BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024407
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 153/268 (57%), Gaps = 13/268 (4%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
+TGSAD + KLW+V G + T+ P + V+F+ + D M+ +I++
Sbjct: 89 CVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYE 148
Query: 69 IARDPADQGGESVLILKGPQGRI---------NRAVWGPLNRTIISAGEDAIVRIWDTET 119
I RD A E + + P +I A W + II+ +D + +D
Sbjct: 149 IERDSATH--ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Query: 120 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 179
+ D H+K+I+ + + D ++F+T S D ++ L D TL+++K Y T+ P+N
Sbjct: 207 N--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNT 264
Query: 180 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239
++PL + ++LGGGQ+A VTTT GKFEA+F+ KI +EEIG V+GHFGP+N +A +
Sbjct: 265 AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS 324
Query: 240 PDGKSFSSGGEDGYVRLHHFDPDYFNIK 267
P G S++SGGEDG++RLHHF+ YF+ K
Sbjct: 325 PQGTSYASGGEDGFIRLHHFEKSYFDFK 352
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G + + + + + S +D+ +W + G+ L D GH TI S+
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD---GHTGTIWSIDVDC 84
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPL 185
+ +TGS D S KLWD + + T+ + PV V SP
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPC 126
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 114/258 (44%), Gaps = 37/258 (14%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFME 59
F + T+ + S D+T KLWN G L T S R V F+ G +A + D ++
Sbjct: 65 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 60 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 119
L ++ G+ + L G + + P +TI SA +D V++W+
Sbjct: 124 L-------------WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN 169
Query: 120 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVN 178
G+LL+ TGH ++ +A + DG + S DK+ KLW+ R +L++T V
Sbjct: 170 GQLLQT---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 225
Query: 179 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238
V SP D + D V + ++LQ + GH +N +AF
Sbjct: 226 GVAFSP--DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVNGVAF 270
Query: 239 NPDGKSFSSGGEDGYVRL 256
PDG++ +S +D V+L
Sbjct: 271 RPDGQTIASASDDKTVKL 288
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 114/258 (44%), Gaps = 37/258 (14%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFME 59
F + T+ + S D+T KLWN G L T S R V F+ G +A + D ++
Sbjct: 352 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410
Query: 60 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 119
L ++ G+ + L G + + P ++TI SA +D V++W+
Sbjct: 411 L-------------WNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RN 456
Query: 120 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVN 178
G+LL+ TGH ++ +A + DG + S DK+ KLW+ R +L++T V
Sbjct: 457 GQLLQT---LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 512
Query: 179 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238
V SP D + D V + ++LQ + GH + +AF
Sbjct: 513 GVAFSP--DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVWGVAF 557
Query: 239 NPDGKSFSSGGEDGYVRL 256
+PDG++ +S D V+L
Sbjct: 558 SPDGQTIASASSDKTVKL 575
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 37/258 (14%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFME 59
F+ + T+ + S D+T KLWN G L T S V F+ G +A + D ++
Sbjct: 270 FRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328
Query: 60 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 119
L ++ G+ + L G + + P +TI SA +D V++W+
Sbjct: 329 L-------------WNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN 374
Query: 120 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVN 178
G+LL+ TGH ++ +A + DG + S DK+ KLW+ R +L++T V
Sbjct: 375 GQLLQT---LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 430
Query: 179 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238
V SP D + + +D + K + ++LQ + GH + +AF
Sbjct: 431 GVAFSP----------DDQTIASASDDKTVKLWNR-NGQLLQT----LTGHSSSVRGVAF 475
Query: 239 NPDGKSFSSGGEDGYVRL 256
+PDG++ +S +D V+L
Sbjct: 476 SPDGQTIASASDDKTVKL 493
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 37/258 (14%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFME 59
F + T+ + S D+T KLWN G L T S V F+ G +A + D ++
Sbjct: 24 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 82
Query: 60 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 119
L ++ G+ + L G + + P +TI SA +D V++W+
Sbjct: 83 L-------------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 128
Query: 120 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVN 178
G+LL+ TGH ++ +A + DG + S DK+ KLW+ R +L++T V
Sbjct: 129 GQLLQT---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 184
Query: 179 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238
V SP D + D V + ++LQ + GH + +AF
Sbjct: 185 GVAFSP--DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVRGVAF 229
Query: 239 NPDGKSFSSGGEDGYVRL 256
+PDG++ +S +D V+L
Sbjct: 230 SPDGQTIASASDDKTVKL 247
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 37/258 (14%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFME 59
F + T+ + S D+T KLWN G L T S V F+ G +A + D ++
Sbjct: 147 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 205
Query: 60 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 119
L ++ G+ + L G + + P +TI SA +D V++W+
Sbjct: 206 L-------------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 251
Query: 120 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVN 178
G+LL+ TGH ++ +A DG + S DK+ KLW+ R +L++T V
Sbjct: 252 GQLLQT---LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 307
Query: 179 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238
V SP D + D V K +++ Q + + GH + +AF
Sbjct: 308 GVAFSP--DGQTIASASDDKTV------------KLWNRNGQ-HLQTLTGHSSSVWGVAF 352
Query: 239 NPDGKSFSSGGEDGYVRL 256
+PDG++ +S +D V+L
Sbjct: 353 SPDGQTIASASDDKTVKL 370
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 37/258 (14%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFME 59
F + T+ + S D+T KLWN G L T S V F+ G +A + D ++
Sbjct: 311 FSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 369
Query: 60 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 119
L ++ G+ + L G + + P +TI SA +D V++W+
Sbjct: 370 L-------------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 415
Query: 120 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVN 178
G+LL+ TGH ++ +A + D + S DK+ KLW+ R +L++T V
Sbjct: 416 GQLLQT---LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 471
Query: 179 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238
V SP D + D V + ++LQ + GH + +AF
Sbjct: 472 GVAFSP--DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVRGVAF 516
Query: 239 NPDGKSFSSGGEDGYVRL 256
+PDG++ +S +D V+L
Sbjct: 517 SPDGQTIASASDDKTVKL 534
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFME 59
F + T+ + S D+T KLWN G L T S R V F+ G +A + D ++
Sbjct: 434 FSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492
Query: 60 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 119
L ++ G+ + L G + + P +TI SA +D V++W+
Sbjct: 493 L-------------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 538
Query: 120 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161
G+LL+ TGH ++ +A + DG + S DK+ KLW+
Sbjct: 539 GQLLQT---LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 123 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVT 181
+KE ++ H ++ +A + DG + S DK+ KLW+ R +L++T V V
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 64
Query: 182 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241
SP D + D V + ++LQ + GH + +AF+PD
Sbjct: 65 FSP--DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVRGVAFSPD 109
Query: 242 GKSFSSGGEDGYVRL 256
G++ +S +D V+L
Sbjct: 110 GQTIASASDDKTVKL 124
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 117/286 (40%), Gaps = 55/286 (19%)
Query: 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVD-FAVGDKLAVITTDPFM 58
F + L TG+ D+ ++W++E + + S+D F GDKL + D
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD--- 186
Query: 59 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDT 117
R R + G+ L L G AV P + I+AG D VR+WD+
Sbjct: 187 ---------RTVRIWDLRTGQCSLTLSIEDGVTTVAV-SPGDGKYIAAGSLDRAVRVWDS 236
Query: 118 ETGKLLKESDKE----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR---------- 163
ETG L++ D E TGHK ++ S+ DG ++GSLD+S KLW+ +
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296
Query: 164 ----TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219
T E+ TY+ + + D +L G +D + F+DK
Sbjct: 297 PNSGTCEV--TYIGHKDFVLSVATTQNDEYILSGSKDRGVL-------------FWDKKS 341
Query: 220 QEEIGGVKGHFGPI------NALAFNPDGKSFSSGGEDGYVRLHHF 259
+ ++GH + N + P+ F++G D R+ +
Sbjct: 342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT 150
I + P + + + ED ++RIWD E K++ GH++ I SL G ++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGDKLVS 182
Query: 151 GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 210
GS D++ ++WD RT + T E V V +SP + G D + R
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV------RVWDS 236
Query: 211 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
E F + L E GH + ++ F DG+S SG D V+L
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 107/263 (40%), Gaps = 51/263 (19%)
Query: 3 QANSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELN 61
Q +I+GS D+T K+WN ETG + T + S R +
Sbjct: 166 QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH------------------- 206
Query: 62 SAIHVKRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 113
+H KR+ D + G+ + +L G + + R ++S D +V+
Sbjct: 207 --LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVK 262
Query: 114 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 173
+WD ET L GH + SL DG H ++GSLD S ++WD T I T
Sbjct: 263 VWDPETETCLHTLQ---GHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317
Query: 174 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233
+ + + L D++++ G D S V D + G+ + + G H +
Sbjct: 318 HQSLTS--GMELKDNILVSGNAD-STVKIWDIKTGQ---------CLQTLQGPNKHQSAV 365
Query: 234 NALAFNPDGKSFSSGGEDGYVRL 256
L FN + SS +DG V+L
Sbjct: 366 TCLQFNKNFVITSS--DDGTVKL 386
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 25/180 (13%)
Query: 83 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 142
+LKG + + NR I+S +D +++W TGK L+ GH + S ++
Sbjct: 113 VLKGHDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTL---VGHTGGVWS-SQM 167
Query: 143 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D ++GS D++ K+W+A T E I T + V L + V+ G +DA+
Sbjct: 168 RDNI-IISGSTDRTLKVWNAETGECIHTLYGH--TSTVRCMHLHEKRVVSGSRDAT---- 220
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262
+ +D + + + GH + + + DG+ SG D V++ +DP+
Sbjct: 221 ---------LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV--WDPE 267
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 21/128 (16%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
Q + + +++GS D + ++W+VETG + T S MEL
Sbjct: 285 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS----------------GMELK 328
Query: 62 SAIHVKRIARDPAD----QGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWD 116
I V A + G+ + L+GP + N+ +I++ +D V++WD
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 388
Query: 117 TETGKLLK 124
+TG+ ++
Sbjct: 389 LKTGEFIR 396
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 16/178 (8%)
Query: 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 139
S L+++ + A + + I S G D ++++ ETG+ L + H+ +
Sbjct: 614 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI---KAHEDEVLCC 670
Query: 140 AKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDAS 198
A ++D S+ T S DK K+WD+ T +L+ TY VN + +H++L G
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG---- 726
Query: 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ F K +D +E + GH +N F+PD + +S DG +RL
Sbjct: 727 --------SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162
++S D V++W+ TG++ ++ T H+ T+ S A ++D + F + S DK+AK+W
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDF---TCHQGTVLSCAISSDATKFSSTSADKTAKIW-- 1119
Query: 163 RTLELIKTYVTERPVN-AVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220
+ +L+ + N V S LD ++L G D + + G+ ++
Sbjct: 1120 -SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1178
Query: 221 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 255
E G H G + + F+PD K+ S G GY++
Sbjct: 1179 E---GTATHGGWVTDVCFSPDSKTLVSAG--GYLK 1208
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 123/287 (42%), Gaps = 53/287 (18%)
Query: 1 MFQANSMTLITGSADQTAKLWNVETGAQ------------LFTFNFDSPARSVDFAVGDK 48
MF + + +T S DQT ++W + + +F N ++ +VD G +
Sbjct: 896 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN-ETMVLAVDNIRGLQ 954
Query: 49 LAV-----ITTDPFMELNSAI---HVKRIARDPADQGGESVLILKGPQGRI-------NR 93
L I P +++ H++ +A D+ G ++ I++ P R+ +
Sbjct: 955 LIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF--GDEDG-AIKIIELPNNRVFSSGVGHKK 1011
Query: 94 AV----WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL 149
AV + +T+IS+ ED+++++W+ +TG + H++T+ D S L
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLLQD-SRLL 1066
Query: 150 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 209
+ S D + K+W+ T + + + + VL + A + A K
Sbjct: 1067 SWSFDGTVKVWNVITGRIERDFTCHQGT------------VLSCAISSDATKFSSTSADK 1114
Query: 210 FEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
AK + L + +KGH G + AF+ DG ++G ++G +R+
Sbjct: 1115 -TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1160
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 113/308 (36%), Gaps = 82/308 (26%)
Query: 2 FQANSMTLITGSADQTAKLWNVETG-------AQLFTFNFDSPARSVDFAV--------G 46
F + L + SAD T +LW+V + + F + + P V+ V G
Sbjct: 758 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 817
Query: 47 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 106
DK+ V + + + IH + + I G I + P + + A
Sbjct: 818 DKIIVAAKNKVLLFD--IHTSGLLAE----------IHTGHHSTIQYCDFSPYDHLAVIA 865
Query: 107 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA---- 162
V +W+ ++ LK +D GH + + + DGS FLT S D++ ++W+
Sbjct: 866 LSQYCVELWNIDSR--LKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 922
Query: 163 ----------------------------RTLELI--KT----YVTERPVNAVTMSPLLDH 188
R L+LI KT Y+ E V+ +SP L++
Sbjct: 923 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 982
Query: 189 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 248
V G A + + + F GV GH + + F DGK+ S
Sbjct: 983 VAFGDEDGAIKIIELPNN------RVFS-------SGV-GHKKAVRHIQFTADGKTLISS 1028
Query: 249 GEDGYVRL 256
ED +++
Sbjct: 1029 SEDSVIQV 1036
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 101/272 (37%), Gaps = 45/272 (16%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPF 57
F ++ + T SAD+ K+W+ TG + T++ S + LA + D F
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 58 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 117
++L D + + + G +N + P + + S D +R+WD
Sbjct: 732 LKL----------WDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 118 ETGK----------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167
+ L D + + + +ADG + + +K L+D T L
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGL 838
Query: 168 IKTYVT--ERPVNAVTMSPLLDHV-VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG 224
+ T + SP DH+ V+ Q + D R ++
Sbjct: 839 LAEIHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSRL--------------KVA 883
Query: 225 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+GH ++ + F+PDG SF + +D +R+
Sbjct: 884 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 915
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 67 KRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 118
+RIA AD + GE +L +K + + + + I + D V+IWD+
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 694
Query: 119 TGKLLKESDKETGHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKT-YVTER 175
TGKL+ D+ H + + +H L TGS D KLWD E T +
Sbjct: 695 TGKLVHTYDE---HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 751
Query: 176 PVNAVTMSP 184
VN SP
Sbjct: 752 SVNHCRFSP 760
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 15/169 (8%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F A+ TLI+ S D ++WN +TG +F + +L + D +++
Sbjct: 1018 FTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVW 1077
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
+ I RI RD QG + S D +IW +
Sbjct: 1078 NVI-TGRIERD-----------FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD--- 1122
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170
LL + GH + A + DG TG + ++W+ +L+ +
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 16/178 (8%)
Query: 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 139
S L+++ + A + + I S G D ++++ ETG+ L + H+ +
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI---KAHEDEVLCC 663
Query: 140 AKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDAS 198
A ++D S+ T S DK K+WD+ T +L+ TY VN + +H++L G
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG---- 719
Query: 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ F K +D +E + GH +N F+PD + +S DG +RL
Sbjct: 720 --------SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162
++S D V++W+ TG++ ++ T H+ T+ S A ++D + F + S DK+AK+W
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDF---TCHQGTVLSCAISSDATKFSSTSADKTAKIW-- 1112
Query: 163 RTLELIKTYVTERPVN-AVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220
+ +L+ + N V S LD ++L G D + + G+ ++
Sbjct: 1113 -SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171
Query: 221 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 255
E G H G + + F+PD K+ S G GY++
Sbjct: 1172 E---GTATHGGWVTDVCFSPDSKTLVSAG--GYLK 1201
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 123/287 (42%), Gaps = 53/287 (18%)
Query: 1 MFQANSMTLITGSADQTAKLWNVETGAQ------------LFTFNFDSPARSVDFAVGDK 48
MF + + +T S DQT ++W + + +F N ++ +VD G +
Sbjct: 889 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN-ETMVLAVDNIRGLQ 947
Query: 49 LAV-----ITTDPFMELNSAI---HVKRIARDPADQGGESVLILKGPQGRI-------NR 93
L I P +++ H++ +A D+ G ++ I++ P R+ +
Sbjct: 948 LIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF--GDEDG-AIKIIELPNNRVFSSGVGHKK 1004
Query: 94 AV----WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL 149
AV + +T+IS+ ED+++++W+ +TG + H++T+ D S L
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLLQD-SRLL 1059
Query: 150 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 209
+ S D + K+W+ T + + + + VL + A + A K
Sbjct: 1060 SWSFDGTVKVWNVITGRIERDFTCHQGT------------VLSCAISSDATKFSSTSADK 1107
Query: 210 FEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
AK + L + +KGH G + AF+ DG ++G ++G +R+
Sbjct: 1108 -TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 112/308 (36%), Gaps = 82/308 (26%)
Query: 2 FQANSMTLITGSADQTAKLWNVETG-------AQLFTFNFDSPARSVDFAV--------G 46
F + L + SAD T +LW+V + + F + + P V+ V G
Sbjct: 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810
Query: 47 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 106
DK+ V + + + IH G I G I + P + + A
Sbjct: 811 DKIIVAAKNKVLLFD--IHT----------SGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 858
Query: 107 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA---- 162
V +W+ ++ LK +D GH + + + DGS FLT S D++ ++W+
Sbjct: 859 LSQYCVELWNIDSR--LKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 915
Query: 163 ----------------------------RTLELI--KT----YVTERPVNAVTMSPLLDH 188
R L+LI KT Y+ E V+ +SP L++
Sbjct: 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 975
Query: 189 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 248
V G A + + + F GV GH + + F DGK+ S
Sbjct: 976 VAFGDEDGAIKIIELPNN------RVFS-------SGV-GHKKAVRHIQFTADGKTLISS 1021
Query: 249 GEDGYVRL 256
ED +++
Sbjct: 1022 SEDSVIQV 1029
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 101/272 (37%), Gaps = 45/272 (16%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPF 57
F ++ + T SAD+ K+W+ TG + T++ S + LA + D F
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 58 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 117
++L D + + + G +N + P + + S D +R+WD
Sbjct: 725 LKL----------WDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 118 ETGK----------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167
+ L D + + + +ADG + + +K L+D T L
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGL 831
Query: 168 IKTYVT--ERPVNAVTMSPLLDHV-VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG 224
+ T + SP DH+ V+ Q + D R ++
Sbjct: 832 LAEIHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSRL--------------KVA 876
Query: 225 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+GH ++ + F+PDG SF + +D +R+
Sbjct: 877 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 67 KRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 118
+RIA AD + GE +L +K + + + + I + D V+IWD+
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687
Query: 119 TGKLLKESDKETGHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKT-YVTER 175
TGKL+ D+ H + + +H L TGS D KLWD E T +
Sbjct: 688 TGKLVHTYDE---HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744
Query: 176 PVNAVTMSP 184
VN SP
Sbjct: 745 SVNHCRFSP 753
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 15/169 (8%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F A+ TLI+ S D ++WN +TG +F + +L + D +++
Sbjct: 1011 FTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVW 1070
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
+ I RI RD QG + S D +IW +
Sbjct: 1071 NVI-TGRIERD-----------FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD--- 1115
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170
LL + GH + A + DG TG + ++W+ +L+ +
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 29/259 (11%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMEL 60
F ++T +LWN ET ++ + ++P R+ F ++ +D F
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF--- 77
Query: 61 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 120
RI R GE V+ + I P ++S +D V++W+ E
Sbjct: 78 -------RI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 121 KLLKESDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPV 177
L+++ + GH+ + +A D S F +G LD++ K+W T T ER V
Sbjct: 130 WALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 178 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237
N V PL D + D + K +D + + ++GH ++
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTI------------KIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 238 FNPDGKSFSSGGEDGYVRL 256
F+P SG EDG +++
Sbjct: 236 FHPTLPIIISGSEDGTLKI 254
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 38/177 (21%)
Query: 9 LITGSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTD 55
+++GS D T KLWN E L FN P+ FA G
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASGC-------- 160
Query: 56 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVR 113
L+ + V + Q + + G + +N + PL +I+A +D ++
Sbjct: 161 ----LDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 114 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170
IWD +T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 212 IWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 8 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSA 63
T +G D+T K+W++ FT R V++ + DK +IT + +
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 123
+ Q V L+G ++ AV+ P IIS ED ++IW++ T K+
Sbjct: 214 DY----------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 124 K 124
K
Sbjct: 264 K 264
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 29/259 (11%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMEL 60
F ++T +LWN ET ++ + ++P R+ F ++ +D F
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF--- 77
Query: 61 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 120
RI R GE V+ + I P ++S +D V++W+ E
Sbjct: 78 -------RI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 121 KLLKESDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPV 177
L+++ + GH+ + +A D S F +G LD++ K+W T T ER V
Sbjct: 130 WALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 178 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237
N V PL D + D + K +D + + ++GH ++
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTI------------KIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 238 FNPDGKSFSSGGEDGYVRL 256
F+P SG EDG +++
Sbjct: 236 FHPTLPIIISGSEDGTLKI 254
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 38/177 (21%)
Query: 9 LITGSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTD 55
+++GS D T KLWN E L FN P+ FA G
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASGC-------- 160
Query: 56 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVR 113
L+ + V + Q + + G + +N + PL +I+A +D ++
Sbjct: 161 ----LDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 114 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170
IWD +T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 212 IWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 8 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSA 63
T +G D+T K+W++ FT R V++ + DK +IT + +
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 123
+ Q V L+G ++ AV+ P IIS ED ++IW++ T K+
Sbjct: 214 DY----------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 124 K 124
K
Sbjct: 264 K 264
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 29/243 (11%)
Query: 18 AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76
+LWN ET ++ + ++P R+ F ++ +D F RI R
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 136
GE V+ + I P ++S +D V++W+ E L+++ + GH+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 137 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 193
+A D S F +G LD++ K+W T T ER VN V PL D +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM-- 201
Query: 194 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY 253
+T +D K +D + + ++GH ++ F+P SG EDG
Sbjct: 202 ------ITASD----DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 254 VRL 256
+++
Sbjct: 252 LKI 254
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 8 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSA 63
T +G D+T K+W++ FT R V++ + DK +IT + +
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 123
+ Q V L+G ++ AV+ P IIS ED ++IW++ T K+
Sbjct: 214 DY----------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 124 K 124
K
Sbjct: 264 K 264
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 38/177 (21%)
Query: 9 LITGSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTD 55
+++GS D T KLWN E L FN P+ FA G
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASG--------- 159
Query: 56 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVR 113
L+ + V + Q + + G + +N + PL +I+A +D ++
Sbjct: 160 ---CLDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 114 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170
IWD +T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 212 IWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 29/243 (11%)
Query: 18 AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76
++WN ET ++ + ++P R+ F ++ +D F RI R
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 136
GE V+ + I P ++S +D V++W+ E L+++ + GH+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 137 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 193
+A D S F +G LD++ K+W T T ER VN V PL D +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM-- 201
Query: 194 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY 253
+T +D K +D + + ++GH ++ F+P SG EDG
Sbjct: 202 ------ITASD----DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 254 VRL 256
+++
Sbjct: 252 LKI 254
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 8 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSA 63
T +G D+T K+W++ FT R V++ + DK +IT + +
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 123
+ Q V L+G ++ AV+ P IIS ED ++IW++ T K+
Sbjct: 214 DY----------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 124 K 124
K
Sbjct: 264 K 264
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 38/177 (21%)
Query: 9 LITGSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTD 55
+++GS D T KLWN E L FN P+ FA G
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASGC-------- 160
Query: 56 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVR 113
L+ + V + Q + + G + +N + PL +I+A +D ++
Sbjct: 161 ----LDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 114 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170
IWD +T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 212 IWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 11/154 (7%)
Query: 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162
I+S G D +V++WD TG+L+ + GH +TS+ + DGS + D A+LWD
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTD---LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Query: 163 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 222
E + P+N + SP + A T R E K L E
Sbjct: 226 TKGEALSEMAAGAPINQICFSPNRYWMC--------AATEKGIRIFDLENKDIIVELAPE 277
Query: 223 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
G K ++A++ DG + SG D +R+
Sbjct: 278 HQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRV 311
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 19/156 (12%)
Query: 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163
+SA D +R+W+ + G+ K GH K + S+A + D ++G D + ++W+ +
Sbjct: 83 VSASWDHSLRLWNLQNGQCQY---KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Query: 164 --TLELIKTYVTERPVNAVTMSPLLDH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220
+ + V+ V SP LD V++ GG D + V D G+
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWD-NLVKVWDLATGRL---------- 188
Query: 221 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ +KGH + ++ +PDG +S +DG RL
Sbjct: 189 --VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
+++G D K+W++ TG + + + + +T P L ++
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHT----------NYVTSVTVSPDGSLCASSDKDG 218
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE-SD 127
+AR GE++ + IN+ + P NR + A + +RI+D E ++ E +
Sbjct: 219 VARLWDLTKGEALSEMAA-GAPINQICFSP-NRYWMCAATEKGIRIFDLENKDIIVELAP 276
Query: 128 KETGHKKTI---TSLAKAADGSHFLTGSLDKSAKLW 160
+ G KK + S+A +ADGS +G D ++W
Sbjct: 277 EHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G + + R ++ P+ ++SA EDA +++WD ETG + GH ++ ++
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK---GHTDSVQDISFDH 160
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKT-YVTERPVNAVTMSPLLDHVV 190
G + S D + KLWD + E I+T + + V++V++ P DH+V
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL 60
+F +++ S D T K+W+ ETG +F+ + +V D I+ D +L
Sbjct: 115 IFHPVFSVMVSASEDATIKVWDYETG------DFERTLKGHTDSVQD----ISFDHSGKL 164
Query: 61 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 120
++ + QG E + + G ++ P I+SA D +++W+ +TG
Sbjct: 165 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
Query: 121 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167
+K TGH++ + + DG+ + S D++ ++W T E
Sbjct: 225 YCVKTF---TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G ++ L G + ++ + I+S +D +R+WD + + +K + H+ +T
Sbjct: 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN---AHEHFVT 384
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDAR 163
SL + +TGS+D++ K+W+ R
Sbjct: 385 SLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 21/176 (11%)
Query: 9 LITGSADQTAKLWNVETGAQLFTF------------NFDSP--ARSVDFAVGDKLAVITT 54
+++ S D+T K+W V+TG + TF N D A + V T
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266
Query: 55 DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 114
+ EL HV + S+ G + + + GP ++S D +++
Sbjct: 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP-GPF---LLSGSRDKTIKM 322
Query: 115 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170
WD TG L GH + + + G L+ + DK+ ++WD + +KT
Sbjct: 323 WDVSTGMCLMTL---VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 37/193 (19%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFME 59
F + L + SAD T KLW+ + + T + D SV GD + + D ++
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 60 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 119
+ Q G V G + + I S D VR+W T
Sbjct: 218 MWEV------------QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 120 GKLLKESDKETGHKKTITSLAKAADGSH--------------------FLTGSLDKSAKL 159
+ E + H+ + ++ A + S+ L+GS DK+ K+
Sbjct: 266 KECKAELRE---HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 160 WDARTLELIKTYV 172
WD T + T V
Sbjct: 323 WDVSTGMCLMTLV 335
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 176 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235
PV V P+ V++ +DA+ + D+ G FE +KGH +
Sbjct: 110 PVTRVIFHPVFS-VMVSASEDAT-IKVWDYETGDFERT------------LKGHTDSVQD 155
Query: 236 LAFNPDGKSFSSGGEDGYVRLHHF 259
++F+ GK +S D ++L F
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDF 179
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 36/187 (19%)
Query: 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162
I++A D +WD E+G+LL +S G LA + G+ F++G DK A +WD
Sbjct: 169 ILTASGDGTCALWDVESGQLL-QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 163 RTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK------------ 209
R+ + ++ + T E VN+V P D G D + D RA +
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYPSGD--AFASGSDDATCRLYDLRADREVAIYSKESIIF 285
Query: 210 --------------------FEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 249
+ +D + + + GH ++ L +PDG +F SG
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345
Query: 250 EDGYVRL 256
D +R+
Sbjct: 346 WDHTLRV 352
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 8 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFA-VGDKLAVITTDPFMELNSAIH 65
T ++G D+ A +W++ +G + F +S SV + GD A + D L +
Sbjct: 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL----Y 267
Query: 66 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 125
R R+ A ES++ ++ ++ G R + + D + +WD G +
Sbjct: 268 DLRADREVAIYSKESIIF---GASSVDFSLSG---RLLFAGYNDYTINVWDVLKGSRVS- 320
Query: 126 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160
GH+ +++L + DG+ F +GS D + ++W
Sbjct: 321 --ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 23/158 (14%)
Query: 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163
+S D +R+WD TG + + GH K + S+A ++D ++GS DK+ KLW+
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-- 156
Query: 164 TLELIKTYVTERP----VNAVTMSPLLDH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKI 218
TL + K V + V+ V SP + +++ G D V + K +
Sbjct: 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD-KLVKVWNLANCKLKTNHI--- 212
Query: 219 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
GH G +N + +PDG +SGG+DG L
Sbjct: 213 ---------GHTGYLNTVTVSPDGSLCASGGKDGQAML 241
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 100/251 (39%), Gaps = 24/251 (9%)
Query: 10 ITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVK 67
++GS D T +LW++ TG F SV F+ ++ V + D ++L + + V
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 68 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 127
+ + P N I+S G D +V++W+ KL
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 128 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 187
TG+ T+T + DGS +G D A LWD + + T +NA+ SP +
Sbjct: 213 GHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP--N 267
Query: 188 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALAFNPDGKSF 245
L A T + E K L++E+ P +LA++ DG++
Sbjct: 268 RYWL------CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 321
Query: 246 SSGGEDGYVRL 256
+G D VR+
Sbjct: 322 FAGYTDNLVRV 332
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 41/199 (20%)
Query: 2 FQANSMTLITGSADQTAKLWNV----------ETGAQLFTFNFDSPARSVDFAVG---DK 48
F +++ +++GS D+T KLWN E+ ++ + SP S V DK
Sbjct: 136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 195
Query: 49 LAVITTDPFMELNS-----AIHVKRIARDP----ADQGGE--SVLILKGPQGR------- 90
L + +L + ++ + P GG+ ++ +G+
Sbjct: 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 91 ---INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET------GHKKTITSLAK 141
IN + P NR + A ++IWD E ++ E +E TSLA
Sbjct: 256 GDIINALCFSP-NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314
Query: 142 AADGSHFLTGSLDKSAKLW 160
+ADG G D ++W
Sbjct: 315 SADGQTLFAGYTDNLVRVW 333
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 11 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVK 67
+G D A LW++ G L+T + ++ F+ T P +L I V
Sbjct: 232 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVD 291
Query: 68 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 120
+ ++ ++ + PQ W +T+ + D +VR+W G
Sbjct: 292 ELKQEVISTSSKA----EPPQ--CTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 23/158 (14%)
Query: 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163
+S D +R+WD TG + + GH K + S+A ++D ++GS DK+ KLW+
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-- 133
Query: 164 TLELIKTYVTERP----VNAVTMSPLLDH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKI 218
TL + K V + V+ V SP + +++ G D V + K +
Sbjct: 134 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD-KLVKVWNLANCKLKTNHI--- 189
Query: 219 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
GH G +N + +PDG +SGG+DG L
Sbjct: 190 ---------GHTGYLNTVTVSPDGSLCASGGKDGQAML 218
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 100/251 (39%), Gaps = 24/251 (9%)
Query: 10 ITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVK 67
++GS D T +LW++ TG F SV F+ ++ V + D ++L + + V
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 68 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 127
+ + P N I+S G D +V++W+ KL
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 128 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 187
TG+ T+T + DGS +G D A LWD + + T +NA+ SP +
Sbjct: 190 GHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP--N 244
Query: 188 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALAFNPDGKSF 245
L A T + E K L++E+ P +LA++ DG++
Sbjct: 245 RYWL------CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 298
Query: 246 SSGGEDGYVRL 256
+G D VR+
Sbjct: 299 FAGYTDNLVRV 309
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 41/199 (20%)
Query: 2 FQANSMTLITGSADQTAKLWNV----------ETGAQLFTFNFDSPARSVDFAVG---DK 48
F +++ +++GS D+T KLWN E+ ++ + SP S V DK
Sbjct: 113 FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 172
Query: 49 LAVITTDPFMELNS-----AIHVKRIARDP----ADQGGE--SVLILKGPQGR------- 90
L + +L + ++ + P GG+ ++ +G+
Sbjct: 173 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 91 ---INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET------GHKKTITSLAK 141
IN + P NR + A ++IWD E ++ E +E TSLA
Sbjct: 233 GDIINALCFSP-NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 291
Query: 142 AADGSHFLTGSLDKSAKLW 160
+ADG G D ++W
Sbjct: 292 SADGQTLFAGYTDNLVRVW 310
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 11 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVK 67
+G D A LW++ G L+T + ++ F+ T P +L I V
Sbjct: 209 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVD 268
Query: 68 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 120
+ ++ ++ + PQ W +T+ + D +VR+W G
Sbjct: 269 ELKQEVISTSSKA----EPPQ--CTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 9/175 (5%)
Query: 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 141
++ +G Q + + W P + SA DA IW + E GH+ + S+A
Sbjct: 55 VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAW 113
Query: 142 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVT 201
A G+ T S DKS +W+ ++ Y +N+ T + HVV Q+ A
Sbjct: 114 APSGNLLATCSRDKSVWVWE---VDEEDEYECVSVLNSHTQD--VKHVVWHPSQELLASA 168
Query: 202 TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ D + + D + ++GH + +LAF+P G+ +S +D VR+
Sbjct: 169 SYDDTVKLYREEEDDWVC---CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 138
E V +L + VW P + SA D V+++ E + + E GH+ T+ S
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWS 199
Query: 139 LAKAADGSHFLTGSLDKSAKLW 160
LA G + S D++ ++W
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIW 221
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 67/227 (29%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK---------------------- 121
L+G G++ W P I+SA +D + +W+ T +
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 122 ---------------LLKESDKE---------TGHKKTITSLAKAADG-SHFLTGSLDKS 156
L ++D++ TGHK +S D + +TGS D++
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 157 AKLWDARTLELIKTYVTERP------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 210
LWD T + I + +E P V +++++ L ++ + G D +
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV----------- 230
Query: 211 EAKFFD-KILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ +D +I + GH G IN++ F PDG+ F +G +DG RL
Sbjct: 231 --RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 21/202 (10%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK- 67
LITGS DQT LW+V TG ++ F + P+ + + + + F+ + V+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 68 ---RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL- 123
RI +V G +G IN + P + + +D R++D TG L
Sbjct: 233 WDLRIT-------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Query: 124 ---KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 180
+E D+ +TS+A + G G + +WD E++ T + +
Sbjct: 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345
Query: 181 TMSPLLDHVVLGGGQDASAVTT 202
+S LG D SA+ T
Sbjct: 346 RIS------CLGLSSDGSALCT 361
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 111/301 (36%), Gaps = 58/301 (19%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAV-GDKLAVITTDPFMELNSAIHV 66
+++ S D +WN T + P FA G +A L+SA +
Sbjct: 81 IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC------GGLDSACSI 134
Query: 67 KRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLK 124
++ G V +L G +G + + P T +I+ D +WD TG+ +
Sbjct: 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS 194
Query: 125 --ESDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWDAR-TLELIKTYV-TERPVNA 179
S+ +GH + SL+ + + + F++GS D + +LWD R T ++TY E +N+
Sbjct: 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS 254
Query: 180 VTMSPLLDHVVLGGGQDASAVTTTDHRAG------------------------------- 208
V P D G G D D R G
Sbjct: 255 VKFFP--DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL 312
Query: 209 ------KFEAKFFDKILQEEIGGV----KGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 258
+ +D +L E + + H G I+ L + DG + +G D +++
Sbjct: 313 LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372
Query: 259 F 259
F
Sbjct: 373 F 373
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 97 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 214
+L+D R + + TY + + +T ++L G D F
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 215 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+D + + G + GH ++ L DG + ++G D ++++
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 94 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153
+ P + G D I I++ +T + +E S + D + +T S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 154 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 212
D + LWD T + T+ V +++++P + + G DASA D R G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262
F GH INA+ F P+G +F++G +D RL D
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 27/161 (16%)
Query: 9 LITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSA 63
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 123
+ + D G SV K R +++ +D +WD
Sbjct: 259 QELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDA------ 299
Query: 124 KESDKE---TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161
++D+ GH ++ L DG TGS D K+W+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 97 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 214
+L+D R + + TY + + +T ++L G D F
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 215 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+D + + G + GH ++ L DG + ++G D ++++
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 94 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153
+ P + G D I I++ +T + +E S + D + +T S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 154 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 212
D + LWD T + T+ V +++++P + + G DASA D R G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262
F GH INA+ F P+G +F++G +D RL D
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 27/161 (16%)
Query: 9 LITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSA 63
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 123
+ + D G SV K R +++ +D +WD
Sbjct: 259 QELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDA------ 299
Query: 124 KESDKE---TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161
++D+ GH ++ L DG TGS D K+W+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 97 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 214
+L+D R + + TY + + +T ++L G D F
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 215 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+D + + G + GH ++ L DG + ++G D ++++
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 94 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153
+ P + G D I I++ +T + +E S + D + +T S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 154 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 212
D + LWD T + T+ V +++++P + + G DASA D R G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262
F GH INA+ F P+G +F++G +D RL D
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 27/161 (16%)
Query: 9 LITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSA 63
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 123
+ + D G SV K R +++ +D +WD
Sbjct: 259 QELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDA------ 299
Query: 124 KESDKE---TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161
++D+ GH ++ L DG TGS D K+W+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 97 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 204 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 260
Query: 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 214
+L+D R + + TY + + +T ++L G D F
Sbjct: 261 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 307
Query: 215 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+D + + G + GH ++ L DG + ++G D ++++
Sbjct: 308 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 349
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 94 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153
+ P + G D I I++ +T + +E S + D + +T S
Sbjct: 114 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 154 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 212
D + LWD T + T+ V +++++P + + G DASA D R G
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 231
Query: 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262
F GH INA+ F P+G +F++G +D RL D
Sbjct: 232 TF------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 27/161 (16%)
Query: 9 LITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSA 63
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 210 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
Query: 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 123
+ + D G SV K R +++ +D +WD
Sbjct: 270 QELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDA------ 310
Query: 124 KESDKE---TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161
++D+ GH ++ L DG TGS D K+W+
Sbjct: 311 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 97 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 214
+L+D R + + TY + + +T ++L G D F
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 215 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+D + + G + GH ++ L DG + ++G D ++++
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 94 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153
+ P + G D I I++ +T + +E S + D + +T S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 154 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 212
D + LWD T + T+ V +++++P + + G DASA D R G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262
F GH INA+ F P+G +F++G +D RL D
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 27/161 (16%)
Query: 9 LITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSA 63
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 123
+ + D G SV K R +++ +D +WD
Sbjct: 259 QELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDA------ 299
Query: 124 KESDKE---TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161
++D+ GH ++ L DG TGS D K+W+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 156
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 78
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 136
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 137 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 155
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 156 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 185
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 186 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 156
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 78
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 136
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 137 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 155
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 156 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 185
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 186 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 114 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 170
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 171 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 219
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 92
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 150
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 151 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 132 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 169
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 170 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 199
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 200 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 251
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 156
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + ++ D +++IW GK K +GHK I+ +A ++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 78
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 136
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 137 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 155
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 156 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 185
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 186 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 103 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 159
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 81
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 139
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 140 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 158
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 159 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 188
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 189 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 153
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 75
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 133
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 134 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 152
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 153 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 182
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 183 CLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 139
S L+++ + A + + I S G D ++++ ETG+ L E H+ +
Sbjct: 613 SRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI---KAHEDEVLCC 669
Query: 140 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDAS 198
A + D T S+DK K+W++ T EL+ TY VN + H++L G
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC 729
Query: 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ K +D +E + GH +N F+PD K +S DG ++L
Sbjct: 730 FL------------KLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 100 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159
N ++S D V++W+ TG KE D H+ T+ S + D + F + S DK+AK+
Sbjct: 1061 NSRLLSWSFDGTVKVWNIITGN--KEKDF-VCHQGTVLSCDISHDATKFSSTSADKTAKI 1117
Query: 160 WDARTLELIKTYVTERPVNA-VTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 217
W + +L+ R N V S +D +L G D + + G E
Sbjct: 1118 W---SFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNG--ELLHLCA 1172
Query: 218 ILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 255
L EE G H G + L F+PDGK S G GY++
Sbjct: 1173 PLSEE--GAATHGGWVTDLCFSPDGKMLISAG--GYIK 1206
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 43/271 (15%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPF 57
F + + T S D+ K+WN TG + T++ S + LA ++D F
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF 730
Query: 58 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 117
++L E + G +N + P ++ + S D +++WD
Sbjct: 731 LKLWDL------------NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 118 ETGK----------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167
+ L D + + + + +ADG+ + + +K L+D T L
Sbjct: 779 TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGL 837
Query: 168 IKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225
+ T + SP V+ Q + TD R+ ++
Sbjct: 838 LGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRS--------------KVAD 883
Query: 226 VKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+GH ++ + F+PDG SF + +D +RL
Sbjct: 884 CRGHLSWVHGVMFSPDGSSFLTSSDDQTIRL 914
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 101 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160
+T+IS+ +DA +++W+ + K + GH++T+ + S L+ S D + K+W
Sbjct: 1022 KTLISSSDDAEIQVWNWQLDKCIFLR----GHQETVKDF-RLLKNSRLLSWSFDGTVKVW 1076
Query: 161 DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220
+ T K +V + +S + H DA+ ++T + AK + L
Sbjct: 1077 NIITGNKEKDFVCHQ---GTVLSCDISH-------DATKFSST---SADKTAKIWSFDLL 1123
Query: 221 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ ++GH G + AF+ D ++G ++G +R+
Sbjct: 1124 LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRI 1159
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 63/315 (20%), Positives = 112/315 (35%), Gaps = 84/315 (26%)
Query: 2 FQANSMTLITGSADQTAKLWNVETG-------AQLFTFNFDSPARSVDFAV--------G 46
F + L + SAD T KLW+ + + F N + P ++ V G
Sbjct: 757 FSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADG 816
Query: 47 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 106
++ V + + IH + GE I G I + P N + A
Sbjct: 817 ARIMVAAKNKIFLFD--IHTSGLL-------GE---IHTGHHSTIQYCDFSPQNHLAVVA 864
Query: 107 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA---- 162
V +W+T++ + + GH + + + DGS FLT S D++ +LW+
Sbjct: 865 LSQYCVELWNTDSRSKVADC---RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVC 921
Query: 163 ----------------------------RTLELIK------TYVTERPVNAVTMSPLLDH 188
R L+LI Y+TE V+ +SP L +
Sbjct: 922 KNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQY 981
Query: 189 VVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 247
+ G A + ++R F+++F H + + F D K+ S
Sbjct: 982 IAFGDENGAIEILELVNNRI--FQSRF-------------QHKKTVWHIQFTADEKTLIS 1026
Query: 248 GGEDGYVRLHHFDPD 262
+D +++ ++ D
Sbjct: 1027 SSDDAEIQVWNWQLD 1041
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 67 KRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 118
+RIA AD + GE +L +K + + + +R I + D V+IW++
Sbjct: 634 QRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSM 693
Query: 119 TGKLLKESDKETGHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKT-YVTER 175
TG+L+ D+ H + + H L TGS D KLWD E T +
Sbjct: 694 TGELVHTYDE---HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTN 750
Query: 176 PVNAVTMSP 184
VN SP
Sbjct: 751 SVNHCRFSP 759
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 84/208 (40%), Gaps = 39/208 (18%)
Query: 2 FQANSMTLITGSADQTAKLWNVE--------------------TGAQLFTFNFDSPARSV 41
F A+ TLI+ S D ++WN + ++L +++FD +
Sbjct: 1017 FTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVW 1076
Query: 42 DFAVGDKLA--VITTDPFMELNSAIHVKRIARDPADQGGE----SVLI----LKGPQGRI 91
+ G+K V + + + + + AD+ + +L+ L+G G +
Sbjct: 1077 NIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCV 1136
Query: 92 NRAVWGPLNRTIISAGED-AIVRIWDTETGKLLK-----ESDKETGHKKTITSLAKAADG 145
+ + ++ T+++ G+D +RIW+ G+LL + H +T L + DG
Sbjct: 1137 RCSAFS-VDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDG 1195
Query: 146 SHFLTGSLDKSAKLWDARTLELIKTYVT 173
++ K W+ T E +T+ T
Sbjct: 1196 KMLISAG--GYIKWWNVVTGESSQTFYT 1221
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 103 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 159
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 81
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 139
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 140 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 158
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 159 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 188
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 189 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 153
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 75
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 133
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 134 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 152
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 153 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 182
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 183 CLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 98 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 154
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 155 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 203
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 76
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 134
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 135 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 116 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 153
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 154 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 183
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 184 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 235
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 93 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 149
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 150 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 198
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 71
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 129
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 130 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 111 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 148
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 149 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 178
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 179 CLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 230
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 96 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 152
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 153 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 201
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 74
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 132
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 133 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 114 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 151
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 152 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 181
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 182 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 233
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 102 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 158
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 159 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 207
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 80
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 138
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 139 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 120 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 157
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 158 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 187
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 188 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 239
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 103 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 159
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 81
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 139
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 140 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 158
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 159 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 188
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 189 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 121 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 177
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 226
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 99
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 157
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 158 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 139 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 176
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 177 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 206
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 207 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TGK LK H ++
Sbjct: 119 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAHSDPVS 175
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 97
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 202
D + ++ S DK+ K+WD + + +KT V +P + +V G ++ V
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRI 155
Query: 203 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
D + GK + + H P++A+ FN DG S DG R+
Sbjct: 156 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 54/170 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV---- 174
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 175 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 204
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 171
LK + ++ + + +G + L +LD + KLWD + +KTY
Sbjct: 205 CLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TG LK H ++
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT---LPAHSDPVS 156
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 18/177 (10%)
Query: 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 140
+ L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVA 75
Query: 141 KAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASA 199
++D + ++ S DK+ K+WD + + +KT V +P + +V G ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 133
Query: 200 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
V D + G + + H P++A+ FN DG S DG R+
Sbjct: 134 VRIWDVKTGMC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKTL----PAHS--------------DPV---- 155
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 156 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 185
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD KLWD + +KTY +
Sbjct: 186 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHK 237
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + LKG + + P + I+S D VRIWD +TG LK H ++
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT---LPAHSDPVS 156
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 184
++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 140
+ L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVA 75
Query: 141 KAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASA 199
++D + ++ S DK+ K+WD + + +KT V +P + +V G ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 133
Query: 200 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ +D + + H P++A+ FN DG S DG R+
Sbjct: 134 ------------VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
F S +++GS D++ ++W+V+TG L T PA S DP
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKTL----PAHS--------------DPV---- 155
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121
SA+H R G + I+S+ D + RIWDT +G+
Sbjct: 156 SAVHFNR-------------------DGSL-----------IVSSSYDGLCRIWDTASGQ 185
Query: 122 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175
LK + ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 186 CLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163
+SA D +R+WD TG+ + + GHK + S+ S ++GS DK+ K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 164 TLELIKTYVTERPVNAVTMSPLL----DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219
L V+ V + P D V + + V + + EA F
Sbjct: 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---- 193
Query: 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259
GH IN L +PDG +S G+DG + L +
Sbjct: 194 --------GHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 10 ITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
++ S D+T +LW+V TG F S SVD + K ++I + + I V
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SRDKTIKVWT 135
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRIWDTETGKL 122
I G+ + L G +++ P + TIISAG D +V+ W+ ++
Sbjct: 136 IK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 123 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 182
E+D GH I +L + DG+ + D LW+ + + T + V ++
Sbjct: 189 --EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Query: 183 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPD 241
SP + L +A T T + + ++ L+ E G P +LA++ D
Sbjct: 246 SP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 242 GKSFSSGGEDGYVRL 256
G++ +G D +R+
Sbjct: 298 GQTLFAGYTDNVIRV 312
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163
+SA D +R+WD TG+ + + GHK + S+ S ++GS DK+ K+W +
Sbjct: 75 LSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 131
Query: 164 TLELIKTYVTERPVNAVTMSPLL----DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219
L V+ V + P D V + + V + + EA F
Sbjct: 132 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---- 187
Query: 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259
GH IN L +PDG +S G+DG + L +
Sbjct: 188 --------GHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 10 ITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
++ S D+T +LW+V TG F S SVD + K ++I + + I V
Sbjct: 75 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SRDKTIKVWT 129
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRIWDTETGKL 122
I G+ + L G +++ P + TIISAG D +V+ W+ ++
Sbjct: 130 IK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 182
Query: 123 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 182
E+D GH I +L + DG+ + D LW+ + + T + V ++
Sbjct: 183 --EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 239
Query: 183 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPD 241
SP + L +A T T + + ++ L+ E G P +LA++ D
Sbjct: 240 SP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 291
Query: 242 GKSFSSGGEDGYVRL 256
G++ +G D +R+
Sbjct: 292 GQTLFAGYTDNVIRV 306
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163
+SA D +R+WD TG+ + + GHK + S+ S ++GS DK+ K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQ---RFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK 137
Query: 164 TLELIKTYVTERPVNAVTMSPLL----DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219
L V+ V + P D V + + V + + EA F
Sbjct: 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFI---- 193
Query: 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259
GH IN L +PDG +S G+DG + L +
Sbjct: 194 --------GHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 31/255 (12%)
Query: 10 ITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
++ S D+T +LW+V TG F S SVD + K + I + + I V
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVD--IDKKASXIISG---SRDKTIKVWT 135
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRIWDTETGKL 122
I G+ + L G +++ P + TIISAG D V+ W+ ++
Sbjct: 136 IK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI 188
Query: 123 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 182
E+D GH I +L + DG+ + D LW+ + T + V ++
Sbjct: 189 --EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAF 245
Query: 183 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPD 241
SP + L +A T T + + ++ L+ E G P +LA++ D
Sbjct: 246 SP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 242 GKSFSSGGEDGYVRL 256
G++ +G D +R+
Sbjct: 298 GQTLFAGYTDNVIRV 312
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163
+SA D +R+WD TG+ + + GHK + S+ S ++GS DK+ K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 164 TLELIKTYVTERPVNAVTMSPLL----DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219
L V+ V + P D V + + V + + EA F
Sbjct: 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---- 193
Query: 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259
GH IN L +PDG +S G+DG + L +
Sbjct: 194 --------GHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 10 ITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
++ S D+T +LW+V TG F S SVD + K ++I + + I V
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SRDKTIKVWT 135
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRIWDTETGKL 122
I G+ + L G +++ P + TIISAG D +V+ W+ ++
Sbjct: 136 IK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 123 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 182
E+D GH I +L + DG+ + D LW+ + + T + V ++
Sbjct: 189 --EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Query: 183 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPD 241
SP + L +A T T + + ++ L+ E G P +LA++ D
Sbjct: 246 SP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 242 GKSFSSGGEDGYVRL 256
G++ +G D +R+
Sbjct: 298 GQTLFAGYTDNVIRV 312
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163
+SA D +R+WD TG+ + + GHK + S+ S ++GS DK+ K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 164 TLELIKTYVTERPVNAVTMSPLL----DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219
L V+ V + P D V + + V + + EA F
Sbjct: 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---- 193
Query: 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259
GH IN L +PDG +S G+DG + L +
Sbjct: 194 --------GHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 10 ITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
++ S D+T +LW+V TG F S SVD + K ++I + + I V
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SRDKTIKVWT 135
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRIWDTETGKL 122
I G+ + L G +++ P + TIISAG D +V+ W+ ++
Sbjct: 136 IK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 123 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 182
E+D GH I +L + DG+ + D LW+ + + T + V ++
Sbjct: 189 --EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Query: 183 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPD 241
SP + L +A T T + + ++ L+ E G P +LA++ D
Sbjct: 246 SP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSAD 297
Query: 242 GKSFSSGGEDGYVRL 256
G++ +G D +R+
Sbjct: 298 GQTLFAGYTDNVIRV 312
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163
+SA D +R+WD TG+ + + GHK + S+ S ++GS DK+ K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 164 TLELIKTYVTERPVNAVTMSPLL----DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219
L V+ V + P D V + + V + + EA F
Sbjct: 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---- 193
Query: 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259
GH IN L +PDG +S G+DG + L +
Sbjct: 194 --------GHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 10 ITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
++ S D+T +LW+V TG F S SVD + K ++I + + I V
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SRDKTIKVWT 135
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRIWDTETGKL 122
I G+ + L G +++ P + TIISAG D +V+ W+ ++
Sbjct: 136 IK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 123 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 182
E+D GH I +L + DG+ + D LW+ + + T + V ++
Sbjct: 189 --EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Query: 183 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPD 241
SP + L +A T T + + ++ L+ E G P +LA++ D
Sbjct: 246 SP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 242 GKSFSSGGEDGYVRL 256
G++ +G D +R+
Sbjct: 298 GQTLFAGYTDNVIRV 312
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL 60
Q + +ITGS+D T ++W+V TG L T A + + + V +
Sbjct: 178 CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA-VLHLRFNNGMMVTCSK----- 231
Query: 61 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 120
+ +I V +A P D VL+ G + +N + ++ I+SA D +++W+T T
Sbjct: 232 DRSIAVWDMA-SPTDITLRRVLV--GHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTC 286
Query: 121 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161
+ ++ + GHK+ I L ++GS D + +LWD
Sbjct: 287 EFVRTLN---GHKRGIACLQYR--DRLVVSGSSDNTIRLWD 322
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 100 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159
++ I+S D ++IWD T L+ TGH ++ L D +TGS D + ++
Sbjct: 143 DQKIVSGLRDNTIKIWDKNT---LECKRILTGHTGSVLCLQ--YDERVIITGSSDSTVRV 197
Query: 160 WDARTLELIKTYV 172
WD T E++ T +
Sbjct: 198 WDVNTGEMLNTLI 210
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFME 59
Q +++GS+D T +LW++E GA L + R + F D +++
Sbjct: 301 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSG----A 353
Query: 60 LNSAIHVKRI--ARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 116
+ I V + A DP G L L GR+ R + I+S+ D + IWD
Sbjct: 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 411
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163
+S D +R+WD G + + GH K + S+A + D ++ S D++ KLW+
Sbjct: 446 LSGSWDGELRLWDLAAGV---STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-- 500
Query: 164 TLELIKTYVTE------RPVNAVTMSP-LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD 216
TL K ++E V+ V SP L ++ D + V + K +
Sbjct: 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT-VKVWNLSNCKLRST--- 556
Query: 217 KILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ GH G ++ +A +PDG +SGG+DG V L
Sbjct: 557 ---------LAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 16/179 (8%)
Query: 10 ITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVK 67
++GS D +LW++ G F SV F++ ++ V + D ++L + +
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505
Query: 68 RIARDPADQGGESVLILKGPQGRINRAVWGP--LNRTIISAGEDAIVRIWDTETGKLLKE 125
+ +GGE G + ++ + P L TI+SA D V++W+ KL
Sbjct: 506 KYT---ISEGGE------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--- 553
Query: 126 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 184
GH ++++A + DGS +G D LWD + + + ++A+ SP
Sbjct: 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP 612
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 16/171 (9%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM--- 58
F ++ +++ S D+T KLWN G +T + D+ + + T P +
Sbjct: 480 FSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHR-DWVSCVRFSPNTLQPTIVSA 537
Query: 59 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 118
+ + V ++ L G G ++ P S G+D +V +WD
Sbjct: 538 SWDKTVKVWNLSNCKLRS------TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591
Query: 119 TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 169
GK L + + I +L + + ++L + + K+WD + +++
Sbjct: 592 EGKKLYSLEANS----VIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVE 637
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 105/259 (40%), Gaps = 19/259 (7%)
Query: 10 ITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL---NSAIH 65
I+ S D+T +LW++ TG F S SV F+ D +++ E+ N
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILGE 150
Query: 66 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 125
K + + + + P + V P S G D +++W+T ++
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKV-QPFAPYFASVGWDGRLKVWNTNFQ--IRY 207
Query: 126 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTYVTERPVNAVTMSP 184
+ K H+ + L+ + +G + TG DK +WD L + + +N + +P
Sbjct: 208 TFK--AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP 265
Query: 185 LLDHVVLGGGQDA---SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241
L V +G Q + +T + EA + I + E G KG +LA+N
Sbjct: 266 KLQWVAVGTDQGVKIFNLMTQSKAPVCTIEA---EPITKAE--GQKGKNPQCTSLAWNAL 320
Query: 242 GKSFSSGGEDGYVRLHHFD 260
GK +G DG +R F+
Sbjct: 321 GKKLFAGFTDGVIRTFSFE 339
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 103 IISAGEDAIVRIW----DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158
+IS D V IW + + G TGH ++ LA + + ++ S DK+ +
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 159 LWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQ 195
LWD RT K +V + V +V SP ++ G +
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAE 139
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 67
L++GS D+T ++W+++ G F +S R +D + I T ++ +HV
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG---SRDNTLHVW 232
Query: 68 RIARDPA--DQGGES---------------VLILKGPQGRINRAVWGPLNRTIISAGEDA 110
++ ++ + D G E V +L+G + R V G N ++S D
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-RTVSGHGN-IVVSGSYDN 290
Query: 111 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170
+ +WD K L +GH I S + ++ S+D + ++WD EL+ T
Sbjct: 291 TLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 138
+ + IL G RI ++ + ISA D +RIWD E G+L+ T +
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA----LVG 356
Query: 139 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS 198
L + +D ++ + D S + WDA +Y ++A+T + D++++ G ++
Sbjct: 357 LLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGSENQF 414
Query: 199 AVTTTDHRAGKF 210
+ R+GK
Sbjct: 415 NIYNL--RSGKL 424
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162
+I+ +D ++R++D+ K L + +GH + +L K A G ++GS D++ ++WD
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQL---SGHDGGVWAL-KYAHGGILVSGSTDRTVRVWDI 190
Query: 163 R 163
+
Sbjct: 191 K 191
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 98/259 (37%), Gaps = 38/259 (14%)
Query: 11 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDK---LAVITTDPFMELNSAIHV 66
+ S D+T K+W+ T FNF+ S + V K +AV T P ++L
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL--- 173
Query: 67 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE--TGKLL 123
+ G IL+G + I W P I+ +A D+ V++WD +G L+
Sbjct: 174 ---------KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI 224
Query: 124 -------KESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 172
K+S T H + L +DG H LT D +LW++ E T V
Sbjct: 225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE--NTLV 282
Query: 173 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232
V + L V G + V A + E+I +KGH+
Sbjct: 283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIA------VYTVYSGEQITMLKGHYKT 336
Query: 233 INALAFNPDGKSFSSGGED 251
++ F + + SG D
Sbjct: 337 VDCCVFQSNFQELYSGSRD 355
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 40/195 (20%)
Query: 58 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 117
+ELN V+RI GG + L ++ +GR ++S G D ++ ++D
Sbjct: 30 LELNKDRDVERI-----HGGGINTLDIEPVEGRY-----------MLSGGSDGVIVLYDL 73
Query: 118 E--------TGKLLKE--SDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWDARTLE 166
E T K + D H+ ++ ++ D F + S DK+ K+WD TL+
Sbjct: 74 ENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ 133
Query: 167 LIKTYVTERPVNAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225
+ E V + MSP+ H ++ G V D ++G ILQ
Sbjct: 134 TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-----HILQ----- 183
Query: 226 VKGHFGPINALAFNP 240
GH I A++++P
Sbjct: 184 --GHRQEILAVSWSP 196
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 40/192 (20%)
Query: 100 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL----TGSLDK 155
+ T+++ D +V++W +L + E GH+ + S+ D SH L + SLD
Sbjct: 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLE-GHQLGVVSV----DISHTLPIAASSSLDA 102
Query: 156 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE---- 211
+LWD + IK+ + PV+A T++ D L G V +GK E
Sbjct: 103 HIRLWDLENGKQIKS-IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 212 --AKF------------------------FDKILQEEIGGVKGHFGPINALAFNPDGKSF 245
KF FD + + ++GH PI +L F+PD +
Sbjct: 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL 221
Query: 246 SSGGEDGYVRLH 257
+ +DGY++++
Sbjct: 222 VTASDDGYIKIY 233
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 15/161 (9%)
Query: 11 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA 70
+ S D +LW++E G Q+ +S+D D + + L + HV ++
Sbjct: 97 SSSLDAHIRLWDLENGKQI---------KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVN 147
Query: 71 RDPADQGG-ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE 129
+ G E L +G I + P + + S D I+ I+D TGKLL +
Sbjct: 148 IFGVESGKKEYSLDTRGK--FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-- 203
Query: 130 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170
GH I SL + D +T S D K++D + L T
Sbjct: 204 -GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT 243
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
G+ + L+G I + P ++ +++A +D ++I+D + L + +GH +
Sbjct: 196 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL---AGTLSGHASWVL 252
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 171
++A D +HF++ S DKS K+WD T + T+
Sbjct: 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 42/176 (23%)
Query: 118 ETGKLLKESDKETGHKKTITSLA----KAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 173
+ G L K+ E H I S+A K + +TGSLD K+W R L +
Sbjct: 20 QYGILFKQ---EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL 76
Query: 174 E-RPVNAVTM-----------SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE 221
E + V++ S L H+ L ++ + + D AG +A
Sbjct: 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID--AGPVDAWTLAFSPDS 134
Query: 222 EIGGVKGHFGPIN---------------------ALAFNPDGKSFSSGGEDGYVRL 256
+ H G +N ++A++PDGK +SG DG + +
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINI 190
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 79 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
E V+ L+G R+ W P + ++ SAG D ++ +WD TG + + H TI
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 183
S+ + DG+ T DK ++ + R ++ + + RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 62 SAIHVKRIARDPADQGGESVLILK-GPQGRINRAV--------------WGPLNRTIISA 106
A++ K +A GG + L+L G GR+++ V W P N +I++
Sbjct: 40 CAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIAS 99
Query: 107 G-EDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSH-FLTGSLDKSAKLW 160
G ED V +W+ G L+ + GH K + +A + L+ D +W
Sbjct: 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVW 159
Query: 161 DART 164
D T
Sbjct: 160 DVGT 163
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 79 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 137
E V+ L+G R+ W P + ++ SAG D ++ +WD TG + + H TI
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 183
S+ + DG+ T DK ++ + R ++ + + RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 62 SAIHVKRIARDPADQGGESVLILK-GPQGRINRAV--------------WGPLNRTIISA 106
A++ K +A GG + L+L G GR+++ V W P N +I++
Sbjct: 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIAS 99
Query: 107 G-EDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSH-FLTGSLDKSAKLW 160
G ED V +W+ G L+ + GH K + +A + L+ D +W
Sbjct: 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159
Query: 161 DART 164
D T
Sbjct: 160 DVGT 163
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 28/208 (13%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 67
L++GS D+T ++W+++ G F +S R +D + I T ++ +HV
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG---SRDNTLHVW 232
Query: 68 RIARDPA--DQGGES---------------VLILKGPQGRINRAVWGPLNRTIISAGEDA 110
++ ++ + D G E V +L+G + R V G N ++S D
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV-RTVSGHGN-IVVSGSYDN 290
Query: 111 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170
+ +WD K L +GH I S + ++ S D + ++WD EL
Sbjct: 291 TLIVWDVAQXKCLY---ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL--X 345
Query: 171 YVTERPVNAVTMSPLLDHVVLGGGQDAS 198
Y + V + L D ++ D S
Sbjct: 346 YTLQGHTALVGLLRLSDKFLVSAAADGS 373
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 138
+ + IL G RI ++ + ISA D +RIWD E G+L T +
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTA----LVG 356
Query: 139 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS 198
L + +D ++ + D S + WDA +Y ++A+T + D++++ G ++
Sbjct: 357 LLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGSENQF 414
Query: 199 AVTTTDHRAGKF 210
+ R+GK
Sbjct: 415 NIYNL--RSGKL 424
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162
+I+ +D +R++D+ K L + +GH + +L K A G ++GS D++ ++WD
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQL---SGHDGGVWAL-KYAHGGILVSGSTDRTVRVWDI 190
Query: 163 R 163
+
Sbjct: 191 K 191
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 78 GESVLILKGPQGRINRAVWGPLNRT--------------IISAGEDAIVRIWDT-ETGKL 122
G S+ + K P+G N ++ +T I+ A + V +W+ E L
Sbjct: 69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESL 128
Query: 123 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVT 181
L + H + +L+ +DG+ ++G D S K+WD ++K+Y VN V
Sbjct: 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188
Query: 182 MSPLLDHVVLGGGQD 196
P D + L G+D
Sbjct: 189 ACPGKDTIFLSCGED 203
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 83 ILKGPQGR----INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 138
IL P+ R +N W N +++ D V +W +G +L+ E + I+S
Sbjct: 16 ILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQP-GEYISS 72
Query: 139 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS 198
+A +G++ G+ +LWD + + ++ + +A S + +L G +
Sbjct: 73 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH---SARVGSLSWNSYILSSGSRSG 129
Query: 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ D R + + + + GH + L + PDG+ +SGG D V +
Sbjct: 130 HIHHHDVR-----------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/252 (18%), Positives = 94/252 (37%), Gaps = 27/252 (10%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
L G++ +LW+V+ +L S ++ ++ + ++ L+S
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGH 130
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESD 127
I V L G + W P R + S G D +V +W + G+
Sbjct: 131 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 190
Query: 128 KETGHKKTITSLAKAADGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 184
T H+ + ++A S+ L G+ D+ ++W+ + + V ++ SP
Sbjct: 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 250
Query: 185 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244
++ G H + + + ++ +KGH + +L +PDG +
Sbjct: 251 HYKELISG------------HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 298
Query: 245 FSSGGEDGYVRL 256
+S D +RL
Sbjct: 299 VASAAADETLRL 310
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
+Q+N + G++D+ ++WNV +GA L + S S+ ++ K +I+ F + N
Sbjct: 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGFAQ-N 264
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 115
+ I + P V LKG R+ P T+ SA D +R+W
Sbjct: 265 QLV----IWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 45/138 (32%)
Query: 73 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKE 129
P + G + QG + W P +++ G D +RIW+ +G L D
Sbjct: 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 130 T----------------------------------------GHKKTITSLAKAADGSHFL 149
+ GH + SL + DG+
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 150 TGSLDKSAKLWDARTLEL 167
+ + D++ +LW R EL
Sbjct: 301 SAAADETLRLW--RCFEL 316
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 83 ILKGPQGR----INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 138
IL P+ R +N W N +++ D V +W +G +L+ E + I+S
Sbjct: 96 ILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQP-GEYISS 152
Query: 139 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS 198
+A +G++ G+ +LWD + + ++ + +A S + +L G +
Sbjct: 153 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH---SARVGSLSWNSYILSSGSRSG 209
Query: 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ D R + + + + GH + L + PDG+ +SGG D V +
Sbjct: 210 HIHHHDVR-----------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/252 (18%), Positives = 94/252 (37%), Gaps = 27/252 (10%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
L G++ +LW+V+ +L S ++ ++ + ++ L+S
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGH 210
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESD 127
I V L G + W P R + S G D +V +W + G+
Sbjct: 211 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 270
Query: 128 KETGHKKTITSLAKAADGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 184
T H+ + ++A S+ L G+ D+ ++W+ + + V ++ SP
Sbjct: 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 330
Query: 185 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244
++ G H + + + ++ +KGH + +L +PDG +
Sbjct: 331 HYKELISG------------HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 378
Query: 245 FSSGGEDGYVRL 256
+S D +RL
Sbjct: 379 VASAAADETLRL 390
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
+Q+N + G++D+ ++WNV +GA L + S S+ ++ K +I+ F + N
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGFAQ-N 344
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 115
+ I + P V LKG R+ P T+ SA D +R+W
Sbjct: 345 QLV----IWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 45/142 (31%)
Query: 88 QGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKET-------------- 130
QG + W P +++ G D +RIW+ +G L D +
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 335
Query: 131 --------------------------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 164
GH + SL + DG+ + + D++ +LW R
Sbjct: 336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW--RC 393
Query: 165 LELIKTYVTERPVNAVTMSPLL 186
EL ER + S L+
Sbjct: 394 FELDPARRREREKASAAKSSLI 415
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 83 ILKGPQGR----INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 138
IL P+ R +N W N +++ D V +W +G +L+ E + I+S
Sbjct: 107 ILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQP-GEYISS 163
Query: 139 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS 198
+A +G++ G+ +LWD + + ++ + +A S + +L G +
Sbjct: 164 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH---SARVGSLSWNSYILSSGSRSG 220
Query: 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ D R + + + + GH + L + PDG+ +SGG D V +
Sbjct: 221 HIHHHDVR-----------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 267
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/252 (18%), Positives = 94/252 (37%), Gaps = 27/252 (10%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
L G++ +LW+V+ +L S ++ ++ + ++ L+S
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGH 221
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESD 127
I V L G + W P R + S G D +V +W + G+
Sbjct: 222 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 281
Query: 128 KETGHKKTITSLAKAADGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 184
T H+ + ++A S+ L G+ D+ ++W+ + + V ++ SP
Sbjct: 282 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 341
Query: 185 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244
++ G H + + + ++ +KGH + +L +PDG +
Sbjct: 342 HYKELISG------------HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 389
Query: 245 FSSGGEDGYVRL 256
+S D +RL
Sbjct: 390 VASAAADETLRL 401
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
+Q+N + G++D+ ++WNV +GA L + S S+ ++ K +I+ F + N
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGFAQ-N 355
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 115
+ I + P V LKG R+ P T+ SA D +R+W
Sbjct: 356 QLV----IWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 45/142 (31%)
Query: 88 QGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKET-------------- 130
QG + W P +++ G D +RIW+ +G L D +
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 346
Query: 131 --------------------------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 164
GH + SL + DG+ + + D++ +LW R
Sbjct: 347 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW--RC 404
Query: 165 LELIKTYVTERPVNAVTMSPLL 186
EL ER + S L+
Sbjct: 405 FELDPARRREREKASAAKSSLI 426
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 96 WGPLNRTIISAGEDAIVRIWD----TETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 151
+ P S G D + +++ T+TG +S K H ++ L + DG+ +
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257
Query: 152 SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 211
S DK+ K+W+ TL++ KT + + ++ LG + T
Sbjct: 258 SADKTIKIWNVATLKVEKT---------IPVGTRIEDQQLG-------IIWTKQALVSIS 301
Query: 212 AKFFDKILQEEIGGVK----GHFGPINALAFNPDGKSFSSGGEDGYVR 255
A F + E+G + GH I AL+ + DGK+ S +G++
Sbjct: 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 82 LILKGPQG--RINRAVWGPLNRT-IISAGEDAIVRIWD 116
+I+KG +N +W LN T I+SAG+D+ ++ W+
Sbjct: 573 IIIKGAHAMSSVNSVIW--LNETTIVSAGQDSNIKFWN 608
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 175 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234
R +N+V P ++ G D + V + KF++ F + H ++
Sbjct: 148 RAMNSVDFKPSRPFRIISGSDD-NTVAIFEGPPFKFKSTFGE------------HTKFVH 194
Query: 235 ALAFNPDGKSFSSGGEDGYVRLHH 258
++ +NPDG F+S G DG + L++
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYN 218
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 131 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 164
GH K IT+L+ +ADG + + WD T
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDIST 355
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 21/178 (11%)
Query: 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL 149
++ W +I++ E+ +R+W+ +TG LL + H+ I S+ DG+H +
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF---HRAPIVSVKWNKDGTHII 165
Query: 150 TGSLDKSAKLWDARTLELIKTYVTER----PVNAVTMSPLLDHVVLGGGQDASAVTTTDH 205
+ ++ LW+ + +++ + + +NA S G G V D
Sbjct: 166 SMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS--------GDGSLGVDVEWVDD 217
Query: 206 RA----GKFEAKFFDKILQEE-IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 258
G A F +I ++ G + GH GPI+ L FN K S +DG +R+ H
Sbjct: 218 DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 147
I + + P +IS+ +D ++IW + G S+ T GH+ T+T +A G +
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 192
Query: 148 FLTGSLDKSAKLWDARTLELIKTY 171
L+ SLD + +LW+ T I T+
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTF 216
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 147
I + + P +IS+ +D ++IW + G S+ T GH+ T+T +A G +
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 195
Query: 148 FLTGSLDKSAKLWDARTLELIKTY 171
L+ SLD + +LW+ T I T+
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTF 219
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHF 148
+N W LN +++ + V +W+ ++G + L E+D+ T + S+ + DGS
Sbjct: 96 LNLLDWSNLN--VVAVALERNVYVWNADSGSVSALAETDEST----YVASVKWSHDGSFL 149
Query: 149 LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG 208
G + ++D + ++T + A + VL G + A+ D R
Sbjct: 150 SVGLGNGLVDIYDVESQTKLRTMAGHQ---ARVGCLSWNRHVLSSGSRSGAIHHHDVR-- 204
Query: 209 KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
I +IG ++GH + LA+ DG +SGG D V++
Sbjct: 205 ---------IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI 243
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGED--AI----VRIWDTETGKLLKESDKETGHKKTIT 137
+ G Q R+ W NR ++S+G AI VRI + + G L GH +
Sbjct: 172 MAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTL-------QGHSSEVC 221
Query: 138 SLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYVTERPVNAVTMSPLLDHVVLGGG 194
LA +DG +G D ++WDAR+ + KT V AV P +++ GG
Sbjct: 222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCPWQSNLLATGG 279
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Query: 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAK 141
L+G + W + S G D +V+IWD + K K T H + ++A
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-----TNHNAAVKAVAW 267
Query: 142 AADGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 184
S+ L G++DK W+A T + T V ++ SP
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP 313
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVK 67
L TG D T + W++ G QL +F S S+ + G+ LAV +E+ +HV
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV---LHVN 254
Query: 68 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 127
+ + VL LK + + +S G+D ++ W T G + +S
Sbjct: 255 KPDKYQLHLHESCVLSLK----------FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 304
Query: 128 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161
+ + ++ S + D + +TGS DK A +++
Sbjct: 305 ESS----SVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 98 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157
P ++ S D + +WD L+++ GH + + + DG+ TG LD +
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISNDGTKLWTGGLDNTV 207
Query: 158 KLWDAR 163
+ WD R
Sbjct: 208 RSWDLR 213
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 83 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 141
I G + W L+ ++ S +D + IWDT + K S H + L+
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 283
Query: 142 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD 196
L TGS DK+ LWD R L+L + T+ + + + V SP + ++ G D
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 9 LITGSADQTAKLWNVET-GAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELN----S 62
L TGSAD+T LW++ +L TF + V ++ ++ + ++ LN S
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 63 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 115
I ++ A D D E + I G +I+ W P +I S ED I++IW
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 83 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 141
I G + W L+ ++ S +D + IWDT + K S H + L+
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSF 283
Query: 142 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD 196
L TGS DK+ LWD R L+L + T+ + + + V SP + ++ G D
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 9 LITGSADQTAKLWNVET-GAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELN----S 62
L TGSAD+T LW++ +L TF + V ++ ++ + ++ LN S
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 63 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 115
I ++ A D D E + I G +I+ W P +I S ED I +IW
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 26/199 (13%)
Query: 83 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 141
I G + W L+ ++ S +D + IWDT K S H + L+
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 142 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD-- 196
L TGS DK+ LWD R L+L + ++ + + + V SP + ++ G D
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 347
Query: 197 ---------ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS-FS 246
+T D G E F I G GH I+ ++NP+
Sbjct: 348 LHVWDLSKIGEEQSTEDAEDGPPELLF--------IHG--GHTAKISDFSWNPNEPWIIC 397
Query: 247 SGGEDGYVRLHHFDPDYFN 265
S ED +++ + +N
Sbjct: 398 SVSEDNIMQVWQMAENVYN 416
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK------LAVITTDPFMELN- 61
L TGSAD+T LW++ +L +F+S + F V LA TD + +
Sbjct: 295 LATGSADKTVALWDLR-NLKLKLHSFESHKDEI-FQVQWSPHNETILASSGTDRRLHVWD 352
Query: 62 -SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 115
S I ++ D D E + I G +I+ W P II S ED I+++W
Sbjct: 353 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 26/199 (13%)
Query: 83 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 141
I G + W L+ ++ S +D + IWDT K S H + L+
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 142 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD-- 196
L TGS DK+ LWD R L+L + ++ + + + V SP + ++ G D
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345
Query: 197 ---------ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS-FS 246
+T D G E F I G GH I+ ++NP+
Sbjct: 346 LHVWDLSKIGEEQSTEDAEDGPPELLF--------IHG--GHTAKISDFSWNPNEPWIIC 395
Query: 247 SGGEDGYVRLHHFDPDYFN 265
S ED +++ + +N
Sbjct: 396 SVSEDNIMQVWQMAENVYN 414
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK------LAVITTDPFMELN- 61
L TGSAD+T LW++ +L +F+S + F V LA TD + +
Sbjct: 293 LATGSADKTVALWDLR-NLKLKLHSFESHKDEI-FQVQWSPHNETILASSGTDRRLHVWD 350
Query: 62 -SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 115
S I ++ D D E + I G +I+ W P II S ED I+++W
Sbjct: 351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 26/199 (13%)
Query: 83 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 141
I G + W L+ ++ S +D + IWDT K S H + L+
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 142 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD-- 196
L TGS DK+ LWD R L+L + ++ + + + V SP + ++ G D
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 349
Query: 197 ---------ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS-FS 246
+T D G E F I G GH I+ ++NP+
Sbjct: 350 LHVWDLSKIGEEQSTEDAEDGPPELLF--------IHG--GHTAKISDFSWNPNEPWIIC 399
Query: 247 SGGEDGYVRLHHFDPDYFN 265
S ED +++ + +N
Sbjct: 400 SVSEDNIMQVWQMAENVYN 418
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK------LAVITTDPFMELN- 61
L TGSAD+T LW++ +L +F+S + F V LA TD + +
Sbjct: 297 LATGSADKTVALWDLR-NLKLKLHSFESHKDEI-FQVQWSPHNETILASSGTDRRLHVWD 354
Query: 62 -SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 115
S I ++ D D E + I G +I+ W P II S ED I+++W
Sbjct: 355 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 83 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 141
I G + W L+ ++ S +D + IWDT + K S H + L+
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 142 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD 196
L TGS DK+ LWD R L+L + ++ + + + V SP + ++ G D
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 339
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPAR---SVDFAVGDKLAVITTDPFMELN---- 61
L TGSAD+T LW++ +L +F+S V ++ ++ + ++ LN
Sbjct: 289 LATGSADKTVALWDLR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 62 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 115
S I ++ D D E + I G +I+ W P +I S ED I+++W
Sbjct: 348 SKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Query: 100 NRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAK 158
R I+ A + V +W+ + + L S + H +++++ + G+ ++GS D K
Sbjct: 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152
Query: 159 LWDARTLELIKTYVTERP-VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 217
+WD ++ +Y V V SP D V L +D + + D R K +
Sbjct: 153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED-NRILLWDTRCPKPAS----- 206
Query: 218 ILQEEIGGVKGHFGPINALAFNP-DGKSFSSGGEDGYVRL 256
+IG + P +LA++P + F G E+G V L
Sbjct: 207 ----QIGCSAPGYLP-TSLAWHPQQSEVFVFGDENGTVSL 241
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 112 VRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170
VR W+ + +G+ + ++ + H + + + DGS T S DK+AK+WD + + I+
Sbjct: 66 VRCWEVQDSGQTIPKAQQM--HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI 123
Query: 171 YVTERPVNAV 180
+ PV +
Sbjct: 124 AQHDAPVKTI 133
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF 148
G + W + +A D ++WD + + ++ + + KTI + KA + S
Sbjct: 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHD-APVKTIHWI-KAPNYSCV 144
Query: 149 LTGSLDKSAKLWDARTLE-LIKTYVTERPVNAVTMSPL 185
+TGS DK+ K WD R+ ++ + ER A + P+
Sbjct: 145 MTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM 182
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/256 (17%), Positives = 96/256 (37%), Gaps = 17/256 (6%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
+ T S D+TAK+W++ + + D+P +++ + + + T + +
Sbjct: 101 VFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW---------DK 151
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK-ESD 127
+ + +++L+ P+ V P+ + +A IV + + + + ES
Sbjct: 152 TLKFWDTRSSNPMMVLQLPERCYCADVIYPM-AVVATAERGLIVYQLENQPSEFRRIESP 210
Query: 128 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK---TYVTERPVNAVTMSP 184
+ H+ K + F GS++ + K T+ R T +P
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270
Query: 185 LLDHVVLG-GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 243
+ V G T G+F F+DK + ++ + PI+A FN +G
Sbjct: 271 QDIYAVNGIAFHPVHGTLATVGSDGRFS--FWDKDARTKLKTSEQLDQPISACCFNHNGN 328
Query: 244 SFSSGGEDGYVRLHHF 259
F+ + + H F
Sbjct: 329 IFAYASSYDWSKGHEF 344
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 9 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68
+T SAD+T KLW + + F+ + R LAV+ F+ ++ +K
Sbjct: 158 FLTASADKTIKLWQNDKVIKTFSGIHNDVVR--------HLAVVDDGHFISCSNDGLIKL 209
Query: 69 IARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKL 122
+ D +L+ +G + L N I+S GED VRIW E G L
Sbjct: 210 VDXHTGD-------VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL 258
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163
++A D +++W + K++K H + LA DG HF++ S D KL D
Sbjct: 159 LTASADKTIKLWQND--KVIKTFSGI--HNDVVRHLAVVDDG-HFISCSNDGLIKLVDXH 213
Query: 164 TLELIKTYV-TERPVNAVTMSPLLDHVVLG 192
T ++++TY E V + + P D V G
Sbjct: 214 TGDVLRTYEGHESFVYCIKLLPNGDIVSCG 243
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 128 KETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLELIKTYVT----ERPVNAVTM 182
KE HK +T + T S+D + KLWD R ++ +Y+ E+PVNA
Sbjct: 199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYF 258
Query: 183 SPLLDHVVLGGGQDASAVTTTDHR 206
+P D++ + TTD R
Sbjct: 259 NP----------TDSTKLLTTDQR 272
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 128 KETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLELIKTYVT----ERPVNAVTM 182
KE HK +T + T S+D + KLWD R ++ +Y+ E+PVNA
Sbjct: 198 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYF 257
Query: 183 SPLLDHVVLGGGQDASAVTTTDHR 206
+P D++ + TTD R
Sbjct: 258 NP----------TDSTKLLTTDQR 271
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 160
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 126 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Query: 161 -DARTLELIKTYVTERP 176
R + IK P
Sbjct: 186 NSKRMMNAIKESYDYNP 202
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 160
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 167 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Query: 161 -DARTLELIKTYVTERP 176
R + IK P
Sbjct: 227 NSKRMMNAIKESYDYNP 243
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 160
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 161 -DARTLELIKTYVTERP 176
R + IK P
Sbjct: 190 NSKRMMNAIKESYDYNP 206
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 18/143 (12%)
Query: 100 NRTIISAGEDAIVRIW---DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156
N I++ GED + ++ E + + +D T H T + LT +
Sbjct: 160 NPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPE------ILTVNSIGQ 213
Query: 157 AKLWDARTL-----ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 211
K+WD R +++ P++ V P HVV GGQD ++ D R G
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDG-MLSIWDVRQGTMP 272
Query: 212 AKFFDKILQEEIGGVKGHFGPIN 234
K + E+ V HF P N
Sbjct: 273 VSLL-KAHEAEMWEV--HFHPSN 292
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 18/169 (10%)
Query: 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 61
++ ++ L GS D T +W E A TF D A K + D + L
Sbjct: 66 WRPHTSLLAAGSFDSTVSIWAKEESADR-TFEMDLLAIIEGHENEVKGVAWSNDGYY-LA 123
Query: 62 SAIHVKRIARDPADQGGE---SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW--- 115
+ K + D+ GE + +L+ + +W P + S+ D VRIW
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 116 --DTETGKLLKESDKETGHKKTITS--LAKAADGSHFLTGSLDKSAKLW 160
D E +L GH+ T+ S K +GS D + ++W
Sbjct: 184 DDDWECVAVL------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 19/149 (12%)
Query: 129 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA-----RTLELIKTYVT---ERPVNAV 180
ET HKK I S+A S GS D + +W RT E+ + E V V
Sbjct: 54 ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 181 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240
S ++ + + TD ++E +LQE H + + ++P
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECI---SVLQE-------HSQDVKHVIWHP 163
Query: 241 DGKSFSSGGEDGYVRLHH-FDPDYFNIKI 268
+S D VR+ +D D+ + +
Sbjct: 164 SEALLASSSYDDTVRIWKDYDDDWECVAV 192
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 91 INRAVWGPLNRTIISAGEDAIVRIW-DTETGKLLKESDKET---GHKKTITSLAKAADGS 146
I W P + + D+ V IW E+ E D GH+ + +A + DG
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120
Query: 147 HFLTGSLDKSAKLWD 161
+ T S DKS +W+
Sbjct: 121 YLATCSRDKSVWIWE 135
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 160
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Query: 161 -DARTLELIKTYVTERP 176
R + IK P
Sbjct: 191 NSKRMMNAIKESYDYNP 207
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 160
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 161 -DARTLELIKTYVTERP 176
R + IK P
Sbjct: 190 NSKRMMNAIKESYDYNP 206
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 105 SAGEDAIVRIWDTETGKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162
+ G DA +R+WD T K +++ DK+ + + +A ++ SLD + ++
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--NGRIISLSLDGTLNFYEL 326
Query: 163 RTLELIKTYV-TERPVNAVTMSPLL 186
E++KT + + A+T++PL+
Sbjct: 327 GHDEVLKTISGHNKGITALTVNPLI 351
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 105 SAGEDAIVRIWDTETGKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162
+ G DA +R+WD T K +++ DK+ + + +A ++ SLD + ++
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--NGRIISLSLDGTLNFYEL 326
Query: 163 RTLELIKTYV-TERPVNAVTMSPLL 186
E++KT + + A+T++PL+
Sbjct: 327 GHDEVLKTISGHNKGITALTVNPLI 351
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 166 ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225
EL + ++ V V ++P D + D + V D R + +A F +
Sbjct: 242 ELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVRGKASFLYSL------- 293
Query: 226 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 257
H P+NA F+PDG + + +R++
Sbjct: 294 --PHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 166 ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225
EL + ++ V V ++P D + D + V D R + +A F +
Sbjct: 242 ELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVRGKASFLYSL------- 293
Query: 226 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 257
H P+NA F+PDG + + +R++
Sbjct: 294 --PHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 166 ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225
EL + ++ V V ++P D + D + V D R + +A F +
Sbjct: 243 ELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVRGKASFLYSL------- 294
Query: 226 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 257
H P+NA F+PDG + + +R++
Sbjct: 295 --PHRHPVNAACFSPDGARLLTTDQKSEIRVY 324
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 113/280 (40%), Gaps = 53/280 (18%)
Query: 9 LITGSADQTAKLWNVETGAQ---------LFTFNFDSPAR--SVDFA---VGDKLAVITT 54
+ + S D+T KLW + + L T N DS SV FA +G KLA +
Sbjct: 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGN 132
Query: 55 DPFMELNSAIH------------VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 102
D + L A+ +K ++ PA+ +S L R + +
Sbjct: 133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL-QSDFCLSWCPSRFSP------EKL 185
Query: 103 IISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFL----TGSLDKS 156
+SA E AI+ + GK L + K GHK I S++ A + TG D
Sbjct: 186 AVSALEQAII----YQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241
Query: 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD 216
+++ + E + +E ++T S + D+ D A +D + +A+
Sbjct: 242 IRIF--KITEKLSPLASEE---SLTNSNMFDN---SADVDMDAQGRSDSNTEE-KAELQS 292
Query: 217 KILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ E + H G + ++++N G SS G+DG VRL
Sbjct: 293 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 113/280 (40%), Gaps = 53/280 (18%)
Query: 9 LITGSADQTAKLWNVETGAQ---------LFTFNFDSPAR--SVDFA---VGDKLAVITT 54
+ + S D+T KLW + + L T N DS SV FA +G KLA +
Sbjct: 72 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGN 130
Query: 55 DPFMELNSAIH------------VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 102
D + L A+ +K ++ PA+ +S L R + +
Sbjct: 131 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL-QSDFCLSWCPSRFSP------EKL 183
Query: 103 IISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFL----TGSLDKS 156
+SA E AI+ + GK L + K GHK I S++ A + TG D
Sbjct: 184 AVSALEQAII----YQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 239
Query: 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD 216
+++ + E + +E ++T S + D+ D A +D + +A+
Sbjct: 240 IRIF--KITEKLSPLASEE---SLTNSNMFDN---SADVDMDAQGRSDSNTEE-KAELQS 290
Query: 217 KILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ E + H G + ++++N G SS G+DG VRL
Sbjct: 291 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 330
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241
A++ R ++ ++ ++L+E +GG++G + LAF P+
Sbjct: 304 AISKAVLRVNEYMPRYAVQLLEERLGGLRGRHVGVLGLAFKPN 346
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 111/280 (39%), Gaps = 53/280 (18%)
Query: 9 LITGSADQTAKLWNVETGAQ---------LFTFNFDSPAR--SVDFA---VGDKLAVITT 54
+ + S D+T KLW + + L T N DS SV FA +G KLA +
Sbjct: 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGN 132
Query: 55 DPFMELNSAIHVKRIARDPADQ-----GGESVLILKGPQGRINRAV---WGPL----NRT 102
D + L A+ +P+D E ++ P + W P +
Sbjct: 133 DGILRLYDAL-------EPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185
Query: 103 IISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFL----TGSLDKS 156
+SA E AI+ + GK L + K GHK I S++ A + TG D
Sbjct: 186 AVSALEQAII----YQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241
Query: 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD 216
+++ + E + +E ++T S D+ D A +D + +A+
Sbjct: 242 IRIF--KITEKLSPLASEE---SLTNSNXFDN---SADVDXDAQGRSDSNTEE-KAELQS 292
Query: 217 KILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256
+ E + H G + ++++N G SS G+DG VRL
Sbjct: 293 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK-------ESDKETGHKKTITSLAKAA 143
+N + P ++ + +AG D I+ W+ +T K +K +S + I LA +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA-TS 312
Query: 144 DGSHFLTGSLDKSAKLWDARTLELIKTYVTE 174
D + ++D++ +L +A ++ +I Y E
Sbjct: 313 DDTFKTNAAIDQTIEL-NASSIYIIFDYENE 342
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 124
+N + P ++ + +AG D I+ W+ +T K +K
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 124
+N + P ++ + +AG D I+ W+ +T K +K
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,428,741
Number of Sequences: 62578
Number of extensions: 349861
Number of successful extensions: 2137
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 492
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)