)
199 2zkr_2 60S ribosomal protein L 21.8 31 0.0011 26.6 1.2 31 225-258 12-49 (97)
200 2en7_A Zinc finger protein 268 21.7 48 0.0016 19.3 1.9 16 190-205 12-27 (44)
201 2epx_A Zinc finger protein 28 21.6 47 0.0016 19.7 1.9 16 190-205 12-27 (47)
202 1srk_A Zinc finger protein ZFP 21.3 36 0.0012 18.8 1.2 16 190-205 7-22 (35)
203 2eos_A B-cell lymphoma 6 prote 21.2 42 0.0014 19.5 1.5 16 190-205 11-26 (42)
204 2eoq_A Zinc finger protein 224 21.1 48 0.0016 19.7 1.8 16 190-205 12-27 (46)
205 1ajj_A LR5, low-density lipopr 20.9 53 0.0018 20.2 1.9 31 123-154 5-37 (37)
206 1njq_A Superman protein; zinc- 20.7 38 0.0013 19.4 1.2 16 190-205 6-21 (39)
207 2enf_A Zinc finger protein 347 20.7 49 0.0017 19.6 1.8 16 190-205 12-27 (46)
208 2emk_A Zinc finger protein 28 20.7 49 0.0017 19.7 1.8 17 190-206 12-28 (46)
209 2ytr_A Zinc finger protein 347 20.6 51 0.0018 19.4 1.9 16 190-205 12-27 (46)
210 2iyb_E Testin, TESS, TES; LIM 20.6 21 0.00073 24.1 0.0 38 152-201 4-43 (65)
211 2elo_A Zinc finger protein 406 20.5 37 0.0013 19.0 1.1 16 190-205 9-24 (37)
212 2eop_A Zinc finger protein 268 20.5 52 0.0018 19.4 1.9 16 190-205 12-27 (46)
213 2emg_A Zinc finger protein 484 20.5 52 0.0018 19.5 1.9 16 190-205 12-27 (46)
214 2yti_A Zinc finger protein 347 20.3 50 0.0017 19.6 1.8 16 190-205 12-27 (46)
215 2eq2_A Zinc finger protein 347 20.1 50 0.0017 19.6 1.7 16 190-205 12-27 (46)
216 1v5n_A PDI-like hypothetical p 20.1 48 0.0016 24.6 1.9 10 123-132 60-69 (89)
217 2eon_A ZFP-95, zinc finger pro 20.1 44 0.0015 19.9 1.5 16 190-205 12-27 (46)
218 2l5u_A Chromodomain-helicase-D 20.1 27 0.00093 24.0 0.5 48 147-199 8-58 (61)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=1.9e-56 Score=374.40 Aligned_cols=139 Identities=42% Similarity=1.057 Sum_probs=132.2
Q ss_pred CCccccccCCCCccCccccccCcceEcCCCCCcccCcchHHhhhcCCCCCCCCccccccccceeecCCCCccccccccCC
Q 024406 3 GSANERITFGKMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCT 82 (268)
Q Consensus 3 ~~~~~~~~~~~~~~gC~HY~r~c~l~~pcC~~~y~Cr~CHde~~~~~~~~~~~H~~~r~~~~~v~C~~C~~~q~v~~~C~ 82 (268)
++....+|++++++||+||+|+|+|+||||++|||||+||||+ ++|+++|+++++|+||+|+++|++++.|+
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~--------~dH~l~r~~~~~vlCg~C~~~q~~~~~C~ 75 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTN--------EDHQLDRFKVKEVQCINCEKLQHAQQTCE 75 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHT--------SSSCCCSSSCCCEEESSSCCEECSCSBCS
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhccc--------cccccchhccceeeecccCccccccCcCC
Confidence 4555678999999999999999999999999999999999997 47999999999999999999999999999
Q ss_pred cCCCccceeeccccccccCCCCcCeeecCCCCcccccCccceeecCccCccccccccCcceeecCCCCC
Q 024406 83 NCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHH 151 (268)
Q Consensus 83 ~Cg~~f~~y~C~~C~l~d~~~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~~ 151 (268)
+||+.||+|||+|||||| ++|+||||++|||||||+++|||||++||+|||++|+++|+|+|+++++
T Consensus 76 ~Cg~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 76 DCSTLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SSCCBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred CCCccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 999999999999999997 4699999999999999999999999999999999999999999999865
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.97 E-value=3.9e-32 Score=207.17 Aligned_cols=75 Identities=41% Similarity=0.810 Sum_probs=40.5
Q ss_pred CCCCCcchhhhhHHHHHHHHHHHhcCCChhhhcCeeEEEccCCCCccccceeEeeecCCCCCCccccccCCCCCC
Q 024406 193 CPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPVLP 267 (268)
Q Consensus 193 CPiCrksi~~m~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~SyNT~~~~~~~~~ 267 (268)
||+|+||+.||+.+|++||++|+++|||++|++++|+|+||||+++|+++||||||||+.|+||||++++++..|
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~~~~ 75 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGRRIS 75 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCCCCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999875544
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.42 E-value=6.6e-14 Score=96.44 Aligned_cols=52 Identities=42% Similarity=0.883 Sum_probs=46.1
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
+.+..||||++.+.++...+++|+|||.||..|+.+|++.. .+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 45788999999987776778899999999999999999987 89999998763
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=5.6e-13 Score=97.30 Aligned_cols=56 Identities=23% Similarity=0.676 Sum_probs=47.1
Q ss_pred cCCCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhhh
Q 024406 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMS 204 (268)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~ 204 (268)
+...+..||||++.+ .....+.+|+|||.||..|+.+|++.. .+||+||+.+..+.
T Consensus 11 ~~~~~~~C~IC~~~~-~~~~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDF-KPRDELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBC-CSSSCEEEETTTEEEEHHHHHHHHHHC--SBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCccc-CCCCcEEEcCCCCEecHHHHHHHHHcC--CcCCCcCccccccc
Confidence 445678999999984 444677889999999999999999886 79999999997643
No 5
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=98.53 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=40.0
Q ss_pred CCCCchhhhhhcccCCcceEe-ccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~L-pCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
+..||||++++..+ +.+++| +|||.||..|+++|++.+ .+||+||+.+.
T Consensus 26 ~~~C~iC~~~~~~~-~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAENKQE-DCVVVWGECNHSFHNCCMSLWVKQN--NRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHHTCTT-TCCEEEETTSCEEEHHHHHHHTTTC--CBCTTTCCBCC
T ss_pred hccCcccccccCCC-ceEEEeCCCCCccChHHHHHHHHhC--CCCCCcCCCcc
Confidence 56799999986554 444454 599999999999999886 79999999875
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=94.55 Aligned_cols=53 Identities=25% Similarity=0.607 Sum_probs=44.9
Q ss_pred cCCCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
+......||||++.+ .....++.|+|||.||..|+.+|++.+ .+||+||+.+.
T Consensus 10 ~~~~~~~C~IC~~~~-~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSIL-EEGEDVRRLPCMHLFHQVCVDQWLITN--KKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCC-CSSSCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccc-cCCCcEEEeCCCCHHHHHHHHHHHHcC--CCCcCcCcccc
Confidence 345567899999975 444678889999999999999999887 78999999886
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.31 E-value=6.2e-13 Score=91.63 Aligned_cols=49 Identities=29% Similarity=0.722 Sum_probs=41.4
Q ss_pred CCCCchhhhhhcccCCcceEec-cCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
+..||||++++.+ .+.+..|+ |||.||..|+.+|++.+ .+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~~~--~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWLGSH--STCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTTTTC--CSCSSSCCCSC
T ss_pred CCcCccCCccccC-CCceEECCCCCCcccHHHHHHHHHcC--CcCcCCCCEeE
Confidence 5689999998654 45677787 99999999999999876 89999998763
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=5.3e-13 Score=97.98 Aligned_cols=53 Identities=26% Similarity=0.599 Sum_probs=45.0
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDM 203 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m 203 (268)
.....||||++++ ...+.++.|||||.||..|+.+|++.+ .+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~-~~~~~~~~l~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDF-ESRQLLRVLPCNHEFHAKCVDKWLKAN--RTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEEC-CBTCEEEEETTTEEEETTHHHHHHHHC--SSCTTTCCCCCCC
T ss_pred CCCCCCeECCccc-CCCCeEEEECCCCHhHHHHHHHHHHcC--CcCcCcCCcCCCC
Confidence 4567899999985 444678889999999999999999886 7999999988643
No 9
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.23 E-value=2.9e-12 Score=94.36 Aligned_cols=52 Identities=25% Similarity=0.612 Sum_probs=44.2
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
.....||||++.+ .....+.+|+|||.||..|+.+|++.. .+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~-~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDY-ALGESVRQLPCNHLFHDSCIVPWLEQH--DSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCC-CTTSCEEECTTSCEEETTTTHHHHTTT--CSCTTTCCCCCC
T ss_pred CCCCCCeeCCccc-cCCCCEEEeCCCCeecHHHHHHHHHcC--CcCcCcCCccCC
Confidence 3467899999984 444577889999999999999999876 899999999874
No 10
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.23 E-value=2.6e-12 Score=98.22 Aligned_cols=51 Identities=24% Similarity=0.528 Sum_probs=43.3
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
..+..||||++.+.. ...++.|||||.||..|+.+|++.+ .+||+||+.+.
T Consensus 38 ~~~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVK-GDVATELPCHHYFHKPCVSIWLQKS--GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCT-TCEEEEETTTEEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred CCCCCCcccChhhcC-CCcEEecCCCChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence 346689999998544 4578889999999999999999876 79999999875
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.23 E-value=3.4e-12 Score=100.42 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=43.4
Q ss_pred CCCCCCCchhhhhhcccC--------------CcceEeccCCccChHHHHHHHHcC---CCcCCCCCCcchhhh
Q 024406 147 NSMHHHCPICYEYLFDSL--------------RNTTVMKCGHTMHCECYHEMIKRD---NRYCCPICSKSVIDM 203 (268)
Q Consensus 147 ~~~~~~CpICle~lf~s~--------------~~v~~LpCGH~~H~~C~~~~~~~~---~~~~CPiCrksi~~m 203 (268)
...+.+|||||++|.+.. ..++.|+|||.||..||.+|+... ...+||+||+.+..+
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 345678999999975431 234478999999999999999531 147999999988754
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.21 E-value=4.4e-12 Score=91.32 Aligned_cols=53 Identities=28% Similarity=0.637 Sum_probs=44.1
Q ss_pred CCCCCCchhhhhhccc---CCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
..+..||||++.+.+. .+.++.++|||.||..|+.+|++.. .+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 4567899999987553 2445789999999999999999886 799999999863
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=5.4e-12 Score=90.07 Aligned_cols=52 Identities=29% Similarity=0.646 Sum_probs=43.1
Q ss_pred CCCCCCchhhhhhccc---CCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
.....||||++.+.+. ...++.++|||.||..|+.+|++.. .+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC--SSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC--CCCCCCCCccC
Confidence 4467899999987653 2334789999999999999999886 89999999875
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.19 E-value=7.5e-12 Score=88.05 Aligned_cols=51 Identities=27% Similarity=0.664 Sum_probs=42.9
Q ss_pred CCCCchhhhhhccc---CCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
+..||||++.+.+. .+.+..++|||.||..|+.+|++.+ .+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC--SBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC--CCCCCCCccCCc
Confidence 56899999987552 2445789999999999999999886 899999999863
No 15
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=2.5e-11 Score=86.59 Aligned_cols=51 Identities=25% Similarity=0.521 Sum_probs=41.5
Q ss_pred CCCCchhhh-hhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYE-YLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle-~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
+..||||++ .+.+....+.+++|||.|+..|+.+|+..+ ..+||+||+.+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-CCcCCCCCCccc
Confidence 468999999 655543344678999999999999997665 588999999986
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=1.5e-11 Score=88.06 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=42.6
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDM 203 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m 203 (268)
.+..||||++.+. ++++.++|||.||..|+.+|++.+ .+||+||+.+..+
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQN--PTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHHS--CSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHhCc--CcCcCCChhhHhh
Confidence 4578999999843 356889999999999999999876 8999999998743
No 17
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.07 E-value=8.2e-12 Score=93.96 Aligned_cols=60 Identities=23% Similarity=0.536 Sum_probs=46.5
Q ss_pred CCCCCchhhhhhcccCCcceEec--cCCccChHHHHHHHHcCCCcCCCCCCcchhhhhHHHHHHH
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMK--CGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRTWKRID 211 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp--CGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~~~~~~lD 211 (268)
.+..||||+|.+.. .++.++| |||.|+..|+..+.+.. .++||+||+++..+...|+++|
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~-~~~CP~CR~~~~~~~~~~~~~~ 71 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDE-NGLCPACRKPYPEDPAVYKPLS 71 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSS-CSBCTTTCCBCSSCSSCCCSCC
T ss_pred cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcC-CCCCCCCCCccCCCchhhccCC
Confidence 45689999997532 3445555 99999999999998654 5899999999988766665443
No 18
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.06 E-value=6.5e-11 Score=94.01 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=37.6
Q ss_pred CCCCchhhhhhccc---CCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcch
Q 024406 150 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSV 200 (268)
Q Consensus 150 ~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi 200 (268)
+..|+||++++.++ ..+++.|+|||.||..|+.+||+.+ .+||+||+.+
T Consensus 48 ~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~Cr~~~ 99 (106)
T 3dpl_R 48 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREW 99 (106)
T ss_dssp TSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC--SBCSSSCSBC
T ss_pred hCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC--CcCcCCCCcc
Confidence 44667776654322 1246778999999999999999876 8999999985
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=7.6e-11 Score=87.98 Aligned_cols=53 Identities=30% Similarity=0.713 Sum_probs=43.3
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcC-CCcCCCCCCcchh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-NRYCCPICSKSVI 201 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~-~~~~CPiCrksi~ 201 (268)
....||||++.+.++....+.|+|||.||..|+.+|++.. +..+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3568999999866554447788999999999999999763 2479999999875
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=8.7e-12 Score=89.98 Aligned_cols=52 Identities=23% Similarity=0.591 Sum_probs=42.8
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhhhHH
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRT 206 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~~~ 206 (268)
.....||||++.+.+ +.|+|||.||..|+.+|++.. .+||+||+.+......
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRH--RNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCC--SSCHHHHHCTTCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCc--CcCCCcCCcccCCCcc
Confidence 346789999997432 789999999999999999865 8999999998755433
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=8.1e-11 Score=85.69 Aligned_cols=49 Identities=33% Similarity=0.581 Sum_probs=40.9
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
.+..||||++.+.+ ++.+++|||.||..|+.+|++.. .+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYS--NRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHC--SSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcC--CcCCCcCcccCc
Confidence 35689999997543 55556999999999999999876 899999998863
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=5.8e-11 Score=86.25 Aligned_cols=49 Identities=16% Similarity=0.442 Sum_probs=41.2
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
.....||||++.+. ..+.|+|||.||..|+.+|+... .+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV----HPVSLPCKHVFCYLCVKGASWLG--KRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS----SEEEETTTEEEEHHHHHHCTTCS--SBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC----CCEEccCCCHHHHHHHHHHHHCC--CcCcCcCchhCH
Confidence 44578999999752 34678999999999999999876 899999999863
No 23
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=1.3e-10 Score=92.24 Aligned_cols=53 Identities=28% Similarity=0.637 Sum_probs=44.0
Q ss_pred CCCCCCchhhhhhccc---CCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
+.+..||||++.+.+. .+.++.++|||.||..|+.+|++.. .+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--SBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--CCCCCCCCcCcc
Confidence 3457899999986543 3445889999999999999999876 799999999874
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.3e-10 Score=86.25 Aligned_cols=48 Identities=25% Similarity=0.494 Sum_probs=40.3
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
.....||||++.+.+ + ++++|||.||..|+.+|++.. .+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---P-VVTKCRHYFCESCALEHFRAT--PRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---E-EECTTSCEEEHHHHHHHHHHC--SBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---e-eEccCCCHhHHHHHHHHHHCC--CcCCCcCcccc
Confidence 345689999997532 3 468999999999999999876 89999999985
No 25
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=86.97 Aligned_cols=53 Identities=28% Similarity=0.594 Sum_probs=42.0
Q ss_pred CCCCCCCchhhhhhcccCCcceEeccC-----CccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 147 NSMHHHCPICYEYLFDSLRNTTVMKCG-----HTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCG-----H~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
.+.+..|+||++++ +...+ .++||+ |.||..||++|+..++..+||+|+..+.
T Consensus 12 ~~~~~~C~IC~~~~-~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEG-DDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCC-CSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccc-cCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 34567899999984 43344 479996 9999999999998753469999999885
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.93 E-value=3e-10 Score=83.31 Aligned_cols=52 Identities=23% Similarity=0.586 Sum_probs=40.9
Q ss_pred CCCCCchhhhhhcccCCcceEec-cCCccChHHHHHHHHcCCCcCCCCCCcchhhhh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRDNRYCCPICSKSVIDMS 204 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~ 204 (268)
.+..||||++.|.+ + +.|+ |||.||..|+.+|++..+..+||+||+.+....
T Consensus 14 ~~~~C~IC~~~~~~---p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMTD---A-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCTT---C-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHhC---C-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 35689999997532 3 4588 999999999999998653479999999876443
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=3.9e-10 Score=80.55 Aligned_cols=49 Identities=20% Similarity=0.528 Sum_probs=39.5
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
.+..||||++.+. +++. ++|||.||..|+.+|++.. ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~---~p~~-~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC---SPKQ-TECGHRFCESCMAALLSSS-SPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES---SCCC-CSSSCCCCHHHHHHHHTTS-SCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc---CeeE-CCCCCHHHHHHHHHHHHhC-cCCCCCCCcCCCh
Confidence 3567999999753 2443 8999999999999999644 4899999998863
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.91 E-value=1.2e-09 Score=80.29 Aligned_cols=49 Identities=16% Similarity=0.440 Sum_probs=40.4
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
..+..||||++.| . ++ +.++|||+|++.|+.+|++.+ ..+||+|++.+.
T Consensus 6 ~~~~~C~IC~~~~-~--~P-v~~~CgH~fc~~Ci~~~~~~~-~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELM-K--DP-VIVSTGQTYERSSIQKWLDAG-HKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCC-S--SE-EEETTTEEEEHHHHHHHHTTT-CCBCTTTCCBCS
T ss_pred cccCCCCCccccc-c--CC-EEcCCCCeecHHHHHHHHHHC-cCCCCCCcCCCC
Confidence 3467899999964 3 24 457999999999999999874 489999999985
No 29
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=4.3e-10 Score=81.36 Aligned_cols=50 Identities=28% Similarity=0.701 Sum_probs=39.8
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHc-CCCcCCCCCCcchh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-DNRYCCPICSKSVI 201 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~-~~~~~CPiCrksi~ 201 (268)
.....||||++.+. ..+.|+|||.||..|+.+|++. ....+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC----CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 44678999999743 3456799999999999999973 12479999999875
No 30
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.89 E-value=2.2e-10 Score=92.74 Aligned_cols=50 Identities=22% Similarity=0.535 Sum_probs=0.9
Q ss_pred CCCCCchhhhhhccc--------------CCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcch
Q 024406 149 MHHHCPICYEYLFDS--------------LRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSV 200 (268)
Q Consensus 149 ~~~~CpICle~lf~s--------------~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi 200 (268)
...+|+||+++|.+. ...+..++|||.||..|+++||+.+ .+||+||+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREW 110 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--CcCCCCCCee
Confidence 356899999886431 1134446999999999999999886 8999999875
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.88 E-value=4.5e-10 Score=87.13 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=40.5
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
+..||||++.+. +++..++|||.||..|+.+|+... ..+||+||+++.
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCC
T ss_pred CCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCC
Confidence 457999999753 356559999999999999999876 479999999985
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.88 E-value=4.6e-10 Score=91.72 Aligned_cols=68 Identities=25% Similarity=0.629 Sum_probs=48.4
Q ss_pred CCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhhhH---HHHHHHHHHHhcCCChhhhcC
Q 024406 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSR---TWKRIDEEIEATVMPEDYRHK 226 (268)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~~---~~~~lD~~i~~~pmP~~y~~~ 226 (268)
..||||++.+. ..+.|||||+||..|+..|+..+ .+||+||+.+..... ....|+..+. .++++++..
T Consensus 54 ~~C~iC~~~~~----~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~~~~~i~~~~~--~l~~~~~~r 124 (138)
T 4ayc_A 54 LQCIICSEYFI----EAVTLNCAHSFCSYCINEWMKRK--IECPICRKDIKSKTYSLVLDNCINKMVN--NLSSEVKER 124 (138)
T ss_dssp SBCTTTCSBCS----SEEEETTSCEEEHHHHHHHTTTC--SBCTTTCCBCCCEEECHHHHHHHHHHHT--TSCHHHHHH
T ss_pred CCCcccCcccC----CceECCCCCCccHHHHHHHHHcC--CcCCCCCCcCCCCCCccchhHHHHHHHH--HhhHHHHHH
Confidence 46999999753 24578999999999999999876 899999999964322 1123333333 356665543
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.87 E-value=4.4e-10 Score=85.03 Aligned_cols=49 Identities=22% Similarity=0.597 Sum_probs=39.5
Q ss_pred CCCCCchhhhhhcccCCcceEec-cCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
.+..||||++.|. ++ +.|+ |||+|+..|+.+|+...+..+||+||+.+.
T Consensus 12 ~~~~C~IC~~~~~---~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT---DA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS---SC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc---Cc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4568999999643 23 4678 999999999999997543479999999973
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.5e-09 Score=76.73 Aligned_cols=45 Identities=27% Similarity=0.781 Sum_probs=35.5
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcC-CCcCCCCC
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-NRYCCPIC 196 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~-~~~~CPiC 196 (268)
..+..||||++.+. ..++|+|||.||..|+.+|++.. ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS----SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC----CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34578999999743 24567999999999999999842 14799998
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=1.4e-09 Score=86.12 Aligned_cols=53 Identities=28% Similarity=0.637 Sum_probs=43.8
Q ss_pred CCCCCCchhhhhhccc---CCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
.....||||++.+.+. ...++.++|||.||..|+++|++.. .+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence 4567899999986542 2344788999999999999999887 799999999863
No 36
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.84 E-value=2e-09 Score=79.20 Aligned_cols=49 Identities=24% Similarity=0.592 Sum_probs=39.8
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcC----CCcCCCCCCcchh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD----NRYCCPICSKSVI 201 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~----~~~~CPiCrksi~ 201 (268)
....||||++.+.+ + ++++|||.||..|+.+|+... ...+||+||+.+.
T Consensus 18 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLKE---P-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCSS---C-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhCc---c-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 35689999997432 3 478999999999999999872 1489999999886
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.83 E-value=7.8e-10 Score=84.99 Aligned_cols=48 Identities=25% Similarity=0.674 Sum_probs=40.0
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
...||||++.+. +++..++|||.||..|+..|+..+ .+||+||+.+..
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 468999999753 255556999999999999999875 899999999863
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=79.62 Aligned_cols=50 Identities=30% Similarity=0.710 Sum_probs=40.0
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHc----CCCcCCCCCCcchh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR----DNRYCCPICSKSVI 201 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~----~~~~~CPiCrksi~ 201 (268)
.....||||++.+ . ..+.|+|||.||..|+.+|++. ....+||+||+.+.
T Consensus 17 ~~~~~C~IC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELL-T---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCC-S---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCccc-C---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 3457899999974 3 2345799999999999999976 11489999999886
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.82 E-value=1e-09 Score=85.76 Aligned_cols=49 Identities=29% Similarity=0.678 Sum_probs=41.2
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
.+..||||++.+. +++..++|||.||..|+..|+..+ .+||+|++.+..
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 3568999999753 356666999999999999999876 899999999863
No 40
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.79 E-value=1.4e-09 Score=85.85 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=45.4
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhhh--HHHHHHHHHHHh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMS--RTWKRIDEEIEA 216 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~--~~~~~lD~~i~~ 216 (268)
+..||||++.+. ++ +.++|||.|+..|+.+|+... ..+||+||+.+.... .....|.+.|..
T Consensus 23 ~~~C~IC~~~~~---~p-~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 23 SISCQICEHILA---DP-VETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HTBCTTTCSBCS---SE-EECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred CCCCCCCCcHhc---Cc-EEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 467999999753 24 448999999999999999874 489999999987422 223445555544
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2e-09 Score=74.28 Aligned_cols=44 Identities=27% Similarity=0.891 Sum_probs=34.6
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHc-CCCcCCCCC
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-DNRYCCPIC 196 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~-~~~~~CPiC 196 (268)
....||||++.+.+ + +.|+|||.||..|+.+|+.. ....+||+|
T Consensus 14 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---P-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---C-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---c-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45789999997532 3 45899999999999999654 125899998
No 42
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.78 E-value=2.4e-09 Score=85.57 Aligned_cols=48 Identities=21% Similarity=0.616 Sum_probs=39.9
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
+..||||++.+. ..+.++|||.||..|+..|+... ..+||+||+.+..
T Consensus 52 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF----RPITTVCQHNVCKDCLDRSFRAQ-VFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHTT-CCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc----CcEEeeCCCcccHHHHHHHHhHC-cCCCCCCCccCCC
Confidence 357999999754 23557999999999999999865 4799999999964
No 43
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.76 E-value=6.4e-10 Score=81.45 Aligned_cols=49 Identities=31% Similarity=0.706 Sum_probs=39.2
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcC-----CCcCCCCCCcchh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-----NRYCCPICSKSVI 201 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~-----~~~~CPiCrksi~ 201 (268)
.+..||||++.+ .. + +.|+|||.|+..|+.+|++.. ...+||+||+.+.
T Consensus 11 ~~~~C~IC~~~~-~~--p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 11 EEVTCPICLELL-TE--P-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCEETTTTEEC-SS--C-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cCCCCcCCCccc-CC--e-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 356899999974 32 3 348999999999999999762 1479999999986
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.75 E-value=2.7e-09 Score=89.24 Aligned_cols=49 Identities=27% Similarity=0.686 Sum_probs=40.6
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
+..||||++.+. +++..++|||.||..|+..|+..+ ..+||+||+.+..
T Consensus 54 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSG-NKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTT-CCBCTTTCCBCCS
T ss_pred CCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhC-cCCCCCCCCcCCC
Confidence 347999999743 356667999999999999999874 4899999999853
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.74 E-value=2.3e-09 Score=85.17 Aligned_cols=74 Identities=22% Similarity=0.466 Sum_probs=52.0
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhhhH-HHHHHHHHHHhcCCChhhhcCee
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSR-TWKRIDEEIEATVMPEDYRHKKV 228 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~~-~~~~lD~~i~~~pmP~~y~~~~v 228 (268)
+..||||++.+.+ + +.++|||.|+..|+.+|++.+ ..+||+||+.+..... .-..+.++|.+ .
T Consensus 18 ~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~~i~~-----------l 81 (118)
T 3hct_A 18 KYECPICLMALRE---A-VQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLENQLFPDNFAKREILS-----------L 81 (118)
T ss_dssp GGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHT-----------S
T ss_pred CCCCCcCChhhcC---e-EECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCHHhcccCHHHHHHHcc-----------c
Confidence 4689999997532 3 557999999999999999876 3599999999975321 11334454544 2
Q ss_pred EEEc--cCCCCcc
Q 024406 229 WILC--NDCNDTT 239 (268)
Q Consensus 229 ~I~C--nDC~~~s 239 (268)
.|.| ..|+.+.
T Consensus 82 ~v~C~n~gC~~~~ 94 (118)
T 3hct_A 82 MVKCPNEGCLHKM 94 (118)
T ss_dssp EEECSSTTCCCEE
T ss_pred eeECCCCCCCCEE
Confidence 4667 5677543
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.69 E-value=3.9e-09 Score=87.96 Aligned_cols=48 Identities=21% Similarity=0.624 Sum_probs=39.9
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
...||||++.+. ++ +.|+|||.|+..|+..|+... ..+||+||..+..
T Consensus 78 ~~~C~IC~~~~~---~p-v~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVY---QP-VTTECFHNVCKDCLQRSFKAQ-VFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCS---SE-EECTTSCEEEHHHHHHHHHTT-CCBCTTTCCBCCT
T ss_pred CCEeecCChhhc---CC-EEcCCCCchhHHHHHHHHHhC-CCcCCCCCccCCC
Confidence 457999999643 23 448999999999999999876 5799999999974
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.66 E-value=2.5e-09 Score=84.24 Aligned_cols=48 Identities=29% Similarity=0.885 Sum_probs=39.8
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
+..||||++.+.+ .+.|+|||+|+..|+..|+..+ ..+||+||+.+..
T Consensus 15 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKA-SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTT-TSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHC-cCCCCCCCcccCc
Confidence 4579999997542 4567999999999999999775 5899999999864
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=9.1e-09 Score=80.00 Aligned_cols=48 Identities=25% Similarity=0.701 Sum_probs=38.5
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcC-CCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-NRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~-~~~~CPiCrksi~ 201 (268)
...||||++.+ . ++ +.++|||.||..|+..|+... +..+||+||+.+.
T Consensus 21 ~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELI-K--EP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCC-S--SC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhh-c--Ce-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 45899999964 3 23 348999999999999999864 1368999999886
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.51 E-value=2.3e-08 Score=71.80 Aligned_cols=50 Identities=26% Similarity=0.560 Sum_probs=40.3
Q ss_pred CCCCCCCchhhhhhcccCCcceEe--ccCCc-cChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 147 NSMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~L--pCGH~-~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
...+..|+||++.. ..+.++ ||||. |...|+..|.+.+ .+||+||+.+.+
T Consensus 5 ~~~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRP----KNGCIVHGKTGHLMACFTCAKKLKKRN--KPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSC----SCEEEEETTEEEEEECHHHHHHHHHTT--CCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCC----CCEEEECCCCCChhhHHHHHHHHHHcC--CcCCCcCcchhc
Confidence 34567899999963 234555 99999 7899999999865 799999998864
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.47 E-value=2.7e-08 Score=71.25 Aligned_cols=50 Identities=22% Similarity=0.571 Sum_probs=39.8
Q ss_pred CCCCCCchhhhhhcccCCcceEe--ccCCc-cChHHHHHHHHcCCCcCCCCCCcchhhh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDNRYCCPICSKSVIDM 203 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~L--pCGH~-~H~~C~~~~~~~~~~~~CPiCrksi~~m 203 (268)
.....|+||++..- ...++ ||||. |...|+..|.+.+ .+||+||+.+.+.
T Consensus 5 ~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKRPR----DGNIIHGRTGHLVTCFHCARRLKKAG--ASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSSBS----CEEEEETTEEEEEECHHHHHHHHHTT--CBCTTTCCBCCEE
T ss_pred CcCCCCcccCCcCC----CeEEEecCCCCHhHHHHHHHHHHHhC--CcCCCcCchhhce
Confidence 44678999999632 23344 99998 9999999999775 7999999998643
No 51
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=6.8e-08 Score=72.23 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=38.5
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
..+|+||.+.+. . ...-..|+|.||..||..||++.+..+||+|+....
T Consensus 15 i~~C~IC~~~i~-~--g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLI-Q--GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCS-S--SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcc-c--CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 468999999754 2 233348999999999999998653478999997764
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=2.7e-08 Score=69.35 Aligned_cols=45 Identities=22% Similarity=0.503 Sum_probs=36.2
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
.....||||++.+ .. .+.|+|||+|+..|+..| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~-~~---p~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEA-KC---PKLLPCLHTLCSGCLEAS-----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSC-BC---CSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCcc-CC---eEEcCCCCcccHHHHccC-----CCCCCcCCcEee
Confidence 4567899999974 32 367899999999999772 379999999875
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.41 E-value=5.7e-08 Score=81.36 Aligned_cols=63 Identities=22% Similarity=0.408 Sum_probs=45.9
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhhhHH-HHHHHHHHHhc
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRT-WKRIDEEIEAT 217 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~~~-~~~lD~~i~~~ 217 (268)
...||||++.|.+ + +.++|||+|+..|+.+|++.+ ..+||+||+.+...... -..+..+|...
T Consensus 18 ~~~C~IC~~~~~~---p-v~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 18 KYECPICLMALRE---A-VQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp GGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCChhhcC---c-EECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 4689999997542 4 458999999999999999875 36999999998753211 13445555543
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.39 E-value=2.7e-08 Score=82.12 Aligned_cols=47 Identities=19% Similarity=0.444 Sum_probs=38.7
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcch
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSV 200 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi 200 (268)
.+..||||++.|.+ + +.++|||.|+..|+.+|++.+ ..+||+||+.+
T Consensus 30 ~~~~C~IC~~~~~~---p-v~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRR---P-FQAQCGHRYCSFCLASILSSG-PQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHGGGS-CEECHHHHHTT
T ss_pred cCcCCCCCChhhcC---c-EECCCCCccCHHHHHHHHhcC-CCCCCCCCCcc
Confidence 35689999997542 4 458999999999999999866 47999999965
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=5.4e-08 Score=77.09 Aligned_cols=45 Identities=22% Similarity=0.556 Sum_probs=37.1
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
+..||||++.+ . +++...+|||.|+..|+..|+. .+||+||+.+.
T Consensus 22 ~~~C~IC~~~~-~--~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNIL-R--EPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCC-S--SCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred CCCCCCCChHh-h--CccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 56899999964 3 3454449999999999999985 68999999985
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.35 E-value=5.8e-08 Score=71.34 Aligned_cols=43 Identities=23% Similarity=0.607 Sum_probs=36.1
Q ss_pred CCCCchhhhhhcccCCcceEeccCCc-cChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
+..|+||++.+. ..+.|||||. |+..|+..| .+||+||+.+..
T Consensus 24 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 468999999742 4677899999 999999877 589999999874
No 57
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.34 E-value=2.1e-07 Score=66.52 Aligned_cols=52 Identities=25% Similarity=0.461 Sum_probs=39.5
Q ss_pred cCCCCCCCchhhhhhcccCCcceEeccC--C---ccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 146 ENSMHHHCPICYEYLFDSLRNTTVMKCG--H---TMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCG--H---~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
|......|.||+++. ..+. ++||. + .+|..|+.+|+..+++.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~~---~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL---GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEEC---SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecCC---CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 455677899999972 2333 68864 4 999999999997643589999998753
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.33 E-value=2.5e-07 Score=88.44 Aligned_cols=49 Identities=24% Similarity=0.609 Sum_probs=40.9
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
....||||++.+ ..++.+||||.||..|+..|+... ..+||+||+.+..
T Consensus 331 ~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~-~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESE-GQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHT-CSBCTTTCCBCCE
T ss_pred CCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcC-CCCCCCCCCccCC
Confidence 346899999974 246789999999999999999843 4899999998864
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.29 E-value=3.2e-07 Score=69.32 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=39.6
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
.+..||||++.| . .-++++|||+|-+.||.+|+..+ .+||+|+..+.
T Consensus 13 ~~~~CpI~~~~m-~---dPV~~~cGhtf~r~~I~~~l~~~--~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLM-T---DPVRLPSGTVMDRSIILRHLLNS--PTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBC-S---SEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred hheECcccCchh-c---CCeECCCCCEECHHHHHHHHhcC--CCCCCCcCCCC
Confidence 467899999964 3 24567899999999999999875 89999999885
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.22 E-value=4.9e-07 Score=68.88 Aligned_cols=50 Identities=20% Similarity=0.511 Sum_probs=37.2
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHc----C--CCcCCCC--CCcc
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR----D--NRYCCPI--CSKS 199 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~----~--~~~~CPi--Crks 199 (268)
....||||+++ +.....+..++|||.|...|+.+|++. + ...+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999997 443222233479999999999999864 1 1368999 9998
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.18 E-value=9.8e-07 Score=77.73 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=41.1
Q ss_pred cCCCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
+......||||++.| . +| +++||||+|.+.||..|+..+ ..+||+|+.++.
T Consensus 204 ~~~~~~~c~i~~~~~-~--dP-v~~~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELM-R--EP-CITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBC-S--SE-EECSSCCEEETTHHHHHHHHT-CSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHh-c--CC-eECCCCCEECHHHHHHHHHHC-CCCCcCCCCCCc
Confidence 345577899999964 3 24 468899999999999999876 356999999986
No 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.18 E-value=4.9e-07 Score=70.60 Aligned_cols=47 Identities=9% Similarity=0.115 Sum_probs=39.3
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
.+..||||++.| . ..++++|||+|.+.||.+|+..+ .+||+|+..+.
T Consensus 28 ~~~~CpI~~~~m-~---dPV~~~cGhtf~r~~I~~~l~~~--~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLM-T---DPVRLPSGTIMDRSIILRHLLNS--PTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBC-S---SEEEETTTEEEEHHHHHHHTTSC--SBCSSSCCBCC
T ss_pred HhhCCcCccCcc-c---CCeECCCCCEEchHHHHHHHHcC--CCCCCCCCCCC
Confidence 467899999964 3 24567899999999999999865 89999999886
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=6.1e-07 Score=65.26 Aligned_cols=47 Identities=23% Similarity=0.503 Sum_probs=38.2
Q ss_pred CCCCCCCchhhhhhcccCCcceEeccCCc-cChHHHHHHHHcCCCcCCCCCCcchhhh
Q 024406 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDNRYCCPICSKSVIDM 203 (268)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~~CPiCrksi~~m 203 (268)
......|+||++.. ..+++|||||. |...|+.. . .+||+||+.|...
T Consensus 12 ~~~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~----~--~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKY----F--QQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHH----C--SSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCC----CCEEEECCCChhhhHHHHhc----C--CCCCCCCcchhce
Confidence 34567899999962 35788999999 99999973 2 6999999998754
No 64
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.15 E-value=7.1e-07 Score=69.41 Aligned_cols=47 Identities=13% Similarity=0.081 Sum_probs=39.5
Q ss_pred CCCCCchhhhhhcccCCcceEeccC-CccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCG-H~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
.+..||||++.| . +| ++++|| |+|-+.||.+|+... .+||+|++.+.
T Consensus 21 ~~~~CpI~~~~m-~--dP-V~~~cG~htf~r~cI~~~l~~~--~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLM-C--DP-VVLPSSRVTVDRSTIARHLLSD--QTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBC-S--SE-EECTTTCCEEEHHHHHHHTTTS--CBCTTTCSBCC
T ss_pred HhcCCcCccccc-c--CC-eECCCCCeEECHHHHHHHHHhC--CCCCCCCCCCC
Confidence 367899999964 3 24 468999 999999999999875 89999999886
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=5e-07 Score=66.27 Aligned_cols=43 Identities=23% Similarity=0.546 Sum_probs=34.6
Q ss_pred CCCCchhhhhhcccCCcceEeccCCc-cChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
+..||||++.+ ..++.|||||. |...|+.. . .+||+||+.+..
T Consensus 25 ~~~C~IC~~~~----~~~~~~pCgH~~~C~~C~~~----~--~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN----IAIVFVPCGHLVTCKQCAEA----V--DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC----CCBCCSSSCCCCBCHHHHHH----C--SBCTTTCCBCCC
T ss_pred CCCCCcCCCCC----CCEEEecCCCHHHHHHHhhC----C--CCCccCCceecC
Confidence 35799999973 24567899999 99999952 2 699999999865
No 66
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=1.9e-06 Score=66.06 Aligned_cols=48 Identities=29% Similarity=0.587 Sum_probs=37.1
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcC----CCcCCCC--CCcc
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD----NRYCCPI--CSKS 199 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~----~~~~CPi--Crks 199 (268)
.+..||||++. |. +||+...|||+|.+.||.+|+..+ +..+||+ |++.
T Consensus 6 ~~~~CPI~~~~-~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEE-MK--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSB-CS--SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCch-hc--CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45689999996 44 355543599999999999999753 1379999 9866
No 67
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.05 E-value=9.1e-07 Score=83.64 Aligned_cols=54 Identities=26% Similarity=0.481 Sum_probs=40.1
Q ss_pred CCCCCCchhhhhhcccC-Ccce---EeccCCccChHHHHHHHHcCC---------CcCCCCCCcchh
Q 024406 148 SMHHHCPICYEYLFDSL-RNTT---VMKCGHTMHCECYHEMIKRDN---------RYCCPICSKSVI 201 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~-~~v~---~LpCGH~~H~~C~~~~~~~~~---------~~~CPiCrksi~ 201 (268)
....+|+||++.+.++. .+.. .++|||.||..|+.+|+++.. ..+||.|++.|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45679999999866522 2222 358999999999999998631 147999999875
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.90 E-value=1.2e-06 Score=65.35 Aligned_cols=45 Identities=31% Similarity=0.671 Sum_probs=36.5
Q ss_pred CCCCchhhhhhcccCCcceEeccCCc-cChHHHHHHHHcCCCcCCCCCCcchhhhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDNRYCCPICSKSVIDMS 204 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~~CPiCrksi~~m~ 204 (268)
+..|+||++.+ ..++.|||||. |...|+..| .+||+||+.+...-
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL------QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC------SBCTTTCCBCCEEE
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc------CcCCCCCchhhCeE
Confidence 45799999863 35778999999 999999754 48999999998643
No 69
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.84 E-value=1.4e-05 Score=68.87 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=39.0
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
.+..||||++.|- +|| ++||||+|-+.||..|+..+ ..+||+|+.++.
T Consensus 105 ~~f~CPI~~elm~---DPV-~~~~Ghtfer~~I~~~l~~~-~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELMR---EPC-ITPSGITYDRKDIEEHLQRV-GHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBCS---SEE-ECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCC
T ss_pred HhhcccCccccCC---CCe-ECCCCCEECHHHHHHHHHhC-CCCCCCCcCCCC
Confidence 4568999999643 244 56999999999999999875 247999999885
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.82 E-value=4e-06 Score=76.41 Aligned_cols=51 Identities=22% Similarity=0.453 Sum_probs=42.5
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCC--CCcchh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPI--CSKSVI 201 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPi--Crksi~ 201 (268)
..+..||||++.| . +||+.+.|||+|-+.||.+|++.++..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f-~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPY-E--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBC-S--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcc-c--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4567899999974 3 5888789999999999999997643578999 999875
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.47 E-value=2.1e-05 Score=73.84 Aligned_cols=43 Identities=26% Similarity=0.677 Sum_probs=35.9
Q ss_pred CCCCchhhhhhcccCCcceEeccCCc-cChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
+..||||++.+ . .++.|||||. |+..|+..| .+||+||..+..
T Consensus 295 ~~~C~IC~~~~-~---~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKE-V---SVVFIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSB-C---CEEEETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCccCCcC-C---ceEEcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 46899999964 2 4677899999 999999866 589999999864
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.33 E-value=6.9e-05 Score=53.37 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
+...|||+++-|- ++|...++||+|-+.++.+|++.+ .+||+.++.+.
T Consensus 2 ~~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~ 49 (61)
T 2bay_A 2 SHMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLS 49 (61)
T ss_dssp --CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCC
T ss_pred CeEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCC
Confidence 4568999999754 355544999999999999999876 67999999885
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.83 E-value=0.00049 Score=54.23 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=40.0
Q ss_pred CCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhhh
Q 024406 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMS 204 (268)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~ 204 (268)
.|++|.-++. .-.+.+||.|.|..+|+..|.+.. ..+||+|+.+|.+.+
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~-~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKG-DKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTT-CCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhcc-CCCCcCcCCeeeeeE
Confidence 4788877643 246788999999999999998765 589999999998754
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.73 E-value=0.0041 Score=55.43 Aligned_cols=48 Identities=25% Similarity=0.595 Sum_probs=35.5
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcch
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSV 200 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi 200 (268)
-..|.||.+-+.. .+.--.|+|.||..|+..|+++.+..+||.|+...
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4568888875442 22223499999999999999765457999999764
No 75
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=91.10 E-value=0.061 Score=40.67 Aligned_cols=28 Identities=29% Similarity=0.701 Sum_probs=17.4
Q ss_pred ecCCCCccccccccCCcCCCccceeeccccccc
Q 024406 67 ICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFY 99 (268)
Q Consensus 67 ~C~~C~~~q~v~~~C~~Cg~~f~~y~C~~C~l~ 99 (268)
+|..|+.++.+ |..||+. .|||.-|+=.
T Consensus 33 fCPeCgq~Le~---lkACGA~--~yFC~~C~~L 60 (81)
T 2jrp_A 33 LCPDCRQPLQV---LKACGAV--DYFCQNGHGL 60 (81)
T ss_dssp ECSSSCSCCCE---EEETTEE--EECCTTTTCC
T ss_pred cCcchhhHHHH---HHhcCCc--CeeeccCCCE
Confidence 56666655433 5666655 8888888643
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.03 E-value=0.072 Score=41.51 Aligned_cols=44 Identities=20% Similarity=0.587 Sum_probs=36.2
Q ss_pred CCCCchhhhhhcccCCcceEeccC-CccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCG-H~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
..+|-.|.-. + -..+.|. |.+...|+..+|+.+ .+||||.+.+-
T Consensus 28 ~~nCKsCWf~-~-----k~LV~C~dHYLCl~CLtlmL~~S--drCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFE-N-----KGLVECNNHYLCLNCLTLLLSVS--NRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSC-C-----SSEEECSSCEEEHHHHHHTCSSS--SEETTTTEECC
T ss_pred cccChhhccc-c-----CCeeeecchhhHHHHHHHHHhhc--cCCcccCCcCC
Confidence 4688888843 2 2467885 999999999999887 89999999985
No 77
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=89.87 E-value=0.11 Score=42.49 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=31.1
Q ss_pred cCeeEEEccCCCCcccc-------------ceeEe------eecCCCCCCccccccCCC
Q 024406 225 HKKVWILCNDCNDTTEV-------------YFHII------GQKCSHCKSYNTRSIAPP 264 (268)
Q Consensus 225 ~~~v~I~CnDC~~~s~~-------------~~H~l------g~kC~~C~SyNT~~~~~~ 264 (268)
...+...|++||..... .+|++ ..+||.|||.+...++|.
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~ 124 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGR 124 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESS
T ss_pred ecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecCC
Confidence 34567899999987642 56776 689999999999887653
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.94 E-value=0.18 Score=38.00 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=26.2
Q ss_pred CCCCCchhhhhhcccCCcceE-eccCCccChHHHHHH
Q 024406 149 MHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEM 184 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~ 184 (268)
.+..|+||+++.+. .++.. |.|||+|...|+..+
T Consensus 2 ee~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 35679999986443 34444 999999999999983
No 79
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=83.82 E-value=0.33 Score=38.24 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=29.7
Q ss_pred cCeeEEEccCCCCccccceeEeee-cCCCCCCccccccCCC
Q 024406 225 HKKVWILCNDCNDTTEVYFHIIGQ-KCSHCKSYNTRSIAPP 264 (268)
Q Consensus 225 ~~~v~I~CnDC~~~s~~~~H~lg~-kC~~C~SyNT~~~~~~ 264 (268)
...+...|.+||......- ... +||.|+|.+++.++|.
T Consensus 69 ~~p~~~~C~~CG~~~e~~~--~~~~~CP~Cgs~~~~i~~G~ 107 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKPNA--LDYGVCEKCHSKNVIITQGN 107 (119)
T ss_dssp EECCEEECSSSSCEECSCC--STTCCCSSSSSCCCEEEESS
T ss_pred eccceEEcCCCCCEEeCCC--CCCCcCccccCCCcEEecCC
Confidence 3456799999999876642 245 8999999999988764
No 80
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=74.02 E-value=2.1 Score=35.24 Aligned_cols=51 Identities=22% Similarity=0.450 Sum_probs=35.2
Q ss_pred ecCCCCCCCchhhhhhcccCCcceEe-ccCCccChHHHHHHHH---------cCCCcCCCCCCcch
Q 024406 145 IENSMHHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIK---------RDNRYCCPICSKSV 200 (268)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~v~~L-pCGH~~H~~C~~~~~~---------~~~~~~CPiCrksi 200 (268)
.+...+..|.||.+. . .+..- .|--.||..|+..-+. ....-.||+|....
T Consensus 58 d~Dg~~d~C~vC~~G----G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp CTTSCBCSCSSSCCC----S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred cCCCCCCeecccCCC----C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 356778899999974 1 22222 6889999999996542 12257899999543
No 81
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=73.38 E-value=2 Score=33.55 Aligned_cols=9 Identities=33% Similarity=0.852 Sum_probs=4.5
Q ss_pred ceeeccccc
Q 024406 89 GEYFCDICK 97 (268)
Q Consensus 89 ~~y~C~~C~ 97 (268)
+.|||.-|+
T Consensus 80 vdYFC~~ch 88 (101)
T 2jne_A 80 VDYFCQHGH 88 (101)
T ss_dssp EEEEETTTT
T ss_pred cchhhccCC
Confidence 345555554
No 82
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.33 E-value=0.54 Score=36.66 Aligned_cols=76 Identities=26% Similarity=0.542 Sum_probs=41.7
Q ss_pred cCccceeecCccCcccccc-c-----------cCcceeecCCCCCCCchhhhhhcccCCcceE-eccCCccChHHHHHHH
Q 024406 119 GGRENYFHCKRCGSCYSTS-L-----------RNNHLCIENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI 185 (268)
Q Consensus 119 G~~~~ffHC~~C~~C~s~~-l-----------~~~H~C~e~~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~ 185 (268)
|.+++...|+.|+.-+-.+ | ..+=.|.+= ..|.||.+.=.+. ..+.. -.|...||..|++.-|
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~~-~~ll~Cd~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKNA-DNMLFCDSCDRGFHMECCDPPL 96 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCTT-CCCEECTTTCCEECGGGCSSCC
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCCc-cceEEcCCCCCeeecccCCCCC
Confidence 3456778888886554322 1 122223321 1577887631111 12222 2688999999997654
Q ss_pred HcC--CCcCCCCCCc
Q 024406 186 KRD--NRYCCPICSK 198 (268)
Q Consensus 186 ~~~--~~~~CPiCrk 198 (268)
... +...||.|+.
T Consensus 97 ~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 97 TRMPKGMWICQICRP 111 (112)
T ss_dssp SSCCSSCCCCTTTSC
T ss_pred CCCCCCCeECCCCCC
Confidence 321 2468998874
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=68.70 E-value=4.8 Score=30.86 Aligned_cols=69 Identities=25% Similarity=0.701 Sum_probs=34.7
Q ss_pred ceeecCCCCcccccc--ccCCcCCCccceeecccccccc-CCCCcCeeecCCCC---cccccC-ccceeecCccCccccc
Q 024406 64 KQVICSVCDTEQPVA--QVCTNCGVNMGEYFCDICKFYD-DDIEKGQFHCDDCG---ICRIGG-RENYFHCKRCGSCYST 136 (268)
Q Consensus 64 ~~v~C~~C~~~q~v~--~~C~~Cg~~f~~y~C~~C~l~d-~~~~k~~yHC~~Cg---iCR~G~-~~~ffHC~~C~~C~s~ 136 (268)
...+|..|+...... ..|..|+..|=. .|--.. ....+..+.|+.|. +|+.++ .+....|+.|+.-|-+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~----~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHG----MCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHT 81 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECT----TTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEG
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcCh----HHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhH
Confidence 455666665543321 355566544311 121111 11223556777655 444443 2458889988865544
No 84
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=62.27 E-value=1.1 Score=34.77 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=27.1
Q ss_pred CCCCchhhhhhcccCCcceE-eccCCccChHHHHHHHHc---C---CCcCCCCCCc
Q 024406 150 HHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKR---D---NRYCCPICSK 198 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~~~---~---~~~~CPiCrk 198 (268)
-..|+.|.+. .+....++. --|...+|..|+....+. . ..+.||.|+.
T Consensus 59 c~~c~~c~~~-~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 59 CGEVDQNEET-QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp TCCBCCHHHH-CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cCcccccccc-cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 3456666554 222122222 368999999998654321 0 1378999874
No 85
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=57.45 E-value=0.49 Score=37.12 Aligned_cols=86 Identities=22% Similarity=0.576 Sum_probs=47.3
Q ss_pred CCCcccccC--------ccceeecCccCc-----cccccc-------cCcceeecCCCCCCCchhhhhhcccCCcceE-e
Q 024406 112 DCGICRIGG--------RENYFHCKRCGS-----CYSTSL-------RNNHLCIENSMHHHCPICYEYLFDSLRNTTV-M 170 (268)
Q Consensus 112 ~CgiCR~G~--------~~~ffHC~~C~~-----C~s~~l-------~~~H~C~e~~~~~~CpICle~lf~s~~~v~~-L 170 (268)
.|+||..|+ +++...|+.|+. |+...+ ...=.|.+= ..|.||...- +. ..+.. -
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~~-~~-~~ll~Cd 77 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTSE-ND-DQLLFCD 77 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCCT-TT-TTEEECS
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCcccccC-CC-CceEEcC
Confidence 456665443 467888888875 444321 112233321 1577887642 11 12222 2
Q ss_pred ccCCccChHHHHHHHHcC--CCcCCCCCCcchhh
Q 024406 171 KCGHTMHCECYHEMIKRD--NRYCCPICSKSVID 202 (268)
Q Consensus 171 pCGH~~H~~C~~~~~~~~--~~~~CPiCrksi~~ 202 (268)
.|...||..|+..=|... +...||.|...+.+
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 688999999998533321 14668887655543
No 86
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=55.09 E-value=6.6 Score=30.03 Aligned_cols=80 Identities=24% Similarity=0.663 Sum_probs=41.6
Q ss_pred CCCcccccCc-cceeecCccCc-----ccccccc----CcceeecCCCCCCCchhhhhhcccCCcceEe---ccCCccCh
Q 024406 112 DCGICRIGGR-ENYFHCKRCGS-----CYSTSLR----NNHLCIENSMHHHCPICYEYLFDSLRNTTVM---KCGHTMHC 178 (268)
Q Consensus 112 ~CgiCR~G~~-~~ffHC~~C~~-----C~s~~l~----~~H~C~e~~~~~~CpICle~lf~s~~~v~~L---pCGH~~H~ 178 (268)
.|.||..+|. ++...|+.|+. |+.+.+. +.=.|.+= ..|.||.+.- ++..+| .|.-.||.
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~~----~~~~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQSG----EDSKMLVCDTCDKGYHT 81 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCCS----CCTTEEECSSSCCEEEG
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCccC----CCCCeeECCCCCcHHhH
Confidence 4566665553 55677777764 3433321 11112110 1466777641 122233 68899999
Q ss_pred HHHHHHHHcC--CCcCCCCCCc
Q 024406 179 ECYHEMIKRD--NRYCCPICSK 198 (268)
Q Consensus 179 ~C~~~~~~~~--~~~~CPiCrk 198 (268)
.|++.-+... ....||.|..
T Consensus 82 ~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 82 FCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp GGSSSCCSSCCSSCCCCHHHHC
T ss_pred HhcCCccccCCCCCcCCcCCcC
Confidence 9997544321 1356776654
No 87
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=53.39 E-value=4.4 Score=33.48 Aligned_cols=30 Identities=27% Similarity=0.770 Sum_probs=20.6
Q ss_pred eeeccccccccCCCCcCeeecCCCCccccc
Q 024406 90 EYFCDICKFYDDDIEKGQFHCDDCGICRIG 119 (268)
Q Consensus 90 ~y~C~~C~l~d~~~~k~~yHC~~CgiCR~G 119 (268)
-|-|+.|.+=--...++-|||+.||+|---
T Consensus 98 ~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 98 QYHCESCGICRIGPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp EEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred eecCCCCCceeccCCcCcEECCcCCeeecc
Confidence 355555554433346899999999999543
No 88
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=52.95 E-value=2.9 Score=25.29 Aligned_cols=30 Identities=17% Similarity=0.505 Sum_probs=18.0
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHH
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECY 181 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~ 181 (268)
|...||.|...++.- +.+. -=|..+|+.||
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 345678887766543 2222 23777887774
No 89
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=50.25 E-value=13 Score=28.51 Aligned_cols=56 Identities=20% Similarity=0.435 Sum_probs=41.4
Q ss_pred ecCCCCCCCchhhhhhcccCCc-c--eEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 145 IENSMHHHCPICYEYLFDSLRN-T--TVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~-v--~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
+.....+.|-||.|++=...+. + .-.-|+=.+.+.||+--++.. +..||-|+...-
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG-~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG-TQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS-CSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc-CccccccCCccc
Confidence 3445568999999996333232 2 224689999999999988887 689999987664
No 90
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=49.84 E-value=4.4 Score=28.37 Aligned_cols=42 Identities=19% Similarity=0.463 Sum_probs=29.0
Q ss_pred CCCCCchhhhhhcc---cCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 149 MHHHCPICYEYLFD---SLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 149 ~~~~CpICle~lf~---s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
....|+.|.+.+.. ..+.+.. =|..+|..| ++|-.|+++|.+
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C----------F~C~~C~~~L~~ 58 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC----------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT----------CBCSSSCCBCTT
T ss_pred hCccCcccCCcccCCCCCceeEEE--CcceeCccc----------CEehhcCCCCCC
Confidence 34679999988764 2233333 377889776 578899998863
No 91
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=49.70 E-value=14 Score=23.11 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=11.1
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 4 ~~~C~~C~~~f~~~~~ 19 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYY 19 (57)
T ss_dssp -CBCTTTCCBCSCHHH
T ss_pred CccCCCCcchhCChHH
Confidence 3788888888875443
No 92
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.78 E-value=6.3 Score=27.47 Aligned_cols=43 Identities=16% Similarity=0.399 Sum_probs=29.9
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
.....|+.|.+.+......+.. =|..+|..| ++|-.|++++.+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C----------F~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQC----------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTT----------CCCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEecccc----------CeECCCCCCCCC
Confidence 4457899999987643222223 377889876 478889998875
No 93
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=48.21 E-value=8.7 Score=28.77 Aligned_cols=26 Identities=15% Similarity=0.595 Sum_probs=13.6
Q ss_pred eeecCCCCccccccccCCcCCCccce
Q 024406 65 QVICSVCDTEQPVAQVCTNCGVNMGE 90 (268)
Q Consensus 65 ~v~C~~C~~~q~v~~~C~~Cg~~f~~ 90 (268)
...|..|+..-+....||.||..+..
T Consensus 18 ~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 18 TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred ceECccccccCCCcccCcchhhHHHH
Confidence 33455565554444455555555544
No 94
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.80 E-value=6.7 Score=27.01 Aligned_cols=40 Identities=18% Similarity=0.449 Sum_probs=27.5
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
...|+.|.+.+......+. .=|..+|..| ++|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C----------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV--ALDRVFHVGC----------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE--CSSSEECTTT----------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE--ECCCeEcccC----------CcccccCCcCC
Confidence 4678888887765322222 3378889876 47888998885
No 95
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=44.86 E-value=11 Score=23.63 Aligned_cols=15 Identities=27% Similarity=0.475 Sum_probs=9.9
Q ss_pred cCCCCCCcchhhhhH
Q 024406 191 YCCPICSKSVIDMSR 205 (268)
Q Consensus 191 ~~CPiCrksi~~m~~ 205 (268)
|.|++|.+++...+.
T Consensus 2 ~~C~~C~~~f~~~~~ 16 (57)
T 1bbo_A 2 YICEECGIRXKKPSM 16 (57)
T ss_dssp CBCTTTCCBCSSHHH
T ss_pred CcCCCCcCcCCCHHH
Confidence 667777777765433
No 96
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.67 E-value=6 Score=27.99 Aligned_cols=41 Identities=20% Similarity=0.536 Sum_probs=27.9
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
...|+.|.+.+......+ ..=|..+|..| ++|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~C----------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV--EYKGTVWHKDC----------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE--ECSSCEEETTT----------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEE--EECcccccccc----------CchhhCCCccCC
Confidence 467899998876432222 23378889776 478889988864
No 97
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=42.19 E-value=2.3 Score=35.58 Aligned_cols=67 Identities=24% Similarity=0.507 Sum_probs=43.5
Q ss_pred CCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhhhHHHHHHHHHHHhcCCChhhhcCeeEE
Q 024406 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWI 230 (268)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~~~~~~lD~~i~~~pmP~~y~~~~v~I 230 (268)
..|+.|.+.+... +.+.. =|..+|..| ++|-.|+++|.+-+ + ......+
T Consensus 116 ~~C~~C~~~I~~~-~~v~a--~~~~~H~~C----------F~C~~C~~~L~~~~-~-----------------~~~~g~~ 164 (192)
T 1b8t_A 116 DGCPRCGQAVYAA-EKVIG--AGKSWHKSC----------FRCAKCGKSLESTT-L-----------------ADKDGEI 164 (192)
T ss_dssp EECTTTSCEECSS-SCEEE--TTEEECTTT----------CBCTTTCCBCCSSS-E-----------------EEETTEE
T ss_pred CcCCCCCCEecCc-EEEec--CCCccchhc----------CCccccCCCCCCCc-c-----------------cccCCEE
Confidence 4599999987653 33433 378899876 58999999986421 1 1122357
Q ss_pred EccCCCCccccceeEeeecCCCCC
Q 024406 231 LCNDCNDTTEVYFHIIGQKCSHCK 254 (268)
Q Consensus 231 ~CnDC~~~s~~~~H~lg~kC~~C~ 254 (268)
+|.+|-.+ .++-||..|+
T Consensus 165 yC~~cy~~------~f~~kc~~C~ 182 (192)
T 1b8t_A 165 YCKGCYAK------NFGPKGFGFG 182 (192)
T ss_dssp EEHHHHHH------HTCCCCCCCC
T ss_pred eCHHHHHH------hcCCcCCCCC
Confidence 88777643 2466888776
No 98
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.97 E-value=11 Score=25.46 Aligned_cols=9 Identities=33% Similarity=1.091 Sum_probs=6.3
Q ss_pred cccCCcCCC
Q 024406 78 AQVCTNCGV 86 (268)
Q Consensus 78 ~~~C~~Cg~ 86 (268)
-..||.||+
T Consensus 19 ~k~CP~CG~ 27 (50)
T 3j20_Y 19 NKFCPRCGP 27 (50)
T ss_dssp SEECSSSCS
T ss_pred cccCCCCCC
Confidence 456788876
No 99
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=41.25 E-value=13 Score=23.31 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=11.1
Q ss_pred cCCCCCCcchhhh
Q 024406 191 YCCPICSKSVIDM 203 (268)
Q Consensus 191 ~~CPiCrksi~~m 203 (268)
+.||+|.+.+.+-
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 8899999999854
No 100
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=40.95 E-value=17 Score=24.96 Aligned_cols=9 Identities=33% Similarity=1.073 Sum_probs=4.9
Q ss_pred cccCCcCCC
Q 024406 78 AQVCTNCGV 86 (268)
Q Consensus 78 ~~~C~~Cg~ 86 (268)
...||.||.
T Consensus 18 ~~fCPkCG~ 26 (55)
T 2k4x_A 18 HRFCPRCGP 26 (55)
T ss_dssp SCCCTTTTT
T ss_pred cccCcCCCC
Confidence 345666654
No 101
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=40.80 E-value=16 Score=34.52 Aligned_cols=50 Identities=20% Similarity=0.521 Sum_probs=35.6
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCc--cChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~--~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
....|||=+..|. .|++-..|.|+ |-..=|-++.......+||+|.+.+.
T Consensus 248 vSL~CPlS~~ri~---~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMK---YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCS---SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCcccccc---ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 3468998777643 48889999987 55554545544434689999999984
No 102
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.49 E-value=11 Score=25.85 Aligned_cols=41 Identities=20% Similarity=0.459 Sum_probs=28.7
Q ss_pred CCCCchhhhhhcc--cCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~--s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
...|+.|.+.+.. +.. .+..=|..+|..| ++|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~--~~~a~~~~wH~~C----------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK--YISFEERQWHNDC----------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS--CEECSSCEECTTT----------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcc--eEEECCcccCccc----------CEeccCCCcCCC
Confidence 4579999998764 222 2223588999876 588899998863
No 103
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=40.42 E-value=11 Score=32.07 Aligned_cols=52 Identities=21% Similarity=0.472 Sum_probs=32.9
Q ss_pred CCCCchhhhhhcccCC--cceE-eccCCccChHHHHH------HHH----cCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLR--NTTV-MKCGHTMHCECYHE------MIK----RDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~--~v~~-LpCGH~~H~~C~~~------~~~----~~~~~~CPiCrksi~~ 202 (268)
...||||.....++.. .++. -.|...||..|..- .+. .. .|.||.|+..-..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~-~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESV-AYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHH-CCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCC-eeECcCCCCCCCH
Confidence 3569999876433321 1333 25789999999743 121 11 3999999987653
No 104
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=40.30 E-value=19 Score=27.41 Aligned_cols=32 Identities=19% Similarity=0.598 Sum_probs=24.1
Q ss_pred CCCCCCchhhhhhcccCCcceEec---cCCccChHHHHHH
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMK---CGHTMHCECYHEM 184 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~Lp---CGH~~H~~C~~~~ 184 (268)
..+..|+||-- |++ -..+| ||=.||..||.+.
T Consensus 13 ~~D~~C~VC~~--~t~---~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV--WTA---ESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC--CCS---SCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc--ccc---cceeccccccccccHhhcccc
Confidence 45788999974 443 22445 6999999999997
No 105
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=39.98 E-value=5.3 Score=28.00 Aligned_cols=38 Identities=26% Similarity=0.690 Sum_probs=27.2
Q ss_pred CCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
.|+.|.+.+... +.+..+ |..+|..| ++|..|+++|.+
T Consensus 2 ~C~~C~~~I~~~-~~v~a~--~~~~H~~C----------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFA-ERVTSL--GKDWHRPC----------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGG-GEEEET--TEEEETTT----------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECc-eEEEEC--CccccCCC----------CCccccCccCCC
Confidence 478888877643 234444 88999876 589999998874
No 106
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=39.37 E-value=17 Score=34.18 Aligned_cols=49 Identities=22% Similarity=0.535 Sum_probs=35.8
Q ss_pred CCCCchhhhhhcccCCcceEeccCCc--cChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~--~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
...|||=+.-|. .|++-..|.|+ |-..=|-++.......+||+|++.+.
T Consensus 215 SL~CPlS~~ri~---~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLT---IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCS---SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceec---cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 457998777643 58888999987 66555555554444689999999985
No 107
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.74 E-value=7.4 Score=26.73 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=28.1
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
...|+.|.+.+.... ..+..=|..+|..| ++|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H~~C----------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGS--RKLEYGGQTWHEHC----------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSS--CEECSTTCCEETTT----------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCc--cEEEECccccCccc----------CeECCCCCcCCC
Confidence 457888988876432 22333478899876 578889988864
No 108
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=37.84 E-value=22 Score=23.80 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=11.9
Q ss_pred CcCCCCCCcchhhhhHH
Q 024406 190 RYCCPICSKSVIDMSRT 206 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~~ 206 (268)
.+.|++|.+.+...+..
T Consensus 29 ~~~C~~C~~~f~~~~~l 45 (82)
T 2kmk_A 29 PYPCQYCGKRFHQKSDM 45 (82)
T ss_dssp CEECSSSCCEESSHHHH
T ss_pred CeeCCcCChhhCCHHHH
Confidence 47888888888754443
No 109
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=37.68 E-value=14 Score=26.13 Aligned_cols=47 Identities=17% Similarity=0.391 Sum_probs=31.6
Q ss_pred CCCCCCchhhhhhcccCCcceE-eccCCccChHHHHHHHHcC--CCcCCCCCCcc
Q 024406 148 SMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKRD--NRYCCPICSKS 199 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~~~~--~~~~CPiCrks 199 (268)
+....|.||.+. . .+.. -.|...||..|++..|... ....||.|+..
T Consensus 10 ~~~~~C~vC~~~----~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG----T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC----T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC----C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 345679999753 1 2222 2688999999998776532 24789999743
No 110
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.94 E-value=11 Score=26.64 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=27.2
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
...|+.|.+.+.+ +.+. .=|..+|..| ++|-.|++.|.+
T Consensus 15 ~~~C~~C~~~I~~--~~~~--a~~~~~H~~C----------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTG--PFMV--AGEFKYHPEC----------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCS--CCBC--CTTCCBCTTS----------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcCc--eEEE--ECCceecccc----------CCccCCCCccCC
Confidence 3468999988762 2233 3378889775 588899998863
No 111
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=36.79 E-value=18 Score=18.69 Aligned_cols=15 Identities=33% Similarity=0.897 Sum_probs=11.8
Q ss_pred cCCCCCCcchhhhhH
Q 024406 191 YCCPICSKSVIDMSR 205 (268)
Q Consensus 191 ~~CPiCrksi~~m~~ 205 (268)
|.|++|.|++...+.
T Consensus 2 ~~C~~C~k~f~~~~~ 16 (27)
T 1znf_A 2 YKCGLCERSFVEKSA 16 (27)
T ss_dssp CBCSSSCCBCSSHHH
T ss_pred ccCCCCCCcCCCHHH
Confidence 789999999875443
No 112
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.58 E-value=12 Score=26.51 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=27.6
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
...|+.|.+.+......+.. =|..+|..| ++|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C----------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGC----------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTT----------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccC----------CeecCCCCccCC
Confidence 45789999887632222222 378889876 578899998863
No 113
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=36.09 E-value=12 Score=27.86 Aligned_cols=34 Identities=26% Similarity=0.598 Sum_probs=22.9
Q ss_pred cccccCCcCCCccceeeccccccccCCCCcCeeecCCCCcccccC
Q 024406 76 PVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGG 120 (268)
Q Consensus 76 ~v~~~C~~Cg~~f~~y~C~~C~l~d~~~~k~~yHC~~CgiCR~G~ 120 (268)
.....|++||... +|+ +...+++|+.||-=-.||
T Consensus 25 ~~~y~Cp~CG~~~---------v~r--~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 25 NEDHACPNCGEDR---------VDR--QGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp HSCEECSSSCCEE---------EEE--EETTEEEETTTCCEEECC
T ss_pred cccCcCCCCCCcc---------eec--cCCCeEECCCCCCEecCC
Confidence 3345677777643 222 457899999999877776
No 114
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.72 E-value=21 Score=18.45 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=12.5
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 3889999999876544
No 115
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=35.55 E-value=19 Score=18.78 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=12.7
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 3899999999986544
No 116
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=35.09 E-value=18 Score=24.54 Aligned_cols=8 Identities=38% Similarity=0.987 Sum_probs=4.4
Q ss_pred ccCCcCCC
Q 024406 79 QVCTNCGV 86 (268)
Q Consensus 79 ~~C~~Cg~ 86 (268)
-.||+||-
T Consensus 24 IrCpyCGy 31 (48)
T 4ayb_P 24 VRCPYCGY 31 (48)
T ss_dssp SCCTTTCC
T ss_pred cccCccCc
Confidence 35666654
No 117
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.91 E-value=9.2 Score=26.70 Aligned_cols=41 Identities=27% Similarity=0.613 Sum_probs=29.4
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
....|+.|.+.+... +.+. .=|..+|..| ++|..|+++|.+
T Consensus 8 ~~~~C~~C~~~I~~~-~~v~--a~~~~~H~~C----------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFA-EKVS--SLGKDWHKFC----------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTT-TEEE--ETTEEEETTT----------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECC-eEEE--ECCeEeeCCC----------CCCCCCCCccCC
Confidence 346799999987643 2333 3478889776 589999999874
No 118
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=34.69 E-value=22 Score=18.47 Aligned_cols=16 Identities=13% Similarity=0.721 Sum_probs=12.4
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 2 SFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCTTTCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 3899999999975443
No 119
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=34.19 E-value=18 Score=22.94 Aligned_cols=15 Identities=13% Similarity=0.773 Sum_probs=10.6
Q ss_pred cCCCCCCcchhhhhH
Q 024406 191 YCCPICSKSVIDMSR 205 (268)
Q Consensus 191 ~~CPiCrksi~~m~~ 205 (268)
|.|++|.+++...+.
T Consensus 3 ~~C~~C~~~f~~~~~ 17 (60)
T 2adr_A 3 FVCEVCTRAFARQEH 17 (60)
T ss_dssp BCCTTTCCCBSCHHH
T ss_pred CcCCCCccccCCHHH
Confidence 778888888775433
No 120
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=34.12 E-value=13 Score=22.38 Aligned_cols=16 Identities=38% Similarity=1.038 Sum_probs=13.0
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.++||+|+..+-|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 4899999999887654
No 121
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.97 E-value=11 Score=27.01 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=30.0
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDM 203 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m 203 (268)
.....|+.|.+.+... +.+. .=|..+|..| ++|-.|+++|.+.
T Consensus 13 ~~~~~C~~C~~~I~~~-e~v~--a~~~~wH~~C----------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL-ERLC--VNGHFFHRSC----------FRCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTT-TBCC--BTTBCCBTTT----------CBCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccc-eEEE--ECCCeeCCCc----------CEEcCCCCCcCCC
Confidence 4456799999887643 2233 3478899876 4788999988743
No 122
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.73 E-value=15 Score=26.26 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=29.5
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
....|+.|.+.+... +.+..+ |..+|..| ++|-.|+++|.+
T Consensus 14 ~~~~C~~C~~~I~~~-~~v~a~--~~~wH~~C----------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QSLLAL--DKQWHVSC----------FKCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSS-CCEEET--TEEECTTT----------CBCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCC-eEEEEC--Cccccccc----------CCcCcCCCCcCC
Confidence 456799999987643 334443 78899876 588899988863
No 123
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.37 E-value=16 Score=19.12 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=12.4
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.|++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQ 18 (28)
T ss_dssp SEECSSSCCEESCHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 3889999999876443
No 124
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=33.24 E-value=15 Score=25.81 Aligned_cols=28 Identities=21% Similarity=0.666 Sum_probs=22.5
Q ss_pred hcCeeEEEccCCCCccccceeEeeecCCCCC
Q 024406 224 RHKKVWILCNDCNDTTEVYFHIIGQKCSHCK 254 (268)
Q Consensus 224 ~~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~ 254 (268)
+..+..|+|.-||.+ .||+--..|..||
T Consensus 12 r~~ktH~~CrRCG~~---syH~qK~~Ca~CG 39 (57)
T 1vq8_1 12 KNTTTHTKCRRCGEK---SYHTKKKVCSSCG 39 (57)
T ss_dssp CCCCCEEECTTTCSE---EEETTTTEETTTC
T ss_pred cCCCccccccccCCh---hhhcccccccccc
Confidence 345789999999975 5777778899998
No 125
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.23 E-value=12 Score=25.60 Aligned_cols=41 Identities=20% Similarity=0.519 Sum_probs=27.5
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
...|+.|.+.+......+. .=|..+|..| ++|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C----------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKME--YKGSSWHETC----------FICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEE--ETTEEEETTT----------TCCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEE--ECcCeecccC----------CcccccCCccCC
Confidence 3578889988764322222 3477888776 478889988764
No 126
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=32.96 E-value=24 Score=19.88 Aligned_cols=16 Identities=25% Similarity=0.661 Sum_probs=12.9
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 11 ~~~C~~C~k~f~~~~~ 26 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSDH 26 (37)
T ss_dssp SBCCTTTCCCBSSHHH
T ss_pred CccCCCCCcccCcHHH
Confidence 4899999999986543
No 127
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.84 E-value=15 Score=25.63 Aligned_cols=68 Identities=18% Similarity=0.357 Sum_probs=42.4
Q ss_pred CCCCchhhhhhcc--cCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhhhHHHHHHHHHHHhcCCChhhhcCe
Q 024406 150 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKK 227 (268)
Q Consensus 150 ~~~CpICle~lf~--s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~~~~~~lD~~i~~~pmP~~y~~~~ 227 (268)
...|+.|.+.+.. ..+. +..=|..+|..| ++|-.|+++|.+. .+ ....
T Consensus 5 ~~~C~~C~~~I~~~g~~~~--~~a~~~~wH~~C----------F~C~~C~~~L~~~-~f-----------------~~~~ 54 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF--ICFQDSQWHSEC----------FNCGKCSVSLVGK-GF-----------------LTQN 54 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE--EEETTEEEEGGG----------CBCTTTCCBCSSS-CE-----------------EEET
T ss_pred CCCCccCCCcccCCCCcee--EEECCcccCccc----------CChhhCCCcCCCC-ce-----------------EeEC
Confidence 4578899988764 2222 333478899876 4888999988632 11 1122
Q ss_pred eEEEccCCCCccccceeEeeecCCCC
Q 024406 228 VWILCNDCNDTTEVYFHIIGQKCSHC 253 (268)
Q Consensus 228 v~I~CnDC~~~s~~~~H~lg~kC~~C 253 (268)
..++|.+|-.+. ++-+|..+
T Consensus 55 g~~yC~~cy~~~------f~~~C~~~ 74 (76)
T 1x68_A 55 KEIFCQKCGSGM------DTDISGPS 74 (76)
T ss_dssp TEEEETTTTCCC------CCCSSSSS
T ss_pred CEEECHHHhhhh------hCCcCCCC
Confidence 358999988643 34466543
No 128
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=32.54 E-value=11 Score=27.58 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=25.3
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
...|+.|.+.+..+.+.+..+ |..+|..| ++|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~C----------F~C~~C~~~L~ 44 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYK--NRFWHDTC----------FRCAKCLHPLA 44 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEET--TEEEETTT----------CCCSSSCCCTT
T ss_pred CCcCcccCCcccCCceEEEEC--ccChhhcC----------CcccccCCCCC
Confidence 456888888765322333333 67777765 47778888775
No 129
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=32.36 E-value=17 Score=25.60 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=16.1
Q ss_pred ceeecCCCCcc--ccccccCCcCCCc
Q 024406 64 KQVICSVCDTE--QPVAQVCTNCGVN 87 (268)
Q Consensus 64 ~~v~C~~C~~~--q~v~~~C~~Cg~~ 87 (268)
++.+|..|... ++..-.||.|++.
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~r 35 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAP 35 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCE
T ss_pred CCCcCcCCCCCcCCCccccCcCCCCC
Confidence 35788888863 4556677777754
No 130
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=32.24 E-value=17 Score=26.29 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=21.6
Q ss_pred eeecCCCCccccc------cccCCcCCCccceeeccccccc
Q 024406 65 QVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (268)
Q Consensus 65 ~v~C~~C~~~q~v------~~~C~~Cg~~f~~y~C~~C~l~ 99 (268)
.|.|.-|..+|.+ ...|..||..+++-.=.+-+|-
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGGKA~l~ 47 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIK 47 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSSSCEEC
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEEeecCCcceeee
Confidence 5677777777765 2357777777766544444443
No 131
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=31.86 E-value=28 Score=24.33 Aligned_cols=26 Identities=23% Similarity=0.645 Sum_probs=21.3
Q ss_pred ccceeecCCCCccccc-cccCCcCCCc
Q 024406 62 DVKQVICSVCDTEQPV-AQVCTNCGVN 87 (268)
Q Consensus 62 ~~~~v~C~~C~~~q~v-~~~C~~Cg~~ 87 (268)
....+||+.|+...++ +..|..||..
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HhchhhhccccCcCCcccccccCCCCC
Confidence 3468999999999887 6789999854
No 132
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=31.73 E-value=27 Score=23.23 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=9.7
Q ss_pred CcCCCCCCcchhhhh
Q 024406 190 RYCCPICSKSVIDMS 204 (268)
Q Consensus 190 ~~~CPiCrksi~~m~ 204 (268)
.|.|++|.+++...+
T Consensus 17 ~~~C~~C~k~f~~~~ 31 (74)
T 2lce_A 17 PYKCDRCQASFRYKG 31 (74)
T ss_dssp SBCCTTSSCCBSCHH
T ss_pred CeECCCCCceeCCHH
Confidence 467777777776543
No 133
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=31.48 E-value=17 Score=27.94 Aligned_cols=31 Identities=39% Similarity=0.831 Sum_probs=25.0
Q ss_pred hcCeeEEEccCCCCccccceeEeeecCCCCC-------Ccc
Q 024406 224 RHKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYN 257 (268)
Q Consensus 224 ~~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~-------SyN 257 (268)
+..+..|+|.-||. ..||+--..|..|| +||
T Consensus 11 r~~KtHtlCrRCG~---~syH~qK~~Ca~CGyps~r~R~Yn 48 (94)
T 3iz5_l 11 RRNKTHTLCVRCGR---RSFHLQKSTCSSCGYPAARIRKYN 48 (94)
T ss_dssp CCCCSEEECTTTCS---EEEEGGGTEETTTCSSCSSCCCCS
T ss_pred cCCCccceecCcCc---hhhhcccccccccCCchhhccccc
Confidence 34567999999997 45777778999999 777
No 134
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.06 E-value=16 Score=19.33 Aligned_cols=16 Identities=25% Similarity=0.823 Sum_probs=12.3
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLAS 18 (27)
T ss_dssp TEEETTTTEEESCHHH
T ss_pred CcCCCCCCcccCCHHH
Confidence 3889999999875443
No 135
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.88 E-value=27 Score=19.43 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=12.8
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (36)
T 2elr_A 9 THLCDMCGKKFKSKGT 24 (36)
T ss_dssp SCBCTTTCCBCSSHHH
T ss_pred CeecCcCCCCcCchHH
Confidence 4899999999986544
No 136
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.78 E-value=20 Score=18.72 Aligned_cols=16 Identities=25% Similarity=0.764 Sum_probs=12.4
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSA 18 (27)
T ss_dssp CEECSSSSCEESSHHH
T ss_pred CccCCCcChhhCCHHH
Confidence 3889999999876543
No 137
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.55 E-value=17 Score=33.26 Aligned_cols=24 Identities=33% Similarity=0.898 Sum_probs=21.0
Q ss_pred EEEccCCCCccccceeEeeecCCCCCCc
Q 024406 229 WILCNDCNDTTEVYFHIIGQKCSHCKSY 256 (268)
Q Consensus 229 ~I~CnDC~~~s~~~~H~lg~kC~~C~Sy 256 (268)
...|+-|+ ..+|+.-.||++||+-
T Consensus 208 ~l~Cs~C~----t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 208 YLSCSLCA----CEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEETTTC----CEEECCTTSCSSSCCC
T ss_pred EEEeCCCC----CEEeecCcCCcCCCCC
Confidence 78899999 6788889999999984
No 138
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=30.15 E-value=17 Score=27.98 Aligned_cols=30 Identities=30% Similarity=0.827 Sum_probs=25.1
Q ss_pred cCeeEEEccCCCCccccceeEeeecCCCCC-------Ccc
Q 024406 225 HKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYN 257 (268)
Q Consensus 225 ~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~-------SyN 257 (268)
..+..|+|.-||. ..||+--..|..|| +||
T Consensus 12 ~~KtHtlCrRCG~---~syH~qK~~Ca~CGyps~r~R~Yn 48 (94)
T 4a18_A 12 HQKTHTLCRRCGK---ATYHKQKLRCAACGYPDAKMRRYD 48 (94)
T ss_dssp CCCCEEECTTTCS---EEEETTTTEESSSCGGGSSCCCCT
T ss_pred CCCccceecCcCc---hhhhhccccccccCCcHHHhcCcc
Confidence 3567999999997 45787778999999 898
No 139
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=30.07 E-value=37 Score=22.88 Aligned_cols=15 Identities=33% Similarity=0.760 Sum_probs=10.8
Q ss_pred cCCCCCCcchhhhhH
Q 024406 191 YCCPICSKSVIDMSR 205 (268)
Q Consensus 191 ~~CPiCrksi~~m~~ 205 (268)
|.|++|.|++...+.
T Consensus 5 y~C~~C~k~F~~~~~ 19 (60)
T 4gzn_C 5 FFCNFCGKTYRDASG 19 (60)
T ss_dssp EECTTTCCEESSHHH
T ss_pred ccCCCCCCEeCCHHH
Confidence 778888888875443
No 140
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.02 E-value=18 Score=25.63 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=29.2
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
.....|+.|.+.+.+ +.+. -=|..+|..| ++|-.|+++|.+
T Consensus 13 ~~~~~C~~C~~~I~~--~~v~--a~~~~~H~~C----------F~C~~C~~~L~~ 53 (79)
T 2cor_A 13 LGKYICQKCHAIIDE--QPLI--FKNDPYHPDH----------FNCANCGKELTA 53 (79)
T ss_dssp CCCCBCTTTCCBCCS--CCCC--CSSSCCCTTT----------SBCSSSCCBCCT
T ss_pred cCCCCCccCCCEecc--eEEE--ECcceeCCCC----------CEeCCCCCccCC
Confidence 335679999998763 2333 3478899776 588999999874
No 141
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.00 E-value=21 Score=27.98 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=23.0
Q ss_pred eeEEEccCCCCccccceeEeeecCCCCCCccccc
Q 024406 227 KVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRS 260 (268)
Q Consensus 227 ~v~I~CnDC~~~s~~~~H~lg~kC~~C~SyNT~~ 260 (268)
+.-..|.|||-++.... ...-+|+.|+|-|...
T Consensus 65 v~p~~C~~CG~~F~~~~-~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAEI-NIPSRCPKCKSEWIEE 97 (105)
T ss_dssp ECCCBBTTTCCBCCCCS-SCCSSCSSSCCCCBCC
T ss_pred EECcChhhCcCeecccC-CCCCCCcCCCCCccCC
Confidence 44578999998761110 2346999999999765
No 142
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=29.88 E-value=60 Score=23.54 Aligned_cols=13 Identities=15% Similarity=0.787 Sum_probs=7.2
Q ss_pred cceeecCccCccc
Q 024406 122 ENYFHCKRCGSCY 134 (268)
Q Consensus 122 ~~ffHC~~C~~C~ 134 (268)
+....|+.|..-+
T Consensus 39 ~~ll~CD~C~~~y 51 (77)
T 3shb_A 39 DKQLMCDECDMAF 51 (77)
T ss_dssp GGEEECTTTCCEE
T ss_pred cceeEeCCCCCcc
Confidence 4556666665433
No 143
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=29.55 E-value=24 Score=18.54 Aligned_cols=16 Identities=19% Similarity=0.675 Sum_probs=12.5
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|+.|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1paa_A 2 AYACGLCNRAFTRRDL 17 (30)
T ss_dssp CSBCTTTCCBCSSSHH
T ss_pred CcCCcccCcccCChHH
Confidence 3889999999876544
No 144
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=29.46 E-value=28 Score=19.45 Aligned_cols=17 Identities=24% Similarity=0.790 Sum_probs=13.1
Q ss_pred CcCCCCCCcchhhhhHH
Q 024406 190 RYCCPICSKSVIDMSRT 206 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~~ 206 (268)
.|.|++|.+.+...+..
T Consensus 2 p~~C~~C~k~F~~~~~L 18 (33)
T 1rim_A 2 KFACPECPKRFMRSDHL 18 (33)
T ss_dssp CCCCSSSCCCCSSHHHH
T ss_pred cccCCCCCchhCCHHHH
Confidence 38999999999865443
No 145
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.22 E-value=23 Score=23.31 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=19.0
Q ss_pred CcCCCCCCcchhhhhHHHHHHHHHHHhcCCC
Q 024406 190 RYCCPICSKSVIDMSRTWKRIDEEIEATVMP 220 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~~~~~lD~~i~~~pmP 220 (268)
.|.|++|.+.+...+.+.+-+..--...|-|
T Consensus 37 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p 67 (70)
T 1x5w_A 37 PFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67 (70)
T ss_dssp SEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred CEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence 4899999999986655444443333333433
No 146
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=29.10 E-value=25 Score=28.68 Aligned_cols=22 Identities=27% Similarity=0.907 Sum_probs=15.8
Q ss_pred ccccCCc--CCC--cc----ceeecccccc
Q 024406 77 VAQVCTN--CGV--NM----GEYFCDICKF 98 (268)
Q Consensus 77 v~~~C~~--Cg~--~f----~~y~C~~C~l 98 (268)
....||+ ||+ -| +|+||.+|.+
T Consensus 117 ~~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp CSCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred CcCcCCCccCCCceEecccCCCcccCCCce
Confidence 3568999 987 33 5788888864
No 147
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=29.05 E-value=20 Score=18.71 Aligned_cols=15 Identities=27% Similarity=0.864 Sum_probs=11.9
Q ss_pred cCCCCCCcchhhhhH
Q 024406 191 YCCPICSKSVIDMSR 205 (268)
Q Consensus 191 ~~CPiCrksi~~m~~ 205 (268)
|.|++|.+.+...+.
T Consensus 3 ~~C~~C~k~f~~~~~ 17 (29)
T 1rik_A 3 FACPECPKRFMRSDH 17 (29)
T ss_dssp EECSSSSCEESCSHH
T ss_pred ccCCCCCchhCCHHH
Confidence 789999999875543
No 148
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=29.01 E-value=40 Score=27.11 Aligned_cols=52 Identities=21% Similarity=0.475 Sum_probs=35.0
Q ss_pred ecCCCCCCCchhhhhhcccCCcceE-eccCCccChHHHHHHH------H---cCCCcCCCCCCcchh
Q 024406 145 IENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI------K---RDNRYCCPICSKSVI 201 (268)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~------~---~~~~~~CPiCrksi~ 201 (268)
.+...+..|.||.+. -.+.. =.|-..||..|+...+ + ....-.|++|+.+-+
T Consensus 52 d~Dg~~~~C~vC~dG-----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp CTTSCBSSCTTTCCC-----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCCCCcCeecCCC-----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 456677889999974 11211 1578999999999652 1 112578999986654
No 149
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=28.83 E-value=34 Score=23.60 Aligned_cols=13 Identities=23% Similarity=0.838 Sum_probs=7.7
Q ss_pred cCCCCCCcchhhh
Q 024406 191 YCCPICSKSVIDM 203 (268)
Q Consensus 191 ~~CPiCrksi~~m 203 (268)
|.|++|.+++...
T Consensus 32 ~~C~~C~k~f~~~ 44 (88)
T 1llm_C 32 FACDICGRKFARS 44 (88)
T ss_dssp EECTTTCCEESSH
T ss_pred ccCCCCCCccCCH
Confidence 5666666666543
No 150
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.71 E-value=17 Score=25.34 Aligned_cols=39 Identities=21% Similarity=0.464 Sum_probs=27.4
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
...|+.|.+.+.+ +.+.. =|..+|..| ++|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~a--~~~~~H~~C----------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE--NYLSA--MDTVWHPEC----------FVCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS--SCEEE--TTEEECTTT----------CBCSSSCCBSCS
T ss_pred CCccccCCCeecc--eeEEE--CCCeEecCc----------CChhhCCCCCCC
Confidence 3578888888764 23333 367888776 578899998864
No 151
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.63 E-value=23 Score=18.33 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=12.3
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGN 17 (29)
T ss_dssp CEECTTTSCEESCHHH
T ss_pred CccCCCCCCccCChhH
Confidence 3789999999875443
No 152
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.55 E-value=40 Score=30.76 Aligned_cols=25 Identities=24% Similarity=0.632 Sum_probs=21.3
Q ss_pred cceeecCCCCccccc-cccCCcCCCc
Q 024406 63 VKQVICSVCDTEQPV-AQVCTNCGVN 87 (268)
Q Consensus 63 ~~~v~C~~C~~~q~v-~~~C~~Cg~~ 87 (268)
.+-+.|+.|+++..+ -..|++||..
T Consensus 206 ~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 206 LRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 357999999999876 4689999987
No 153
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=28.39 E-value=31 Score=25.05 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=18.8
Q ss_pred ccceeecCCCCccccccccCCcCCCc
Q 024406 62 DVKQVICSVCDTEQPVAQVCTNCGVN 87 (268)
Q Consensus 62 ~~~~v~C~~C~~~q~v~~~C~~Cg~~ 87 (268)
...+..|..|...+ ..+.||+||..
T Consensus 8 ~~~~~AC~~C~~~~-~~~~CPnC~s~ 32 (69)
T 1ryq_A 8 GSSEKACRHCHYIT-SEDRCPVCGSR 32 (69)
T ss_dssp ---CEEETTTCBEE-SSSSCTTTCCC
T ss_pred CchhhhHHhCCccc-cCCcCCCccCC
Confidence 34688999999977 77899999853
No 154
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=28.26 E-value=7.2 Score=27.76 Aligned_cols=50 Identities=22% Similarity=0.404 Sum_probs=31.9
Q ss_pred CCCCchhhhhhcccCCcceE-eccCCccChHHHHHHHHcC--CCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKRD--NRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~~~~--~~~~CPiCrksi~ 201 (268)
...|+||...- + ...++. =.|.-.||..|+..-+... ..+.||.|...+.
T Consensus 18 ~~~C~~C~~~~-~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPD-D-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCC-S-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCC-C-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34699998752 2 112222 2688999999997544321 2588999986654
No 155
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.07 E-value=21 Score=23.75 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=8.8
Q ss_pred CcCCCCCCcchhhh
Q 024406 190 RYCCPICSKSVIDM 203 (268)
Q Consensus 190 ~~~CPiCrksi~~m 203 (268)
.|.|++|.+.+...
T Consensus 14 ~~~C~~C~k~f~~~ 27 (72)
T 1x6e_A 14 PYGCVECGKAFSRS 27 (72)
T ss_dssp CEECSSSCCEESSH
T ss_pred CccCCCCCCccCCH
Confidence 36677777766543
No 156
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.06 E-value=24 Score=18.39 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=12.4
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~~~f~~~~~ 18 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTS 18 (30)
T ss_dssp CEECTTTCCEESCHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 3889999999876543
No 157
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=27.74 E-value=33 Score=25.70 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=26.1
Q ss_pred ceeecCCCCccccc------cccCCcCCCccceeeccccccc
Q 024406 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (268)
Q Consensus 64 ~~v~C~~C~~~q~v------~~~C~~Cg~~f~~y~C~~C~l~ 99 (268)
-.|.|..|..+|.| ...|..||..+++-.=.+-+|-
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PTGGKa~l~ 74 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLS 74 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCCCEECCSSBCEEC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCEEeccCCCCeEec
Confidence 37889999998887 2479999988877654444443
No 158
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.41 E-value=55 Score=21.82 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=9.6
Q ss_pred cCCCCCCcchhhhhH
Q 024406 191 YCCPICSKSVIDMSR 205 (268)
Q Consensus 191 ~~CPiCrksi~~m~~ 205 (268)
|.|++|.+.+...+.
T Consensus 8 ~~C~~C~k~f~~~~~ 22 (78)
T 2d9h_A 8 LQCEICGFTCRQKAS 22 (78)
T ss_dssp EECSSSCCEESSHHH
T ss_pred eECCCCCCeeCCHHH
Confidence 667777777765443
No 159
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.39 E-value=24 Score=25.25 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=24.3
Q ss_pred ceeecCCCCccccc------cccCCcCCCccceeecccccc
Q 024406 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKF 98 (268)
Q Consensus 64 ~~v~C~~C~~~q~v------~~~C~~Cg~~f~~y~C~~C~l 98 (268)
-.|.|..|..+|.+ ...|..||..+++-.=.+-+|
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTGGKa~l 54 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIV 54 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCEEEECCSSSCEE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCEEecCCCCcEEE
Confidence 36888888888876 236888888877655444444
No 160
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=27.28 E-value=37 Score=22.20 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=4.9
Q ss_pred cCCcCCCccc
Q 024406 80 VCTNCGVNMG 89 (268)
Q Consensus 80 ~C~~Cg~~f~ 89 (268)
.|+.||..|.
T Consensus 16 ~C~~C~k~F~ 25 (62)
T 1vd4_A 16 KCPVCSSTFT 25 (62)
T ss_dssp ECSSSCCEEE
T ss_pred cCCCCCchhc
Confidence 4555555443
No 161
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.26 E-value=16 Score=24.66 Aligned_cols=44 Identities=20% Similarity=0.436 Sum_probs=29.4
Q ss_pred CCCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhh
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDM 203 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m 203 (268)
.....|+.|.+.+... +.+ +..=|..+|..|| +|-.|++++.+.
T Consensus 9 ~~~~~C~~C~~~i~~~-e~~-~~~~~~~~H~~CF----------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 9 SASATCERCKGGFAPA-EKI-VNSNGELYHEQCF----------VCAQCFQQFPEG 52 (72)
T ss_dssp CTTCBCTTTCCBCCTT-CEE-EEETTEEEETTTS----------SCTTTCCCCGGG
T ss_pred cCCccchhcCccccCC-ceE-EEeCcCeeCcCCC----------cccCCCCCCCCC
Confidence 4456799999887643 222 2234677887764 788899988754
No 162
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.76 E-value=14 Score=19.21 Aligned_cols=14 Identities=36% Similarity=0.861 Sum_probs=11.0
Q ss_pred cCCCCCCcchhhhh
Q 024406 191 YCCPICSKSVIDMS 204 (268)
Q Consensus 191 ~~CPiCrksi~~m~ 204 (268)
|.|++|++++...+
T Consensus 3 ~~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 3 YVCERCGKRFVQSS 16 (26)
Confidence 78999999887543
No 163
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=26.71 E-value=86 Score=31.83 Aligned_cols=81 Identities=22% Similarity=0.601 Sum_probs=52.3
Q ss_pred cceeecCCCCCCCchhhhhhcc------cCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhhhHHHHHHH---
Q 024406 141 NHLCIENSMHHHCPICYEYLFD------SLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDMSRTWKRID--- 211 (268)
Q Consensus 141 ~H~C~e~~~~~~CpICle~lf~------s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m~~~~~~lD--- 211 (268)
+-+|-...-...||+|.-.+.+ ++....-|.||=-|...||+.+.+.+ |+-.+.-..|++.=
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~~---------~~~~~~~~~w~~~~~~~ 74 (776)
T 4gut_A 4 SRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSH---------KDGYDKYTTWKKIWTSN 74 (776)
T ss_dssp BSSBSSTTCCCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHSTT---------STTHHHHHHHHHHHHHT
T ss_pred ccccccCCCcccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhccC---------cchhHHHHHHHHHHHhC
Confidence 4566655566788888765533 22235669999999999999998764 33333334565422
Q ss_pred --------HHHHhcCCChhhhcCeeEEEcc--CCCC
Q 024406 212 --------EEIEATVMPEDYRHKKVWILCN--DCND 237 (268)
Q Consensus 212 --------~~i~~~pmP~~y~~~~v~I~Cn--DC~~ 237 (268)
.-|+++.+| -|..|. +|++
T Consensus 75 ~~~~~~~~~~~~~~~l~-------~~~~c~~~~c~~ 103 (776)
T 4gut_A 75 GKTEPSPKAFMADQQLP-------YWVQCTKPECRK 103 (776)
T ss_dssp CCSCCCHHHHHHHHTSC-------CEEECCCTTTCC
T ss_pred CccchhHHHHHHhccCc-------HhhhcCcccccc
Confidence 244555554 278899 9997
No 164
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=26.61 E-value=19 Score=27.64 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=26.2
Q ss_pred CCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
..|+.|.+.+......+..+ |..+|..| ++|-.|++.|.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~--~~~~H~~C----------F~C~~C~~~L~ 47 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVK--DKVYHLEC----------FKCAACQKHFS 47 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCS--SCCCCTTT----------CBCTTTCCBCC
T ss_pred CcccCCCCeecCCceEEEEC--Cccccccc----------CccccCCCCCC
Confidence 36888888776432222333 78889876 47888888884
No 165
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=26.26 E-value=21 Score=27.01 Aligned_cols=61 Identities=33% Similarity=0.603 Sum_probs=41.7
Q ss_pred CCCCCCchhhhhhcccCCcceEecc----CCccChHHHHHHHHcC---------CCcCCCCCCcchhhhhHHHHHHHHHH
Q 024406 148 SMHHHCPICYEYLFDSLRNTTVMKC----GHTMHCECYHEMIKRD---------NRYCCPICSKSVIDMSRTWKRIDEEI 214 (268)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpC----GH~~H~~C~~~~~~~~---------~~~~CPiCrksi~~m~~~~~~lD~~i 214 (268)
+.-..|.+|.|.|-+ .+...| +|-|.-.|-.+.++.. +..+|||=...+ -|..+..||
T Consensus 13 ~a~l~CtlC~erLEd----tHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~gS~~-----PWAFmqgEI 83 (93)
T 2cs3_A 13 SGPLCCTICHERLED----THFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNV-----PWAFMQGEI 83 (93)
T ss_dssp CCSCCCSSSCSCCSS----TTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSSSSS-----BCCCCHHHH
T ss_pred CCeeEeecchhhhcc----CceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCCCcC-----chHHHhhHH
Confidence 445789999998754 345556 7999999999998742 135666544332 477777777
Q ss_pred Hhc
Q 024406 215 EAT 217 (268)
Q Consensus 215 ~~~ 217 (268)
++.
T Consensus 84 atI 86 (93)
T 2cs3_A 84 ATI 86 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 166
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.11 E-value=34 Score=22.90 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=7.9
Q ss_pred cCCCCCCcchhhh
Q 024406 191 YCCPICSKSVIDM 203 (268)
Q Consensus 191 ~~CPiCrksi~~m 203 (268)
|.|++|.+.+...
T Consensus 16 ~~C~~C~k~f~~~ 28 (77)
T 2ct1_A 16 YECYICHARFTQS 28 (77)
T ss_dssp EECTTTCCEESCH
T ss_pred eECCCcCchhCCH
Confidence 5666666666543
No 167
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=25.88 E-value=26 Score=24.56 Aligned_cols=19 Identities=21% Similarity=0.551 Sum_probs=14.3
Q ss_pred ecCCCCccccccccCCcCCC
Q 024406 67 ICSVCDTEQPVAQVCTNCGV 86 (268)
Q Consensus 67 ~C~~C~~~q~v~~~C~~Cg~ 86 (268)
-|+.|+..++.. .|++||.
T Consensus 3 AC~~C~~v~~~~-~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLTNDE-ICPICHS 21 (59)
T ss_dssp EETTTCBEESSS-BCTTTCC
T ss_pred ccccCCcccCCC-CCCCCCC
Confidence 478888877665 6888886
No 168
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.84 E-value=24 Score=23.87 Aligned_cols=38 Identities=24% Similarity=0.589 Sum_probs=27.1
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
...|+.|.+.+.. +.+.. =|..+|..| ++|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~C----------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITY--QDQPWHADC----------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEE--TTEEECTTT----------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc--ceEEE--CccccccCc----------CEECCCCCCCC
Confidence 4578889888753 23333 478889876 47889999886
No 169
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.74 E-value=26 Score=19.28 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=12.7
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 7 ~~~C~~C~k~f~~~~~ 22 (35)
T 2elx_A 7 GYVCALCLKKFVSSIR 22 (35)
T ss_dssp SEECSSSCCEESSHHH
T ss_pred CeECCCCcchhCCHHH
Confidence 4899999999986443
No 170
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.17 E-value=30 Score=24.07 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=27.4
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
...|+.|.+.+.. + .+..=|..+|..| ++|-.|+++|.
T Consensus 15 ~~~C~~C~~~I~~--~--~v~a~~~~~H~~C----------F~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQ--G--GVTYRDQPWHREC----------LVCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCS--C--CEESSSSEECTTT----------CBCSSSCCBCT
T ss_pred CCcCCCCCCEecC--c--EEEECCchhhhhh----------CCcccCCCcCC
Confidence 4679999988754 2 2334478899876 57888999885
No 171
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.10 E-value=20 Score=24.36 Aligned_cols=40 Identities=25% Similarity=0.702 Sum_probs=27.2
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVIDM 203 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~m 203 (268)
...|+.|.+.+.+ +.+. .=|..+|..| ++|-.|+++|.+.
T Consensus 5 ~~~C~~C~~~I~~--~~~~--a~~~~~H~~C----------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIK--AMNNSWHPEC----------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS--CCEE--ETTEEECTTT----------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecc--eEEE--ECcccccccC----------CEeCCCCCcCCCC
Confidence 3568888887753 2233 3377888776 4788899888753
No 172
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.01 E-value=61 Score=19.20 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.4
Q ss_pred CcCCCCCCcchhhhhHH
Q 024406 190 RYCCPICSKSVIDMSRT 206 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~~ 206 (268)
.|.|++|.+++...+..
T Consensus 12 ~~~C~~C~k~f~~~~~L 28 (46)
T 2emz_A 12 PFKCNECGKGFGRRSHL 28 (46)
T ss_dssp SCCCSSSCCCCSSHHHH
T ss_pred CeECCCCCcccCCHHHH
Confidence 48999999999865543
No 173
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.79 E-value=29 Score=19.43 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=12.6
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+.+...+.
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (36)
T 2els_A 9 IFTCEYCNKVFKFKHS 24 (36)
T ss_dssp CEECTTTCCEESSHHH
T ss_pred CEECCCCCceeCCHHH
Confidence 4899999999875443
No 174
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=24.69 E-value=42 Score=22.96 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=6.1
Q ss_pred CCCCchhhhh
Q 024406 150 HHHCPICYEY 159 (268)
Q Consensus 150 ~~~CpICle~ 159 (268)
.-.|+.|...
T Consensus 52 ~W~C~~C~~~ 61 (66)
T 2yt5_A 52 KWLCRQCVFA 61 (66)
T ss_dssp CCCCHHHHHT
T ss_pred CEECCCCcCc
Confidence 4567777653
No 175
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=24.22 E-value=27 Score=24.50 Aligned_cols=30 Identities=23% Similarity=0.605 Sum_probs=22.7
Q ss_pred eEEEccCCCCccccceeEeeecCCCCCCccccccC
Q 024406 228 VWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIA 262 (268)
Q Consensus 228 v~I~CnDC~~~s~~~~H~lg~kC~~C~SyNT~~~~ 262 (268)
..+.|..||+. ...| +-|+.||.|+-+++-
T Consensus 29 ~l~~c~~cGe~--~~~H---~vc~~CG~Y~gr~V~ 58 (60)
T 3v2d_5 29 TLVPCPECKAM--KPPH---TVCPECGYYAGRKVL 58 (60)
T ss_dssp CCEECTTTCCE--ECTT---SCCTTTCEETTEECC
T ss_pred ceeECCCCCCe--ecce---EEcCCCCcCCCEEee
Confidence 46889999973 3345 459999999998764
No 176
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.01 E-value=16 Score=19.31 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.2
Q ss_pred cCCCCCCcchhhhh
Q 024406 191 YCCPICSKSVIDMS 204 (268)
Q Consensus 191 ~~CPiCrksi~~m~ 204 (268)
|.|++|.+++...+
T Consensus 3 ~~C~~C~k~f~~~~ 16 (29)
T 2lvt_A 3 CQCVMCGKAFTQAS 16 (29)
Confidence 78999999887543
No 177
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=24.15 E-value=21 Score=23.27 Aligned_cols=46 Identities=17% Similarity=0.561 Sum_probs=27.4
Q ss_pred CCchhhhhhcccCCcceE-eccCCccChHHHHHHHHcC--CCcCCCCCCcc
Q 024406 152 HCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKRD--NRYCCPICSKS 199 (268)
Q Consensus 152 ~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~~~~--~~~~CPiCrks 199 (268)
.|.||... -+. ..+.. -.|.-.||..|++.=+... +...||.|.++
T Consensus 2 ~C~vC~~~-~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC-CCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47777753 111 22222 2688999999997533221 24679998764
No 178
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=24.01 E-value=35 Score=22.67 Aligned_cols=13 Identities=46% Similarity=1.464 Sum_probs=9.4
Q ss_pred cceeecccccc-cc
Q 024406 88 MGEYFCDICKF-YD 100 (268)
Q Consensus 88 f~~y~C~~C~l-~d 100 (268)
|.+|-|.+|-+ ||
T Consensus 2 m~~y~C~vCGyvyd 15 (46)
T 6rxn_A 2 MQKYVCNVCGYEYD 15 (46)
T ss_dssp CCCEEETTTCCEEC
T ss_pred CCEEECCCCCeEEe
Confidence 66788888865 45
No 179
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.94 E-value=34 Score=24.67 Aligned_cols=7 Identities=57% Similarity=1.578 Sum_probs=3.8
Q ss_pred ecCCCCc
Q 024406 109 HCDDCGI 115 (268)
Q Consensus 109 HC~~Cgi 115 (268)
+|..||-
T Consensus 47 rCp~CG~ 53 (70)
T 1twf_L 47 RCKDCGH 53 (70)
T ss_dssp CCSSSCC
T ss_pred cCCCCCc
Confidence 5555553
No 180
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.85 E-value=41 Score=19.38 Aligned_cols=16 Identities=31% Similarity=0.767 Sum_probs=12.9
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 10 ~~~C~~C~k~f~~~~~ 25 (42)
T 2yte_A 10 PYSCAECKETFSDNNR 25 (42)
T ss_dssp SCBCTTTCCBCSSHHH
T ss_pred CeECCCCCCccCCHHH
Confidence 4899999999986543
No 181
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.76 E-value=30 Score=19.37 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=12.6
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (36)
T 2elv_A 9 LYDCHICERKFKNELD 24 (36)
T ss_dssp CEECSSSCCEESSHHH
T ss_pred CeECCCCCCccCCHHH
Confidence 4899999999986543
No 182
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=23.61 E-value=99 Score=20.77 Aligned_cols=22 Identities=36% Similarity=1.044 Sum_probs=13.4
Q ss_pred CCCCcccccCccceeecCccCccc
Q 024406 111 DDCGICRIGGRENYFHCKRCGSCY 134 (268)
Q Consensus 111 ~~CgiCR~G~~~~ffHC~~C~~C~ 134 (268)
+.|.+|+.|| +..-|+.|..-+
T Consensus 6 ~~C~vC~~~g--~ll~Cd~C~~~f 27 (60)
T 2puy_A 6 DFCSVCRKSG--QLLMCDTCSRVY 27 (60)
T ss_dssp SSCTTTCCCS--SCEECSSSSCEE
T ss_pred CCCcCCCCCC--cEEEcCCCCcCE
Confidence 3466666654 566777776543
No 183
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=23.53 E-value=49 Score=22.42 Aligned_cols=15 Identities=20% Similarity=0.605 Sum_probs=9.7
Q ss_pred CcCCCCCCcchhhhh
Q 024406 190 RYCCPICSKSVIDMS 204 (268)
Q Consensus 190 ~~~CPiCrksi~~m~ 204 (268)
.+.|++|.+.+...+
T Consensus 34 ~~~C~~C~~~f~~~~ 48 (90)
T 1a1h_A 34 PFQCRICMRNFSRSD 48 (90)
T ss_dssp CEECTTTCCEESCHH
T ss_pred CccCCCCCcccCCHH
Confidence 367777777776543
No 184
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.22 E-value=17 Score=19.16 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=11.7
Q ss_pred cCCCCCCcchhhhhH
Q 024406 191 YCCPICSKSVIDMSR 205 (268)
Q Consensus 191 ~~CPiCrksi~~m~~ 205 (268)
|.|++|.+++...+.
T Consensus 4 ~~C~~C~k~f~~~~~ 18 (30)
T 2lvr_A 4 YVCIHCQRQFADPGA 18 (30)
Confidence 789999998875443
No 185
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.31 E-value=24 Score=24.72 Aligned_cols=39 Identities=21% Similarity=0.600 Sum_probs=27.5
Q ss_pred CCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
...|+.|.+.+.. +.+. .=|..+|..| ++|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~--a~~~~wH~~C----------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEG--EVVS--ALGKTYHPDC----------FVCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCS--CCEE--ETTEEECTTT----------SSCSSSCCCCCS
T ss_pred CCcCccccCEecc--ceEE--ECCceeCccC----------CccccCCCCCCC
Confidence 3579999998763 2233 3478889776 478889988863
No 186
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=23.31 E-value=67 Score=27.78 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=46.6
Q ss_pred cccCccceeecCccCccccccccCcceeecCC---CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCC---
Q 024406 117 RIGGRENYFHCKRCGSCYSTSLRNNHLCIENS---MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNR--- 190 (268)
Q Consensus 117 R~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~---~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~--- 190 (268)
+.|++.....|.+|+.=-+.+.+...+=..+. ....|.-|.-.+ .+..+. ..=++++++.. .
T Consensus 68 ~~~~~~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~l--r~YGIT---------~eey~~L~e~Q-g~~~ 135 (200)
T 3gox_A 68 RTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNI--DGVKLS---------STEKKKMDEIA-PPKG 135 (200)
T ss_dssp GSSTTSSEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHH--HCSCCC---------HHHHHHHHTTC-CCTT
T ss_pred eccccCCCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhcc--CCcCCC---------HHHHHHHHHHc-ccCC
Confidence 78889999999999997776655443333233 567899997654 212111 11244445443 5
Q ss_pred --cCCCCCCcchh
Q 024406 191 --YCCPICSKSVI 201 (268)
Q Consensus 191 --~~CPiCrksi~ 201 (268)
.+||||++...
T Consensus 136 ~~G~C~ICg~~~~ 148 (200)
T 3gox_A 136 SVFTCPICEKRSI 148 (200)
T ss_dssp CEEECTTTCCEEE
T ss_pred CCCcCcCCCCCCC
Confidence 78999998776
No 187
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.09 E-value=32 Score=19.10 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.2
Q ss_pred CcCCCCCCcchhhhh
Q 024406 190 RYCCPICSKSVIDMS 204 (268)
Q Consensus 190 ~~~CPiCrksi~~m~ 204 (268)
.|.|++|.+.+...+
T Consensus 9 ~~~C~~C~k~f~~~~ 23 (36)
T 2elt_A 9 PYKCPQCSYASAIKA 23 (36)
T ss_dssp SEECSSSSCEESSHH
T ss_pred CCCCCCCCcccCCHH
Confidence 489999999987544
No 188
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=23.06 E-value=47 Score=21.23 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=6.1
Q ss_pred CcCeeecCCCC
Q 024406 104 EKGQFHCDDCG 114 (268)
Q Consensus 104 ~k~~yHC~~Cg 114 (268)
.|+-|.|.+||
T Consensus 25 ~~qg~~C~~C~ 35 (50)
T 1ptq_A 25 VKQGLKCEDCG 35 (50)
T ss_dssp SSCEEEETTTC
T ss_pred CCccCEeCCCC
Confidence 35556665555
No 189
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=22.88 E-value=31 Score=25.77 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=24.7
Q ss_pred ceeecCCCCccccc------cccCCcCCCccceeeccccccc
Q 024406 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (268)
Q Consensus 64 ~~v~C~~C~~~q~v------~~~C~~Cg~~f~~y~C~~C~l~ 99 (268)
-.|.|.-|..+|.| ...|..||..+++-.=.+-+|.
T Consensus 31 m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGGKA~l~ 72 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQSTIICEKCSAILCKPTGGKVQIQ 72 (81)
T ss_dssp EEEECSSSCCEEEEETTCSSCEECSSSCCEEEEECSSCEEEC
T ss_pred EEeECCCCCCeeEEEecCccEEEccCCCCEEeecCCCCeEec
Confidence 36788888888876 2468888888776654444443
No 190
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.82 E-value=40 Score=25.45 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=25.0
Q ss_pred eeecCCCCccccc------cccCCcCCCccceeeccccccc
Q 024406 65 QVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (268)
Q Consensus 65 ~v~C~~C~~~q~v------~~~C~~Cg~~f~~y~C~~C~l~ 99 (268)
.|.|..|..+|.| ...|..||..+++-.=.+-+|-
T Consensus 36 ~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~PTGGKa~l~ 76 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLT 76 (86)
T ss_dssp EEECTTTCCEEEEETTCSSCCCCSSSCCCCSCCCSSSCCCS
T ss_pred EEECCCCCCeeEEEecCCcEEEccCCCCEeecCCCCCEEec
Confidence 5888888888876 2478888888876655544443
No 191
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=22.63 E-value=44 Score=22.84 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=8.3
Q ss_pred cceeeccccccc
Q 024406 88 MGEYFCDICKFY 99 (268)
Q Consensus 88 f~~y~C~~C~l~ 99 (268)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (55)
T 2v3b_B 1 MRKWQCVVCGFI 12 (55)
T ss_dssp CCEEEETTTCCE
T ss_pred CCcEEeCCCCeE
Confidence 467888888543
No 192
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.59 E-value=34 Score=19.81 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=12.8
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 11 ~~~C~~C~k~f~~~~~ 26 (42)
T 2ytb_A 11 PYRCDQCGKAFSQKGS 26 (42)
T ss_dssp SBCCTTTTCCBSSHHH
T ss_pred CeeCCCccchhCCHHH
Confidence 4899999999986543
No 193
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.57 E-value=32 Score=19.19 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=12.7
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+.+...+.
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (36)
T 2elq_A 9 PFKCSLCEYATRSKSN 24 (36)
T ss_dssp SEECSSSSCEESCHHH
T ss_pred CccCCCCCchhCCHHH
Confidence 4899999999986543
No 194
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.41 E-value=53 Score=19.59 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=13.2
Q ss_pred CcCCCCCCcchhhhhHH
Q 024406 190 RYCCPICSKSVIDMSRT 206 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~~ 206 (268)
.|.|++|.|++...+..
T Consensus 12 ~~~C~~C~k~f~~~~~L 28 (46)
T 2ytm_A 12 PYKCMECGKAFGDNSSC 28 (46)
T ss_dssp SSSBTTTTBCCSSHHHH
T ss_pred CcCCCCCCchhCCHHHH
Confidence 48999999999865443
No 195
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.26 E-value=36 Score=23.77 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=29.3
Q ss_pred CCCCCchhhhhhcccCCcceEeccCCccChHHHHHHHHcCCCcCCCCCCcchhh
Q 024406 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDNRYCCPICSKSVID 202 (268)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~~CPiCrksi~~ 202 (268)
....|+.|.+.+.. + .+.-=|..+|..|| +|-.|++.|.+
T Consensus 14 ~~~~C~~C~~~I~~--~--~~~a~~~~~H~~CF----------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG--V--FVKLRDRHRHPECY----------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS--S--CEECSSCEECTTTT----------SCSSSCCCHHH
T ss_pred CCCccccCCCCccC--c--EEEECcceeCcCcC----------eeCCCCCCCCC
Confidence 35689999998764 2 23344789998775 78899998863
No 196
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=22.19 E-value=1.1e+02 Score=23.99 Aligned_cols=15 Identities=47% Similarity=0.789 Sum_probs=9.4
Q ss_pred cCCCC--CCcchhhhhH
Q 024406 191 YCCPI--CSKSVIDMSR 205 (268)
Q Consensus 191 ~~CPi--Crksi~~m~~ 205 (268)
|.||+ |.+++...+.
T Consensus 135 ~~C~~~~C~k~F~~~~~ 151 (190)
T 1tf6_A 135 YECPHEGCDKRFSLPSR 151 (190)
T ss_dssp SBCCSSSCCCBCSSHHH
T ss_pred ccCCCCCCCchhcCHHH
Confidence 67766 7777765433
No 197
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=22.15 E-value=66 Score=20.54 Aligned_cols=32 Identities=25% Similarity=0.795 Sum_probs=21.7
Q ss_pred cceeecCccCcccccccc--CcceeecCCCCCCCc
Q 024406 122 ENYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 154 (268)
Q Consensus 122 ~~ffHC~~C~~C~s~~l~--~~H~C~e~~~~~~Cp 154 (268)
.+.|.|.. +.|++..+. +.--|..++.+.+|+
T Consensus 10 ~~~f~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 10 KDQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp TTEEECTT-SCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CCceEcCC-CCEeChhhccCCCCCCCCCccccCCC
Confidence 35788887 889888765 555566666666665
No 198
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=22.07 E-value=28 Score=19.21 Aligned_cols=14 Identities=29% Similarity=0.930 Sum_probs=11.2
Q ss_pred CcCCCCCCcchhhh
Q 024406 190 RYCCPICSKSVIDM 203 (268)
Q Consensus 190 ~~~CPiCrksi~~m 203 (268)
.|.|++|.|++...
T Consensus 2 p~~C~~C~k~f~~~ 15 (32)
T 2kfq_A 2 AFACPACPKRFMRS 15 (32)
T ss_dssp CSSSSSSCTTHHHH
T ss_pred CCCCCCCCcccCCH
Confidence 38899999988743
No 199
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=21.81 E-value=31 Score=26.61 Aligned_cols=31 Identities=29% Similarity=0.767 Sum_probs=24.7
Q ss_pred cCeeEEEccCCCCccccceeEeeecCCCCC-------Cccc
Q 024406 225 HKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYNT 258 (268)
Q Consensus 225 ~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~-------SyNT 258 (268)
..+..++|.-||.. .||+--..|..|| +||=
T Consensus 12 ~~KtH~lCrRCG~~---sfH~qK~~CgkCGYpa~k~R~ynW 49 (97)
T 2zkr_2 12 RNKTHTLCRRCGSK---AYHLQKSTCGKCGYPAKRKRKYNW 49 (97)
T ss_dssp CCCCEECCTTTCSS---CEETTSCCBTTTCTTTSSCCCCSS
T ss_pred cCCCCCcCCCCCCc---cCcCccccCcccCCchHhccCcch
Confidence 34678999999986 4588888899998 7773
No 200
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.71 E-value=48 Score=19.31 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=12.9
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (44)
T 2en7_A 12 PYVCNECGKAFRSKSY 27 (44)
T ss_dssp SSCCTTTCCCCSSHHH
T ss_pred CeECCCCCCccCCHHH
Confidence 4899999999986543
No 201
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.62 E-value=47 Score=19.67 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=13.1
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.|++...+.
T Consensus 12 ~~~C~~C~k~F~~~~~ 27 (47)
T 2epx_A 12 PYECIECGKAFIQNTS 27 (47)
T ss_dssp SBCCSSSCCCBSSHHH
T ss_pred CEECCccCchhCChHH
Confidence 4899999999986544
No 202
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=21.28 E-value=36 Score=18.78 Aligned_cols=16 Identities=19% Similarity=0.602 Sum_probs=12.6
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+.+...+.
T Consensus 7 ~~~C~~C~k~f~~~~~ 22 (35)
T 1srk_A 7 PFVCRICLSAFTTKAN 22 (35)
T ss_dssp CEECSSSCCEESSHHH
T ss_pred CeeCCCCCcccCCHHH
Confidence 4899999999985443
No 203
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.21 E-value=42 Score=19.49 Aligned_cols=16 Identities=25% Similarity=0.656 Sum_probs=12.8
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 11 ~~~C~~C~k~f~~~~~ 26 (42)
T 2eos_A 11 PYPCEICGTRFRHLQT 26 (42)
T ss_dssp CBCCSSSCCCBSSHHH
T ss_pred CEECCCCCCccCCHHH
Confidence 4899999999986543
No 204
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.09 E-value=48 Score=19.67 Aligned_cols=16 Identities=44% Similarity=0.787 Sum_probs=13.1
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2eoq_A 12 PFKCDICGKSFCGRSR 27 (46)
T ss_dssp SCCCSSSCCCCSSHHH
T ss_pred CcCCCcCCchhCCHHH
Confidence 4899999999986544
No 205
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=20.86 E-value=53 Score=20.15 Aligned_cols=31 Identities=32% Similarity=0.679 Sum_probs=17.8
Q ss_pred ceeecCccCcccccccc--CcceeecCCCCCCCc
Q 024406 123 NYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 154 (268)
Q Consensus 123 ~ffHC~~C~~C~s~~l~--~~H~C~e~~~~~~Cp 154 (268)
+.|.|.. |.|++..+. +.--|..++.+.+||
T Consensus 5 ~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 5 FEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp TCEECTT-SCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CceEcCC-CCeechhhccCCCCCCCCCccccCCC
Confidence 4667765 678776653 334455555555554
No 206
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=20.75 E-value=38 Score=19.39 Aligned_cols=16 Identities=19% Similarity=0.659 Sum_probs=12.7
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 6 ~~~C~~C~k~f~~~~~ 21 (39)
T 1njq_A 6 SYTCSFCKREFRSAQA 21 (39)
T ss_dssp SEECTTTCCEESSHHH
T ss_pred ceECCCCCcccCCHHH
Confidence 4899999999986543
No 207
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.75 E-value=49 Score=19.60 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=12.9
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.|++...+.
T Consensus 12 ~~~C~~C~k~F~~~~~ 27 (46)
T 2enf_A 12 PYKCNECGKVFTQNSH 27 (46)
T ss_dssp SCBCSSSCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 4899999999986543
No 208
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=20.72 E-value=49 Score=19.68 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=13.6
Q ss_pred CcCCCCCCcchhhhhHH
Q 024406 190 RYCCPICSKSVIDMSRT 206 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~~ 206 (268)
.|.|++|.|++...+..
T Consensus 12 ~~~C~~C~k~F~~~~~L 28 (46)
T 2emk_A 12 PYECKECGKAFSQTTHL 28 (46)
T ss_dssp SCBCSSSCCBCSCHHHH
T ss_pred ceECCCCCchhCCHHHH
Confidence 48999999999865443
No 209
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.63 E-value=51 Score=19.45 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=12.8
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.|++...+.
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2ytr_A 12 PYKCNECGKAFSQTSK 27 (46)
T ss_dssp TTCCTTTCCCCSSHHH
T ss_pred CcCCCCCCCccCCHHH
Confidence 4899999999986543
No 210
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.59 E-value=21 Score=24.09 Aligned_cols=38 Identities=29% Similarity=0.632 Sum_probs=26.4
Q ss_pred CCchhhhhhcccCCcceEeccCCccC--hHHHHHHHHcCCCcCCCCCCcchh
Q 024406 152 HCPICYEYLFDSLRNTTVMKCGHTMH--CECYHEMIKRDNRYCCPICSKSVI 201 (268)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H--~~C~~~~~~~~~~~~CPiCrksi~ 201 (268)
.|+.|.+.+....+.+..+ |..+| ..| ++|-.|+++|.
T Consensus 4 ~C~~C~~~I~~~~~~v~a~--~~~wH~~~~C----------F~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYN--NFSWHASTEC----------FLCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEEET--TEEEETTTTT----------SBCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEEEC--CCccCCCCCC----------EECCCCCCcCC
Confidence 5788888776432333333 78889 776 47888998886
No 211
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.54 E-value=37 Score=19.01 Aligned_cols=16 Identities=38% Similarity=0.887 Sum_probs=12.7
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.+++...+.
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (37)
T 2elo_A 9 SYSCPVCEKSFSEDRL 24 (37)
T ss_dssp CCEETTTTEECSSHHH
T ss_pred CcCCCCCCCccCCHHH
Confidence 4899999999986543
No 212
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.48 E-value=52 Score=19.40 Aligned_cols=16 Identities=31% Similarity=0.301 Sum_probs=12.9
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.|++...+.
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2eop_A 12 PHECRECGKSFSFNSQ 27 (46)
T ss_dssp SCBCTTTCCBCSSHHH
T ss_pred CeeCCCCCchhCCHHH
Confidence 4899999999986543
No 213
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.48 E-value=52 Score=19.47 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=12.8
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.|.+...+.
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2emg_A 12 PFICSECGKVFTHKTN 27 (46)
T ss_dssp SCBCTTTCCBCSSHHH
T ss_pred CEECCccCcccCCHHH
Confidence 4899999999986543
No 214
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.33 E-value=50 Score=19.55 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=12.8
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.|++...+.
T Consensus 12 ~~~C~~C~k~F~~~~~ 27 (46)
T 2yti_A 12 PYKCNECGKVFTQNSH 27 (46)
T ss_dssp TTCCSSSCCCCSSHHH
T ss_pred CeECCCCCcccCChhH
Confidence 4899999999986543
No 215
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.13 E-value=50 Score=19.57 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=12.9
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.|++...+.
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2eq2_A 12 PYQCNECGKAFSQTSK 27 (46)
T ss_dssp SSSCCSSCCCCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 4899999999986543
No 216
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=20.11 E-value=48 Score=24.58 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=5.6
Q ss_pred ceeecCccCc
Q 024406 123 NYFHCKRCGS 132 (268)
Q Consensus 123 ~ffHC~~C~~ 132 (268)
-+|+|..|+.
T Consensus 60 ~~Y~C~~C~f 69 (89)
T 1v5n_A 60 WSYHCDECDF 69 (89)
T ss_dssp CEEECTTTCC
T ss_pred cEEEcCCCCC
Confidence 4566666653
No 217
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.10 E-value=44 Score=19.95 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=12.9
Q ss_pred CcCCCCCCcchhhhhH
Q 024406 190 RYCCPICSKSVIDMSR 205 (268)
Q Consensus 190 ~~~CPiCrksi~~m~~ 205 (268)
.|.|++|.|++...+.
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2eon_A 12 PYKCQVCGKAFRVSSH 27 (46)
T ss_dssp SCBCSSSCCBCSSHHH
T ss_pred ccCCCCCCcccCcHHH
Confidence 4899999999986543
No 218
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=20.06 E-value=27 Score=23.98 Aligned_cols=48 Identities=19% Similarity=0.599 Sum_probs=31.2
Q ss_pred CCCCCCCchhhhhhcccCCcceE-eccCCccChHHHHHHHHcC--CCcCCCCCCcc
Q 024406 147 NSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKRD--NRYCCPICSKS 199 (268)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~~~~--~~~~CPiCrks 199 (268)
...+..|.||.+. ..+.. -.|--.||..|+..-+... ....||.|.+.
T Consensus 8 ~~~~~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG-----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC-----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC-----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4456789999863 12222 2678899999998744221 25789998753
Done!