Query 024407
Match_columns 268
No_of_seqs 129 out of 1695
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 04:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0643 Translation initiation 100.0 9.4E-45 2E-49 272.3 22.3 263 4-268 62-325 (327)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-37 3.7E-42 246.1 19.1 242 1-258 182-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 7.3E-35 1.6E-39 228.9 19.9 238 1-264 122-401 (480)
4 KOG0315 G-protein beta subunit 100.0 5.1E-34 1.1E-38 212.6 22.7 236 5-262 9-247 (311)
5 KOG0279 G protein beta subunit 100.0 1.9E-32 4.2E-37 207.2 25.0 236 2-260 71-313 (315)
6 KOG0286 G-protein beta subunit 100.0 4.1E-32 8.9E-37 206.7 25.0 245 2-257 63-342 (343)
7 KOG0263 Transcription initiati 100.0 7E-33 1.5E-37 234.9 17.1 193 1-263 458-652 (707)
8 KOG0271 Notchless-like WD40 re 100.0 3.2E-32 7E-37 214.1 19.1 233 1-258 164-479 (480)
9 KOG0278 Serine/threonine kinas 100.0 4.4E-32 9.5E-37 202.6 12.1 229 5-262 70-299 (334)
10 KOG0284 Polyadenylation factor 100.0 1.1E-30 2.5E-35 206.7 13.5 229 2-258 146-378 (464)
11 KOG0266 WD40 repeat-containing 100.0 1.3E-28 2.8E-33 211.3 25.9 234 2-262 167-411 (456)
12 KOG0285 Pleiotropic regulator 100.0 3.8E-29 8.3E-34 195.4 19.3 231 2-262 159-391 (460)
13 KOG0279 G protein beta subunit 100.0 4.5E-28 9.8E-33 183.6 24.0 229 5-262 27-264 (315)
14 KOG0291 WD40-repeat-containing 100.0 6.7E-28 1.5E-32 203.9 27.0 233 2-260 273-508 (893)
15 KOG0295 WD40 repeat-containing 100.0 2.5E-29 5.4E-34 196.6 15.0 237 1-262 115-366 (406)
16 KOG0318 WD40 repeat stress pro 100.0 1.4E-27 3.1E-32 194.7 25.6 243 1-268 242-568 (603)
17 KOG0272 U4/U6 small nuclear ri 100.0 6.5E-29 1.4E-33 197.5 17.3 201 34-262 174-377 (459)
18 KOG0276 Vesicle coat complex C 100.0 7.8E-28 1.7E-32 199.9 24.1 233 2-260 21-257 (794)
19 KOG0266 WD40 repeat-containing 100.0 2.8E-27 6E-32 203.0 26.4 235 1-261 210-455 (456)
20 KOG0263 Transcription initiati 100.0 2.1E-28 4.6E-33 207.8 17.9 222 2-261 386-608 (707)
21 KOG0296 Angio-associated migra 100.0 4.4E-27 9.5E-32 184.1 23.0 234 1-260 113-398 (399)
22 KOG0284 Polyadenylation factor 100.0 1.2E-28 2.6E-33 195.3 14.4 233 2-263 104-340 (464)
23 KOG0645 WD40 repeat protein [G 100.0 1.1E-26 2.3E-31 175.5 23.8 240 1-260 68-311 (312)
24 KOG0316 Conserved WD40 repeat- 100.0 7.5E-27 1.6E-31 173.3 21.9 233 2-264 25-261 (307)
25 KOG0265 U5 snRNP-specific prot 100.0 8.4E-28 1.8E-32 183.8 17.0 194 1-262 54-248 (338)
26 KOG0319 WD40-repeat-containing 100.0 2.2E-27 4.8E-32 200.3 20.9 233 5-260 376-619 (775)
27 KOG0305 Anaphase promoting com 100.0 5.5E-27 1.2E-31 195.4 21.7 234 2-262 225-463 (484)
28 KOG0313 Microtubule binding pr 100.0 8.2E-27 1.8E-31 183.4 21.2 238 6-262 115-378 (423)
29 KOG1446 Histone H3 (Lys4) meth 100.0 7.4E-26 1.6E-30 174.4 25.9 237 2-263 22-265 (311)
30 KOG0275 Conserved WD40 repeat- 100.0 9.6E-28 2.1E-32 185.8 14.1 235 2-262 221-469 (508)
31 KOG0273 Beta-transducin family 100.0 1.4E-26 3.1E-31 186.5 21.0 231 1-261 242-483 (524)
32 cd00200 WD40 WD40 domain, foun 100.0 1.2E-25 2.7E-30 180.6 26.0 230 1-258 58-289 (289)
33 KOG0291 WD40-repeat-containing 100.0 1E-25 2.2E-30 190.9 24.9 244 2-262 358-614 (893)
34 KOG0293 WD40 repeat-containing 100.0 2.4E-26 5.3E-31 182.7 19.7 245 2-262 232-515 (519)
35 KOG0318 WD40 repeat stress pro 99.9 4.1E-25 8.8E-30 180.5 26.4 244 2-261 67-351 (603)
36 PLN00181 protein SPA1-RELATED; 99.9 3.6E-25 7.7E-30 202.6 29.1 235 2-260 491-738 (793)
37 KOG0292 Vesicle coat complex C 99.9 1.7E-26 3.6E-31 198.6 18.3 235 1-261 16-281 (1202)
38 PTZ00421 coronin; Provisional 99.9 2.1E-24 4.6E-29 185.2 31.0 244 2-263 28-293 (493)
39 KOG0315 G-protein beta subunit 99.9 1.6E-25 3.4E-30 167.4 20.1 193 2-262 91-290 (311)
40 cd00200 WD40 WD40 domain, foun 99.9 2.7E-24 5.8E-29 172.8 28.9 233 2-262 17-251 (289)
41 KOG0273 Beta-transducin family 99.9 1.1E-24 2.3E-29 175.8 25.7 229 2-260 284-523 (524)
42 KOG0645 WD40 repeat protein [G 99.9 1.6E-24 3.4E-29 163.8 25.1 231 2-261 22-262 (312)
43 KOG0265 U5 snRNP-specific prot 99.9 5.5E-25 1.2E-29 168.5 21.5 229 2-259 98-337 (338)
44 KOG0283 WD40 repeat-containing 99.9 4.7E-26 1E-30 195.0 17.5 178 78-262 359-578 (712)
45 KOG1036 Mitotic spindle checkp 99.9 6.7E-25 1.5E-29 168.5 21.1 237 2-262 21-264 (323)
46 PTZ00420 coronin; Provisional 99.9 9.4E-24 2E-28 182.4 30.4 235 11-263 49-296 (568)
47 KOG0281 Beta-TrCP (transducin 99.9 1.2E-26 2.6E-31 181.1 10.6 222 5-261 206-429 (499)
48 KOG1407 WD40 repeat protein [F 99.9 1.8E-25 4E-30 168.1 16.6 191 2-260 28-219 (313)
49 KOG0313 Microtubule binding pr 99.9 8E-25 1.7E-29 172.3 20.0 233 6-261 159-419 (423)
50 PLN00181 protein SPA1-RELATED; 99.9 2E-23 4.3E-28 191.2 31.0 240 2-259 540-792 (793)
51 KOG0282 mRNA splicing factor [ 99.9 6.1E-25 1.3E-29 177.7 18.3 231 1-258 265-503 (503)
52 KOG0289 mRNA splicing factor [ 99.9 3.6E-24 7.8E-29 171.3 21.6 231 2-259 269-505 (506)
53 KOG0277 Peroxisomal targeting 99.9 7.3E-25 1.6E-29 164.3 16.0 227 6-258 73-307 (311)
54 KOG0306 WD40-repeat-containing 99.9 4.9E-24 1.1E-28 180.7 22.7 162 88-266 508-670 (888)
55 KOG0295 WD40 repeat-containing 99.9 1.4E-24 3E-29 170.2 17.9 231 1-259 157-405 (406)
56 KOG2096 WD40 repeat protein [G 99.9 4.5E-24 9.7E-29 164.9 20.2 166 84-264 224-406 (420)
57 KOG0640 mRNA cleavage stimulat 99.9 5.8E-25 1.3E-29 169.3 15.1 237 2-260 180-426 (430)
58 KOG0282 mRNA splicing factor [ 99.9 9.1E-25 2E-29 176.7 16.0 233 2-261 222-463 (503)
59 KOG0772 Uncharacterized conser 99.9 1.4E-24 3E-29 177.1 16.6 251 2-261 175-487 (641)
60 KOG0285 Pleiotropic regulator 99.9 1.3E-23 2.8E-28 164.6 19.5 238 2-261 201-440 (460)
61 KOG0973 Histone transcription 99.9 6.4E-23 1.4E-27 180.1 22.3 237 3-259 22-311 (942)
62 KOG0647 mRNA export protein (c 99.9 1.9E-22 4E-27 154.8 21.4 236 1-260 34-281 (347)
63 KOG0286 G-protein beta subunit 99.9 3.3E-22 7.1E-27 152.9 22.4 206 34-264 54-263 (343)
64 KOG0319 WD40-repeat-containing 99.9 1.2E-22 2.5E-27 172.0 21.8 240 2-262 332-579 (775)
65 KOG0276 Vesicle coat complex C 99.9 1.4E-22 3.1E-27 168.8 21.5 226 4-256 65-295 (794)
66 KOG0294 WD40 repeat-containing 99.9 1.6E-22 3.5E-27 156.0 19.7 227 4-262 51-283 (362)
67 KOG0274 Cdc4 and related F-box 99.9 2.3E-22 5.1E-27 173.2 21.8 223 5-263 260-485 (537)
68 KOG0264 Nucleosome remodeling 99.9 3.7E-22 7.9E-27 160.5 21.4 252 5-262 136-406 (422)
69 KOG0277 Peroxisomal targeting 99.9 3.2E-22 6.9E-27 150.2 18.4 223 14-262 36-267 (311)
70 KOG0268 Sof1-like rRNA process 99.9 3.6E-23 7.9E-28 162.3 13.8 223 7-262 80-304 (433)
71 KOG0310 Conserved WD40 repeat- 99.9 2.3E-22 5E-27 163.0 17.9 235 2-266 34-273 (487)
72 KOG0281 Beta-TrCP (transducin 99.9 2.8E-23 6.2E-28 162.3 10.7 232 5-262 246-479 (499)
73 KOG1332 Vesicle coat complex C 99.9 5.3E-22 1.1E-26 148.3 16.1 200 5-265 22-246 (299)
74 KOG0275 Conserved WD40 repeat- 99.9 4.5E-23 9.7E-28 160.0 10.8 231 1-258 270-507 (508)
75 PTZ00420 coronin; Provisional 99.9 1.1E-20 2.4E-25 163.5 26.0 169 79-261 65-249 (568)
76 KOG0641 WD40 repeat protein [G 99.9 2.3E-20 5E-25 138.4 23.6 239 1-261 96-350 (350)
77 KOG0640 mRNA cleavage stimulat 99.9 9E-22 2E-26 151.8 16.4 212 1-262 119-337 (430)
78 KOG0306 WD40-repeat-containing 99.9 3E-21 6.5E-26 163.9 20.9 231 2-259 381-621 (888)
79 PTZ00421 coronin; Provisional 99.9 1.6E-20 3.4E-25 161.4 25.7 194 2-210 83-294 (493)
80 KOG0646 WD40 repeat protein [G 99.9 9.4E-22 2E-26 158.8 16.9 244 8-263 52-310 (476)
81 KOG1274 WD40 repeat protein [G 99.9 4.9E-21 1.1E-25 165.8 21.9 232 1-260 20-262 (933)
82 KOG0289 mRNA splicing factor [ 99.9 2.5E-21 5.3E-26 155.2 18.6 167 79-262 252-421 (506)
83 KOG0310 Conserved WD40 repeat- 99.9 6E-21 1.3E-25 154.9 20.7 228 2-259 76-308 (487)
84 KOG0308 Conserved WD40 repeat- 99.9 1.9E-22 4.2E-27 168.6 12.5 198 4-262 35-245 (735)
85 KOG0300 WD40 repeat-containing 99.9 1.5E-21 3.3E-26 151.2 15.2 198 6-261 160-387 (481)
86 KOG0288 WD40 repeat protein Ti 99.9 5.2E-22 1.1E-26 158.1 12.7 233 2-262 183-419 (459)
87 KOG0296 Angio-associated migra 99.9 5.4E-20 1.2E-24 144.6 23.6 246 2-263 72-359 (399)
88 KOG0292 Vesicle coat complex C 99.9 1.1E-20 2.3E-25 163.3 21.3 236 1-262 58-323 (1202)
89 KOG0274 Cdc4 and related F-box 99.9 5.2E-20 1.1E-24 158.7 23.9 222 6-261 218-442 (537)
90 KOG0301 Phospholipase A2-activ 99.9 6.7E-21 1.4E-25 160.5 17.5 219 5-260 24-249 (745)
91 KOG0316 Conserved WD40 repeat- 99.9 3.1E-20 6.7E-25 138.3 18.0 226 3-259 68-298 (307)
92 KOG4283 Transcription-coupled 99.9 1.9E-20 4.2E-25 143.6 17.0 230 5-259 113-364 (397)
93 KOG0308 Conserved WD40 repeat- 99.9 1.2E-20 2.7E-25 157.9 17.1 237 4-262 83-329 (735)
94 KOG2096 WD40 repeat protein [G 99.9 2.3E-20 4.9E-25 144.6 17.3 173 82-264 80-312 (420)
95 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.2E-18 4.7E-23 140.6 29.9 233 2-263 38-282 (300)
96 KOG0302 Ribosome Assembly prot 99.9 3.1E-20 6.7E-25 146.6 17.8 174 78-262 201-380 (440)
97 KOG0283 WD40 repeat-containing 99.9 1.5E-20 3.3E-25 161.5 17.3 169 81-264 259-485 (712)
98 KOG0639 Transducin-like enhanc 99.9 6.1E-21 1.3E-25 155.7 13.6 230 3-260 428-663 (705)
99 KOG1407 WD40 repeat protein [F 99.9 6.6E-19 1.4E-23 133.0 23.4 228 4-261 75-312 (313)
100 KOG0641 WD40 repeat protein [G 99.9 3.5E-18 7.5E-23 126.9 25.2 238 1-262 39-305 (350)
101 KOG0973 Histone transcription 99.9 2.3E-19 4.9E-24 158.1 22.1 240 2-264 77-359 (942)
102 KOG1408 WD40 repeat protein [F 99.9 4.2E-20 9E-25 156.5 16.7 237 2-262 467-715 (1080)
103 KOG0269 WD40 repeat-containing 99.9 2E-20 4.3E-25 159.4 14.8 232 5-260 99-340 (839)
104 KOG2055 WD40 repeat protein [G 99.8 9.6E-19 2.1E-23 141.4 23.2 245 2-260 221-512 (514)
105 KOG0643 Translation initiation 99.8 2.6E-19 5.6E-24 135.6 18.3 176 83-266 5-183 (327)
106 KOG0288 WD40 repeat protein Ti 99.8 1.8E-19 3.8E-24 143.8 17.4 225 2-258 227-459 (459)
107 KOG0264 Nucleosome remodeling 99.8 2.1E-19 4.5E-24 144.8 17.5 214 32-261 121-348 (422)
108 KOG4283 Transcription-coupled 99.8 1.8E-19 3.9E-24 138.3 15.9 166 84-261 39-220 (397)
109 KOG0278 Serine/threonine kinas 99.8 3.3E-20 7.2E-25 139.3 11.7 231 3-264 26-258 (334)
110 KOG0299 U3 snoRNP-associated p 99.8 5.8E-19 1.2E-23 142.6 19.0 241 2-262 150-412 (479)
111 KOG0650 WD40 repeat nucleolar 99.8 3.8E-19 8.3E-24 147.9 18.3 240 3-259 409-679 (733)
112 KOG0639 Transducin-like enhanc 99.8 2E-19 4.3E-24 147.0 16.0 228 2-259 473-703 (705)
113 KOG1539 WD repeat protein [Gen 99.8 4E-18 8.6E-23 146.6 24.4 161 89-263 449-609 (910)
114 KOG0268 Sof1-like rRNA process 99.8 2E-19 4.4E-24 141.4 15.0 223 7-260 120-345 (433)
115 KOG0642 Cell-cycle nuclear pro 99.8 2.6E-19 5.6E-24 147.9 16.2 206 1-265 301-566 (577)
116 KOG2445 Nuclear pore complex c 99.8 3E-18 6.4E-23 132.3 20.9 202 1-261 20-257 (361)
117 KOG0267 Microtubule severing p 99.8 3.6E-20 7.8E-25 156.9 8.2 221 5-253 39-261 (825)
118 KOG0300 WD40 repeat-containing 99.8 1.9E-18 4E-23 134.2 16.9 176 73-261 299-477 (481)
119 KOG0303 Actin-binding protein 99.8 3.9E-18 8.6E-23 135.6 19.1 201 2-262 89-296 (472)
120 KOG0269 WD40 repeat-containing 99.8 1.7E-19 3.6E-24 153.8 12.1 159 92-262 91-252 (839)
121 KOG0305 Anaphase promoting com 99.8 1.4E-17 3.1E-22 139.5 23.1 226 7-261 189-420 (484)
122 KOG0301 Phospholipase A2-activ 99.8 2.5E-18 5.4E-23 145.2 18.5 219 5-262 70-290 (745)
123 KOG0321 WD40 repeat-containing 99.8 1E-17 2.2E-22 140.4 20.7 247 2-265 108-396 (720)
124 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.6E-16 7.9E-21 127.5 29.7 235 6-261 1-238 (300)
125 KOG0270 WD40 repeat-containing 99.8 2.5E-18 5.5E-23 138.3 15.7 164 85-263 240-407 (463)
126 KOG0772 Uncharacterized conser 99.8 1.1E-18 2.4E-23 142.9 13.4 174 81-265 160-399 (641)
127 KOG0647 mRNA export protein (c 99.8 1.1E-17 2.3E-22 128.9 17.9 206 35-267 27-239 (347)
128 KOG2106 Uncharacterized conser 99.8 1.6E-16 3.5E-21 130.1 24.6 231 2-263 208-480 (626)
129 KOG0293 WD40 repeat-containing 99.8 2E-18 4.4E-23 137.9 13.3 168 79-260 215-384 (519)
130 KOG0267 Microtubule severing p 99.8 3.8E-19 8.2E-24 150.7 9.5 164 80-260 62-226 (825)
131 KOG2106 Uncharacterized conser 99.8 2.9E-16 6.2E-21 128.6 24.9 240 2-262 254-522 (626)
132 KOG2048 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 135.1 22.8 232 2-258 77-317 (691)
133 KOG0290 Conserved WD40 repeat- 99.8 7.5E-18 1.6E-22 129.2 13.1 162 86-261 148-319 (364)
134 KOG1273 WD40 repeat protein [G 99.8 7.9E-17 1.7E-21 124.9 18.2 232 1-260 72-322 (405)
135 KOG1446 Histone H3 (Lys4) meth 99.8 1.1E-15 2.4E-20 118.5 22.7 229 2-259 64-302 (311)
136 KOG1274 WD40 repeat protein [G 99.8 4E-16 8.6E-21 135.8 22.5 221 4-253 64-293 (933)
137 KOG2048 WD40 repeat protein [G 99.8 8.9E-16 1.9E-20 129.6 23.8 237 1-262 32-277 (691)
138 KOG1332 Vesicle coat complex C 99.7 1.8E-17 3.8E-22 124.3 11.2 166 86-262 9-195 (299)
139 KOG1063 RNA polymerase II elon 99.7 7.6E-16 1.6E-20 130.4 21.8 241 2-262 275-604 (764)
140 KOG0299 U3 snoRNP-associated p 99.7 2.5E-16 5.4E-21 127.5 16.3 227 1-254 209-450 (479)
141 KOG0649 WD40 repeat protein [G 99.7 2.2E-15 4.7E-20 113.2 19.6 231 1-262 17-276 (325)
142 KOG2919 Guanine nucleotide-bin 99.7 1.6E-15 3.5E-20 118.1 18.7 236 2-261 57-328 (406)
143 KOG0270 WD40 repeat-containing 99.7 1E-15 2.2E-20 123.5 18.3 186 7-261 257-450 (463)
144 KOG2055 WD40 repeat protein [G 99.7 2.9E-15 6.2E-20 121.5 20.7 205 34-261 212-418 (514)
145 KOG4328 WD40 protein [Function 99.7 5.5E-16 1.2E-20 125.5 16.5 236 2-260 242-495 (498)
146 KOG0307 Vesicle coat complex C 99.7 3.5E-17 7.7E-22 145.2 10.4 167 83-261 111-285 (1049)
147 KOG0302 Ribosome Assembly prot 99.7 3.7E-16 8E-21 123.8 14.0 143 2-197 265-431 (440)
148 KOG1034 Transcriptional repres 99.7 2.5E-16 5.4E-21 122.7 12.8 148 6-165 55-213 (385)
149 KOG0646 WD40 repeat protein [G 99.7 7.4E-16 1.6E-20 125.0 15.9 179 3-186 90-331 (476)
150 KOG4378 Nuclear protein COP1 [ 99.7 8.5E-16 1.9E-20 125.8 15.7 210 5-241 90-304 (673)
151 KOG1007 WD repeat protein TSSC 99.7 2.6E-15 5.7E-20 115.3 17.3 174 87-263 169-364 (370)
152 KOG1009 Chromatin assembly com 99.7 1.8E-15 3.9E-20 120.9 16.8 157 2-166 21-198 (434)
153 KOG1063 RNA polymerase II elon 99.7 1.1E-15 2.3E-20 129.5 16.1 219 34-260 524-763 (764)
154 KOG1036 Mitotic spindle checkp 99.7 1.4E-14 3.1E-19 112.1 20.4 219 2-250 62-294 (323)
155 KOG0321 WD40 repeat-containing 99.7 5.4E-15 1.2E-19 124.3 18.9 238 5-265 63-352 (720)
156 KOG1273 WD40 repeat protein [G 99.7 2.8E-15 6.1E-20 116.4 15.5 158 91-261 26-184 (405)
157 KOG0294 WD40 repeat-containing 99.7 3.8E-14 8.3E-19 110.1 21.2 221 8-261 3-238 (362)
158 KOG1445 Tumor-specific antigen 99.7 1.5E-15 3.3E-20 127.8 13.7 86 78-166 667-753 (1012)
159 KOG0771 Prolactin regulatory e 99.7 2.9E-15 6.4E-20 120.2 14.7 195 1-262 151-356 (398)
160 KOG4328 WD40 protein [Function 99.7 7.6E-15 1.7E-19 119.0 17.0 223 21-259 171-398 (498)
161 KOG0322 G-protein beta subunit 99.7 1.9E-15 4.2E-20 114.6 12.2 157 88-259 150-322 (323)
162 KOG1240 Protein kinase contain 99.7 6.4E-14 1.4E-18 125.6 23.2 251 3-260 1058-1334(1431)
163 KOG1188 WD40 repeat protein [G 99.6 4.7E-15 1E-19 116.2 13.7 242 6-262 84-348 (376)
164 KOG1538 Uncharacterized conser 99.6 9.7E-15 2.1E-19 123.7 15.4 227 1-259 60-292 (1081)
165 KOG4378 Nuclear protein COP1 [ 99.6 1.5E-14 3.2E-19 118.7 15.9 231 7-261 4-240 (673)
166 COG2319 FOG: WD40 repeat [Gene 99.6 1E-12 2.2E-17 111.0 28.1 236 2-262 73-316 (466)
167 PRK11028 6-phosphogluconolacto 99.6 1.7E-12 3.6E-17 107.8 28.4 243 2-262 42-306 (330)
168 KOG2139 WD40 repeat protein [G 99.6 7.6E-14 1.6E-18 110.4 19.0 245 2-253 106-368 (445)
169 KOG2919 Guanine nucleotide-bin 99.6 1.8E-14 3.9E-19 112.4 13.7 192 3-194 120-360 (406)
170 COG2319 FOG: WD40 repeat [Gene 99.6 4.5E-12 9.8E-17 107.1 29.8 236 3-263 119-362 (466)
171 KOG1524 WD40 repeat-containing 99.6 1.9E-14 4.1E-19 119.0 13.8 167 2-196 112-278 (737)
172 PRK11028 6-phosphogluconolacto 99.6 6.4E-12 1.4E-16 104.3 28.8 241 9-263 5-261 (330)
173 KOG1188 WD40 repeat protein [G 99.6 2.1E-14 4.6E-19 112.6 12.8 149 101-263 41-199 (376)
174 KOG1517 Guanine nucleotide bin 99.6 2.1E-13 4.6E-18 120.8 19.4 238 5-263 1122-1384(1387)
175 KOG1539 WD repeat protein [Gen 99.6 6.8E-13 1.5E-17 114.9 21.0 232 6-263 124-368 (910)
176 KOG1007 WD repeat protein TSSC 99.6 2.2E-13 4.8E-18 104.8 16.0 212 35-260 63-289 (370)
177 PF08662 eIF2A: Eukaryotic tra 99.6 1.1E-12 2.3E-17 100.0 19.7 153 92-262 9-181 (194)
178 KOG2445 Nuclear pore complex c 99.6 1.3E-13 2.9E-18 106.9 14.5 216 5-260 72-318 (361)
179 KOG2110 Uncharacterized conser 99.6 2.6E-12 5.6E-17 102.0 22.0 191 1-261 53-249 (391)
180 KOG1524 WD40 repeat-containing 99.6 4.8E-14 1E-18 116.7 12.0 148 83-257 99-283 (737)
181 KOG1523 Actin-related protein 99.5 4.1E-13 8.9E-18 104.7 15.7 162 88-259 10-175 (361)
182 KOG1009 Chromatin assembly com 99.5 5.8E-13 1.3E-17 106.7 16.0 155 34-193 12-184 (434)
183 KOG2110 Uncharacterized conser 99.5 5.6E-12 1.2E-16 100.1 20.7 148 7-165 98-250 (391)
184 KOG0307 Vesicle coat complex C 99.5 4.8E-14 1E-18 125.6 9.9 197 2-262 124-329 (1049)
185 KOG1517 Guanine nucleotide bin 99.5 1.9E-12 4E-17 115.0 19.1 247 1-267 1071-1340(1387)
186 PRK01742 tolB translocation pr 99.5 4.2E-12 9E-17 109.0 20.9 211 1-241 210-426 (429)
187 KOG1034 Transcriptional repres 99.5 2.4E-12 5.2E-17 100.8 16.4 168 85-263 35-214 (385)
188 KOG0771 Prolactin regulatory e 99.5 5.6E-13 1.2E-17 107.3 13.2 156 92-259 148-310 (398)
189 KOG2321 WD40 repeat protein [G 99.5 6E-12 1.3E-16 105.2 19.4 243 3-260 60-343 (703)
190 PRK01742 tolB translocation pr 99.5 1.1E-11 2.3E-16 106.5 21.3 213 15-259 183-400 (429)
191 KOG0303 Actin-binding protein 99.5 2.2E-13 4.8E-18 108.9 9.4 121 84-260 77-203 (472)
192 KOG1310 WD40 repeat protein [G 99.5 2.6E-12 5.7E-17 106.9 15.9 209 2-262 58-305 (758)
193 KOG3881 Uncharacterized conser 99.5 1E-11 2.2E-16 99.3 18.6 159 91-262 151-322 (412)
194 KOG0644 Uncharacterized conser 99.5 1.6E-13 3.4E-18 119.0 8.6 230 2-259 198-467 (1113)
195 KOG0322 G-protein beta subunit 99.5 1.1E-12 2.3E-17 99.9 11.9 145 8-162 167-322 (323)
196 KOG0290 Conserved WD40 repeat- 99.5 8.3E-12 1.8E-16 96.4 16.5 195 5-257 162-362 (364)
197 KOG1334 WD40 repeat protein [G 99.5 8.6E-13 1.9E-17 108.1 11.8 251 1-259 149-465 (559)
198 KOG1538 Uncharacterized conser 99.5 9.7E-13 2.1E-17 111.8 12.4 151 90-262 14-164 (1081)
199 KOG1272 WD40-repeat-containing 99.5 1.8E-13 3.9E-18 111.4 7.7 236 2-253 137-402 (545)
200 KOG0650 WD40 repeat nucleolar 99.5 9.1E-12 2E-16 104.6 17.6 165 78-261 390-638 (733)
201 KOG1310 WD40 repeat protein [G 99.4 6.1E-13 1.3E-17 110.6 10.3 173 81-258 43-229 (758)
202 KOG2394 WD40 protein DMR-N9 [G 99.4 3E-13 6.5E-18 112.0 7.7 87 1-142 297-383 (636)
203 KOG2394 WD40 protein DMR-N9 [G 99.4 5.7E-12 1.2E-16 104.6 14.9 103 79-184 281-384 (636)
204 KOG1408 WD40 repeat protein [F 99.4 5.9E-12 1.3E-16 107.8 15.2 185 7-204 517-711 (1080)
205 KOG1587 Cytoplasmic dynein int 99.4 4.7E-11 1E-15 103.2 20.3 241 5-262 254-518 (555)
206 PRK03629 tolB translocation pr 99.4 6.1E-10 1.3E-14 95.6 27.0 218 17-263 180-409 (429)
207 KOG4227 WD40 repeat protein [G 99.4 5E-11 1.1E-15 95.7 18.1 152 2-164 64-226 (609)
208 KOG0649 WD40 repeat protein [G 99.4 1.3E-10 2.9E-15 87.7 19.1 107 82-193 150-263 (325)
209 KOG2111 Uncharacterized conser 99.4 3.3E-10 7.1E-15 88.7 21.6 83 81-164 174-257 (346)
210 KOG1963 WD40 repeat protein [G 99.4 2.8E-10 6.1E-15 99.5 23.6 170 86-262 203-377 (792)
211 PRK05137 tolB translocation pr 99.4 9.2E-10 2E-14 94.8 26.9 220 16-262 182-414 (435)
212 KOG1587 Cytoplasmic dynein int 99.4 1E-10 2.2E-15 101.2 20.7 231 16-263 222-475 (555)
213 KOG0642 Cell-cycle nuclear pro 99.4 1.9E-12 4.1E-17 107.8 9.3 136 83-263 289-429 (577)
214 PRK03629 tolB translocation pr 99.4 3E-10 6.5E-15 97.4 22.6 212 2-240 206-427 (429)
215 KOG1445 Tumor-specific antigen 99.4 2.4E-11 5.2E-16 103.0 15.2 201 2-262 87-295 (1012)
216 KOG2111 Uncharacterized conser 99.4 2E-09 4.3E-14 84.3 24.6 231 16-262 75-324 (346)
217 PF08662 eIF2A: Eukaryotic tra 99.4 2.5E-10 5.5E-15 87.0 18.6 100 88-194 59-163 (194)
218 PRK02889 tolB translocation pr 99.4 5.4E-10 1.2E-14 95.9 22.6 182 1-196 202-392 (427)
219 PRK04922 tolB translocation pr 99.3 5.1E-10 1.1E-14 96.3 21.6 179 1-194 210-398 (433)
220 KOG4497 Uncharacterized conser 99.3 3.9E-11 8.4E-16 94.3 12.4 160 91-256 51-236 (447)
221 KOG0974 WD-repeat protein WDR6 99.3 7.1E-11 1.5E-15 104.9 15.3 188 4-261 97-289 (967)
222 KOG1523 Actin-related protein 99.3 3.9E-10 8.5E-15 88.3 16.9 217 34-262 9-238 (361)
223 KOG1272 WD40-repeat-containing 99.3 8.7E-12 1.9E-16 101.8 7.5 165 90-262 131-325 (545)
224 PRK04922 tolB translocation pr 99.3 5.3E-09 1.2E-13 90.0 25.1 220 16-262 184-413 (433)
225 KOG0644 Uncharacterized conser 99.3 6E-12 1.3E-16 109.3 5.0 165 81-262 183-348 (1113)
226 PRK05137 tolB translocation pr 99.2 3.2E-09 7E-14 91.4 21.5 166 80-262 193-368 (435)
227 TIGR02800 propeller_TolB tol-p 99.2 1E-08 2.2E-13 87.9 23.5 181 2-196 197-386 (417)
228 PRK01029 tolB translocation pr 99.2 1.3E-08 2.7E-13 87.3 23.6 200 1-206 191-403 (428)
229 KOG0280 Uncharacterized conser 99.2 3.5E-09 7.5E-14 82.2 17.7 167 80-257 157-330 (339)
230 KOG4547 WD40 repeat-containing 99.2 4.9E-09 1.1E-13 88.3 18.8 216 2-263 1-223 (541)
231 PRK02889 tolB translocation pr 99.2 3.2E-08 6.9E-13 85.0 24.3 210 16-252 176-392 (427)
232 KOG4497 Uncharacterized conser 99.2 9E-09 1.9E-13 81.3 18.6 243 1-262 98-433 (447)
233 TIGR02800 propeller_TolB tol-p 99.2 1.1E-08 2.5E-13 87.6 20.8 165 82-263 183-357 (417)
234 PF02239 Cytochrom_D1: Cytochr 99.2 6.6E-08 1.4E-12 81.1 24.7 152 94-262 42-204 (369)
235 KOG3881 Uncharacterized conser 99.2 1.7E-09 3.8E-14 86.8 14.3 167 6-184 161-341 (412)
236 PF10282 Lactonase: Lactonase, 99.1 2.1E-07 4.5E-12 77.8 27.3 245 2-262 44-324 (345)
237 KOG1240 Protein kinase contain 99.1 2.8E-09 6.2E-14 96.6 16.5 174 76-260 1036-1225(1431)
238 TIGR02658 TTQ_MADH_Hv methylam 99.1 6.8E-07 1.5E-11 73.8 28.0 227 1-261 52-331 (352)
239 PF02239 Cytochrom_D1: Cytochr 99.1 2.8E-07 6.1E-12 77.3 26.2 243 2-262 44-304 (369)
240 KOG1963 WD40 repeat protein [G 99.1 6.5E-08 1.4E-12 85.1 22.6 245 2-262 213-489 (792)
241 PRK00178 tolB translocation pr 99.1 2.6E-07 5.7E-12 79.6 26.1 219 17-262 180-408 (430)
242 PRK04792 tolB translocation pr 99.1 7.5E-08 1.6E-12 83.1 22.5 182 1-196 224-414 (448)
243 KOG4227 WD40 repeat protein [G 99.1 3.7E-09 8E-14 85.2 12.7 168 82-262 50-227 (609)
244 PRK00178 tolB translocation pr 99.0 1.3E-07 2.9E-12 81.4 22.5 181 1-195 205-394 (430)
245 PF00400 WD40: WD domain, G-be 99.0 1.1E-09 2.3E-14 60.6 6.1 38 79-116 2-39 (39)
246 PRK04792 tolB translocation pr 99.0 7E-07 1.5E-11 77.2 26.2 219 17-262 199-427 (448)
247 KOG3914 WD repeat protein WDR4 99.0 6.1E-09 1.3E-13 84.0 11.7 158 1-171 69-231 (390)
248 COG2706 3-carboxymuconate cycl 99.0 6.7E-06 1.5E-10 66.1 28.8 245 2-263 47-324 (346)
249 PF10282 Lactonase: Lactonase, 99.0 9.9E-06 2.1E-10 67.7 30.2 248 8-262 1-277 (345)
250 KOG2139 WD40 repeat protein [G 99.0 1.3E-07 2.9E-12 75.6 17.7 162 86-262 138-313 (445)
251 KOG1409 Uncharacterized conser 99.0 2.9E-08 6.4E-13 78.7 13.7 88 77-166 186-273 (404)
252 KOG1064 RAVE (regulator of V-A 98.9 6.8E-09 1.5E-13 97.4 11.1 152 3-171 2217-2374(2439)
253 KOG2315 Predicted translation 98.9 1.2E-06 2.5E-11 73.9 22.5 236 2-262 133-392 (566)
254 COG2706 3-carboxymuconate cycl 98.9 5.7E-06 1.2E-10 66.5 25.1 237 15-262 15-276 (346)
255 KOG4190 Uncharacterized conser 98.9 3.7E-08 8E-13 82.9 11.4 118 5-170 746-866 (1034)
256 PRK01029 tolB translocation pr 98.8 2.1E-06 4.6E-11 73.7 22.3 221 17-262 166-405 (428)
257 KOG2321 WD40 repeat protein [G 98.8 9.1E-08 2E-12 80.7 13.4 179 5-192 145-331 (703)
258 PF00400 WD40: WD domain, G-be 98.8 4.6E-09 1E-13 58.0 4.0 35 224-258 5-39 (39)
259 KOG1354 Serine/threonine prote 98.8 7.5E-07 1.6E-11 71.0 15.8 256 2-262 33-361 (433)
260 COG5354 Uncharacterized protei 98.8 5.8E-06 1.2E-10 69.2 21.5 116 132-262 273-397 (561)
261 KOG1409 Uncharacterized conser 98.7 2.7E-06 5.9E-11 67.8 17.1 163 89-265 69-232 (404)
262 PLN02919 haloacid dehalogenase 98.7 9.1E-05 2E-09 70.4 30.2 170 91-262 685-890 (1057)
263 KOG0309 Conserved WD40 repeat- 98.6 5.5E-07 1.2E-11 78.4 11.8 248 3-264 33-343 (1081)
264 PF15492 Nbas_N: Neuroblastoma 98.6 1.5E-05 3.1E-10 62.4 18.3 166 1-174 50-270 (282)
265 KOG0974 WD-repeat protein WDR6 98.6 2.6E-06 5.7E-11 76.6 16.0 159 90-263 89-249 (967)
266 KOG1064 RAVE (regulator of V-A 98.6 3.8E-07 8.3E-12 86.2 11.1 161 86-262 2206-2368(2439)
267 TIGR02658 TTQ_MADH_Hv methylam 98.6 6.9E-05 1.5E-09 62.0 23.2 199 2-209 112-333 (352)
268 PRK04043 tolB translocation pr 98.6 5.2E-05 1.1E-09 64.9 23.4 177 2-194 195-387 (419)
269 KOG4532 WD40-like repeat conta 98.6 2.6E-05 5.7E-10 60.4 18.9 155 91-251 161-323 (344)
270 KOG2695 WD40 repeat protein [G 98.6 7.5E-08 1.6E-12 76.6 5.4 75 89-167 253-333 (425)
271 KOG2314 Translation initiation 98.6 2.2E-05 4.8E-10 66.6 19.9 117 132-262 444-575 (698)
272 KOG2315 Predicted translation 98.6 4.9E-06 1.1E-10 70.3 16.1 151 17-186 252-412 (566)
273 KOG1334 WD40 repeat protein [G 98.6 4.6E-07 1E-11 75.2 9.0 167 82-260 136-312 (559)
274 KOG4547 WD40 repeat-containing 98.5 9.6E-06 2.1E-10 68.9 16.4 102 86-192 100-207 (541)
275 KOG1275 PAB-dependent poly(A) 98.5 1.4E-06 3.1E-11 77.5 11.3 141 99-258 186-340 (1118)
276 PF15492 Nbas_N: Neuroblastoma 98.5 0.00027 5.9E-09 55.4 22.4 176 85-261 40-260 (282)
277 PF13360 PQQ_2: PQQ-like domai 98.5 0.00038 8.2E-09 54.8 23.5 185 4-262 34-232 (238)
278 KOG4714 Nucleoporin [Nuclear s 98.4 5.3E-06 1.2E-10 63.9 11.7 74 89-164 180-255 (319)
279 KOG2041 WD40 repeat protein [G 98.4 2.5E-06 5.4E-11 74.3 10.6 162 88-264 14-190 (1189)
280 PRK04043 tolB translocation pr 98.4 0.00015 3.2E-09 62.2 21.3 143 90-251 189-339 (419)
281 PF11768 DUF3312: Protein of u 98.4 2.1E-05 4.5E-10 67.3 15.7 75 86-165 257-331 (545)
282 COG4946 Uncharacterized protei 98.4 0.0006 1.3E-08 57.2 23.4 133 3-150 368-505 (668)
283 KOG2041 WD40 repeat protein [G 98.4 4.7E-06 1E-10 72.7 11.6 217 2-263 22-250 (1189)
284 KOG3914 WD repeat protein WDR4 98.4 1.1E-05 2.3E-10 65.7 12.2 156 92-262 66-225 (390)
285 KOG0882 Cyclophilin-related pe 98.4 3.1E-06 6.8E-11 69.8 9.2 165 87-262 8-176 (558)
286 PF04762 IKI3: IKI3 family; I 98.4 0.00017 3.8E-09 67.5 21.7 232 2-262 217-458 (928)
287 PF07433 DUF1513: Protein of u 98.4 0.00023 5.1E-09 57.2 19.5 191 1-196 57-277 (305)
288 KOG0882 Cyclophilin-related pe 98.3 6.3E-06 1.4E-10 68.1 10.1 175 85-263 50-234 (558)
289 KOG4532 WD40-like repeat conta 98.3 0.00017 3.6E-09 56.1 17.1 154 9-172 131-291 (344)
290 KOG4714 Nucleoporin [Nuclear s 98.3 1.2E-05 2.7E-10 61.9 10.3 149 98-261 99-255 (319)
291 KOG2695 WD40 repeat protein [G 98.3 9E-06 1.9E-10 65.1 9.8 157 10-174 228-387 (425)
292 TIGR03300 assembly_YfgL outer 98.2 0.00031 6.7E-09 59.5 19.4 149 5-170 64-215 (377)
293 TIGR03300 assembly_YfgL outer 98.2 0.0018 3.9E-08 54.9 23.7 225 5-261 104-339 (377)
294 PRK02888 nitrous-oxide reducta 98.2 0.00032 6.9E-09 61.7 19.0 140 2-166 200-354 (635)
295 COG4946 Uncharacterized protei 98.2 0.00049 1.1E-08 57.7 18.6 144 99-262 331-479 (668)
296 PLN02919 haloacid dehalogenase 98.2 0.00036 7.8E-09 66.5 19.9 77 91-167 806-892 (1057)
297 PF04762 IKI3: IKI3 family; I 98.1 0.0015 3.3E-08 61.4 22.6 170 88-267 120-340 (928)
298 KOG0280 Uncharacterized conser 98.1 0.00035 7.7E-09 55.0 14.7 148 103-261 88-242 (339)
299 smart00320 WD40 WD40 repeats. 98.1 1.8E-05 3.8E-10 42.3 5.7 38 79-116 3-40 (40)
300 KOG1354 Serine/threonine prote 98.0 0.00016 3.6E-09 58.0 12.2 146 89-263 26-196 (433)
301 COG5170 CDC55 Serine/threonine 98.0 0.00011 2.5E-09 58.2 10.4 135 130-267 169-319 (460)
302 KOG1912 WD40 repeat protein [G 97.9 0.0027 5.9E-08 56.6 17.5 134 39-188 19-169 (1062)
303 COG5354 Uncharacterized protei 97.8 0.004 8.6E-08 52.8 17.3 246 2-262 40-308 (561)
304 KOG4190 Uncharacterized conser 97.8 4.8E-05 1E-09 64.7 5.8 173 80-262 727-908 (1034)
305 KOG1832 HIV-1 Vpr-binding prot 97.8 8.9E-05 1.9E-09 66.5 7.5 83 78-163 1091-1175(1516)
306 smart00320 WD40 WD40 repeats. 97.8 4.9E-05 1.1E-09 40.4 3.9 32 227-258 9-40 (40)
307 KOG2066 Vacuolar assembly/sort 97.7 0.0027 5.8E-08 56.6 15.8 142 5-163 82-233 (846)
308 KOG0309 Conserved WD40 repeat- 97.7 0.00034 7.4E-09 61.7 10.0 155 91-261 70-233 (1081)
309 PF08450 SGL: SMP-30/Gluconola 97.7 0.015 3.3E-07 46.1 22.3 179 4-191 50-242 (246)
310 PF11768 DUF3312: Protein of u 97.7 0.0019 4.1E-08 55.7 14.0 147 92-241 209-368 (545)
311 KOG2066 Vacuolar assembly/sort 97.7 0.0039 8.4E-08 55.7 16.0 145 98-260 81-233 (846)
312 KOG1832 HIV-1 Vpr-binding prot 97.7 0.00016 3.5E-09 65.0 7.5 175 1-192 1108-1284(1516)
313 PF03178 CPSF_A: CPSF A subuni 97.7 0.024 5.2E-07 46.9 21.2 138 110-262 62-204 (321)
314 PF08450 SGL: SMP-30/Gluconola 97.6 0.019 4.2E-07 45.5 24.6 159 92-262 43-215 (246)
315 COG0823 TolB Periplasmic compo 97.6 0.014 3E-07 50.2 18.1 182 1-195 199-390 (425)
316 PF07433 DUF1513: Protein of u 97.6 0.029 6.3E-07 45.4 18.7 159 94-263 56-250 (305)
317 COG5170 CDC55 Serine/threonine 97.6 0.00064 1.4E-08 54.1 8.6 156 88-263 26-204 (460)
318 KOG3621 WD40 repeat-containing 97.6 0.0012 2.6E-08 57.9 11.0 123 88-261 33-155 (726)
319 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00033 7.1E-09 39.8 5.1 31 230-260 11-41 (47)
320 KOG2314 Translation initiation 97.5 0.0034 7.4E-08 53.8 13.1 94 90-185 251-357 (698)
321 KOG1912 WD40 repeat protein [G 97.5 0.00077 1.7E-08 59.8 9.5 133 7-183 438-572 (1062)
322 KOG1645 RING-finger-containing 97.5 0.00029 6.3E-09 57.7 6.5 85 78-166 183-269 (463)
323 PF08553 VID27: VID27 cytoplas 97.5 0.0053 1.2E-07 56.1 14.9 142 5-162 492-646 (794)
324 PF13360 PQQ_2: PQQ-like domai 97.5 0.03 6.5E-07 43.9 19.7 106 100-212 36-146 (238)
325 KOG2114 Vacuolar assembly/sort 97.5 0.028 6.1E-07 50.9 18.4 200 2-204 31-243 (933)
326 KOG1920 IkappaB kinase complex 97.4 0.04 8.7E-07 51.8 19.6 234 2-267 76-329 (1265)
327 KOG3617 WD40 and TPR repeat-co 97.4 0.0069 1.5E-07 54.7 14.0 106 1-118 22-131 (1416)
328 KOG1645 RING-finger-containing 97.4 0.028 6.1E-07 46.5 16.3 69 1-122 200-270 (463)
329 KOG3617 WD40 and TPR repeat-co 97.4 0.00049 1.1E-08 61.7 6.7 99 154-267 40-140 (1416)
330 cd00216 PQQ_DH Dehydrogenases 97.3 0.11 2.4E-06 45.7 25.1 156 7-171 111-327 (488)
331 PRK11138 outer membrane biogen 97.2 0.098 2.1E-06 44.7 18.8 145 5-170 68-230 (394)
332 COG0823 TolB Periplasmic compo 97.2 0.015 3.3E-07 49.9 13.6 158 81-256 185-352 (425)
333 PF04053 Coatomer_WDAD: Coatom 97.2 0.046 1E-06 47.2 16.3 144 88-262 32-175 (443)
334 PRK02888 nitrous-oxide reducta 97.1 0.032 7E-07 49.5 15.0 72 89-164 321-405 (635)
335 KOG4640 Anaphase-promoting com 97.1 0.0041 8.9E-08 54.1 9.2 90 90-183 22-114 (665)
336 PRK11138 outer membrane biogen 97.1 0.15 3.2E-06 43.6 22.6 151 6-170 120-281 (394)
337 PF05096 Glu_cyclase_2: Glutam 97.0 0.12 2.6E-06 41.0 20.6 135 106-249 106-250 (264)
338 PF04053 Coatomer_WDAD: Coatom 96.9 0.23 5E-06 43.0 19.3 212 2-262 40-264 (443)
339 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.15 3.2E-06 40.2 21.9 108 7-127 24-132 (354)
340 KOG1008 Uncharacterized conser 96.9 0.00097 2.1E-08 58.0 3.5 191 6-206 70-275 (783)
341 KOG2114 Vacuolar assembly/sort 96.7 0.46 9.9E-06 43.5 18.8 166 82-261 58-244 (933)
342 KOG3621 WD40 repeat-containing 96.6 0.014 3E-07 51.6 8.4 78 87-164 75-155 (726)
343 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.13 2.7E-06 35.0 12.0 91 146-256 16-110 (111)
344 KOG2395 Protein involved in va 96.5 0.078 1.7E-06 45.7 12.3 151 5-163 344-500 (644)
345 KOG1920 IkappaB kinase complex 96.5 0.11 2.4E-06 49.0 14.2 77 87-168 67-143 (1265)
346 PF12894 Apc4_WD40: Anaphase-p 96.4 0.017 3.6E-07 32.8 5.5 30 88-117 11-40 (47)
347 KOG2079 Vacuolar assembly/sort 96.4 0.087 1.9E-06 49.1 12.6 71 87-162 129-202 (1206)
348 COG3391 Uncharacterized conser 96.4 0.53 1.1E-05 40.1 20.9 181 3-192 82-270 (381)
349 PF08553 VID27: VID27 cytoplas 96.4 0.19 4.1E-06 46.4 14.6 134 107-258 501-645 (794)
350 PF05694 SBP56: 56kDa selenium 96.3 0.62 1.3E-05 39.8 17.6 165 98-262 139-344 (461)
351 KOG4640 Anaphase-promoting com 96.3 0.028 6E-07 49.2 8.3 60 81-142 54-114 (665)
352 PF08596 Lgl_C: Lethal giant l 96.1 0.093 2E-06 44.7 10.9 86 77-163 75-173 (395)
353 PF04841 Vps16_N: Vps16, N-ter 96.1 0.76 1.6E-05 39.6 16.2 42 77-119 69-110 (410)
354 PF06433 Me-amine-dh_H: Methyl 96.0 0.71 1.5E-05 38.2 15.5 133 110-262 17-167 (342)
355 KOG1275 PAB-dependent poly(A) 96.0 0.099 2.1E-06 48.0 10.7 148 5-164 186-343 (1118)
356 PF00780 CNH: CNH domain; Int 96.0 0.63 1.4E-05 37.4 15.6 63 99-167 6-68 (275)
357 PF14783 BBS2_Mid: Ciliary BBS 95.8 0.34 7.4E-06 33.0 13.3 78 97-183 11-89 (111)
358 KOG2079 Vacuolar assembly/sort 95.8 0.061 1.3E-06 50.1 8.8 70 101-172 100-169 (1206)
359 PRK13616 lipoprotein LpqB; Pro 95.8 0.47 1E-05 42.8 14.3 155 89-260 350-525 (591)
360 KOG1008 Uncharacterized conser 95.6 0.0084 1.8E-07 52.4 2.4 167 84-260 98-275 (783)
361 PF06433 Me-amine-dh_H: Methyl 95.5 1.2 2.5E-05 36.9 22.8 235 2-262 43-322 (342)
362 PF04841 Vps16_N: Vps16, N-ter 95.1 1.9 4.2E-05 37.1 17.7 82 96-184 186-269 (410)
363 KOG2444 WD40 repeat protein [G 94.8 0.12 2.7E-06 39.7 6.4 55 100-165 114-168 (238)
364 PF10313 DUF2415: Uncharacteri 94.5 0.24 5.3E-06 27.3 5.3 32 89-120 1-35 (43)
365 PF00780 CNH: CNH domain; Int 94.4 2.2 4.7E-05 34.3 21.8 150 4-167 5-169 (275)
366 PF06977 SdiA-regulated: SdiA- 94.1 2.5 5.3E-05 33.7 18.6 173 83-261 16-202 (248)
367 PF03178 CPSF_A: CPSF A subuni 94.0 3 6.4E-05 34.5 19.5 133 16-163 62-202 (321)
368 PF06977 SdiA-regulated: SdiA- 94.0 2.5 5.4E-05 33.6 20.6 179 2-187 29-234 (248)
369 PF15390 DUF4613: Domain of un 93.6 5.1 0.00011 35.7 14.4 153 90-266 21-190 (671)
370 PF12234 Rav1p_C: RAVE protein 93.6 3.8 8.2E-05 37.2 13.9 61 100-162 41-103 (631)
371 PF11715 Nup160: Nucleoporin N 93.5 0.56 1.2E-05 42.0 9.0 74 98-171 156-256 (547)
372 cd00216 PQQ_DH Dehydrogenases 93.5 5.2 0.00011 35.4 20.4 70 101-172 111-192 (488)
373 PF02897 Peptidase_S9_N: Proly 93.4 4.7 0.0001 34.7 17.0 112 92-207 127-261 (414)
374 COG3391 Uncharacterized conser 93.4 4.6 9.9E-05 34.5 18.6 163 2-172 123-292 (381)
375 PF10168 Nup88: Nuclear pore c 93.3 4.4 9.6E-05 37.6 14.3 33 230-262 146-181 (717)
376 TIGR02276 beta_rpt_yvtn 40-res 93.2 0.68 1.5E-05 25.0 6.0 33 4-36 1-34 (42)
377 PF07569 Hira: TUP1-like enhan 93.2 0.92 2E-05 35.3 8.6 68 97-165 19-97 (219)
378 PF12234 Rav1p_C: RAVE protein 93.0 1.5 3.2E-05 39.7 10.5 108 7-117 42-155 (631)
379 PF14655 RAB3GAP2_N: Rab3 GTPa 93.0 3.6 7.9E-05 35.4 12.5 89 81-172 300-407 (415)
380 KOG4649 PQQ (pyrrolo-quinoline 92.9 2.5 5.5E-05 33.6 10.4 69 100-171 63-131 (354)
381 PF10313 DUF2415: Uncharacteri 92.9 0.69 1.5E-05 25.5 5.4 30 135-164 2-34 (43)
382 PHA02713 hypothetical protein; 92.5 3.4 7.4E-05 37.2 12.4 53 99-154 351-408 (557)
383 PF07676 PD40: WD40-like Beta 92.4 0.52 1.1E-05 25.2 4.7 27 231-257 9-38 (39)
384 COG5167 VID27 Protein involved 92.4 2.5 5.4E-05 36.9 10.6 61 99-163 572-632 (776)
385 KOG2395 Protein involved in va 92.4 4.9 0.00011 35.3 12.3 145 100-258 345-498 (644)
386 PF05694 SBP56: 56kDa selenium 92.1 3.9 8.4E-05 35.2 11.3 100 15-120 221-344 (461)
387 PF15390 DUF4613: Domain of un 92.0 8.8 0.00019 34.3 16.0 154 35-205 19-185 (671)
388 PF08596 Lgl_C: Lethal giant l 91.8 2.1 4.6E-05 36.6 9.7 80 90-170 3-122 (395)
389 PF00930 DPPIV_N: Dipeptidyl p 91.7 1.8 3.9E-05 36.4 9.3 94 154-256 22-127 (353)
390 KOG4460 Nuclear pore complex, 91.6 8.2 0.00018 34.0 12.8 93 135-262 105-200 (741)
391 PF14727 PHTB1_N: PTHB1 N-term 91.5 8.6 0.00019 33.2 14.0 64 100-163 37-105 (418)
392 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.4 10 0.00022 34.0 22.2 156 101-261 121-334 (527)
393 COG3204 Uncharacterized protei 91.0 7.3 0.00016 31.6 16.1 105 86-192 83-198 (316)
394 PRK13616 lipoprotein LpqB; Pro 91.0 12 0.00026 34.0 16.0 114 134-256 350-472 (591)
395 KOG2444 WD40 repeat protein [G 91.0 0.56 1.2E-05 36.2 4.9 56 103-163 33-88 (238)
396 TIGR02276 beta_rpt_yvtn 40-res 90.9 1.5 3.4E-05 23.5 5.7 32 143-174 1-33 (42)
397 PF14870 PSII_BNR: Photosynthe 90.6 8.5 0.00018 31.7 16.8 154 86-257 142-301 (302)
398 PHA02713 hypothetical protein; 89.6 15 0.00032 33.2 13.5 54 111-167 433-493 (557)
399 PF10168 Nup88: Nuclear pore c 89.4 4.4 9.6E-05 37.6 10.2 75 90-165 86-181 (717)
400 COG3386 Gluconolactonase [Carb 88.6 13 0.00027 30.8 19.2 98 84-182 158-262 (307)
401 KOG4441 Proteins containing BT 88.4 19 0.00042 32.6 15.9 96 99-197 427-533 (571)
402 PF00930 DPPIV_N: Dipeptidyl p 87.9 15 0.00033 30.9 20.9 240 3-262 1-268 (353)
403 PF03088 Str_synth: Strictosid 87.7 5.9 0.00013 25.9 8.2 42 152-193 34-75 (89)
404 PF01011 PQQ: PQQ enzyme repea 87.5 2.2 4.7E-05 22.7 4.4 30 8-37 2-31 (38)
405 KOG4441 Proteins containing BT 87.4 22 0.00048 32.2 19.3 140 99-254 380-535 (571)
406 PF10647 Gmad1: Lipoprotein Lp 86.7 15 0.00031 29.4 11.9 112 135-258 25-142 (253)
407 PF14655 RAB3GAP2_N: Rab3 GTPa 86.7 5.3 0.00012 34.4 8.4 90 93-182 6-116 (415)
408 COG4590 ABC-type uncharacteriz 86.6 2.9 6.2E-05 36.0 6.6 80 84-164 216-300 (733)
409 TIGR02608 delta_60_rpt delta-6 86.5 2.9 6.2E-05 24.6 4.8 30 233-262 3-37 (55)
410 COG3490 Uncharacterized protei 86.4 16 0.00035 29.7 16.6 23 2-24 121-148 (366)
411 KOG1897 Damage-specific DNA bi 86.4 31 0.00068 32.9 22.5 135 112-263 752-901 (1096)
412 smart00564 PQQ beta-propeller 86.3 2 4.4E-05 21.7 3.8 25 8-32 8-32 (33)
413 COG3823 Glutamine cyclotransfe 85.9 14 0.00031 28.5 13.2 135 106-249 107-248 (262)
414 PF10647 Gmad1: Lipoprotein Lp 85.7 16 0.00036 29.1 15.8 150 90-251 25-186 (253)
415 PF14727 PHTB1_N: PTHB1 N-term 85.7 23 0.00049 30.7 24.3 148 5-162 36-203 (418)
416 PHA03098 kelch-like protein; P 85.6 26 0.00057 31.3 14.3 66 99-167 342-418 (534)
417 COG3386 Gluconolactonase [Carb 85.3 20 0.00043 29.6 16.2 156 94-260 30-193 (307)
418 KOG1900 Nuclear pore complex, 83.3 21 0.00046 35.0 11.2 74 88-164 178-273 (1311)
419 KOG4499 Ca2+-binding protein R 83.1 21 0.00045 28.2 11.2 91 92-182 161-261 (310)
420 PF14870 PSII_BNR: Photosynthe 82.9 25 0.00055 28.9 16.5 136 106-256 120-257 (302)
421 PF11715 Nup160: Nucleoporin N 82.2 3.4 7.3E-05 37.1 5.7 35 91-125 217-255 (547)
422 KOG4460 Nuclear pore complex, 81.3 26 0.00057 31.0 10.1 35 90-124 167-204 (741)
423 KOG1916 Nuclear protein, conta 80.5 4.5 9.8E-05 37.9 5.7 69 91-163 183-265 (1283)
424 TIGR02604 Piru_Ver_Nterm putat 79.4 38 0.00082 28.7 15.3 96 90-190 15-139 (367)
425 PF14781 BBS2_N: Ciliary BBSom 79.2 20 0.00044 25.5 10.8 83 95-182 5-100 (136)
426 PF07569 Hira: TUP1-like enhan 78.5 19 0.00042 28.0 8.1 28 142-169 19-46 (219)
427 PHA02790 Kelch-like protein; P 77.6 50 0.0011 29.2 15.0 66 99-167 318-388 (480)
428 COG3204 Uncharacterized protei 77.2 38 0.00083 27.7 17.3 157 2-163 93-263 (316)
429 PHA03098 kelch-like protein; P 76.7 56 0.0012 29.3 16.1 66 99-167 389-468 (534)
430 KOG3630 Nuclear pore complex, 76.4 44 0.00095 32.7 10.7 29 231-259 199-227 (1405)
431 PF14781 BBS2_N: Ciliary BBSom 75.9 26 0.00056 25.0 11.7 45 140-184 5-57 (136)
432 KOG4499 Ca2+-binding protein R 75.8 38 0.00082 26.8 11.1 46 95-143 218-263 (310)
433 KOG1896 mRNA cleavage and poly 75.1 90 0.002 30.9 12.4 32 232-263 1183-1216(1366)
434 PF12657 TFIIIC_delta: Transcr 74.4 33 0.00071 25.5 8.2 30 135-164 87-122 (173)
435 TIGR02604 Piru_Ver_Nterm putat 74.0 54 0.0012 27.8 16.2 104 83-189 66-198 (367)
436 PF14157 YmzC: YmzC-like prote 73.8 4.3 9.2E-05 24.3 2.5 21 242-262 29-49 (63)
437 PF01436 NHL: NHL repeat; Int 73.5 9.2 0.0002 18.7 3.5 24 234-257 5-28 (28)
438 PF12341 DUF3639: Protein of u 73.4 9.3 0.0002 18.7 3.6 24 232-257 3-26 (27)
439 KOG2377 Uncharacterized conser 72.5 67 0.0014 28.2 12.4 98 132-244 65-167 (657)
440 PF08728 CRT10: CRT10; InterP 71.2 90 0.002 29.1 15.7 114 135-259 102-245 (717)
441 PF14761 HPS3_N: Hermansky-Pud 70.7 48 0.001 25.7 11.5 47 146-192 29-77 (215)
442 PF14761 HPS3_N: Hermansky-Pud 70.3 23 0.00049 27.5 6.4 56 101-160 29-92 (215)
443 PF08801 Nucleoporin_N: Nup133 69.7 74 0.0016 27.5 14.3 31 232-262 191-221 (422)
444 COG3490 Uncharacterized protei 69.6 61 0.0013 26.5 14.6 58 94-153 119-181 (366)
445 TIGR03074 PQQ_membr_DH membran 69.5 1E+02 0.0023 29.2 13.4 73 100-172 194-287 (764)
446 PF05096 Glu_cyclase_2: Glutam 68.5 61 0.0013 26.1 14.6 107 93-206 49-157 (264)
447 PF07995 GSDH: Glucose / Sorbo 66.8 75 0.0016 26.5 12.7 52 91-144 4-59 (331)
448 KOG3616 Selective LIM binding 65.4 20 0.00043 33.3 5.9 67 91-163 17-83 (1636)
449 PF11635 Med16: Mediator compl 64.3 55 0.0012 30.9 9.0 38 133-170 259-296 (753)
450 PF13570 PQQ_3: PQQ-like domai 63.8 15 0.00032 19.5 3.3 20 100-119 21-40 (40)
451 TIGR03075 PQQ_enz_alc_DH PQQ-d 62.9 1.2E+02 0.0025 27.4 25.7 57 111-168 272-338 (527)
452 TIGR03606 non_repeat_PQQ dehyd 62.2 1.1E+02 0.0024 26.9 11.7 113 137-252 33-167 (454)
453 PF02897 Peptidase_S9_N: Proly 61.7 1E+02 0.0023 26.4 25.6 115 2-120 131-262 (414)
454 PF10584 Proteasome_A_N: Prote 60.8 2.7 5.9E-05 19.7 -0.0 8 1-8 7-14 (23)
455 KOG1897 Damage-specific DNA bi 60.2 1.7E+02 0.0037 28.4 22.7 76 88-163 530-613 (1096)
456 KOG1916 Nuclear protein, conta 58.7 31 0.00066 32.8 6.0 23 2-24 243-265 (1283)
457 PF01731 Arylesterase: Arylest 58.1 27 0.0006 22.6 4.3 29 233-261 56-85 (86)
458 KOG1900 Nuclear pore complex, 58.0 88 0.0019 31.1 9.0 34 231-265 179-214 (1311)
459 PF14583 Pectate_lyase22: Olig 58.0 1.2E+02 0.0026 26.0 17.7 167 17-195 169-371 (386)
460 PF07250 Glyoxal_oxid_N: Glyox 56.7 1E+02 0.0022 24.6 11.0 49 113-164 49-100 (243)
461 KOG3630 Nuclear pore complex, 55.2 77 0.0017 31.1 8.0 62 88-150 198-260 (1405)
462 TIGR03074 PQQ_membr_DH membran 54.8 2E+02 0.0043 27.4 24.5 139 6-172 194-353 (764)
463 KOG1898 Splicing factor 3b, su 54.3 2.2E+02 0.0048 27.9 13.3 113 133-262 935-1050(1205)
464 PF12657 TFIIIC_delta: Transcr 54.1 88 0.0019 23.2 9.2 31 231-261 86-122 (173)
465 PF03088 Str_synth: Strictosid 53.8 45 0.00098 21.8 4.8 49 105-157 32-81 (89)
466 PRK13684 Ycf48-like protein; P 53.7 1.3E+02 0.0029 25.1 16.6 151 89-258 173-329 (334)
467 COG5308 NUP170 Nuclear pore co 53.4 41 0.0009 32.0 5.9 26 232-259 183-208 (1263)
468 TIGR03032 conserved hypothetic 52.7 1.4E+02 0.0029 25.0 9.7 40 5-44 212-251 (335)
469 PRK10115 protease 2; Provision 52.4 2E+02 0.0044 26.9 12.6 101 91-196 129-244 (686)
470 PF07995 GSDH: Glucose / Sorbo 50.6 51 0.0011 27.5 5.9 77 80-157 245-329 (331)
471 PF07250 Glyoxal_oxid_N: Glyox 48.9 61 0.0013 25.8 5.7 68 95-162 73-147 (243)
472 PF08954 DUF1900: Domain of un 48.0 66 0.0014 23.0 5.2 33 88-120 10-43 (136)
473 TIGR03547 muta_rot_YjhT mutatr 46.9 1.7E+02 0.0037 24.4 12.0 13 155-167 168-180 (346)
474 TIGR03118 PEPCTERM_chp_1 conse 46.8 1.7E+02 0.0037 24.3 7.9 80 91-172 203-288 (336)
475 KOG3616 Selective LIM binding 45.6 61 0.0013 30.3 5.7 31 134-164 15-45 (1636)
476 KOG2247 WD40 repeat-containing 43.8 2.3 5E-05 36.9 -3.0 139 2-157 42-182 (615)
477 PF11635 Med16: Mediator compl 42.5 1.4E+02 0.0031 28.3 7.9 71 88-158 259-345 (753)
478 TIGR03054 photo_alph_chp1 puta 42.5 1.2E+02 0.0027 21.6 6.3 65 103-169 44-119 (135)
479 KOG2377 Uncharacterized conser 41.2 2.6E+02 0.0055 24.8 10.4 105 86-194 64-173 (657)
480 PF12768 Rax2: Cortical protei 40.4 2E+02 0.0044 23.5 10.2 80 88-168 36-128 (281)
481 KOG3950 Gamma/delta sarcoglyca 39.9 1.9E+02 0.0041 23.0 8.3 15 2-16 144-158 (292)
482 COG5167 VID27 Protein involved 39.7 2.9E+02 0.0062 24.9 12.0 138 104-262 484-634 (776)
483 COG4590 ABC-type uncharacteriz 36.8 3E+02 0.0065 24.4 11.2 61 101-166 329-389 (733)
484 PLN00033 photosystem II stabil 36.3 2.9E+02 0.0062 24.0 16.4 68 90-160 329-396 (398)
485 PF12768 Rax2: Cortical protei 36.3 2.4E+02 0.0052 23.1 11.1 55 110-167 16-76 (281)
486 PRK13684 Ycf48-like protein; P 34.9 2.7E+02 0.0059 23.3 15.3 70 90-162 261-330 (334)
487 TIGR03032 conserved hypothetic 34.7 2.7E+02 0.0059 23.3 9.3 47 99-151 212-258 (335)
488 PLN02153 epithiospecifier prot 34.4 2.7E+02 0.0059 23.1 12.7 13 155-167 217-229 (341)
489 KOG2109 WD40 repeat protein [G 33.1 47 0.001 30.4 3.1 70 84-156 311-391 (788)
490 COG3823 Glutamine cyclotransfe 33.0 2.4E+02 0.0052 22.1 7.4 88 100-194 56-148 (262)
491 PHA02790 Kelch-like protein; P 32.0 3.6E+02 0.0079 23.9 10.8 63 99-167 362-427 (480)
492 PF08728 CRT10: CRT10; InterP 30.9 2.9E+02 0.0064 26.0 7.7 71 90-162 165-245 (717)
493 PRK05560 DNA gyrase subunit A; 30.8 4.9E+02 0.011 25.0 12.3 110 5-118 603-721 (805)
494 COG5290 IkappaB kinase complex 30.5 92 0.002 29.4 4.5 98 93-192 251-354 (1243)
495 KOG2280 Vacuolar assembly/sort 29.0 5.1E+02 0.011 24.6 13.5 31 231-261 217-247 (829)
496 KOG2247 WD40 repeat-containing 28.9 24 0.00051 31.0 0.6 93 90-185 76-170 (615)
497 PF14583 Pectate_lyase22: Olig 28.4 3.9E+02 0.0084 23.1 22.8 81 87-168 186-277 (386)
498 PHA03092 semaphorin-like prote 27.7 60 0.0013 22.1 2.2 33 234-267 65-97 (134)
499 PF06739 SBBP: Beta-propeller 25.9 1.1E+02 0.0025 16.1 3.2 21 232-252 14-34 (38)
500 PF14779 BBS1: Ciliary BBSome 25.9 3.2E+02 0.0069 22.0 6.3 58 101-159 196-254 (257)
No 1
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-45 Score=272.28 Aligned_cols=263 Identities=55% Similarity=0.888 Sum_probs=243.5
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCC-CCCCCceEE
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP-ADQGGESVL 82 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (268)
-+++.|+|||.|.++|+||+++|+++..++.+.+++.+.|++++.+++++.+..+...+.+.+.+++... .....+|..
T Consensus 62 ~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 62 WDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred CCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 4678899999999999999999999999999999999999999999999999888888888888887653 233456788
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEEC
Q 024407 83 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~ 162 (268)
++..+.+.++.+.|.|.++.|++|..||.|.+||+++++....- ...|.+.|+.+.+++|..++++++.|.+-++||.
T Consensus 142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred EecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec--hhhhccccccccccCCcceEEecccCccceeeec
Confidence 89999999999999999999999999999999999998654332 2468899999999999999999999999999999
Q ss_pred CCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 163 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
++.++++++..+.|+++.+++|..+.+++++|.++..+.....+.|.++++||+....++++.+++|.++|++++|||+|
T Consensus 220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeeeCCCeEEEEeeCCCcceecC
Q 024407 243 KSFSSGGEDGYVRLHHFDPDYFNIKI 268 (268)
Q Consensus 243 ~~lasgs~Dg~i~i~~~~~~~~~~~~ 268 (268)
+..+||++||+||+++++++||.+|+
T Consensus 300 ksYsSGGEDG~VR~h~Fd~~YF~~~~ 325 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRLHHFDSNYFDFKF 325 (327)
T ss_pred cccccCCCCceEEEEEeccchhheEe
Confidence 99999999999999999999999875
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=246.11 Aligned_cols=242 Identities=25% Similarity=0.334 Sum_probs=193.2
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCC---eEEEEEcCCCcccccceEeee---ee---
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGD---KLAVITTDPFMELNSAIHVKR---IA--- 70 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~--- 70 (268)
.||.|++.|||||++|++|+|+......+..+. |...+..+.|+|.. .++..+.|+...++....... +.
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~ 261 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL 261 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch
Confidence 389999999999999999999999988877776 67889999999973 344455555554444322100 00
Q ss_pred ------------------------eCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeec
Q 024407 71 ------------------------RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 126 (268)
Q Consensus 71 ------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 126 (268)
+.+...+...++...||+.+|.+++|+|||..++|||.|..-||||+++++.+..+
T Consensus 262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEe
Confidence 11223334455556899999999999999999999999999999999999988766
Q ss_pred ccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEecc
Q 024407 127 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 205 (268)
Q Consensus 127 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 205 (268)
. +|..+|.+|+|+|+|.+|+|++.|++++|||+|..+.+.++. +..-+..+.+.|..++++++++.|+. +..|.
T Consensus 342 ~---gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs- 416 (459)
T KOG0272|consen 342 A---GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWS- 416 (459)
T ss_pred c---ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeec-
Confidence 4 799999999999999999999999999999999887766654 34567888999977777777777754 23333
Q ss_pred CCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEe
Q 024407 206 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~ 258 (268)
....+.++.+.||.+.|.+++++||+.+++|++.|.+|++|+
T Consensus 417 -----------~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 417 -----------TRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -----------CCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 223344567889999999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-35 Score=228.90 Aligned_cols=238 Identities=26% Similarity=0.413 Sum_probs=180.4
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.|||+|..|+|||.|.|+|+||+.+.++....+ |..-+.+++|+|+++.++.++ +++.+..|+-. .+..
T Consensus 122 ~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~-----~dg~I~lwdpk-----tg~~ 191 (480)
T KOG0271|consen 122 QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGS-----KDGSIRLWDPK-----TGQQ 191 (480)
T ss_pred EecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccc-----cCCeEEEecCC-----CCCc
Confidence 399999999999999999999999999888776 678899999999877655433 34455555321 2233
Q ss_pred eEEEEecCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 80 SVLILKGPQGRINRAVWGP-----LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
....|+||.++|++++|.| .+++|++++.||.|+|||+..++.+..+ .+|..+|+|+.+-.+| ++.+++.|
T Consensus 192 ~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l---sgHT~~VTCvrwGG~g-liySgS~D 267 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL---SGHTASVTCVRWGGEG-LIYSGSQD 267 (480)
T ss_pred ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe---ccCccceEEEEEcCCc-eEEecCCC
Confidence 4566899999999999986 5789999999999999999988776654 4899999999986554 89999999
Q ss_pred CcEEEEECCCcceeeeee-cCCceeEEEEc-----------cCCCe------------------------EEEeecCCCc
Q 024407 155 KSAKLWDARTLELIKTYV-TERPVNAVTMS-----------PLLDH------------------------VVLGGGQDAS 198 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~------------------------~~~~~~~~~~ 198 (268)
++|++|+...+.+...+. +..-++.++++ |.+.. -+++++++ .
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd-~ 346 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD-F 346 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC-c
Confidence 999999998887766553 33445555544 22211 12333332 3
Q ss_pred eEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCcc
Q 024407 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 264 (268)
Q Consensus 199 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~ 264 (268)
.+..|+... ..+.+..+.+|..-|+.+.||||++|+||+|-|..||+|+.+...|
T Consensus 347 tlflW~p~~-----------~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 347 TLFLWNPFK-----------SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred eEEEecccc-----------cccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 344444321 1223456789999999999999999999999999999999987754
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.1e-34 Score=212.64 Aligned_cols=236 Identities=14% Similarity=0.247 Sum_probs=186.2
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecC-CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
+.-+|+|+|.|.|||+|...+|.+..+++|. ..+..+...|..+.++++... .+++.++.. ....|+..
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q------hvRlyD~~S----~np~Pv~t 78 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ------HVRLYDLNS----NNPNPVAT 78 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC------eeEEEEccC----CCCCceeE
Confidence 3457999999999999999999999999984 558888888877766555422 333333322 23458899
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
+.+|++.|+.+.|..+|+.+++||.||++||||++.....+.+ .|.++|+++...|+...|+++..+|.|++||++
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~----~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY----QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc----cCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 9999999999999999999999999999999999985444433 478999999999999999999999999999999
Q ss_pred Ccceeeeeec--CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC
Q 024407 164 TLELIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241 (268)
Q Consensus 164 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 241 (268)
+..+...+.. ..++..+...|++..++.+...+.. ..|+...+.... ..+.+.+++.|.+.+..+.||||
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c--yvW~l~~~~~~s------~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC--YVWRLLNHQTAS------ELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE--EEEEccCCCccc------cceEhhheecccceEEEEEECCC
Confidence 8766555543 3478889999998887776555544 445443322111 12234567899999999999999
Q ss_pred CCeEEeeeCCCeEEEEeeCCC
Q 024407 242 GKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 242 ~~~lasgs~Dg~i~i~~~~~~ 262 (268)
++|||++|.|.+++||+.++-
T Consensus 227 ~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 227 VKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred CcEEEeecCCceEEEEecCCc
Confidence 999999999999999998854
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-32 Score=207.18 Aligned_cols=236 Identities=21% Similarity=0.306 Sum_probs=179.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEc-CCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
-++||++.+|+|+|+++|+||+.+++....|. |...+.++++++++.+++.++ ++++.+++... .
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-------------~ 137 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-------------V 137 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-------------c
Confidence 37899999999999999999999998777775 677799999999876655443 44444444432 2
Q ss_pred eEEEEec--CCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 80 SVLILKG--PQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 80 ~~~~~~~--~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
+...+.. +.+.|+++.|+|. ..+|+++|.|++|++||+++.+....+ .+|+..++.+++||||+..++++.||
T Consensus 138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~---~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 138 CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF---IGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc---ccccccEEEEEECCCCCEEecCCCCc
Confidence 3333333 3789999999998 579999999999999999987765544 37999999999999999999999999
Q ss_pred cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc-ccccccceE
Q 024407 156 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPIN 234 (268)
Q Consensus 156 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~ 234 (268)
.+.+||++.++.+..+.+...+.+++|+|. .+.++. ..+.. |..||...+.....+ ..+.... .+.-.....
T Consensus 215 ~~~LwdL~~~k~lysl~a~~~v~sl~fspn-rywL~~-at~~s-IkIwdl~~~~~v~~l----~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 215 EAMLWDLNEGKNLYSLEAFDIVNSLCFSPN-RYWLCA-ATATS-IKIWDLESKAVVEEL----KLDGIGPSSKAGDPICL 287 (315)
T ss_pred eEEEEEccCCceeEeccCCCeEeeEEecCC-ceeEee-ccCCc-eEEEeccchhhhhhc----cccccccccccCCcEEE
Confidence 999999999999999988999999999996 333333 33222 566665544432111 1111111 112223467
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+++|++||..|.+|-.|+.|++|++.
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88999999999999999999999975
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.1e-32 Score=206.67 Aligned_cols=245 Identities=24% Similarity=0.412 Sum_probs=193.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC-CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|++|++.|+|+|.||.+.+||.-+...+..+..+ .-|...+|+|.+.+++.+. +++.-.+..+...........
T Consensus 63 ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG-----LdN~Csiy~ls~~d~~g~~~v 137 (343)
T KOG0286|consen 63 WSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG-----LDNKCSIYPLSTRDAEGNVRV 137 (343)
T ss_pred ecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC-----cCceeEEEeccccccccccee
Confidence 8999999999999999999999887777777754 3488899999887655433 233333333332211222233
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~i 159 (268)
...+.||++-+.++.|.+ ..+|+|++.|.+..+||+++++....+. +|...|.+++++| +++.+++++.|++.++
T Consensus 138 ~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~---GH~gDV~slsl~p~~~ntFvSg~cD~~akl 213 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH---GHTGDVMSLSLSPSDGNTFVSGGCDKSAKL 213 (343)
T ss_pred eeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec---CCcccEEEEecCCCCCCeEEecccccceee
Confidence 456889999999999988 6778999999999999999998877665 8999999999999 9999999999999999
Q ss_pred EECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee---------------------------
Q 024407 160 WDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE--------------------------- 211 (268)
Q Consensus 160 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------------------------- 211 (268)
||+|.+.+++++. ++..++++.|.|++..++.+ .+...+..+|.|...-.
T Consensus 214 WD~R~~~c~qtF~ghesDINsv~ffP~G~afatG--SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 214 WDVRSGQCVQTFEGHESDINSVRFFPSGDAFATG--SDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred eeccCcceeEeecccccccceEEEccCCCeeeec--CCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEee
Confidence 9999999999986 56789999999987654443 33344566665532211
Q ss_pred -----eEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEE
Q 024407 212 -----AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 257 (268)
Q Consensus 212 -----~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~ 257 (268)
...|+....+.+..+.+|.+.|.|+..+|||..++|||.|.++|||
T Consensus 292 y~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 292 YDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred ecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 1345666666777889999999999999999999999999999999
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7e-33 Score=234.89 Aligned_cols=193 Identities=30% Similarity=0.487 Sum_probs=166.4
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEE-EEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
.|+||.++|+|||.|+++|+|++.+.+.++.++ |..|+-.++|+|-+..+ .++.|.+..+|...+ .
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~------------~ 525 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH------------N 525 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc------------C
Confidence 499999999999999999999999999988876 78899999999977544 444455444444432 4
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
.++..+.||...|.|+.|+|++.++++||.|.++|+||..+|..++.+ .||.++|++++|||+|.+|++|+.|+.|+
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF---~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF---TGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe---cCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 577888999999999999999999999999999999999999887766 48999999999999999999999999999
Q ss_pred EEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 159 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
+||+.+++.+.. +.+|++.|.++.|
T Consensus 603 iWDl~~~~~v~~-------------------------------------------------------l~~Ht~ti~SlsF 627 (707)
T KOG0263|consen 603 IWDLANGSLVKQ-------------------------------------------------------LKGHTGTIYSLSF 627 (707)
T ss_pred EEEcCCCcchhh-------------------------------------------------------hhcccCceeEEEE
Confidence 999987654322 2468888999999
Q ss_pred CCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 239 NPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 239 sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
|.||..||+||.|.+|++|++..-+
T Consensus 628 S~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 628 SRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999999999999886543
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-32 Score=214.05 Aligned_cols=233 Identities=25% Similarity=0.446 Sum_probs=181.1
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEE-Ee-cCCCceeeeeecCCe----EEEEEcCCCcccccceEeeeeeeCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFT-FN-FDSPARSVDFAVGDK----LAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~-~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
.|||||+.||||+.||+|++||.+++.++-. +. |...|.+++|.|... -.++++ ..++.+.+|++.
T Consensus 164 awsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~----skDg~vrIWd~~---- 235 (480)
T KOG0271|consen 164 AWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASS----SKDGSVRIWDTK---- 235 (480)
T ss_pred EECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecc----cCCCCEEEEEcc----
Confidence 4899999999999999999999999877543 33 667799999987421 122222 135566677653
Q ss_pred CCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeec----------------------------
Q 024407 75 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES---------------------------- 126 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------------- 126 (268)
.+.++..+.||+.+|+|+.|.-+ .++++|++|++|+||+...|+..+.+
T Consensus 236 --~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 236 --LGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred --CceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccc
Confidence 45678889999999999999743 57899999999999987543221110
Q ss_pred ------------------------------------------------ccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 127 ------------------------------------------------DKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 127 ------------------------------------------------~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
....+|+..|+.+.||||+.++++|+-|+.|+
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVk 392 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVK 392 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccccee
Confidence 01147999999999999999999999999999
Q ss_pred EEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 159 LWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 159 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
+||.++++.+.++. +-.++..++|+.+. .++++++.| ..+..|+.++..+ ...+.||.+.|.++.
T Consensus 393 LW~g~tGk~lasfRGHv~~VYqvawsaDs-RLlVS~SkD-sTLKvw~V~tkKl------------~~DLpGh~DEVf~vD 458 (480)
T KOG0271|consen 393 LWDGRTGKFLASFRGHVAAVYQVAWSADS-RLLVSGSKD-STLKVWDVRTKKL------------KQDLPGHADEVFAVD 458 (480)
T ss_pred eeeCCCcchhhhhhhccceeEEEEeccCc-cEEEEcCCC-ceEEEEEeeeeee------------cccCCCCCceEEEEE
Confidence 99999999888876 55678999999864 455555555 3567777665443 234679999999999
Q ss_pred ECCCCCeEEeeeCCCeEEEEe
Q 024407 238 FNPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~ 258 (268)
|+|||+.+++|+.|..+++|+
T Consensus 459 wspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 459 WSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceeecCCCceEEEeec
Confidence 999999999999999999996
No 9
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=4.4e-32 Score=202.58 Aligned_cols=229 Identities=31% Similarity=0.580 Sum_probs=184.3
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
+...-+|++.|-|.|+||.-+|..+.+++|...++.++|+.+...++.+.. ...+++..+.+. -.+...+
T Consensus 70 na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~-----ekllrvfdln~p-----~App~E~ 139 (334)
T KOG0278|consen 70 NATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQ-----EKLLRVFDLNRP-----KAPPKEI 139 (334)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccch-----HHHhhhhhccCC-----CCCchhh
Confidence 445578999999999999999999999999999999999987665554331 222233322221 2345567
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCC
Q 024407 85 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 85 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~ 164 (268)
.+|.+.|..+.|....+.|++++.|++||+||.++++.+..+. .+.+|+++.++++|.+|.++ .-+.|++||.++
T Consensus 140 ~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaks 214 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKS 214 (334)
T ss_pred cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceeeccCCCEEEEe-cCceeEEecccc
Confidence 8999999999999999999999999999999999999887765 46789999999999866554 457899999999
Q ss_pred cceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc-ccccccceEEEEECCCCC
Q 024407 165 LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALAFNPDGK 243 (268)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~ 243 (268)
...++.+..+..+.+.+++|.. .++++++.+.. +. .|+...++++.. .++|.++|.|+.|+|||.
T Consensus 215 f~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~-~~------------kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 215 FGLLKSYKMPCNVESASLHPKK-EFFVAGGEDFK-VY------------KFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred ccceeeccCccccccccccCCC-ceEEecCcceE-EE------------EEeccCCceeeecccCCCCceEEEEECCCCc
Confidence 9999999999999999999986 66777766642 22 334444555555 379999999999999999
Q ss_pred eEEeeeCCCeEEEEeeCCC
Q 024407 244 SFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 244 ~lasgs~Dg~i~i~~~~~~ 262 (268)
..|+||+||+||||+..+.
T Consensus 281 ~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred eeeccCCCceEEEEEecCC
Confidence 9999999999999998765
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=206.72 Aligned_cols=229 Identities=26% Similarity=0.443 Sum_probs=184.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe--cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
||+++..++||+.+|.||+|+..=. .+..+. +.+.|++++|+|.+..++.+++ ++.+.+|+..+. +
T Consensus 146 ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~Sd-----Dg~ikiWdf~~~------k 213 (464)
T KOG0284|consen 146 WSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSD-----DGTIKIWDFRMP------K 213 (464)
T ss_pred EccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecC-----CCeEEEEeccCC------c
Confidence 7899999999999999999997532 233332 3478999999997665555554 446666665442 3
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
+...|+||.-.|.+++|+|.-..|++||.|+.|++||.+++.++..+. +|+..|+.+.|.+++++|++++.|..+++
T Consensus 214 ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh---~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 214 EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH---GHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh---hccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 445679999999999999999999999999999999999999888765 69999999999999999999999999999
Q ss_pred EECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEE-EeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 160 WDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVT-TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 160 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
+|+|+-+.+..+. +...+.++.|+|....++++++.++..+. .++.. .+......+|...|++++
T Consensus 291 ~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-------------~p~~~i~~AHd~~iwsl~ 357 (464)
T KOG0284|consen 291 FDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-------------EPLGEIPPAHDGEIWSLA 357 (464)
T ss_pred EehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc-------------ccccCCCcccccceeeee
Confidence 9999766666654 66789999999998888888887765432 22211 001112357889999999
Q ss_pred ECCCCCeEEeeeCCCeEEEEe
Q 024407 238 FNPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~ 258 (268)
|+|-|-+|++|+.|.++|+|.
T Consensus 358 ~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 358 YHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ccccceeEeecCCCcceeeec
Confidence 999999999999999999984
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=211.26 Aligned_cols=234 Identities=25% Similarity=0.419 Sum_probs=186.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc--EEEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA--QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
||+||+.|++++.|+++++|+..+.+ ..... .+...|..++|++++..++.++. +..+.+|++. ..+
T Consensus 167 fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~-----D~tiriwd~~-----~~~ 236 (456)
T KOG0266|consen 167 FSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD-----DKTLRIWDLK-----DDG 236 (456)
T ss_pred EcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC-----CceEEEeecc-----CCC
Confidence 89999999999999999999997776 44443 47788999999998876555442 4456666651 345
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
..+.+++||...|++++|+|+|+.+++|+.|++||+||+++++....+. +|...|++++|++++.+|++++.|+.|+
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK---GHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---ccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 6788999999999999999999999999999999999999988877664 7999999999999999999999999999
Q ss_pred EEECCCcc--eeeeeec-CC--ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc--
Q 024407 159 LWDARTLE--LIKTYVT-ER--PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-- 231 (268)
Q Consensus 159 iwd~~~~~--~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~-- 231 (268)
+||+.++. ++..+.. +. ++..+.++|++.+++.+..+ ..+..||.+.+... ....+|..
T Consensus 314 vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d--~~~~~w~l~~~~~~------------~~~~~~~~~~ 379 (456)
T KOG0266|consen 314 VWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD--RTLKLWDLRSGKSV------------GTYTGHSNLV 379 (456)
T ss_pred EEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC--CeEEEEEccCCcce------------eeecccCCcc
Confidence 99999988 4444432 22 57899999998888776543 34566665544432 22344544
Q ss_pred -ceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 232 -PINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 232 -~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+.+...++.++++++|+.|+.|.+|+....
T Consensus 380 ~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 380 RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred eeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 3444566789999999999999999998864
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=3.8e-29 Score=195.35 Aligned_cols=231 Identities=22% Similarity=0.382 Sum_probs=184.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
+.|....|+|||.|+|+||||+.++.+..++. +-..++.+++++....+..+. .+..+..|++.. .+-
T Consensus 159 vdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-----edk~VKCwDLe~------nkv 227 (460)
T KOG0285|consen 159 VDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-----EDKQVKCWDLEY------NKV 227 (460)
T ss_pred eCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-----CCCeeEEEechh------hhh
Confidence 56888899999999999999999999988876 677789999988766554443 244566666543 344
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+..+.||-..|.+++.+|.-+.|++|+.|.++|+||+++...+..+ .||..+|..|.+.|....+++++.|++|++|
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l---~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL---SGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe---cCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 5567799999999999999999999999999999999998776655 4899999999999988899999999999999
Q ss_pred ECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 161 DARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 161 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
|++.++...++. +...+.+++.+|.. +.+++++.+. +..|+... ++-+..+.+|...|++++..
T Consensus 305 Dl~agkt~~tlt~hkksvral~lhP~e-~~fASas~dn--ik~w~~p~------------g~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHKKSVRALCLHPKE-NLFASASPDN--IKQWKLPE------------GEFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred eeccCceeEeeecccceeeEEecCCch-hhhhccCCcc--ceeccCCc------------cchhhccccccceeeeeeec
Confidence 999998777665 45578999999964 4444444442 33444333 33344467899999999988
Q ss_pred CCCCeEEeeeCCCeEEEEeeCCC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.|+ ++++|+..|.+..|+++..
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC
Confidence 775 5667999999999999876
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-28 Score=183.58 Aligned_cols=229 Identities=21% Similarity=0.361 Sum_probs=176.0
Q ss_pred CCCEEEEeecCCcEEEeecCC-----CcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 5 NSMTLITGSADQTAKLWNVET-----GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
+..+|+++|.|+++-+|++.. |..++.+. |.+.+..+.+++++++++.++ .+..+..|++ .++
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s-----wD~~lrlWDl------~~g 95 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS-----WDGTLRLWDL------ATG 95 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc-----ccceEEEEEe------cCC
Confidence 356899999999999999853 44455554 577788999999888877654 3455666665 456
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC--CCEEEEeeCCCc
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKS 156 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~ 156 (268)
++.+.+.||...|.+++|+||.+++++|+.|++|++|+........... .+++..|.++.|+|. ..++++++.|++
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~--~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt 173 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE--DSHREWVSCVRFSPNESNPIIVSASWDKT 173 (315)
T ss_pred cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec--CCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence 8889999999999999999999999999999999999998754433222 234889999999998 679999999999
Q ss_pred EEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 157 AKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
|++||+++.+...++. +...++.+.++|++..+ +++|.++ .+..||...+.. +.. ..|...|++
T Consensus 174 vKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslc-asGgkdg-~~~LwdL~~~k~------------lys-l~a~~~v~s 238 (315)
T KOG0279|consen 174 VKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLC-ASGGKDG-EAMLWDLNEGKN------------LYS-LEAFDIVNS 238 (315)
T ss_pred EEEEccCCcchhhccccccccEEEEEECCCCCEE-ecCCCCc-eEEEEEccCCce------------eEe-ccCCCeEee
Confidence 9999999988776654 45678999999987544 4444443 445566555443 111 246788999
Q ss_pred EEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 236 LAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 236 ~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
++|+|+-.+|+.+ -+-.|+||++++.
T Consensus 239 l~fspnrywL~~a-t~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 239 LCFSPNRYWLCAA-TATSIKIWDLESK 264 (315)
T ss_pred EEecCCceeEeec-cCCceEEEeccch
Confidence 9999986666654 4567999999876
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.7e-28 Score=203.93 Aligned_cols=233 Identities=23% Similarity=0.416 Sum_probs=192.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEec-CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|++..++||+|=..|...+|.+.....+..+.. +.++..+.+...+..++.++.+ .+.+.+|....+ ..
T Consensus 273 fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k----lgQLlVweWqsE------sY 342 (893)
T KOG0291|consen 273 FHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK----LGQLLVWEWQSE------SY 342 (893)
T ss_pred ccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc----cceEEEEEeecc------ce
Confidence 788889999999999999999999999998886 4778888887644444444443 334455544332 35
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+.+..||...++++.++|||.++++|+.||.|++||..++-++..+. .|.+.|+.+.|+..++.+++++.||+|+.|
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt---eHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT---EHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec---cCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 66678999999999999999999999999999999999987776664 699999999999999999999999999999
Q ss_pred ECCCcceeeeeecCCc--eeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 161 DARTLELIKTYVTERP--VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 161 d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
|+.+.+..+++..+.+ ..+++..|.+. ++++++.+.-.|..|+.++|.. +-.+.||.+||.+++|
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGql------------lDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQL------------LDILSGHEGPVSGLSF 486 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCee------------eehhcCCCCcceeeEE
Confidence 9999999888876554 45677777754 6666777877888888777653 2346799999999999
Q ss_pred CCCCCeEEeeeCCCeEEEEeeC
Q 024407 239 NPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 239 sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+|++..|||||.|.+||+|.+=
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred ccccCeEEeccccceEEEEEee
Confidence 9999999999999999999864
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=196.58 Aligned_cols=237 Identities=21% Similarity=0.336 Sum_probs=185.3
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.|+|+-.+.++++.|++||+||..+++....++ |...+..+.++..++.++.++... .+..|+... ...
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl-----~~~LWd~~~-----~~~ 184 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDL-----SAKLWDFDT-----FFR 184 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCcc-----chhheeHHH-----HHH
Confidence 378999999999999999999999999877776 566688999887776666554322 122333221 123
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
++..+.||.-.|.++.|-|.|.++++++.|.+|++|+..++-.+.++. +|+..|..++...||..+++++.|.+|++
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~---~h~ewvr~v~v~~DGti~As~s~dqtl~v 261 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP---GHSEWVRMVRVNQDGTIIASCSNDQTLRV 261 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc---CchHhEEEEEecCCeeEEEecCCCceEEE
Confidence 455677899999999999999999999999999999999998887765 79999999999999999999999999999
Q ss_pred EECCCcceeeee-ecCCceeEEEEccCCCeE-------------EEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc
Q 024407 160 WDARTLELIKTY-VTERPVNAVTMSPLLDHV-------------VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225 (268)
Q Consensus 160 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 225 (268)
|-+.+.++...+ .++.++.+++|.|...+- +.+.+.....+..||..++. ++-+
T Consensus 262 W~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~------------cL~t 329 (406)
T KOG0295|consen 262 WVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM------------CLFT 329 (406)
T ss_pred EEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe------------EEEE
Confidence 999998665544 356788888887753321 11122222345555555544 3445
Q ss_pred ccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 226 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 226 ~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+.+|.++|..++|+|.|+||+|+..|+++|||+++..
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 6799999999999999999999999999999999865
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.4e-27 Score=194.66 Aligned_cols=243 Identities=21% Similarity=0.272 Sum_probs=177.1
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeee---ecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF---AVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
.||||++.|+|+|.|+++|+||+.+.+.+..+.+...+...++ -+.+.++.++.++++...+ ...
T Consensus 242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln------------~~d 309 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLN------------PSD 309 (603)
T ss_pred EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEec------------ccC
Confidence 4899999999999999999999999999999887655432221 1245555554443322211 123
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee-----------ecc--c----------------
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK-----------ESD--K---------------- 128 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------~~~--~---------------- 128 (268)
..++..+.||++.|+++..+|++++|++|+.||.|.-||..++..-+ .+. .
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~ 389 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI 389 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence 34778899999999999999999999999999999999975432110 000 0
Q ss_pred ------c-----------------------------------cC--------cccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 129 ------E-----------------------------------TG--------HKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 129 ------~-----------------------------------~~--------h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
. .. -.....+++++|+++.++.++.|+.|.+
T Consensus 390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv 469 (603)
T KOG0318|consen 390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV 469 (603)
T ss_pred ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEE
Confidence 0 00 0123567889999999999999999999
Q ss_pred EECCCcce---eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 160 WDARTLEL---IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 160 wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
|.+...+. .....+..++..++++|++.+++++ +....+..||...+....+.| -=|+..|+|+
T Consensus 470 ysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~--Da~rkvv~yd~~s~~~~~~~w-----------~FHtakI~~~ 536 (603)
T KOG0318|consen 470 YSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG--DASRKVVLYDVASREVKTNRW-----------AFHTAKINCV 536 (603)
T ss_pred EEecCCcccceeeeecccCCceEEEECCCCcEEEEe--ccCCcEEEEEcccCceeccee-----------eeeeeeEEEE
Confidence 99987542 2334566789999999998776654 444556667665554433322 2388999999
Q ss_pred EECCCCCeEEeeeCCCeEEEEeeCCCcceecC
Q 024407 237 AFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 268 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i~i~~~~~~~~~~~~ 268 (268)
+|+|+.+.+||||.|-.|-||.++.+-..|+|
T Consensus 537 aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i 568 (603)
T KOG0318|consen 537 AWSPNNKLVATGSLDTNVIIYSVKKPAKHIII 568 (603)
T ss_pred EeCCCceEEEeccccceEEEEEccChhhheEe
Confidence 99999999999999999999999987554554
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.5e-29 Score=197.53 Aligned_cols=201 Identities=21% Similarity=0.363 Sum_probs=161.9
Q ss_pred cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCc
Q 024407 34 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAI 111 (268)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~ 111 (268)
.+.|+..+.|+..+..++.++ +.+..++|..+ +...+++++||+..|.++.|+|. +..++||+.||+
T Consensus 174 d~rPis~~~fS~ds~~laT~s-----wsG~~kvW~~~------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGS-----WSGLVKVWSVP------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred CCCcceeeEeecCCCeEEEee-----cCCceeEeecC------CcceeEEEeccccceeeEEEccCCCccceeeeccCCc
Confidence 356677778887766655443 33445555543 34678899999999999999997 468999999999
Q ss_pred EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeee-ecCCceeEEEEccCCCeEE
Q 024407 112 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVV 190 (268)
Q Consensus 112 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 190 (268)
+++|++.+...+.++ .+|...|..++|+|+|.+|+|++.|.+-++||+++.+.+..+ .+...+.+++|+|+|. ++
T Consensus 243 vklw~~~~e~~l~~l---~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~ 318 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDL---EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LA 318 (459)
T ss_pred eeeeccCCCcchhhh---hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc-ee
Confidence 999999987665554 489999999999999999999999999999999998655443 3566899999999865 45
Q ss_pred EeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 191 LGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 191 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+++|.|. .-..||.|+|..... +.+|...|.+++|+|+|..+||||.|++++||+++.-
T Consensus 319 ~tGGlD~-~~RvWDlRtgr~im~------------L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 319 ATGGLDS-LGRVWDLRTGRCIMF------------LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred eccCccc-hhheeecccCcEEEE------------ecccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 5555554 346789888887654 4689999999999999999999999999999998754
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.8e-28 Score=199.88 Aligned_cols=233 Identities=22% Similarity=0.363 Sum_probs=192.8
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEec-CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|-.+-++++-..|.|.+||.++...+++++. +.|++...|-.....++++++.. .++ ..++++++.
T Consensus 21 ~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~-----~Ir------Vfnynt~ek 89 (794)
T KOG0276|consen 21 FHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDM-----QIR------VFNYNTGEK 89 (794)
T ss_pred cCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCc-----eEE------EEeccccee
Confidence 789999999999999999999999999999985 78899998887777777766532 222 234567888
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~i 159 (268)
+..+.+|.+-|.++..+|...+++|+|.|-+|++||.+..-.. .+..+||...|++++|.| |.+.+++++.|++|++
T Consensus 90 V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~--~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 90 VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWAC--EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceee--eeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 9999999999999999999999999999999999999875332 233469999999999997 6778999999999999
Q ss_pred EECCCcceeeeee-cCCceeEEEEccCCCe-EEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 160 WDARTLELIKTYV-TERPVNAVTMSPLLDH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 160 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
|.+....+..++. ++..++++.+-+-++. .++++++| ..+ +.|+...+.+++++.||...|..+.
T Consensus 168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD-~ti------------KvWDyQtk~CV~TLeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD-LTI------------KVWDYQTKSCVQTLEGHTNNVSFVF 234 (794)
T ss_pred EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC-ceE------------EEeecchHHHHHHhhcccccceEEE
Confidence 9999877766664 5678999998875543 44444444 333 4555666788999999999999999
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeC
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
|+|.-.+|+|||+||++|||+-.
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCc
Confidence 99999999999999999999754
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.8e-27 Score=203.03 Aligned_cols=235 Identities=27% Similarity=0.445 Sum_probs=179.6
Q ss_pred CCCCCCCEEEEeecCCcEEEeec-CCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNV-ETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
.|+||++++++|+.|+++|+||+ +.++.+..++ |...+.+++|+|.+++++.++ .+..+.+|++. ++
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs-----~D~tvriWd~~------~~ 278 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS-----DDGTVRIWDVR------TG 278 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec-----CCCcEEEEecc------CC
Confidence 49999999999999999999999 5567777775 778899999999876555444 24566777664 46
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
+++..+++|++.|+.++|++++++|++++.|+.|++||+.++. +...+....... +++.+.|+|++.++++++.|+.
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCe
Confidence 8899999999999999999999999999999999999999988 334444332233 7999999999999999999999
Q ss_pred EEEEECCCcceeeeeecC-Cc---eeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccc-cc
Q 024407 157 AKLWDARTLELIKTYVTE-RP---VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FG 231 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h-~~ 231 (268)
+++||++++.++..+... .. ......++.+..++.+ +.+ ..+..|+.. ....+..+.+| ..
T Consensus 358 ~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg-~~d-~~v~~~~~~------------s~~~~~~l~~h~~~ 423 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSG-SED-GSVYVWDSS------------SGGILQRLEGHSKA 423 (456)
T ss_pred EEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEE-eCC-ceEEEEeCC------------ccchhhhhcCCCCC
Confidence 999999998877765321 11 1122234443333332 222 334444433 23344567788 88
Q ss_pred ceEEEEECCCCCeEEeee--CCCeEEEEeeCC
Q 024407 232 PINALAFNPDGKSFSSGG--EDGYVRLHHFDP 261 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs--~Dg~i~i~~~~~ 261 (268)
.+..++++|..+++++++ .|+.+++|..+.
T Consensus 424 ~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 424 AVSDLSSHPTENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred ceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence 899999999999999998 799999998763
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=2.1e-28 Score=207.82 Aligned_cols=222 Identities=26% Similarity=0.421 Sum_probs=166.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
||+|+.+||-|=.|..|++|.+...+. +.++....+..+. . .+.+ +. .+ ..........
T Consensus 386 fSddssmlA~Gf~dS~i~~~Sl~p~kl-~~lk~~~~l~~~d------~--~sad--------~~-~~---~~D~~~~~~~ 444 (707)
T KOG0263|consen 386 FSDDSSMLACGFVDSSVRVWSLTPKKL-KKLKDASDLSNID------T--ESAD--------VD-VD---MLDDDSSGTS 444 (707)
T ss_pred ecCCcchhhccccccEEEEEecchhhh-ccccchhhhcccc------c--cccc--------hh-hh---hccccCCcee
Confidence 899999999999999999999875432 2222111100000 0 0000 00 00 0111223334
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
..+.||+++|..+.|+|+.++|+++|.|+++|+|.+++...+-.. .||..||+.+.|+|-|.|++|++.|++.++|.
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y---~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY---KGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe---cCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 558899999999999999999999999999999999987665443 48999999999999999999999999999999
Q ss_pred CCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC
Q 024407 162 ARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240 (268)
Q Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 240 (268)
......++-+. +-..+.++.|+|+..+++.+ .....+..||...|.... -..||.++|.+++|||
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTG--SsD~tVRlWDv~~G~~VR------------iF~GH~~~V~al~~Sp 587 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATG--SSDRTVRLWDVSTGNSVR------------IFTGHKGPVTALAFSP 587 (707)
T ss_pred cccCCchhhhcccccccceEEECCcccccccC--CCCceEEEEEcCCCcEEE------------EecCCCCceEEEEEcC
Confidence 88766555443 34468899999986655544 333568888888776533 3468999999999999
Q ss_pred CCCeEEeeeCCCeEEEEeeCC
Q 024407 241 DGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 241 ~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+|++||||+.||.|++|++.+
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred CCceEeecccCCcEEEEEcCC
Confidence 999999999999999999986
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=4.4e-27 Score=184.10 Aligned_cols=234 Identities=15% Similarity=0.237 Sum_probs=185.5
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
+||.||.+||||+.+|.|++|+.+++.....+. .-..+..+.|||..+++++++. ++.+=+|.++. ..
T Consensus 113 ~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~-----DGsvWmw~ip~------~~ 181 (399)
T KOG0296|consen 113 SFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST-----DGSVWMWQIPS------QA 181 (399)
T ss_pred EEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC-----CCcEEEEECCC------cc
Confidence 699999999999999999999999999888876 4566889999998888877654 33444555532 24
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccc------------------------------
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE------------------------------ 129 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------------------ 129 (268)
..+++.||+.++++-.|.|+|+++++++.||+|++||+.+++++..+...
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 56778999999999999999999999999999999999998776654410
Q ss_pred ------------------cCcccceEEEEE---cCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCe
Q 024407 130 ------------------TGHKKTITSLAK---AADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH 188 (268)
Q Consensus 130 ------------------~~h~~~v~~v~~---s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (268)
.++...+.++.+ +..-...++++.||+|.|||+...+......++..+..+.|-+ ..+
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~ 340 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDY 340 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cch
Confidence 012222333332 3333467888999999999999877777778888999999998 456
Q ss_pred EEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 189 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 189 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
++.++. .+.+..||.|+|.... .+.||...|.+++++|+.+.++|+|.|++.+||..+
T Consensus 341 l~t~c~--~g~v~~wDaRtG~l~~------------~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 341 LLTACA--NGKVRQWDARTGQLKF------------TYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred heeecc--CceEEeeeccccceEE------------EEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 666544 3467888888877543 357899999999999999999999999999999865
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=195.35 Aligned_cols=233 Identities=23% Similarity=0.345 Sum_probs=183.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEE-EecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|.|+|+.|+||+..|.+.+|+......... ..|+.+|+.+.|+.++..++.+.. +..+++|.... ..
T Consensus 104 WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~-----gG~iKyWqpnm-------nn 171 (464)
T KOG0284|consen 104 WTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK-----GGMIKYWQPNM-------NN 171 (464)
T ss_pred EcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC-----CceEEecccch-------hh
Confidence 789999999999999999999743221111 137899999999988776665443 34556664322 23
Q ss_pred EEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 81 VLILKGPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
++.+.+|. ..|++++|+|....|++++.||+|+|||....+.-+.+ .+|...|.+++|+|....+++++.|..|++
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL---~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL---RGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee---ccCCCCcceeccCCccceeEEccCCceeEe
Confidence 45566665 89999999999999999999999999999877654444 489999999999999999999999999999
Q ss_pred EECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 160 WDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 160 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
||+|+++|+.++. +...+..+.|++++ ..+++++.|. .+. .+|.....++..+++|...|+++.|
T Consensus 249 WDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~-~~k------------v~DiR~mkEl~~~r~Hkkdv~~~~W 314 (464)
T KOG0284|consen 249 WDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQ-SCK------------VFDIRTMKELFTYRGHKKDVTSLTW 314 (464)
T ss_pred ecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCc-eEE------------EEehhHhHHHHHhhcchhhheeecc
Confidence 9999999998864 45578899999987 5555555553 233 3443345667778899999999999
Q ss_pred CCCC-CeEEeeeCCCeEEEEeeCCCc
Q 024407 239 NPDG-KSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 239 sp~~-~~lasgs~Dg~i~i~~~~~~~ 263 (268)
+|-. ..|.+|+.||.|..|.+.-+.
T Consensus 315 hP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 315 HPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred ccccccceeeccCCCceEEEeccccc
Confidence 9954 678999999999999988443
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=175.53 Aligned_cols=240 Identities=20% Similarity=0.334 Sum_probs=174.2
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCC--CcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVET--GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
.|+|.|++|++||.|.|+-+|.=.. ++.+..++ |...+.+++|++.+..++.++- +..+=+|.+. +...
T Consensus 68 Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-----DKSVWiWe~d---eddE 139 (312)
T KOG0645|consen 68 AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-----DKSVWIWEID---EDDE 139 (312)
T ss_pred eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC-----CCeEEEEEec---CCCc
Confidence 4899999999999999999997553 35556665 6788999999998776665541 2233344443 2345
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.+++.+|.+|+..|..+.|+|.-..|+++|+|++|++|+-..+..........+|...|.+++|++.|..|++++.|+++
T Consensus 140 fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv 219 (312)
T KOG0645|consen 140 FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTV 219 (312)
T ss_pred EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcce
Confidence 57888999999999999999999999999999999999877433222222345899999999999999999999999999
Q ss_pred EEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 158 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
+||-..+.- ...+.+++..+.|. .+.++.+++++...++... .+.-.. .|.... .....|...|++++
T Consensus 220 ~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s--~~~d~p-~~~l~~----~~~~aHe~dVNsV~ 287 (312)
T KOG0645|consen 220 SIWRLYTDL---SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKES--DSPDEP-SWNLLA----KKEGAHEVDVNSVQ 287 (312)
T ss_pred EeeeeccCc---chhcccceEeeeec--ccceEeccCCCEEEEEEec--CCCCCc-hHHHHH----hhhcccccccceEE
Confidence 999866421 12345677778887 2455555555544433322 111000 111111 12346888899999
Q ss_pred ECCC-CCeEEeeeCCCeEEEEeeC
Q 024407 238 FNPD-GKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 238 ~sp~-~~~lasgs~Dg~i~i~~~~ 260 (268)
|.|. .+.|++|+.||.|++|.+.
T Consensus 288 w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 288 WNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EcCCCCCceeecCCCceEEEEEec
Confidence 9995 5789999999999999875
No 24
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.5e-27 Score=173.25 Aligned_cols=233 Identities=20% Similarity=0.287 Sum_probs=178.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|+.||++.+||+.|+|||+|++..+.++..+. |...+..++.+.++ +++..+. +..+.+|+. ++++
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg------Dk~v~vwDV------~TGk 92 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG------DKAVQVWDV------NTGK 92 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC------CceEEEEEc------ccCe
Confidence 67899999999999999999999999999886 56667777766543 3333222 234555554 5678
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
.+..++||.+.|+.+.|+.+...+++|+.|.+++.||-++...- .++........|.++.+. ...+++++.||+++.
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e-PiQildea~D~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE-PIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC-ccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence 88999999999999999999999999999999999999875322 112223455678888764 567999999999999
Q ss_pred EECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceE--EEE
Q 024407 160 WDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN--ALA 237 (268)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~ 237 (268)
||+|.++.... +...+++++.+++++...+++.-.. ..++.++..++.++.+++|.+.-. ...
T Consensus 170 ydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~s--------------tlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 170 YDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDS--------------TLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred EEeecceeehh-hcCCcceeEEecCCCCEEEEeeccc--------------eeeecccchhHHHHHhcccccceeeeeee
Confidence 99999876544 3567899999999877666654332 234556666667777888876533 445
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeCCCcc
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFDPDYF 264 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~~~~~ 264 (268)
++.....+++||+||.+.+|.+.++..
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred ecccceeEEeccCCceEEEEEecccee
Confidence 666778899999999999999987644
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=8.4e-28 Score=183.82 Aligned_cols=194 Identities=30% Similarity=0.463 Sum_probs=159.8
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
+|+|||..|||||.|..|-+|++.. .+ +.
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~g-dc--------------------------------------------------eN 82 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYG-DC--------------------------------------------------EN 82 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccc-cc--------------------------------------------------cc
Confidence 5999999999999999999998421 11 11
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EEEEeeCCCcEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~i 159 (268)
..++++|++.|..+.|.++++.++++|.|++|+.||+++|+.++..+ +|..-|+.+..+.-|. .+.+++.|+++++
T Consensus 83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k---~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl 159 (338)
T KOG0265|consen 83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK---GHTSFVNSLDPSRRGPQLVCSGSDDGTLKL 159 (338)
T ss_pred eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc---cccceeeecCccccCCeEEEecCCCceEEE
Confidence 23467999999999999999999999999999999999999887665 6888888887554344 5668899999999
Q ss_pred EECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 160 WDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
||+|+.++++++....++.++.|....+.+..++-+. .+..||.+.. +....+.||.++|+.+..+
T Consensus 160 ~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn--~ikvWd~r~~------------d~~~~lsGh~DtIt~lsls 225 (338)
T KOG0265|consen 160 WDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN--DIKVWDLRKN------------DGLYTLSGHADTITGLSLS 225 (338)
T ss_pred EeecccchhhccccceeEEEEEecccccceeeccccC--ceeeeccccC------------cceEEeecccCceeeEEec
Confidence 9999999999988888999999998877776655433 3556665432 2334568999999999999
Q ss_pred CCCCeEEeeeCCCeEEEEeeCCC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|+|.++.|-+.|.++++|.+++-
T Consensus 226 ~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 226 RYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred cCCCccccccccceEEEEEeccc
Confidence 99999999999999999999864
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.2e-27 Score=200.32 Aligned_cols=233 Identities=19% Similarity=0.266 Sum_probs=181.1
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEE-----EecCCCceeeeeecCCe-EEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFT-----FNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
+|.+|+|||.|+++++|-++++..... ..|...+..++++.+.. +++.. ..+..+++|.++...+.. .
T Consensus 376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv-----S~D~tlK~W~l~~s~~~~-~ 449 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV-----SQDCTLKLWDLPKSKETA-F 449 (775)
T ss_pred cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe-----cCCceEEEecCCCccccc-c
Confidence 457999999999999998855433221 23677788888866433 22222 235677777776521111 1
Q ss_pred ceEE----EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 79 ESVL----ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 79 ~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
.+.. +-..|.+.|++++++|+.+.++|||+|++.++|+++..+....+ .+|+..|++|.|++....++|+|.|
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL---sGH~RGvw~V~Fs~~dq~laT~SgD 526 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL---SGHTRGVWCVSFSKNDQLLATCSGD 526 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe---eCCccceEEEEeccccceeEeccCC
Confidence 2222 34579999999999999999999999999999999977666555 4899999999999999999999999
Q ss_pred CcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 155 KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
++|+||.+.+++|++++. +...+..+.|-..+..++.++.++ .+. +|+-...++..++..|.+.|
T Consensus 527 ~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG--liK------------lWnikt~eC~~tlD~H~Drv 592 (775)
T KOG0319|consen 527 KTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG--LIK------------LWNIKTNECEMTLDAHNDRV 592 (775)
T ss_pred ceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC--cEE------------EEeccchhhhhhhhhcccee
Confidence 999999999999999997 667888889988877666655433 334 44444566777888999999
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
++++.+|....++||+.||.|.+|.=.
T Consensus 593 WaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 593 WALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred EEEeecCccceeEecCCCeEEEEeecC
Confidence 999999999999999999999999643
No 27
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.5e-27 Score=195.44 Aligned_cols=234 Identities=21% Similarity=0.324 Sum_probs=184.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEec--CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|+++|..|+.|-.+|+|.+||.++.+.+..+.. ...+.+++|. ..++..++. +..+...++.....
T Consensus 225 ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr-----~~~I~~~dvR~~~~----- 292 (484)
T KOG0305|consen 225 WSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSR-----DGKILNHDVRISQH----- 292 (484)
T ss_pred ECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecC-----CCcEEEEEEecchh-----
Confidence 789999999999999999999999888887764 5567777776 333332221 22233333322211
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEe--eCCCc
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTG--SLDKS 156 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~--~~d~~ 156 (268)
.+..+.+|..+|+.+.|++|++++++|+.|+.+.|||.........+ ..|.+.|.+++|+| ....||+| +.|++
T Consensus 293 ~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~---~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF---TEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE---eccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 11137899999999999999999999999999999999665554443 36999999999998 45677776 46999
Q ss_pred EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
|++||..++..+.......+++.+.|++....++.+.|.....+..|+.. ....+..+.+|+..|.++
T Consensus 370 i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p------------s~~~~~~l~gH~~RVl~l 437 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP------------SMKLVAELLGHTSRVLYL 437 (484)
T ss_pred EEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc------------ccceeeeecCCcceeEEE
Confidence 99999999999999888889999999999888998888776655555432 233455678999999999
Q ss_pred EECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 237 AFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
++||||..+++|+.|.++++|++-++
T Consensus 438 a~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 438 ALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999988763
No 28
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=8.2e-27 Score=183.44 Aligned_cols=238 Identities=20% Similarity=0.344 Sum_probs=176.5
Q ss_pred CCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCe---EEEEEcCCCcccccceEeeeeeeCCCCCCCceEE
Q 024407 6 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK---LAVITTDPFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
++.++||++||++|+||.+-........|..++..+++...+. .++.++ ++..+..|.+... ...-+.+.
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas-----~Dqtl~Lw~~~~~--~~~~~~~~ 187 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS-----MDQTLRLWKWNVG--ENKVKALK 187 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEec-----CCceEEEEEecCc--hhhhhHHh
Confidence 5789999999999999986554445556888998888765322 133222 3344455544322 11223334
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------ce------------eeecccccCcccceEEEE
Q 024407 83 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG----------KL------------LKESDKETGHKKTITSLA 140 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~------------~~~~~~~~~h~~~v~~v~ 140 (268)
.-+||...|-++...++|.++++|+.|.+|+||+..+. +. ...+....||+.+|.+|.
T Consensus 188 ~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 188 VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 45699999999999999999999999999999993210 00 001112358999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh
Q 024407 141 KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220 (268)
Q Consensus 141 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 220 (268)
|++ ...+.++++|.+|+.||+.++..+.++..+...+++..+|.. .++++++. ...+..||+|.+.-....
T Consensus 268 w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~-~Ll~~gss-dr~irl~DPR~~~gs~v~------ 338 (423)
T KOG0313|consen 268 WSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLS-KLLASGSS-DRHIRLWDPRTGDGSVVS------ 338 (423)
T ss_pred EcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeeccccc-ceeeecCC-CCceeecCCCCCCCceeE------
Confidence 987 778999999999999999999998888888899999999953 44444444 356888998876543322
Q ss_pred hhhccccccccceEEEEECCCCCe-EEeeeCCCeEEEEeeCCC
Q 024407 221 EEIGGVKGHFGPINALAFNPDGKS-FSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 221 ~~~~~~~~h~~~v~~~~~sp~~~~-lasgs~Dg~i~i~~~~~~ 262 (268)
.++.+|.+.|.++.|+|...+ |+||+.|+++++|+++.-
T Consensus 339 ---~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 339 ---QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred ---EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 245789999999999997754 999999999999999865
No 29
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.4e-26 Score=174.38 Aligned_cols=237 Identities=20% Similarity=0.279 Sum_probs=173.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEec-CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+++|..|++++.|.++++||..+++++..+.. .-.+..++|...+..++.++.+ .+..++.-.+ ...+.
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk---~d~tIryLsl------~dNky 92 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK---EDDTIRYLSL------HDNKY 92 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC---CCCceEEEEe------ecCce
Confidence 899999999999999999999999999988864 3345666666555555555432 2344444433 34578
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+..++||...|+++..+|-+..+++++.|++||+||++..++.--+. ...-..++|+|+|-++|++...+.|++|
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-----~~~~pi~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-----LSGRPIAAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-----cCCCcceeECCCCcEEEEecCCCeEEEE
Confidence 99999999999999999999999999999999999999766543332 1222346899999999999988899999
Q ss_pred ECCCcc--eeeeee----cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 161 DARTLE--LIKTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 161 d~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
|+|... +..++. ...+...+.|+|+|++++++...+. +...|.-.|.+...+-.. ..-..--.
T Consensus 168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~--~~~lDAf~G~~~~tfs~~---------~~~~~~~~ 236 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF--IYLLDAFDGTVKSTFSGY---------PNAGNLPL 236 (311)
T ss_pred EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc--EEEEEccCCcEeeeEeec---------cCCCCcce
Confidence 999752 333332 2346788999999999999865543 334444444432222111 00001115
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
...|+||++++++|+.||+|.+|+++...
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 78899999999999999999999997654
No 30
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=9.6e-28 Score=185.77 Aligned_cols=235 Identities=24% Similarity=0.386 Sum_probs=180.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE---------ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF---------NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 72 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (268)
|||||++|+|||.||-|-+||..+|+....+ -++.++.++.|+.+..+++.++ .++.+.+|++.
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs-----qDGkIKvWri~-- 293 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS-----QDGKIKVWRIE-- 293 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC-----cCCcEEEEEEe--
Confidence 9999999999999999999999888754332 2578899999998887765443 56788888875
Q ss_pred CCCCCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEe
Q 024407 73 PADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 151 (268)
Q Consensus 73 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 151 (268)
++.++..+. +|+..|+++.|+.|+..+++++.|.++|+--+++|+..+.+. +|.+.|+.+.|.+||.+++++
T Consensus 294 ----tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr---GHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 294 ----TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR---GHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred ----cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---CccccccceEEcCCCCeEEEe
Confidence 456776665 899999999999999999999999999999999999877665 899999999999999999999
Q ss_pred eCCCcEEEEECCCcceeeeeec---CCceeEEEEccCCC-eEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccc
Q 024407 152 SLDKSAKLWDARTLELIKTYVT---ERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 227 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 227 (268)
+.||+|++|+.++.+|+.++.. +.+++.+-.-|... ++++|......++- +.. |.+. +.|.. + +
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im--n~q-GQvV-rsfsS--G------k 434 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM--NMQ-GQVV-RSFSS--G------K 434 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE--ecc-ceEE-eeecc--C------C
Confidence 9999999999999999888753 45677777666443 34444333222221 111 1111 11111 1 0
Q ss_pred ccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 228 GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 228 ~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..-+.-.+..+||.|.++.+.++|+.+..|.+...
T Consensus 435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 11133556778999999999999999999887654
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.4e-26 Score=186.53 Aligned_cols=231 Identities=19% Similarity=0.272 Sum_probs=172.7
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
.|+.||..||||+.||.+|+|+. +|.++.++. |.+||..+.|...+ .++..+.+++..++... ++
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~------------~g 308 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH------------TG 308 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc------------Cc
Confidence 38899999999999999999995 455666664 78999999998754 44444444443333332 23
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
...+.+.-|..+-.++.|-.+ ..|++++.|+.|+++.+...+++..+. +|..+|.++.|.|.+..|++|+.|++++
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred eEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeee---cccCceEEEEECCCCceEEEecCCCeeE
Confidence 344445667777667777654 457899999999999998777776654 6999999999999999999999999999
Q ss_pred EEECCCcceeeee-ecCCceeEEEEccCCC--------eEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccc
Q 024407 159 LWDARTLELIKTY-VTERPVNAVTMSPLLD--------HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 229 (268)
Q Consensus 159 iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h 229 (268)
||.+....+...+ .+...+..+.|+|.+. ..+++++.++ .+..||. ..+.++..+..|
T Consensus 385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-tV~lwdv------------~~gv~i~~f~kH 451 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-TVKLWDV------------ESGVPIHTLMKH 451 (524)
T ss_pred eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-eEEEEEc------------cCCceeEeeccC
Confidence 9998876665554 3556788888888653 2233333332 3344444 444455566789
Q ss_pred ccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 230 FGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 230 ~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
..+|.+++|||+|+|+|+|+.||.|.+|..+.
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 99999999999999999999999999997763
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.2e-25 Score=180.61 Aligned_cols=230 Identities=30% Similarity=0.533 Sum_probs=179.5
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.|+|+++.|++++.|+.|++||+++++....+. +...+..+.+.+...+++++.. ++.+.++++. ..+
T Consensus 58 ~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~i~~~~~~------~~~ 126 (289)
T cd00200 58 AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR-----DKTIKVWDVE------TGK 126 (289)
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecC-----CCeEEEEECC------CcE
Confidence 378999999999999999999999877777666 3457889999987666665541 2334444432 345
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
+...+.+|...++++.|+|+++++++++.|+.|++||+++++....+. .|...+.++.+++++..+++++.|+.|++
T Consensus 127 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEE
Confidence 667777899999999999998888888889999999999877665544 57789999999999999999999999999
Q ss_pred EECCCcceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 160 WDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 160 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
||++.++.+..+ .+...+..+.++|. ..++++++.+ ..+..|+...+.. ...+..|...|.+++|
T Consensus 204 ~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~i~i~~~~~~~~------------~~~~~~~~~~i~~~~~ 269 (289)
T cd00200 204 WDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSED-GTIRVWDLRTGEC------------VQTLSGHTNSVTSLAW 269 (289)
T ss_pred EECCCCceecchhhcCCceEEEEEcCC-CcEEEEEcCC-CcEEEEEcCCcee------------EEEccccCCcEEEEEE
Confidence 999988877776 45668899999997 4444444422 3455666544332 1223467778999999
Q ss_pred CCCCCeEEeeeCCCeEEEEe
Q 024407 239 NPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 239 sp~~~~lasgs~Dg~i~i~~ 258 (268)
+|++++|++++.||.|++|+
T Consensus 270 ~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 270 SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCCEEEEecCCCeEEecC
Confidence 99999999999999999995
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1e-25 Score=190.86 Aligned_cols=244 Identities=20% Similarity=0.346 Sum_probs=181.8
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
.||||+++|||+.||.||+||.+.+-++.+|. |...+..++|+..++.++.++ +++.+..|++.+-..+.
T Consensus 358 YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS-----LDGtVRAwDlkRYrNfR---- 428 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS-----LDGTVRAWDLKRYRNFR---- 428 (893)
T ss_pred ECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee-----cCCeEEeeeecccceee----
Confidence 58999999999999999999999999998886 677899999998877666543 67777777776532211
Q ss_pred EEEEecCC-CCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 81 VLILKGPQ-GRINRAVWGPLNRTIISAGEDA-IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 81 ~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
.+.... -...+++..|.|..+.+|+.|. .|++|++.+|+.+-.+ .||.+||.++.|+|+++.|+++++|.+||
T Consensus 429 --Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL---sGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 429 --TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL---SGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred --eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh---cCCCCcceeeEEccccCeEEeccccceEE
Confidence 122221 2357888999999999998875 5999999999876544 58999999999999999999999999999
Q ss_pred EEECCCc-ceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeeh----hhhh-----hhccccc
Q 024407 159 LWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK----ILQE-----EIGGVKG 228 (268)
Q Consensus 159 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~-----~~~~~~~ 228 (268)
+||+-.. ..+.++.....+..++++|+++.++++.-++ .+..||........ ..+. ..+. ....-..
T Consensus 504 iW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldg--qItf~d~~~~~q~~-~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 504 IWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDG--QITFFDIKEAVQVG-SIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred EEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecc--eEEEEEhhhceeec-cccchhhccccccccceeehhhcc
Confidence 9997543 3556677777899999999999988876554 45555543222110 0000 0000 0001112
Q ss_pred cccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 229 HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.....+.+.||+||++|++||....|.||+++..
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 2346899999999999999999999999999865
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=182.67 Aligned_cols=245 Identities=18% Similarity=0.292 Sum_probs=174.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcE---EEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQ---LFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
||++|++|||||.|.|.-+|.+..-.. ..++ .|..++..+.|+|++..++++... ..+..|+ -.+
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~-----e~~~lwD------v~t 300 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD-----EVLSLWD------VDT 300 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch-----Hheeecc------CCc
Confidence 899999999999999999999855433 3333 378899999999998877765432 1122222 234
Q ss_pred CceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 78 GESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 78 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
+...+.++ ++...+.+++|.|||..+++|+.|+.+.+||+.-+..-.... --...|.+++.++||.++++.+.|..
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~g---vr~~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEG---VRDPKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccc---cccceeEEEEEcCCCcEEEEEecccc
Confidence 45555443 445788999999999999999999999999997542211110 11245899999999999999999999
Q ss_pred EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccC------------CCee--------------
Q 024407 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR------------AGKF-------------- 210 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~------------~~~~-------------- 210 (268)
|++++..+.........+.++.+.+.+.++.++++.-... .+..||.. .+.+
T Consensus 378 i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q--ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ--EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred eeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccC--eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence 9999988766555555566777777777666555532221 22333321 0111
Q ss_pred -------eeEeeehhhhhhhccccccccceEEEEECCCC-CeEEeeeCCCeEEEEeeCCC
Q 024407 211 -------EAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 211 -------~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+.|++..+..+..+.||+..|+|++|+|.. ..+||||.||+||||...+.
T Consensus 456 aSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 12345555555667789999999999999976 55999999999999987754
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=4.1e-25 Score=180.45 Aligned_cols=244 Identities=21% Similarity=0.371 Sum_probs=175.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEE--EEEe-cCCCceeeeeecCCeEEEEEcCCCcc---------------cccc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQL--FTFN-FDSPARSVDFAVGDKLAVITTDPFME---------------LNSA 63 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 63 (268)
|||.|-++|||...|+||+||....+.+ ..++ ..++|..++|..+++..++...+.-. +.+.
T Consensus 67 ySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~Gh 146 (603)
T KOG0318|consen 67 YSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGH 146 (603)
T ss_pred eCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeecc
Confidence 7999999999999999999997553333 2343 47899999999876554444432111 1110
Q ss_pred eE-----------eeeeeeCCCCC-----CCce---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 024407 64 IH-----------VKRIARDPADQ-----GGES---VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 124 (268)
Q Consensus 64 ~~-----------~~~~~~~~~~~-----~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 124 (268)
.+ -.++....+.. .+.| -..++.|++=|+++.|+|||.+++++|.||.|.+||=.++..+.
T Consensus 147 Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg 226 (603)
T KOG0318|consen 147 SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG 226 (603)
T ss_pred ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE
Confidence 00 01111111111 1111 22356788889999999999999999999999999999999888
Q ss_pred ecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCc----eeEEEEccCCCeEEEeecCCCceE
Q 024407 125 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP----VNAVTMSPLLDHVVLGGGQDASAV 200 (268)
Q Consensus 125 ~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i 200 (268)
.+....+|+..|.+++|+||+..+++++.|.++|+||..+.++++++..... ...+.|.. +.++.....+ .+
T Consensus 227 ~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk--d~lItVSl~G--~i 302 (603)
T KOG0318|consen 227 ELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK--DHLITVSLSG--TI 302 (603)
T ss_pred EecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC--CeEEEEEcCc--EE
Confidence 8877779999999999999999999999999999999999999998865432 23334442 3333322211 12
Q ss_pred EEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 201 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 201 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
.+++...+..+..+.||...|+++..+||+++|.||+.||.|.=|....
T Consensus 303 ------------n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 303 ------------NYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred ------------EEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 2333333334456789999999999999999999999999999997654
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=3.6e-25 Score=202.64 Aligned_cols=235 Identities=16% Similarity=0.200 Sum_probs=171.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCC----c----EEEEEecCCCceeeeeecC-CeEEEEEcCCCcccccceEeeeeeeC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETG----A----QLFTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARD 72 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~----~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (268)
|+|++++|||||.|++|++||+... . ....+....++..+.|++. ...++.++ .++.+.+|++.
T Consensus 491 fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~-----~Dg~v~lWd~~-- 563 (793)
T PLN00181 491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN-----FEGVVQVWDVA-- 563 (793)
T ss_pred ECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe-----CCCeEEEEECC--
Confidence 8999999999999999999997532 1 2233444566778888763 23333222 24455666543
Q ss_pred CCCCCCceEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc-CCCCEEEE
Q 024407 73 PADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFLT 150 (268)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~~~l~s 150 (268)
+++.+..+.+|.+.|+++.|+| ++.+|++|+.|+.|++||+++++.+..+. +...+.++.|. +++.+|++
T Consensus 564 ----~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~----~~~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 564 ----RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK----TKANICCVQFPSESGRSLAF 635 (793)
T ss_pred ----CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe----cCCCeEEEEEeCCCCCEEEE
Confidence 3456778899999999999997 67899999999999999999887766553 33578899985 57899999
Q ss_pred eeCCCcEEEEECCCcc-eeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccc
Q 024407 151 GSLDKSAKLWDARTLE-LIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 228 (268)
Q Consensus 151 ~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
++.|++|++||+++.+ .+..+ .+...+..+.|.+ +..++++ +.++ .+..||.+.+.-. .....+..+.+
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~~~lvs~-s~D~-~ikiWd~~~~~~~------~~~~~l~~~~g 706 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-SSTLVSS-STDN-TLKLWDLSMSISG------INETPLHSFMG 706 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-CCEEEEE-ECCC-EEEEEeCCCCccc------cCCcceEEEcC
Confidence 9999999999998765 23333 3455788888864 3444444 4443 4677776532100 00112345678
Q ss_pred cccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 229 HFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
|...+++++|+|++++||+|+.|+.|++|+..
T Consensus 707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 707 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 98899999999999999999999999999865
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-26 Score=198.61 Aligned_cols=235 Identities=23% Similarity=0.395 Sum_probs=189.7
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
+|+|.-+-++|+-..|+|++||..=++++..|. |++|++.++|||.+.+.+.+.+.+ .+.+|.. .+..
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDy-----kIkVWnY------k~rr 84 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDY-----KIKVWNY------KTRR 84 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCcc-----EEEEEec------ccce
Confidence 599999999999999999999999888888775 899999999999999888777643 5556654 3456
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
++..|.||-+-|..+.|++.-.+++|+|.|.+||||+..+++++..+ .||...|+|..|+|.-..++|+|.|-+||+
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl---tGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL---TGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE---ecCceEEEeeccCCccceEEEecccceEEE
Confidence 78889999999999999999999999999999999999999988765 489999999999998899999999999999
Q ss_pred EECCCcc----------------------------eeeee--ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCe
Q 024407 160 WDARTLE----------------------------LIKTY--VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 209 (268)
Q Consensus 160 wd~~~~~----------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 209 (268)
||+...+ +++.+ .+.+.++.++|+|....++.++ |...+..|...
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~--DDRqVKlWrmn--- 236 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWRMN--- 236 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC--CcceeeEEEec---
Confidence 9964210 01111 2456688899999765444433 33345555432
Q ss_pred eeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 210 FEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
.....++-+..+|.++|.++-|+|.-..++|.|+|++||||+++.
T Consensus 237 -------etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 237 -------ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred -------cccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 122233445679999999999999999999999999999999874
No 38
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.1e-24 Score=185.17 Aligned_cols=244 Identities=18% Similarity=0.238 Sum_probs=175.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEE--------------EEecCCCceeeeeec-CCeEEEEEcCCCcccccceEe
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLF--------------TFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHV 66 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 66 (268)
+++|+..+++++.+..+..|+...+..+. ...|.++|..++|+| ++.+++.++. ++.+.+
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~-----DgtIkI 102 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE-----DGTIMG 102 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC-----CCEEEE
Confidence 45787788999999999999865443321 123567789999998 5554444432 446666
Q ss_pred eeeeeCC-CCCCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC
Q 024407 67 KRIARDP-ADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD 144 (268)
Q Consensus 67 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~ 144 (268)
|++.... ......++..+.+|...|.++.|+|++ +.|++|+.|+.|++||+++++....+ .+|...|.+++|+|+
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---~~h~~~V~sla~spd 179 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI---KCHSDQITSLEWNLD 179 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---cCCCCceEEEEEECC
Confidence 7664321 112235677899999999999999986 68999999999999999998766554 368899999999999
Q ss_pred CCEEEEeeCCCcEEEEECCCcceeeeeecC-C-ceeEEEEccCCCeEEEeecC--CCceEEEeccCCCeeeeEeeehhhh
Q 024407 145 GSHFLTGSLDKSAKLWDARTLELIKTYVTE-R-PVNAVTMSPLLDHVVLGGGQ--DASAVTTTDHRAGKFEAKFFDKILQ 220 (268)
Q Consensus 145 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~ 220 (268)
+.+|++++.|++|++||+++++.+..+... . ....+.|.+....++.++.. ....+..||.+..........
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~---- 255 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD---- 255 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec----
Confidence 999999999999999999998877765432 2 23456788876666654422 235677888764332111110
Q ss_pred hhhccccccccceEEEEECCCCCeEEeee-CCCeEEEEeeCCCc
Q 024407 221 EEIGGVKGHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFDPDY 263 (268)
Q Consensus 221 ~~~~~~~~h~~~v~~~~~sp~~~~lasgs-~Dg~i~i~~~~~~~ 263 (268)
..+...+....|+|++++|++|+ .|+.|++|+++++.
T Consensus 256 ------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 256 ------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 01223566678999999998887 59999999999764
No 39
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=167.45 Aligned_cols=193 Identities=21% Similarity=0.314 Sum_probs=149.8
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|..||+-++|||.||++|+||+......+.+
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~------------------------------------------------- 121 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY------------------------------------------------- 121 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcccchhc-------------------------------------------------
Confidence 7889999999999999999998663322222
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
.|..+|+++..+|+...|++|.++|.|++||+.....-+++.++ -...|.++.+.|||++++.+..-|+..+|+
T Consensus 122 ----~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 122 ----QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWR 195 (311)
T ss_pred ----cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC--CCcceeeEEEcCCCcEEEEecCCccEEEEE
Confidence 24567888888888889999999999999999987655555443 347899999999999999999999999999
Q ss_pred CCCcceee------ee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 162 ARTLELIK------TY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 162 ~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
+-+..... ++ .++..+..+.++|+.++++.++.+....|+..|.. +.. ...+++|...|+
T Consensus 196 l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---~kl----------e~~l~gh~rWvW 262 (311)
T KOG0315|consen 196 LLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---FKL----------ELVLTGHQRWVW 262 (311)
T ss_pred ccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc---eee----------EEEeecCCceEE
Confidence 97743222 22 24567888899999988888776654444433321 111 123578889999
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.++||.||+||+||+.|+++|+|.+...
T Consensus 263 dc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred eeeeccCccEEEecCCCCceeecccccC
Confidence 9999999999999999999999998754
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=2.7e-24 Score=172.84 Aligned_cols=233 Identities=31% Similarity=0.526 Sum_probs=180.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|+++.|++++.|+.+++|++.+++....+. +..++..+.+.+.+..+++++. ++.+.+|++. .++.
T Consensus 17 ~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~~~~------~~~~ 85 (289)
T cd00200 17 FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-----DKTIRLWDLE------TGEC 85 (289)
T ss_pred EcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-----CCeEEEEEcC------cccc
Confidence 78999999999999999999999887666555 4556668888887754444432 3445555543 2345
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+..+.+|...+.++.|+|+++.+++++.|+.|++||+++++....+. .|...+.++++++++.++++++.|+.|++|
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 66778898999999999998888888889999999999877665543 588899999999998888888889999999
Q ss_pred ECCCcceeeeeec-CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 161 DARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 161 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
|+++++.+..+.. ...+.++.++|.+..+++++. ...+..||.+.+.. +..+..|...+.+++|+
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~------------~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKC------------LGTLRGHENGVNSVAFS 228 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecC--CCcEEEEECCCCce------------ecchhhcCCceEEEEEc
Confidence 9998777666653 347889999998767776655 23455666554322 22234677789999999
Q ss_pred CCCCeEEeeeCCCeEEEEeeCCC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|++.++++++.||.|++|+++..
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCc
Confidence 99999999998999999998743
No 41
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.1e-24 Score=175.85 Aligned_cols=229 Identities=26% Similarity=0.477 Sum_probs=180.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCc-eeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+..|.+|+|++.|+|+-+||..+++....+..+..+ ..+.|...+.++..+.+ ..+.+..+.. -.|
T Consensus 284 Wnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td------~~i~V~kv~~------~~P 351 (524)
T KOG0273|consen 284 WNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTD------GCIHVCKVGE------DRP 351 (524)
T ss_pred EcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCC------ceEEEEEecC------CCc
Confidence 6789999999999999999999999888888765554 66888777766654443 3444544432 246
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC---------EEEEe
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS---------HFLTG 151 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~---------~l~s~ 151 (268)
+..+.||+++|.++.|+|.|..|+++|.|++++||.+........+. +|...|..+.++|++. .++++
T Consensus 352 ~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---~Hskei~t~~wsp~g~v~~n~~~~~~l~sa 428 (524)
T KOG0273|consen 352 VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---AHSKEIYTIKWSPTGPVTSNPNMNLMLASA 428 (524)
T ss_pred ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh---hhccceeeEeecCCCCccCCCcCCceEEEe
Confidence 77889999999999999999999999999999999988876665554 7999999999999654 68999
Q ss_pred eCCCcEEEEECCCcceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccc
Q 024407 152 SLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 230 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~ 230 (268)
+.|++|++||...+.++.++ .+..++.+++++|++.+++.+ +.++ .+-.|+.+.+... +.+.+ .
T Consensus 429 s~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG-s~dg-~V~iws~~~~~l~------------~s~~~-~ 493 (524)
T KOG0273|consen 429 SFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG-SLDG-CVHIWSTKTGKLV------------KSYQG-T 493 (524)
T ss_pred ecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEec-CCCC-eeEeccccchhee------------EeecC-C
Confidence 99999999999999999998 578899999999998766554 3333 3455665554432 11222 3
Q ss_pred cceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 231 GPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 231 ~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+.|..+.|+.+|..|..+-.||.+.+-.++
T Consensus 494 ~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 494 GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 569999999999999988899999887654
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-24 Score=163.82 Aligned_cols=231 Identities=15% Similarity=0.282 Sum_probs=169.4
Q ss_pred CCCC-CCEEEEeecCCcEEEeecCCCcE---EEEE--ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 2 FQAN-SMTLITGSADQTAKLWNVETGAQ---LFTF--NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 2 fs~d-~~~l~s~s~D~tv~~wd~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
|+|- |.+|||||.|+.||+|+...+.. ...+ .|...|+.++|+|-++.++.++ .++..-+|. ...
T Consensus 22 whp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS-----FD~t~~Iw~----k~~ 92 (312)
T KOG0645|consen 22 WHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS-----FDATVVIWK----KED 92 (312)
T ss_pred eccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee-----ccceEEEee----cCC
Confidence 6777 78999999999999999985332 2222 2667799999999776544433 122222222 123
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
...+++..|.||..+|.+++|+++|++|++++.|++|=||....+.-........+|...|..+.|+|.-..|+++++|+
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 45678999999999999999999999999999999999999886544444444568999999999999999999999999
Q ss_pred cEEEEECC-C--cceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 156 SAKLWDAR-T--LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 156 ~i~iwd~~-~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
+|++|+-. . -++++++. ++..+.++.|++.+..++.+..+. .+..|... ... ..-|+.
T Consensus 173 TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~--tv~Iw~~~---------~~~-------~~~~sr 234 (312)
T KOG0645|consen 173 TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG--TVSIWRLY---------TDL-------SGMHSR 234 (312)
T ss_pred eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc--ceEeeeec---------cCc-------chhccc
Confidence 99999866 2 24566664 334788899999886665554332 23332211 000 113677
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
.+..++|. ...||||+.|+.|++|+-..
T Consensus 235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 235 ALYDVPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred ceEeeeec--ccceEeccCCCEEEEEEecC
Confidence 89999998 56899999999999997653
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=5.5e-25 Score=168.47 Aligned_cols=229 Identities=22% Similarity=0.367 Sum_probs=172.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC-CCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|.+|+..++|+|.|++|+.||.++|+.++.++.+ .-+..++... +..++..++ .++.+++|++.......+
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs-----dD~t~kl~D~R~k~~~~t-- 170 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS-----DDGTLKLWDIRKKEAIKT-- 170 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecC-----CCceEEEEeecccchhhc--
Confidence 6789999999999999999999999999888754 3355555443 344444333 366778887764322111
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
+ ..+-+++++.|..++..+++|+-|+.|++||++.+.....+ .||..+|+.+..+++|.++++-+.|.++++
T Consensus 171 ----~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~l---sGh~DtIt~lsls~~gs~llsnsMd~tvrv 242 (338)
T KOG0265|consen 171 ----F-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTL---SGHADTITGLSLSRYGSFLLSNSMDNTVRV 242 (338)
T ss_pred ----c-ccceeEEEEEecccccceeeccccCceeeeccccCcceEEe---ecccCceeeEEeccCCCccccccccceEEE
Confidence 1 22446889999999999999999999999999988776655 489999999999999999999999999999
Q ss_pred EECCCc----ceeeeee-----cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccc
Q 024407 160 WDARTL----ELIKTYV-----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 230 (268)
Q Consensus 160 wd~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~ 230 (268)
||.|-. ++++-+. .+.....++|+|.+..+.+++.+ ..+..||.....+ +..++||.
T Consensus 243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d--r~vyvwd~~~r~~------------lyklpGh~ 308 (338)
T KOG0265|consen 243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD--RFVYVWDTTSRRI------------LYKLPGHY 308 (338)
T ss_pred EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccccc--ceEEEeecccccE------------EEEcCCcc
Confidence 999853 3344332 13345677899987766655443 3455666544333 23367999
Q ss_pred cceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 231 GPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 231 ~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
..|++++|+|...+|.+++.|.+|.+=++
T Consensus 309 gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 309 GSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred eeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 99999999999999999999999987543
No 44
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.7e-26 Score=194.98 Aligned_cols=178 Identities=24% Similarity=0.343 Sum_probs=133.6
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCc
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKS 156 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~ 156 (268)
.+|++.++||.+.|.++.|+. .++|+++|.|++||+|++....+++.+. |...|+||+|.| |.+|+++|+.|+.
T Consensus 359 ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~----HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS----HNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred ccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe----cCCeeEEEEecccCCCcEeecccccc
Confidence 478888999999999999997 4688999999999999999988888775 999999999998 7789999999999
Q ss_pred EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee-------------------------
Q 024407 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE------------------------- 211 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------------------------- 211 (268)
++||++...+++.=.....-+.++++.|+|.+.+++.-.+...+. +.+...+.
T Consensus 434 vRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY--~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p 511 (712)
T KOG0283|consen 434 VRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY--DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFP 511 (712)
T ss_pred eEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEE--EccCCeEEEeeeEeeccCccccCceeeeeEecC
Confidence 999999877665443445678999999999888887654433222 21111110
Q ss_pred --------------eEeeehhhhhhhccccccc--cceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 212 --------------AKFFDKILQEEIGGVKGHF--GPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 212 --------------~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+.++.....-+..++|+. ..-....|+.||++|++|++|..|+||+++..
T Consensus 512 ~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 512 GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 0112211111223344443 23467889999999999999999999998654
No 45
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=6.7e-25 Score=168.55 Aligned_cols=237 Identities=19% Similarity=0.278 Sum_probs=169.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+|.++.|+.+|+||++++||.........+++..|+...+|.+..+.+....+ +.++..++.. ...
T Consensus 21 f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~d------g~vr~~Dln~-------~~~ 87 (323)
T KOG1036|consen 21 FSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLD------GQVRRYDLNT-------GNE 87 (323)
T ss_pred EcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccC------ceEEEEEecC-------Ccc
Confidence 788889999999999999999999988888999999999999987776655443 3333333322 223
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
..+..|..+|.++.+.+....+++||+|++|++||.+.....-... ....|.++.. .++.|+.|+.|..+.+||
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v--~g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDV--SGNRLVVGTSDRKVLIYD 161 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc----cCceEEEEec--cCCEEEEeecCceEEEEE
Confidence 3456799999999999988999999999999999998743332222 3346777765 478999999999999999
Q ss_pred CCCcceeeee---ecCCceeEEEEccCCCeEEEeecCCCceEEEeccC----CCeeeeEeeehhhhhhhccccccccceE
Q 024407 162 ARTLELIKTY---VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR----AGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 162 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
+|+.+...+. ....++.++++.|.+...++++-++..++-..|.+ ...+..+.--. ...-..--.+|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~-----~~~~~~~~yPVN 236 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL-----SEKDTEIIYPVN 236 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeec-----ccCCceEEEEec
Confidence 9986543321 12346788999997776776655554444444443 11221111000 000001124799
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+++|+|-.+.||||+.||.|.+|+..+.
T Consensus 237 ai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 237 AIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eeEeccccceEEecCCCceEEEccCcch
Confidence 9999999999999999999999988753
No 46
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=9.4e-24 Score=182.38 Aligned_cols=235 Identities=18% Similarity=0.219 Sum_probs=165.0
Q ss_pred EeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecC-CeEEEEEcCCCcccccceEeeeeeeCCC--CCCCceEEEEec
Q 024407 11 TGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPA--DQGGESVLILKG 86 (268)
Q Consensus 11 s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (268)
+|+.++.+++|++.+...+..+. |..+|..++|+|. +.+++.++ .++.+.+|++..... .....++..+.+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS-----~DgtIrIWDi~t~~~~~~~i~~p~~~L~g 123 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGS-----EDLTIRVWEIPHNDESVKEIKDPQCILKG 123 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEe-----CCCeEEEEECCCCCccccccccceEEeec
Confidence 36678899999987766666665 6778999999985 44444433 244666776653211 111235667889
Q ss_pred CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc
Q 024407 87 PQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 87 ~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~ 165 (268)
|...|+++.|+|++..+ ++++.|++|++||+++++....+. |...|.+++|+++|.+|++++.|+.|++||++++
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 99999999999998764 689999999999999987655442 5578999999999999999999999999999999
Q ss_pred ceeeeeec-CCceeE-----EEEccCCCeEEEeecCCC--ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 166 ELIKTYVT-ERPVNA-----VTMSPLLDHVVLGGGQDA--SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 166 ~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
+.+..+.. ...+.. ..+++++..+++++.++. ..+..||.+...-....+ .+..+.+.+....
T Consensus 200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~---------~ld~~~~~L~p~~ 270 (568)
T PTZ00420 200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM---------SIDNASAPLIPHY 270 (568)
T ss_pred cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE---------EecCCccceEEee
Confidence 88776643 222222 234466666666554442 357788876422111111 1222334444455
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
..+++.++++|+.|+.||+|++..++
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccCCc
Confidence 56678999999999999999998774
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=1.2e-26 Score=181.07 Aligned_cols=222 Identities=17% Similarity=0.332 Sum_probs=169.5
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
|...++||+.|.|||+||.++....+.+ .|.+.+.++++.. .+.+.++ .++.+.+|+. ++++++.+
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGS-----SDsTvrvWDv------~tge~l~t 272 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGS-----SDSTVRVWDV------NTGEPLNT 272 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecC-----CCceEEEEec------cCCchhhH
Confidence 4557999999999999998887666554 4778888888753 3333332 2455666665 56788888
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
+-+|...|..+.|+. .++++++.|.+|.+||+.+...+.......||.+.|+.+.|+ ..++++|+.|.+|++|++.
T Consensus 273 lihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred HhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecc
Confidence 889999999999975 799999999999999999876554333446899999999875 5699999999999999999
Q ss_pred Ccceeeeeec-CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 164 TLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
+.+++.++.. .+.+.++++. +.++++++.+. .|..||. ..+..++.++||..-|.|+.|. .
T Consensus 349 t~efvRtl~gHkRGIAClQYr---~rlvVSGSSDn-tIRlwdi------------~~G~cLRvLeGHEeLvRciRFd--~ 410 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDN-TIRLWDI------------ECGACLRVLEGHEELVRCIRFD--N 410 (499)
T ss_pred ceeeehhhhcccccceehhcc---CeEEEecCCCc-eEEEEec------------cccHHHHHHhchHHhhhheeec--C
Confidence 9999888743 3344444443 45555555543 3444443 3455677889999999999995 4
Q ss_pred CeEEeeeCCCeEEEEeeCC
Q 024407 243 KSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 243 ~~lasgs~Dg~i~i~~~~~ 261 (268)
+-++||+-||+|+||++..
T Consensus 411 krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred ceeeeccccceEEEEeccc
Confidence 6899999999999999863
No 48
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=168.10 Aligned_cols=191 Identities=24% Similarity=0.438 Sum_probs=154.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+.+|..|++|+.|+++++|+++..+.....
T Consensus 28 wn~~g~~lasgs~dktv~v~n~e~~r~~~~~------------------------------------------------- 58 (313)
T KOG1407|consen 28 WNCDGTKLASGSFDKTVSVWNLERDRFRKEL------------------------------------------------- 58 (313)
T ss_pred EcccCceeeecccCCceEEEEecchhhhhhh-------------------------------------------------
Confidence 7889999999999999999998766332211
Q ss_pred EEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 82 LILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
..++|++.|..++|+|-. ..|++++.|.+|++||.+++++...+. -...-..+.++|+|.+++.++.|..|.+.
T Consensus 59 -~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~----~~~eni~i~wsp~g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 59 -VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE----TKGENINITWSPDGEYIAVGNKDDRITFI 133 (313)
T ss_pred -cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee----ccCcceEEEEcCCCCEEEEecCcccEEEE
Confidence 135788888888988754 689999999999999999999887664 34556678999999999999999999999
Q ss_pred ECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC
Q 024407 161 DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240 (268)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 240 (268)
|.|+.+...........+.+.|+.....+++..|.+.. +...|+ ..+.+..+++|+..+.|+.|+|
T Consensus 134 d~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v------------~ILsyp--sLkpv~si~AH~snCicI~f~p 199 (313)
T KOG1407|consen 134 DARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV------------EILSYP--SLKPVQSIKAHPSNCICIEFDP 199 (313)
T ss_pred EecccceeehhcccceeeeeeecCCCCEEEEecCCceE------------EEEecc--ccccccccccCCcceEEEEECC
Confidence 99998887776666678888988777777776554322 222222 2334567899999999999999
Q ss_pred CCCeEEeeeCCCeEEEEeeC
Q 024407 241 DGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 241 ~~~~lasgs~Dg~i~i~~~~ 260 (268)
+|+|||+|++|..+-+|+++
T Consensus 200 ~GryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 200 DGRYFATGSADALVSLWDVD 219 (313)
T ss_pred CCceEeeccccceeeccChh
Confidence 99999999999999999876
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=8e-25 Score=172.29 Aligned_cols=233 Identities=23% Similarity=0.389 Sum_probs=176.0
Q ss_pred CCEEEEeecCCcEEEeecCCCcEEEEE-----ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeC--------
Q 024407 6 SMTLITGSADQTAKLWNVETGAQLFTF-----NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD-------- 72 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 72 (268)
...|+|||.|.|+++|..+.++..... .|..++.++...+.+..++.++ .++.+.+|...+.
T Consensus 159 ~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS-----~D~~lkiWs~~~~~~~~~E~~ 233 (423)
T KOG0313|consen 159 SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS-----WDTMLKIWSVETDEEDELESS 233 (423)
T ss_pred cceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec-----ccceeeecccCCCcccccccc
Confidence 346999999999999999887654332 4667788888666555444433 2233333331111
Q ss_pred -----------CCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEE
Q 024407 73 -----------PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 141 (268)
Q Consensus 73 -----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~ 141 (268)
.......|+..+.||..+|.++.|++ ...++++|+|.+|+.||+.+++....+. .....+++++
T Consensus 234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~----~~ksl~~i~~ 308 (423)
T KOG0313|consen 234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT----TNKSLNCISY 308 (423)
T ss_pred chhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee----cCcceeEeec
Confidence 11223577888999999999999998 7788999999999999999998776554 4578999999
Q ss_pred cCCCCEEEEeeCCCcEEEEECCCcc--eeee-e-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeeh
Q 024407 142 AADGSHFLTGSLDKSAKLWDARTLE--LIKT-Y-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 217 (268)
Q Consensus 142 s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 217 (268)
++....|++++.|..|++||+|++. .+.. + .+..-+.++.|+|...+.+++++.|+. +..||.|...-
T Consensus 309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~k~------- 380 (423)
T KOG0313|consen 309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRSTKA------- 380 (423)
T ss_pred ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccCCC-------
Confidence 9999999999999999999999853 3222 2 344568889999999999998888864 67777765332
Q ss_pred hhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 218 ILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
.+..+.+|.+.|.++.|+ ++.+|+|||.|.+|+|++..+
T Consensus 381 ----plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 381 ----PLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred ----cceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 233456889999999996 578999999999999997653
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=2e-23 Score=191.18 Aligned_cols=240 Identities=17% Similarity=0.236 Sum_probs=168.1
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+| ++.+|+|++.|++|++||+.+++.+..+. |...+.+++|++ ++.+++.++. ++.+.+|++. ++
T Consensus 540 ~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----Dg~v~iWd~~------~~ 608 (793)
T PLN00181 540 WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----DGSVKLWSIN------QG 608 (793)
T ss_pred eccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----CCEEEEEECC------CC
Confidence 444 47889999999999999999988877775 677899999997 4444444332 3455666653 23
Q ss_pred ceEEEEecCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCce-eeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 79 ESVLILKGPQGRINRAVWG-PLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
..+..+..+ ..|.++.|+ +++.+|++|+.||.|++||+++.+. +..+ .+|...|.++.|. ++.++++++.|++
T Consensus 609 ~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~---~~h~~~V~~v~f~-~~~~lvs~s~D~~ 683 (793)
T PLN00181 609 VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM---IGHSKTVSYVRFV-DSSTLVSSSTDNT 683 (793)
T ss_pred cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe---cCCCCCEEEEEEe-CCCEEEEEECCCE
Confidence 455556544 578999995 5789999999999999999987652 2222 3799999999996 7889999999999
Q ss_pred EEEEECCCc------ceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeee-Eeeehhhhhhhccccc
Q 024407 157 AKLWDARTL------ELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-KFFDKILQEEIGGVKG 228 (268)
Q Consensus 157 i~iwd~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~ 228 (268)
|++||++.. ..+..+. +...+..+.++|.+.++++++ .+ ..+..|+........ ..+.......-.....
T Consensus 684 ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D-~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 684 LKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ET-NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred EEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CC-CEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 999999843 3344443 345677889999876554443 33 345566644332111 0111000000001234
Q ss_pred cccceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 229 HFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
|...|.+++|+|++..|++|+.||.|+||++
T Consensus 762 ~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 762 ASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 5567999999999999999999999999986
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=6.1e-25 Score=177.69 Aligned_cols=231 Identities=21% Similarity=0.314 Sum_probs=174.5
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
+|+++|..|+|+|.|+++|+||+++|+.+..+..+..+.++.++|.+ ++++++.. ++.+..|++. .++
T Consensus 265 ~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~s-----d~ki~~wDiR------s~k 333 (503)
T KOG0282|consen 265 SFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGS-----DKKIRQWDIR------SGK 333 (503)
T ss_pred hccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecC-----CCcEEEEecc------chH
Confidence 69999999999999999999999999999999999999999999976 55555432 3344445543 445
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
-++.+..|-+.|..+.|-|+|+++++.+.|++++||+.+.+-.+..+... +.....++..+|.+.++++-+.|+.|.+
T Consensus 334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~i 411 (503)
T KOG0282|consen 334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAI 411 (503)
T ss_pred HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch--hhccCcceecCCCCCeehhhccCceEEE
Confidence 56667788899999999999999999999999999999887555433222 2334556788999999999999999999
Q ss_pred EECCCcc------eeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 160 WDARTLE------LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 160 wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
|.....- ...-.....-...+.++|++.+++.+.++ +.+..||.++ ...+..+++|..+|
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd--G~v~~wdwkt------------~kl~~~lkah~~~c 477 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD--GKVNFWDWKT------------TKLVSKLKAHDQPC 477 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC--ccEEEeechh------------hhhhhccccCCcce
Confidence 9865321 11111122335678899988766554333 3344454332 23345678899999
Q ss_pred EEEEECCCCCe-EEeeeCCCeEEEEe
Q 024407 234 NALAFNPDGKS-FSSGGEDGYVRLHH 258 (268)
Q Consensus 234 ~~~~~sp~~~~-lasgs~Dg~i~i~~ 258 (268)
..+.|+|.... +|||+.||.|++|+
T Consensus 478 i~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 478 IGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEEecCCCcceeEecccCceeEecC
Confidence 99999998754 99999999999994
No 52
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.6e-24 Score=171.31 Aligned_cols=231 Identities=20% Similarity=0.326 Sum_probs=173.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE-ecCCCceeeeeecCCeEEEEEc-CCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|+|+...++++|.|..|++|........... .|.+++..+..+|.+..++.++ ++.+ ...+ ..++.
T Consensus 269 ~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w------~Fsd------~~~g~ 336 (506)
T KOG0289|consen 269 FHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW------AFSD------ISSGS 336 (506)
T ss_pred eccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceE------EEEE------ccCCc
Confidence 7899999999999999999998766544444 4789999999999766555544 3321 1111 13344
Q ss_pred eEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 80 SVLILKG--PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 80 ~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.+..... ..-.++++.|+|||-.|.+|..|+.|+|||+..+.....+ .+|.++|..++|+.+|.+|++++.|+.|
T Consensus 337 ~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F---pght~~vk~i~FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 337 QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF---PGHTGPVKAISFSENGYWLATAADDGSV 413 (506)
T ss_pred EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC---CCCCCceeEEEeccCceEEEEEecCCeE
Confidence 4444433 2235899999999999999999999999999987755544 4799999999999999999999999999
Q ss_pred EEEECCCcceeeeeecCC--ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 158 KLWDARTLELIKTYVTER--PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
++||+|..+..+++..+. .+..+.+.+.+.++.+++.+ ..+...+.... -|. ++..+..|++..+.
T Consensus 414 ~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~--l~Vy~~~k~~k-----~W~-----~~~~~~~~sg~st~ 481 (506)
T KOG0289|consen 414 KLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD--LQVYICKKKTK-----SWT-----EIKELADHSGLSTG 481 (506)
T ss_pred EEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce--eEEEEEecccc-----cce-----eeehhhhcccccce
Confidence 999999988877776544 58899999998887776332 22222222211 121 12234557778999
Q ss_pred EEECCCCCeEEeeeCCCeEEEEee
Q 024407 236 LAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 236 ~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
+.|..+.+++++||.|..++++-+
T Consensus 482 v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 482 VRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeecccceEEeeccchhheEEeec
Confidence 999999999999999999988754
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.3e-25 Score=164.35 Aligned_cols=227 Identities=19% Similarity=0.275 Sum_probs=169.0
Q ss_pred CCEEEEeecCCcEEEeecCCC-cEEEEEe-cCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE
Q 024407 6 SMTLITGSADQTAKLWNVETG-AQLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
.+.+++|++||++|+||+... .++..++ |..+|.++++.+-. ..++++ ..++.++.|... ..+.+.
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts-----SWD~TiKLW~~~------r~~Sv~ 141 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS-----SWDGTIKLWDPN------RPNSVQ 141 (311)
T ss_pred cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee-----ccCCceEeecCC------CCcceE
Confidence 457999999999999996432 3444443 67789999988733 333332 245566666543 345678
Q ss_pred EEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc-CCCCEEEEeeCCCcEEEE
Q 024407 83 ILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~~~l~s~~~d~~i~iw 160 (268)
++.||...|+...|+|.. +.++++|.|+++++||++.......+ +.|..++.++.|+ .+.+.++|++.|+.|+.|
T Consensus 142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i---~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI---EAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE---EeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 899999999999999964 78899999999999999875332323 4699999999998 477789999999999999
Q ss_pred ECCCcce-eeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 161 DARTLEL-IKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 161 d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
|+|+.+. +..+ .++..+..+.++|....++++++.|... ..||... ....+++...|++.|..+.|
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~-riw~~~~-----------~ds~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTV-RIWDPER-----------QDSAIETVDHHTEFVCGLDW 286 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceE-Eeccccc-----------chhhhhhhhccceEEecccc
Confidence 9998542 2222 3566889999999988888888777542 3333221 11223445679999999999
Q ss_pred CC-CCCeEEeeeCCCeEEEEe
Q 024407 239 NP-DGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 239 sp-~~~~lasgs~Dg~i~i~~ 258 (268)
|+ +..++|+++.|+.++||+
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccccCceeeecccccceeeec
Confidence 98 567899999999999996
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=4.9e-24 Score=180.66 Aligned_cols=162 Identities=25% Similarity=0.359 Sum_probs=137.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 167 (268)
...|.++.+||||++|+.+=-|+++++|=+++-+..-.+ .||.-||.++.+|||++.++||+.|.+|++|-+.-|.|
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL---YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL---YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee---cccccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence 456899999999999999999999999999886654443 48999999999999999999999999999999999999
Q ss_pred eeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEE
Q 024407 168 IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS 246 (268)
Q Consensus 168 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~la 246 (268)
.+.+. ++..+.++.|-|. .+.++++|.++. + +.|+....+.+.++.+|...|+|++.+|+|.+++
T Consensus 585 HKS~fAHdDSvm~V~F~P~-~~~FFt~gKD~k-v------------KqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 585 HKSFFAHDDSVMSVQFLPK-THLFFTCGKDGK-V------------KQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred hhhhhcccCceeEEEEccc-ceeEEEecCcce-E------------EeechhhhhhheeeccchheeeeeEEcCCCCeEE
Confidence 88864 6778999999994 666666666643 3 3454444566788899999999999999999999
Q ss_pred eeeCCCeEEEEeeCCCccee
Q 024407 247 SGGEDGYVRLHHFDPDYFNI 266 (268)
Q Consensus 247 sgs~Dg~i~i~~~~~~~~~~ 266 (268)
|+|.|..||+|....|...+
T Consensus 651 s~shD~sIRlwE~tde~~~l 670 (888)
T KOG0306|consen 651 SSSHDKSIRLWERTDEILIL 670 (888)
T ss_pred eccCCceeEeeeccCcceee
Confidence 99999999999988765443
No 55
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=170.16 Aligned_cols=231 Identities=22% Similarity=0.262 Sum_probs=180.5
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCC-cEEEE-EecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETG-AQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
+|+..|++|+|+|.|-.+++||.++. +++.. ..+..-+.++.+-|-+..++.++ -+..+..|.. .++
T Consensus 157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s-----rD~tik~We~------~tg 225 (406)
T KOG0295|consen 157 SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS-----RDNTIKAWEC------DTG 225 (406)
T ss_pred EEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc-----cccceeEEec------ccc
Confidence 47889999999999999999998763 33332 34666788888888554333222 2334455544 466
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC----------C---
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD----------G--- 145 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~----------~--- 145 (268)
.++..+.+|...|..+..+.||..+++++.|.++++|-+.++++...+. +|+-+|.+++|.|. +
T Consensus 226 ~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~ 302 (406)
T KOG0295|consen 226 YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTN 302 (406)
T ss_pred eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh---ccccceEEEEecccccCcchhhccCCCC
Confidence 7889999999999999999999999999999999999998875443332 58888888887663 2
Q ss_pred --CEEEEeeCCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhh
Q 024407 146 --SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 222 (268)
Q Consensus 146 --~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 222 (268)
.++.+++.|++|++||+.++.++.++. +..-+..++++|.|.+++.+..+. .+..||.+.+..
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk--tlrvwdl~~~~c------------ 368 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK--TLRVWDLKNLQC------------ 368 (406)
T ss_pred CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC--cEEEEEecccee------------
Confidence 378999999999999999999998875 556789999999988888775443 456666555443
Q ss_pred hccccccccceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 223 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 223 ~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
...+..|...|++++|+.+..+++||+-|.++++|..
T Consensus 369 mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 369 MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 3445678889999999999999999999999999975
No 56
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.5e-24 Score=164.94 Aligned_cols=166 Identities=23% Similarity=0.340 Sum_probs=119.0
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-----LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
+...+..-+.++.+|+|+.+++++..-.|++|..--++ .+.......||++.|..++|++++..+++++.||+++
T Consensus 224 idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr 303 (420)
T KOG2096|consen 224 IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR 303 (420)
T ss_pred eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence 33345556788999999999999999999999864321 1222234579999999999999999999999999999
Q ss_pred EEECCCc-------ceeeee-----ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccc
Q 024407 159 LWDARTL-------ELIKTY-----VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV 226 (268)
Q Consensus 159 iwd~~~~-------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 226 (268)
+||..-. ..++.. ........++++|.++.++++.+.+-..... +.+.. ++. .+
T Consensus 304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s---e~g~~----~~~--~e----- 369 (420)
T KOG2096|consen 304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS---EDGKD----YPE--LE----- 369 (420)
T ss_pred EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc---ccCcc----chh--HH-----
Confidence 9997521 111111 1223456899999999888887765332222 22221 111 11
Q ss_pred cccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCcc
Q 024407 227 KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 264 (268)
Q Consensus 227 ~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~ 264 (268)
..|...|.+++|+|+|+++||++ |..+|+.+.-+++.
T Consensus 370 ~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg~~ 406 (420)
T KOG2096|consen 370 DIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPGWH 406 (420)
T ss_pred HhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCchh
Confidence 24888999999999999999988 88999998666653
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=5.8e-25 Score=169.32 Aligned_cols=237 Identities=19% Similarity=0.334 Sum_probs=175.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEE---EEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLF---TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+|-+.+|+|||.|++||++|..+....+ .++-.++++++.|||++.+++++.+- ..+++.++.+-.-+...
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH-----p~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH-----PTLRLYDVNTYQCFVSA 254 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC-----CceeEEeccceeEeeec
Confidence 89999999999999999999997654333 34457889999999999888887642 22233322211000000
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcc-cceEEEEEcCCCCEEEEeeCCCcE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-KTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.| -.+|++.|+++.+++.++..++|++||.|++||=.+++++..+.. .|. +.|.+..|..++.++++.+.|..+
T Consensus 255 nP---d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~--AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 255 NP---DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN--AHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred Cc---ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh--hcCCceeeeEEEccCCeEEeecCCccee
Confidence 01 136899999999999999999999999999999999988877753 564 578999999999999999999999
Q ss_pred EEEECCCcceeeeeecCC------ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 158 KLWDARTLELIKTYVTER------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
++|.+-+++++..+.... ......|+...+++++ .......+..||.|+..-.. ++ ..+|.+
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~-pDEas~slcsWdaRtadr~~-l~----------slgHn~ 397 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLF-PDEASNSLCSWDARTADRVA-LL----------SLGHNG 397 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEc-cccccCceeeccccchhhhh-hc----------ccCCCC
Confidence 999999999988874321 1223344444444443 34444556677766543211 11 237999
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.|.++.=||.+..|++||.|-.+|+|.=+
T Consensus 398 a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 398 AVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CceEEEeCCCCCceeeecccceeeeeeec
Confidence 99999999999999999999999999543
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=9.1e-25 Score=176.71 Aligned_cols=233 Identities=24% Similarity=0.385 Sum_probs=168.9
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCC-CcEEEEEe-cCCCceeeeeecCCeEEE-EEcCCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVET-GAQLFTFN-FDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
|.| -+.+|+|||.|+.|+||++-+ +++++.+. |..+|+.+.|+..+..++ ++-+ ..++.|+. ++
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD------~~lKlwDt------ET 289 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD------RFLKLWDT------ET 289 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc------eeeeeecc------cc
Confidence 344 778999999999999999865 77888775 678899999998654444 3333 34444443 45
Q ss_pred CceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 78 GESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
|..+..+.- ...++++.|+|++ +.+++|+.|+.|+-||+++++.+.... .|-..|..+.|-+++.++++++.|++
T Consensus 290 G~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---~hLg~i~~i~F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 290 GQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---RHLGAILDITFVDEGRRFISSSDDKS 365 (503)
T ss_pred ceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---hhhhheeeeEEccCCceEeeeccCcc
Confidence 566554432 2357899999999 788999999999999999998776554 57889999999999999999999999
Q ss_pred EEEEECCCcceeeeee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccc--cc
Q 024407 157 AKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF--GP 232 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~--~~ 232 (268)
+++|+.+....++.+. ....+.++..+|++..++.=+-+...++.....+ + .........||. +-
T Consensus 366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~---~--------r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP---F--------RLNKKKRFEGHSVAGY 434 (503)
T ss_pred EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc---c--------ccCHhhhhcceeccCc
Confidence 9999998876555432 2346778889998765554333332222221111 0 011112345665 33
Q ss_pred eEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 233 INALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
-..+.|||||++|+||+.||.+.+|.+.+
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 45789999999999999999999997763
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=177.08 Aligned_cols=251 Identities=20% Similarity=0.345 Sum_probs=156.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcE----EEEEe--cCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQ----LFTFN--FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~----~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
+.|.|..|+|||.|-+|++||++.... .+.+. -.+.+.+++|++.+ .+++++......+..............
T Consensus 175 ~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG 254 (641)
T KOG0772|consen 175 VDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKG 254 (641)
T ss_pred ecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeecc
Confidence 578899999999999999999975422 22222 24668899999854 444444332222211111111100000
Q ss_pred CCCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeec---------------------------
Q 024407 75 DQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKES--------------------------- 126 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------- 126 (268)
.+-=.-+..-+||...+++.+|+|.. +.|+|++.||++|+||+...+...++
T Consensus 255 DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa 334 (641)
T KOG0772|consen 255 DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAA 334 (641)
T ss_pred chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhh
Confidence 01001123346888888999999877 47788899999999987642211100
Q ss_pred ---------------------ccccCccc--ceEEEEEcCCCCEEEEeeCCCcEEEEECCCcc-eeee---eecCCceeE
Q 024407 127 ---------------------DKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKT---YVTERPVNA 179 (268)
Q Consensus 127 ---------------------~~~~~h~~--~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~---~~~~~~~~~ 179 (268)
....+|.. .|+++.||+||++|++-+.|+++++||+|+.+ ++.. +....+...
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~td 414 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTD 414 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCc
Confidence 00135766 79999999999999999999999999999754 3322 223446678
Q ss_pred EEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 180 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
++|+|....++.+.+..... ..+ .+.||+....+.+..+.-....|..+.|+|.-+.|..|+.||+++|+ |
T Consensus 415 c~FSPd~kli~TGtS~~~~~------~~g--~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy-Y 485 (641)
T KOG0772|consen 415 CCFSPDDKLILTGTSAPNGM------TAG--TLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY-Y 485 (641)
T ss_pred cccCCCceEEEecccccCCC------CCc--eEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE-E
Confidence 89999877666654322210 011 12233332222222222234678999999998888889999999997 4
Q ss_pred CC
Q 024407 260 DP 261 (268)
Q Consensus 260 ~~ 261 (268)
++
T Consensus 486 dp 487 (641)
T KOG0772|consen 486 DP 487 (641)
T ss_pred Cc
Confidence 43
No 60
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=1.3e-23 Score=164.60 Aligned_cols=238 Identities=21% Similarity=0.317 Sum_probs=183.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
||+-..+|++++.|+.||.||++..+.++.+- |-..+.+++.+|...+++.++ -++..++|++.. -.+
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g-----rDst~RvWDiRt------r~~ 269 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG-----RDSTIRVWDIRT------RAS 269 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecC-----CcceEEEeeecc------cce
Confidence 67888999999999999999999988877653 556789999999776665543 356778888764 357
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+..+.||..+|.++.+.|....+++||.|++||+||++.++....+- .|...|.+++..|.-..+++++.|. |+-|
T Consensus 270 V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~dn-ik~w 345 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPDN-IKQW 345 (460)
T ss_pred EEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCcc-ceec
Confidence 89999999999999999999999999999999999999998776553 5889999999999998999999876 8999
Q ss_pred ECCCcceeeeeec-CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 161 DARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 161 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
++-.++.++.+.. ..-+++++.+.+ .+++++ .+.+.+..||.+.|..-... ....+.+.+.+ ...|.+.+|.
T Consensus 346 ~~p~g~f~~nlsgh~~iintl~~nsD--~v~~~G-~dng~~~fwdwksg~nyQ~~---~t~vqpGSl~s-EagI~as~fD 418 (460)
T KOG0285|consen 346 KLPEGEFLQNLSGHNAIINTLSVNSD--GVLVSG-GDNGSIMFWDWKSGHNYQRG---QTIVQPGSLES-EAGIFASCFD 418 (460)
T ss_pred cCCccchhhccccccceeeeeeeccC--ceEEEc-CCceEEEEEecCcCcccccc---cccccCCcccc-ccceeEEeec
Confidence 9988877666432 234566666553 344443 45567788888776542211 11111222222 3569999999
Q ss_pred CCCCeEEeeeCCCeEEEEeeCC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~ 261 (268)
..|.-|+||..|.+|++|.=+.
T Consensus 419 ktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 419 KTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccCceEEeccCCcceEEEeccc
Confidence 9999999999999999997664
No 61
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=6.4e-23 Score=180.15 Aligned_cols=237 Identities=20% Similarity=0.321 Sum_probs=174.1
Q ss_pred CCCCCEEEEee--cCCcEEEeecCCC------------cEEEE-EecCCCceeeeeecCCeEEEEEcCCCcccccceEee
Q 024407 3 QANSMTLITGS--ADQTAKLWNVETG------------AQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 67 (268)
Q Consensus 3 s~d~~~l~s~s--~D~tv~~wd~~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (268)
+||+..++||+ .|+++++|+.+.- +.+.. ..|.+.+.++.|++++..++.+++. ..+.+|
T Consensus 22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD-----~~v~iW 96 (942)
T KOG0973|consen 22 HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD-----RLVMIW 96 (942)
T ss_pred cCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc-----ceEEEe
Confidence 79999999999 9999999997421 11222 3478889999999988877777764 333444
Q ss_pred eeee-----C-------CCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccc
Q 024407 68 RIAR-----D-------PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT 135 (268)
Q Consensus 68 ~~~~-----~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 135 (268)
.... . ..-+.=+....+.+|...|.+++|+|++.+|+++|.|++|.+|+.++.+.++.+. +|++.
T Consensus 97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~---~H~s~ 173 (942)
T KOG0973|consen 97 ERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR---GHQSL 173 (942)
T ss_pred eecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee---ccccc
Confidence 3331 0 0111224677899999999999999999999999999999999999986666554 79999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee-------cCCceeEEEEccCCCeEEEeecCCCc--eEEEeccC
Q 024407 136 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-------TERPVNAVTMSPLLDHVVLGGGQDAS--AVTTTDHR 206 (268)
Q Consensus 136 v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~ 206 (268)
|..+.|.|-|.+|++-+.|++|++|+.....+.+.+. .......+.|+|+|.+++...+-.+. .+...+..
T Consensus 174 VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~ 253 (942)
T KOG0973|consen 174 VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG 253 (942)
T ss_pred ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence 9999999999999999999999999977655555442 12346789999999887764322211 11221111
Q ss_pred CCeeeeEeeehhhhhhhccccccccceEEEEECCC-----CC------------eEEeeeCCCeEEEEee
Q 024407 207 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD-----GK------------SFSSGGEDGYVRLHHF 259 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-----~~------------~lasgs~Dg~i~i~~~ 259 (268)
. |.. -..+-||..++.+++|+|. .+ .+|+||+|++|-||..
T Consensus 254 t-------Wk~-----~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 254 T-------WKV-----DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred C-------cee-----eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 1 110 0135689999999999982 12 5899999999999965
No 62
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.9e-22 Score=154.85 Aligned_cols=236 Identities=17% Similarity=0.246 Sum_probs=165.0
Q ss_pred CCCC-CCCEEEEeecCCcEEEeecCCC-cEEE--EEecCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 1 MFQA-NSMTLITGSADQTAKLWNVETG-AQLF--TFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 1 ~fs~-d~~~l~s~s~D~tv~~wd~~~~-~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
.||| ...+|+.+|+|++||+|+++.. ..+- ...+++|+.+++|+.++ ++++.+++ +..++|++..
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D------k~~k~wDL~S---- 103 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD------KQAKLWDLAS---- 103 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC------CceEEEEccC----
Confidence 4899 5566779999999999999873 3322 33578999999999855 44444444 4556666543
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLNR--TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
+ ++..+..|.++|..+.|-+... .|+|||+|++|++||++..+.+..+. -+..+.++++. ..+++.+..
T Consensus 104 --~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~----LPeRvYa~Dv~--~pm~vVata 174 (347)
T KOG0647|consen 104 --G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ----LPERVYAADVL--YPMAVVATA 174 (347)
T ss_pred --C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee----ccceeeehhcc--CceeEEEec
Confidence 2 5666788999999999876554 78999999999999999988877665 35666666543 457889999
Q ss_pred CCcEEEEECCCcceeeeee---cCCceeEEEEccCCCeEEEeecCCCceEEEeccC--CCeeeeEeeehhhhhhhccccc
Q 024407 154 DKSAKLWDARTLELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVKG 228 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
++.|.+|+|+++..+.+.. ....+.+++..++.+..++++-.+...+...|.. ...+..+.- +.++ ...+
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCH---R~~~--~~~~ 249 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCH---RSTN--SVND 249 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEe---ccCC--CCCC
Confidence 9999999998865433321 2335678888877777777766555555544443 222211110 0000 0111
Q ss_pred cccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 229 HFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.-..|++++|+|....|+|+|.||++.+|+-+
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecch
Confidence 12469999999999999999999999999754
No 63
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.91 E-value=3.3e-22 Score=152.89 Aligned_cols=206 Identities=22% Similarity=0.334 Sum_probs=163.3
Q ss_pred cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 024407 34 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 113 (268)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 113 (268)
|..+|.++.|+++.+.++.++ +++.+-+|+. .++..++.++-...+|..++|+|.|+.+++||-|+..-
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaS-----qDGklIvWDs------~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSAS-----QDGKLIVWDS------FTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred cccceeeeEecCCcCeEEeec-----cCCeEEEEEc------ccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 678899999999877665544 3344445543 34456777888899999999999999999999999999
Q ss_pred EEECCCC--c-eeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeE
Q 024407 114 IWDTETG--K-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHV 189 (268)
Q Consensus 114 iwd~~~~--~-~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 189 (268)
||++.+. . .+.......+|...+.++.|.. ..+|+|++.|.+.-+||+.+++.+..+. +...+.++++.|.....
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 9999864 1 1122223468999999999977 5689999999999999999998887764 56689999999966667
Q ss_pred EEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCcc
Q 024407 190 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 264 (268)
Q Consensus 190 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~ 264 (268)
+++++.+.. ...||.|.+. ..+...+|.+.|+++.|.|+|.-|+|||.|+++|+|+++-++.
T Consensus 202 FvSg~cD~~-aklWD~R~~~------------c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 202 FVSGGCDKS-AKLWDVRSGQ------------CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred EEecccccc-eeeeeccCcc------------eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence 777766643 4566666554 3445678999999999999999999999999999999998754
No 64
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=1.2e-22 Score=172.03 Aligned_cols=240 Identities=20% Similarity=0.274 Sum_probs=182.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
+.|+.+.|+.|+..+.+|++++.+......-.|.+.+.+++....+.+++.++ .++.+.+|++ +.......++
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~s-----KD~svilWr~--~~~~~~~~~~ 404 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGS-----KDKSVILWRL--NNNCSKSLCV 404 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEec-----CCceEEEEEe--cCCcchhhhh
Confidence 46888999999999999999999887775556778888888443333333322 3567777877 2223334456
Q ss_pred EEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecc------cccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 82 LILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESD------KETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
....||+..|.+++++-.+ ..|+++|.|+++++|++...+.-.... ..-.|...|++|+++|+...++|||.|
T Consensus 405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD 484 (775)
T KOG0319|consen 405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD 484 (775)
T ss_pred hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence 6678999999999997766 588999999999999997622111100 113699999999999999999999999
Q ss_pred CcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 155 KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
++.++|++...+.+..+. |.+.+.++.|+|.+..++.++++. .+..|.. ....+++++.||+..|
T Consensus 485 ktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~--TvKIW~i------------s~fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 485 KTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK--TVKIWSI------------STFSCLKTFEGHTSAV 550 (775)
T ss_pred cceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc--eEEEEEe------------ccceeeeeecCcccee
Confidence 999999999877777764 566899999999865555554443 3333332 2345667788999999
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+.|-.+++.|+|++.||.|++|++..+
T Consensus 551 lra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 551 LRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred EeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 99999999999999999999999998754
No 65
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-22 Score=168.84 Aligned_cols=226 Identities=20% Similarity=0.308 Sum_probs=175.9
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
+--+-+++||.|..||+++.++++.+..|+ |+.=++++.+||....++.+++.- .++.|.....+ .+.+
T Consensus 65 aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm-----~iKlW~we~~w-----a~~q 134 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDM-----TIKLWDWENEW-----ACEQ 134 (794)
T ss_pred eccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCcc-----EEEEeeccCce-----eeee
Confidence 344569999999999999999999999998 456699999999988888877632 33444433322 3567
Q ss_pred EEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC--CCEEEEeeCCCcEEE
Q 024407 83 ILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKL 159 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~i 159 (268)
.+.||..-|.+++|+|.. +.++++|-|++|++|.+.+..+...+. +|...|+++.+-+. ..+|+|++.|.+|++
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEE
Confidence 899999999999999954 799999999999999998876655554 89999999998864 469999999999999
Q ss_pred EECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 160 WDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 160 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
||.++..|++++. +...+..+.++|....+ ++++.|+ .+..|...+.+.+. .+.-.-+.|+|++-
T Consensus 212 WDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii-isgsEDG-TvriWhs~Ty~lE~------------tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 212 WDYQTKSCVQTLEGHTNNVSFVFFHPELPII-ISGSEDG-TVRIWNSKTYKLEK------------TLNYGLERVWCIAA 277 (794)
T ss_pred eecchHHHHHHhhcccccceEEEecCCCcEE-EEecCCc-cEEEecCcceehhh------------hhhcCCceEEEEee
Confidence 9999999999986 56678899999976544 4444443 45555544332211 12222357999999
Q ss_pred CCCCCeEEeeeCCCeEEE
Q 024407 239 NPDGKSFSSGGEDGYVRL 256 (268)
Q Consensus 239 sp~~~~lasgs~Dg~i~i 256 (268)
.+.++.++.|...|.|.+
T Consensus 278 ~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 278 HKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cCCCCeEEEeccCCcEEE
Confidence 998888999998888755
No 66
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.6e-22 Score=156.03 Aligned_cols=227 Identities=18% Similarity=0.323 Sum_probs=164.4
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEE-ecCCCceeeeeecCC---eEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGD---KLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.+++++||||.|-||++||+.+..++-.+ .|.+.+..+.|.+.. +++.++-+ +.+.+|+.. .-+
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD------G~i~iw~~~------~W~ 118 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD------GHIIIWRVG------SWE 118 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCC------CcEEEEEcC------CeE
Confidence 37889999999999999999887776655 467888888887643 33333333 333444331 125
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
.+..+++|.+.|+.++.+|.++..++.|.|+.+++||+.+|+....... ....+.|.|+|.|.+++..+.++ |-+
T Consensus 119 ~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L----~~~at~v~w~~~Gd~F~v~~~~~-i~i 193 (362)
T KOG0294|consen 119 LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL----KNKATLVSWSPQGDHFVVSGRNK-IDI 193 (362)
T ss_pred EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc----CCcceeeEEcCCCCEEEEEeccE-EEE
Confidence 6778999999999999999999999999999999999999886554432 22334489999999998888754 889
Q ss_pred EECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE-
Q 024407 160 WDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF- 238 (268)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~- 238 (268)
|-+.+-.....+..+..+.++.|-. ...++.++++ ..+..+|.... .....+.+|.+.|-++.+
T Consensus 194 ~q~d~A~v~~~i~~~~r~l~~~~l~--~~~L~vG~d~-~~i~~~D~ds~------------~~~~~~~AH~~RVK~i~~~ 258 (362)
T KOG0294|consen 194 YQLDNASVFREIENPKRILCATFLD--GSELLVGGDN-EWISLKDTDSD------------TPLTEFLAHENRVKDIASY 258 (362)
T ss_pred EecccHhHhhhhhccccceeeeecC--CceEEEecCC-ceEEEeccCCC------------ccceeeecchhheeeeEEE
Confidence 9988876666555544444444443 3344444444 45555554431 122335689999999883
Q ss_pred -CCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 239 -NPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 239 -sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.|++.||+|+|.||.|+||.++-+
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 578899999999999999999866
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=2.3e-22 Score=173.15 Aligned_cols=223 Identities=25% Similarity=0.444 Sum_probs=166.4
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
-+.+|+|||.|+|+|+||+.++.+...+. +...+..+...+ . ..++ ...++.+.+|++. ++..+..
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~-~~~s----gs~D~tVkVW~v~------n~~~l~l 326 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--F-LLVS----GSRDNTVKVWDVT------NGACLNL 326 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--c-eEee----ccCCceEEEEecc------CcceEEE
Confidence 47899999999999999999999999987 455555554332 1 1121 1246677777764 5678888
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
+.||.++|+++..+ +.++++|++|++|++||+++++.++.+. +|..+|.++.+.+. +++++++.|++|++||++
T Consensus 327 ~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 327 LRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS---GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred eccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec---CCcceEEEEEecCc-ceEEeeeeccceEeecCC
Confidence 99999999999988 7899999999999999999998887664 79999999987655 899999999999999999
Q ss_pred Cc-ceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccc-cccceEEEEECCC
Q 024407 164 TL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPD 241 (268)
Q Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~ 241 (268)
+. +++.++.....+. ..+...+ ..+++++-++ .+..||.. ..+++..+++ |...|.++++.
T Consensus 401 ~~~~c~~tl~~h~~~v-~~l~~~~-~~Lvs~~aD~-~Ik~WD~~------------~~~~~~~~~~~~~~~v~~l~~~-- 463 (537)
T KOG0274|consen 401 TKRKCIHTLQGHTSLV-SSLLLRD-NFLVSSSADG-TIKLWDAE------------EGECLRTLEGRHVGGVSALALG-- 463 (537)
T ss_pred chhhhhhhhcCCcccc-ccccccc-ceeEeccccc-cEEEeecc------------cCceeeeeccCCcccEEEeecC--
Confidence 99 8888776543322 1122222 3444444433 34455443 3444455556 56788888876
Q ss_pred CCeEEeeeCCCeEEEEeeCCCc
Q 024407 242 GKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 242 ~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
...+++++.||++++|+++..-
T Consensus 464 ~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred cceEEEEecCCeeEEEecccCc
Confidence 4578889999999999998763
No 68
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=3.7e-22 Score=160.54 Aligned_cols=252 Identities=20% Similarity=0.284 Sum_probs=171.8
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEE-----------EEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQL-----------FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
+..+++|.+..+.|.|||..+.... .-..|...-.++.|.+.....+++.+ .+..+..|++....
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~----~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS----DDHTICLWDINAES 211 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc----CCCcEEEEeccccc
Confidence 5567899999999999998653221 11224444566777765544333322 23445555554432
Q ss_pred C-CCCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC-CCEEEE
Q 024407 74 A-DQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLT 150 (268)
Q Consensus 74 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s 150 (268)
. .....+...+.+|...|.++.|+|.. ..|++++.|+.+.|||+|++ .........+|.++|++++|.|- +..|||
T Consensus 212 ~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT 290 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILAT 290 (422)
T ss_pred cCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEe
Confidence 2 12234567789999999999999977 57789999999999999963 22222334589999999999985 456789
Q ss_pred eeCCCcEEEEECCCcc-eeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccC-CCeeee-Eeeehhhhhhhccc
Q 024407 151 GSLDKSAKLWDARTLE-LIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR-AGKFEA-KFFDKILQEEIGGV 226 (268)
Q Consensus 151 ~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~-~~~~~~~~~~~~~~ 226 (268)
++.|++|.+||+|+.. ++.++ .++..+..+.|+|....++++++.+.. +..||.. .+.-.. ..-....++-+=.-
T Consensus 291 ~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig~eq~~eda~dgppEllF~H 369 (422)
T KOG0264|consen 291 GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIGEEQSPEDAEDGPPELLFIH 369 (422)
T ss_pred ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccccccChhhhccCCcceeEEe
Confidence 9999999999999853 33333 356789999999999999988887765 4455532 111100 00000001111112
Q ss_pred cccccceEEEEECCCCCe-EEeeeCCCeEEEEeeCCC
Q 024407 227 KGHFGPINALAFNPDGKS-FSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 227 ~~h~~~v~~~~~sp~~~~-lasgs~Dg~i~i~~~~~~ 262 (268)
-||+..|+.+.|+|...+ ++|.++|+.++||++...
T Consensus 370 gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 370 GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 479999999999999877 789999999999999843
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.2e-22 Score=150.24 Aligned_cols=223 Identities=16% Similarity=0.260 Sum_probs=169.6
Q ss_pred cCCcEEEeecCCCcEEE---EEecCCCceeeeeecCC--eEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCC
Q 024407 14 ADQTAKLWNVETGAQLF---TFNFDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 88 (268)
Q Consensus 14 ~D~tv~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (268)
+.|++.+-++...+.+. ++.....+..++|++.. ++++++.++ .+++++.. ...+|++.+++|.
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDG------SLrl~d~~-----~~s~Pi~~~kEH~ 104 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDG------SLRLFDLT-----MPSKPIHKFKEHK 104 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCc------eEEEeccC-----CCCcchhHHHhhh
Confidence 46888898886554444 44557778999998753 334444444 44444422 3456899999999
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEEEECCCcc
Q 024407 89 GRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLE 166 (268)
Q Consensus 89 ~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iwd~~~~~ 166 (268)
.+|.++.|++-. +.++++|+|++|++||...++.++.+ .+|...|...+|+| .++.+++++.|+++++||+|..-
T Consensus 105 ~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf---~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g 181 (311)
T KOG0277|consen 105 REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF---NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG 181 (311)
T ss_pred hheEEeccccccceeEEeeccCCceEeecCCCCcceEee---cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC
Confidence 999999999965 46788899999999999888877765 47999999999998 57789999999999999998642
Q ss_pred eeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC-Ce
Q 024407 167 LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KS 244 (268)
Q Consensus 167 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~ 244 (268)
....+. +..++.++.|+....+++++++-+ ..+..||.+..+. .+.++.+|.-.|..++|||.. ..
T Consensus 182 k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd-~~vr~wDir~~r~-----------pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 182 KFMSIEAHNSEILCCDWSKYNHNVLATGGVD-NLVRGWDIRNLRT-----------PLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred ceeEEEeccceeEeecccccCCcEEEecCCC-ceEEEEehhhccc-----------cceeecCCceEEEEEecCcchhhH
Confidence 222233 445788889998877887776665 4578888775432 234467899999999999976 56
Q ss_pred EEeeeCCCeEEEEeeCCC
Q 024407 245 FSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 245 lasgs~Dg~i~i~~~~~~ 262 (268)
|||++-|=++|||+...+
T Consensus 250 LaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQ 267 (311)
T ss_pred hhhccccceEEecccccc
Confidence 999999999999998743
No 70
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.6e-23 Score=162.25 Aligned_cols=223 Identities=20% Similarity=0.315 Sum_probs=163.0
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEe
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 85 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (268)
..++|||.||.|++||+..-.+...++ +.+.|.++.+.. ..++.++.++ .+..|.+.. .++..+.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDK------tvK~wk~~~-------~p~~til 145 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDK------TVKQWKIDG-------PPLHTIL 145 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCc------ceeeeeccC-------Ccceeee
Confidence 469999999999999999888888887 466899998887 4444554444 333443321 2444443
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC-CCEEEEeeCCCcEEEEECCC
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~iwd~~~ 164 (268)
+ ...+..++-+..+..++|+|. .|-|||.....++.++.. -...+.++.|.|. -+.|++|+.|+.|.+||+|.
T Consensus 146 g-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smsw---G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~ 219 (433)
T KOG0268|consen 146 G-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSW---GADSISSVKFNPVETSILASCASDRSIVLYDLRQ 219 (433)
T ss_pred c-cccccccccccccccccccCc--eeeecccccCCccceeec---CCCceeEEecCCCcchheeeeccCCceEEEeccc
Confidence 3 334555666666678888876 478999988777766653 1345888999884 45678888999999999999
Q ss_pred cceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCe
Q 024407 165 LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244 (268)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 244 (268)
...++++...-..+.++|+| ....++++..| ..+...|.+. ..+.+...++|.+.|.+++|||-|+.
T Consensus 220 ~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED-~nlY~~DmR~-----------l~~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 220 ASPLKKVILTMRTNTICWNP-EAFNFVAANED-HNLYTYDMRN-----------LSRPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CCccceeeeeccccceecCc-cccceeecccc-ccceehhhhh-----------hcccchhhcccceeEEEeccCCCcch
Confidence 99999888777889999999 44555554444 3344444432 22334556789999999999999999
Q ss_pred EEeeeCCCeEEEEeeCCC
Q 024407 245 FSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 245 lasgs~Dg~i~i~~~~~~ 262 (268)
|+|||-|.+||||.++..
T Consensus 287 fvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred hccccccceEEEeecCCC
Confidence 999999999999988754
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.3e-22 Score=163.02 Aligned_cols=235 Identities=22% Similarity=0.324 Sum_probs=175.0
Q ss_pred CCCCCCE-EEEeecCCcEEEeecCCCcEEEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMT-LITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~-l~s~s~D~tv~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|||..++ +|++|. ..+.+|+..+......+ +....+.+++|..++.+++++.+ .+.+++.++. +..
T Consensus 34 fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~-----sG~V~vfD~k------~r~ 101 (487)
T KOG0310|consen 34 FSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE-----SGHVKVFDMK------SRV 101 (487)
T ss_pred cCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC-----cCcEEEeccc------cHH
Confidence 6775544 444433 48999998776554433 35677888999888877665532 2233333321 112
Q ss_pred eEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC-CEEEEeeCCCcE
Q 024407 80 SVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSA 157 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i 157 (268)
.+..+.+|+.+|....|+|.++ .+++|+.|+.+++||+.+...+.. ..+|+..|.+.+++|.. ..++||++||+|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~---l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE---LSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE---ecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 3445789999999999999875 567888899999999998764323 35899999999999864 478899999999
Q ss_pred EEEECCCc-ceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 158 KLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 158 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
++||.|.. +.+.++.++.++..+.+-|.+..++.++|. .+..||...|.... .....|...|+|+
T Consensus 179 rl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn---~vkVWDl~~G~qll-----------~~~~~H~KtVTcL 244 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN---SVKVWDLTTGGQLL-----------TSMFNHNKTVTCL 244 (487)
T ss_pred EEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC---eEEEEEecCCceeh-----------hhhhcccceEEEE
Confidence 99999987 777788899999999999988888877764 46777776554322 2233488899999
Q ss_pred EECCCCCeEEeeeCCCeEEEEeeCCCccee
Q 024407 237 AFNPDGKSFSSGGEDGYVRLHHFDPDYFNI 266 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i~i~~~~~~~~~~ 266 (268)
.+..++.-|+|||.|+.+++|++. +|..+
T Consensus 245 ~l~s~~~rLlS~sLD~~VKVfd~t-~~Kvv 273 (487)
T KOG0310|consen 245 RLASDSTRLLSGSLDRHVKVFDTT-NYKVV 273 (487)
T ss_pred EeecCCceEeecccccceEEEEcc-ceEEE
Confidence 999999999999999999999854 55443
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=2.8e-23 Score=162.29 Aligned_cols=232 Identities=22% Similarity=0.348 Sum_probs=168.5
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
|.+.++|||.|.||++||.++++.+..+- |.+.+..+.|+.+ .+ +.++ .+..+.+|++....+ -....+
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng-~m-vtcS-----kDrsiaVWdm~sps~---it~rrV 315 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG-YM-VTCS-----KDRSIAVWDMASPTD---ITLRRV 315 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC-EE-EEec-----CCceeEEEeccCchH---HHHHHH
Confidence 56789999999999999999999988765 4566777766532 22 3222 355677887764321 123455
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
+.||...|+.+.|+. +++++++.|.+|++|++.++..++.+. +|+..|-|+. ..+..+++|+.|.+|++||..
T Consensus 316 LvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~---gHkRGIAClQ--Yr~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLN---GHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred Hhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhh---cccccceehh--ccCeEEEecCCCceEEEEecc
Confidence 789999999999864 799999999999999999998887765 7888776664 468899999999999999999
Q ss_pred Ccceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 164 TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
.+.++..+. ++.-+.++.|.. +.++. ++.++ .+..||...+.-. +.. ....++..+..|++.|..+.|. .
T Consensus 389 ~G~cLRvLeGHEeLvRciRFd~--krIVS-GaYDG-kikvWdl~aaldp-ra~--~~~~Cl~~lv~hsgRVFrLQFD--~ 459 (499)
T KOG0281|consen 389 CGACLRVLEGHEELVRCIRFDN--KRIVS-GAYDG-KIKVWDLQAALDP-RAP--ASTLCLRTLVEHSGRVFRLQFD--E 459 (499)
T ss_pred ccHHHHHHhchHHhhhheeecC--ceeee-ccccc-eEEEEecccccCC-ccc--ccchHHHhhhhccceeEEEeec--c
Confidence 999888764 455677777764 45554 44443 3556654432211 000 0012445667799999999984 4
Q ss_pred CeEEeeeCCCeEEEEeeCCC
Q 024407 243 KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 243 ~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+++++.|.+|.||++.+.
T Consensus 460 fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 460 FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred eEEEeccCCCeEEEEEcCCC
Confidence 67899999999999998753
No 73
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.3e-22 Score=148.28 Aligned_cols=200 Identities=23% Similarity=0.333 Sum_probs=145.8
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
.|+.|||||.|++||++...+..+ .+++..|
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~-------------------------------------------------s~ll~~L 52 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQ-------------------------------------------------SKLLAEL 52 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCC-------------------------------------------------ceeeeEe
Confidence 478899999999999998654322 1345668
Q ss_pred ecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC--CCEEEEeeCCCcEEEE
Q 024407 85 KGPQGRINRAVWGP--LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLW 160 (268)
Q Consensus 85 ~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~iw 160 (268)
.||+++|..+.|-. .|..|+++++||.|.||...+++- .+......|++.|+++++.|. |-.|++++.||.|.+.
T Consensus 53 ~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl 131 (299)
T KOG1332|consen 53 TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL 131 (299)
T ss_pred cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch-hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence 89999999999965 789999999999999999988743 333334579999999999885 5578999999999999
Q ss_pred ECCCc-c-eeeee--ecCCceeEEEEccCCC-------------eEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhh
Q 024407 161 DARTL-E-LIKTY--VTERPVNAVTMSPLLD-------------HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI 223 (268)
Q Consensus 161 d~~~~-~-~~~~~--~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 223 (268)
+.++. . ...++ .++-.+++++|.|-.. .-++++|.|. .+..|+...+.+. . -
T Consensus 132 ~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn-~VkiW~~~~~~w~--------~--e 200 (299)
T KOG1332|consen 132 TYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN-LVKIWKFDSDSWK--------L--E 200 (299)
T ss_pred EEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc-ceeeeecCCcchh--------h--h
Confidence 98764 1 11111 2445678888887511 2244445443 3444443333221 1 1
Q ss_pred ccccccccceEEEEECCCC----CeEEeeeCCCeEEEEeeCCCcce
Q 024407 224 GGVKGHFGPINALAFNPDG----KSFSSGGEDGYVRLHHFDPDYFN 265 (268)
Q Consensus 224 ~~~~~h~~~v~~~~~sp~~----~~lasgs~Dg~i~i~~~~~~~~~ 265 (268)
..+.+|++.|..++|.|.- -++||||+||++-||.-+.|+..
T Consensus 201 ~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 201 RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 2378999999999999964 35999999999999999987543
No 74
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=4.5e-23 Score=160.00 Aligned_cols=231 Identities=19% Similarity=0.333 Sum_probs=175.7
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe--cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
.||.|+.+|+||+-||.||+|.+++|.+++.|+ |...+.++.|+.++..++.++. +..+++. ....+
T Consensus 270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf-----D~tvRiH------GlKSG 338 (508)
T KOG0275|consen 270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF-----DQTVRIH------GLKSG 338 (508)
T ss_pred eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc-----cceEEEe------ccccc
Confidence 389999999999999999999999999999886 5667899999876544433221 1122222 23467
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSA 157 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i 157 (268)
+++..++||+.-|+.+.|+++|.++++++.||+|++|+.++..+...++.. +...+|+++..-| +.++++.|...++|
T Consensus 339 K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 888889999999999999999999999999999999999998887766543 4567888887665 56789999999999
Q ss_pred EEEECCCcceeeeeec----CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 158 KLWDARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
.+-++. ++.++++.. .....+...+|-++.+.+.+.+. .+.+.....|..+ +.+.-|...|
T Consensus 418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~--vlYCF~~~sG~LE------------~tl~VhEkdv 482 (508)
T KOG0275|consen 418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG--VLYCFSVLSGKLE------------RTLPVHEKDV 482 (508)
T ss_pred EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc--EEEEEEeecCcee------------eeeecccccc
Confidence 999886 466666643 23456677888887766554433 3333333333332 2344577778
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEe
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~ 258 (268)
..++-+|..+.|||=++||.+++|.
T Consensus 483 IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 483 IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccCcccchhhhhcccchhhhcC
Confidence 8899999999999999999999994
No 75
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=1.1e-20 Score=163.49 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=129.1
Q ss_pred ceEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCce-ee----ecccccCcccceEEEEEcCCCCE-EEEe
Q 024407 79 ESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKL-LK----ESDKETGHKKTITSLAKAADGSH-FLTG 151 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~-~~----~~~~~~~h~~~v~~v~~s~~~~~-l~s~ 151 (268)
.++..+.+|.++|.++.|+|+ +.+|++|+.|++|++||+.++.. .. .+....+|...|.+++|+|++.. ++++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 456778999999999999997 78999999999999999986421 11 11123479999999999998876 4689
Q ss_pred eCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 152 SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
+.|++|++||+++++.+..+.+...+.+++|+|++..+++++ .+ ..+..||.+.+.... .+.+|.+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s-~D-~~IrIwD~Rsg~~i~------------tl~gH~g 210 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC-VG-KHMHIIDPRKQEIAS------------SFHIHDG 210 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe-cC-CEEEEEECCCCcEEE------------EEecccC
Confidence 999999999999988776666667799999999877654443 33 457788887665432 2345655
Q ss_pred ce-----EEEEECCCCCeEEeeeCCC----eEEEEeeCC
Q 024407 232 PI-----NALAFNPDGKSFSSGGEDG----YVRLHHFDP 261 (268)
Q Consensus 232 ~v-----~~~~~sp~~~~lasgs~Dg----~i~i~~~~~ 261 (268)
.+ ....|++++++|+|++.|+ .|+||+++.
T Consensus 211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 43 3345679999999988774 799999884
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.3e-20 Score=138.38 Aligned_cols=239 Identities=21% Similarity=0.284 Sum_probs=168.5
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCc------EEEEEecCCCceeeeeecC----CeEEEEEcCCCcccccceEeeeee
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGA------QLFTFNFDSPARSVDFAVG----DKLAVITTDPFMELNSAIHVKRIA 70 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 70 (268)
.|||+|.+|+|||.|++||+--.+..+ .+..--+++.++.++|..+ +.+++.+.++ ++.+.+
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag----dc~iy~---- 167 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG----DCKIYI---- 167 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC----cceEEE----
Confidence 489999999999999999998664322 2222236788899888653 2333333332 122221
Q ss_pred eCCCCCCCceEEEEecCCCCeEEE-EEcCCCCEEEEEeCCCcEEEEECCCCceeeecccc---cC-cccceEEEEEcCCC
Q 024407 71 RDPADQGGESVLILKGPQGRINRA-VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE---TG-HKKTITSLAKAADG 145 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~-h~~~v~~v~~s~~~ 145 (268)
.....+...+.+.||++-|..+ .| ++-.+++|++|.+||+||++-+..+..+... .+ ..+.|.++++.|.|
T Consensus 168 --tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 168 --TDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred --eecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence 1234567788999999998875 35 4678999999999999999987766655421 11 23679999999999
Q ss_pred CEEEEeeCCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhc
Q 024407 146 SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG 224 (268)
Q Consensus 146 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 224 (268)
..|+++-.|....+||+|.++.++.+. +...+.++.|+|.-.+ ++.++.+.. |...|.+... .....+-
T Consensus 244 rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~y-llt~syd~~-ikltdlqgdl--------a~el~~~ 313 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHY-LLTCSYDMK-IKLTDLQGDL--------AHELPIM 313 (350)
T ss_pred ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceE-EEEecccce-EEEeecccch--------hhcCceE
Confidence 999999999999999999999999875 4557899999996544 444444433 3333322110 0000111
Q ss_pred cccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 225 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 225 ~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
..-.|.+.+..+.|+|..-.|++.+.|.++.+|.+.+
T Consensus 314 vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALNG 350 (350)
T ss_pred EEEeccCceEEEEecCccceeeeccCcceEEEeccCC
Confidence 2235778888999999999999999999999998764
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=9e-22 Score=151.83 Aligned_cols=212 Identities=20% Similarity=0.263 Sum_probs=151.3
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC-c
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG-E 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (268)
.|||||.+++|||.|.+||+.|++..-... ...+. .++. .+.. .
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks--~~~em------~~~~---------------------------~qa~hP 163 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKS--KPKEM------ISGD---------------------------TQARHP 163 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhc--chhhh------ccCC---------------------------cccCCc
Confidence 499999999999999999999986421100 00000 0000 0111 2
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
-+..+-+|..+|+++.|+|-...|++|+.|++|+++|......-+-++.. .-..+|.++.|+|.|++|+.+..-.++++
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeE
Confidence 35567899999999999999999999999999999998653222111111 12468999999999999999999999999
Q ss_pred EECCCcceeeeee----cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccc-cccc-cce
Q 024407 160 WDARTLELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHF-GPI 233 (268)
Q Consensus 160 wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h~-~~v 233 (268)
||+.+.+|.-.-. +...++.+.+++.+...+.+ +.++ .|..|| .....+++++ +.|- +.|
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTa-SkDG-~IklwD------------GVS~rCv~t~~~AH~gsev 308 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTA-SKDG-AIKLWD------------GVSNRCVRTIGNAHGGSEV 308 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEe-ccCC-cEEeec------------cccHHHHHHHHhhcCCcee
Confidence 9999988765432 33468888999987655544 3332 344444 4444444433 2443 469
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+..|+.+++|+.|.+.|..+++|.+...
T Consensus 309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred eeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 99999999999999999999999998654
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=3e-21 Score=163.94 Aligned_cols=231 Identities=21% Similarity=0.317 Sum_probs=174.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
||.|+..++||+. +.+++|+..+.++++++... -+.+..|.|++..++++... +.+.+.+++. ...+
T Consensus 381 vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~-----Gel~vfdlaS------~~l~ 447 (888)
T KOG0306|consen 381 VSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKN-----GELQVFDLAS------ASLV 447 (888)
T ss_pred eecCceeeeecCC-CcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccC-----CceEEEEeeh------hhhh
Confidence 6778877777766 58999999999999988754 56777888988877766432 2333333322 2334
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceeeecc----cccCcccceEEEEEcCCCCEEEEee
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-----KLLKESD----KETGHKKTITSLAKAADGSHFLTGS 152 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~----~~~~h~~~v~~v~~s~~~~~l~s~~ 152 (268)
-.+++|.+.|.++..+||++.+++||.|++|++||..-- ...+.+. ..-.-+..|.++.+|||+.+|+.+-
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 456799999999999999999999999999999997521 1101011 0012356899999999999999999
Q ss_pred CCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 153 LDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 153 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
.|.++++|-+.+.+..-+++ |.-|+.++..+|+...++.++.+.+ + +.|....+.+...+.+|.+
T Consensus 528 LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn--V------------KiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN--V------------KIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc--e------------EEeccccchhhhhhhcccC
Confidence 99999999999887655554 6679999999998776666554432 2 2333344666777889999
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
.|+++.|-|+...+.|+|.|+.|+-|+-
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeech
Confidence 9999999999999999999999998743
No 79
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=1.6e-20 Score=161.43 Aligned_cols=194 Identities=14% Similarity=0.240 Sum_probs=138.8
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCCCc-------EEEEEe-cCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeee
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVETGA-------QLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIAR 71 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~~~-------~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 71 (268)
|+| ++++|+|||.|++|++||+.++. .+..+. |..++..+.|+|.. .+++.++ .+..+.+|++.
T Consensus 83 fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs-----~DgtVrIWDl~- 156 (493)
T PTZ00421 83 FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG-----ADMVVNVWDVE- 156 (493)
T ss_pred EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe-----CCCEEEEEECC-
Confidence 888 88999999999999999997652 234443 66789999999864 3444332 23456666653
Q ss_pred CCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccc-eEEEEEcCCCCEEEE
Q 024407 72 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHFLT 150 (268)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~v~~s~~~~~l~s 150 (268)
+++.+..+.+|...|+++.|+|+|.+|++++.|+.|++||+++++.+..+. +|... +..+.|.+++..+++
T Consensus 157 -----tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 157 -----RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred -----CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCCCeEEE
Confidence 345677888999999999999999999999999999999999988766543 56554 345678888888877
Q ss_pred ee----CCCcEEEEECCCcc-eeeeeec--CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCee
Q 024407 151 GS----LDKSAKLWDARTLE-LIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 210 (268)
Q Consensus 151 ~~----~d~~i~iwd~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 210 (268)
++ .|++|++||+++.. .+..... ...+....+++++..+++++ .+...+..||...+..
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg-kgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS-KGEGNIRCFELMNERL 294 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE-eCCCeEEEEEeeCCce
Confidence 64 47899999999754 3322221 12334455777766655554 3334577777766543
No 80
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.4e-22 Score=158.76 Aligned_cols=244 Identities=20% Similarity=0.243 Sum_probs=175.2
Q ss_pred EEEEee-cCCcEEEeecCCCcEEE-EEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEe
Q 024407 8 TLITGS-ADQTAKLWNVETGAQLF-TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 85 (268)
Q Consensus 8 ~l~s~s-~D~tv~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (268)
+++++. .--.+-+|.+.+..+.. .+..++++.++.-.|.+.+++++.- -..+..|.+ .+|+.+..+.
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i-----~g~lYlWel------ssG~LL~v~~ 120 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTI-----SGNLYLWEL------SSGILLNVLS 120 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecc-----cCcEEEEEe------ccccHHHHHH
Confidence 344443 33467888887766555 4456788888888888877776531 224455554 5667777788
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CceeeecccccCcccceEEEEEcCC--CCEEEEeeCCCcE
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET------GKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSA 157 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i 157 (268)
+|=..|+++.|+.||.+|+|||.||.|++|++-+ .....-+.....|.-+|+++.+.+. ..+++|++.|.++
T Consensus 121 aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 121 AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 9999999999999999999999999999997642 1111112223479999999987764 4589999999999
Q ss_pred EEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCe---eeeEeeehhhhhhhcccccccc--c
Q 024407 158 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK---FEAKFFDKILQEEIGGVKGHFG--P 232 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~h~~--~ 232 (268)
++||+-.+..+.++..+..+.+++..|-+..+.+++..+...+.......+. +..+.+. .....+..+.||.+ .
T Consensus 201 k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~-~~~t~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 201 KLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH-EENTQINVLVGHENESA 279 (476)
T ss_pred EEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccc-cccceeeeeccccCCcc
Confidence 9999999999999988999999999998766666554443333322211110 0001110 11334556788988 9
Q ss_pred eEEEEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 233 INALAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
|+|++++-||..|+||+.||.+.||+....+
T Consensus 280 ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 280 ITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred eeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 9999999999999999999999999887653
No 81
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.9e-21 Score=165.79 Aligned_cols=232 Identities=16% Similarity=0.225 Sum_probs=160.4
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCC-cEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETG-AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
+|.|+|..|+||+.|+.||+|+.... +.-..+. ....+.+++... .+++..+- ...+....+ ..+
T Consensus 20 ~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-~~f~~~s~------~~tv~~y~f------ps~ 86 (933)
T KOG1274|consen 20 CYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-NHFLTGSE------QNTVLRYKF------PSG 86 (933)
T ss_pred EEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-cceEEeec------cceEEEeeC------CCC
Confidence 37899999999999999999986543 2222232 334444444322 23322221 112222222 122
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
+.-..|.--+-++++++|+-+|++++.||.|-.|++-++.+......+. +|.++|.++.++|.++.|++++.||.|+
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr---gh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR---GHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec---ccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 2222233346688999999999999999999999999998876555544 7999999999999999999999999999
Q ss_pred EEECCCcceeeeee---------cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccc
Q 024407 159 LWDARTLELIKTYV---------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 229 (268)
Q Consensus 159 iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h 229 (268)
+||+.++.+..++. ....+..++|+|.+..+++.+.+.. +..++........++- .+-+
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~--Vkvy~r~~we~~f~Lr----------~~~~ 231 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT--VKVYSRKGWELQFKLR----------DKLS 231 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe--EEEEccCCceeheeec----------cccc
Confidence 99999887766542 1345778899999777776655443 3333332222111111 1224
Q ss_pred ccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 230 FGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 230 ~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
...+.++.|+|.|+|||+++.||.|-||+++
T Consensus 232 ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 232 SSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 4559999999999999999999999999998
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=2.5e-21 Score=155.19 Aligned_cols=167 Identities=22% Similarity=0.365 Sum_probs=139.1
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
..+..++||+..|+++.++|+...+++++.|..|++|........... ..|..+|+.+..+|.|.||++++.|++.-
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~---~~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS---RPHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc---ccccccceeeeeccCCcEEEEecCCceEE
Confidence 345668999999999999999999999999999999998765433322 36999999999999999999999999999
Q ss_pred EEECCCcceeeeeecC---CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 159 LWDARTLELIKTYVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
+.|.+++.++.....+ ....+.+++|++ ++++.|...+.+..||..... +...+.+|+++|.+
T Consensus 329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt~d~~vkiwdlks~~------------~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDG--LIFGTGTPDGVVKIWDLKSQT------------NVAKFPGHTGPVKA 394 (506)
T ss_pred EEEccCCcEEEEEeeccccceeEEeeEcCCc--eEEeccCCCceEEEEEcCCcc------------ccccCCCCCCceeE
Confidence 9999999887766543 457889999964 555666666777777765443 34446789999999
Q ss_pred EEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 236 LAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 236 ~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
++|+.+|.|+|++..|+.|++|+++..
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhh
Confidence 999999999999999999999999854
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6e-21 Score=154.88 Aligned_cols=228 Identities=19% Similarity=0.328 Sum_probs=164.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|=.||++|+.|...|.|+++|+++..-+..+ .|..|++...|+|.+...+++.+. +....+|.+.. ..-
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD----d~v~k~~d~s~------a~v 145 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD----DKVVKYWDLST------AYV 145 (487)
T ss_pred eecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC----CceEEEEEcCC------cEE
Confidence 5579999999999999999996553333333 368899999999976554444321 33455555432 222
Q ss_pred EEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-ceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 81 VLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
...+.+|++-|.+.+|+|... .++|||+||.||+||.++. ..+..+ .|..+|..+.+-|.|..+++|+. ..++
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el----nhg~pVe~vl~lpsgs~iasAgG-n~vk 220 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL----NHGCPVESVLALPSGSLIASAGG-NSVK 220 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe----cCCCceeeEEEcCCCCEEEEcCC-CeEE
Confidence 457899999999999999776 6789999999999999986 444444 38899999999999999999886 6799
Q ss_pred EEECCCc-ceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 159 LWDARTL-ELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 159 iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
+||+-++ +.+.... +...+.++.+..++.. +++++-|. .+..+|....... ..| ..+++|.++
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r-LlS~sLD~-~VKVfd~t~~Kvv-~s~------------~~~~pvLsi 285 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR-LLSGSLDR-HVKVFDTTNYKVV-HSW------------KYPGPVLSI 285 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCce-Eeeccccc-ceEEEEccceEEE-Eee------------ecccceeeE
Confidence 9999854 4443333 6678999999886544 44445443 3444442221111 111 245789999
Q ss_pred EECCCCCeEEeeeCCCeEEEEee
Q 024407 237 AFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
+.+|+++.++.|-.||.+-+-+.
T Consensus 286 avs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 286 AVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EecCCCceEEEecccceeeeehh
Confidence 99999999999999999866443
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.9e-22 Score=168.61 Aligned_cols=198 Identities=23% Similarity=0.391 Sum_probs=148.0
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
|.+++|+|||.||+|++|+...-.... ....+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~----------------------------------------------s~~~~as 68 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEP----------------------------------------------STPYIAS 68 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCc----------------------------------------------ccchhhh
Confidence 567889999999999999864321100 0011333
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEE-cCCCCEEEEeeCCCcEEEEEC
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK-AADGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~-s~~~~~l~s~~~d~~i~iwd~ 162 (268)
+..|+.+|+++...-+++.|+++|.|-+|++|+...+... .......|..+|.++++ .++...+++|+.|+.|++||+
T Consensus 69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~-c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi 147 (735)
T KOG0308|consen 69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF-CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDI 147 (735)
T ss_pred hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch-hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEc
Confidence 5678999999999999999999999999999999876422 12222359999999999 788889999999999999999
Q ss_pred CCcce--eeee--------e--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccc
Q 024407 163 RTLEL--IKTY--------V--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 230 (268)
Q Consensus 163 ~~~~~--~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~ 230 (268)
.++.. +.++ . ...++.+++.++.+ .++++++.. ..+..||.+...- +-.++||+
T Consensus 148 n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgte-k~lr~wDprt~~k------------imkLrGHT 213 (735)
T KOG0308|consen 148 NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTE-KDLRLWDPRTCKK------------IMKLRGHT 213 (735)
T ss_pred cCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcc-cceEEeccccccc------------eeeeeccc
Confidence 97622 2221 1 12357788888875 444444443 4566677665433 33467999
Q ss_pred cceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 231 GPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 231 ~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..|.++..++||+.++|+|.||+||+|.+..-
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 99999999999999999999999999998753
No 85
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.5e-21 Score=151.16 Aligned_cols=198 Identities=25% Similarity=0.413 Sum_probs=153.1
Q ss_pred CCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEc-CCCcccccceEeeeeeeCC----------
Q 024407 6 SMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDP---------- 73 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------- 73 (268)
.+++.|+|.|.|.++|.+++++++..+. |.+.+.+++|++...+++.++ +....+|...--|..+...
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 4579999999999999999999988875 788999999999877766654 3333333311111111100
Q ss_pred --------------CCC----CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccc
Q 024407 74 --------------ADQ----GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT 135 (268)
Q Consensus 74 --------------~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 135 (268)
+.. -..|+..+.||.+.|.+..|-..|++++++++|.+..+||++++..+..+ .||...
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~L---tGHd~E 316 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNIL---TGHDSE 316 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccc---cCcchh
Confidence 000 12567779999999999999999999999999999999999999876644 589999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEee
Q 024407 136 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 215 (268)
Q Consensus 136 v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 215 (268)
.+.+.-+|....+++++.|.+.++||+| +.++..
T Consensus 317 LtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV-------------------------------------------- 350 (481)
T KOG0300|consen 317 LTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSV-------------------------------------------- 350 (481)
T ss_pred ccccccCCcceEEEEeccCceeEeccch--hhccee--------------------------------------------
Confidence 9999999999999999999999999998 222110
Q ss_pred ehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 216 DKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
..++||.+.|+++.|.-|.+ ++|||.|.+|+||++++
T Consensus 351 --------~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 351 --------AVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRN 387 (481)
T ss_pred --------eeecccccceeEEEEecCCc-eeecCCCceEEEeeecc
Confidence 01257888899999987644 78899999999998874
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=5.2e-22 Score=158.08 Aligned_cols=233 Identities=21% Similarity=0.323 Sum_probs=169.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc--EEEEEe-cCCCceeeeeecCCeEEEEEc-CCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA--QLFTFN-FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
|-+++.+|+||+.|..|++|+....+ .+.++. ..+++..+++-+..+.+++++ ++.. .+|.+ ..
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~------r~Wnv------d~ 250 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL------RLWNV------DS 250 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce------eeeec------cc
Confidence 45677899999999999999986555 333332 356688888877666655554 3333 33332 22
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
......|.||++.|+++.|......+++|+.|.+|+.||+....+.+.+-. .+.+.++.++ ...++++=.|++|
T Consensus 251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~----~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP----GSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc----cccccceEec--ceeeeecccccce
Confidence 344567899999999999988777799999999999999998766655432 2455566554 4567788889999
Q ss_pred EEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 158 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
++||.|+..+...+.....+.++..++.+..++.++-++ .+...|.+...+...+ . .+.. -.+| ..+.+.
T Consensus 325 RfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd--tl~viDlRt~eI~~~~-s---A~g~--k~as--Dwtrvv 394 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD--TLKVIDLRTKEIRQTF-S---AEGF--KCAS--DWTRVV 394 (459)
T ss_pred EEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC--ceeeeecccccEEEEe-e---cccc--cccc--ccceeE
Confidence 999999999888888888899999999887777764443 3455566655443221 1 1111 1222 388999
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|||++.|+|+||.||.|+||.+..+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCc
Confidence 9999999999999999999998876
No 87
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.88 E-value=5.4e-20 Score=144.61 Aligned_cols=246 Identities=16% Similarity=0.261 Sum_probs=171.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
.+|+.+.++|||.|....+|++.++.....+- |...|.++.|+..+.+++.+ .+.+.+.++... ++..
T Consensus 72 l~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG-----dmsG~v~v~~~s------tg~~ 140 (399)
T KOG0296|consen 72 LHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG-----DMSGKVLVFKVS------TGGE 140 (399)
T ss_pred eCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec-----CCCccEEEEEcc------cCce
Confidence 47899999999999999999999999766654 78889999999877665543 245566665543 2333
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
...+...-..+.-+.|+|-+..|+.|+.||.+-||.+.++...+.+ .||..++++=.|.|+|+.++++..||+|++|
T Consensus 141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~---~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~W 217 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM---SGHNSPCTCGEFIPDGKRILTGYDDGTIIVW 217 (399)
T ss_pred EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe---cCCCCCcccccccCCCceEEEEecCceEEEE
Confidence 4445455677888999999999999999999999999886433333 4899999999999999999999999999999
Q ss_pred ECCCcceeeeeec--CCceeEEEEccCCCeEE---------EeecCCCceEEEeccCCCee-------------------
Q 024407 161 DARTLELIKTYVT--ERPVNAVTMSPLLDHVV---------LGGGQDASAVTTTDHRAGKF------------------- 210 (268)
Q Consensus 161 d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~~d~~~~~~------------------- 210 (268)
|+++++++.++.. ..+..++.++..+..++ .+....+.++...+......
T Consensus 218 n~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~ 297 (399)
T KOG0296|consen 218 NPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK 297 (399)
T ss_pred ecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc
Confidence 9999987776541 11222222222211111 11111112222222100000
Q ss_pred -----------eeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 211 -----------EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 211 -----------~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
..-+|+. ....++....|..+|+.+.|-+ ..+|++++.||.||.|+.+..+
T Consensus 298 lpL~A~G~vdG~i~iyD~-a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 298 LPLAACGSVDGTIAIYDL-AASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred cchhhcccccceEEEEec-ccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence 0012222 1233456677889999999998 7899999999999999998764
No 88
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.1e-20 Score=163.31 Aligned_cols=236 Identities=21% Similarity=0.302 Sum_probs=175.2
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.|+|.+++|+|||.|.+||+|+.+..+++.++. |-.=|+.+.||+.-...+.+++ +..+++|.. ++.+
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD-----DQTIrIWNw------qsr~ 126 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD-----DQTIRIWNW------QSRK 126 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC-----CCeEEEEec------cCCc
Confidence 499999999999999999999999998888765 5566899999987776666665 345555554 5678
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------C--------cee-eec---------ccccCcc
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET--------G--------KLL-KES---------DKETGHK 133 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--------~--------~~~-~~~---------~~~~~h~ 133 (268)
++..+.||+.-|.|..|+|....++|+|-|.+||+||..- + ... ..+ ...+||.
T Consensus 127 ~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 127 CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence 9999999999999999999999999999999999999742 0 000 000 0136899
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce--eee-eecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCee
Q 024407 134 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKT-YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 210 (268)
Q Consensus 134 ~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 210 (268)
..|+.++|+|.-..++||+.|..|++|.+...+. +.+ ..+...+.++-|+|..+.++..+.+ ..+..||.....-
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsED--ksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSED--KSIRVWDMTKRTS 284 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCC--ccEEEEecccccc
Confidence 9999999999999999999999999999875331 111 2345678899999987666655433 3455665432221
Q ss_pred eeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 211 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+.....-.+.-+.++-+|..+.+|.|- |+-+.||.++-|
T Consensus 285 ------------v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRE 323 (1202)
T KOG0292|consen 285 ------------VQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERE 323 (1202)
T ss_pred ------------eeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEccc
Confidence 111222235678899999999988655 666667777744
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=5.2e-20 Score=158.70 Aligned_cols=222 Identities=22% Similarity=0.376 Sum_probs=173.2
Q ss_pred CCEEEEeecCCcEEEeecCCCcEEEE-Ee-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 6 SMTLITGSADQTAKLWNVETGAQLFT-FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
...+++++.|.++++||..++..+.. +. |.+.+..+++..++..++.++ .+..+.+|+. .++++++.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS-----~D~t~rvWd~------~sg~C~~~ 286 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGS-----TDKTERVWDC------STGECTHS 286 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEe-----cCCcEEeEec------CCCcEEEE
Confidence 45799999999999999999988776 54 678888998877555555443 2345555553 57899999
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
+.||+..|.++...+ .++++|+.|.+|++|++.+++.+..+. +|..+|.++.+. +.++++++.|++|++||.+
T Consensus 287 l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~---~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 287 LQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLR---GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred ecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEec---cccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 999999999988765 577889999999999999988776553 599999999876 7899999999999999999
Q ss_pred Ccceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 164 TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
+++++.++. +...+.++.+.+. ..++.++.+ ..+..||.+.+. .++..+++|.+.|..+.+ .+
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D-~~IkvWdl~~~~-----------~c~~tl~~h~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLD-TTIKVWDLRTKR-----------KCIHTLQGHTSLVSSLLL--RD 423 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc--ceEEeeeec-cceEeecCCchh-----------hhhhhhcCCccccccccc--cc
Confidence 999998875 4556777766653 344444444 456667655431 456678889988876664 56
Q ss_pred CeEEeeeCCCeEEEEeeCC
Q 024407 243 KSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 243 ~~lasgs~Dg~i~i~~~~~ 261 (268)
+.|++++.|++|++|....
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred ceeEeccccccEEEeeccc
Confidence 7999999999999997663
No 90
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=6.7e-21 Score=160.50 Aligned_cols=219 Identities=23% Similarity=0.335 Sum_probs=151.6
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEE--EEe-cCCCcee-eeeec--CCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLF--TFN-FDSPARS-VDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~--~~~-~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
++-.++++|.|+|+|+|+-....-+. .+. +.+-+.. +++.+ ...++..+.|.... + ....+.
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~------v------~~~~~~ 91 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII------V------FKLSQA 91 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE------E------EecCCC
Confidence 34469999999999999965443322 122 2222222 33322 12233333332221 2 223566
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
+|...|+||+..|+++....++. ++|||+|.++++|.... .... ..+|++.|++++.-|++ .++||+.|.+|+
T Consensus 92 ~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~---l~gH~asVWAv~~l~e~-~~vTgsaDKtIk 164 (745)
T KOG0301|consen 92 EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYS---LQGHTASVWAVASLPEN-TYVTGSADKTIK 164 (745)
T ss_pred CchhhhhccccceeeeecCCcCc-eEecccccceEEecchh--hhcc---cCCcchheeeeeecCCC-cEEeccCcceee
Confidence 78889999999999999877777 89999999999997643 2222 35899999999988888 899999999999
Q ss_pred EEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 159 LWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 159 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
+|.- +++++++. |..-+..++.-+. ..++.++ .++ .|..|+. .++.+..+.+|++.|.+++
T Consensus 165 lWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScs-NDg-~Ir~w~~-------------~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 165 LWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCS-NDG-SIRLWDL-------------DGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred eccC--CchhhhhccchhheeeeEEecC-CCeEeec-CCc-eEEEEec-------------cCceeeeeeccceEEEEEE
Confidence 9975 45666653 5556777887774 3455554 332 3455544 2334455678999999999
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeC
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
..+++..++|+++|+++|||.-+
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC
Confidence 88888999999999999999765
No 91
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.1e-20 Score=138.28 Aligned_cols=226 Identities=19% Similarity=0.248 Sum_probs=165.1
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
+.|+..|++|+.|+.+.+||+++|+.++.++ |...+..++|.....+++.++ .++.++.|+-.. ...+|+
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs-----fD~s~r~wDCRS----~s~ePi 138 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS-----FDSSVRLWDCRS----RSFEPI 138 (307)
T ss_pred cccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc-----ccceeEEEEccc----CCCCcc
Confidence 4577889999999999999999999999998 678899999877666554432 455666665443 345788
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
+.+......|.++..+. -.|++|+-||++|.||++.|+..... -..+|+++.|++|++..++++.|++|++.|
T Consensus 139 Qildea~D~V~Si~v~~--heIvaGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred chhhhhcCceeEEEecc--cEEEeeccCCcEEEEEeecceeehhh-----cCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 88888888899888764 57889999999999999998765433 346899999999999999999999999999
Q ss_pred CCCcceeeeeecCC---ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc-eEEEE
Q 024407 162 ARTLELIKTYVTER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALA 237 (268)
Q Consensus 162 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~ 237 (268)
-.+++.++.+.... -....++.+...+ +++++.+ +.+..||........ .+..|... |.+++
T Consensus 212 k~tGklL~sYkGhkn~eykldc~l~qsdth-V~sgSED-G~Vy~wdLvd~~~~s------------k~~~~~~v~v~dl~ 277 (307)
T KOG0316|consen 212 KETGKLLKSYKGHKNMEYKLDCCLNQSDTH-VFSGSED-GKVYFWDLVDETQIS------------KLSVVSTVIVTDLS 277 (307)
T ss_pred cchhHHHHHhcccccceeeeeeeeccccee-EEeccCC-ceEEEEEeccceeee------------eeccCCceeEEeee
Confidence 99999887764211 2234445554443 4444444 456666655443322 23344444 89999
Q ss_pred ECCCCCeEEeeeCCCeEEEEee
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
++|...-|+++. ++.+..|+-
T Consensus 278 ~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 278 CHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred cccCccceeEec-CCceeceee
Confidence 999876666655 456666643
No 92
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.9e-20 Score=143.61 Aligned_cols=230 Identities=16% Similarity=0.257 Sum_probs=158.1
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCC--eEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
|-.+|.|+|-|.++|+||.++......|.+.+.+...+++|-. +-++++... +..++.=+ ...|...+
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr----~~~VrLCD------i~SGs~sH 182 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTR----DVQVRLCD------IASGSFSH 182 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecC----CCcEEEEe------ccCCccee
Confidence 5668999999999999999999999999999999999988832 333332211 11112112 34567788
Q ss_pred EEecCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCC-ceee-----------ecccccCcccceEEEEEcCCCCEEE
Q 024407 83 ILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETG-KLLK-----------ESDKETGHKKTITSLAKAADGSHFL 149 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~-~~~~-----------~~~~~~~h~~~v~~v~~s~~~~~l~ 149 (268)
.|.||.+.|.++.|+|..++ |++|+.||.||+||++.. .+.. .++...+|.+.|..++|+.++.+++
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence 99999999999999999875 579999999999999863 1111 1122357888999999999999999
Q ss_pred EeeCCCcEEEEECCCcceee-eee---cCCceeEEEE---ccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhh
Q 024407 150 TGSLDKSAKLWDARTLELIK-TYV---TERPVNAVTM---SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 222 (268)
Q Consensus 150 s~~~d~~i~iwd~~~~~~~~-~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 222 (268)
+++.|..+++|+..+++.-. .+. ++. .....+ +-+.+.++.-..+ .+.. ++....++.
T Consensus 263 ~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~-~~~~~~~~~~~~s~vfv~~p~~-----------~~la---ll~~~sgs~ 327 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRNTLREFGPIIHNQ-TTSFAVHIQSMDSDVFVLFPND-----------GSLA---LLNLLEGSF 327 (397)
T ss_pred hccCccceEEeecccCcccccccccccccc-cccceEEEeecccceEEEEecC-----------CeEE---EEEccCceE
Confidence 99999999999998775311 110 000 000010 1111111111111 1111 222233445
Q ss_pred hccccccccceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 223 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 223 ~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
++.+..|-..|.|.+|.|+-+.+.+|+.|+.|..|-.
T Consensus 328 ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 328 VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 5667788888999999999999999999999998854
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.2e-20 Score=157.90 Aligned_cols=237 Identities=26% Similarity=0.404 Sum_probs=169.9
Q ss_pred CCCCEEEEeecCCcEEEeecCCCc--EEEEEe-cCCCceeeee-ecCCeEEEEEcCCCcccccceEeeeeeeCC----CC
Q 024407 4 ANSMTLITGSADQTAKLWNVETGA--QLFTFN-FDSPARSVDF-AVGDKLAVITTDPFMELNSAIHVKRIARDP----AD 75 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~--~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 75 (268)
.+++.|+|||.|-|||+|+...+- ....++ |..=|.++++ .+...+++.+ -++..+-+|++.... ..
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSg-----GLD~~IflWDin~~~~~l~~s 157 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASG-----GLDRKIFLWDINTGTATLVAS 157 (735)
T ss_pred cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEec-----CCCccEEEEEccCcchhhhhh
Confidence 467899999999999999998763 333444 4555788887 4444443322 256667777765332 12
Q ss_pred CCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 76 QGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 76 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
....+...+. |+..+|++++.++.|-.|++||..+.+++||.++++.+..+. ||+.-|..+..+.||..+++++.|
T Consensus 158 ~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 158 FNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred ccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEEEEcCCCCeEeecCCC
Confidence 2334444455 899999999999999999999999999999999998777664 899999999999999999999999
Q ss_pred CcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 155 KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
|+|++||++..+|+.++. +...+.++..+|....+.+++ .++ .+...|.+....... ++....+|
T Consensus 235 gtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~-~i~~Tdl~n~~~~tl------------ick~daPv 300 (735)
T KOG0308|consen 235 GTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-RDG-NIYRTDLRNPAKSTL------------ICKEDAPV 300 (735)
T ss_pred ceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-CCC-cEEecccCCchhheE------------eecCCCch
Confidence 999999999999999875 445678888888766655543 332 344444443211111 12233467
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+..+.+.+.+=++..|+.|+-|..++.
T Consensus 301 ~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 301 LKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred hhhhhccccCCceeeeccccceecCCccc
Confidence 77777765555455678899998877654
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.3e-20 Score=144.58 Aligned_cols=173 Identities=21% Similarity=0.317 Sum_probs=127.4
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------------------------------ceeee
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG------------------------------------KLLKE 125 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------------------------------~~~~~ 125 (268)
..|+||.+.|++++|+.||++|++++.|++||+||++.- ..++.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 458999999999999999999999999999999998630 00000
Q ss_pred ccc--------------------ccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCC-ceeEEEEcc
Q 024407 126 SDK--------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSP 184 (268)
Q Consensus 126 ~~~--------------------~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~ 184 (268)
+.. ..-|+..+..+.....+.++++++.|..|.+|+++ ++.++++.... .....+.+|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 000 01355667777777788899999999999999999 77777765432 344567899
Q ss_pred CCCeEEEeecCCCceEEEec---cCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 185 LLDHVVLGGGQDASAVTTTD---HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~~d---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
++..+++++.+... ..|. .+.|.+ .....+-.++||.+.|.+++|||+.+.++|.|.||++|||+.+-
T Consensus 239 ~GRFia~~gFTpDV--kVwE~~f~kdG~f-------qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDV--KVWEPIFTKDGTF-------QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred CCcEEEEecCCCCc--eEEEEEeccCcch-------hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 98887777655432 2222 111111 01112236789999999999999999999999999999999887
Q ss_pred Ccc
Q 024407 262 DYF 264 (268)
Q Consensus 262 ~~~ 264 (268)
+|+
T Consensus 310 rY~ 312 (420)
T KOG2096|consen 310 RYE 312 (420)
T ss_pred eEe
Confidence 764
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=2.2e-18 Score=140.61 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=159.0
Q ss_pred CCCCCCEE-EEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l-~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+||++.+ ++++.|++|++||+.+++....+.....+..+.+++.++.+.+++.. +..+.++++. +...
T Consensus 38 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~----~~~l~~~d~~------~~~~ 107 (300)
T TIGR03866 38 LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED----DNLVTVIDIE------TRKV 107 (300)
T ss_pred ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC----CCeEEEEECC------CCeE
Confidence 78999876 67788999999999998877766555556778888877655444321 2344444432 2234
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEe-eCCCcEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDA-IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAK 158 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-~~d~~i~ 158 (268)
+..++. ...+.++.|+|+++.+++++.++ .+.+||.++++...... .......++|++++..++++ ..++.|+
T Consensus 108 ~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 182 (300)
T TIGR03866 108 LAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL----VDQRPRFAEFTADGKELWVSSEIGGTVS 182 (300)
T ss_pred EeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE----cCCCccEEEECCCCCEEEEEcCCCCEEE
Confidence 444442 23467899999999999888765 56788998876654332 12345678999999988544 5699999
Q ss_pred EEECCCcceeeeeecC--------CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccc
Q 024407 159 LWDARTLELIKTYVTE--------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 230 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~ 230 (268)
+||+++++++..+... .....+.++|++..++++.+.+. .+..||.+.+...... .+.
T Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~-~i~v~d~~~~~~~~~~-------------~~~ 248 (300)
T TIGR03866 183 VIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN-RVAVVDAKTYEVLDYL-------------LVG 248 (300)
T ss_pred EEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC-eEEEEECCCCcEEEEE-------------EeC
Confidence 9999998776654321 12345778998887666544333 3666776655432211 122
Q ss_pred cceEEEEECCCCCeEEee-eCCCeEEEEeeCCCc
Q 024407 231 GPINALAFNPDGKSFSSG-GEDGYVRLHHFDPDY 263 (268)
Q Consensus 231 ~~v~~~~~sp~~~~lasg-s~Dg~i~i~~~~~~~ 263 (268)
..+.+++|+|+|++|+++ +.+|.|++|+.+...
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 368899999999998876 568999999998653
No 96
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=3.1e-20 Score=146.59 Aligned_cols=174 Identities=21% Similarity=0.381 Sum_probs=139.8
Q ss_pred CceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC-CCEEEEeeCCC
Q 024407 78 GESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDK 155 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~ 155 (268)
..++..+.+|.+.-+.++|||.- ..|++|..-+.|++|...++.-........+|...|-.+.+||. ...|++|+.|+
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence 45788899999999999999943 45888888899999999987655555566789999999999984 56889999999
Q ss_pred cEEEEECCCc---ceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 156 SAKLWDARTL---ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 156 ~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
+|+|||.|++ .++..-.++..++.++|+.... ++++|.+.+.+..||.|.-.. .+.+..++-|..+
T Consensus 281 sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~---------~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKS---------GQPVATFKYHKAP 349 (440)
T ss_pred eEEEEEecCCCccceeEeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccC---------CCcceeEEeccCC
Confidence 9999999988 5666656777899999998654 555566667788888764222 2335567789999
Q ss_pred eEEEEECCCC-CeEEeeeCCCeEEEEeeCCC
Q 024407 233 INALAFNPDG-KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 233 v~~~~~sp~~-~~lasgs~Dg~i~i~~~~~~ 262 (268)
|+++.|+|.. ..|+++|.|..|.||++.=|
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 9999999965 45888899999999998643
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.5e-20 Score=161.48 Aligned_cols=169 Identities=24% Similarity=0.382 Sum_probs=136.5
Q ss_pred EEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------------------------------cee-
Q 024407 81 VLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-----------------------------------KLL- 123 (268)
Q Consensus 81 ~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------------------------------~~~- 123 (268)
.+.+. +|.+.|.++.|++||+|||+||+|+.||||.+... +..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34566 89999999999999999999999999999976440 000
Q ss_pred --------e-------------ecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEE
Q 024407 124 --------K-------------ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 182 (268)
Q Consensus 124 --------~-------------~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 182 (268)
. .+....||.+.|.++.||.+ .+|++++.|.|||||++...+|+..+.|..-+.+++|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF 417 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF 417 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence 0 00011589999999999865 5899999999999999999999999999999999999
Q ss_pred ccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 183 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+|.++..+++|.-|+. +..|+.....+. .|... ..-|++++|+|||++.+.|+-+|.+++|...+.
T Consensus 418 nPvDDryFiSGSLD~K-vRiWsI~d~~Vv--~W~Dl-----------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGK-VRLWSISDKKVV--DWNDL-----------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred cccCCCcEeecccccc-eEEeecCcCeeE--eehhh-----------hhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 9999998988887764 566765544432 33321 246999999999999999999999999998876
Q ss_pred cc
Q 024407 263 YF 264 (268)
Q Consensus 263 ~~ 264 (268)
.+
T Consensus 484 k~ 485 (712)
T KOG0283|consen 484 KL 485 (712)
T ss_pred eE
Confidence 44
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=6.1e-21 Score=155.69 Aligned_cols=230 Identities=18% Similarity=0.277 Sum_probs=166.0
Q ss_pred CCCCCEEEEeecCCcEEEeecCCC---cEEEEEe---cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 3 QANSMTLITGSADQTAKLWNVETG---AQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
|...+.++||+. |-||+||+... ..+..+. -+.-++++.+.+++..++++.. .+.+.+|++......-
T Consensus 428 S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe-----astlsiWDLAapTpri 501 (705)
T KOG0639|consen 428 SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE-----ASTLSIWDLAAPTPRI 501 (705)
T ss_pred cCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc-----cceeeeeeccCCCcch
Confidence 445567888877 78999999643 2222222 1233778888888887777653 3456677765432100
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
.. .+......-+.++.+||.+..++++.||.|+|||+++...++++. +|+..+.|+.+++||..|.+++-|++
T Consensus 502 ka----eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq---GhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 502 KA----ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred hh----hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc---CCCCCceeEEecCCCceeecCCCccc
Confidence 00 011111223557899999999999999999999999988887775 89999999999999999999999999
Q ss_pred EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
||-||+|.++.++...-..++..+.++|.++.++++-.... +...-. .+.+...+.-|.+.|.++
T Consensus 575 vRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~--vevlh~-------------skp~kyqlhlheScVLSl 639 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN--VEVLHT-------------SKPEKYQLHLHESCVLSL 639 (705)
T ss_pred eeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc--EEEEec-------------CCccceeecccccEEEEE
Confidence 99999999887776655667899999999888776533222 221110 111222344578899999
Q ss_pred EECCCCCeEEeeeCCCeEEEEeeC
Q 024407 237 AFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.|++-|++++|.+.|..+..|+..
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred EecccCceeeecCchhhhhhccCc
Confidence 999999999999999999999875
No 99
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=6.6e-19 Score=132.98 Aligned_cols=228 Identities=16% Similarity=0.233 Sum_probs=162.8
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
+....|+|++.|++|++||+..+++...+.....-..+.|+|.+...++++... .+...+.... +.+ .
T Consensus 75 ~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD-----~it~id~r~~------~~~-~ 142 (313)
T KOG1407|consen 75 KHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDD-----RITFIDARTY------KIV-N 142 (313)
T ss_pred CCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc-----cEEEEEeccc------cee-e
Confidence 456789999999999999999999999998888888888999776666554321 1111111110 000 0
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
-....-.++-++|+.++..++....-|.|.|.....-+++..+ .+|++.-.++.|+|+|.++++|+.|..+.+||+.
T Consensus 143 ~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si---~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 143 EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI---KAHPSNCICIEFDPDGRYFATGSADALVSLWDVD 219 (313)
T ss_pred hhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccc---ccCCcceEEEEECCCCceEeeccccceeeccChh
Confidence 1112345677889887888877777899999988766665554 4799999999999999999999999999999998
Q ss_pred Ccceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 164 TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
..-|++.+. .+.++..++|+-++.+++.++ . ...|-..+..+|.-. | ++ .+.++.+.++|+|..
T Consensus 220 ELiC~R~isRldwpVRTlSFS~dg~~lASaS-E-Dh~IDIA~vetGd~~---~---------eI-~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 220 ELICERCISRLDWPVRTLSFSHDGRMLASAS-E-DHFIDIAEVETGDRV---W---------EI-PCEGPTFTVAWHPKR 284 (313)
T ss_pred HhhhheeeccccCceEEEEeccCcceeeccC-c-cceEEeEecccCCeE---E---------Ee-eccCCceeEEecCCC
Confidence 777776663 577899999998876655433 3 234444444444321 1 11 256788999999999
Q ss_pred CeEEeeeCC---------CeEEEEeeCC
Q 024407 243 KSFSSGGED---------GYVRLHHFDP 261 (268)
Q Consensus 243 ~~lasgs~D---------g~i~i~~~~~ 261 (268)
..||-++.| |.+++|-+.+
T Consensus 285 ~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 285 PLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred ceeeEEecCCCCccccccceeEEecCCC
Confidence 998876654 5788876654
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.5e-18 Score=126.88 Aligned_cols=238 Identities=21% Similarity=0.295 Sum_probs=167.7
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCC------------CcEEEEE----ecCCCceeeeeecCCeEEEEEcCCCcccccce
Q 024407 1 MFQANSMTLITGSADQTAKLWNVET------------GAQLFTF----NFDSPARSVDFAVGDKLAVITTDPFMELNSAI 64 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (268)
.|+|.|.+.+.||..+|.|+--... ..+...+ .+.+.|.+.+|+|.++++..++. +..+
T Consensus 39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn-----dk~i 113 (350)
T KOG0641|consen 39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN-----DKTI 113 (350)
T ss_pred EecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC-----CceE
Confidence 3899999999999999999864311 1112222 25688999999997766555442 1223
Q ss_pred EeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCC----CCEEEEEe-CCCcEEEEECCCCceeeecccccCcccceEEE
Q 024407 65 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPL----NRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSL 139 (268)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v 139 (268)
++-....+.. +...+-..+.-|.+.|.+++|-.+ +..|++++ .|..|++-|-.+++...-+ .+|...|.++
T Consensus 114 k~l~fn~dt~-~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~---sghtghilal 189 (350)
T KOG0641|consen 114 KVLPFNADTC-NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL---SGHTGHILAL 189 (350)
T ss_pred EEEecccccc-cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee---cCCcccEEEE
Confidence 3322222111 112233457789999999999643 34566654 6777888888888765544 4788888876
Q ss_pred EEcCCCCEEEEeeCCCcEEEEECCCcceeeeeec--------CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee
Q 024407 140 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 211 (268)
Q Consensus 140 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 211 (268)
++-++-++++++.|.+|++||+|-..++.++.. ...+.+++..|.+..+ ++ |.....+..+|.+.++..
T Consensus 190 -yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll-~s-g~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 190 -YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL-AS-GHADSSCMLYDIRGGRMI 266 (350)
T ss_pred -EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee-ee-ccCCCceEEEEeeCCcee
Confidence 456788999999999999999999888887642 2356778889976533 33 333344556777766654
Q ss_pred eEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 212 AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.++ ..|+..|.|+.|||.-.|+.+|+-|-.|++=+++++
T Consensus 267 q~f------------~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 267 QRF------------HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred eee------------CCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 433 458889999999999999999999999999999876
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=2.3e-19 Score=158.09 Aligned_cols=240 Identities=21% Similarity=0.338 Sum_probs=165.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCC------------------CcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCccccc
Q 024407 2 FQANSMTLITGSADQTAKLWNVET------------------GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNS 62 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (268)
|||||++||+||.|+.|.+|.... .+.+..++ |+..|..+.|+|.+.+++..+ +++
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s-----~Dn 151 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS-----LDN 151 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec-----ccc
Confidence 899999999999999999999762 01233333 788899999999776655433 344
Q ss_pred ceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecc---cccCcccceEEE
Q 024407 63 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD---KETGHKKTITSL 139 (268)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~h~~~v~~v 139 (268)
.+.+|+. .+.+.+.++++|++.|..+.|.|-|++|++-+.|++|++|+..+-...+.+. ....-......+
T Consensus 152 sViiwn~------~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 152 SVIIWNA------KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred eEEEEcc------ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 4444443 3446788899999999999999999999999999999999965532222221 111224567888
Q ss_pred EEcCCCCEEEEeeC----CCcEEEEECCCcceeeee-ecCCceeEEEEccC------C---------Ce-EEEeecCCCc
Q 024407 140 AKAADGSHFLTGSL----DKSAKLWDARTLELIKTY-VTERPVNAVTMSPL------L---------DH-VVLGGGQDAS 198 (268)
Q Consensus 140 ~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~------~---------~~-~~~~~~~~~~ 198 (268)
.|||||.+|++... -.++.|.+..+-++-..+ .|..++.++.|+|. . .+ ++++++.|..
T Consensus 226 SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS 305 (942)
T KOG0973|consen 226 SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS 305 (942)
T ss_pred ccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc
Confidence 99999999998632 346788887665543333 46667888888762 1 12 4445555543
Q ss_pred eEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCcc
Q 024407 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 264 (268)
Q Consensus 199 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~ 264 (268)
+..|.....+ . + -.+..+.. ..|.+++|+|||..|..+|.||+|.+.+++++-|
T Consensus 306 -lSVW~T~~~R--P-l------~vi~~lf~--~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 306 -LSVWNTALPR--P-L------FVIHNLFN--KSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred -EEEEecCCCC--c-h------hhhhhhhc--CceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 3344321100 0 0 00112222 3699999999999999999999999999997643
No 102
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=4.2e-20 Score=156.53 Aligned_cols=237 Identities=16% Similarity=0.254 Sum_probs=179.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCe-EEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
-|||++.||+|..-|++|+|+++..+....++ |...|.++.++.... .-+++++. -+..+++.+..++. .
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas---rdRlIHV~Dv~rny-----~ 538 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS---RDRLIHVYDVKRNY-----D 538 (1080)
T ss_pred ECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc---CCceEEEEeccccc-----c
Confidence 38999999999999999999999888777766 567788998885321 11222221 24456666655542 3
Q ss_pred eEEEEecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCC----CceeeecccccCcccceEEEEEcCCCCEEEEeeC
Q 024407 80 SVLILKGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTET----GKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
+++.+.+|+..|+++.|--.| ..++++|.|+.|. |+... ++........ .-...+.++++.|...++++++.
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t-~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQT-LSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccc-cccceEEEeeeCCCcceEEEEec
Confidence 566789999999999998887 7889999999874 44432 2221111111 12346889999999999999999
Q ss_pred CCcEEEEECCCcceeeeee----cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccc
Q 024407 154 DKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 229 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h 229 (268)
|..|+|||+.+++..+.+. ++.....+...|.+-+++.+..+... -+++...++++..+.||
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl--------------~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL--------------CFVDFVSGECVAQMTGH 682 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce--------------EEEEeccchhhhhhcCc
Confidence 9999999999999988875 34567778889988877776655432 23444557788888999
Q ss_pred ccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 230 FGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 230 ~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
...|+-+.|.+|.+.|++.+.||-|-||++.-+
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred chheeeeeecccchhheeecCCceEEEEECchh
Confidence 999999999999999999999999999998753
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2e-20 Score=159.45 Aligned_cols=232 Identities=19% Similarity=0.271 Sum_probs=172.8
Q ss_pred CCCEEEEeecCCcEEEeecCC---CcEEEEE-ecCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 5 NSMTLITGSADQTAKLWNVET---GAQLFTF-NFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~---~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
++++|||++..|.|-+||+.. .+++..+ +|...+..++|++-. .+++.++ .++.++.|++....
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS-----QDg~vK~~DlR~~~------ 167 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGS-----QDGTVKCWDLRSKK------ 167 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecC-----CCceEEEEeeeccc------
Confidence 568899999999999999987 4454444 367779999999854 4444333 56778888876542
Q ss_pred eEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 80 SVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
....+.+....|.++.|+|. +..|+++...|.++.||++..+.. .....+|.++|.++.++|++.+||||+.|+.|+
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~--~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vk 245 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC--EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVK 245 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH--HHHhhcccCceEEEeecCCCceeeecCCCccEE
Confidence 34446677888999999995 478999999999999999875432 223458999999999999999999999999999
Q ss_pred EEECCCcc--eeeeeecCCceeEEEEccCCCeEEEe-ecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 159 LWDARTLE--LIKTYVTERPVNAVTMSPLLDHVVLG-GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 159 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
|||+.+.+ .+.++..-.++.++.|.|.-.+.++. +.-....|.+||.+-.-+. ..++..|++.++.
T Consensus 246 iWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP-----------~~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 246 IWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP-----------YATFLEHTDSVTG 314 (839)
T ss_pred EEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc-----------ceeeeccCccccc
Confidence 99998654 33344455689999999976665543 3333456778887633222 2334569999999
Q ss_pred EEECC-CCCeEEeeeCCCeEEEEeeC
Q 024407 236 LAFNP-DGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 236 ~~~sp-~~~~lasgs~Dg~i~i~~~~ 260 (268)
++|.. |-..+.+++.||++.-+.++
T Consensus 315 i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 315 IAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeccCCCceeeEeecCccHHHHhhhh
Confidence 99965 44568899999998665554
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=9.6e-19 Score=141.42 Aligned_cols=245 Identities=16% Similarity=0.263 Sum_probs=168.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCC--CcEEEEEec-CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVET--GAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+|..++|++|+.|+++++|.+.. ...+.++.. ..|+....++|.++..+..+... .....|++... .-
T Consensus 221 FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr----ky~ysyDle~a----k~ 292 (514)
T KOG2055|consen 221 FHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR----KYLYSYDLETA----KV 292 (514)
T ss_pred ecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccc----eEEEEeecccc----cc
Confidence 899999999999999999998753 444555553 68899999999776333332211 12223333110 00
Q ss_pred ceEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 79 ESVLILKGP-QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 79 ~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.++.-+.|+ +..+.....+|++++|+..|..|.|.+.-..++..+..++ ..+.|..+.|+.|+..|++++.+|.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K----ieG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK----IEGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee----eccEEeeEEEecCCcEEEEEcCCceE
Confidence 111112233 3457778899999999999999999999999988887765 45789999999999999999999999
Q ss_pred EEEECCCcceeeeeecCCceeE--EEEccCCCeEEEeecCCCceEEEeccCCCeeee-----------------Eeeeh-
Q 024407 158 KLWDARTLELIKTYVTERPVNA--VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-----------------KFFDK- 217 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-----------------~~~~~- 217 (268)
.+||++...++..+..+..+.. ++.++++.+ ++.|.+.+++..+|...-.... ..|..
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y--lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY--LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCce--EEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 9999999999999887765544 445566553 3445666677776632111100 00000
Q ss_pred h-----------------------hhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 218 I-----------------------LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 218 ~-----------------------~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
. ...++......-+.|+|++|||.+.++|.|.++|.+.+|++.
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 0 000111122333569999999999999999999999999864
No 105
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.85 E-value=2.6e-19 Score=135.59 Aligned_cols=176 Identities=22% Similarity=0.307 Sum_probs=143.8
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEEC
Q 024407 83 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~ 162 (268)
.+.||..+++.+.++.+|.+|.+++.|.++.+|-..+|..+-.. .+|+..|++++.+.+..++++++.|.++++||.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty---~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY---DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee---cCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 46899999999999999999999999999999998888776554 489999999999999999999999999999999
Q ss_pred CCcceeeeeecCCceeEEEEccCCCeEEEeecCCCc---eEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 163 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS---AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
.+++++.++..+.++..+.|++.+..++++.....+ .+...|.+...-. ....+.+..+..+.+.++.+.|+
T Consensus 82 ~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~-----~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 82 ETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD-----IDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred CCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh-----hcccCceEEecCCccceeeeeec
Confidence 999999999999999999999988877776544332 3444443321100 00122234455667889999999
Q ss_pred CCCCeEEeeeCCCeEEEEeeCCCccee
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDPDYFNI 266 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~~~~~~ 266 (268)
|-+++|++|.+||.|.+|++++.+..+
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELV 183 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceee
Confidence 999999999999999999999865543
No 106
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=1.8e-19 Score=143.77 Aligned_cols=225 Identities=24% Similarity=0.334 Sum_probs=161.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|.++++.+++++.|+.+++|++...+....+. |.+++..+.+..+...++.++. +..++.|++.. ..+
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~-----DRtiK~WDl~k------~~C 295 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSA-----DRTIKLWDLQK------AYC 295 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccc-----cchhhhhhhhh------hhe
Confidence 67899999999999999999999888777665 6777888887765543332221 22333333321 112
Q ss_pred EEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 81 VLI-LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
... +.+ ....+++-+ ...+++|=.|+.||+||.++......+. .+ +.|+++..++++..+++++-|.++.+
T Consensus 296 ~kt~l~~--S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~---~g-g~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 296 SKTVLPG--SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP---LG-GRVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred ecccccc--ccccceEec--ceeeeecccccceEEEeccCCceeeEee---cC-cceeeEeeccCCeEEeeecCCCceee
Confidence 111 111 112223322 3456788899999999999988776654 23 48999999999999999999999999
Q ss_pred EECCCcceeeeeecC-----CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccc-cce
Q 024407 160 WDARTLELIKTYVTE-----RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF-GPI 233 (268)
Q Consensus 160 wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v 233 (268)
+|+|+.+....+..+ ...+.+.|+|.+.++++++.+ +.+..|+...+.++..+-. .++ ..|
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d--gsv~iW~v~tgKlE~~l~~-----------s~s~~aI 434 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD--GSVYIWSVFTGKLEKVLSL-----------STSNAAI 434 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCC--CcEEEEEccCceEEEEecc-----------CCCCcce
Confidence 999998887776443 346788999988877765444 3567788777777654311 122 269
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEe
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~ 258 (268)
++++|+|.|.++++++.++.+.+|+
T Consensus 435 ~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 435 TSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999999995
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=2.1e-19 Score=144.78 Aligned_cols=214 Identities=18% Similarity=0.290 Sum_probs=157.3
Q ss_pred EecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC----CCceEEEEecCCCCeEEEEEcCCC-CEEEEE
Q 024407 32 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ----GGESVLILKGPQGRINRAVWGPLN-RTIISA 106 (268)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~ 106 (268)
+.+++.+..+.+.|....+++... -.+.+.+++........ ...+-..|.||+++-+++.|++.. .+++++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t----~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKT----SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecC----CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 457788888888886655444321 23345555554432111 335566899999988999999976 488999
Q ss_pred eCCCcEEEEECCCCce----eeecccccCcccceEEEEEcCCC-CEEEEeeCCCcEEEEECCCc--ceeeee-ecCCcee
Q 024407 107 GEDAIVRIWDTETGKL----LKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTL--ELIKTY-VTERPVN 178 (268)
Q Consensus 107 ~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~iwd~~~~--~~~~~~-~~~~~~~ 178 (268)
+.|+.|++||+..... +.......+|...|..++|++-. ..+++++.|+.+.|||+|+. ++.... .+..+++
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 9999999999976432 22222346899999999999754 46789999999999999952 222222 3567899
Q ss_pred EEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC-CeEEeeeCCCeEEEE
Q 024407 179 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGEDGYVRLH 257 (268)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~lasgs~Dg~i~i~ 257 (268)
+++|+|....++++++.+. .+..||.|.... .+..+.+|...|.++.|||+. ..|||++.|+.+.||
T Consensus 277 ~~~fnp~~~~ilAT~S~D~-tV~LwDlRnL~~-----------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADK-TVALWDLRNLNK-----------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW 344 (422)
T ss_pred EEEeCCCCCceEEeccCCC-cEEEeechhccc-----------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence 9999999888887776664 577888774332 345678899999999999976 679999999999999
Q ss_pred eeCC
Q 024407 258 HFDP 261 (268)
Q Consensus 258 ~~~~ 261 (268)
++..
T Consensus 345 Dls~ 348 (422)
T KOG0264|consen 345 DLSR 348 (422)
T ss_pred eccc
Confidence 9863
No 108
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.8e-19 Score=138.34 Aligned_cols=166 Identities=25% Similarity=0.424 Sum_probs=135.5
Q ss_pred EecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc----------eee--ecccccCcccceEEEEEcC-CCCEEE
Q 024407 84 LKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGK----------LLK--ESDKETGHKKTITSLAKAA-DGSHFL 149 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~----------~~~--~~~~~~~h~~~v~~v~~s~-~~~~l~ 149 (268)
.+.|.+.|+.+...| .|+++++|+.||.|.+||++... ..+ ......+|+..|..+.|-| |.-++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 346889999999987 47899999999999999998632 111 1123468999999998887 556788
Q ss_pred EeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCC-eEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccc
Q 024407 150 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 228 (268)
Q Consensus 150 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
+++-|.++++||..+.+..-.+..+..+..-+++|.-. +++++.+.+...+..-|...|.+. ..+.|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s------------H~LsG 186 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS------------HTLSG 186 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce------------eeecc
Confidence 99999999999999988888888888888888888644 678888888777877777776653 34689
Q ss_pred cccceEEEEECCCCCe-EEeeeCCCeEEEEeeCC
Q 024407 229 HFGPINALAFNPDGKS-FSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~-lasgs~Dg~i~i~~~~~ 261 (268)
|+..|.++.|+|...+ |||||.||.||+|+++-
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr 220 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR 220 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence 9999999999999887 88999999999999874
No 109
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.84 E-value=3.3e-20 Score=139.28 Aligned_cols=231 Identities=19% Similarity=0.266 Sum_probs=166.6
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcC-CCcccccceEeeeeeeCCCCCCCce
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
.|+|=+|+|++.|+.=.+=+-++|.=+-.|. |.+.+-...+..+...++.+.+ -...+|..+ ++..
T Consensus 26 tp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~------------tgde 93 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV------------TGDE 93 (334)
T ss_pred CCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh------------hhhh
Confidence 3688899999999988877777887777776 4444433333322222222221 112222222 2222
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
++.+ .|..-|..++|+.|.++|++|+.++.+||||++..+.. .....+|+..|..+.|......+++++.|++||+|
T Consensus 94 lhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap--p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW 170 (334)
T KOG0278|consen 94 LHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLW 170 (334)
T ss_pred hhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC--chhhcCCCCcceeEEEeccCceEEeeccCCceEEE
Confidence 3333 46667889999999999999999999999999876532 33345899999999999888899999999999999
Q ss_pred ECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC
Q 024407 161 DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240 (268)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 240 (268)
|.|++..++++..+.++.++..++++.++.++-+. .+..||...-.. +..++ -+..|.+..++|
T Consensus 171 D~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gs---sV~Fwdaksf~~------------lKs~k-~P~nV~SASL~P 234 (334)
T KOG0278|consen 171 DHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGS---SVKFWDAKSFGL------------LKSYK-MPCNVESASLHP 234 (334)
T ss_pred EeccCcEEEEEecCCCCcceeeccCCCEEEEecCc---eeEEeccccccc------------eeecc-CccccccccccC
Confidence 99999999999999999999999998887775433 355555432111 11111 124699999999
Q ss_pred CCCeEEeeeCCCeEEEEeeCCCcc
Q 024407 241 DGKSFSSGGEDGYVRLHHFDPDYF 264 (268)
Q Consensus 241 ~~~~lasgs~Dg~i~i~~~~~~~~ 264 (268)
+...++.|++|..++.|+|+.+..
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred CCceEEecCcceEEEEEeccCCce
Confidence 999999999999999999887643
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=5.8e-19 Score=142.56 Aligned_cols=241 Identities=18% Similarity=0.241 Sum_probs=165.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE-e------------------cCCCceeeeeecCCeEEEEEcCCCccccc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF-N------------------FDSPARSVDFAVGDKLAVITTDPFMELNS 62 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (268)
++||..+.+++|.|++|.=|++.+++....+ + |...+..++++++++.++.+. .+.
T Consensus 150 ls~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg-----~d~ 224 (479)
T KOG0299|consen 150 LSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGG-----RDR 224 (479)
T ss_pred eeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecC-----CCc
Confidence 6899999999999999999999888754211 1 112233444444444433322 233
Q ss_pred ceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc
Q 024407 63 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 142 (268)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s 142 (268)
.+++|. ..+.+++..+++|.+.|.+++|-.....+++++.|.+|++|++.....+..+ -+|+..|.++...
T Consensus 225 ~v~Iw~------~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl---yGHqd~v~~IdaL 295 (479)
T KOG0299|consen 225 HVQIWD------CDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL---YGHQDGVLGIDAL 295 (479)
T ss_pred eEEEec------CcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH---hCCccceeeechh
Confidence 444544 4566788889999999999999888889999999999999999875544433 3899999999877
Q ss_pred CCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhh
Q 024407 143 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 222 (268)
Q Consensus 143 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 222 (268)
.-...+-+++.|+++++|++-....+-...++..+.++++-.+ .+++++ .+.+.|..|+.....- +|.....+.
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsG--SdnG~IaLWs~~KKkp---lf~~~~AHg 369 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSG--SDNGSIALWSLLKKKP---LFTSRLAHG 369 (479)
T ss_pred cccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeec--cCCceEEEeeecccCc---eeEeecccc
Confidence 6666666667999999999943222212234556778887664 445543 4455677776543321 111111211
Q ss_pred hccc---cccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 223 IGGV---KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 223 ~~~~---~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+... ..+..+|++++..|....+||||.+|.||+|...++
T Consensus 370 v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 1111 223358999999999999999999999999999976
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.8e-19 Score=147.92 Aligned_cols=240 Identities=22% Similarity=0.309 Sum_probs=168.8
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEE--EcCCC-cccccceE----e----eeeee
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI--TTDPF-MELNSAIH----V----KRIAR 71 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~----~----~~~~~ 71 (268)
+|.|..|+|||.||+||+|.+.+|++++.+..++.|.+++|.|...+.++ +.+.. +.++.... . ..+..
T Consensus 409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~ 488 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLAS 488 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhc
Confidence 46788999999999999999999999999999999999999997654333 32221 11111110 0 00000
Q ss_pred C---CC-------------CCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeecccccCc
Q 024407 72 D---PA-------------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGED---AIVRIWDTETGKLLKESDKETGH 132 (268)
Q Consensus 72 ~---~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h 132 (268)
. .. .+....++..-.|.++|+.+.|+..|.||++...+ ..|.|.++..++...-+.. .
T Consensus 489 ~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k---s 565 (733)
T KOG0650|consen 489 APNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK---S 565 (733)
T ss_pred CCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhh---c
Confidence 0 00 01111233444678899999999999999988654 5688999877665443332 3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecC-CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee
Q 024407 133 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 211 (268)
Q Consensus 133 ~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 211 (268)
...|.++.|+|...+|+.|+. ..|++||+-..+.++++... ..+..++.+|.|+.+++++ .+...++. |..-.
T Consensus 566 kG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs-~d~k~~Wf-Dldls--- 639 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-YDKKMCWF-DLDLS--- 639 (733)
T ss_pred CCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-CCCeeEEE-EcccC---
Confidence 467889999999999999887 67999999988887776543 3577889999988877764 34343332 21100
Q ss_pred eEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 212 AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
....+++.-|...|.+++|++.-..|+||+.||++.||+-
T Consensus 640 --------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 640 --------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred --------cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 1123345678899999999999999999999999999763
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=2e-19 Score=146.96 Aligned_cols=228 Identities=17% Similarity=0.228 Sum_probs=169.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCC--C-ceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDS--P-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
..|||+.|++|+.-.++.|||+...+.....+... + -..++.+|+.+++..++ .++.+.+|++.. .
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFscc-----sdGnI~vwDLhn------q 541 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCC-----SDGNIAVWDLHN------Q 541 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeec-----cCCcEEEEEccc------c
Confidence 46899999999999999999998776544444322 1 23455667777766554 355677777643 3
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
..+..++||++.+.|+.++++|..|-|||-|++||-||+++++...+.. ..++|.++.++|.+..++.+=.++.+-
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCPTGDWLAVGMENSNVE 617 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCCCccceeeecccCcEE
Confidence 4567799999999999999999999999999999999999987654432 468899999999999999999999887
Q ss_pred EEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 159 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
+-.....+.-+...++.-+..+.|.+.+..++..+.++ .+..|...-|. ..|.. ...+.|.++..
T Consensus 618 vlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDn--lLnawrtPyGa---siFqs----------kE~SsVlsCDI 682 (705)
T KOG0639|consen 618 VLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN--LLNAWRTPYGA---SIFQS----------KESSSVLSCDI 682 (705)
T ss_pred EEecCCccceeecccccEEEEEEecccCceeeecCchh--hhhhccCcccc---ceeec----------cccCcceeeee
Confidence 77665544333334566678889999988776655443 23444332221 12211 12467999999
Q ss_pred CCCCCeEEeeeCCCeEEEEee
Q 024407 239 NPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 239 sp~~~~lasgs~Dg~i~i~~~ 259 (268)
|.|.+||+|||.|....||++
T Consensus 683 S~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 683 SFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCceEEEecCCCcceEEEEE
Confidence 999999999999999999875
No 113
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=4e-18 Score=146.62 Aligned_cols=161 Identities=16% Similarity=0.227 Sum_probs=130.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCccee
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 168 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 168 (268)
..+++++.++.|+..+.|+..|.|-+|++.+|-....+.....|..+|++++...-+..+++++.+|-+++||+++...+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 55788999999999999999999999999999877777555689999999999988889999999999999999998877
Q ss_pred eeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEee
Q 024407 169 KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 248 (268)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasg 248 (268)
..+.....+..+..+...+.++++.++ ..|. ++|......++.+.||.+.|++++|||||++|+++
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~dd--f~I~------------vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDD--FSIR------------VVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCc--eeEE------------EEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence 777777777777776654444333222 2222 33333333456678999999999999999999999
Q ss_pred eCCCeEEEEeeCCCc
Q 024407 249 GEDGYVRLHHFDPDY 263 (268)
Q Consensus 249 s~Dg~i~i~~~~~~~ 263 (268)
+.|++||+|++...+
T Consensus 595 smD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGT 609 (910)
T ss_pred ecCCcEEEEeccCcc
Confidence 999999999988654
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2e-19 Score=141.39 Aligned_cols=223 Identities=18% Similarity=0.256 Sum_probs=155.4
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEec
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 86 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (268)
..++|+|.|+|||.|.++- ....++-.+..+..++-+......+.++ ..+.+|+..++ .|+..+.=
T Consensus 120 ~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcG-------e~i~IWD~~R~------~Pv~smsw 185 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCG-------EQIDIWDEQRD------NPVSSMSW 185 (433)
T ss_pred cceEEecCCcceeeeeccC-CcceeeeccccccccccccccccccccC-------ceeeecccccC------Cccceeec
Confidence 4689999999999999765 4666666566666666554433332221 23455655443 35555665
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc
Q 024407 87 PQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 87 ~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~ 165 (268)
....|.++.|+|.- ..|++|+.|+.|.+||++++.+++.+.. .-.-+.++|.|+.-.+++|+.|..+.+||+|..
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee----eccccceecCccccceeeccccccceehhhhhh
Confidence 67789999999976 4677888999999999999988765542 334567899998888999999999999999975
Q ss_pred ce-eeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC
Q 024407 166 EL-IKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 243 (268)
Q Consensus 166 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 243 (268)
+. +..+ .+...+..+.++|.|..++.++-+...-|.-.+....+- .+.. ..-..|.|+.||-|.+
T Consensus 262 ~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd---iYht----------kRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 262 SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD---IYHT----------KRMQHVFCVKYSMDSK 328 (433)
T ss_pred cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh---hhhH----------hhhheeeEEEEecccc
Confidence 43 2222 234478889999999888876654433333322221110 0000 0113599999999999
Q ss_pred eEEeeeCCCeEEEEeeC
Q 024407 244 SFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 244 ~lasgs~Dg~i~i~~~~ 260 (268)
|++|||.|+.||+|+..
T Consensus 329 yi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAK 345 (433)
T ss_pred EEEecCCCcceeeeecc
Confidence 99999999999999754
No 115
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.6e-19 Score=147.89 Aligned_cols=206 Identities=25% Similarity=0.390 Sum_probs=144.6
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
.|.|-...|+||+.|+++++|++++.. .+. ....++
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~-----~s~---------------------------------------~~~~ep 336 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAK-----KSA---------------------------------------EKDVEP 336 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccC-----Ccc---------------------------------------ccceee
Confidence 378888899999999999999985411 000 012357
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee-------ecccccCcccceEEEEEcCCCCEEEEeeC
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK-------ESDKETGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
+..+++|.++|.|++..+.+.++++||-||+|+-|++....... -.....||...|+.+++++....|++++.
T Consensus 337 i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~ 416 (577)
T KOG0642|consen 337 ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS 416 (577)
T ss_pred eEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC
Confidence 88899999999999999999999999999999999765321110 01123589999999999999999999999
Q ss_pred CCcEEEEECCCcceeeeeec----C-------------------------------------------------CceeEE
Q 024407 154 DKSAKLWDARTLELIKTYVT----E-------------------------------------------------RPVNAV 180 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~~----~-------------------------------------------------~~~~~~ 180 (268)
||++++|+...... .++.. . ..++.+
T Consensus 417 DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 417 DGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV 495 (577)
T ss_pred CceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence 99999999765433 11100 0 001111
Q ss_pred EEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 181 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.++|..+. .+.. +.. ...++++...+..+.....|...|+++++.|+|.+|++|+.||.+++|+++
T Consensus 496 Vs~~~~~~-~~~~-----------hed--~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 496 VSHPTADI-TFTA-----------HED--RSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred EecCCCCe-eEec-----------ccC--CceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 22221111 0000 001 123455555555566677899999999999999999999999999999997
Q ss_pred CCcce
Q 024407 261 PDYFN 265 (268)
Q Consensus 261 ~~~~~ 265 (268)
.+.-+
T Consensus 562 ~k~~~ 566 (577)
T KOG0642|consen 562 VKTCV 566 (577)
T ss_pred chhee
Confidence 66443
No 116
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3e-18 Score=132.26 Aligned_cols=202 Identities=19% Similarity=0.389 Sum_probs=131.6
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
.|.+.|+.+||||.|+++|+||..+.+..+. +
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~------------------------------------------------~ 51 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWS------------------------------------------------C 51 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCCCCceE------------------------------------------------E
Confidence 3788999999999999999999754432221 1
Q ss_pred EEEEecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCC------CceeeecccccCcccceEEEEEcCC--CCEEEE
Q 024407 81 VLILKGPQGRINRAVWGP--LNRTIISAGEDAIVRIWDTET------GKLLKESDKETGHKKTITSLAKAAD--GSHFLT 150 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s 150 (268)
....+.|.+.|..+.|-+ -|+.+++++.|+++.||.-.. ++...........++.|++|.|.|. |-.+++
T Consensus 52 Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~ 131 (361)
T KOG2445|consen 52 TSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA 131 (361)
T ss_pred eeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE
Confidence 223567888888888854 478899999999999997621 1111111111235678999999984 668999
Q ss_pred eeCCCcEEEEECCCcceeeee------e--------cCCceeEEEEccCC---CeEEEeecCCC-----ceEEEeccCCC
Q 024407 151 GSLDKSAKLWDARTLELIKTY------V--------TERPVNAVTMSPLL---DHVVLGGGQDA-----SAVTTTDHRAG 208 (268)
Q Consensus 151 ~~~d~~i~iwd~~~~~~~~~~------~--------~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~i~~~d~~~~ 208 (268)
++.||.||||+.-..--+..+ . ...+..++.|+|.- ..+++++..+. ..|+-.+....
T Consensus 132 ~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r 211 (361)
T KOG2445|consen 132 ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR 211 (361)
T ss_pred eccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc
Confidence 999999999986543221211 1 23356778887631 23333332211 11221111110
Q ss_pred eeeeEeeehhhhhhhccccccccceEEEEECCCC----CeEEeeeCCCeEEEEeeCC
Q 024407 209 KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG----KSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~----~~lasgs~Dg~i~i~~~~~ 261 (268)
.+ ..+.++.+|+.+|.+++|.|+- ..||+++.|| |+||++..
T Consensus 212 Kw----------~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 212 KW----------LKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred ee----------eeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 11 1234567899999999999963 3599999999 99999874
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.6e-20 Score=156.86 Aligned_cols=221 Identities=25% Similarity=0.412 Sum_probs=171.7
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
.++.+++|+.|..+-+|.+.+.-.+..+ .|..+|.++.|++...++.++.+ .+.+++|++. ..+.++.
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsa-----sgtiK~wDle------eAk~vrt 107 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSA-----SGTIKVWDLE------EAKIVRT 107 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccccc-----CCceeeeehh------hhhhhhh
Confidence 3567999999999999999887666664 57889999999987766555443 3456666664 4566778
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
|-||...+.++.|+|-+.++++|+.|+.+++||.+...+..... +|...|..+.|+|+|.++++++.|.+++|||+.
T Consensus 108 Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 108 LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT 184 (825)
T ss_pred hhccccCcceeeeccceEEeccccccccceehhhhccCceeeec---CCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence 88999999999999999999999999999999998655555443 588889999999999999999999999999999
Q ss_pred Ccceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 164 TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
.++....|. ++..+..+.++|. +.++..++.+ ..+..||.++-.. +.........|.+++|+|++
T Consensus 185 agk~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d-~tv~f~dletfe~------------I~s~~~~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 185 AGKLSKEFKSHEGKVQSLEFHPL-EVLLAPGSSD-RTVRFWDLETFEV------------ISSGKPETDGVRSLAFNPDG 250 (825)
T ss_pred ccccccccccccccccccccCch-hhhhccCCCC-ceeeeeccceeEE------------eeccCCccCCceeeeecCCc
Confidence 999988876 6778888899985 3444444443 4566666542111 12222335679999999999
Q ss_pred CeEEeeeCCCe
Q 024407 243 KSFSSGGEDGY 253 (268)
Q Consensus 243 ~~lasgs~Dg~ 253 (268)
+.+++|.++..
T Consensus 251 ~~~~~G~q~sl 261 (825)
T KOG0267|consen 251 KIVLSGEQISL 261 (825)
T ss_pred eeeecCchhhh
Confidence 99999887643
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=134.15 Aligned_cols=176 Identities=23% Similarity=0.367 Sum_probs=130.0
Q ss_pred CCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee
Q 024407 73 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS 152 (268)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~ 152 (268)
+.-++++.+..|.||..+.+.++-+|..+.+++++.|.+.|+||.+ ..+..+....||+..|+++.|..+ ..+++++
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgS 375 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGS 375 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEecC-CceeecC
Confidence 3446788999999999999999999999999999999999999998 345555556799999999999765 4688999
Q ss_pred CCCcEEEEECCCc-ceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 153 LDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 153 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
.|.+|++||+|+. ..+.++....+++.++.+..+..+++ -.++..+..+|...-++ +++ + ...-++|..
T Consensus 376 DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAi--PhDNRqvRlfDlnG~Rl-aRl-----P--rtsRqgHrR 445 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAI--PHDNRQVRLFDLNGNRL-ARL-----P--RTSRQGHRR 445 (481)
T ss_pred CCceEEEeeeccccCcceeeecCCccceeEeecCCceEEe--ccCCceEEEEecCCCcc-ccC-----C--cccccccce
Confidence 9999999999985 35666666777787777664333332 34444455444322111 000 0 113468999
Q ss_pred ceEEEEECCCCC--eEEeeeCCCeEEEEeeCC
Q 024407 232 PINALAFNPDGK--SFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 232 ~v~~~~~sp~~~--~lasgs~Dg~i~i~~~~~ 261 (268)
-|+|++|..+.. -|.+++-|..+-=|.+..
T Consensus 446 MV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 446 MVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred eeeeeeccccCcccccccccccceeeeeEecc
Confidence 999999987653 488999999988887653
No 119
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3.9e-18 Score=135.56 Aligned_cols=201 Identities=21% Similarity=0.303 Sum_probs=141.5
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|.| +...+||||.|.+|++|.+-.+-+.. ...++
T Consensus 89 w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---------------------------------------------~ltep 123 (472)
T KOG0303|consen 89 WCPFNDCVIASGSEDTKVMVWQIPENGLTR---------------------------------------------DLTEP 123 (472)
T ss_pred cCccCCceeecCCCCceEEEEECCCccccc---------------------------------------------Ccccc
Confidence 444 45679999999999999876543321 11256
Q ss_pred EEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 81 VLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
+..|.||+..|.-+.|+|.- +.|+++|.|++|.+|++.++.....+. |+..|.++.|+.||+.|++.+.|..|++
T Consensus 124 vv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs~l~TtckDKkvRv 199 (472)
T KOG0303|consen 124 VVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNRDGSLLCTTCKDKKVRV 199 (472)
T ss_pred eEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEeccCCceeeeecccceeEE
Confidence 77789999999999999976 678999999999999999998766543 9999999999999999999999999999
Q ss_pred EECCCcceeeeee-cC-CceeEEEEccCCCeEEEeecCCC--ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 160 WDARTLELIKTYV-TE-RPVNAVTMSPLLDHVVLGGGQDA--SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 160 wd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
||.|+++.+..-. ++ .....+.|-.++. ++.++.... ..+..||.....-.. .+.++. -++.|.=
T Consensus 200 ~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~---------~~~elD-tSnGvl~ 268 (472)
T KOG0303|consen 200 IDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPI---------ALQELD-TSNGVLL 268 (472)
T ss_pred EcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcc---------eeEEec-cCCceEE
Confidence 9999998877642 22 2344555655555 333322221 234445433211110 011122 2345555
Q ss_pred EEECCCCCeEE-eeeCCCeEEEEeeCCC
Q 024407 236 LAFNPDGKSFS-SGGEDGYVRLHHFDPD 262 (268)
Q Consensus 236 ~~~sp~~~~la-sgs~Dg~i~i~~~~~~ 262 (268)
-=|.||...+. +|-.|+.||-|.+.+|
T Consensus 269 PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 269 PFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeecCCCCEEEEEecCCcceEEEEecCC
Confidence 56778887755 5668999999999887
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.7e-19 Score=153.84 Aligned_cols=159 Identities=19% Similarity=0.366 Sum_probs=124.3
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEEEECCCcceee
Q 024407 92 NRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIK 169 (268)
Q Consensus 92 ~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~ 169 (268)
.++.|+. +.++|++++..|.|-+||+...-.-+.+....+|.-.+++++|++ ..++|++|+.||+|++||+|..+...
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 3456764 357899999999999999976211222223457999999999996 56789999999999999999877666
Q ss_pred eee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEee
Q 024407 170 TYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 248 (268)
Q Consensus 170 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasg 248 (268)
++. ....+..+.|+|.....+++ ..+++.+..||.|.. .....++.+|.++|.|+.|+|++.+||||
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s-~~dsG~lqlWDlRqp-----------~r~~~k~~AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFAS-IHDSGYLQLWDLRQP-----------DRCEKKLTAHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred cccccchhhhceeeccCCCceEEE-ecCCceEEEeeccCc-----------hhHHHHhhcccCceEEEeecCCCceeeec
Confidence 654 34578999999976655554 567778888887632 22334567999999999999999999999
Q ss_pred eCCCeEEEEeeCCC
Q 024407 249 GEDGYVRLHHFDPD 262 (268)
Q Consensus 249 s~Dg~i~i~~~~~~ 262 (268)
|.|++|+||.+.+.
T Consensus 239 GRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDS 252 (839)
T ss_pred CCCccEEEEeccCC
Confidence 99999999999843
No 121
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-17 Score=139.50 Aligned_cols=226 Identities=17% Similarity=0.292 Sum_probs=167.7
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEec-CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEe
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 85 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (268)
+.|+.|.. ..|.+|+..+++....... ...+.++.|++.+..++++. ..+.+.+|+.. ..+.+..+.
T Consensus 189 n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~-----~~g~v~iwD~~------~~k~~~~~~ 256 (484)
T KOG0305|consen 189 NVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGT-----SDGTVQIWDVK------EQKKTRTLR 256 (484)
T ss_pred CeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEee-----cCCeEEEEehh------hcccccccc
Confidence 45666555 5899999998886555554 67799999998666555443 23455555543 234455667
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCC
Q 024407 86 G-PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 86 ~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~ 164 (268)
+ |...|-+++|. +..+.+|+.|+.|..+|++..+.... ...+|...|..++|++|+.++++++.|+.+.|||...
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence 7 89999999998 57889999999999999998766544 2457999999999999999999999999999999976
Q ss_pred cceeeee-ecCCceeEEEEccCCCeEEEee-cCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 165 LELIKTY-VTERPVNAVTMSPLLDHVVLGG-GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 165 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
.+...++ .+...+.+++|+|....+++.+ |.....+..||...+... ..+.. .+.|.+|.|++..
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i------------~~vdt-gsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI------------DSVDT-GSQVCSLIWSKKY 399 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe------------ccccc-CCceeeEEEcCCC
Confidence 6655554 4566899999999877766554 444455666666654432 22221 2579999999999
Q ss_pred CeEEeee--CCCeEEEEeeCC
Q 024407 243 KSFSSGG--EDGYVRLHHFDP 261 (268)
Q Consensus 243 ~~lasgs--~Dg~i~i~~~~~ 261 (268)
+.|+++. .+..|.||++..
T Consensus 400 kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred CEEEEecCCCCCcEEEEeccc
Confidence 8877654 567899999964
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.81 E-value=2.5e-18 Score=145.19 Aligned_cols=219 Identities=26% Similarity=0.381 Sum_probs=153.4
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
|.-.|++|+.|.++.+|.+....+...++ |..-+.++.-..... ++++ .+++...+|++. ++...
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSg----SWD~TakvW~~~--------~l~~~ 135 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISG----SWDSTAKVWRIG--------ELVYS 135 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc--eEec----ccccceEEecch--------hhhcc
Confidence 44569999999999999999888887775 444455554322222 2221 246667777653 34455
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
+.||+..|..+..-|++ .++|||.|++||+|.- ++..+.+ .+|...|..+++-++ ..+++|+.||.|++|++
T Consensus 136 l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf---~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~- 207 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTF---SGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL- 207 (745)
T ss_pred cCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhh---ccchhheeeeEEecC-CCeEeecCCceEEEEec-
Confidence 89999999999998987 7899999999999976 4444444 589999999998765 46999999999999999
Q ss_pred Ccceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 164 TLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 164 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
+++++..+ .+..-+.++.....++.++.+ |.+.. +..|+.. +..+.+.-....|+++.+-++|
T Consensus 208 ~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~-gEDrt-lriW~~~--------------e~~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 208 DGEVLLEMHGHTNFVYSISMALSDGLIVST-GEDRT-LRIWKKD--------------ECVQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred cCceeeeeeccceEEEEEEecCCCCeEEEe-cCCce-EEEeecC--------------ceEEEEecCccceEEEEEeeCC
Confidence 45655543 455667788866655555544 44432 3444332 1122222223479999988887
Q ss_pred CeEEeeeCCCeEEEEeeCCC
Q 024407 243 KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 243 ~~lasgs~Dg~i~i~~~~~~ 262 (268)
. |++|+.||.||||..+.+
T Consensus 272 D-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 272 D-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred C-EEEeccCceEEEEEeccc
Confidence 7 566888999999988754
No 123
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=1e-17 Score=140.39 Aligned_cols=247 Identities=15% Similarity=0.219 Sum_probs=159.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEE---EEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCC--C--
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLF---TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP--A-- 74 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-- 74 (268)
|-|-...|+++++|.|+|+||++..+.+- .+.|...+.+++|++.+..+.+.... +..+.+|++.... .
T Consensus 108 wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR----Dg~illWD~R~n~~d~~e 183 (720)
T KOG0321|consen 108 WAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGR----DGEILLWDCRCNGVDALE 183 (720)
T ss_pred cCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccC----CCcEEEEEEeccchhhHH
Confidence 45666789999999999999999887654 35688899999999865543332221 3344445443221 0
Q ss_pred ---------CCC--------CceEEEEecCCCCeEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCceeeeccc-----
Q 024407 75 ---------DQG--------GESVLILKGPQGRINR---AVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDK----- 128 (268)
Q Consensus 75 ---------~~~--------~~~~~~~~~~~~~v~~---~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~----- 128 (268)
..+ .+.+..-+++.+.|.+ +.+..|...|+++|. |+.|++||++..........
T Consensus 184 ~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~ 263 (720)
T KOG0321|consen 184 EFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDK 263 (720)
T ss_pred HHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccC
Confidence 000 1222334456666665 555567788888887 99999999998655432221
Q ss_pred ccCc---ccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce--eeeeec---CCceeEEEEccCCCeEEEeecCCCceE
Q 024407 129 ETGH---KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAV 200 (268)
Q Consensus 129 ~~~h---~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i 200 (268)
...| ...++++....-|.+|.+.+.|++|.+|++++... +..+.. ......-..+|++.+++.+..+...++
T Consensus 264 ~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayi 343 (720)
T KOG0321|consen 264 YPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYI 343 (720)
T ss_pred ccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceee
Confidence 1123 23577777777889998888899999999987432 111111 112233346787777777666655554
Q ss_pred EEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC-CeEEeeeCCCeEEEEeeCCCcce
Q 024407 201 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHFDPDYFN 265 (268)
Q Consensus 201 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~lasgs~Dg~i~i~~~~~~~~~ 265 (268)
+..+.- ......+.+|.-.|++++|.|.. .-+|+++.|-.++||++.++-.+
T Consensus 344 w~vs~~-------------e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 344 WVVSSP-------------EAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred eeecCc-------------cCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence 433211 11223467899999999998854 33777899999999999765433
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=3.6e-16 Score=127.49 Aligned_cols=235 Identities=17% Similarity=0.180 Sum_probs=154.6
Q ss_pred CCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEe
Q 024407 6 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 85 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (268)
+.+++|++.|+++++||+.+++.+..+.....+..+.+++++..+++.... ...+.+++. .+++.+..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~----~~~v~~~d~------~~~~~~~~~~ 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASD----SDTIQVIDL------ATGEVIGTLP 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECC----CCeEEEEEC------CCCcEEEecc
Confidence 467999999999999999999888888766667788999877654333211 223333332 2233444454
Q ss_pred cCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC-cEEEEECC
Q 024407 86 GPQGRINRAVWGPLNRTIIS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDAR 163 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~-~i~iwd~~ 163 (268)
.+. .+..+.|+|+++.+++ ++.|+.|++||+++++.+..+. +...+.+++++|++..+++++.++ .+.+||.+
T Consensus 71 ~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~----~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 71 SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP----VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee----CCCCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 443 3567899999997754 4578999999999877665443 223467899999999999888775 46778998
Q ss_pred CcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC
Q 024407 164 TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 243 (268)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 243 (268)
+++.+...........+.++|++..+++++..+ ..+..||...+.....+ +...+ . ..........++|+|+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~v~i~d~~~~~~~~~~-~~~~~-~---~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG-GTVSVIDVATRKVIKKI-TFEIP-G---VHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC-CEEEEEEcCcceeeeee-eeccc-c---cccccCCccceEECCCCC
Confidence 887766554444567788999877766554333 45677777665432221 10000 0 000011234688999999
Q ss_pred eEE-eeeCCCeEEEEeeCC
Q 024407 244 SFS-SGGEDGYVRLHHFDP 261 (268)
Q Consensus 244 ~la-sgs~Dg~i~i~~~~~ 261 (268)
+++ +.+.++.+.+|+.+.
T Consensus 220 ~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 220 TAFVALGPANRVAVVDAKT 238 (300)
T ss_pred EEEEEcCCCCeEEEEECCC
Confidence 844 345567899998763
No 125
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.5e-18 Score=138.33 Aligned_cols=164 Identities=26% Similarity=0.340 Sum_probs=130.0
Q ss_pred ecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEEEEC
Q 024407 85 KGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 85 ~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iwd~ 162 (268)
.+|+..|.++.|+-.-+ .|++||.|.+|++||+.++++...+. -|...|.++.|.| .+.+|++++.|+++.+.|.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~---~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT---HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh---hcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 47888888888887664 67899999999999999999877664 4889999999996 5778999999999999999
Q ss_pred CCcc-eeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC
Q 024407 163 RTLE-LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241 (268)
Q Consensus 163 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 241 (268)
|... .-..+.....+..+.|.|.....++++..+ +.+...|.|... ..+-+++.|.++|.++.+++.
T Consensus 317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd-G~v~~~D~R~~~-----------~~vwt~~AHd~~ISgl~~n~~ 384 (463)
T KOG0270|consen 317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD-GTVYYFDIRNPG-----------KPVWTLKAHDDEISGLSVNIQ 384 (463)
T ss_pred cCccccCceEEeccceEEEEecCCCceeEEEecCC-ceEEeeecCCCC-----------CceeEEEeccCCcceEEecCC
Confidence 9522 223345566788999999877777776444 456666665432 233456789999999999987
Q ss_pred CC-eEEeeeCCCeEEEEeeCCCc
Q 024407 242 GK-SFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 242 ~~-~lasgs~Dg~i~i~~~~~~~ 263 (268)
-. .++|+|.|+++++|.++...
T Consensus 385 ~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 385 TPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred CCcceeeccccceEEEEeecCCC
Confidence 64 58899999999999998763
No 126
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.80 E-value=1.1e-18 Score=142.93 Aligned_cols=174 Identities=20% Similarity=0.282 Sum_probs=126.9
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------------C-------------
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET---------------------------G------------- 120 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------------------------~------------- 120 (268)
-..+++|+.-|..+.+.|.|-+|++||.|.+|++||+.- +
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 345788999999999999999999999999999999741 0
Q ss_pred ----------------ceeeecccccCcccceEEEEEcCCC-CEEEEeeCCCcEEEEECCCcce----eeeeec---CCc
Q 024407 121 ----------------KLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLEL----IKTYVT---ERP 176 (268)
Q Consensus 121 ----------------~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~iwd~~~~~~----~~~~~~---~~~ 176 (268)
+.+..+....||.+.+++.+|+|+. +.+++++.||++++||+.+.+. +.+... ..+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 0011111226899999999999965 4689999999999999987532 222111 235
Q ss_pred eeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc--ceEEEEECCCCCeEEeeeCCCeE
Q 024407 177 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG--PINALAFNPDGKSFSSGGEDGYV 254 (268)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~lasgs~Dg~i 254 (268)
+..++|++++..++.++.++ .|..|+.+..-....+ ..-.+|.. .|+|++||+||++|+|=|.|+++
T Consensus 320 ~tsC~~nrdg~~iAagc~DG--SIQ~W~~~~~~v~p~~---------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDG--SIQIWDKGSRTVRPVM---------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred ceeeecCCCcchhhhcccCC--ceeeeecCCcccccce---------EeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 77889999987766555444 5666665432222211 11245765 79999999999999999999999
Q ss_pred EEEeeCCCcce
Q 024407 255 RLHHFDPDYFN 265 (268)
Q Consensus 255 ~i~~~~~~~~~ 265 (268)
++|.+++-..-
T Consensus 389 KvWDLrq~kkp 399 (641)
T KOG0772|consen 389 KVWDLRQFKKP 399 (641)
T ss_pred eeeeccccccc
Confidence 99999975443
No 127
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=1.1e-17 Score=128.86 Aligned_cols=206 Identities=17% Similarity=0.270 Sum_probs=143.1
Q ss_pred CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 024407 35 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 114 (268)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 114 (268)
+..|..+.|+|....+++++ ..++.+++|.+.... ...+ .....|.++|.+++|+.||..+++|+.|+.+++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~----SWD~tVR~wevq~~g-~~~~---ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAG----SWDGTVRIWEVQNSG-QLVP---KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred ccchheeEeccccCceEEec----ccCCceEEEEEecCC-cccc---hhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 45588999999554444332 256677777775421 0111 234568999999999999999999999999999
Q ss_pred EECCCCceeeecccccCcccceEEEEEcCCCC--EEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEe
Q 024407 115 WDTETGKLLKESDKETGHKKTITSLAKAADGS--HFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 115 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (268)
||+.+++... + ..|..+|..+.|-+... .|+|+++|++|+.||+|....+.++..+..+.++..- ....+++
T Consensus 99 wDL~S~Q~~~-v---~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVa 172 (347)
T KOG0647|consen 99 WDLASGQVSQ-V---AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVA 172 (347)
T ss_pred EEccCCCeee-e---eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEE
Confidence 9999996543 2 25999999999887655 7999999999999999998888888777666665533 2344444
Q ss_pred ecCCCceEEEeccCCCeeeeEeeehhhhhhhccccc-cccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC----cceec
Q 024407 193 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD----YFNIK 267 (268)
Q Consensus 193 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~----~~~~~ 267 (268)
.+..... .++.+.+..+.+ .... -.-.+.|++..+|....|-|+-.|.+-|..++.. .|++|
T Consensus 173 ta~r~i~--vynL~n~~te~k-----------~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 173 TAERHIA--VYNLENPPTEFK-----------RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred ecCCcEE--EEEcCCCcchhh-----------hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 4443332 222222211111 0111 1124788999998888899999999999888863 56554
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.79 E-value=1.6e-16 Score=130.08 Aligned_cols=231 Identities=17% Similarity=0.249 Sum_probs=156.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe---cC--CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN---FD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
|+|-...|...-.-+.+.+|++..+....... .. .-+.+++|.+++.++..-+++.+.+++. .
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~------------~ 275 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSK------------G 275 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeC------------C
Confidence 77855554444455899999999887765432 22 2367888888888777666654444333 1
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-----------eec---c---------------
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL-----------KES---D--------------- 127 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~---~--------------- 127 (268)
+........+|.+.|.+++.-.+|..| +|+.|..|..||-.-.+.. +.+ .
T Consensus 276 ~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G 354 (626)
T KOG2106|consen 276 TNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG 354 (626)
T ss_pred CceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence 112222334899999999998887755 5999999999983211100 000 0
Q ss_pred --------cccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCce
Q 024407 128 --------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASA 199 (268)
Q Consensus 128 --------~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (268)
...+|....+.++.+|+.+.+++++.|+.+++|+ ..+.+-+...+.++.++.++|.+ .++++. ..+..
T Consensus 355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt-~~G~w 430 (626)
T KOG2106|consen 355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGT-ATGRW 430 (626)
T ss_pred eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEee-ccceE
Confidence 0136888899999999999999999999999999 44555555667889999999987 444433 22222
Q ss_pred EEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 200 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 200 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
+ ..|..+. .+.++....+++++++|+|+|.+||.|+.|+.|.||+++.+-
T Consensus 431 ~-V~d~e~~-------------~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 431 F-VLDTETQ-------------DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred E-EEecccc-------------eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 2 1121111 111111124689999999999999999999999999998763
No 129
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=2e-18 Score=137.93 Aligned_cols=168 Identities=20% Similarity=0.228 Sum_probs=132.2
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
+..+.+..|+.+|.-+.|+++|++|++++.|.+..+|++.....+.-.....+|..+|..+.||||..+|++|+.|..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 44566889999999999999999999999999999999876555443444568999999999999999999999999999
Q ss_pred EEECCCcceeeeeecC--CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 159 LWDARTLELIKTYVTE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
+||..+++....+... -.+.+++|.|++..+++++ .+ ..+..||..... ..-|.. . ....|.++
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs-~d-r~i~~wdlDgn~--~~~W~g--------v--r~~~v~dl 360 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS-PD-RTIIMWDLDGNI--LGNWEG--------V--RDPKVHDL 360 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecC-CC-CcEEEecCCcch--hhcccc--------c--ccceeEEE
Confidence 9999999988877654 5788999999987765544 44 345556543211 111211 1 11358999
Q ss_pred EECCCCCeEEeeeCCCeEEEEeeC
Q 024407 237 AFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+.++||+++++...|..|+++..+
T Consensus 361 ait~Dgk~vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDKKIRLYNRE 384 (519)
T ss_pred EEcCCCcEEEEEecccceeeechh
Confidence 999999999999999999998654
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=3.8e-19 Score=150.74 Aligned_cols=164 Identities=29% Similarity=0.488 Sum_probs=136.3
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
++..+.+|.++|.++.|+++...|++|+.+|+|++||++.++.++.+ .||...+..|.|+|-+.+.++++.|.-+++
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL---tgh~~~~~sv~f~P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL---TGHLLNITSVDFHPYGEFFASGSTDTDLKI 138 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh---hccccCcceeeeccceEEecccccccccee
Confidence 34458899999999999999999999999999999999998877754 489999999999999999999999999999
Q ss_pred EECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 160 WDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 160 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
||.|..-|...+. +...+..+.++|.|..+..++ ++ ..+..||...|.+ ..++++|...+.++.|
T Consensus 139 wD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed-~tvki~d~~agk~------------~~ef~~~e~~v~sle~ 204 (825)
T KOG0267|consen 139 WDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-ED-NTVKIWDLTAGKL------------SKEFKSHEGKVQSLEF 204 (825)
T ss_pred hhhhccCceeeecCCcceeEEEeecCCCceeeccC-Cc-ceeeeeccccccc------------cccccccccccccccc
Confidence 9999777777665 344577788999876655443 32 3456666655544 3445789999999999
Q ss_pred CCCCCeEEeeeCCCeEEEEeeC
Q 024407 239 NPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 239 sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+|..-.+++||.|+++++|.++
T Consensus 205 hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 205 HPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred CchhhhhccCCCCceeeeeccc
Confidence 9999999999999999999887
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.78 E-value=2.9e-16 Score=128.64 Aligned_cols=240 Identities=18% Similarity=0.206 Sum_probs=167.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC----
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ---- 76 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (268)
|.+++. ++||..+|.|.+|+..+.+..+.. .|++.+.+++...++.++....+..+..|....-...+.+.+.+
T Consensus 254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 254 FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCe
Confidence 777875 889999999999998776554443 47788999988776666553333322333311100000000000
Q ss_pred ------------------------CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCc
Q 024407 77 ------------------------GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH 132 (268)
Q Consensus 77 ------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 132 (268)
...-.....+|..+...++.+|+.++++++++|+.+++|+ ..+...... -
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~----~ 406 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI----I 406 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE----e
Confidence 0111223467888889999999999999999999999999 334443322 2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeee
Q 024407 133 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 212 (268)
Q Consensus 133 ~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 212 (268)
..++.+++|+|.| .++.++..|...+.|..+...+.......++.++.++|++..+++++-+...++...+.....+..
T Consensus 407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 4678899999999 999999999999999998776665555778999999999988888776665555554433222221
Q ss_pred EeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+...+ .+|++++||+|+++|.+-+-|-.|..| ..++
T Consensus 486 ----------~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW-~~~~ 522 (626)
T KOG2106|consen 486 ----------VGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYW-KPSE 522 (626)
T ss_pred ----------eeeecC--ceeEEeeecCCCceEEeccCceEEEEE-cccc
Confidence 111223 789999999999999999999999999 5544
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-16 Score=135.07 Aligned_cols=232 Identities=17% Similarity=0.244 Sum_probs=162.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEec-CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+ ++..|+|.+.+|+|.-||+.++++.+.++. ...+=+++.+|.+..++++++.. .+....+ ...+.
T Consensus 77 W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddG-----vl~~~s~------~p~~I 144 (691)
T KOG2048|consen 77 WA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDG-----VLYDFSI------GPDKI 144 (691)
T ss_pred Ec-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCc-----eEEEEec------CCceE
Confidence 55 567899999999999999999999988875 56677888888777777665432 1111111 11111
Q ss_pred EE--EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee----ecccc-cCcccceEEEEEcCCCCEEEEeeC
Q 024407 81 VL--ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK----ESDKE-TGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 81 ~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~-~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
.. .|.-.+++|.+++|+|++..+++|+.||.|++||..++...+ ++... .+-+.-|++|.+-.++ .++++..
T Consensus 145 ~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS 223 (691)
T KOG2048|consen 145 TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS 223 (691)
T ss_pred EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecC
Confidence 11 122335889999999999999999999999999999987665 12211 2245578999888554 7899999
Q ss_pred CCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 154 DKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
-|+|++||...+..++.+. +...+.+++..++++++++++-++...-.........+.. . ..-..|...
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~-----~-----~~r~~h~hd 293 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI-----N-----SRRDLHAHD 293 (691)
T ss_pred CceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee-----e-----ccccCCccc
Confidence 9999999999988877654 4567899999998888777665443222111111111111 1 112356778
Q ss_pred eEEEEECCCCCeEEeeeCCCeEEEEe
Q 024407 233 INALAFNPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs~Dg~i~i~~ 258 (268)
|.+++..++ .+++|+.|.++.+--
T Consensus 294 vrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 294 VRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred ceeeeeecc--eEEecceeeEEEEcc
Confidence 999998887 899999999987743
No 133
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=7.5e-18 Score=129.20 Aligned_cols=162 Identities=19% Similarity=0.279 Sum_probs=126.3
Q ss_pred cCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---eeecccccCcccceEEEEEcCCCC-EEEEeeCCCcEEEE
Q 024407 86 GPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLW 160 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~iw 160 (268)
.+..++++..|+.-. +++.++|-|.+-.|||++++.. -.++. +|.++|..++|...+. ++++++.||.+|+|
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI---AHDKEV~DIaf~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI---AHDKEVYDIAFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE---ecCcceeEEEeccCccceEEEecCCCcEEEE
Confidence 345688999998744 7889999999999999999733 23333 6999999999998654 68999999999999
Q ss_pred ECCCcceeeeeec----CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 161 DARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 161 d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
|+|..+.-.-++. ..+...++|++.+..+++....++..+...|.|... ..+..+++|.+.|+.+
T Consensus 225 DLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-----------tpva~L~~H~a~VNgI 293 (364)
T KOG0290|consen 225 DLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-----------TPVARLRNHQASVNGI 293 (364)
T ss_pred EecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-----------cceehhhcCcccccce
Confidence 9998654222232 346788899988888777777777777776766432 2244578999999999
Q ss_pred EECCCC-CeEEeeeCCCeEEEEeeCC
Q 024407 237 AFNPDG-KSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 237 ~~sp~~-~~lasgs~Dg~i~i~~~~~ 261 (268)
+|.|.. ..|.|+|.|..+.||+++.
T Consensus 294 aWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 294 AWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred EecCCCCceeeecCCcceEEEEeccc
Confidence 999976 5699999999999999875
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=7.9e-17 Score=124.95 Aligned_cols=232 Identities=17% Similarity=0.237 Sum_probs=159.7
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
.||+||++|+|+|.|..|++||+-+|..+..++.+.|+-...|+|...-..+++ .+.....+.... . +
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~----~~~~sp~vi~~s------~--~ 139 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVAT----IMEESPVVIDFS------D--P 139 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEE----EecCCcEEEEec------C--C
Confidence 489999999999999999999999999999999999999999999653222221 011111111110 0 1
Q ss_pred EEE-Ee-cCCCC----eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 81 VLI-LK-GPQGR----INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 81 ~~~-~~-~~~~~----v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
.+. |+ ...+. -.+..|++-|+++++|...|.+.++|.++-+++..+.... ...|..+.++..|..|+.-+.|
T Consensus 140 ~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 140 KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCC
Confidence 111 11 00111 1123588999999999999999999999988877665321 3578889999999999999999
Q ss_pred CcEEEEECCC-------ccee--eee---ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhh
Q 024407 155 KSAKLWDART-------LELI--KTY---VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 222 (268)
Q Consensus 155 ~~i~iwd~~~-------~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 222 (268)
..||.|+++. +++. +++ ....+-..++|+.++.++++++ ....++..|....|..... +
T Consensus 218 RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s-~~aHaLYIWE~~~GsLVKI-L------- 288 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS-ARAHALYIWEKSIGSLVKI-L------- 288 (405)
T ss_pred ceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc-ccceeEEEEecCCcceeee-e-------
Confidence 9999999862 1221 111 1122446677888776666544 6677788888777765432 2
Q ss_pred hccccccc-cceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 223 IGGVKGHF-GPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 223 ~~~~~~h~-~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.|.. .....+.|+|-...+++- ..|.++||...
T Consensus 289 ----hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 289 ----HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ----cCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 2222 245678899988888887 67899999754
No 135
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.1e-15 Score=118.48 Aligned_cols=229 Identities=18% Similarity=0.214 Sum_probs=163.5
Q ss_pred CCCCCCEEEEeec--CCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSA--DQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~--D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|.+..+.++-+|. |.+||+-++.+.+.++.|. |...|..+..+|.+...+.++ ++..++.|++...
T Consensus 64 Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S-----~D~tvrLWDlR~~------ 132 (311)
T KOG1446|consen 64 FTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSS-----LDKTVRLWDLRVK------ 132 (311)
T ss_pred EecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecc-----cCCeEEeeEecCC------
Confidence 4455566666776 9999999999999999987 677899999999877666543 4667777877532
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
++...+. ...-..++|+|+|-.+|++...+.|++||++.- .+...+....+-..+.+.+.||+||++++.++..+.
T Consensus 133 ~cqg~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~ 210 (311)
T KOG1446|consen 133 KCQGLLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF 210 (311)
T ss_pred CCceEEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc
Confidence 2222222 122234689999999999988889999999862 222333322345678999999999999999999999
Q ss_pred EEEEECCCcceeeeeecCCc----eeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccc-ccc
Q 024407 157 AKLWDARTLELIKTYVTERP----VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFG 231 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~ 231 (268)
+.+.|.=+|....++..... .....+.|++..++.+.++ +.+..|+..++....++ .+ +..
T Consensus 211 ~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d--g~i~vw~~~tg~~v~~~------------~~~~~~ 276 (311)
T KOG1446|consen 211 IYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD--GTIHVWNLETGKKVAVL------------RGPNGG 276 (311)
T ss_pred EEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC--CcEEEEEcCCCcEeeEe------------cCCCCC
Confidence 99999988887777653322 2467889987666654433 34667777766654432 23 567
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
++.|+.|+|....+||++ ..+.+|=.
T Consensus 277 ~~~~~~fnP~~~mf~sa~--s~l~fw~p 302 (311)
T KOG1446|consen 277 PVSCVRFNPRYAMFVSAS--SNLVFWLP 302 (311)
T ss_pred CccccccCCceeeeeecC--ceEEEEec
Confidence 899999999877787655 56777733
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4e-16 Score=135.76 Aligned_cols=221 Identities=18% Similarity=0.225 Sum_probs=158.2
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEE-EEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLF-TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
.++..|++|+.+++|.+|....+..-. -.+..-+++.+++.-++..++++++.+ .+.+... .......
T Consensus 64 ~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~-----~vK~~~~------~D~s~~~ 132 (933)
T KOG1274|consen 64 CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDT-----AVKLLNL------DDSSQEK 132 (933)
T ss_pred ecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCce-----eEEEEec------cccchhe
Confidence 467789999999999999998776542 234567888999988777777766533 1222111 2234567
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccc----cC-cccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 83 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE----TG-HKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~-h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.+++|..+|.++.|+|.++.|++.+.||.|++||+.++.....+... .. -...+..++|+|++..++..+.|++|
T Consensus 133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~V 212 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTV 212 (933)
T ss_pred eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeE
Confidence 78999999999999999999999999999999999987665433211 11 14567888999999999999999999
Q ss_pred EEEECCCcceeeeeec---CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 158 KLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
++|+..+.+....+.. ......++|+|.|.++++++-.+...+|.++ + . +. ......|+
T Consensus 213 kvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~--t-~-~~--------------~~~~~~Vc 274 (933)
T KOG1274|consen 213 KVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD--T-H-ER--------------HEFKRAVC 274 (933)
T ss_pred EEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc--c-c-hh--------------ccccceeE
Confidence 9999998877666532 2347889999999888877655544444333 2 0 00 00124699
Q ss_pred EEEECCCCCeEEeeeCCCe
Q 024407 235 ALAFNPDGKSFSSGGEDGY 253 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~ 253 (268)
|++|.|+.+.+-.-..-|+
T Consensus 275 ~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 275 CEAWKPNANAITLITALGT 293 (933)
T ss_pred EEecCCCCCeeEEEeeccc
Confidence 9999998876543333333
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8.9e-16 Score=129.63 Aligned_cols=237 Identities=19% Similarity=0.233 Sum_probs=168.3
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEE-E--ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFT-F--NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
.||.+++.||.+=.||.|-+|++...=.... + ..+..+..++|++++.+...+.+ +.+..|++ .+
T Consensus 32 A~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s------g~i~EwDl------~~ 99 (691)
T KOG2048|consen 32 AYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS------GSITEWDL------HT 99 (691)
T ss_pred EEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCC------ceEEEEec------cc
Confidence 3788999999999999999999987533222 2 23566899999988877655433 34444444 34
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.++...+....+.|.+++.+|.+..++.|+.||.+..++...++...... ....+++|.+++|.+++..+++|+.||.|
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-LMRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-cccccceEEEEEecCCccEEEecccCceE
Confidence 45666677778899999999999999999999988888887776544322 23456899999999999999999999999
Q ss_pred EEEECCCcceeeeee-----cCCceeEEEEccC-CCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 158 KLWDARTLELIKTYV-----TERPVNAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
++||..++..+.-.. ....-..+.|+-. ...-.+.+|+..+.+..||...+. .+.....|..
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT------------LiqS~~~h~a 246 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT------------LIQSHSCHDA 246 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc------------hhhhhhhhhc
Confidence 999999887655211 1111223333210 011123345666667777655432 2333456778
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.|.|++.++++.++.+++.|+.|--++..++
T Consensus 247 dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 247 DVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred ceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 8999999999999999999999876666554
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.8e-17 Score=124.26 Aligned_cols=166 Identities=23% Similarity=0.326 Sum_probs=122.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC--CCCEEEEeeCCCcEEEEECC
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~iwd~~ 163 (268)
.|..-|.++...--|++|+|++.|++|||+..+.+.....+..+.+|+.||+.++|.. -|++|++++.||.|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 5777777777777789999999999999999998654333444569999999999985 79999999999999999987
Q ss_pred Ccceeeee---ecCCceeEEEEccCCCeE-EEeecCCCceEEEeccCC-CeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 164 TLELIKTY---VTERPVNAVTMSPLLDHV-VLGGGQDASAVTTTDHRA-GKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 164 ~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
+++-.+.. .+...+++++|.|.+-.+ ++++..|+. +...+.+. +.. +.. ...+.|+-.|+++.|
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~-vsvl~~~~~g~w-----~t~-----ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK-VSVLTYDSSGGW-----TTS-----KIVFAHEIGVNSVSW 157 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCc-EEEEEEcCCCCc-----cch-----hhhhccccccceeee
Confidence 77443332 245689999999975543 444444443 22222111 111 111 123578889999999
Q ss_pred CCC---C-----------CeEEeeeCCCeEEEEeeCCC
Q 024407 239 NPD---G-----------KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 239 sp~---~-----------~~lasgs~Dg~i~i~~~~~~ 262 (268)
.|- | +-||||+.|..|+||.++++
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 986 4 45999999999999999985
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.74 E-value=7.6e-16 Score=130.39 Aligned_cols=241 Identities=16% Similarity=0.281 Sum_probs=156.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE--ecCC------CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF--NFDS------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
|+|++..|+|+|+|+++.+|...+.+-++.. +..+ .-....|.+....++..+ ..+..+.|.. .+.
T Consensus 275 W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g-----~~Gg~hlWkt-~d~ 348 (764)
T KOG1063|consen 275 WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG-----RTGGFHLWKT-KDK 348 (764)
T ss_pred EccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec-----ccCcEEEEec-cCc
Confidence 7899989999999999999998776544432 2111 123444566554444332 1233444441 011
Q ss_pred CCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeecccccCcccceEEEEEcCCCCEEEEee
Q 024407 74 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGS 152 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~ 152 (268)
... .+...+.||.+.|++++|+|.|++|+++|.|.+=|++-.-.. +..+.+.+-.-|....+++++-+....+++++
T Consensus 349 ~~w--~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA 426 (764)
T KOG1063|consen 349 TFW--TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA 426 (764)
T ss_pred cce--eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence 111 123346899999999999999999999999999999854311 11233333345888899999888777899999
Q ss_pred CCCcEEEEECCCc--------------------------------ce---------------ee----------------
Q 024407 153 LDKSAKLWDARTL--------------------------------EL---------------IK---------------- 169 (268)
Q Consensus 153 ~d~~i~iwd~~~~--------------------------------~~---------------~~---------------- 169 (268)
.+.-+|+|++-.. +. .+
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 9999999984210 00 00
Q ss_pred --------------eeecCCceeEEEEccCCCeEEEeecCCC---ceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 170 --------------TYVTERPVNAVTMSPLLDHVVLGGGQDA---SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 170 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
.+.+...+.+++.+|.+..++.++.... ..|. +|+...-.+.+.+++|+-.
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~------------lw~t~~W~~~~~L~~HsLT 574 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIR------------LWNTANWLQVQELEGHSLT 574 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEE------------EEeccchhhhheecccceE
Confidence 0012234566777776655554432221 2233 3332222233467899999
Q ss_pred eEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 233 INALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|+.++|||||+||++.|.|.++.+|....+
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 999999999999999999999999987644
No 140
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=2.5e-16 Score=127.51 Aligned_cols=227 Identities=21% Similarity=0.287 Sum_probs=151.2
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|-|+|+++||||+.|..|.+||.++.+.+..+. |..+|.+++|..+..-+..++ .+..+.+|.+.. ..
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s-----~Drsvkvw~~~~------~s 277 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS-----ADRSVKVWSIDQ------LS 277 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeee-----cCCceEEEehhH------hH
Confidence 358999999999999999999999999988865 678899999988765444433 233555555432 23
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
.+..+-||++.|..+.-..-.+.+-+|+.|.++++|++...... .+ .+|...+-+++|- +..++++++.||.|.+
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-if---rg~~~sidcv~~I-n~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IF---RGGEGSIDCVAFI-NDEHFVSGSDNGSIAL 352 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-ee---eCCCCCeeeEEEe-cccceeeccCCceEEE
Confidence 34456799999998887766666656669999999999543221 11 2567778888876 4578999999999999
Q ss_pred EECCCcceeeeeecCC-------------ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccc
Q 024407 160 WDARTLELIKTYVTER-------------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV 226 (268)
Q Consensus 160 wd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 226 (268)
|++...+++.+....+ -+++++..|..+ ++++ |...+.+..|-...+.-....+ ..+
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~as-GS~~G~vrLW~i~~g~r~i~~l--------~~l 422 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLAS-GSWSGCVRLWKIEDGLRAINLL--------YSL 422 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCc-eEEe-cCCCCceEEEEecCCcccccee--------eec
Confidence 9998877766543211 245566666433 3333 3333445555444332111111 111
Q ss_pred cccccceEEEEECCCCCe-EEeeeCCCeE
Q 024407 227 KGHFGPINALAFNPDGKS-FSSGGEDGYV 254 (268)
Q Consensus 227 ~~h~~~v~~~~~sp~~~~-lasgs~Dg~i 254 (268)
. -.+.|++++|+++|+. +|..+....+
T Consensus 423 s-~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 423 S-LVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred c-cccEEEEEEEccCCCEEEEeccccccc
Confidence 1 3468999999999985 4444544433
No 141
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.2e-15 Score=113.21 Aligned_cols=231 Identities=19% Similarity=0.294 Sum_probs=147.5
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCC---------C-cEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeee
Q 024407 1 MFQANSMTLITGSADQTAKLWNVET---------G-AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI 69 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~---------~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (268)
.+||-+++|+.|+.+|+|.+..++. + ..+...+ |+.|+..+.++ +.+++.+.++. +..|..
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~------V~gw~W 88 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGL------VYGWEW 88 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCce------EEEeee
Confidence 3789999999999999999999853 2 2233333 78889999888 33444444432 222211
Q ss_pred eeCCCCCCCceEEEEe--c-----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc
Q 024407 70 ARDPADQGGESVLILK--G-----PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 142 (268)
Q Consensus 70 ~~~~~~~~~~~~~~~~--~-----~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s 142 (268)
....+....+++..++ - .-.+|+++...|..+-++.++.|+.++-||+++|+..+.+. +|+..+.++.--
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R 165 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR---GHTDYVHSVVGR 165 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc---CCcceeeeeeec
Confidence 1111111122222211 1 13468899999999888889999999999999999877765 899999999875
Q ss_pred CCCCEEEEeeCCCcEEEEECCCcceeeeeecCCc-----------eeEEEEccCCCeEEEeecCCCceEEEeccCCCeee
Q 024407 143 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP-----------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 211 (268)
Q Consensus 143 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 211 (268)
.....+++++.||++|+||.+++++++.+..... +.+++-+ .+.+++++| .. +..|..+.....
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~--lslwhLrsse~t 240 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PK--LSLWHLRSSEST 240 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-Cc--eeEEeccCCCce
Confidence 5666899999999999999999999887753221 2333333 234444333 32 333333322211
Q ss_pred eEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 212 AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.. + .-+.+|..+.|-.| .++++++...++-|++.++
T Consensus 241 ~v-f------------pipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 241 CV-F------------PIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred EE-E------------ecccceeEeeeecc--eEEEeccccceeeeeeccE
Confidence 11 1 12345777777543 5666777777777777654
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=1.6e-15 Score=118.13 Aligned_cols=236 Identities=15% Similarity=0.261 Sum_probs=149.8
Q ss_pred CCCCCCEEEEeecCCcEEEeecCC-----C-------cEEEEEecC--CCceeeeeec-------CCeEEEEEcCCCccc
Q 024407 2 FQANSMTLITGSADQTAKLWNVET-----G-------AQLFTFNFD--SPARSVDFAV-------GDKLAVITTDPFMEL 60 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~-----~-------~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~ 60 (268)
|||||..|++-+.|..+++|++.. + +....+++. ..+....|.+ ...+.++++ .
T Consensus 57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss-----r 131 (406)
T KOG2919|consen 57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS-----R 131 (406)
T ss_pred eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc-----c
Confidence 899999999999999999999731 1 111122222 2233333321 111222111 1
Q ss_pred ccceEeeeeeeCCCCCCCceEEEEe--cCCCCe---EEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeeecc----ccc
Q 024407 61 NSAIHVKRIARDPADQGGESVLILK--GPQGRI---NRAVWGPLNRTIISAGEDAIVRIWDT-ETGKLLKESD----KET 130 (268)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v---~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~----~~~ 130 (268)
..-+++|+.. +++....++ .|..++ .++.|+|||.+|++ |....||++|+ +.|+...... ...
T Consensus 132 ~~PIh~wdaf------tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 132 DQPIHLWDAF------TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred cCceeeeecc------ccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccc
Confidence 2233444332 233333333 355554 47899999999985 56788999999 5554332211 112
Q ss_pred CcccceEEEEEcCCCC-EEEEeeCCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCC
Q 024407 131 GHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG 208 (268)
Q Consensus 131 ~h~~~v~~v~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 208 (268)
+..+.+.+++|+|... .++.++...++-||.-...+.+..+. ++..+.-+.|.+++..++.++-. .-.|-.||.|..
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk-~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK-DDKILCWDIRYS 283 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC-CCeEEEEeehhc
Confidence 4467788999998554 88999999999888877766666553 55678899999998876665443 345677887754
Q ss_pred eeeeEeeehhhhhhhcccccccc---ceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 209 KFEAKFFDKILQEEIGGVKGHFG---PINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
... +..+.+|.+ .-.-....|++++||+|+.||.|++|+++.
T Consensus 284 ~~p-----------v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 284 RDP-----------VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred cch-----------hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 432 223444543 122345569999999999999999999985
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=1e-15 Score=123.47 Aligned_cols=186 Identities=20% Similarity=0.316 Sum_probs=130.9
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEec
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 86 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (268)
+.|||||.|+||++||+.++++..++. .
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~----------------------------------------------------~ 284 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSIT----------------------------------------------------H 284 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehh----------------------------------------------------h
Confidence 569999999999999999988765443 3
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EEEEeeCCCcEEEEECCC
Q 024407 87 PQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDART 164 (268)
Q Consensus 87 ~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~iwd~~~ 164 (268)
|.++|.++.|+|.. ..|++|+.|++|++.|.|......... .-.+.|-.++|.+.+. .+++++.||+|+-+|+|+
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w---k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW---KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE---EeccceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence 55667777777754 578999999999999998522111111 1356788999998765 466778999999999998
Q ss_pred c-ceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccc---ccceEEEEEC
Q 024407 165 L-ELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH---FGPINALAFN 239 (268)
Q Consensus 165 ~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~s 239 (268)
. +++.++. |..++.++++++.-..+++.++.+ ..+..|+...- .+.. ...| -+...|.++.
T Consensus 362 ~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d-~~Vklw~~~~~----------~~~~---v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 362 PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD-KVVKLWKFDVD----------SPKS---VKEHSFKLGRLHCFALD 427 (463)
T ss_pred CCCceeEEEeccCCcceEEecCCCCcceeecccc-ceEEEEeecCC----------CCcc---cccccccccceeecccC
Confidence 5 6666553 677899999998877777765554 34555532210 0100 0111 1336778888
Q ss_pred CCCCe-EEeeeCCCeEEEEeeCC
Q 024407 240 PDGKS-FSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 240 p~~~~-lasgs~Dg~i~i~~~~~ 261 (268)
|+-.+ +|.|+..+.++||++-.
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred CCcceEEEecCccceEEEeeccc
Confidence 87754 88899889999997653
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.9e-15 Score=121.55 Aligned_cols=205 Identities=20% Similarity=0.283 Sum_probs=158.0
Q ss_pred cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcE
Q 024407 34 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIV 112 (268)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i 112 (268)
....|.++.|||..++++++. +++.+++..+.... ...++.+.--.-+|-++.|.|+|. .++++|.....
T Consensus 212 s~~~I~sv~FHp~~plllvaG-----~d~~lrifqvDGk~----N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAG-----LDGTLRIFQVDGKV----NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred CcCCceEEEecCCCceEEEec-----CCCcEEEEEecCcc----ChhheeeeeccCccceeeecCCCceEEEecccceEE
Confidence 356799999999998888765 34555555554321 223444444567899999999998 88999999999
Q ss_pred EEEECCCCceeeecccccCcc-cceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEE
Q 024407 113 RIWDTETGKLLKESDKETGHK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVL 191 (268)
Q Consensus 113 ~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (268)
+.||+.+++..+ +....++. ..+....+++++++|+.++..|.|.+--..+++.+.++..+..+..+.|+.++..+++
T Consensus 283 ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 283 YSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA 361 (514)
T ss_pred EEeecccccccc-ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE
Confidence 999999987643 33333444 3466678899999999999999999999999999999999999999999998888888
Q ss_pred eecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 192 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 192 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+++++ .++.||.+......++.+. +- -.=++++.|+++.|||+||.-|.|.||..+.
T Consensus 362 ~~~~G--eV~v~nl~~~~~~~rf~D~----------G~-v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 362 SGGTG--EVYVWNLRQNSCLHRFVDD----------GS-VHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EcCCc--eEEEEecCCcceEEEEeec----------Cc-cceeeeeecCCCceEEeccCcceEEEeccch
Confidence 87765 6788888877665555442 11 1235688889999999999999999998654
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.72 E-value=5.5e-16 Score=125.51 Aligned_cols=236 Identities=18% Similarity=0.246 Sum_probs=146.2
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCCCcEEEEEec--C-CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVETGAQLFTFNF--D-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
|+| +-..++++|+|||||+=|+++...-..+.. + .....+++......++.+.. ++...+++....
T Consensus 242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~-----~G~f~~iD~R~~----- 311 (498)
T KOG4328|consen 242 FSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN-----VGNFNVIDLRTD----- 311 (498)
T ss_pred ecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec-----ccceEEEEeecC-----
Confidence 455 334599999999999999987643222222 1 12334455555554444321 223444444332
Q ss_pred CceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeee-cccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 78 GESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
+.....+.-|...|++++++|... +|+|+|.|++++|||++.-+.-.. +-....|+..|.++.|||.+-.|++.+.|.
T Consensus 312 ~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 312 GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC
Confidence 222334566888999999999875 678999999999999987433222 222346999999999999988899999999
Q ss_pred cEEEEEC----CCcceeeeeecCCc------eeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc
Q 024407 156 SAKLWDA----RTLELIKTYVTERP------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225 (268)
Q Consensus 156 ~i~iwd~----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 225 (268)
+|++||. ...+...++.|+.. .....|.|+...++++.-.. .|-..|...+.....+.+.
T Consensus 392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r--~IDv~~~~~~q~v~el~~P-------- 461 (498)
T KOG4328|consen 392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR--PIDVFDGNGGQMVCELHDP-------- 461 (498)
T ss_pred ceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCc--ceeEEcCCCCEEeeeccCc--------
Confidence 9999998 34445555554432 23456888655555443322 2333444433322222111
Q ss_pred ccccccceEE-EEECCCCC-eEEeeeCCCeEEEEeeC
Q 024407 226 VKGHFGPINA-LAFNPDGK-SFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 226 ~~~h~~~v~~-~~~sp~~~-~lasgs~Dg~i~i~~~~ 260 (268)
....|.+ ..|+|-+. ++|-|+.-|.|.||.-+
T Consensus 462 ---~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 462 ---ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ---cccccccceeecccccceeccCCccceEEEEecC
Confidence 1124555 48999887 45555567888888654
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3.5e-17 Score=145.19 Aligned_cols=167 Identities=18% Similarity=0.256 Sum_probs=123.6
Q ss_pred EEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEEE
Q 024407 83 ILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iw 160 (268)
....|++.|..++|++.+. .|++|+.||.|.|||+..-+...... ...-.+.|.+++|.. ...+|++++.+|++.||
T Consensus 111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW 189 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW 189 (1049)
T ss_pred hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence 3567999999999999876 99999999999999998744333221 122457899999885 45568899999999999
Q ss_pred ECCCcceeeeeecC---CceeEEEEccCCCeEEE-eecCCCc-eEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 161 DARTLELIKTYVTE---RPVNAVTMSPLLDHVVL-GGGQDAS-AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 161 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
|+|..+.+-.+... ..+..+.|+|++...++ +.+++.. .+..||.|.- ...++.+++|...|.+
T Consensus 190 Dlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-----------ssP~k~~~~H~~Gils 258 (1049)
T KOG0307|consen 190 DLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-----------SSPLKILEGHQRGILS 258 (1049)
T ss_pred cccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-----------CCchhhhcccccceee
Confidence 99988766555322 34778999998776444 4444433 4556665421 1123446789999999
Q ss_pred EEECCCC-CeEEeeeCCCeEEEEeeCC
Q 024407 236 LAFNPDG-KSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 236 ~~~sp~~-~~lasgs~Dg~i~i~~~~~ 261 (268)
+.|++.+ .+++|++.|+.|.+|+-+.
T Consensus 259 lsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 259 LSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred eccCCCCchhhhcccCCCCeeEecCCC
Confidence 9999966 8899999999999997654
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.71 E-value=3.7e-16 Score=123.77 Aligned_cols=143 Identities=19% Similarity=0.350 Sum_probs=102.8
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
||| ....|+|||.||+|||||+..+.... +
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~-------------------------------------------------~ 295 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKA-------------------------------------------------A 295 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccc-------------------------------------------------e
Confidence 566 44579999999999999986653211 1
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCc
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG---KLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKS 156 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~ 156 (268)
+. .++|.+.|+.+.|+..-..|++|+.||+++|||+++- +++..+ +-|..+|+++.|+| +...+++++.|.+
T Consensus 296 ~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f---k~Hk~pItsieW~p~e~s~iaasg~D~Q 371 (440)
T KOG0302|consen 296 VS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF---KYHKAPITSIEWHPHEDSVIAASGEDNQ 371 (440)
T ss_pred eE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE---EeccCCeeEEEeccccCceEEeccCCCc
Confidence 11 2678889999999988779999999999999999874 344444 35999999999997 4567889999999
Q ss_pred EEEEECCCcce--------ee---------eeec--CCceeEEEEccCCCeEEEeecCCC
Q 024407 157 AKLWDARTLEL--------IK---------TYVT--ERPVNAVTMSPLLDHVVLGGGQDA 197 (268)
Q Consensus 157 i~iwd~~~~~~--------~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 197 (268)
|.+||+....- .. .+.+ +..+..+.|++....++++.+-++
T Consensus 372 itiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 372 ITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 99999863211 00 1112 234556778877666666555444
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=2.5e-16 Score=122.72 Aligned_cols=148 Identities=20% Similarity=0.336 Sum_probs=107.7
Q ss_pred CCEEEEeecCCcEEEeecCCCc---EEEEEe---cCCCceeeeeec----CCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 6 SMTLITGSADQTAKLWNVETGA---QLFTFN---FDSPARSVDFAV----GDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~---~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
.+.++|+|.+ .+.+|.....- .+..+. +++....+.|.. ++.+++++. ..+.+++.+ .
T Consensus 55 ~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G-----~~GvIrVid------~ 122 (385)
T KOG1034|consen 55 PQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG-----YLGVIRVID------V 122 (385)
T ss_pred CceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec-----ceeEEEEEe------c
Confidence 3456776665 67788765432 222221 233445555553 233433332 112222222 2
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
..++....+.||...|+.+.++|+. ++++++|.|.+||+|++++..++..+....+|+..|.+++|++++.++++++.|
T Consensus 123 ~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD 202 (385)
T KOG1034|consen 123 VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD 202 (385)
T ss_pred chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc
Confidence 3456677789999999999999987 688999999999999999999999888888999999999999999999999999
Q ss_pred CcEEEEECCCc
Q 024407 155 KSAKLWDARTL 165 (268)
Q Consensus 155 ~~i~iwd~~~~ 165 (268)
.+|++|++...
T Consensus 203 hslk~W~l~~~ 213 (385)
T KOG1034|consen 203 HSLKLWRLNVK 213 (385)
T ss_pred ceEEEEecChh
Confidence 99999999853
No 149
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.4e-16 Score=124.97 Aligned_cols=179 Identities=22% Similarity=0.369 Sum_probs=139.8
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeC---CCCCCC
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD---PADQGG 78 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 78 (268)
+|+|.+|+.|.-.+.+.+|.+.+|.++..+. |-.++.++.|+.++..++.++ .++.+.+|.+... ......
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs-----kDg~V~vW~l~~lv~a~~~~~~ 164 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS-----KDGAVLVWLLTDLVSADNDHSV 164 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC-----CCccEEEEEEEeecccccCCCc
Confidence 6788888888799999999999999988775 567899999998776655544 2445566655442 122256
Q ss_pred ceEEEEecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeec------------------------------
Q 024407 79 ESVLILKGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTETGKLLKES------------------------------ 126 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------ 126 (268)
++.+.+.+|+-+|+++...+.| .+++|+|.|.++|+||+-.+..+..+
T Consensus 165 ~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 165 KPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred cceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEee
Confidence 8899999999999999887754 58999999999999998543322110
Q ss_pred ------------------------ccccCccc--ceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee-cCCceeE
Q 024407 127 ------------------------DKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 179 (268)
Q Consensus 127 ------------------------~~~~~h~~--~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~ 179 (268)
....||.. +|+|++++.||..|++|+.||.+.+||..+.++++++. ...+++.
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtn 324 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTN 324 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccce
Confidence 01136766 99999999999999999999999999999999998877 4567888
Q ss_pred EEEccCC
Q 024407 180 VTMSPLL 186 (268)
Q Consensus 180 ~~~~~~~ 186 (268)
+.+.|.-
T Consensus 325 L~i~~~~ 331 (476)
T KOG0646|consen 325 LQINPLE 331 (476)
T ss_pred eEeeccc
Confidence 8886653
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.70 E-value=8.5e-16 Score=125.76 Aligned_cols=210 Identities=15% Similarity=0.255 Sum_probs=144.5
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
.+.++++|+..+.|||||++.....+.++ |...|.++.+...+ .++.++..+.+.+ ..... .....
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii------h~~~t------~~~tt 157 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII------HGTKT------KQKTT 157 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEE------Eeccc------Ccccc
Confidence 34789999999999999998554444443 45567777776544 3333332222221 11111 11122
Q ss_pred EEecCC-CCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EEEEeeCCCcEEE
Q 024407 83 ILKGPQ-GRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKL 159 (268)
Q Consensus 83 ~~~~~~-~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~i 159 (268)
.+...+ ..|.-+.|+|..+.+ .+++.+|.|.+||+.....+... ...|.++...++|+|..+ .|++.+.|..|.+
T Consensus 158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~--~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA--SEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch--hhhccCCcCcceecCCccceEEEecccceEEE
Confidence 233333 345688999998754 68899999999999876555433 347999999999998665 5679999999999
Q ss_pred EECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 160 WDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
||.+..+....+.-+.+...++|.++|.+++++ ...+.+..+|.|... ..+..+..|...|++++|-
T Consensus 236 yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG--~s~G~~i~YD~R~~k-----------~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 236 YDIRSQASTDRLTYSHPLSTVAFSECGTYLCAG--NSKGELIAYDMRSTK-----------APVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred eecccccccceeeecCCcceeeecCCceEEEee--cCCceEEEEecccCC-----------CCceEeeecccceeEEEee
Confidence 999988887888778899999999987655443 333455666655322 2344566788899999997
Q ss_pred CC
Q 024407 240 PD 241 (268)
Q Consensus 240 p~ 241 (268)
|.
T Consensus 303 ~s 304 (673)
T KOG4378|consen 303 PS 304 (673)
T ss_pred ec
Confidence 65
No 151
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=2.6e-15 Score=115.30 Aligned_cols=174 Identities=20% Similarity=0.307 Sum_probs=121.4
Q ss_pred CCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EEEEeeCCCcEEEEECC
Q 024407 87 PQGRINRAVWGP--LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 87 ~~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~iwd~~ 163 (268)
+....++..|+| +|..+++ ..|+++..||+++.+....+. .+|...|..++|.|+-. +|++|+.|+.|++||.|
T Consensus 169 ~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred ccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence 444566778888 5677765 478999999999877655554 47888999999998765 57899999999999999
Q ss_pred Ccc-eeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCC-eeeeEeee-------hhhh--------hhhcc
Q 024407 164 TLE-LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG-KFEAKFFD-------KILQ--------EEIGG 225 (268)
Q Consensus 164 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~-------~~~~--------~~~~~ 225 (268)
..+ .++.+. +..-+.++.++|.++.++++++.+..++-..-.... .-...+-+ .... -.+..
T Consensus 246 ~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t 325 (370)
T KOG1007|consen 246 KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET 325 (370)
T ss_pred CCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccc
Confidence 643 344432 445688999999999999988888764422111100 00000000 0001 12335
Q ss_pred ccccccceEEEEECCCCCe-EEeeeCCCeEEEEeeCCCc
Q 024407 226 VKGHFGPINALAFNPDGKS-FSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 226 ~~~h~~~v~~~~~sp~~~~-lasgs~Dg~i~i~~~~~~~ 263 (268)
+..|.+.|.+++||.-..+ |||=|-||.+-|-++...+
T Consensus 326 ydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~~ 364 (370)
T KOG1007|consen 326 YDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRFL 364 (370)
T ss_pred ccccccceEEEeeccCCCeeEEEeccCceEEeecCChhh
Confidence 6679999999999987666 8899999999988777553
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=1.8e-15 Score=120.90 Aligned_cols=157 Identities=22% Similarity=0.352 Sum_probs=116.1
Q ss_pred CCCCCC-EEEEeecCCcEEEeecCCCcE-----EEEE-----ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeee
Q 024407 2 FQANSM-TLITGSADQTAKLWNVETGAQ-----LFTF-----NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA 70 (268)
Q Consensus 2 fs~d~~-~l~s~s~D~tv~~wd~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (268)
|.+++. .|+||+.|..||+|-++.+.. ...+ +|+..+..+.|.|.+.+++.+.+.. .+..|...
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g-----~v~lWk~~ 95 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG-----EVFLWKQG 95 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc-----eEEEEEec
Confidence 555555 899999999999998854321 2222 3678899999999877766665532 22222221
Q ss_pred ------eCCCCCC----CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEE
Q 024407 71 ------RDPADQG----GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 140 (268)
Q Consensus 71 ------~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~ 140 (268)
.+.+... =.-...+.+|..+|++++|+|++..+++++-|+++++||+..|+....+. .|...|..++
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgva 172 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVA 172 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc---ccccccceee
Confidence 1111111 12234577999999999999999999999999999999999998877654 6999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEECCCcc
Q 024407 141 KAADGSHFLTGSLDKSAKLWDARTLE 166 (268)
Q Consensus 141 ~s~~~~~l~s~~~d~~i~iwd~~~~~ 166 (268)
+.|.+.++++-+.|...+.+.+...+
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeee
Confidence 99999999999999877777765433
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.69 E-value=1.1e-15 Score=129.48 Aligned_cols=219 Identities=19% Similarity=0.254 Sum_probs=147.9
Q ss_pred cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 024407 34 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 113 (268)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 113 (268)
|.-.+.+++.+|.+.+++.++.........+.+|.... =.....+.+|+-.|+.+.|+|||++|+++|.|.++.
T Consensus 524 HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~------W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN------WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc------hhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 44556777777777777776655555555666665432 133457899999999999999999999999999999
Q ss_pred EEECCCCce-eeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc--ceeee---eecCCceeEEEEccCCC
Q 024407 114 IWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKT---YVTERPVNAVTMSPLLD 187 (268)
Q Consensus 114 iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~---~~~~~~~~~~~~~~~~~ 187 (268)
+|....... -..+...+.|+-.|++.+|+|++.+++|+|.|.+|++|..... +.+.. +.....+.++++.|...
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~ 677 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH 677 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence 998744211 1123345679999999999999999999999999999998766 33333 23456788888776432
Q ss_pred ---eEEEeecCCCceEEEeccC-CCe-eeeEeeehhhhhhhccccccccceEEEEECCC--------C--CeEEeeeCCC
Q 024407 188 ---HVVLGGGQDASAVTTTDHR-AGK-FEAKFFDKILQEEIGGVKGHFGPINALAFNPD--------G--KSFSSGGEDG 252 (268)
Q Consensus 188 ---~~~~~~~~~~~~i~~~d~~-~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--------~--~~lasgs~Dg 252 (268)
.-+++.|...+.+..|... ..+ .....+.. ..+.....+|.+.|+.+.|+|- . ..|++|+.|-
T Consensus 678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~ 755 (764)
T KOG1063|consen 678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNL--DTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDE 755 (764)
T ss_pred ccccceEEEEecccEEEEEecccccccccceeeee--ccccccccChHHhhheeEeccccccccccccceeEEeeecccc
Confidence 2233445555555555421 100 01111111 1122233467788999999974 2 3479999999
Q ss_pred eEEEEeeC
Q 024407 253 YVRLHHFD 260 (268)
Q Consensus 253 ~i~i~~~~ 260 (268)
.+||++++
T Consensus 756 ~vri~nv~ 763 (764)
T KOG1063|consen 756 SVRIFNVD 763 (764)
T ss_pred eeEEeecc
Confidence 99999875
No 154
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.4e-14 Score=112.08 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=148.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|.+ ...++||+.||.||++|+.++.....-.|..+++++.+.+....+++++ ++..+.+|+..... ..
T Consensus 62 F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgs-----WD~~ik~wD~R~~~------~~ 129 (323)
T KOG1036|consen 62 FAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGS-----WDKTIKFWDPRNKV------VV 129 (323)
T ss_pred ccC-CceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcc-----cCccEEEEeccccc------cc
Confidence 444 4579999999999999999998777677899999999987655444432 45566666654211 01
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
..+ ...+.|.++.. .|..|+.|+.|..+.+||+++....-+. ...+-+.++.++++-|++.-++.++.||.|-+=.
T Consensus 130 ~~~-d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~-reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 130 GTF-DQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR-RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred ccc-ccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh-ccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence 111 12235666654 4678999999999999999986543322 2345567899999999999999999999987655
Q ss_pred CCCcc----------eeeee----ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccc
Q 024407 162 ARTLE----------LIKTY----VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 227 (268)
Q Consensus 162 ~~~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 227 (268)
+...+ |.... ..-.++++++|+|.+..++.+ |.+ +.+..||.... ..+.++.
T Consensus 206 ~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTg-GsD-G~V~~Wd~~~r------------Krl~q~~ 271 (323)
T KOG1036|consen 206 FDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATG-GSD-GIVNIWDLFNR------------KRLKQLA 271 (323)
T ss_pred cCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEec-CCC-ceEEEccCcch------------hhhhhcc
Confidence 54432 22111 122478999999986555444 444 35666665432 1223333
Q ss_pred ccccceEEEEECCCCCeEEeeeC
Q 024407 228 GHFGPINALAFNPDGKSFSSGGE 250 (268)
Q Consensus 228 ~h~~~v~~~~~sp~~~~lasgs~ 250 (268)
.....|.+++|+.+|..||.++.
T Consensus 272 ~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 272 KYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCCCceEEEEeccCCCeEEEEec
Confidence 44567999999999999998874
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.68 E-value=5.4e-15 Score=124.30 Aligned_cols=238 Identities=16% Similarity=0.184 Sum_probs=150.2
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEE------E-EEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQL------F-TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
...+|+.+..||.|.++|......- + -..|...+..+.|.|+...++.+++ +..++.|++..
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG-----DsT~r~Wdvk~------ 131 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG-----DSTIRPWDVKT------ 131 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC-----Cceeeeeeecc------
Confidence 4567999999999999997543211 1 2236677889999996655444332 33455555532
Q ss_pred CceEE--EEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce--------------------eee----ccccc
Q 024407 78 GESVL--ILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKL--------------------LKE----SDKET 130 (268)
Q Consensus 78 ~~~~~--~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~--------------------~~~----~~~~~ 130 (268)
+..+. .+.||++.|.+++|.|+. ..|++|+.||.|.|||++-... ... ...-.
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 22322 377999999999999987 4788999999999999874220 000 00001
Q ss_pred CcccceEE---EEEcCCCCEEEEeeC-CCcEEEEECCCcceeeeee---------c---CCceeEEEEccCCCeEEEeec
Q 024407 131 GHKKTITS---LAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYV---------T---ERPVNAVTMSPLLDHVVLGGG 194 (268)
Q Consensus 131 ~h~~~v~~---v~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~ 194 (268)
.+...+.+ +.+..|...|++++. |+.|++||+|...+..... + .....++.....|.++++.+.
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt 291 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT 291 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence 23223333 444567888998887 9999999999764433221 1 123455666777788888777
Q ss_pred CCCceEEEeccCCCeeeeEeeehhhhhhhccccccc--cceEEEEECCCCCeEEeeeCCCeEEEEeeCCCcce
Q 024407 195 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF--GPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 265 (268)
Q Consensus 195 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~~ 265 (268)
++. |..|+.+...... +....++. ..-..-..+||+++++||+.|....+|.+...+..
T Consensus 292 D~s--Iy~ynm~s~s~sP----------~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 292 DNS--IYFYNMRSLSISP----------VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred CCc--EEEEeccccCcCc----------hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 543 4444443222111 11122222 12233456899999999999999999998876543
No 156
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.8e-15 Score=116.43 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeee
Q 024407 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170 (268)
Q Consensus 91 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 170 (268)
-+++.|++.|.+|++|+.||.|.|||+.|.+..+.+ .+|--+|.+++||+||..|+|++.|..|++||+..+.+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l---saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML---SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh---hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 678999999999999999999999999997654444 47999999999999999999999999999999999999999
Q ss_pred eecCCceeEEEEccCCCeEEEee-cCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeee
Q 024407 171 YVTERPVNAVTMSPLLDHVVLGG-GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 249 (268)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs 249 (268)
+.-+.++..+.|+|-....+++. -...-.+...+..... ++........ ...-.+..|.+.|+|+.+|.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~----~Lp~d~d~dl------n~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS----VLPKDDDGDL------NSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee----eccCCCcccc------ccccccccccCCCCEEEEec
Confidence 88888999999999766544432 2222222222211111 1111000000 01112346889999999999
Q ss_pred CCCeEEEEeeCC
Q 024407 250 EDGYVRLHHFDP 261 (268)
Q Consensus 250 ~Dg~i~i~~~~~ 261 (268)
.-|.+.++....
T Consensus 173 sKGkllv~~a~t 184 (405)
T KOG1273|consen 173 SKGKLLVYDAET 184 (405)
T ss_pred CcceEEEEecch
Confidence 999999987653
No 157
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=3.8e-14 Score=110.10 Aligned_cols=221 Identities=21% Similarity=0.347 Sum_probs=146.9
Q ss_pred EEEEeecCCcEEEeecCCCc------------EEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 8 TLITGSADQTAKLWNVETGA------------QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 8 ~l~s~s~D~tv~~wd~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
.|+.|++...|--+++.... +++.+. |..++.++++. +..++..+ .+..+++.++..
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs-~~~~aSGs------sDetI~IYDm~k--- 72 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS-GPYVASGS------SDETIHIYDMRK--- 72 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec-ceeEeccC------CCCcEEEEeccc---
Confidence 47788888777666654221 112222 34555555543 11111111 244555655543
Q ss_pred CCCCceEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee
Q 024407 75 DQGGESVLILKGPQGRINRAVWGPLNR--TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS 152 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~ 152 (268)
.+++..+-.|++.|+++.|.|.-. .|++|+.||.|.||+...-..+..+ .+|..+|+.++++|.+..-++.+
T Consensus 73 ---~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl---K~H~~~Vt~lsiHPS~KLALsVg 146 (362)
T KOG0294|consen 73 ---RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL---KAHKGQVTDLSIHPSGKLALSVG 146 (362)
T ss_pred ---hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee---cccccccceeEecCCCceEEEEc
Confidence 345566778999999999998764 9999999999999999776555554 47999999999999999999999
Q ss_pred CCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 153 LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 153 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
.|+.+++||+-+++.-..+........+.|+|.++++++..... ..++-.|. +.++ ..+. .+..
T Consensus 147 ~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~------A~v~--------~~i~-~~~r 210 (362)
T KOG0294|consen 147 GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDN------ASVF--------REIE-NPKR 210 (362)
T ss_pred CCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE-EEEEeccc------HhHh--------hhhh-cccc
Confidence 99999999998887655544444556689999998777654321 11111110 1111 1111 1134
Q ss_pred eEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 233 INALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+.|+.|- ++.+|++|+.|+.|++|+-+.
T Consensus 211 ~l~~~~l-~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 211 ILCATFL-DGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred ceeeeec-CCceEEEecCCceEEEeccCC
Confidence 6677764 567789999999999998774
No 158
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=1.5e-15 Score=127.76 Aligned_cols=86 Identities=24% Similarity=0.380 Sum_probs=76.3
Q ss_pred CceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 78 GESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
..+...+.+|...|+++.|+|.- ..|+++++|-+|++||+++++....+ .+|+.+|..++|||+|..+++.+.||+
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l---~gHtdqIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL---VGHTDQIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee---ccCcCceeEEEECCCCcceeeeecCce
Confidence 34556678999999999999975 68899999999999999998766554 489999999999999999999999999
Q ss_pred EEEEECCCcc
Q 024407 157 AKLWDARTLE 166 (268)
Q Consensus 157 i~iwd~~~~~ 166 (268)
|++|.+|+++
T Consensus 744 ~rVy~Prs~e 753 (1012)
T KOG1445|consen 744 LRVYEPRSRE 753 (1012)
T ss_pred EEEeCCCCCC
Confidence 9999999865
No 159
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.9e-15 Score=120.21 Aligned_cols=195 Identities=19% Similarity=0.300 Sum_probs=131.4
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
.|++|+..|+|++.||++|+|+......
T Consensus 151 af~~~gs~latgg~dg~lRv~~~Ps~~t---------------------------------------------------- 178 (398)
T KOG0771|consen 151 AFNGDGSKLATGGTDGTLRVWEWPSMLT---------------------------------------------------- 178 (398)
T ss_pred EEcCCCCEeeeccccceEEEEecCcchh----------------------------------------------------
Confidence 3889999999999999999998432211
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC---CEEEE--eeCCC
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG---SHFLT--GSLDK 155 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~---~~l~s--~~~d~ 155 (268)
+..+..|.++|.++.|+|||+.|++.+.| ..+||+.+++-.+..... .+.+.....+.|+.|+ .+.+. ..--+
T Consensus 179 ~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~ 256 (398)
T KOG0771|consen 179 ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGG 256 (398)
T ss_pred hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-cccchhhhhceecccCCCceEEEEEecCCCC
Confidence 22245688999999999999999999999 999999999855543321 2334455666777666 33332 23344
Q ss_pred cEEEEECCCc------ceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccc
Q 024407 156 SAKLWDARTL------ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 229 (268)
Q Consensus 156 ~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h 229 (268)
.|+.||+... +..+.......+.+++.++++..+++++-++...+. +...-. ...+ ..+.|
T Consensus 257 ~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~--~~~~lq--~~~~---------vk~aH 323 (398)
T KOG0771|consen 257 GVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIY--DAKSLQ--RLQY---------VKEAH 323 (398)
T ss_pred ceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEE--Eeceee--eeEe---------ehhhh
Confidence 5666654321 111111223468889999998888887665443333 211111 1111 12468
Q ss_pred ccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 230 FGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 230 ~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
...|+.+.|+||.+++++.+.|..++|..+.-+
T Consensus 324 ~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 324 LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred eeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 889999999999999999999999888777654
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.66 E-value=7.6e-15 Score=118.98 Aligned_cols=223 Identities=17% Similarity=0.198 Sum_probs=154.5
Q ss_pred eecCCCcEEEEEe-cCCCceeeeeecCCe-EEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcC
Q 024407 21 WNVETGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 98 (268)
Q Consensus 21 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 98 (268)
.|+.+......++ +.+++.+++|||... -.+++.+ ..+.+.+|.+....+... .+..+..|..+|.++.|+|
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~Gd----K~G~VG~Wn~~~~~~d~d--~v~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGD----KGGQVGLWNFGTQEKDKD--GVYLFTPHSGPVSGLKFSP 244 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEcc----CCCcEEEEecCCCCCccC--ceEEeccCCccccceEecC
Confidence 3444444444444 478899999999654 3344333 345677777753222222 2445678999999999999
Q ss_pred CC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce-eeee-ecCC
Q 024407 99 LN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTY-VTER 175 (268)
Q Consensus 99 ~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-~~~~ 175 (268)
.. .++++.|+||+||.-|++.+..-..+.. ..-......+.|+.+...++.+..=|...+||+|+... ...+ .+..
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred CChhheeeeccCceeeeeeecchhhHHHhhc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence 76 6899999999999999987643221211 11245667778888877777777777999999997643 2222 3456
Q ss_pred ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEE
Q 024407 176 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 255 (268)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~ 255 (268)
.++.++++|...+++++++.+..+ ..||.|...-... .+-....|+..|+++.|||.+.-|+|.++|..||
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~-kIWD~R~l~~K~s--------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTA-KIWDLRQLRGKAS--------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred ccceeecCCCCchheeecccCcce-eeeehhhhcCCCC--------cceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence 899999999999999888877653 4566553222111 0112346888999999999988899999999999
Q ss_pred EEee
Q 024407 256 LHHF 259 (268)
Q Consensus 256 i~~~ 259 (268)
||..
T Consensus 395 v~ds 398 (498)
T KOG4328|consen 395 VFDS 398 (498)
T ss_pred Eeec
Confidence 9986
No 161
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=114.60 Aligned_cols=157 Identities=21% Similarity=0.278 Sum_probs=110.7
Q ss_pred CCCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCCceeeec-------ccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 88 QGRINRAVWGP-LNR--TIISAGEDAIVRIWDTETGKLLKES-------DKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 88 ~~~v~~~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.+.+.+..+.- ++. .+++|.++|.+.+||+.++..+.++ ....+|..+|+++.+.+..+.-++++.+..+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 34566666433 233 4578889999999999987433322 2235799999999999877788899999999
Q ss_pred EEEECCCc--ce----eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 158 KLWDARTL--EL----IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 158 ~iwd~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
.+|.++-. .+ ..++. +..+..+...|+++.++.+ -||+|+..|..+. ...+..++-|++
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lk-npGv~gvrIRpD~KIlATA---------GWD~RiRVyswrt-----l~pLAVLkyHsa 294 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLK-NPGVSGVRIRPDGKILATA---------GWDHRIRVYSWRT-----LNPLAVLKYHSA 294 (323)
T ss_pred eeeeeccccCcccccceEEec-CCCccceEEccCCcEEeec---------ccCCcEEEEEecc-----CCchhhhhhhhc
Confidence 99998743 11 11111 2346777888876544433 3666655554332 233455778999
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
.|++++|+|+.+.+|.+|.|+.|-+|.+
T Consensus 295 gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999975
No 162
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=6.4e-14 Score=125.63 Aligned_cols=251 Identities=18% Similarity=0.215 Sum_probs=157.8
Q ss_pred CCCCCEEEEeecCCcEEEeecCCC-------cEEEEEe-cCCCceeeeeecCCe-EEEEEcCCCcccccceEeeeeee-C
Q 024407 3 QANSMTLITGSADQTAKLWNVETG-------AQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIAR-D 72 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~ 72 (268)
++++.+|+|||.|||||+||+.+- +...++. ...++..+...+++. +++.+.++.+ .+.++.+ +
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v------~~~~id~~~ 1131 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV------RVLRIDHYN 1131 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE------EEEEccccc
Confidence 456689999999999999998531 1222232 345566777666544 4444444433 3333332 1
Q ss_pred CCCCCCceEEEEecCC-CCeE-EEEEcCC-CC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEE
Q 024407 73 PADQGGESVLILKGPQ-GRIN-RAVWGPL-NR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF 148 (268)
Q Consensus 73 ~~~~~~~~~~~~~~~~-~~v~-~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l 148 (268)
.......+......+. +.+. +..|... +. .++.+..-+.|..||++.......++....| +.|++++.+|.++.+
T Consensus 1132 ~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h-G~vTSi~idp~~~Wl 1210 (1431)
T KOG1240|consen 1132 VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH-GLVTSIVIDPWCNWL 1210 (1431)
T ss_pred cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc-cceeEEEecCCceEE
Confidence 1112222233333332 2233 2334332 23 6777788899999999987665555433333 679999999999999
Q ss_pred EEeeCCCcEEEEECCCcceeeeeecC--CceeEEEEccCCC--eEEEeecC-CCceEEEeccCCCeeeeEeeehhhhhhh
Q 024407 149 LTGSLDKSAKLWDARTLELIKTYVTE--RPVNAVTMSPLLD--HVVLGGGQ-DASAVTTTDHRAGKFEAKFFDKILQEEI 223 (268)
Q Consensus 149 ~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 223 (268)
++|+..|.+.+||+|-+..+..+.++ .++..+..+|... ...++++. ....+..|+...|.....+|.......+
T Consensus 1211 viGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~l 1290 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPIL 1290 (1431)
T ss_pred EEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcch
Confidence 99999999999999998888877543 3566666666544 44444444 7778899998888777767654111111
Q ss_pred c-------cccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 224 G-------GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 224 ~-------~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
. .-+.++-......+...+..+.+|+.|..||.|+..
T Consensus 1291 s~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1291 SYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred hhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 0 011222334445555667889999999999999764
No 163
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.7e-15 Score=116.19 Aligned_cols=242 Identities=14% Similarity=0.237 Sum_probs=143.4
Q ss_pred CCEEEEeecCCcEEEeecCCCcEEEEEec--CC--CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 6 SMTLITGSADQTAKLWNVETGAQLFTFNF--DS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
...+.||+.||+||+||+.....+..+.. +. +-.+++.....++...+ ......+..+.+|+++.. .+++
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~G-tE~~~s~A~v~lwDvR~~-----qq~l 157 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACG-TELTRSDASVVLWDVRSE-----QQLL 157 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEec-cccccCceEEEEEEeccc-----cchh
Confidence 34689999999999999987666554442 22 22233322223332222 112233445555665432 1212
Q ss_pred -EEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC-CEEEEeeCCCcEE
Q 024407 82 -LILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAK 158 (268)
Q Consensus 82 -~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~ 158 (268)
.....|...|+++.|+|.. +.|+|||-||.|.+||++...----+...-.|.+.|..+.|..++ ..+.+-+...+..
T Consensus 158 ~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~ 237 (376)
T KOG1188|consen 158 RQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFA 237 (376)
T ss_pred hhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCcee
Confidence 2345799999999999976 689999999999999987542100000011366778899999777 3588889999999
Q ss_pred EEECCCcceeeeeecCCce-----------eEE-EEccCCCe-EEEeecCCCc--eEEEeccCCCeeeeEeeehhhhhhh
Q 024407 159 LWDARTLELIKTYVTERPV-----------NAV-TMSPLLDH-VVLGGGQDAS--AVTTTDHRAGKFEAKFFDKILQEEI 223 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~-~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~ 223 (268)
+|++..+.++..+..+... .-+ ..+|.+.. .+++++..+. .....+...+. ....+
T Consensus 238 ~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~---------~~~~~ 308 (376)
T KOG1188|consen 238 IYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS---------LLTEP 308 (376)
T ss_pred EEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccc---------ccCcc
Confidence 9999987765444322100 011 12343332 2333321111 11111111111 11223
Q ss_pred ccccc-cccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 224 GGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 224 ~~~~~-h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+++ |...|.++.|.-.+..+.|||+||.+.+|..+..
T Consensus 309 a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 309 AILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred ccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCc
Confidence 34555 6677888889888899999999999999996543
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.64 E-value=9.7e-15 Score=123.65 Aligned_cols=227 Identities=13% Similarity=0.182 Sum_probs=156.6
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
.||.||+.|+||+.|+.|.+|+.+- +-+..+.|...|.+..|.|-.+.++.++=...-+|+.. . +.
T Consensus 60 Ays~dGkrFASG~aDK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~------q-------K~ 125 (1081)
T KOG1538|consen 60 AYAKDGKRFASGSADKSVIIWTSKL-EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE------Q-------KS 125 (1081)
T ss_pred EEccCCceeccCCCceeEEEecccc-cceeeeccCCeeeEeecCchHHHhhhcchhhccccChh------h-------hh
Confidence 3789999999999999999998653 33456678888999999886665544331111222221 1 11
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC-----CEEEEeeCCC
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-----SHFLTGSLDK 155 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-----~~l~s~~~d~ 155 (268)
+... .....+.++.|+.||.+++.|-.+|+|-+-+...... -.+..-.+-.++|++++|+|.+ ..++.+.+..
T Consensus 126 V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek-~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q 203 (1081)
T KOG1538|consen 126 VSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK-VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ 203 (1081)
T ss_pred HHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc-eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence 1110 1235688899999999999999999999875433222 2233334567899999999864 3688889999
Q ss_pred cEEEEECCCcceee-eeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 156 SAKLWDARTLELIK-TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 156 ~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
++.+|.+.. +.+. .-..+-...++++.+++.++++++.+....+...+. . .++++-....+|+
T Consensus 204 TLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G---v------------rLGTvg~~D~WIW 267 (1081)
T KOG1538|consen 204 TLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG---V------------RLGTVGEQDSWIW 267 (1081)
T ss_pred eeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC---e------------EEeeccccceeEE
Confidence 999998764 3333 222344567889999999999988776655544331 1 1122222345899
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEee
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
.++..|++++++.|+.||+|-.|++
T Consensus 268 tV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 268 TVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEEccCCceEEEEEccCeeehhhh
Confidence 9999999999999999999988754
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.64 E-value=1.5e-14 Score=118.66 Aligned_cols=231 Identities=15% Similarity=0.138 Sum_probs=149.0
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEecC---CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
++++.++. .++|+||....+..-.+-+. ..+.++.|.....+++++.++. .+..+.+........++..
T Consensus 4 Nl~~aS~g-d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gd-------k~~~~~~K~g~~~~Vp~~~ 75 (673)
T KOG4378|consen 4 NLHVASTG-DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGD-------KVMRIKEKDGKTPEVPRVR 75 (673)
T ss_pred ceeeeccC-CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCc-------eeEEEecccCCCCccceee
Confidence 34444444 47899999876655444432 2256777766555444443321 1112211111111123222
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
..+.+ .-.|+.-...+.++++||..+.|+|||++...+.+.+ ..|++.|++|.+....+||++++..|-|.+..+.
T Consensus 76 k~~gd-~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l---kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~ 151 (673)
T KOG4378|consen 76 KLTGD-NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFL---KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK 151 (673)
T ss_pred ccccc-hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhc---cCCcceeEEEEecCCcceeEEeccCCcEEEEecc
Confidence 22222 1122322333479999999999999999954433433 4799999999999999999999999999999999
Q ss_pred CcceeeeeecC--CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC
Q 024407 164 TLELIKTYVTE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241 (268)
Q Consensus 164 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 241 (268)
++..-..+.++ ..+.-+.++|.....+...++ .+.+..||.....-. ..-.+.|..+...++|+|.
T Consensus 152 t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd-~G~VtlwDv~g~sp~-----------~~~~~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 152 TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD-KGAVTLWDVQGMSPI-----------FHASEAHSAPCRGICFSPS 219 (673)
T ss_pred cCccccceecCCCCeEEEeecccccceeeEeecc-CCeEEEEeccCCCcc-----------cchhhhccCCcCcceecCC
Confidence 87766666543 345678899987666655544 456778886532211 1113468999999999996
Q ss_pred C-CeEEeeeCCCeEEEEeeCC
Q 024407 242 G-KSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 242 ~-~~lasgs~Dg~i~i~~~~~ 261 (268)
. ..|||.+.|+.|.+|+...
T Consensus 220 ne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 220 NEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred ccceEEEecccceEEEeeccc
Confidence 5 6699999999999998764
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.64 E-value=1e-12 Score=110.98 Aligned_cols=236 Identities=25% Similarity=0.482 Sum_probs=160.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc-EEEEEec-CC-Cceeeee-ecCCe-EEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA-QLFTFNF-DS-PARSVDF-AVGDK-LAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~-~~~~~~~-~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
|.+++..++.++.|+.+++|+..... ....+.. .. .+..+.+ .+... .+..... .+..+.++....
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~~~~----- 143 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS----LDGTVKLWDLST----- 143 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCC----CCccEEEEEecC-----
Confidence 57788889999999999999998886 5555543 22 4555555 44333 2222111 122344444321
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EEEEeeCC
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLD 154 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d 154 (268)
.......+.+|...|..+.|+|+++.+++++. |+.+++|++..++.+..+. +|...|.+++++|++. .+++++.|
T Consensus 144 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA---GHTDPVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec---cCCCceEEEEEcCCcceEEEEecCC
Confidence 13566778899999999999999998888885 9999999999866655543 4889999999999998 55666999
Q ss_pred CcEEEEECCCcceee-eeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 155 KSAKLWDARTLELIK-TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
+.|++||.+.++.+. .+..........++|.+..++ +++.+ ..+..|+.+....... .+.+|...|
T Consensus 221 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d-~~~~~~~~~~~~~~~~-----------~~~~~~~~v 287 (466)
T COG2319 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLA-SGSSD-GTIRLWDLRSSSSLLR-----------TLSGHSSSV 287 (466)
T ss_pred CcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEE-EecCC-CcEEEeeecCCCcEEE-----------EEecCCccE
Confidence 999999998777666 333222221226888763333 33333 3455555443222111 113567889
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.++.|+|++..+++++.|+.+++|.....
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 99999999988888999999999966544
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=1.7e-12 Score=107.79 Aligned_cols=243 Identities=12% Similarity=0.131 Sum_probs=143.2
Q ss_pred CCCCCCEEEEee-cCCcEEEeecC-CCcE--EEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQANSMTLITGS-ADQTAKLWNVE-TGAQ--LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~d~~~l~s~s-~D~tv~~wd~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
|+||++.|+.++ .++.|..|+++ +++. +........+..+.++|.++.+.+++.. .+.+.++++.... ..
T Consensus 42 ~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g--~~ 115 (330)
T PRK11028 42 ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN----ANCVSVSPLDKDG--IP 115 (330)
T ss_pred ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC----CCeEEEEEECCCC--CC
Confidence 789999987664 58999999997 3433 2223334456788888887776665421 2344444442110 01
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeeec----ccccCcccceEEEEEcCCCCEEEEee
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIIS-AGEDAIVRIWDTETGKLLKES----DKETGHKKTITSLAKAADGSHFLTGS 152 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~----~~~~~h~~~v~~v~~s~~~~~l~s~~ 152 (268)
.+.+..+.+ ......+.++|+++++++ ...++.|.+||+.+...+... ... ........++|+|++.+++++.
T Consensus 116 ~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 116 VAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred CCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECCCCCEEEEEe
Confidence 112222322 234567889999998854 456799999999763322110 000 0123355789999999998776
Q ss_pred C-CCcEEEEECCC--c--ceeeeeec-------CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh
Q 024407 153 L-DKSAKLWDART--L--ELIKTYVT-------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220 (268)
Q Consensus 153 ~-d~~i~iwd~~~--~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 220 (268)
. +++|.+||++. + +.++.+.. +.....+.++|++++++++.. ....+..++........++...
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-~~~~I~v~~i~~~~~~~~~~~~--- 269 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-TASLISVFSVSEDGSVLSFEGH--- 269 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-CCCeEEEEEEeCCCCeEEEeEE---
Confidence 5 89999999973 2 22333221 112235778998887776533 2334444443211101111100
Q ss_pred hhhccccccccceEEEEECCCCCeEEeeeC-CCeEEEEeeCCC
Q 024407 221 EEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFDPD 262 (268)
Q Consensus 221 ~~~~~~~~h~~~v~~~~~sp~~~~lasgs~-Dg~i~i~~~~~~ 262 (268)
.... .....+.|+|||++|+++.. +++|.+|+++.+
T Consensus 270 -----~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 270 -----QPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred -----Eecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 0000 12346899999999887775 899999998754
No 168
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=7.6e-14 Score=110.42 Aligned_cols=245 Identities=13% Similarity=0.172 Sum_probs=151.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEec--CCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|++.=..|+++..|-+||+||-+. +....+++ ...+.+++|.|.. ..+++++...+++|....--.+.+.-...+.
T Consensus 106 WhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~ 184 (445)
T KOG2139|consen 106 WHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMST 184 (445)
T ss_pred echhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccc
Confidence 455445689999999999999665 44445543 4568899999843 3344444444444444332222221111222
Q ss_pred ceEEEE--ecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 79 ESVLIL--KGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 79 ~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
.+...+ +|| .+|+++.|.+||..+++++ .|..|.|||..++..+.-... -...+.-+.||||+.+|.+++.|+
T Consensus 185 ~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~---glgg~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 185 HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK---GLGGFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---CCCceeeEEEcCCCCEEEEecccc
Confidence 333334 355 7899999999999999887 567799999999865432211 235677899999999999999999
Q ss_pred cEEEEECCCc-ceeeeeecCCceeEEEEccCCCeEEEeecCCCce-EEEeccCCCeee------eEe--eehhhhhhh--
Q 024407 156 SAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASA-VTTTDHRAGKFE------AKF--FDKILQEEI-- 223 (268)
Q Consensus 156 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~------~~~--~~~~~~~~~-- 223 (268)
..++|..... ..++-......+....|+|.+..+++++...... -...+.+.+... ... .+...-...
T Consensus 261 vfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag 340 (445)
T KOG2139|consen 261 VFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG 340 (445)
T ss_pred eeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcC
Confidence 9999965432 2222222344788899999999888766544322 222333332222 000 111000000
Q ss_pred ccccccccceEEEEECCCCCeEEeeeCCCe
Q 024407 224 GGVKGHFGPINALAFNPDGKSFSSGGEDGY 253 (268)
Q Consensus 224 ~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~ 253 (268)
+.+. -+...+++|.|.|.|+|+--..+.
T Consensus 341 ~~l~--cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 341 QRLC--CGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cccc--cCccceeeECCCCCEEEEEEcCCc
Confidence 0111 256789999999999998665443
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.61 E-value=1.8e-14 Score=112.36 Aligned_cols=192 Identities=17% Similarity=0.310 Sum_probs=128.9
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEec---C---CCceeeeeecCCeEEEEEcCCCcccccc-------------
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFNF---D---SPARSVDFAVGDKLAVITTDPFMELNSA------------- 63 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 63 (268)
.|+..++++.|.|.-|++||.-+|++..+++. - ...++++|+|++..+.++-...+..+..
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhh
Confidence 47889999999999999999999988777652 1 2256888888665554432211111110
Q ss_pred -------eEeee----------------ee---eCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 024407 64 -------IHVKR----------------IA---RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWD 116 (268)
Q Consensus 64 -------~~~~~----------------~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd 116 (268)
..+.. .. .......+.++..+-||.+.|+.+.|.++|++|.+|+ .|..|..||
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 00000 00 0011234678888899999999999999999999987 688899999
Q ss_pred CCCCce-eeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCC-cceeeee-ecCCceeEEEEccCCCeEEEee
Q 024407 117 TETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTY-VTERPVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 117 ~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 193 (268)
++..+. +..+....+-+.+-.-.+..|++++|++++.||.|++||++. +..+..+ ....-++.++++|.....+.+.
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred ehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 987432 233332112122334456779999999999999999999997 4433333 2345688999999865555444
Q ss_pred c
Q 024407 194 G 194 (268)
Q Consensus 194 ~ 194 (268)
|
T Consensus 360 G 360 (406)
T KOG2919|consen 360 G 360 (406)
T ss_pred C
Confidence 3
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.61 E-value=4.5e-12 Score=107.05 Aligned_cols=236 Identities=30% Similarity=0.520 Sum_probs=161.5
Q ss_pred CCCCC-EEEEeec-CCcEEEeecCC-CcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 3 QANSM-TLITGSA-DQTAKLWNVET-GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 3 s~d~~-~l~s~s~-D~tv~~wd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
++++. .++..+. |+++++||+.. ......+. +...+..+.+++.....+.... .+..+.+|.... .
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~ 188 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS----LDGTIKLWDLRT------G 188 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC----CCCceEEEEcCC------C
Confidence 45666 5555455 99999999987 55555554 5667888999998764444321 234455554432 4
Q ss_pred ceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
..+..+.+|...|.++.|+|+++ .+++++.|+.|++||...+..... ...+|...+ -..|++++..+++++.|+.+
T Consensus 189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~ 265 (466)
T COG2319 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSLLASGSSDGTI 265 (466)
T ss_pred ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECCCCCEEEEecCCCcE
Confidence 56777888999999999999998 556669999999999886665542 123566664 33799999889999999999
Q ss_pred EEEECCCcce-eeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 158 KLWDARTLEL-IKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 158 ~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
++||.+.... +..+ .+...+..+.+.|....+++ ++.+ ..+..|+........... ...|...+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 333 (466)
T COG2319 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GSSD-GTVRLWDLETGKLLSSLT----------LKGHEGPVSS 333 (466)
T ss_pred EEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-eeCC-CcEEEEEcCCCceEEEee----------ecccCCceEE
Confidence 9999986654 3333 34567888899996666665 5555 446666665544322211 1246667889
Q ss_pred EEECCCCCeEEee-eCCCeEEEEeeCCCc
Q 024407 236 LAFNPDGKSFSSG-GEDGYVRLHHFDPDY 263 (268)
Q Consensus 236 ~~~sp~~~~lasg-s~Dg~i~i~~~~~~~ 263 (268)
+.|.+++..++.+ ..|+.+++|......
T Consensus 334 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 9994343455555 688999998887654
No 171
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.61 E-value=1.9e-14 Score=119.03 Aligned_cols=167 Identities=19% Similarity=0.315 Sum_probs=119.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+|||.-|+|++.||.||+|.-...-.....+...++++++|.|.+.-++.+.++ .+.++.+. ....+
T Consensus 112 W~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~------h~~IKpL~------~n~k~ 179 (737)
T KOG1524|consen 112 WSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG------HISIKPLA------ANSKI 179 (737)
T ss_pred cCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC------eEEEeecc------cccce
Confidence 8999999999999999999985433222223456789999999977655554432 22222222 22345
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
...++|.+-|.++.|+|.++.+++||.|-..++||..-..... ...|..+|++++|.|+ ..++.++. +++++=.
T Consensus 180 i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~----S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~ 253 (737)
T KOG1524|consen 180 IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT----SAAEEYAITSVAFNPE-KDYLLWSY-NTARFSS 253 (737)
T ss_pred eEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc----CChhccceeeeeeccc-cceeeeee-eeeeecC
Confidence 5688999999999999999999999999999999976443322 2358899999999999 66666655 4455333
Q ss_pred CCCcceeeeeecCCceeEEEEccCCCeEEEeecCC
Q 024407 162 ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 196 (268)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (268)
++ ...+..++|++++..+..+.+.+
T Consensus 254 p~----------~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 254 PR----------VGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred CC----------ccceEEEEEcCCCceeeccccCc
Confidence 32 24678899999987666554443
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.60 E-value=6.4e-12 Score=104.32 Aligned_cols=241 Identities=13% Similarity=0.109 Sum_probs=139.9
Q ss_pred EEEeecCCcEEEeecCC-Cc--EEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEe
Q 024407 9 LITGSADQTAKLWNVET-GA--QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 85 (268)
Q Consensus 9 l~s~s~D~tv~~wd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (268)
+++.+.|++|++||+.+ ++ .+..+...+.+..+.++|+.+.+.++... ...+..+++. .. .....+....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~----~~~i~~~~~~-~~--g~l~~~~~~~ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP----EFRVLSYRIA-DD--GALTFAAESP 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC----CCcEEEEEEC-CC--CceEEeeeec
Confidence 45557899999999964 33 44455555567788889887766554322 2333334432 10 0001111111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcee-eecccccCcccceEEEEEcCCCCEEEE-eeCCCcEEEEEC
Q 024407 86 GPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDA 162 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~~~~~l~s-~~~d~~i~iwd~ 162 (268)
..+....+.|+|+++++++++ .++.|.+||+.+.... ...... .+......++++|++.++++ ...++.|.+||+
T Consensus 78 -~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 78 -LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred -CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 223467899999999888776 5899999999743211 111111 12234566789999998865 456799999999
Q ss_pred CCcceee-------eeecCCceeEEEEccCCCeEEEeecCCCceEEEeccC--CCeeeeEeeehhhhhhhccccccccce
Q 024407 163 RTLELIK-------TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 163 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
++...+. ..........+.++|++.+++++...+ ..+..++.. .+.+.. ....... -.... +....
T Consensus 156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-~~v~v~~~~~~~~~~~~--~~~~~~~-p~~~~-~~~~~ 230 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-SSVDVWQLKDPHGEIEC--VQTLDMM-PADFS-DTRWA 230 (330)
T ss_pred CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-CEEEEEEEeCCCCCEEE--EEEEecC-CCcCC-CCccc
Confidence 7632221 111233456789999888776664422 344455443 222211 1100000 00001 11234
Q ss_pred EEEEECCCCCeEEeee-CCCeEEEEeeCCCc
Q 024407 234 NALAFNPDGKSFSSGG-EDGYVRLHHFDPDY 263 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs-~Dg~i~i~~~~~~~ 263 (268)
..+.++|++++++++. .++.|.+|+++.+-
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 4689999999988875 47899999997553
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.1e-14 Score=112.55 Aligned_cols=149 Identities=21% Similarity=0.311 Sum_probs=102.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC--CCCEEEEeeCCCcEEEEECCCcceeeeeec--CC-
Q 024407 101 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYVT--ER- 175 (268)
Q Consensus 101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~- 175 (268)
..++++...|.|++||..+++.+..++ +++..++.++|.. .+..+.+|+.||+|++||+|.......+.. ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk---~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK---GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec---CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 367888899999999999987766554 6777788888876 456788999999999999998755444322 22
Q ss_pred -ceeEEEEccCCCeEEEeec---CCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC-CeEEeeeC
Q 024407 176 -PVNAVTMSPLLDHVVLGGG---QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGE 250 (268)
Q Consensus 176 -~~~~~~~~~~~~~~~~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~lasgs~ 250 (268)
+..+++..-. +.++.++. .....+..||.|...-.... -...|.+.|+++.|+|.. +.|+|||-
T Consensus 118 ~~f~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~----------~~eSH~DDVT~lrFHP~~pnlLlSGSv 186 (376)
T KOG1188|consen 118 TPFICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQ----------LNESHNDDVTQLRFHPSDPNLLLSGSV 186 (376)
T ss_pred CcceEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhh----------hhhhccCcceeEEecCCCCCeEEeecc
Confidence 3344443322 33444432 12234566666543221111 134799999999999966 77999999
Q ss_pred CCeEEEEeeCCCc
Q 024407 251 DGYVRLHHFDPDY 263 (268)
Q Consensus 251 Dg~i~i~~~~~~~ 263 (268)
||.|.||+...+.
T Consensus 187 DGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 187 DGLVNLFDTKKDN 199 (376)
T ss_pred cceEEeeecCCCc
Confidence 9999999988763
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.1e-13 Score=120.82 Aligned_cols=238 Identities=17% Similarity=0.230 Sum_probs=139.6
Q ss_pred CCCEEEEeecCCcEEEeec-----CCCcEEEEEec-C-------CCceeeeeecCCeEEEEEcCCCcccccceEeeeeee
Q 024407 5 NSMTLITGSADQTAKLWNV-----ETGAQLFTFNF-D-------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR 71 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~-----~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (268)
|..+|++||.||.||+|+- ++.+.+..+.. . +.-..++|-.....++++++ ...+++|+..+
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-----~r~IRIWDa~~ 1196 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-----VRSIRIWDAHK 1196 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-----eeEEEEEeccc
Confidence 5567999999999999963 22344444431 0 11122333332222333222 23455555543
Q ss_pred CCCCCCCceEEEEe-cCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccc--eEEEEEcCCCCE
Q 024407 72 DPADQGGESVLILK-GPQGRINRAVW-GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT--ITSLAKAADGSH 147 (268)
Q Consensus 72 ~~~~~~~~~~~~~~-~~~~~v~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--v~~v~~s~~~~~ 147 (268)
+ .....+. +....|+++.= .+.|+.+++|..||.||+||.+....-..+.....|+.. |..+.+.+.|-.
T Consensus 1197 E------~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~ 1270 (1387)
T KOG1517|consen 1197 E------QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG 1270 (1387)
T ss_pred c------eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc
Confidence 2 1222222 22344555542 234689999999999999999875432222222357666 999999886654
Q ss_pred -EEEeeCCCcEEEEECCCcceeeee--ec----CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee-eEeeehhh
Q 024407 148 -FLTGSLDKSAKLWDARTLELIKTY--VT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE-AKFFDKIL 219 (268)
Q Consensus 148 -l~s~~~d~~i~iwd~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 219 (268)
|++++.||.|.+||+|....+..+ .. .....++..++.-.. +++++. ..+..|+....... .+..+...
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi-iAsGs~--q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI-IASGSA--QLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe-eeecCc--ceEEEEecChhhhcccccCcccc
Confidence 999999999999999984222211 11 223777888886544 444333 34455543322211 11111111
Q ss_pred hhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 220 ~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
++ ....+.|++|+|.-..+|.|+.|.+|.||...++.
T Consensus 1348 ~q-------~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQ-------RIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cC-------cCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 11 12457999999999999999999999999887654
No 175
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.58 E-value=6.8e-13 Score=114.94 Aligned_cols=232 Identities=18% Similarity=0.220 Sum_probs=164.1
Q ss_pred CCEEEEeecCCcEEEeecCCC-----cEEEEEecCCCceeeeeecC---CeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 6 SMTLITGSADQTAKLWNVETG-----AQLFTFNFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
|..++++..++.+.+|+.... ..+...+....--...+||. +++++.+..+ ...+|.+ .+
T Consensus 124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G------~lql~Nv------rt 191 (910)
T KOG1539|consen 124 GEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQG------RLQLWNV------RT 191 (910)
T ss_pred cceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCC------cEEEEEe------cc
Confidence 556889999999999998773 11111222222122234553 3445544443 3344443 45
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCc-ccceEEEEEcCCCCEE-EEeeCCC
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHF-LTGSLDK 155 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~~~l-~s~~~d~ 155 (268)
++.+..++++...|+++.-+|-=..++.|..+|+|.|++++.++.+..++ | .++|++++|..||+.+ ++++..|
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk----~d~g~VtslSFrtDG~p~las~~~~G 267 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK----QDWGRVTSLSFRTDGNPLLASGRSNG 267 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE----ccccceeEEEeccCCCeeEEeccCCc
Confidence 67889999999999999999988899999999999999999999998886 4 4899999999999865 5666779
Q ss_pred cEEEEECCCcceeeeee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 156 SAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 156 ~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
.+.+||+...+.+.... +...+....+-|....++.++.+....++..|...|. +..++.-.||+.|-
T Consensus 268 ~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~----------pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 268 DMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV----------PRLLRSRGGHSAPP 337 (910)
T ss_pred eEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc----------chheeeccCCCCCc
Confidence 99999999876655443 3345666777775444444444444455555633332 22234456899999
Q ss_pred EEEEEC-CCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 234 NALAFN-PDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 234 ~~~~~s-p~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
.|+.|- .+|..+.++++|++.|.+.+..|.
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~ 368 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISES 368 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHH
Confidence 999997 688899999999999988776653
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.57 E-value=2.2e-13 Score=104.85 Aligned_cols=212 Identities=23% Similarity=0.319 Sum_probs=144.7
Q ss_pred CCCceeeeeecCCeEEEEEc-C--CCcccccceEeeeeeeCCC---CCCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEe
Q 024407 35 DSPARSVDFAVGDKLAVITT-D--PFMELNSAIHVKRIARDPA---DQGGESVLILK-GPQGRINRAVWGPLNRTIISAG 107 (268)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~ 107 (268)
.+.|..++-+|-++.+++.. + +.........+|.++.... ..+-+++..|. .+-+.|.|+.|.|++..+++-.
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 44555555566443322221 1 1122334556777765432 23345555565 5667999999999999988664
Q ss_pred CCCcEEEEECCCCcee-eecc--cccCcccceEEEEEcC--CCCEEEEeeCCCcEEEEECCCcceeeeee--cCCceeEE
Q 024407 108 EDAIVRIWDTETGKLL-KESD--KETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAV 180 (268)
Q Consensus 108 ~dg~i~iwd~~~~~~~-~~~~--~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~ 180 (268)
|+.|.+|++..+..+ ..+. ...+++...++-+|+| +++.+++. .|+++..||+|+..+...+. +...+..+
T Consensus 143 -dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdl 220 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDL 220 (370)
T ss_pred -cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeec
Confidence 899999999887552 2221 1124566677778887 56666554 57999999999876655543 34468889
Q ss_pred EEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC-CeEEeeeCCCeEEEEee
Q 024407 181 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~lasgs~Dg~i~i~~~ 259 (268)
.++|...++++++|+++ .+..||.|.-.. .+.++.+|+.+|+++.|+|.. +.|.|||.|..|.+|-.
T Consensus 221 DfNpnkq~~lvt~gDdg-yvriWD~R~tk~-----------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 221 DFNPNKQHILVTCGDDG-YVRIWDTRKTKF-----------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred cCCCCceEEEEEcCCCc-cEEEEeccCCCc-----------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 99999888888887775 577788764322 345578899999999999965 66889999999999865
Q ss_pred C
Q 024407 260 D 260 (268)
Q Consensus 260 ~ 260 (268)
.
T Consensus 289 ~ 289 (370)
T KOG1007|consen 289 S 289 (370)
T ss_pred c
Confidence 3
No 177
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=1.1e-12 Score=100.05 Aligned_cols=153 Identities=17% Similarity=0.269 Sum_probs=102.4
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEECCCC-ceeeecccccCcccceEEEEEcCCCCEEEEe--eCCCcEE
Q 024407 92 NRAVWGPLNRTIISAGE----------DAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTG--SLDKSAK 158 (268)
Q Consensus 92 ~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~--~~d~~i~ 158 (268)
..+.|+|+|.+|+.-.. -+...+|-++.. .....+.. ....+|.+++|+|+|+.++++ ..+..|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l--~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL--KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec--cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 34678888876643322 133445554322 22222221 234579999999999997655 4577999
Q ss_pred EEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCC-CceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 159 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
+||++ .+.+..+. ....+.+.|+|.+..+++++..+ .+.+..||.+...... .. .| ..++.++
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~------------~~-~~-~~~t~~~ 150 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS------------TF-EH-SDATDVE 150 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee------------cc-cc-CcEEEEE
Confidence 99997 55555654 45678999999998888775332 3557777766433221 11 13 3478999
Q ss_pred ECCCCCeEEeeeC------CCeEEEEeeCCC
Q 024407 238 FNPDGKSFSSGGE------DGYVRLHHFDPD 262 (268)
Q Consensus 238 ~sp~~~~lasgs~------Dg~i~i~~~~~~ 262 (268)
|+|||++|+++.. |..++||++.++
T Consensus 151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 151 WSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 9999999998874 788999999887
No 178
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.3e-13 Score=106.85 Aligned_cols=216 Identities=20% Similarity=0.284 Sum_probs=130.2
Q ss_pred CCCEEEEeecCCcEEEeecCC------CcEE---EEE-ecCCCceeeeeecC---CeEEEEEcCCCcccccceEe-----
Q 024407 5 NSMTLITGSADQTAKLWNVET------GAQL---FTF-NFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHV----- 66 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~------~~~~---~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----- 66 (268)
-|+.+|++|.|+|+++|.-+. ++.- ..+ .....+..++|.|. -.++.++.++++++......
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 588999999999999997521 1111 111 23566888999884 34555555554433332211
Q ss_pred eeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCC---CEEEEEeCC-----CcEEEEECCCCc-eeeecccccCcccceE
Q 024407 67 KRIARDPADQGGESVLILKGPQGRINRAVWGPLN---RTIISAGED-----AIVRIWDTETGK-LLKESDKETGHKKTIT 137 (268)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d-----g~i~iwd~~~~~-~~~~~~~~~~h~~~v~ 137 (268)
|.+..+ .+ ..+.....+..+-.|+.|+|.. .+|+.|+.+ +.++||....+. ....+....+|+.+|+
T Consensus 152 W~Lq~E--i~--~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~ 227 (361)
T KOG2445|consen 152 WTLQHE--IQ--NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIR 227 (361)
T ss_pred chhhhh--hh--hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcce
Confidence 111110 00 0000011345566788999753 356666555 478899765532 3333444568999999
Q ss_pred EEEEcCCC----CEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeE
Q 024407 138 SLAKAADG----SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK 213 (268)
Q Consensus 138 ~v~~s~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 213 (268)
+++|.|.- ..|++|+.|| |+||.++.... .+..+. ...|.. .. + +.
T Consensus 228 di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s--~i~~ee-----~~~~~~---------~~------~-----l~-- 277 (361)
T KOG2445|consen 228 DISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS--AIEEEE-----VLAPDL---------MT------D-----LP-- 277 (361)
T ss_pred eeeeccccCCceeeEEEeecCc-EEEEEEeeccc--hhhhhc-----ccCCCC---------cc------c-----cc--
Confidence 99999963 3688999999 99999874211 000000 001110 00 0 00
Q ss_pred eeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 214 FFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
-+.+..+.+|...|..+.|+--|..|+|.|.||.+|+|+..
T Consensus 278 ------v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 278 ------VEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ------eEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 11123456798999999999999999999999999999753
No 179
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=2.6e-12 Score=102.01 Aligned_cols=191 Identities=13% Similarity=0.179 Sum_probs=133.6
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
+||..=-.|++...-..+|+.+.++...+..+.+..+|..+.+...-.+++ +...+.+.++. ..+.
T Consensus 53 LFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~--------Lee~IyIydI~------~Mkl 118 (391)
T KOG2110|consen 53 LFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVC--------LEESIYIYDIK------DMKL 118 (391)
T ss_pred ecccceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEE--------EcccEEEEecc------ccee
Confidence 355543334444222449999999999999888889988888764332222 23334454442 3344
Q ss_pred EEEEe---cCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 81 VLILK---GPQGRINRAVWGPLNRTIISA--GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 81 ~~~~~---~~~~~v~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
++.+. .+...+..+.+++.+.+++-- -..|.|.+||+.+-+.+..+. .|++.+-+++|+++|.+||||+.-|
T Consensus 119 LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKG 195 (391)
T KOG2110|consen 119 LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKG 195 (391)
T ss_pred ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCc
Confidence 44443 344557777777777788743 256899999999887777665 7999999999999999999999999
Q ss_pred c-EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 156 S-AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 156 ~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
+ ||+|...+++.+..+.... ....|.
T Consensus 196 TVIRVf~v~~G~kl~eFRRG~-----------------------------------------------------~~~~Iy 222 (391)
T KOG2110|consen 196 TVIRVFSVPEGQKLYEFRRGT-----------------------------------------------------YPVSIY 222 (391)
T ss_pred eEEEEEEcCCccEeeeeeCCc-----------------------------------------------------eeeEEE
Confidence 8 5788877665544331100 012478
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+++|+|++++|++.|+.++|.||.++.
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEecc
Confidence 899999999999999999999998863
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.56 E-value=4.8e-14 Score=116.69 Aligned_cols=148 Identities=22% Similarity=0.420 Sum_probs=111.3
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------Cceeee-------------------ccc------
Q 024407 83 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET---------GKLLKE-------------------SDK------ 128 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~-------------------~~~------ 128 (268)
.+.+|.+.+.+..|+|+|.-|+++|.||.|+||.-.- +..++. +++
T Consensus 99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k 178 (737)
T KOG1524|consen 99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSK 178 (737)
T ss_pred hhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccc
Confidence 3568999999999999999999999999999996320 111100 000
Q ss_pred ---ccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEecc
Q 024407 129 ---ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 205 (268)
Q Consensus 129 ---~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 205 (268)
=.+|.+.|.+++|++.++.+++++.|-..++||.........-.+++++.+++|.|+ ..+++. +..
T Consensus 179 ~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~-S~n--------- 247 (737)
T KOG1524|consen 179 IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLW-SYN--------- 247 (737)
T ss_pred eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeee-eee---------
Confidence 036889999999999999999999999999999877666666678889999999997 333322 111
Q ss_pred CCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEE
Q 024407 206 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH 257 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~ 257 (268)
.+++ . +...+.|..++|||||..++.|...|.+-+=
T Consensus 248 -----t~R~-~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 248 -----TARF-S----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred -----eeee-c----------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 0111 1 1234679999999999999999999987553
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.55 E-value=4.1e-13 Score=104.66 Aligned_cols=162 Identities=19% Similarity=0.293 Sum_probs=119.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc-c
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-E 166 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~-~ 166 (268)
-.+|++.+|++|...++.+-....|.||.....+..........|...|+.+++.|.++.|++++.|....+|....+ +
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 468999999999999999999999999999877644444444579999999999999999999999999999998443 2
Q ss_pred e---eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC
Q 024407 167 L---IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 243 (268)
Q Consensus 167 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 243 (268)
- +--+..++...++.|+|....++++++..-..+..+....--+..+ + + -+.+.+.|++++|+|++-
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK-------h-i--kkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK-------H-I--KKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh-------h-h--CCccccceeeeeccCCcc
Confidence 2 2223467788999999987666665443322222222111111100 0 0 123567899999999999
Q ss_pred eEEeeeCCCeEEEEee
Q 024407 244 SFSSGGEDGYVRLHHF 259 (268)
Q Consensus 244 ~lasgs~Dg~i~i~~~ 259 (268)
.+|.||.|+.+|||..
T Consensus 160 LlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSA 175 (361)
T ss_pred eecccccCcceeEEEE
Confidence 9999999999999853
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.54 E-value=5.8e-13 Score=106.74 Aligned_cols=155 Identities=24% Similarity=0.332 Sum_probs=113.0
Q ss_pred cCCCceeeeeecCCe-EEEEEcCCCcccccceEeeeeeeCCCCCC---CceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 024407 34 FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQG---GESVLILKGPQGRINRAVWGPLNRTIISAGED 109 (268)
Q Consensus 34 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 109 (268)
...++..+.++.+.. .+..+. .+..+.+|.+.+.....+ -+....|..|+..|+.+.|+|+|+.+++|+.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G-----~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAG-----GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred CCCceEEEEeccCcccceeccc-----CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 456777788877554 222221 245667777766543332 23455678999999999999999999999999
Q ss_pred CcEEEEECC--------C-----CceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee-cCC
Q 024407 110 AIVRIWDTE--------T-----GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TER 175 (268)
Q Consensus 110 g~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~ 175 (268)
|.|.+|-.. + .+.....+..-+|...+..++|++++..+++++.|+++++||++.+..+..+. ++.
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 999999766 2 11111222234799999999999999999999999999999999998877654 445
Q ss_pred ceeEEEEccCCCeEEEee
Q 024407 176 PVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~ 193 (268)
-++.++|.|...+++.-+
T Consensus 167 yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKS 184 (434)
T ss_pred ccceeecchhhhhhhhhc
Confidence 678888988766655433
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=5.6e-12 Score=100.10 Aligned_cols=148 Identities=13% Similarity=0.214 Sum_probs=111.5
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEecC--CCceeeeeecCCe--EEEEEcCCCcccccceEeeeeeeCCCCCCCceEE
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDK--LAVITTDPFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
+.|+.+=.+. |.+||+++.+.+..++.. .+-...++++... .++.-.+. ..+.+.+++.. +-+++.
T Consensus 98 ~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~---t~GdV~l~d~~------nl~~v~ 167 (391)
T KOG2110|consen 98 KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST---TSGDVVLFDTI------NLQPVN 167 (391)
T ss_pred ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC---CCceEEEEEcc------cceeee
Confidence 3566666665 999999999999888743 3444556665432 22222111 12333344332 346778
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 83 ILKGPQGRINRAVWGPLNRTIISAGEDAI-VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
.+.+|.+++-+++|+|+|.+|+|+|..|+ ||++.+.+|+.+.++.+.. ....+.+++|++++.+|++.+..++|.+|.
T Consensus 168 ~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 168 TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 89999999999999999999999999998 6799999999888886543 367789999999999999999999999999
Q ss_pred CCCc
Q 024407 162 ARTL 165 (268)
Q Consensus 162 ~~~~ 165 (268)
+...
T Consensus 247 L~~~ 250 (391)
T KOG2110|consen 247 LEKV 250 (391)
T ss_pred eccc
Confidence 8754
No 184
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.8e-14 Score=125.64 Aligned_cols=197 Identities=19% Similarity=0.307 Sum_probs=140.0
Q ss_pred CCCCCC-EEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~-~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|++.+. .||||+.||.|.|||+.+.+.-... +.
T Consensus 124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~-------------~~--------------------------------- 157 (1049)
T KOG0307|consen 124 FNPFQGNLLASGADDGEILIWDLNKPETPFTP-------------GS--------------------------------- 157 (1049)
T ss_pred ccccCCceeeccCCCCcEEEeccCCcCCCCCC-------------CC---------------------------------
Confidence 667666 9999999999999999874432111 10
Q ss_pred EEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EEEEeeCCC---
Q 024407 81 VLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDK--- 155 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~--- 155 (268)
......|.++.|+..- ..|++++.+|.+.|||++..+.+-.+... +-+..+..++|+|+.. .+++++.|.
T Consensus 158 ----~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 158 ----QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-PGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred ----CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-CCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 0123456777776543 46788999999999999988766544321 1224577899999765 566776655
Q ss_pred cEEEEECCCcc-eeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 156 SAKLWDARTLE-LIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 156 ~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
.|.+||+|.-. .++.+ .|+..+.++.|++.+..++++++.|+. +..|+..++++. .++....+++
T Consensus 233 viqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl------------~~~p~~~nW~ 299 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVL------------GELPAQGNWC 299 (1049)
T ss_pred eeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEe------------eecCCCCcce
Confidence 58999999643 33333 467789999999998888888888865 445666665543 2334445789
Q ss_pred EEEEECCCCC-eEEeeeCCCeEEEEeeCCC
Q 024407 234 NALAFNPDGK-SFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 234 ~~~~~sp~~~-~lasgs~Dg~i~i~~~~~~ 262 (268)
..+.|+|... .++..+-||.|.|+.+.+-
T Consensus 300 fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9999999876 6888999999999988754
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.9e-12 Score=115.03 Aligned_cols=247 Identities=17% Similarity=0.322 Sum_probs=159.6
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC----CCceeeeeecCC--eEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFD----SPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
+|+|-...++++..--.|++||-+.++....|... ..|..+.+..+. .++++++. ++.+++|+-.-...
T Consensus 1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~-----dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASS-----DGVIRIWKDYADKW 1145 (1387)
T ss_pred eecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeecc-----CceEEEeccccccc
Confidence 58888999999998889999999999998887632 335666665543 23333332 23444443221100
Q ss_pred CCCCceEEEE---ec----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc-CCCC
Q 024407 75 DQGGESVLIL---KG----PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGS 146 (268)
Q Consensus 75 ~~~~~~~~~~---~~----~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~~ 146 (268)
...+.+... .+ ..+.-.-+.|.....+|+++|.-..|||||++..+....+.. +....|+++..+ ..|+
T Consensus 1146 -~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~--~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1146 -KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY--GSSTLVTALSADLVHGN 1222 (1387)
T ss_pred -CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc--CCCccceeecccccCCc
Confidence 122222222 11 122223457888888888888899999999998877766653 345667777544 4579
Q ss_pred EEEEeeCCCcEEEEECCCcce---eeeee-cCC--ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh
Q 024407 147 HFLTGSLDKSAKLWDARTLEL---IKTYV-TER--PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220 (268)
Q Consensus 147 ~l~s~~~d~~i~iwd~~~~~~---~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 220 (268)
.+++|..||.|++||.|.... +..+. +.. ++..+.+.+.+-.-++++.. .+.|..||.|....+. +.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~-~G~I~~~DlR~~~~e~-~~----- 1295 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ-DGDIQLLDLRMSSKET-FL----- 1295 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc-CCeEEEEecccCcccc-cc-----
Confidence 999999999999999986432 22221 222 36777777755443333333 3457777776532111 11
Q ss_pred hhhccccccc--c-ceEEEEECCCCCeEEeeeCCCeEEEEeeCCCcceec
Q 024407 221 EEIGGVKGHF--G-PINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 267 (268)
Q Consensus 221 ~~~~~~~~h~--~-~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~~~~ 267 (268)
+...|. + .++++..+++...+|||+. +.|+||...+|..++.
T Consensus 1296 ----~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~ 1340 (1387)
T KOG1517|consen 1296 ----TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNII 1340 (1387)
T ss_pred ----eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhccc
Confidence 112232 2 4899999999999999998 9999999999976653
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=4.2e-12 Score=108.96 Aligned_cols=211 Identities=13% Similarity=0.152 Sum_probs=128.1
Q ss_pred CCCCCCCEEEEeecC---CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 1 MFQANSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D---~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
.|||||+.|+.++.+ .+|++||+.+++...............|+|++..++.+... .+...++.+.. .+
T Consensus 210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~----~g~~~Iy~~d~----~~ 281 (429)
T PRK01742 210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSK----DGVLNIYVMGA----NG 281 (429)
T ss_pred eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEec----CCcEEEEEEEC----CC
Confidence 389999999988765 36999999887643332233445578899977655443221 11223332221 11
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc-eeeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
+ ....+..+...+..+.|+|||+.|+.++ .++...+|++.... ....+ .+.. ....++|||..++.++.++
T Consensus 282 ~-~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~~~--~~~~~SpDG~~ia~~~~~~ 354 (429)
T PRK01742 282 G-TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GGRG--YSAQISADGKTLVMINGDN 354 (429)
T ss_pred C-CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cCCC--CCccCCCCCCEEEEEcCCC
Confidence 2 2334556666788899999999876554 67888888775422 11211 1222 3467999999998887765
Q ss_pred cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEE-EeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 156 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVT-TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 156 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
+.+||+.+++.... ..........|+|++..++.+...+...+. .++ .. +.....+.+|.+.+.
T Consensus 355 -i~~~Dl~~g~~~~l-t~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~-~~------------G~~~~~l~~~~g~~~ 419 (429)
T PRK01742 355 -VVKQDLTSGSTEVL-SSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVS-AD------------GRFKARLPGSDGQVK 419 (429)
T ss_pred -EEEEECCCCCeEEe-cCCCCCCCceECCCCCEEEEEEcCCCceEEEEEE-CC------------CCceEEccCCCCCCC
Confidence 55699988765322 112223456799998877776544333221 111 11 222334556777788
Q ss_pred EEEECCC
Q 024407 235 ALAFNPD 241 (268)
Q Consensus 235 ~~~~sp~ 241 (268)
..+|||-
T Consensus 420 ~p~wsp~ 426 (429)
T PRK01742 420 FPAWSPY 426 (429)
T ss_pred CcccCCC
Confidence 8999984
No 187
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.50 E-value=2.4e-12 Score=100.77 Aligned_cols=168 Identities=18% Similarity=0.265 Sum_probs=126.9
Q ss_pred ecCCCCeEEEEEcC----CC-CEEEEEeCCCcEEEEECCCCceeeec--ccccCcccceEEEEEcCCC----CEEEEeeC
Q 024407 85 KGPQGRINRAVWGP----LN-RTIISAGEDAIVRIWDTETGKLLKES--DKETGHKKTITSLAKAADG----SHFLTGSL 153 (268)
Q Consensus 85 ~~~~~~v~~~~~~~----~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~h~~~v~~v~~s~~~----~~l~s~~~ 153 (268)
.+|+.+|..+.|++ +. ..++++| .+.+.||.....--++-+ ..++.|+..-..++++.+. .++++++.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 46788999999984 22 2445544 467888876643222211 1223466667777777543 46888889
Q ss_pred CCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 154 DKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
-|-|++.|+.++++.+.+. +...++.+.++|....++++++.|. .+..|+.+.....+.+ +.+.+|.+.
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~-svRlwnI~~~~Cv~Vf---------GG~egHrde 183 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDH-SVRLWNIQTDVCVAVF---------GGVEGHRDE 183 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCc-eEEEEeccCCeEEEEe---------cccccccCc
Confidence 9999999999988877764 5678999999998877888877664 5788998887776643 446799999
Q ss_pred eEEEEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 233 INALAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
|.+++|+++|.+|||+|.|.++++|++..+.
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 9999999999999999999999999998543
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=5.6e-13 Score=107.26 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=103.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeee
Q 024407 92 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 171 (268)
Q Consensus 92 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 171 (268)
..++|+++|..+++++.||.+|+|+..+...+.. +..|...|.+++|+|||..|++.+.| ..++|+.+++..++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~---e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE---EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh---hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 5689999999999999999999999766544432 23688999999999999999999999 8999999998655544
Q ss_pred ec---CCceeEEEEccCC---CeEEEeecCCCceEEEeccCCCeeeeEeeehhh-hhhhccccccccceEEEEECCCCCe
Q 024407 172 VT---ERPVNAVTMSPLL---DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGPINALAFNPDGKS 244 (268)
Q Consensus 172 ~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~ 244 (268)
.. +.....+.|..+. ...+++.-.+...+..++ ...|.... ..-...++.+ ..|.+++.|+||++
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~-------~~~w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD-------ISLWSGSNFLRLRKKIKRF-KSISSLAVSDDGKF 295 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEE-------eeeeccccccchhhhhhcc-CcceeEEEcCCCcE
Confidence 31 1222333443322 122222222222233222 22222200 0001112223 46999999999999
Q ss_pred EEeeeCCCeEEEEee
Q 024407 245 FSSGGEDGYVRLHHF 259 (268)
Q Consensus 245 lasgs~Dg~i~i~~~ 259 (268)
+|.|+.||.|-|+..
T Consensus 296 ~AlGT~dGsVai~~~ 310 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDA 310 (398)
T ss_pred EEEeccCCcEEEEEe
Confidence 999999999988644
No 189
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=6e-12 Score=105.21 Aligned_cols=243 Identities=17% Similarity=0.230 Sum_probs=147.5
Q ss_pred CCCCCE-EEEeecCCcEEEeecCCCcEEEEEecCCCc-eeeeeec-CCeEEEEEcCCCcccccceEe---eeeee-----
Q 024407 3 QANSMT-LITGSADQTAKLWNVETGAQLFTFNFDSPA-RSVDFAV-GDKLAVITTDPFMELNSAIHV---KRIAR----- 71 (268)
Q Consensus 3 s~d~~~-l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~----- 71 (268)
||||++ ++||-+--.||+||+....+.+.-..+..+ .-..++. -.+.+.+.++.++........ .++++
T Consensus 60 s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm 139 (703)
T KOG2321|consen 60 SPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDM 139 (703)
T ss_pred cCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCccc
Confidence 789998 677888899999999876543322222222 1111111 123333333333222211100 01100
Q ss_pred --C-----------------CCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccc---c
Q 024407 72 --D-----------------PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK---E 129 (268)
Q Consensus 72 --~-----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~ 129 (268)
+ .+.+.|.-+.-+.-..++++++..++....|++|+.+|.|.+||.++...+..+.. .
T Consensus 140 ~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v 219 (703)
T KOG2321|consen 140 KYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV 219 (703)
T ss_pred cccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccccc
Confidence 0 00111222222333457889999999999999999999999999998665544332 1
Q ss_pred cCcccc-----eEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee--cCCceeEEEEccCCCe-EEEeecCCCceEE
Q 024407 130 TGHKKT-----ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDH-VVLGGGQDASAVT 201 (268)
Q Consensus 130 ~~h~~~-----v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~ 201 (268)
..|+.. |+++.|+.+|-.+++|+.+|.+.|||+|+.+.+..-. .+.++..+.|.+.+.. .+++ -+...+.
T Consensus 220 ~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S--~Dk~~~k 297 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS--MDKRILK 297 (703)
T ss_pred CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe--cchHHhh
Confidence 234443 9999999999999999999999999999877654433 3457777888665322 2221 2233444
Q ss_pred EeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 202 TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 202 ~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.||...|.- ...+. .+..++.+++-|++..+.++-.++.+.-|.++
T Consensus 298 iWd~~~Gk~------------~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 298 IWDECTGKP------------MASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred hcccccCCc------------eeecc-ccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 555444432 22221 23458899999999999999988888766543
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.1e-11 Score=106.48 Aligned_cols=213 Identities=14% Similarity=0.141 Sum_probs=128.0
Q ss_pred CCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEE
Q 024407 15 DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 94 (268)
Q Consensus 15 D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 94 (268)
+.+|.+||...........+..++....|+|++..++..+... -...+.++++... ....+..+++|. ..+
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg----~~~~l~~~~g~~---~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSG----ARKVVASFRGHN---GAP 253 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCC----ceEEEecCCCcc---Cce
Confidence 5799999986554333334566788999999776555443210 1122333333211 111233334443 468
Q ss_pred EEcCCCCEEEEEe-CCCcEEEE--ECCCCceeeecccccCcccceEEEEEcCCCCEEEEee-CCCcEEEEECCCc-ceee
Q 024407 95 VWGPLNRTIISAG-EDAIVRIW--DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTL-ELIK 169 (268)
Q Consensus 95 ~~~~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~iwd~~~~-~~~~ 169 (268)
.|+|||++|+.++ .+|.+.+| |+.+++.. .+ ..+...+....|+|||..|+.++ .++...+|++... ....
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~l---t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QL---TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCeE-ee---ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 9999999887764 68876655 66655432 22 23556678899999999877554 5788888876532 1112
Q ss_pred eeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeee
Q 024407 170 TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 249 (268)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs 249 (268)
.+... . ....++|++..+++.+. + .+..+|...+..... . ..+ ...++.|+|||++|+.++
T Consensus 330 ~l~~~-~-~~~~~SpDG~~ia~~~~-~--~i~~~Dl~~g~~~~l--t----------~~~--~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 330 LVGGR-G-YSAQISADGKTLVMING-D--NVVKQDLTSGSTEVL--S----------STF--LDESPSISPNGIMIIYSS 390 (429)
T ss_pred EecCC-C-CCccCCCCCCEEEEEcC-C--CEEEEECCCCCeEEe--c----------CCC--CCCCceECCCCCEEEEEE
Confidence 22111 1 34678999888776654 2 234456555443211 0 011 124578999999999999
Q ss_pred CCCeEEEEee
Q 024407 250 EDGYVRLHHF 259 (268)
Q Consensus 250 ~Dg~i~i~~~ 259 (268)
.+|.+++|++
T Consensus 391 ~~g~~~~l~~ 400 (429)
T PRK01742 391 TQGLGKVLQL 400 (429)
T ss_pred cCCCceEEEE
Confidence 9998887765
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.48 E-value=2.2e-13 Score=108.85 Aligned_cols=121 Identities=22% Similarity=0.366 Sum_probs=94.1
Q ss_pred EecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeee----cccccCcccceEEEEEcCC-CCEEEEeeCCCcE
Q 024407 84 LKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKE----SDKETGHKKTITSLAKAAD-GSHFLTGSLDKSA 157 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i 157 (268)
+.||+++|.+++|+|.. ..|+|||.|.+|.||+...+...+. .....+|+..|--|+|+|. .+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 57999999999999965 6789999999999999876543322 2234689999999999984 5688999999999
Q ss_pred EEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 158 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
.+|++.+++.+-++. |..-|.++.
T Consensus 157 ~iWnv~tgeali~l~--------------------------------------------------------hpd~i~S~s 180 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD--------------------------------------------------------HPDMVYSMS 180 (472)
T ss_pred EEEeccCCceeeecC--------------------------------------------------------CCCeEEEEE
Confidence 999998876533322 455677777
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeC
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
|+.||.+|+|++.|..||||+-+
T Consensus 181 fn~dGs~l~TtckDKkvRv~dpr 203 (472)
T KOG0303|consen 181 FNRDGSLLCTTCKDKKVRVIDPR 203 (472)
T ss_pred eccCCceeeeecccceeEEEcCC
Confidence 77777777777777777777654
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.6e-12 Score=106.89 Aligned_cols=209 Identities=20% Similarity=0.264 Sum_probs=132.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+.||.+|+|||.|-.+.+||....+++..+.
T Consensus 58 Wn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~------------------------------------------------ 89 (758)
T KOG1310|consen 58 WNADGELLASGSDDTRLIVWDPFEYKLLHSIS------------------------------------------------ 89 (758)
T ss_pred ecCCCCEEeecCCcceEEeecchhcceeeeee------------------------------------------------
Confidence 88999999999999999999987655544331
Q ss_pred EEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce-------eeecccccCcccceEEEEEcCCC-CEEEEe
Q 024407 82 LILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKL-------LKESDKETGHKKTITSLAKAADG-SHFLTG 151 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~ 151 (268)
.||...|.++.|-|- .+.+++|..|..|+++|+...+- ........+|...|..++..|++ +.+.+|
T Consensus 90 ---TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa 166 (758)
T KOG1310|consen 90 ---TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA 166 (758)
T ss_pred ---cccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe
Confidence 268888888888884 46889999999999999985211 11222234688999999999988 678899
Q ss_pred eCCCcEEEEECCCcc-e------eeee--ecC--CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeee------Ee
Q 024407 152 SLDKSAKLWDARTLE-L------IKTY--VTE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA------KF 214 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~-~------~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~------~~ 214 (268)
+.||+|+=+|+|..- | ...+ +.. -...++..+|...+.++.++.+-. ...+|.|...-.. ..
T Consensus 167 sEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~ 245 (758)
T KOG1310|consen 167 SEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNT 245 (758)
T ss_pred cCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccC
Confidence 999999999998621 1 0000 011 135678889988877777665532 2344422100000 00
Q ss_pred eehhhhhhhc--------cccc----cccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 215 FDKILQEEIG--------GVKG----HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 215 ~~~~~~~~~~--------~~~~----h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
-+.....+++ ..++ ....++.+.|+|+|..|...=..-.|.+|++..+
T Consensus 246 ~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 246 CPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred CCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 0000000011 0111 1123677899999977554333447888877654
No 193
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1e-11 Score=99.31 Aligned_cols=159 Identities=21% Similarity=0.332 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCE-EEEEeCC--CcEEEEECCCCceeeeccccc------CcccceEEEEEcCC--CCEEEEeeCCCcEEE
Q 024407 91 INRAVWGPLNRT-IISAGED--AIVRIWDTETGKLLKESDKET------GHKKTITSLAKAAD--GSHFLTGSLDKSAKL 159 (268)
Q Consensus 91 v~~~~~~~~~~~-l~s~~~d--g~i~iwd~~~~~~~~~~~~~~------~h~~~v~~v~~s~~--~~~l~s~~~d~~i~i 159 (268)
+..+.-+|...+ +++||.. +.+++||+++.+.+.+.+... .-+-+++++.|-+. ...|++++.-+.+++
T Consensus 151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~ 230 (412)
T KOG3881|consen 151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRL 230 (412)
T ss_pred eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEE
Confidence 344444454444 4568999 899999999886665433221 22455678889887 889999999999999
Q ss_pred EECCCcc-eeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 160 WDARTLE-LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 160 wd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
||.+.++ ++..+. .+.++.++...|.+..+.++ .-.+.+...|.+.+...... +++-++.+.++.
T Consensus 231 YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~g--n~~g~l~~FD~r~~kl~g~~-----------~kg~tGsirsih 297 (412)
T KOG3881|consen 231 YDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTG--NTKGQLAKFDLRGGKLLGCG-----------LKGITGSIRSIH 297 (412)
T ss_pred ecCcccCcceeEeccccCcceeeeecCCCcEEEEe--cccchhheecccCceeeccc-----------cCCccCCcceEE
Confidence 9998653 444443 46788999999987665554 33345667777766654332 345667899999
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+|.++++|+||.|.++|||+.+..
T Consensus 298 ~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 298 CHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred EcCCCceEEeeccceeEEEeecccc
Confidence 9999999999999999999998863
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=1.6e-13 Score=118.97 Aligned_cols=230 Identities=21% Similarity=0.366 Sum_probs=153.8
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|...|.+++|||.|..+|+|..++..+...++ |.+.+..+++.....+..+++ -+..+++|++. .+.+
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS-----~D~vIrvWrl~------~~~p 266 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS-----NDKVIRVWRLP------DGAP 266 (1113)
T ss_pred eccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc-----cCceEEEEecC------CCch
Confidence 66788999999999999999999988888776 566777777765554433332 24567777764 4678
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeec---c------------------------------
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES---D------------------------------ 127 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~------------------------------ 127 (268)
+.+|.||++.|++++|+|- .+.+.||++++||.+-...+... .
T Consensus 267 vsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n 342 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARN 342 (1113)
T ss_pred HHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccccc
Confidence 8899999999999999994 37789999999998711100000 0
Q ss_pred ----cccCcccceEEEEEcCCC-CEEEEeeCCCcEEEEECCCcceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEE
Q 024407 128 ----KETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVT 201 (268)
Q Consensus 128 ----~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 201 (268)
....+...+.-+..+.+. .+.+++-.+..+.+|++-++..+..+ .+......+.++|....+.+..|.++.. .
T Consensus 343 ~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst-~ 421 (1113)
T KOG0644|consen 343 HEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST-I 421 (1113)
T ss_pred chhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce-E
Confidence 000111111112122221 34455556667778888777554433 2455788899999999999888888754 4
Q ss_pred EeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 202 TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 202 ~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
.||...|.-..+++ .+| ..+..-+||+||..++....-|.+.|...
T Consensus 422 iwdi~eg~pik~y~-----------~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 422 IWDIWEGIPIKHYF-----------IGH-GKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred eeecccCCcceeee-----------ccc-ceeeccccCCCCceEecCCCCCceEEecc
Confidence 56655444332222 234 35678899999999988777788887644
No 195
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.47 E-value=1.1e-12 Score=99.88 Aligned_cols=145 Identities=16% Similarity=0.246 Sum_probs=97.6
Q ss_pred EEEEeecCCcEEEeecCCCcEEEEEe-----------cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 8 TLITGSADQTAKLWNVETGAQLFTFN-----------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 8 ~l~s~s~D~tv~~wd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
+|+.|-.+|.|-+||+.++..+..+. +..++.++++.+.-...+.++ -...+..+.+.+.....
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg-----a~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG-----ADDKLVMYSLNHSTGSL 241 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC-----ccccceeeeeccccCcc
Confidence 47788889999999999875443322 456666666653211111111 11122222222211000
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
+ ....+.-.+..|..+.+-||++.++|+|+|+.||+|..++.++...+. -|++.|++++|+|+.+.+++++.|.+
T Consensus 242 q--~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk---yHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 242 Q--IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK---YHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred c--ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh---hhhcceeEEEeCCCCchhhhccCCce
Confidence 0 001122234457778889999999999999999999999988877664 59999999999999999999999999
Q ss_pred EEEEEC
Q 024407 157 AKLWDA 162 (268)
Q Consensus 157 i~iwd~ 162 (268)
|.+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 196
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.46 E-value=8.3e-12 Score=96.36 Aligned_cols=195 Identities=17% Similarity=0.158 Sum_probs=125.6
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
|-+++.|+|-|-|..+||++++.... . .. -|
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~-v-----------------------------------------------kT-QL 192 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGT-V-----------------------------------------------KT-QL 192 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccc-e-----------------------------------------------ee-EE
Confidence 55789999999999999998761100 0 00 13
Q ss_pred ecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc-CCCCEEEEeeCCC-cEEEEE
Q 024407 85 KGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFLTGSLDK-SAKLWD 161 (268)
Q Consensus 85 ~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~~~l~s~~~d~-~i~iwd 161 (268)
-+|.++|.++.|...+ +.|+++|.||++||||++.-..-..+-....-..+...+++. +|.+++++-..|. .|.|-|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 3688999999999876 578999999999999998744322222222224567777777 4677888877665 599999
Q ss_pred CCCcc-eeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 162 ARTLE-LIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 162 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
+|... .+..+ .+...+++++|.|.....++++|++..+ -.||...-..+ ...+.. -.+. -...|+.+.|+
T Consensus 273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa-liWDl~q~~~~-~~~dPi-----lay~-a~~EVNqi~Ws 344 (364)
T KOG0290|consen 273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA-LIWDLQQMPRE-NGEDPI-----LAYT-AGGEVNQIQWS 344 (364)
T ss_pred ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE-EEEeccccccc-CCCCch-----hhhh-ccceeeeeeec
Confidence 99642 22333 4667899999999877777777776543 34554321110 001110 0111 12469999999
Q ss_pred C-CCCeEEeeeCCCeEEEE
Q 024407 240 P-DGKSFSSGGEDGYVRLH 257 (268)
Q Consensus 240 p-~~~~lasgs~Dg~i~i~ 257 (268)
| ...+|+.+.. ..+.|-
T Consensus 345 ~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 345 SSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred ccCCCEEEEEec-CeeeEE
Confidence 6 5678887764 444443
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=8.6e-13 Score=108.12 Aligned_cols=251 Identities=18% Similarity=0.253 Sum_probs=159.2
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe--cCCCceeeeeecC--CeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
.|...|..|+|||.|..|-+||-..++.+..+. |...+....|.|. ....+.++. ++.+.+-.+.. ..
T Consensus 149 ~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~-----dgqvr~s~i~~---t~ 220 (559)
T KOG1334|consen 149 HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR-----DGQVRVSEILE---TG 220 (559)
T ss_pred eecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc-----cCceeeeeecc---cc
Confidence 488999999999999999999998888777765 4455666666662 222222110 11222221111 11
Q ss_pred CCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCccc---ceEEEEEcCCCC-EEEEe
Q 024407 77 GGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAADGS-HFLTG 151 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~-~l~s~ 151 (268)
..+.+..+..|.++|..++.-|+. ..|.++|.|+.+.-.|++++.....+.+...+.. ...+++..|... .++++
T Consensus 221 ~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVg 300 (559)
T KOG1334|consen 221 YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVG 300 (559)
T ss_pred ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccC
Confidence 122244566799999999999987 4788999999999999998765444433333333 567777777544 78999
Q ss_pred eCCCcEEEEECCCcce------eeeee-------cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCC----------
Q 024407 152 SLDKSAKLWDARTLEL------IKTYV-------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG---------- 208 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------- 208 (268)
+.|-.+++||.|+... +.++- ....+.+++++..+..++++-.+...+++.-+...|
T Consensus 301 G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~ 380 (559)
T KOG1334|consen 301 GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPRE 380 (559)
T ss_pred ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchh
Confidence 9999999999886422 12211 123466677765544444433322222221111111
Q ss_pred ee----------------------------------eeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeE
Q 024407 209 KF----------------------------------EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV 254 (268)
Q Consensus 209 ~~----------------------------------~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i 254 (268)
.+ .+-+|++...+.++-+.+-...|+||.=+|.-..|||.|-|..|
T Consensus 381 ~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DV 460 (559)
T KOG1334|consen 381 QYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDV 460 (559)
T ss_pred hccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccce
Confidence 00 11234444455555566666689999999999999999999999
Q ss_pred EEEee
Q 024407 255 RLHHF 259 (268)
Q Consensus 255 ~i~~~ 259 (268)
+||.=
T Consensus 461 KIWTP 465 (559)
T KOG1334|consen 461 KIWTP 465 (559)
T ss_pred eeecC
Confidence 99964
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.46 E-value=9.7e-13 Score=111.77 Aligned_cols=151 Identities=24% Similarity=0.403 Sum_probs=112.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceee
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 169 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 169 (268)
.|++++|-|||..++.+ .+..+.+||...|.....+ .+|...|.+|+++.||+.+++++.|..|.+|..+- +-+.
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtL---KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPL---KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGIL 88 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCccccccc---ccccceEEEEEEccCCceeccCCCceeEEEecccc-ccee
Confidence 68899999999887765 4456899999998765544 58999999999999999999999999999998753 3344
Q ss_pred eeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeee
Q 024407 170 TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 249 (268)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs 249 (268)
++.+...+.++.|+|....++.++-.+-+ +|... ...+.+. .-+..|.+++|..||+|||-|-
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLsdFg---------------lWS~~-qK~V~K~-kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLSDFG---------------LWSPE-QKSVSKH-KSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchhhcc---------------ccChh-hhhHHhh-hhheeEEEeeecCCCcEEEEec
Confidence 56788899999999986555555433321 22211 1111111 1235689999999999999999
Q ss_pred CCCeEEEEeeCCC
Q 024407 250 EDGYVRLHHFDPD 262 (268)
Q Consensus 250 ~Dg~i~i~~~~~~ 262 (268)
.||+|.|-+-.+|
T Consensus 152 ~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 152 FNGTISIRNKNGE 164 (1081)
T ss_pred cCceEEeecCCCC
Confidence 9999998544333
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.46 E-value=1.8e-13 Score=111.43 Aligned_cols=236 Identities=21% Similarity=0.318 Sum_probs=154.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCc--------ccccc---eEeeeee
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM--------ELNSA---IHVKRIA 70 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~ 70 (268)
|+.+|+.|+-|+.-|.|...|-.++++...+...+.++.+.|-...++.+++-..+. .+.+. ..+.++.
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rLe 216 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARLE 216 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhhc
Confidence 567899999999999999999999988888877777777776554443333322211 11110 0000000
Q ss_pred ---eC--------------CCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcc
Q 024407 71 ---RD--------------PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK 133 (268)
Q Consensus 71 ---~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 133 (268)
.+ ..-..|+.+..+....+++..+..+|-...+-+|...|+|-+|......++..+- +|.
T Consensus 217 FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL---cH~ 293 (545)
T KOG1272|consen 217 FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL---CHR 293 (545)
T ss_pred ccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH---hcC
Confidence 00 0012345555566667778888888988888899999999999988776655443 699
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeE
Q 024407 134 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK 213 (268)
Q Consensus 134 ~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 213 (268)
++|.++++.++|.|++|++.|..++|||+|+...+.++..+.+...++++.- ..++++-.+ .+..|......-
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqk--glLA~~~G~--~v~iw~d~~~~s--- 366 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQK--GLLALSYGD--HVQIWKDALKGS--- 366 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccc--cceeeecCC--eeeeehhhhcCC---
Confidence 9999999999999999999999999999999887777776677788888764 334333222 233332111100
Q ss_pred eeehhhhhhhcccccc--ccceEEEEECCCCCeEEeeeCCCe
Q 024407 214 FFDKILQEEIGGVKGH--FGPINALAFNPDGKSFSSGGEDGY 253 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~lasgs~Dg~ 253 (268)
+.....+-.| ..+|..+.|.|-...|-.|-.-|.
T Consensus 367 ------~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 367 ------GHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ------CCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 0000001122 247888999987666655555443
No 200
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=9.1e-12 Score=104.60 Aligned_cols=165 Identities=19% Similarity=0.263 Sum_probs=108.8
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC------------
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG------------ 145 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~------------ 145 (268)
..+...++||++.|.++...|.|.+|++|+.||+||||.+.++++++.... .+.|.+|+|.|.+
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEecCCCCceeEEEEecCc
Confidence 355677899999999999999999999999999999999999888765432 2345555555544
Q ss_pred --------------------------------------------------------------------CEEEEeeCC---
Q 024407 146 --------------------------------------------------------------------SHFLTGSLD--- 154 (268)
Q Consensus 146 --------------------------------------------------------------------~~l~s~~~d--- 154 (268)
.||++...+
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 333332221
Q ss_pred CcEEEEECCCcceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 155 KSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
..|.|+++........+ .....+.++.|+|...+++++.-.. .+.|+....+-+.++......|
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~---------------vRiYdL~kqelvKkL~tg~kwi 610 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS---------------VRIYDLSKQELVKKLLTGSKWI 610 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccc---------------eEEEehhHHHHHHHHhcCCeee
Confidence 12333333222111111 1123467778888776666654221 2234443344444455556689
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
..++.+|.|..|+.|+.|+.+-.|+++=
T Consensus 611 S~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 611 SSMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred eeeeecCCCCeEEEecCCCeeEEEEccc
Confidence 9999999999999999999998888764
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=6.1e-13 Score=110.60 Aligned_cols=173 Identities=21% Similarity=0.287 Sum_probs=122.0
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC--CCEEEEeeCCCcEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAK 158 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~ 158 (268)
...|.||++-|+++.|+.+|..|++||.|-.+.|||.-..|.+..+. .+|.+-|.++.|-|. ...+++|+.|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 34578999999999999999999999999999999998777776664 589999999999984 45789999999999
Q ss_pred EEECCCccee----------eeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccc
Q 024407 159 LWDARTLELI----------KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 227 (268)
Q Consensus 159 iwd~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 227 (268)
+||+...+.- ..+. +-..+..++-.|.+...+.+++.++. +...|.|....-..- ..-+..+..+.
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~--~~~~~~l~ny~ 197 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPD--EDCPSILVNYN 197 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCcc--ccccHHHHHhc
Confidence 9999852210 0000 12345566667777777777776654 455555542221100 00111222222
Q ss_pred ccccceEEEEECCCC-CeEEeeeCCCeEEEEe
Q 024407 228 GHFGPINALAFNPDG-KSFSSGGEDGYVRLHH 258 (268)
Q Consensus 228 ~h~~~v~~~~~sp~~-~~lasgs~Dg~i~i~~ 258 (268)
...-...|+..+|.. .+||.|+.|-+.|+|+
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 333346789999966 5699999999999987
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.44 E-value=3e-13 Score=112.00 Aligned_cols=87 Identities=25% Similarity=0.449 Sum_probs=70.9
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
.|||||++||+-|.||.+||+|..+.+++-..
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m------------------------------------------------ 328 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQELLGVM------------------------------------------------ 328 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHHHHHH------------------------------------------------
Confidence 48999999999999999999997655432111
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 142 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s 142 (268)
+---+...|++|+|||++|++||.|..|.||.+..++.+..- .+|+++|..|+|.
T Consensus 329 ----kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG---qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 329 ----KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG---QGHKSWVSVVAFD 383 (636)
T ss_pred ----HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec---cccccceeeEeec
Confidence 112345688999999999999999999999999998887643 4899999999998
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.43 E-value=5.7e-12 Score=104.57 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=82.2
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
.++..+.-.++.|+..+|+|||++|++.++||.+||+|..+.+.+..++ ..=....|++|||||+++++++.|.-|.
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk---SYFGGLLCvcWSPDGKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK---SYFGGLLCVCWSPDGKYIVTGGEDDLVT 357 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH---hhccceEEEEEcCCccEEEecCCcceEE
Confidence 3444444456689999999999999999999999999999876654443 2335789999999999999999999999
Q ss_pred EEECCCcceeee-eecCCceeEEEEcc
Q 024407 159 LWDARTLELIKT-YVTERPVNAVTMSP 184 (268)
Q Consensus 159 iwd~~~~~~~~~-~~~~~~~~~~~~~~ 184 (268)
+|.+...+++.. ..+..-+..++|.|
T Consensus 358 VwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 358 VWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEeccceEEEeccccccceeeEeecc
Confidence 999988777665 23444577788876
No 204
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.43 E-value=5.9e-12 Score=107.85 Aligned_cols=185 Identities=17% Similarity=0.209 Sum_probs=135.7
Q ss_pred CEEEEeecCCcEEEeecCC-CcEEEEEe-cCCCceeeeeecCC-eEEEEEcC-CCcccccceEeeeeeeCCCCCCCceEE
Q 024407 7 MTLITGSADQTAKLWNVET-GAQLFTFN-FDSPARSVDFAVGD-KLAVITTD-PFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
++|||||.|.-|.++|+.. ..++.++. |...|..+.|.-.+ +.-+.++. ....++...+ . .....
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~q------k-----~~~g~ 585 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQ------K-----ASSGR 585 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhc------c-----ccCce
Confidence 5799999999999999864 44444544 56778888887533 33333332 1111221111 0 00011
Q ss_pred EEe-cC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 83 ILK-GP----QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 83 ~~~-~~----~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.+. +| ...++++...|..++++++++|..|+|||..+++..+.++...+|......+...|.|.|+++.+.|+++
T Consensus 586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl 665 (1080)
T KOG1408|consen 586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL 665 (1080)
T ss_pred eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce
Confidence 111 11 2457899999999999999999999999999999988887666787888899999999999999999999
Q ss_pred EEEECCCcceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEec
Q 024407 158 KLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 204 (268)
Q Consensus 158 ~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 204 (268)
.++|.-+++++... .+...+..+.|.++.++++..+|++. |+.|.
T Consensus 666 ~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC--IFvW~ 711 (1080)
T KOG1408|consen 666 CFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC--IFVWK 711 (1080)
T ss_pred EEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce--EEEEE
Confidence 99999999998765 46667899999999888887777654 44443
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.42 E-value=4.7e-11 Score=103.17 Aligned_cols=241 Identities=13% Similarity=0.120 Sum_probs=146.6
Q ss_pred CCCEEEEeecCCcEEEeecCCCcE--EEEE-----ecCCCceeeeeec---CCeEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQ--LFTF-----NFDSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~--~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
+..+||.|..+|.|-+||+..+.. ...+ .|..++..+.|-. +..++.+++|+.+.. |++.....
T Consensus 254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~------W~~~~l~~ 327 (555)
T KOG1587|consen 254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS------WDTDMLSL 327 (555)
T ss_pred CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee------eecccccc
Confidence 455799999999999999977654 2111 2445555555543 233556655554444 33332211
Q ss_pred CCCCceEEEEe------cCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee-----eecccccCcccceEEEEEc
Q 024407 75 DQGGESVLILK------GPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLL-----KESDKETGHKKTITSLAKA 142 (268)
Q Consensus 75 ~~~~~~~~~~~------~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~h~~~v~~v~~s 142 (268)
...+.+..... .....++++.|.|.. ..++.|+.+|.|.--+-...+.. ..+.....|..+|.++.++
T Consensus 328 P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~n 407 (555)
T KOG1587|consen 328 PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRN 407 (555)
T ss_pred chhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecC
Confidence 11111111111 123457889998865 57899999999887332221111 1111224578899999999
Q ss_pred CCCCEEEEeeCCCcEEEEECC-Ccceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh
Q 024407 143 ADGSHFLTGSLDKSAKLWDAR-TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220 (268)
Q Consensus 143 ~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 220 (268)
|=+..++.++.|-+++||... ....+..+. ....+.+++|+|....++++. ++.+.+..||........
T Consensus 408 PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~-d~~G~l~iWDLl~~~~~P-------- 478 (555)
T KOG1587|consen 408 PFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV-DGDGNLDIWDLLQDDEEP-------- 478 (555)
T ss_pred CCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE-cCCCceehhhhhccccCC--------
Confidence 877766655559999999877 333333332 233488999999866555544 444566677654322211
Q ss_pred hhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 221 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 221 ~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+...+-+....+.+.|++.|+.|+.|...|.+.++.+...
T Consensus 479 --v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 479 --VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred --cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 1111122455677889999999999999999999998744
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=6.1e-10 Score=95.55 Aligned_cols=218 Identities=11% Similarity=0.076 Sum_probs=127.7
Q ss_pred cEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc--eEEEEecCCCCeEEE
Q 024407 17 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE--SVLILKGPQGRINRA 94 (268)
Q Consensus 17 tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~ 94 (268)
.|.+||.+.............+....|+|+++.++..+... -...+.++.+ .+++ .+..++++ +..+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl------~~G~~~~l~~~~~~---~~~~ 248 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTL------ANGAVRQVASFPRH---NGAP 248 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC--CCcEEEEEEC------CCCCeEEccCCCCC---cCCe
Confidence 68888887654444444566788899999876554432110 0112222222 1222 22223333 4468
Q ss_pred EEcCCCCEEEEE-eCCC--cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC-Cc--EEEEECCCccee
Q 024407 95 VWGPLNRTIISA-GEDA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KS--AKLWDARTLELI 168 (268)
Q Consensus 95 ~~~~~~~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~~--i~iwd~~~~~~~ 168 (268)
.|+|||++|+.. +.+| .|.+||+.+++... +. .+...+....|+|||+.|+.++.+ +. |..+|+.+++..
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt---~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT---DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc---CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence 999999988754 4455 48899998876532 21 233456788999999988776654 44 444466665442
Q ss_pred eeeecCCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEe
Q 024407 169 KTYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 247 (268)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~las 247 (268)
.............|+|++..+++....+. ..+..+|...+.... +.. ........|+|||++|+.
T Consensus 325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-------------Lt~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 325 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-------------LTD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-------------eCC-CCCCCCceECCCCCEEEE
Confidence 22122223456789999888776654332 345555554443211 111 012345789999999998
Q ss_pred eeCCCe---EEEEeeCCCc
Q 024407 248 GGEDGY---VRLHHFDPDY 263 (268)
Q Consensus 248 gs~Dg~---i~i~~~~~~~ 263 (268)
.+.|+. +.++.+++..
T Consensus 391 ~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred EEcCCCceEEEEEECCCCC
Confidence 888765 5666666553
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=5e-11 Score=95.69 Aligned_cols=152 Identities=16% Similarity=0.229 Sum_probs=100.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecC------CCcEEEEEecC--CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVE------TGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
||.+++.|+||+.|-.+++|+++ +.+++....++ .-|.++.|..+...+..+. -+..+-..++
T Consensus 64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~-----~~~~VI~HDi---- 134 (609)
T KOG4227|consen 64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE-----RWGTVIKHDI---- 134 (609)
T ss_pred eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC-----CcceeEeeec----
Confidence 89999999999999999999974 33455544433 4578888877665544321 1222212222
Q ss_pred CCCCCceEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC-CCEEEE
Q 024407 74 ADQGGESVLIL--KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLT 150 (268)
Q Consensus 74 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s 150 (268)
++.+.+.+. ....+.|+.+..+|..+.|++.+.++.|.+||.+..+....+-+.....+....+-|.|. ...|++
T Consensus 135 --Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 135 --ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred --ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 222222222 223458999999999999999999999999999876522222122223445566778875 446678
Q ss_pred eeCCCcEEEEECCC
Q 024407 151 GSLDKSAKLWDART 164 (268)
Q Consensus 151 ~~~d~~i~iwd~~~ 164 (268)
++..+-+.+||.|.
T Consensus 213 ~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 213 NSETGGPNVFDRRM 226 (609)
T ss_pred ccccCCCCceeecc
Confidence 88888899999875
No 208
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.3e-10 Score=87.74 Aligned_cols=107 Identities=27% Similarity=0.383 Sum_probs=75.6
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccccc------Cc-ccceEEEEEcCCCCEEEEeeCC
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET------GH-KKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~h-~~~v~~v~~s~~~~~l~s~~~d 154 (268)
..++||++-|.++.--.....+++|+.||++|+||.++++.+..+...+ .| ...|.+++.+ ...+++++ .
T Consensus 150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-G 226 (325)
T KOG0649|consen 150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-G 226 (325)
T ss_pred EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-C
Confidence 3456777777776654445678999999999999999999887665331 11 2456666654 44665554 4
Q ss_pred CcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEee
Q 024407 155 KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (268)
..+.+|.+|+.++...+..+.++.-+.|.. +.+++++
T Consensus 227 p~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G 263 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGG 263 (325)
T ss_pred CceeEEeccCCCceEEEecccceeEeeeec--ceEEEec
Confidence 779999999999988888777777777764 4455543
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=3.3e-10 Score=88.65 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=74.7
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAI-VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
...+++|..+|.+++.+-+|..++|+|..|+ |||||.+++..+..+.+. ..++.+.+++|||++.+|+++|.-|+|.|
T Consensus 174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-~d~A~iy~iaFSp~~s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-VDRADIYCIAFSPNSSWLAVSSDKGTLHI 252 (346)
T ss_pred ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-CchheEEEEEeCCCccEEEEEcCCCeEEE
Confidence 4668899999999999999999999999998 789999999998887653 34578999999999999999999999999
Q ss_pred EECCC
Q 024407 160 WDART 164 (268)
Q Consensus 160 wd~~~ 164 (268)
|.++.
T Consensus 253 F~l~~ 257 (346)
T KOG2111|consen 253 FSLRD 257 (346)
T ss_pred EEeec
Confidence 99875
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.8e-10 Score=99.49 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=112.7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cc--eeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET--GK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
.|+-.+++..+||.++++++|-.||.|++|.--. .. ....+. =|...|++++|+++|.+|++|+..+-+.+|.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH---WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH---WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE---ecccccceeEEecCCceEeecccceEEEEEe
Confidence 3566688999999999999999999999995321 10 111121 1778999999999999999999999999999
Q ss_pred CCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEE-eccCCCeeeeEeeehhhhhhhccccccccceEEEEECC
Q 024407 162 ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTT-TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240 (268)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 240 (268)
+.+++....-....++..+.++|+++...+...+....+.. .|.....-.. ......+.. -.+..+-.+-+.++|
T Consensus 280 ~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs-gi~~~~~~~---k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 280 LETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS-GIKPPTPST---KTRPQSLTTGVSIDP 355 (792)
T ss_pred ecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc-CccCCCccc---cccccccceeEEEcC
Confidence 99876211112456788899999888777766655443322 2322111000 000000000 011233456688889
Q ss_pred CCCeEEeeeCCCeEEEEeeCCC
Q 024407 241 DGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 241 ~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
--+.++-.+..|.|++|++-.+
T Consensus 356 r~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 356 RTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred CCCceeecCCCceEEEEecccc
Confidence 7777888899999999987755
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=9.2e-10 Score=94.79 Aligned_cols=220 Identities=10% Similarity=0.061 Sum_probs=129.5
Q ss_pred CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEE
Q 024407 16 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 95 (268)
Q Consensus 16 ~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 95 (268)
..|.+||.+.........+..++....|+|+++.++..+... -...+.++++. ++.. ..+..+.+.+....
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~------~g~~-~~l~~~~g~~~~~~ 252 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLE------TGQR-ELVGNFPGMTFAPR 252 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECC------CCcE-EEeecCCCcccCcE
Confidence 378888886554433345567888999999776544433211 01233333332 2222 23445556677889
Q ss_pred EcCCCCEEE-EEeCCCc--EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-CC--cEEEEECCCcceee
Q 024407 96 WGPLNRTII-SAGEDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIK 169 (268)
Q Consensus 96 ~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~--~i~iwd~~~~~~~~ 169 (268)
|+|||+.|+ +.+.++. |.+||+.+++.. .+ ..+........|+|||..++.++. ++ .|.++|+.+++...
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~L---t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RL---TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCceE-Ec---cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence 999998775 5566655 777798877543 22 234455667899999998887663 33 68888887665433
Q ss_pred eeecCCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEee
Q 024407 170 TYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 248 (268)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasg 248 (268)
............|+|+++.+++...... ..+..+|...+.. +. +. ....+....|+|||+.|+..
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~-----------lt-~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RI-----------LT-SGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--Ee-----------cc-CCCCCCCCeECCCCCEEEEE
Confidence 2222334556789999988877653322 3344444322211 11 11 11235678999999997765
Q ss_pred eCC-C-----eEEEEeeCCC
Q 024407 249 GED-G-----YVRLHHFDPD 262 (268)
Q Consensus 249 s~D-g-----~i~i~~~~~~ 262 (268)
+.+ + .+.+.++++.
T Consensus 395 ~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 395 RQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EccCCCCCcceEEEEECCCC
Confidence 443 2 3555555543
No 212
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.40 E-value=1e-10 Score=101.21 Aligned_cols=231 Identities=15% Similarity=0.159 Sum_probs=149.0
Q ss_pred CcEEEeecCCC-cEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEE
Q 024407 16 QTAKLWNVETG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 94 (268)
Q Consensus 16 ~tv~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 94 (268)
+.+.+|+++.. ..-..+....++.++.++|-....++++ ..++.+-+|++...........-.....|..+++.+
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG----~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGG----CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEee----ccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 47899999876 5566677788899999999655444432 245666777765542211111112234688899999
Q ss_pred EEcCCCC--EEEEEeCCCcEEEEECCCCceeeeccc---------ccCcccceEEEEEcC-CCCEEEEeeCCCcEEEEEC
Q 024407 95 VWGPLNR--TIISAGEDAIVRIWDTETGKLLKESDK---------ETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 95 ~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iwd~ 162 (268)
.|..+-. -|++++.||.|..|+++.-........ .......+++++|.+ +...++.|+.+|.|.-=+.
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 9976543 489999999999998765322111100 012234688999986 5678999999998876333
Q ss_pred CCcce--------e-eeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 163 RTLEL--------I-KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 163 ~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
...+. + ....+..++.++.++|.+..+++++++-.. ..|..... ...+-.+..+...|
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~v--riWs~~~~-----------~~Pl~~~~~~~~~v 444 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTV--RIWSEDVI-----------ASPLLSLDSSPDYV 444 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeecccee--EeccccCC-----------CCcchhhhhcccee
Confidence 32211 1 112245688999999998888887774332 33322110 00111233466679
Q ss_pred EEEEECCCC-CeEEeeeCCCeEEEEeeCCCc
Q 024407 234 NALAFNPDG-KSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 234 ~~~~~sp~~-~~lasgs~Dg~i~i~~~~~~~ 263 (268)
++++|||-. ..||++..||.|.+|++..+.
T Consensus 445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 999999976 458899999999999998663
No 213
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.9e-12 Score=107.81 Aligned_cols=136 Identities=21% Similarity=0.353 Sum_probs=104.5
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 83 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-----KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.+.-|...|+.+.|+|....|++++.||++++|++... +.+..+....+|..+|.|++++.++.++.+++.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 56678889999999999999999999999999999331 2222222335899999999999999999999999999
Q ss_pred EEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 158 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
+.|++-... .|++.+ |... -...+.||++.|+.++
T Consensus 369 ~~w~~p~n~----------------dp~ds~---------------dp~v--------------l~~~l~Ghtdavw~l~ 403 (577)
T KOG0642|consen 369 RCWNLPPNQ----------------DPDDSY---------------DPSV--------------LSGTLLGHTDAVWLLA 403 (577)
T ss_pred eeeccCCCC----------------Cccccc---------------Ccch--------------hccceeccccceeeee
Confidence 999864110 111111 0000 0123578999999999
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
+|+....|++++.||++|.|..-++.
T Consensus 404 ~s~~~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 404 LSSTKDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ecccccceeeecCCceEEeeccCCcC
Confidence 99998889999999999999877653
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3e-10 Score=97.44 Aligned_cols=212 Identities=10% Similarity=0.080 Sum_probs=124.9
Q ss_pred CCCCCCEEEEee---cCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGS---ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s---~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|||||+.|+..+ .+..+.+||+.+++...............|+|++..++....... ...+.++++ .++
T Consensus 206 wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g--~~~I~~~d~------~tg 277 (429)
T PRK03629 206 WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--SLNLYVMDL------ASG 277 (429)
T ss_pred EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC--CcEEEEEEC------CCC
Confidence 899999988654 345799999988865443334444567889997765554322110 011222222 122
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC-
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGED-AI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD- 154 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d- 154 (268)
+. ..+..+...+....|+|+|+.|+.++.+ +. |..+|+.+++.. .+. .+........|+|||..++..+.+
T Consensus 278 ~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt---~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 278 QI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT---WEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred CE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee---cCCCCccCEEECCCCCEEEEEEccC
Confidence 22 2333344567789999999988776654 44 444566665432 221 122345567899999998876543
Q ss_pred --CcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCc-eEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 155 --KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS-AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 155 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
..|.+||+.+++.. .+..........|+|++..++.++..... .+..++.. +.....+.+|.+
T Consensus 353 g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-------------G~~~~~l~~~~~ 418 (429)
T PRK03629 353 GQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-------------GRFKARLPATDG 418 (429)
T ss_pred CCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-------------CCCeEECccCCC
Confidence 35888999887643 33222223456799998887776654332 22332221 111223455666
Q ss_pred ceEEEEECC
Q 024407 232 PINALAFNP 240 (268)
Q Consensus 232 ~v~~~~~sp 240 (268)
.+...+|+|
T Consensus 419 ~~~~p~Wsp 427 (429)
T PRK03629 419 QVKFPAWSP 427 (429)
T ss_pred CcCCcccCC
Confidence 788888887
No 215
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.38 E-value=2.4e-11 Score=102.95 Aligned_cols=201 Identities=20% Similarity=0.279 Sum_probs=125.3
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
||| +.-+|+|||.|..||+|.+..+.... +. .+
T Consensus 87 FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-LS---------------------------------------------ap 120 (1012)
T KOG1445|consen 87 FSPFADELLATCSRDEPVKIWKLPRGHSQK-LS---------------------------------------------AP 120 (1012)
T ss_pred ccccchhhhhcccCCCeeEEEecCCCcccc-cC---------------------------------------------Cc
Confidence 555 33479999999999999987543211 10 01
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
...+.+.+-.|.++.|+|...-|+..+.-|.+++||+.+++.+..+ .+|...|-+..|+.||..|++++.|..|+||
T Consensus 121 e~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el---~~h~d~vQSa~WseDG~llatscKdkqirif 197 (1012)
T KOG1445|consen 121 EIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVEL---SGHTDKVQSADWSEDGKLLATSCKDKQIRIF 197 (1012)
T ss_pred ceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecc---cCCchhhhccccccCCceEeeecCCcceEEe
Confidence 1112233456788899998877777778899999999998876654 4799999999999999999999999999999
Q ss_pred ECCC-cceeeeeecCCce--eEEEEccCCCeEEEeecCCC---ceEEEeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 161 DART-LELIKTYVTERPV--NAVTMSPLLDHVVLGGGQDA---SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 161 d~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
|+|. .+.++.......+ ..+.|.-+-..++.. |... ..+..||.+ .|..... -.++. .+..|.
T Consensus 198 DPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisT-GF~~~R~reV~~~Dtr-------~f~~p~~--tleld-~stGvL 266 (1012)
T KOG1445|consen 198 DPRASMEPIQTTEGHGGMRDSRVLWAGNWERLIST-GFTTKRIREVRAYDTR-------KFGAPVH--TLELD-SSTGVL 266 (1012)
T ss_pred CCccCCCccccccccccchhheeeeccchhhhhhc-ccchhhheeeeeeecc-------ccCCcce--eEEee-cccceE
Confidence 9996 3455544322111 233443332233332 2221 123334432 2211100 00111 122344
Q ss_pred EEEECCCCCe-EEeeeCCCeEEEEeeCCC
Q 024407 235 ALAFNPDGKS-FSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 235 ~~~~sp~~~~-lasgs~Dg~i~i~~~~~~ 262 (268)
---|.||.+. |.+|-.+.++.++.+.+.
T Consensus 267 iPl~DpDt~llfLaGKG~~~l~~lE~~d~ 295 (1012)
T KOG1445|consen 267 IPLYDPDTRLLFLAGKGTNKLFMLEMQDR 295 (1012)
T ss_pred eeeecCCCceEEEecCCcceEEEEEecCC
Confidence 4568899877 446667788888877755
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=2e-09 Score=84.35 Aligned_cols=231 Identities=14% Similarity=0.205 Sum_probs=146.3
Q ss_pred CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecC--CCCeEE
Q 024407 16 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINR 93 (268)
Q Consensus 16 ~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~ 93 (268)
..|-+||=...+++..+....+|..+.+.++..++++. +.+.++.... ..+.++.+... -+.+++
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~-----n~k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPD-----NPKLLHVIETRSNPKGLCS 141 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEec--------CeEEEEEcCC-----ChhheeeeecccCCCceEe
Confidence 57889997778888899999999999998755444432 2333333321 11223333221 223444
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc-EEEEECCCcceeeee
Q 024407 94 AVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTY 171 (268)
Q Consensus 94 ~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~ 171 (268)
++-+.+...|+.-| .-|.|.|-|+...+.-. .....+|.+.|.+++...+|..+||||..|+ |||||..+++.+..+
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~-p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA-PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCC-ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee
Confidence 44444444555444 66999999997654411 1122479999999999999999999999998 689999999988877
Q ss_pred ec---CCceeEEEEccCCCeEEEeecCCCceEEEecc-C-CCe----------eeeEeeehhhhhhhccccccccceEEE
Q 024407 172 VT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH-R-AGK----------FEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 172 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~-~~~----------~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
.. ...+.+++++|+...+++++..+...+..... . ... +..++++. ...+...+-..++..-+
T Consensus 221 RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S--~wS~~~f~l~~~~~~~~ 298 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSS--EWSFAKFQLPQGTQCII 298 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhccc--ceeEEEEEccCCCcEEE
Confidence 53 34689999999987777766665555543322 1 111 11122221 11111111223456678
Q ss_pred EECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 237 AFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+|..+.+.++..+.||.-+=+.+.++
T Consensus 299 ~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 299 AFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred EecCCCCeEEEEEeCCcEEEEEeccc
Confidence 88877667777788898877777665
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=2.5e-10 Score=87.04 Aligned_cols=100 Identities=19% Similarity=0.332 Sum_probs=79.4
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC---CcEEEEEC
Q 024407 88 QGRINRAVWGPLNRTIISA--GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDA 162 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~i~iwd~ 162 (268)
.++|.++.|+|+|+.|+.. ..++.|.+||++ ++.+..+ +...++.+.|+|+|+++++++.+ |.|.+||.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~-----~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF-----GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee-----cCCCceEEEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 4579999999999987544 467899999997 4444444 24567889999999999998754 56999999
Q ss_pred CCcceeeeeecCCceeEEEEccCCCeEEEeec
Q 024407 163 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 194 (268)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (268)
++.+.+.+..+. .+..++|+|++.+++++..
T Consensus 133 ~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 133 RKKKKISTFEHS-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred CCCEEeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence 998888776554 4788999999998887654
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=5.4e-10 Score=95.90 Aligned_cols=182 Identities=13% Similarity=0.140 Sum_probs=111.5
Q ss_pred CCCCCCCEEEEeecC---CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 1 MFQANSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D---~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
.|||||+.|+..+.+ ..|.+||+.+++...............|+|++..++...+. ....+++.+... +
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~d~~----~ 273 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSR----DGNSQIYTVNAD----G 273 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEcc----CCCceEEEEECC----C
Confidence 389999999887754 35999999988765433344556678899977554433211 122333333211 1
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC--CCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDT--ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
.....+..+........|+|||++|+..+. ++...+|.+ .+++... +.. ........+|+|||++++..+.+
T Consensus 274 -~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~---~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 274 -SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTF---TGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred -CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-Eec---CCCCcCceEECCCCCEEEEEEcc
Confidence 123334444455667899999998876654 456666654 4443221 111 11233457899999999877655
Q ss_pred C---cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCC
Q 024407 155 K---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 196 (268)
Q Consensus 155 ~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (268)
+ .|.+||+.+++.. .+..........|+|++..++.+....
T Consensus 349 ~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 349 GGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecC
Confidence 4 6999999887643 232222335678999988877765433
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.1e-10 Score=96.27 Aligned_cols=179 Identities=12% Similarity=0.091 Sum_probs=110.1
Q ss_pred CCCCCCCEEEEeecC---CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEE-EEcCCCcccccceEeeeeeeCCCCC
Q 024407 1 MFQANSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D---~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
.||||++.|+..+.+ ..|.+||+.+++...............|+|++..++ ..+... ...+.++++ .
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~------~ 280 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG---NPEIYVMDL------G 280 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC---CceEEEEEC------C
Confidence 389999999988744 469999998887654333444555778888765443 332110 112222222 1
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCc--EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
+++ +..+..+........|+|+|++|+.++ .+|. |.++|+.+++... +. .+.......+|+|||..++..+.
T Consensus 281 ~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt---~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 281 SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT---FQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred CCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee---cCCCCccCEEECCCCCEEEEEEC
Confidence 222 233444544556789999999888766 3444 6667776665322 21 12233446899999999887654
Q ss_pred CC---cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeec
Q 024407 154 DK---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 194 (268)
Q Consensus 154 d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (268)
++ .|.+||+.+++.. .+..........|+|++..++....
T Consensus 356 ~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEe
Confidence 33 6999999877643 3333223345689999887776544
No 220
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.32 E-value=3.9e-11 Score=94.30 Aligned_cols=160 Identities=17% Similarity=0.252 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEE-EEeeCCCcEEEEECCCccee
Q 024407 91 INRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELI 168 (268)
Q Consensus 91 v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~ 168 (268)
|..+.|..+..+++++ +.|+.|.+|++....-.+.+. +-++++..+.+||||.++ .+..-|-.|.+|.+.+.+..
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID---EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEec---cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 4445666677777655 688899999999877666664 346788999999999655 56778999999999987654
Q ss_pred eeeecCCceeEEEEccCCCeEEEeecCCCce---E---EEe-----------ccC------CCeeeeEeeehhhhhhhcc
Q 024407 169 KTYVTERPVNAVTMSPLLDHVVLGGGQDASA---V---TTT-----------DHR------AGKFEAKFFDKILQEEIGG 225 (268)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i---~~~-----------d~~------~~~~~~~~~~~~~~~~~~~ 225 (268)
.-......+..++++|++.+..++...|-.. + ..| |.. .|. ..-.|+....-.+
T Consensus 128 ~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~-~laVwd~~Leykv-- 204 (447)
T KOG4497|consen 128 LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN-WLAVWDNVLEYKV-- 204 (447)
T ss_pred EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc-EEEEecchhhhee--
Confidence 3322233457888999988877765433210 0 000 000 011 1112332111111
Q ss_pred ccccc-cceEEEEECCCCCeEEeeeCCCeEEE
Q 024407 226 VKGHF-GPINALAFNPDGKSFSSGGEDGYVRL 256 (268)
Q Consensus 226 ~~~h~-~~v~~~~~sp~~~~lasgs~Dg~i~i 256 (268)
+--|. -.+-.++|+|-+++||.|+-|+++||
T Consensus 205 ~aYe~~lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 205 YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred eeeeeccceeEEEeccccceEEeeccchhhhh
Confidence 11122 35888999999999999999999988
No 221
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=7.1e-11 Score=104.90 Aligned_cols=188 Identities=16% Similarity=0.227 Sum_probs=129.9
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeee---eec-CCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD---FAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
-+.+.++....+..+-+||...+.....+..++...... +-. ....-+.+. ...+.+-+|... ...+
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g----sv~~~iivW~~~-----~dn~ 167 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASG----SVFGEIIVWKPH-----EDNK 167 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEec----cccccEEEEecc-----ccCC
Confidence 456778888888999999998877666665444321111 111 122222222 133444555443 1222
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
+. .+.||.+.+.++.++.+|+++++.|.|.++|+|++++++.... ..-+|++.|+.+.+.+. .++|++.|-+.++
T Consensus 168 p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 168 PI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC--TGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred cc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc--ccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 33 6889999999999999999999999999999999999876541 12379999999999987 9999999999999
Q ss_pred EECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccc-cceEEEEE
Q 024407 160 WDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF-GPINALAF 238 (268)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~ 238 (268)
|+... +.+.. +..|. ..+..++.
T Consensus 243 W~~~~-~~l~~-------------------------------------------------------y~~h~g~~iw~~~~ 266 (967)
T KOG0974|consen 243 WGVNG-TQLEV-------------------------------------------------------YDEHSGKGIWKIAV 266 (967)
T ss_pred Eeccc-ceehh-------------------------------------------------------hhhhhhcceeEEEE
Confidence 95332 11110 11122 34778888
Q ss_pred CCCCCeEEeeeCCCeEEEEeeCC
Q 024407 239 NPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 239 sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
.++...++|++.||.+++|++-+
T Consensus 267 ~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 267 PIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cCCceEEEeeccCcchhhhhhhc
Confidence 88888888999999998887654
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.30 E-value=3.9e-10 Score=88.29 Aligned_cols=217 Identities=13% Similarity=0.198 Sum_probs=140.0
Q ss_pred cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 024407 34 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 113 (268)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 113 (268)
..++|.+.+|.++..+.+++.. ...+++..... ...=++.++++.|...|+.++|+|.+++|++++.|...+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~-----~~evhiy~~~~---~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPN-----NHEVHIYSMLG---ADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred ccCceeeeeecCCCceEEeccC-----CceEEEEEecC---CCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 3567888888876555444332 11223322211 111356788999999999999999999999999999999
Q ss_pred EEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce--ee---eeecCCceeEEEEccCCCe
Q 024407 114 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IK---TYVTERPVNAVTMSPLLDH 188 (268)
Q Consensus 114 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 188 (268)
+|....+...+..-....+...+++|.++|..+.+++++.-..|.+|=+...+- +. +......+.+++|+|+. -
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-V 159 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-V 159 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-c
Confidence 999955433332222235788999999999999999999999998886653210 00 11234467899999974 3
Q ss_pred EEEeecCCCce------EEEeccCCCeeeeEeeeh--hhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 189 VVLGGGQDASA------VTTTDHRAGKFEAKFFDK--ILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 189 ~~~~~~~~~~~------i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
++++++.|... |...|.+. ...-|.. ..++.+.+.....+.|..+.|+|+|.-||=.+.|.++.+=+..
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekp---ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKP---APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred eecccccCcceeEEEEeeeccccCC---CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 34444444332 11112111 0011111 1122222332344789999999999999999999999887766
Q ss_pred CC
Q 024407 261 PD 262 (268)
Q Consensus 261 ~~ 262 (268)
++
T Consensus 237 ~p 238 (361)
T KOG1523|consen 237 GP 238 (361)
T ss_pred CC
Confidence 55
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.29 E-value=8.7e-12 Score=101.80 Aligned_cols=165 Identities=16% Similarity=0.214 Sum_probs=118.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceee
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 169 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 169 (268)
.-+.+.++.+|++++.||..|.+--+|..+++....+.. ...|.++.|..+..++ +++.-..+.+||-. +..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~-AVAQK~y~yvYD~~-GtElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFF-AVAQKKYVYVYDNN-GTELH 204 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHH-HhhhhceEEEecCC-CcEEe
Confidence 346788999999999999999999999999988776642 3456777776554444 44556788899854 34444
Q ss_pred eeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee------------------------------eEeeehhh
Q 024407 170 TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE------------------------------AKFFDKIL 219 (268)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------------------------------~~~~~~~~ 219 (268)
.+.....+..+.|-|.+ +++++..+.+.+...|..+|... ..+|....
T Consensus 205 Clk~~~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 205 CLKRHIRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred ehhhcCchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 55555567777777753 33333444455555554444332 12455555
Q ss_pred hhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 220 ~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+.+..+..|.++|.++++.++|+|.||.|.|..++||+++.=
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc
Confidence 5666677889999999999999999999999999999999853
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=5.3e-09 Score=90.01 Aligned_cols=220 Identities=15% Similarity=0.092 Sum_probs=126.7
Q ss_pred CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEE
Q 024407 16 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 95 (268)
Q Consensus 16 ~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 95 (268)
.+|.+||...............+....|+|++..++..+... -...+.++.+. +++. ..+....+....+.
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~------~g~~-~~l~~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER--GRSAIYVQDLA------TGQR-ELVASFRGINGAPS 254 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC--CCcEEEEEECC------CCCE-EEeccCCCCccCce
Confidence 468999986544433344566788889999776444433211 01122222221 2222 22333334445789
Q ss_pred EcCCCCEEE-EEeCCC--cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-CCc--EEEEECCCcceee
Q 024407 96 WGPLNRTII-SAGEDA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKS--AKLWDARTLELIK 169 (268)
Q Consensus 96 ~~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~--i~iwd~~~~~~~~ 169 (268)
|+|+|+.|+ +.+.+| .|++||+.+++.. .+. .+.......+|+||+..++.++. ++. |.++|+.+++...
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt---~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT---NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 999998775 555555 5999999887643 222 34444567899999998887653 444 6666776665432
Q ss_pred eeecCCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEee
Q 024407 170 TYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 248 (268)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasg 248 (268)
...........+|+|++..+++....+. ..+..+|...+... . +. +........|+|||++|+..
T Consensus 331 lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~------------Lt-~~~~~~~p~~spdG~~i~~~ 396 (433)
T PRK04922 331 LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T------------LT-PGSLDESPSFAPNGSMVLYA 396 (433)
T ss_pred eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-E------------CC-CCCCCCCceECCCCCEEEEE
Confidence 2222233446789999988877654332 24556665443321 1 11 11123457899999987766
Q ss_pred eCC-C--eEEEEeeCCC
Q 024407 249 GED-G--YVRLHHFDPD 262 (268)
Q Consensus 249 s~D-g--~i~i~~~~~~ 262 (268)
+.+ + .|.++..++.
T Consensus 397 s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 397 TREGGRGVLAAVSTDGR 413 (433)
T ss_pred EecCCceEEEEEECCCC
Confidence 653 3 3555555443
No 225
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.25 E-value=6e-12 Score=109.35 Aligned_cols=165 Identities=24% Similarity=0.419 Sum_probs=123.1
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+..|.||-..|+|+.|...|+++++|+.|..++||.++++...... .||...++.++.+.....+++++.|..|++|
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~---rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC---RGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC---CCCccccchhccchhhhhhhhcccCceEEEE
Confidence 3446799999999999999999999999999999999998766554 4899999999999998899999999999999
Q ss_pred ECCCcceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 161 DARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 161 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
.++.+..+..+ .+...+.+++++|.- + +.+.+.+..||.+ +....+.. .+.. .. -..-+.++.|-
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~-----s-ss~dgt~~~wd~r---~~~~~y~p-rp~~---~~-~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA-----S-SSDDGTCRIWDAR---LEPRIYVP-RPLK---FT-EKDLVDSILFE 325 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc-----c-CCCCCceEecccc---ccccccCC-CCCC---cc-cccceeeeecc
Confidence 99998877665 356789999999953 2 2333455666655 11111110 0000 00 11346667777
Q ss_pred CCCCeEEeeeCCCeEEEEeeCCC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+.-++||+.|+.-+.|+++-.
T Consensus 326 ~~~~~f~Tgs~d~ea~n~e~~~l 348 (1113)
T KOG0644|consen 326 NNGDRFLTGSRDGEARNHEFEQL 348 (1113)
T ss_pred ccccccccccCCcccccchhhHh
Confidence 77788888888888888876543
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=3.2e-09 Score=91.43 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=106.3
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEE-EeeCCC
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDK 155 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~ 155 (268)
....+..|...+.+..|+|||+.|+..+. +..|.+||+.+++... +. .+...+...+|+|||..|+ +.+.++
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~---~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG---NFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee---cCCCcccCcEECCCCCEEEEEEecCC
Confidence 34446677888999999999998887653 4689999998876532 21 2445667889999999875 555555
Q ss_pred c--EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCC-CceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 156 S--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 156 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
. |.+||+.+++...............|+|++..+++..... ...++.+|...+.... +..+...
T Consensus 269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-------------lt~~~~~ 335 (435)
T PRK05137 269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-------------ISFGGGR 335 (435)
T ss_pred CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-------------eecCCCc
Confidence 5 7777988776533222233345678999988877665332 2234444433322211 1112234
Q ss_pred eEEEEECCCCCeEEeeeCC-C--eEEEEeeCCC
Q 024407 233 INALAFNPDGKSFSSGGED-G--YVRLHHFDPD 262 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs~D-g--~i~i~~~~~~ 262 (268)
+....|+|||++|+..+.+ + .|.+++.+++
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 5668899999998876643 2 4555665443
No 227
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=1e-08 Score=87.92 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=112.7
Q ss_pred CCCCCCEEEEeecC---CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D---~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
||||++.|+.++.+ ..|++||+.+++...............|+|+++.++....... ...+..+++. ++
T Consensus 197 ~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~--~~~i~~~d~~------~~ 268 (417)
T TIGR02800 197 WSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG--NPDIYVMDLD------GK 268 (417)
T ss_pred CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC--CccEEEEECC------CC
Confidence 89999999887755 4899999998866554445556667888987654443322110 1112222221 11
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
....+..+........|+|+|++|+.++. ++ .|.++|+.+++... +. .+...+....++|++.+++.++.++
T Consensus 269 -~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~---~~~~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 269 -QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT---FRGGYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred -CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee---cCCCCccCeEECCCCCEEEEEEccC
Confidence 22333344444556789999998876654 33 57888887765432 21 1334566788999999999888776
Q ss_pred ---cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCC
Q 024407 156 ---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 196 (268)
Q Consensus 156 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (268)
.|.+||+.++.. ..+..........|+|++..+++....+
T Consensus 344 ~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 344 GGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCC
Confidence 789999987543 2222222234457888887777655443
No 228
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.3e-08 Score=87.32 Aligned_cols=200 Identities=14% Similarity=0.093 Sum_probs=111.0
Q ss_pred CCCCCCCE---EEEeecCCc--EEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 1 MFQANSMT---LITGSADQT--AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 1 ~fs~d~~~---l~s~s~D~t--v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
.|||||+. ++++..++. |.+.++..++...............|+|+++.++...+......-....+.+.. .
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~---g 267 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET---G 267 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc---C
Confidence 38999974 335555554 555688777654444445555667899977554443322111111111111111 0
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEE--CCC-CceeeecccccCcccceEEEEEcCCCCEEEEe
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWD--TET-GKLLKESDKETGHKKTITSLAKAADGSHFLTG 151 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd--~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 151 (268)
..+++.....++........|+|||++|+..+ .+|...+|. +.. +.....+ ..+...+....|+|||+.|+..
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l---t~~~~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL---TKKYRNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe---ccCCCCccceeECCCCCEEEEE
Confidence 11233333333333446789999999887655 566655554 432 2212222 1233456678899999998876
Q ss_pred eCC---CcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCC-CceEEEeccC
Q 024407 152 SLD---KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTTTDHR 206 (268)
Q Consensus 152 ~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~ 206 (268)
+.+ ..|.+||+.+++...............|+|++..+++..... ...+..+|..
T Consensus 345 ~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 543 368999998876543322223456788999988777654332 2344454443
No 229
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=3.5e-09 Score=82.22 Aligned_cols=167 Identities=15% Similarity=0.169 Sum_probs=107.5
Q ss_pred eEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc-eeeecccccCcccceEEEEEc-CCCCEEEEeeCCCc
Q 024407 80 SVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKA-ADGSHFLTGSLDKS 156 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s-~~~~~l~s~~~d~~ 156 (268)
.++.+++|.-+..-+.|+... +.+.+||.|+.+.-||.+..+ .+.. ...-|...|.++..+ |.+.++++|+.|.+
T Consensus 157 ~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 157 KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--cceeeecceEEEecCCCCCceEEEeccccc
Confidence 355678898888888887544 688999999999999999443 2222 123588999999777 46789999999999
Q ss_pred EEEEECCC-cceeeeeecCCceeEEEEccCCCeE-EEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 157 AKLWDART-LELIKTYVTERPVNAVTMSPLLDHV-VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 157 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
|++||.|+ ++++..-.....+..+.++|..... ++++-..+..+.......+.+... +...+.|.+-+.
T Consensus 235 i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~---------~~s~~~hdSl~Y 305 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIV---------LPSDKIHDSLCY 305 (339)
T ss_pred eeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhee---------eeccccccceee
Confidence 99999995 5666555556678899999875432 333333333332222111111111 112334554444
Q ss_pred EEEECCCCCeEEeee-CCCeEE-EE
Q 024407 235 ALAFNPDGKSFSSGG-EDGYVR-LH 257 (268)
Q Consensus 235 ~~~~sp~~~~lasgs-~Dg~i~-i~ 257 (268)
--.|......|||++ -|..++ +|
T Consensus 306 G~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 306 GGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred ccccccccceeeeeeccccceeeee
Confidence 455543345688876 566655 66
No 230
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=4.9e-09 Score=88.28 Aligned_cols=216 Identities=12% Similarity=0.123 Sum_probs=142.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|.|-..+||....||.+|+||..++++-..+...... .+. +....|.+.-+. ..+..
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~------s~t--------------~~~~~w~L~~~~---s~~k~ 57 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL------SGT--------------CTYTKWGLSADY---SPMKW 57 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCceeeeeeccchhc------cCc--------------ceeEEEEEEecc---chHHH
Confidence 4566789999999999999999998876665421110 000 001111111000 00000
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
..+.--+ .-+.+...++-|...|.|.+|++..++.-..+. ..+|...|+++....+-..|.+++.|+.+-.|+
T Consensus 58 ~~~~~~~------~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~s-t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~ 130 (541)
T KOG4547|consen 58 LSLEKAK------KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLS-TDKHYGNVNEILDAQRLGCIYSVGADLKVVYIL 130 (541)
T ss_pred HhHHHHh------hccCCceEEEeecCCccEEEEEecCCeEEEEEe-cCCCCCcceeeecccccCceEecCCceeEEEEe
Confidence 0000000 001223467778899999999999988766554 357999999999888888999999999999999
Q ss_pred CCCcceeeeeec-CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC
Q 024407 162 ARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240 (268)
Q Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 240 (268)
++....+..+.. ...+..++.+|++...++++ ..+..+|...+.+. .+..||.++|.++.|..
T Consensus 131 ~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as----~~ik~~~~~~kevv------------~~ftgh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 131 EKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS----RQIKVLDIETKEVV------------ITFTGHGSPVRTLSFTT 194 (541)
T ss_pred cccceeeeeeccCCCccceEEEcCCCCEEEecc----ceEEEEEccCceEE------------EEecCCCcceEEEEEEE
Confidence 998877776643 34567888999866655543 24566665555543 34578999999999987
Q ss_pred C-----CCeEE-eeeCCCeEEEEeeCCCc
Q 024407 241 D-----GKSFS-SGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 241 ~-----~~~la-sgs~Dg~i~i~~~~~~~ 263 (268)
+ |.++. +...+..|.+|..+.+.
T Consensus 195 ~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 195 LIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred eccccccceeeeccccccceeEEEEEccc
Confidence 6 66755 45567778889888754
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=3.2e-08 Score=85.02 Aligned_cols=210 Identities=13% Similarity=0.139 Sum_probs=116.5
Q ss_pred CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEE
Q 024407 16 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 95 (268)
Q Consensus 16 ~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 95 (268)
..|.+||...............+....|+|++..++..+... -...+.++++. +++.. .+....+.+....
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~------~g~~~-~l~~~~g~~~~~~ 246 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLA------TGRRR-VVANFKGSNSAPA 246 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECC------CCCEE-EeecCCCCccceE
Confidence 456677764333222334566788889999776555443211 11123333332 22222 2333334556789
Q ss_pred EcCCCCEEE-EEeCCCcEEEEE--CCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-CCcEEEEEC--CCcceee
Q 024407 96 WGPLNRTII-SAGEDAIVRIWD--TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDA--RTLELIK 169 (268)
Q Consensus 96 ~~~~~~~l~-s~~~dg~i~iwd--~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~iwd~--~~~~~~~ 169 (268)
|+|||+.|+ +.+.+|...+|. +..+. ...+. .+........|+|||..++..+. ++...+|.+ .+++...
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt---~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT---QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC---CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence 999999876 567788766665 44433 22222 24445566789999998886654 456666654 4443222
Q ss_pred eeecCCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEee
Q 024407 170 TYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 248 (268)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasg 248 (268)
............|+|++..++.....+. ..+..+|...+.... +... .......|+|||++|+..
T Consensus 323 lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-------------lt~~-~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 323 VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-------------LTDT-TRDESPSFAPNGRYILYA 388 (427)
T ss_pred EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-------------ccCC-CCccCceECCCCCEEEEE
Confidence 1112222345689999888776554332 245555554433211 1111 123567999999998877
Q ss_pred eCCC
Q 024407 249 GEDG 252 (268)
Q Consensus 249 s~Dg 252 (268)
+.++
T Consensus 389 ~~~~ 392 (427)
T PRK02889 389 TQQG 392 (427)
T ss_pred EecC
Confidence 6544
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.17 E-value=9e-09 Score=81.25 Aligned_cols=243 Identities=16% Similarity=0.231 Sum_probs=149.0
Q ss_pred CCCCCC-CEEEEeecCCcEEEeecCCCcEEEEEec-CCCceeeeeecCCeEEEEEcCCC------------cccccceEe
Q 024407 1 MFQANS-MTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPF------------MELNSAIHV 66 (268)
Q Consensus 1 ~fs~d~-~~l~s~s~D~tv~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 66 (268)
.||||| .+|.|+.-|-.|.+|.+.+.+... +.+ ..-+..+.|++++++.+..+-.. +.+.+....
T Consensus 98 ~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~ 176 (447)
T KOG4497|consen 98 SWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKL 176 (447)
T ss_pred eECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCC
Confidence 389999 668888999999999998765433 333 44468889999888766654211 011111111
Q ss_pred e--eeee-CCCCCCCceEEEE----------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----------
Q 024407 67 K--RIAR-DPADQGGESVLIL----------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL---------- 123 (268)
Q Consensus 67 ~--~~~~-~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------- 123 (268)
. ++.. ++..+ +.-+.++ -....++..+.|+|.++.|+.|++|+++|+.+--+-+.+
T Consensus 177 dT~DltgieWsPd-g~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~ 255 (447)
T KOG4497|consen 177 DTIDLTGIEWSPD-GNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYH 255 (447)
T ss_pred CcccccCceECCC-CcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhcc
Confidence 0 0000 11111 1111111 112356788999999999999999999998652110000
Q ss_pred --------------------------------------------------eecccc---cCcccceEEEEEcCCCCEEEE
Q 024407 124 --------------------------------------------------KESDKE---TGHKKTITSLAKAADGSHFLT 150 (268)
Q Consensus 124 --------------------------------------------------~~~~~~---~~h~~~v~~v~~s~~~~~l~s 150 (268)
..++.. ..-...+-.++|++|+.++++
T Consensus 256 dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aT 335 (447)
T KOG4497|consen 256 DPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAAT 335 (447)
T ss_pred CchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEee
Confidence 000000 001224667889999998887
Q ss_pred eeC--CCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhc-ccc
Q 024407 151 GSL--DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG-GVK 227 (268)
Q Consensus 151 ~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~ 227 (268)
-.. -+.+=+||+++.+....+....++.+..|+|....++++.|... +..|...- +..++ ..+
T Consensus 336 rnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~sr--LY~W~psg------------~~~V~vP~~ 401 (447)
T KOG4497|consen 336 RNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSR--LYFWAPSG------------PRVVGVPKK 401 (447)
T ss_pred ecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCce--EEEEcCCC------------ceEEecCCC
Confidence 643 34678999999877666666678999999998888888766543 33332221 11111 112
Q ss_pred ccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 228 GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 228 ~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
| -.|..+.|.-+|..++-.+.|.+.-- -++.|
T Consensus 402 G--F~i~~l~W~~~g~~i~l~~kDafc~a-~ve~e 433 (447)
T KOG4497|consen 402 G--FNIQKLQWLQPGEFIVLCGKDAFCVA-IVEDE 433 (447)
T ss_pred C--ceeeeEEecCCCcEEEEEcCCceEEE-EecCC
Confidence 2 35899999999999999999988654 34443
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.16 E-value=1.1e-08 Score=87.62 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=104.5
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEE-EeeCCC--
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDK-- 155 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~-- 155 (268)
..+..+...+....|+|+|++|+.+..+ ..|++||+.+++..... .+...+..++|+||++.|+ +.+.++
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~----~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA----SFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee----cCCCCccceEECCCCCEEEEEECCCCCc
Confidence 3444566678889999999999877644 47999999887543221 2344566789999998776 444444
Q ss_pred cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 156 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 156 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
.|.+||+.+++...............|+|++..++++....+ ..++.++...+... .+..+...+.
T Consensus 259 ~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-------------~l~~~~~~~~ 325 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-------------RLTFRGGYNA 325 (417)
T ss_pred cEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-------------EeecCCCCcc
Confidence 588999987654332222222345678998887776654332 23444444333221 1111223456
Q ss_pred EEEECCCCCeEEeeeCCC---eEEEEeeCCCc
Q 024407 235 ALAFNPDGKSFSSGGEDG---YVRLHHFDPDY 263 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg---~i~i~~~~~~~ 263 (268)
...|+|+|++|+.++.++ .|.+++++...
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 789999999998888775 56666665543
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.16 E-value=6.6e-08 Score=81.07 Aligned_cols=152 Identities=22% Similarity=0.239 Sum_probs=94.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee-CCCcEEEEECCCcceeeeee
Q 024407 94 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 94 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~ 172 (268)
+.|+|||+++++++.||.|.++|+.+.+.+..+.. .....++++++||++++++. .++.+.++|.++.+.++.+.
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 57899999999999999999999999998887753 23456799999999988665 68999999999999888765
Q ss_pred cC--------CceeEEEEccCCCeEEEeecCCCceEEEeccCCCe-eeeEeeehhhhhhhccccccccceEEEEECCCCC
Q 024407 173 TE--------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK-FEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 243 (268)
Q Consensus 173 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 243 (268)
.. ..+.++..+|.....+++- .+...++..|..... ......+ -........|+|+++
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l-kd~~~I~vVdy~d~~~~~~~~i~------------~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNL-KDTGEIWVVDYSDPKNLKVTTIK------------VGRFPHDGGFDPDGR 184 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEE-TTTTEEEEEETTTSSCEEEEEEE--------------TTEEEEEE-TTSS
T ss_pred cccccccccCCCceeEEecCCCCEEEEEE-ccCCeEEEEEeccccccceeeec------------ccccccccccCcccc
Confidence 32 2344565666655444443 333344444433221 1111111 112356789999999
Q ss_pred eEEee-eCCCeEEEEeeCCC
Q 024407 244 SFSSG-GEDGYVRLHHFDPD 262 (268)
Q Consensus 244 ~lasg-s~Dg~i~i~~~~~~ 262 (268)
|++.+ ..+..|-+++....
T Consensus 185 y~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTT
T ss_pred eeeecccccceeEEEeeccc
Confidence 97654 45567777776654
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.7e-09 Score=86.78 Aligned_cols=167 Identities=16% Similarity=0.217 Sum_probs=118.2
Q ss_pred CCEEEEeecC--CcEEEeecCCCcEEEEEec----------CCCceeeeeecC--CeEEEEEcCCCcccccceEeeeeee
Q 024407 6 SMTLITGSAD--QTAKLWNVETGAQLFTFNF----------DSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIAR 71 (268)
Q Consensus 6 ~~~l~s~s~D--~tv~~wd~~~~~~~~~~~~----------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (268)
-.++++||.. .-+++||++..+++++-+. +-.+..+.|-++ ...++..+ -...++.++..
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-----~~hqvR~YDt~- 234 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-----RYHQVRLYDTR- 234 (412)
T ss_pred CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-----cceeEEEecCc-
Confidence 3457779998 8999999998877665331 111334445554 32222221 11122222211
Q ss_pred CCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEe
Q 024407 72 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 151 (268)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 151 (268)
-+..|+..+.--..+++++...|.++.+++|-.-+.+..+|.+.++..... ..+..+.+.++.++|.+.+++++
T Consensus 235 ----~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~--~kg~tGsirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 235 ----HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG--LKGITGSIRSIHCHPTHPVLASC 308 (412)
T ss_pred ----ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc--cCCccCCcceEEEcCCCceEEee
Confidence 234566666656778999999999999999999999999999998876541 23677889999999999999999
Q ss_pred eCCCcEEEEECCCcceeeeeecCCceeEEEEcc
Q 024407 152 SLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 184 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 184 (268)
+.|..|||+|.++.+.+...+.....+.+.+.+
T Consensus 309 GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~ 341 (412)
T KOG3881|consen 309 GLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRD 341 (412)
T ss_pred ccceeEEEeecccchhhhhhhhhccccEEEecC
Confidence 999999999999977777766666666666654
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.15 E-value=2.1e-07 Score=77.76 Aligned_cols=245 Identities=16% Similarity=0.184 Sum_probs=139.1
Q ss_pred CCCCCCEEEEeec----CCcEEEeecCCC--cE--EEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeC
Q 024407 2 FQANSMTLITGSA----DQTAKLWNVETG--AQ--LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 72 (268)
Q Consensus 2 fs~d~~~l~s~s~----D~tv~~wd~~~~--~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (268)
++|++++|++... ++.|..|.+... ++ +.... .......+.+.+.+..+++++-. .+.+.+..+...
T Consensus 44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~----~g~v~v~~l~~~ 119 (345)
T PF10282_consen 44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG----GGSVSVFPLDDD 119 (345)
T ss_dssp E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT----TTEEEEEEECTT
T ss_pred EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc----CCeEEEEEccCC
Confidence 6889999999988 479999988764 32 33333 23445677777877777776532 122222222110
Q ss_pred CCCCCCceEEEEe----------cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc--eeeecccccCcccceEEE
Q 024407 73 PADQGGESVLILK----------GPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGK--LLKESDKETGHKKTITSL 139 (268)
Q Consensus 73 ~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~v 139 (268)
. .-......+. .......++.++|+++++++.. ....|++|++.... ..............-..+
T Consensus 120 g--~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 120 G--SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp S--EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred c--ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 0 0001111111 1123467899999999887653 45679999997754 221110011223456789
Q ss_pred EEcCCCCEEEE-eeCCCcEEEEECC--Cc--ceeeeee---c----CCceeEEEEccCCCeEEEeec-CCCceEEEeccC
Q 024407 140 AKAADGSHFLT-GSLDKSAKLWDAR--TL--ELIKTYV---T----ERPVNAVTMSPLLDHVVLGGG-QDASAVTTTDHR 206 (268)
Q Consensus 140 ~~s~~~~~l~s-~~~d~~i~iwd~~--~~--~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~d~~ 206 (268)
+|+|++.++.. .-.+++|.++++. .+ +.++... . ......+.++|++.++.++.. .+...+...|..
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 99999998754 4568889999988 33 2222221 1 124678899999887776543 333334444444
Q ss_pred CCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeee-CCCeEEEEeeCCC
Q 024407 207 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFDPD 262 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs-~Dg~i~i~~~~~~ 262 (268)
.+.+..... ....-..-..++++|+|++|+.+. .++.|.+|+++.+
T Consensus 278 ~g~l~~~~~----------~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 278 TGTLTLVQT----------VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp TTTEEEEEE----------EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCceEEEEE----------EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 444332111 111112256899999999988776 5678999998765
No 237
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.14 E-value=2.8e-09 Score=96.59 Aligned_cols=174 Identities=13% Similarity=0.215 Sum_probs=109.9
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC--c--eeeecccccCcccceEEEEEcCCCCEEEE
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETG--K--LLKESDKETGHKKTITSLAKAADGSHFLT 150 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~--~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s 150 (268)
..|..+..+..|...+..++.++.. .+|+|||.||+||+||++.- . ..+.........+++.++...+.+..+|.
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 3467777788899999888877655 89999999999999998751 1 11111111123567888888899999999
Q ss_pred eeCCCcEEEEECCCcceeeee---------ecCCceeEE-EEccCCCe-EEEeecCCCceEEEeccCCCeeeeEeeehhh
Q 024407 151 GSLDKSAKLWDARTLELIKTY---------VTERPVNAV-TMSPLLDH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219 (268)
Q Consensus 151 ~~~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 219 (268)
++.||.|++.++.-.+..+.. ..+..+..+ ++...... .++. ......+..||.+...- .|.
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~---~w~--- 1188 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHD---AWR--- 1188 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhh---HHh---
Confidence 999999999998752111110 111111111 11111111 2222 23333455566543221 111
Q ss_pred hhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 220 ~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+. .+-..+.|++++.+|-+.++++|..-|.+-+|+++
T Consensus 1189 ---lk-~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1189 ---LK-NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred ---hh-cCccccceeEEEecCCceEEEEecCCceEEEEEee
Confidence 11 11123679999999999999999999999999987
No 238
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.11 E-value=6.8e-07 Score=73.76 Aligned_cols=227 Identities=13% Similarity=0.102 Sum_probs=124.3
Q ss_pred CCCCCCCEEEEeec----------CCcEEEeecCCCcEEEEEecCCCce--------eeeeecCCeEEEEEcCCCccccc
Q 024407 1 MFQANSMTLITGSA----------DQTAKLWNVETGAQLFTFNFDSPAR--------SVDFAVGDKLAVITTDPFMELNS 62 (268)
Q Consensus 1 ~fs~d~~~l~s~s~----------D~tv~~wd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 62 (268)
++|||++.|+.|.. +..|.+||+++.+.+..+......+ ...++++++.+.+++-. -..
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~---p~~ 128 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS---PSP 128 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC---CCC
Confidence 47999999998887 7899999999999998888655544 77788887776665411 011
Q ss_pred ceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEE--------eCCCcEEEEECCC-Cceee-ecccccCc
Q 024407 63 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA--------GEDAIVRIWDTET-GKLLK-ESDKETGH 132 (268)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--------~~dg~i~iwd~~~-~~~~~-~~~~~~~h 132 (268)
.+.+.++. +.+-+..+. -|++..++.. +.||......+.+ ++... .......-
T Consensus 129 ~V~VvD~~------~~kvv~ei~-----------vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~ 191 (352)
T TIGR02658 129 AVGVVDLE------GKAFVRMMD-----------VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPE 191 (352)
T ss_pred EEEEEECC------CCcEEEEEe-----------CCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCC
Confidence 22222221 111122111 1333333322 3444444333322 11110 00000000
Q ss_pred ccceEEE-EEcC-CCCEEEEeeCCCcEEEEECCCcc-----eeeeeec--------CCceeEEEEccCCCeEEEeec---
Q 024407 133 KKTITSL-AKAA-DGSHFLTGSLDKSAKLWDARTLE-----LIKTYVT--------ERPVNAVTMSPLLDHVVLGGG--- 194 (268)
Q Consensus 133 ~~~v~~v-~~s~-~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--- 194 (268)
..++..- .+.+ ++.++..... |+|.+.|+...+ ....+.. +....-+++++.++.+++...
T Consensus 192 ~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~ 270 (352)
T TIGR02658 192 DEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRA 270 (352)
T ss_pred ccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCc
Confidence 0000000 2344 7777766666 999999965432 2222111 112234888988887776432
Q ss_pred -----CCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC-eEEeee-CCCeEEEEeeCC
Q 024407 195 -----QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSGG-EDGYVRLHHFDP 261 (268)
Q Consensus 195 -----~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~lasgs-~Dg~i~i~~~~~ 261 (268)
..+..++..|..++....+.- .+ ..+..++++||++ .|.+.. .++.|.+++...
T Consensus 271 ~~thk~~~~~V~ViD~~t~kvi~~i~-----------vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 271 KWTHKTASRFLFVVDAKTGKRLRKIE-----------LG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred cccccCCCCEEEEEECCCCeEEEEEe-----------CC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 222467777777666544321 12 2578999999999 766555 578899887654
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.11 E-value=2.8e-07 Score=77.30 Aligned_cols=243 Identities=16% Similarity=0.138 Sum_probs=131.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+||++++++++.|+.|.++|+.+.+.+.+++.......++++++++.+++++. ....+.+.+. .+.+++
T Consensus 44 ~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~----~~~~v~v~D~------~tle~v 113 (369)
T PF02239_consen 44 FSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY----EPGTVSVIDA------ETLEPV 113 (369)
T ss_dssp -TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE----ETTEEEEEET------TT--EE
T ss_pred ecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec----CCCceeEecc------ccccce
Confidence 899999999999999999999999999999998888899999998887776641 1122222221 233445
Q ss_pred EEEec-------CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEE-ee
Q 024407 82 LILKG-------PQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT-GS 152 (268)
Q Consensus 82 ~~~~~-------~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s-~~ 152 (268)
..++. ...++..+..+|....++..- ..+.|-+-|....+....... ..........++|++.+++. +.
T Consensus 114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI--KVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE--E--TTEEEEEE-TTSSEEEEEEG
T ss_pred eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee--cccccccccccCcccceeeeccc
Confidence 54442 234677788888887555554 458888888776543321110 12234567889999998765 46
Q ss_pred CCCcEEEEECCCcceeeeeecCC-----ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccc
Q 024407 153 LDKSAKLWDARTLELIKTYVTER-----PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 227 (268)
Q Consensus 153 ~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 227 (268)
.++.|-++|.++++.+..+.... +...+ -+|..+.+....+.....+......... .++...-+.++++.
T Consensus 192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~----v~d~~~wkvv~~I~ 266 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVS----VHDDYAWKVVKTIP 266 (369)
T ss_dssp GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-----STTTBTSEEEEEE
T ss_pred ccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccc----cchhhcCeEEEEEE
Confidence 67789999999987766543221 11111 2443333333333333222211100000 01111111122233
Q ss_pred ccccceEEEEECCCCCeEEee----eCCCeEEEEeeCCC
Q 024407 228 GHFGPINALAFNPDGKSFSSG----GEDGYVRLHHFDPD 262 (268)
Q Consensus 228 ~h~~~v~~~~~sp~~~~lasg----s~Dg~i~i~~~~~~ 262 (268)
....+ .-++-||+++++... ...++|.|++.+.-
T Consensus 267 ~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 267 TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp -SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 33334 567889999998876 45588998877653
No 240
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=6.5e-08 Score=85.07 Aligned_cols=245 Identities=13% Similarity=0.125 Sum_probs=146.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCC--C-c-EEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVET--G-A-QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~--~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
|||.++++|+|..||.|.+|.--. . + .-..+. |..++.++.|++++..++.+.. .+.+-.|.+.+
T Consensus 213 ~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~-----E~VLv~Wq~~T----- 282 (792)
T KOG1963|consen 213 LSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR-----EGVLVLWQLET----- 282 (792)
T ss_pred eccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeeccc-----ceEEEEEeecC-----
Confidence 799999999999999999995322 1 1 112222 5678999999886654443321 22333444432
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eeecccc-----cCcccceEEEEEcCCCCEE
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL---LKESDKE-----TGHKKTITSLAKAADGSHF 148 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-----~~h~~~v~~v~~s~~~~~l 148 (268)
++ -+-|+--.++|.++.++||+........|+.|.+-.+.+... +..+... ...++-.+.+.++|-.+.+
T Consensus 283 -~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 283 -GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred -CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 22 233555578899999999999999899999999987654322 2212111 1134567788899977788
Q ss_pred EEeeCCCcEEEEECCCcceeeeeec------CC------ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeee
Q 024407 149 LTGSLDKSAKLWDARTLELIKTYVT------ER------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD 216 (268)
Q Consensus 149 ~s~~~d~~i~iwd~~~~~~~~~~~~------~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 216 (268)
+-.+..+.|.+||+-+.+.+..+.. .. .+.++..+..+.. +++ ..- .+-......+....+||.
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~-maT-~E~--~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSW-MAT-LEA--RIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceE-EEE-eee--eehhhhccCceEEEEEEE
Confidence 8889999999999988776654421 01 1122222222111 111 000 000011223456677776
Q ss_pred hhhhhhh-----ccccccccceEEEEECC--CCCeEEeeeCCCeEEEEeeCCC
Q 024407 217 KILQEEI-----GGVKGHFGPINALAFNP--DGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 217 ~~~~~~~-----~~~~~h~~~v~~~~~sp--~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
......- .-...|...+.+..+.+ ....++|+|.||.++||-+.++
T Consensus 437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred EcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 5332210 11234665555555543 2337999999999999999543
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=2.6e-07 Score=79.62 Aligned_cols=219 Identities=13% Similarity=0.101 Sum_probs=121.0
Q ss_pred cEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEE
Q 024407 17 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 96 (268)
Q Consensus 17 tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 96 (268)
.|.++|.+.+..........++....|+|++..++..+... -...+.++.+ .+++. ..+....+.+....|
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l------~~g~~-~~l~~~~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNL------DTGRR-EQITNFEGLNGAPAW 250 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEEC------CCCCE-EEccCCCCCcCCeEE
Confidence 47777877555444445566778888998765544333211 0112222222 12222 122222334456899
Q ss_pred cCCCCEEE-EEeCCC--cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-CC--cEEEEECCCcceeee
Q 024407 97 GPLNRTII-SAGEDA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKT 170 (268)
Q Consensus 97 ~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~ 170 (268)
+|+|++|+ +...+| .|.+||+.+++... +. .+........|+||+..++..+. ++ .|.++|+.+++....
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt---~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT---NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc---cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 99999876 455555 58888998876432 22 24445566789999998776553 33 577778877664322
Q ss_pred eecCCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeee
Q 024407 171 YVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 249 (268)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs 249 (268)
...........|+|++..+++....++ ..+..+|...+.... .. +........|+|||+.++-.+
T Consensus 327 t~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt------------~~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 327 TFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LT------------DTSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred ecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--cc------------CCCCCCCceECCCCCEEEEEE
Confidence 222222334678999888776654332 235555544433211 10 111122458999999987655
Q ss_pred CC-Ce--EEEEeeCCC
Q 024407 250 ED-GY--VRLHHFDPD 262 (268)
Q Consensus 250 ~D-g~--i~i~~~~~~ 262 (268)
.+ |. +.+.+.+++
T Consensus 393 ~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 393 RQQGRGVLMLVSINGR 408 (430)
T ss_pred ecCCceEEEEEECCCC
Confidence 43 33 455555443
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=7.5e-08 Score=83.13 Aligned_cols=182 Identities=10% Similarity=0.086 Sum_probs=103.7
Q ss_pred CCCCCCCEEEEeecC-C--cEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 1 MFQANSMTLITGSAD-Q--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D-~--tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
.|||||+.|+-.+.+ + .|.+||+.+++...............|+|++..++...+. .....++.+.- .+
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~----~g~~~Iy~~dl----~t 295 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSK----DGQPEIYVVDI----AT 295 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeC----CCCeEEEEEEC----CC
Confidence 389999988876543 3 5888899887654333233344567889876644433211 11222222211 12
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL- 153 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~- 153 (268)
+ ....+..+........|+|||+.|+..+. ++ .|.++|+.+++... +.. ........+|+|||..++..+.
T Consensus 296 g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~---~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 296 K-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF---EGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec---CCCCCcCeeECCCCCEEEEEEec
Confidence 2 22334444455677899999998865543 33 46667887766432 211 1122334689999999876654
Q ss_pred CC--cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCC
Q 024407 154 DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 196 (268)
Q Consensus 154 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (268)
++ .|.++|+.+++.. .+..........|+|++..++.....+
T Consensus 371 ~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~~~ 414 (448)
T PRK04792 371 NGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTTYQ 414 (448)
T ss_pred CCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEecC
Confidence 33 4556788776542 222111122347899888777655443
No 243
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=3.7e-09 Score=85.17 Aligned_cols=168 Identities=17% Similarity=0.170 Sum_probs=122.6
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------ceeeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
..+.+|.+.|+.+.|+.++++|++||.|..+++|.++.. +++... ...|.+-|.+++|......+.++..++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~--~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM--EHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec--cCccccceEEEEEccCCeeEecCCCcc
Confidence 346799999999999999999999999999999998642 332211 124678999999999989999999999
Q ss_pred cEEEEECCCcceeeeeecCC---ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 156 SAKLWDARTLELIKTYVTER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 156 ~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
+|.+.|+.+.+.+..+.++. .+..+..+|. +.+++....+ +.+..||.+........+- +-.....
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~-~~V~~~D~Rd~~~~~~~~~---------~AN~~~~ 196 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRA-KLVSFIDNRDRQNPISLVL---------PANSGKN 196 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCC-CceEEEEecC-ceEEEEeccCCCCCCceee---------ecCCCcc
Confidence 99999999988777665544 6788888998 4555554444 4556677665432211110 0011234
Q ss_pred eEEEEECCCC-CeEEeeeCCCeEEEEeeCCC
Q 024407 233 INALAFNPDG-KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 233 v~~~~~sp~~-~~lasgs~Dg~i~i~~~~~~ 262 (268)
-..+-|+|-. ..|++.+.-+-+.+|..+..
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 6678899976 56888898899999987643
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=1.3e-07 Score=81.45 Aligned_cols=181 Identities=10% Similarity=0.074 Sum_probs=106.4
Q ss_pred CCCCCCCEEEEeecC---CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 1 MFQANSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D---~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
.|||||+.|+..+.+ ..|.+||+++++........+......|+|++..++...... +...++.+.. .+
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~----g~~~Iy~~d~----~~ 276 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD----GNPEIYVMDL----AS 276 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC----CCceEEEEEC----CC
Confidence 389999998876654 368889998887644333444555678998765444332111 1112222111 11
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
+ ....+..+........|+|+|+.|+..+. ++ .|.++|+.+++... +.. .+ .......++|++..++..+.+
T Consensus 277 ~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~-~~--~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 277 R-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTF-VG--NYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred C-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec-CC--CCccceEECCCCCEEEEEEcc
Confidence 2 22334444455667899999998766553 33 57777887776432 211 11 223346789999998876543
Q ss_pred -C--cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecC
Q 024407 155 -K--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ 195 (268)
Q Consensus 155 -~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (268)
+ .|.++|+.+++.. .+..........|+|++..++.+...
T Consensus 352 ~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 352 DGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEec
Confidence 3 5888999877542 22222122345789988877766543
No 245
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.04 E-value=1.1e-09 Score=60.58 Aligned_cols=38 Identities=29% Similarity=0.665 Sum_probs=36.0
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 116 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 116 (268)
+++..+++|.++|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=7e-07 Score=77.19 Aligned_cols=219 Identities=10% Similarity=0.052 Sum_probs=118.7
Q ss_pred cEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEE
Q 024407 17 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 96 (268)
Q Consensus 17 tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 96 (268)
.+.++|..............++....|+|++..++..+.. .....++.+.- .+++.. .+....+......|
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~----~g~~~L~~~dl----~tg~~~-~lt~~~g~~~~~~w 269 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFE----NRKAEIFVQDI----YTQVRE-KVTSFPGINGAPRF 269 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEec----CCCcEEEEEEC----CCCCeE-EecCCCCCcCCeeE
Confidence 5666776554443334556677888999977654443321 11112222211 122221 12211223346799
Q ss_pred cCCCCEEEE-EeCCCc--EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-CC--cEEEEECCCcceeee
Q 024407 97 GPLNRTIIS-AGEDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKT 170 (268)
Q Consensus 97 ~~~~~~l~s-~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~ 170 (268)
+|||+.|+. .+.++. |.++|+.+++.. .+. .+.......+|+||+..++..+. ++ .|.++|+.+++....
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt---~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALT-RIT---RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 999998764 566665 777788877543 222 23445667889999998876543 33 466778877654332
Q ss_pred eecCCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeee
Q 024407 171 YVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 249 (268)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs 249 (268)
...........|+|+++.+++...... ..++..|...+.... +... .......|+|||+.|+..+
T Consensus 346 t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-------------lt~~-~~d~~ps~spdG~~I~~~~ 411 (448)
T PRK04792 346 TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-------------LTST-RLDESPSVAPNGTMVIYST 411 (448)
T ss_pred ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-------------ccCC-CCCCCceECCCCCEEEEEE
Confidence 112222234678999888776544322 234444544433211 0101 1112347999999877555
Q ss_pred -CCCe--EEEEeeCCC
Q 024407 250 -EDGY--VRLHHFDPD 262 (268)
Q Consensus 250 -~Dg~--i~i~~~~~~ 262 (268)
.+|. +.++..++.
T Consensus 412 ~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 412 TYQGKQVLAAVSIDGR 427 (448)
T ss_pred ecCCceEEEEEECCCC
Confidence 4444 455555544
No 247
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=6.1e-09 Score=83.96 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=100.4
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcE----EEEEecCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQ----LFTFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
+++|++++||.+-.++...+.+...... ......+.....+.+.... ...++-..+. +.........
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD--------~~~~di~s~~ 140 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGD--------VYSFDILSAD 140 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCC--------ceeeeeeccc
Confidence 4688899999999888877777644322 1111122222222222221 1222111111 1111111111
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
+ + +...+-||-+-++++.|+||+++|+++..|..||+-.....-.+..+- .||+.-|..+++-++ ..|++++.|+
T Consensus 141 ~-~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc--lGH~eFVS~isl~~~-~~LlS~sGD~ 215 (390)
T KOG3914|consen 141 S-G-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC--LGHKEFVSTISLTDN-YLLLSGSGDK 215 (390)
T ss_pred c-c-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc--cccHhheeeeeeccC-ceeeecCCCC
Confidence 1 1 122245888899999999999999999999999998776654444433 489999999988654 4589999999
Q ss_pred cEEEEECCCcceeeee
Q 024407 156 SAKLWDARTLELIKTY 171 (268)
Q Consensus 156 ~i~iwd~~~~~~~~~~ 171 (268)
+|++||.++++++.++
T Consensus 216 tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTC 231 (390)
T ss_pred cEEEEecccCCccccc
Confidence 9999999999887665
No 248
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=6.7e-06 Score=66.08 Aligned_cols=245 Identities=16% Similarity=0.217 Sum_probs=146.3
Q ss_pred CCCCCCEEEEeecC---CcEEEeecCC--CcEEE--EEec-CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 2 FQANSMTLITGSAD---QTAKLWNVET--GAQLF--TFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 2 fs~d~~~l~s~s~D---~tv~~wd~~~--~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
|+|+++.|+++-.+ |.|--|.++. |++.. .... ..+...+++.+.++++..++-.. +.+.+..+..+.
T Consensus 47 ~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~----g~v~v~p~~~dG 122 (346)
T COG2706 47 VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS----GSVSVYPLQADG 122 (346)
T ss_pred ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC----ceEEEEEcccCC
Confidence 78999999998776 7777776654 54432 2222 33347777777777766654221 222232222111
Q ss_pred CCCCCceEEEEecCCCC----------eEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeecccccCcccceEEEEEc
Q 024407 74 ADQGGESVLILKGPQGR----------INRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 142 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s 142 (268)
... ..+..+ .|.+. +.+..++|++++|++.. ....|.+|++..++....-...-.-.+.-..++|+
T Consensus 123 ~l~--~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH 199 (346)
T COG2706 123 SLQ--PVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH 199 (346)
T ss_pred ccc--cceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEc
Confidence 001 111111 23322 77889999999998774 44558999999876543211111123445679999
Q ss_pred CCCCEEEEe-eCCCcEEEEECCCc----ceeeeee-------cCCceeEEEEccCCCeEEEe-ecCCCceEEEeccCCCe
Q 024407 143 ADGSHFLTG-SLDKSAKLWDARTL----ELIKTYV-------TERPVNAVTMSPLLDHVVLG-GGQDASAVTTTDHRAGK 209 (268)
Q Consensus 143 ~~~~~l~s~-~~d~~i~iwd~~~~----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~d~~~~~ 209 (268)
|++.+.... =.+++|.+|..... +.++.+. ......++..++++.++.++ -+.+...+...|...+.
T Consensus 200 pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~ 279 (346)
T COG2706 200 PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK 279 (346)
T ss_pred CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE
Confidence 999987654 46899999987652 2223221 13356678889988776655 24444455555655555
Q ss_pred eeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCC-CeEEEEeeCCCc
Q 024407 210 FEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED-GYVRLHHFDPDY 263 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~D-g~i~i~~~~~~~ 263 (268)
.....+... .++ .-....|+|.+++|+.+.+| ..|.+|+.+++-
T Consensus 280 L~~~~~~~t--------eg~--~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 280 LELVGITPT--------EGQ--FPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEEecc--------CCc--CCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 443322211 122 23468899999998888765 569999998874
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.97 E-value=9.9e-06 Score=67.74 Aligned_cols=248 Identities=14% Similarity=0.111 Sum_probs=139.0
Q ss_pred EEEEeecC----CcEEEeec--CCCcEE--EEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 8 TLITGSAD----QTAKLWNV--ETGAQL--FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 8 ~l~s~s~D----~tv~~wd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
+++.|+.. +.|..|++ ++++.. ...........+.+++...++.+.+... .-...+....+.... ....
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~--g~L~ 77 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDT--GTLT 77 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTT--TEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCc--ceeE
Confidence 36677777 79999988 444432 2233455677888888877776665421 112233333332210 1111
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-ceeeec--ccc--------cCcccceEEEEEcCCCCE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETG-KLLKES--DKE--------TGHKKTITSLAKAADGSH 147 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~-~~~~~~--~~~--------~~h~~~v~~v~~s~~~~~ 147 (268)
.+..........+.+.++|++++|+++. .+|.|.++++... +..... ... ..-.....++.++|++++
T Consensus 78 ~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 78 LLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp EEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE
T ss_pred EeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE
Confidence 2222332344567899999999988775 6999999999873 322211 100 011244678899999998
Q ss_pred EEEee-CCCcEEEEECCCcc--eee----eeecCCceeEEEEccCCCeEEEeecCCCce-EEEeccCCCeeeeEeeehhh
Q 024407 148 FLTGS-LDKSAKLWDARTLE--LIK----TYVTERPVNAVTMSPLLDHVVLGGGQDASA-VTTTDHRAGKFEAKFFDKIL 219 (268)
Q Consensus 148 l~s~~-~d~~i~iwd~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~~~~~~~~~ 219 (268)
++++. ....|.+|++.... ... .+.......-+.++|++..+.+........ +...+...+.+.....-...
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 77653 45679999987644 211 123344577899999988777665444332 22233224433221110001
Q ss_pred hhhhccccccccceEEEEECCCCCeEEeee-CCCeEEEEeeCCC
Q 024407 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFDPD 262 (268)
Q Consensus 220 ~~~~~~~~~h~~~v~~~~~sp~~~~lasgs-~Dg~i~i~~~~~~ 262 (268)
+. ...+ ......++++|||++|.... .+..|-+|+++++
T Consensus 238 ~~---~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 238 PE---GFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp ET---TSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred cc---cccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 11 0111 12567899999999866544 5678999999654
No 250
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.3e-07 Score=75.59 Aligned_cols=162 Identities=20% Similarity=0.285 Sum_probs=100.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----Cceee-------ecccccCcccceEEEEEcCCCCEEEEeeC-
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET----GKLLK-------ESDKETGHKKTITSLAKAADGSHFLTGSL- 153 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~-------~~~~~~~h~~~v~~v~~s~~~~~l~s~~~- 153 (268)
..+..|++++|-|.+..-++.+..+-|.+|.... ++.++ ++...++| .+|+++.+.+||..+++++.
T Consensus 138 ~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 138 VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 4478899999999885444444556699997643 12111 22233566 78999999999999999875
Q ss_pred CCcEEEEECCCcceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 154 DKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
|..|.+||+.++..+.-. .....+.-+.|+|+++.++++.- ++. ...|... ..|.. +... . -++.
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~-dav-frlw~e~------q~wt~---erw~--l-gsgr 282 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC-DAV-FRLWQEN------QSWTK---ERWI--L-GSGR 282 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc-cce-eeeehhc------cccee---ccee--c-cCCc
Confidence 567999999988765433 22335667899999887776543 322 2233111 11111 1111 1 1247
Q ss_pred eEEEEECCCCCeE-EeeeCCCeEEEEeeCCC
Q 024407 233 INALAFNPDGKSF-SSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 233 v~~~~~sp~~~~l-asgs~Dg~i~i~~~~~~ 262 (268)
|....|+|+|+.| .+.+..-.+.=-+++++
T Consensus 283 vqtacWspcGsfLLf~~sgsp~lysl~f~~~ 313 (445)
T KOG2139|consen 283 VQTACWSPCGSFLLFACSGSPRLYSLTFDGE 313 (445)
T ss_pred eeeeeecCCCCEEEEEEcCCceEEEEeecCC
Confidence 9999999999874 45555544443344443
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.96 E-value=2.9e-08 Score=78.74 Aligned_cols=88 Identities=20% Similarity=0.399 Sum_probs=72.7
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
.-.++..+++|.++++++.|.|..+.+.+|..|..+.+||+.-++-+.- ...+|...|..+...+.-..+.+++.||.
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~--el~gh~~kV~~l~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY--ELQGHNDKVQALSYAQHTRQLISCGEDGG 263 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee--eeccchhhhhhhhhhhhheeeeeccCCCe
Confidence 3456788999999999999999999999999999999999976543321 12468888888877777788999999999
Q ss_pred EEEEECCCcc
Q 024407 157 AKLWDARTLE 166 (268)
Q Consensus 157 i~iwd~~~~~ 166 (268)
|-+|+++..+
T Consensus 264 i~~w~mn~~r 273 (404)
T KOG1409|consen 264 IVVWNMNVKR 273 (404)
T ss_pred EEEEecccee
Confidence 9999998643
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=6.8e-09 Score=97.42 Aligned_cols=152 Identities=20% Similarity=0.277 Sum_probs=113.0
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCC--ceeeeee-cCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFNFDSP--ARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
+|-..+-+||+.||.|++|.-..+.++..++..++ +....|. .|++..++-.++.+.++..- .+
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-------------pk 2283 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-------------PK 2283 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-------------Cc
Confidence 45667789999999999999999999998885444 4444443 46777777666655554442 35
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
+....+.|+...++..|-. ..+++++ .++.+.+||..-.....-+. .+|...++++++.|....|++|+.+|.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc
Confidence 5666778998888888865 4556654 56789999975432222222 579999999999999999999999999
Q ss_pred EEEEECCCcceeeee
Q 024407 157 AKLWDARTLELIKTY 171 (268)
Q Consensus 157 i~iwd~~~~~~~~~~ 171 (268)
|.+||+|..+.+.++
T Consensus 2360 v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTF 2374 (2439)
T ss_pred EEEeehHHHHHHHHh
Confidence 999999987665554
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.2e-06 Score=73.94 Aligned_cols=236 Identities=12% Similarity=0.204 Sum_probs=130.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCe--EEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK--LAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|++|..+.+ ==....+.+|++.+.+.+...-+...+..+.++|+.. .+++-.-...-.-..++++...-. ....
T Consensus 133 fs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~---~~~~ 208 (566)
T KOG2315|consen 133 FSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE---GQHQ 208 (566)
T ss_pred cccchhhhh-hhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc---cccc
Confidence 666665422 2223578999988765554443455667777777632 222211111111222233222200 0000
Q ss_pred eEEEEecC-CCCeEEEEEcCCCCE-EEEEe-----------CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC
Q 024407 80 SVLILKGP-QGRINRAVWGPLNRT-IISAG-----------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 146 (268)
Q Consensus 80 ~~~~~~~~-~~~v~~~~~~~~~~~-l~s~~-----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~ 146 (268)
++ ..+.- ...=..+.|++-|.- |+.++ .+.++++.+.......-.+ ...++|.++.|++.+.
T Consensus 209 ~~-a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L----~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 209 PV-ANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL----LKEGPVHDVTWSPSGR 283 (566)
T ss_pred hh-hhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec----CCCCCceEEEECCCCC
Confidence 00 00000 011133566665542 22222 2346777777632222222 2468999999999998
Q ss_pred EEEEe--eCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEee-cCCCceEEEeccCCCeeeeEeeehhhhhhh
Q 024407 147 HFLTG--SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG-GQDASAVTTTDHRAGKFEAKFFDKILQEEI 223 (268)
Q Consensus 147 ~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 223 (268)
.++++ -.=.++.+||++.. ++..+ .+.+.+++-|+|.+..++++| |.-.+.+..||..... .+
T Consensus 284 EF~VvyGfMPAkvtifnlr~~-~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K------------~i 349 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLRGK-PVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK------------LI 349 (566)
T ss_pred EEEEEEecccceEEEEcCCCC-EeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh------------hc
Confidence 87765 45668999999864 33333 456789999999988777654 3333455666654322 22
Q ss_pred ccccccccceEEEEECCCCCeEEeeeC------CCeEEEEeeCCC
Q 024407 224 GGVKGHFGPINALAFNPDGKSFSSGGE------DGYVRLHHFDPD 262 (268)
Q Consensus 224 ~~~~~h~~~v~~~~~sp~~~~lasgs~------Dg~i~i~~~~~~ 262 (268)
..... ..-+-++|+|||++|+|+.- |..++||++.+-
T Consensus 350 ~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 350 AKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 22222 23456899999999988764 677899998864
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=5.7e-06 Score=66.48 Aligned_cols=237 Identities=16% Similarity=0.181 Sum_probs=134.4
Q ss_pred CCcEEEeecCCC----cEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE--ecCC
Q 024407 15 DQTAKLWNVETG----AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KGPQ 88 (268)
Q Consensus 15 D~tv~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 88 (268)
++-|.+|++.+. +..........+..+.+.+.++.+.+...... .+.+....++.. .|.....- ....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~--~ggvaay~iD~~----~G~Lt~ln~~~~~g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE--EGGVAAYRIDPD----DGRLTFLNRQTLPG 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC--cCcEEEEEEcCC----CCeEEEeeccccCC
Confidence 578999998732 22223334556778888887765555432210 222223333221 11111110 0112
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CceeeecccccCcccc----------eEEEEEcCCCCEEEEee-CCC
Q 024407 89 GRINRAVWGPLNRTIISAG-EDAIVRIWDTET-GKLLKESDKETGHKKT----------ITSLAKAADGSHFLTGS-LDK 155 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~~h~~~----------v~~v~~s~~~~~l~s~~-~d~ 155 (268)
.+-+.+++++++++++++. .-|.|.++-+++ |....... ...|... +....+.|++.+|++.. .-.
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-VVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-eeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 2338899999999998775 668899998866 32221111 0112222 77788999999988774 345
Q ss_pred cEEEEECCCcceeee----eecCCceeEEEEccCCCeEEEeecCCCce-EEEeccCCCeeeeEeeehhhhhhhccccccc
Q 024407 156 SAKLWDARTLELIKT----YVTERPVNAVTMSPLLDHVVLGGGQDASA-VTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 230 (268)
Q Consensus 156 ~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~ 230 (268)
+|.+|++..+..... +.......=+.|+|+++...+...-++.+ ++..+...+.+....--...++. +.+ .
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d---F~g-~ 243 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED---FTG-T 243 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc---cCC-C
Confidence 699999986543221 12233456789999988777665554433 23334433444321111111111 112 2
Q ss_pred cceEEEEECCCCCeEEeeeC-CCeEEEEeeCCC
Q 024407 231 GPINALAFNPDGKSFSSGGE-DGYVRLHHFDPD 262 (268)
Q Consensus 231 ~~v~~~~~sp~~~~lasgs~-Dg~i~i~~~~~~ 262 (268)
....+|..+|||++|..+.. ...|-+|++++.
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 45778999999999886542 346888888765
No 255
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=3.7e-08 Score=82.95 Aligned_cols=118 Identities=21% Similarity=0.314 Sum_probs=80.4
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
+.+.++|+|.|+|||+|.++..- + +..+..+..++
T Consensus 746 NENSFiSASkDKTVKLWSik~Eg-------------------D--------------------------~~~tsaCQfTY 780 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEG-------------------D--------------------------EIGTSACQFTY 780 (1034)
T ss_pred cccceeeccCCceEEEEEecccc-------------------C--------------------------ccccceeeeEh
Confidence 45679999999999999875310 0 01123345567
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC--CCEEE-EeeCCCcEEEEE
Q 024407 85 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFL-TGSLDKSAKLWD 161 (268)
Q Consensus 85 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~-s~~~d~~i~iwd 161 (268)
..|+++|.++.|-.+-++++ +.||-|++||.--++...++.....| +.+..+.+-++ ...++ .++...+|+++|
T Consensus 781 ~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 781 QAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred hhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeee
Confidence 78999999999999888876 57999999999888777655433323 33444444443 33333 347889999999
Q ss_pred CCCcceeee
Q 024407 162 ARTLELIKT 170 (268)
Q Consensus 162 ~~~~~~~~~ 170 (268)
.|..+....
T Consensus 858 aRsce~~~E 866 (1034)
T KOG4190|consen 858 ARSCEWTCE 866 (1034)
T ss_pred cccccceee
Confidence 997665443
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=2.1e-06 Score=73.70 Aligned_cols=221 Identities=10% Similarity=0.043 Sum_probs=111.2
Q ss_pred cEEEeecCCCcEEEEEecCCCceeeeeecCCe-EEE--EEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEE
Q 024407 17 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDK-LAV--ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 93 (268)
Q Consensus 17 tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 93 (268)
.|.+.|.+.+....-.........-.|+|++. +++ ++... +...++.+.-.. .....+..+ .+....
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~-----g~~~I~~~~l~~--g~~~~lt~~---~g~~~~ 235 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL-----GVPKIFLGSLEN--PAGKKILAL---QGNQLM 235 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC-----CCceEEEEECCC--CCceEeecC---CCCccc
Confidence 45556655443322222344556668888764 222 33211 112222222110 111222223 333456
Q ss_pred EEEcCCCCEEEEEeC-CC----cEEEEECCCCc--eeeecccccCcccceEEEEEcCCCCEEEEee-CCCcEEEEE--CC
Q 024407 94 AVWGPLNRTIISAGE-DA----IVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWD--AR 163 (268)
Q Consensus 94 ~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~iwd--~~ 163 (268)
..|+|||++|+..+. +| .+..|++..+. ....+- ..........+|+|||..|+..+ .++...+|. +.
T Consensus 236 p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt--~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 236 PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL--NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee--cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 899999998875542 22 34447766531 111221 11223345678999999887655 466555554 33
Q ss_pred C-cceeeeee-cCCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC
Q 024407 164 T-LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240 (268)
Q Consensus 164 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 240 (268)
. +.....+. .........|+|+++.+++....++ ..+..+|...+.... +......+....|+|
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-------------Lt~~~~~~~~p~wSp 380 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-------------LTTSPENKESPSWAI 380 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-------------ccCCCCCccceEECC
Confidence 2 11122222 2234567789999988877654332 345555554443211 111122456789999
Q ss_pred CCCeEEe-eeCC--CeEEEEeeCCC
Q 024407 241 DGKSFSS-GGED--GYVRLHHFDPD 262 (268)
Q Consensus 241 ~~~~las-gs~D--g~i~i~~~~~~ 262 (268)
||+.|+. +..+ ..|.++++++.
T Consensus 381 DG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 381 DSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECCCC
Confidence 9998764 3333 34555565543
No 257
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=9.1e-08 Score=80.75 Aligned_cols=179 Identities=15% Similarity=0.128 Sum_probs=117.3
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecC-CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
...+++.|+. ..|...+++-|+.+..+..+ +.+.++...+-..++.++.. .+.+..|+.....--..-.....
T Consensus 145 scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~-----~g~VEfwDpR~ksrv~~l~~~~~ 218 (703)
T KOG2321|consen 145 SCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE-----DGVVEFWDPRDKSRVGTLDAASS 218 (703)
T ss_pred CccEEEeecC-cceEEEEccccccccccccccccceeeeecCccceEEeccc-----CceEEEecchhhhhheeeecccc
Confidence 3344444444 57888999999999888865 56777777776666555542 23344444332110000000001
Q ss_pred EecC-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC--CCEEEEeeCCCc
Q 024407 84 LKGP-----QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKS 156 (268)
Q Consensus 84 ~~~~-----~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~ 156 (268)
+..| ...|+++.|+.+|-.+++|..+|.+.|||+++.+++..-.. +...++..++|.+. ++.++|. ....
T Consensus 219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--~~e~pi~~l~~~~~~~q~~v~S~-Dk~~ 295 (703)
T KOG2321|consen 219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--GYELPIKKLDWQDTDQQNKVVSM-DKRI 295 (703)
T ss_pred cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--CCccceeeecccccCCCceEEec-chHH
Confidence 1112 24599999999999999999999999999999877643321 23567888888765 3334433 3356
Q ss_pred EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEe
Q 024407 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (268)
++|||..+++....+.....++.+++-|..+.++++
T Consensus 296 ~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 296 LKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred hhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 899999999888777666778888888876666554
No 258
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.84 E-value=4.6e-09 Score=57.98 Aligned_cols=35 Identities=37% Similarity=0.742 Sum_probs=32.2
Q ss_pred ccccccccceEEEEECCCCCeEEeeeCCCeEEEEe
Q 024407 224 GGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 224 ~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~ 258 (268)
..+++|...|++++|+|++++|+||+.|++|++|+
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34678999999999999999999999999999995
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=7.5e-07 Score=70.99 Aligned_cols=256 Identities=14% Similarity=0.148 Sum_probs=146.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcE-----EEEE-------------ecCCCceeeeeecC---CeEEEEEcCCCccc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQ-----LFTF-------------NFDSPARSVDFAVG---DKLAVITTDPFMEL 60 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~-----~~~~-------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 60 (268)
|..+|.+||||..+|.|-++.-+.... ...+ +..+++..+.|.+. ..+++..+++...+
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKl 112 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKL 112 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceee
Confidence 788999999999999999986433211 1112 23355666677653 34566666665544
Q ss_pred ccceEeee------eeeCCC-----------------CCCCceEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 024407 61 NSAIHVKR------IARDPA-----------------DQGGESVLIL-KGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 116 (268)
Q Consensus 61 ~~~~~~~~------~~~~~~-----------------~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 116 (268)
|....-.. +....+ .....|..++ .+|+=-|+++.++.|++.++++ .|=.|.+|.
T Consensus 113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWn 191 (433)
T KOG1354|consen 113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWN 191 (433)
T ss_pred eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeecc
Confidence 44321100 000000 0001122222 2456668899999999998875 778899999
Q ss_pred CCCC-cee--eecccc--cCcccceEEEEEcCC-CCEEEEeeCCCcEEEEECCCcce-e--eee-ec-------------
Q 024407 117 TETG-KLL--KESDKE--TGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLEL-I--KTY-VT------------- 173 (268)
Q Consensus 117 ~~~~-~~~--~~~~~~--~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~iwd~~~~~~-~--~~~-~~------------- 173 (268)
++-- +.. -.+++. ..-..-|++..|+|. .+.++=.+.-|+|++-|+|.... - .++ ..
T Consensus 192 lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei 271 (433)
T KOG1354|consen 192 LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI 271 (433)
T ss_pred ccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence 8742 211 122110 112345777788885 45666677789999999995321 0 011 10
Q ss_pred CCceeEEEEccCCCeEEEeecCCCceEEEeccC--CCeeeeEeeehhhhhhhccccccccc---eEEEEECCCCCeEEee
Q 024407 174 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVKGHFGP---INALAFNPDGKSFSSG 248 (268)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~sp~~~~lasg 248 (268)
-..+..+.|+++|.+++. .+...+..||.. .+.+............+..+- ..+. -..++|+.++.+++||
T Consensus 272 IsSISDvKFs~sGryils---RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY-EnD~IfdKFec~~sg~~~~v~TG 347 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILS---RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY-ENDAIFDKFECSWSGNDSYVMTG 347 (433)
T ss_pred hhhhhceEEccCCcEEEE---eccceeEEEeccccCCcceEEeehHhHHHHHHHHh-hccchhheeEEEEcCCcceEecc
Confidence 124667889998877775 555667777752 222222211111111111110 0122 2457999999999999
Q ss_pred eCCCeEEEEeeCCC
Q 024407 249 GEDGYVRLHHFDPD 262 (268)
Q Consensus 249 s~Dg~i~i~~~~~~ 262 (268)
|-....+++.++.+
T Consensus 348 sy~n~frvf~~~~g 361 (433)
T KOG1354|consen 348 SYNNVFRVFNLARG 361 (433)
T ss_pred cccceEEEecCCCC
Confidence 99999999986544
No 260
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.78 E-value=5.8e-06 Score=69.21 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=77.3
Q ss_pred cccceEEEEEcCCCCEEEEee--CCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecC-CCceEEEeccCCC
Q 024407 132 HKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ-DASAVTTTDHRAG 208 (268)
Q Consensus 132 h~~~v~~v~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~ 208 (268)
-.++|..++|.|.++.+++++ .+-.+-++|++.. +.....+...+.+.|+|...++++++-+ -.+.+-.+|....
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 467899999999999876554 7888999999976 3444456678889999998888775432 2233444444332
Q ss_pred eeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeee------CCCeEEEEeeCCC
Q 024407 209 KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG------EDGYVRLHHFDPD 262 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs------~Dg~i~i~~~~~~ 262 (268)
-..+.. ..+ ....-+.|+||++++.+.- .|..|+||++-+-
T Consensus 351 f~~~~~-----------~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 351 FKVAGA-----------FNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred eEEEEE-----------eec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 222111 111 2345578999999876543 3778999998654
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.72 E-value=2.7e-06 Score=67.84 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=104.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 167 (268)
.+++++.+.+..+.|++|=..|++.-+.+... ...........|..+|..+.|+...+.+++++.|..+...-.+++..
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~ 148 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR 148 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc
Confidence 34566667777778888878888877755321 00111223357999999999999999999999999987776776665
Q ss_pred eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEe
Q 024407 168 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 247 (268)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~las 247 (268)
+..+..+....++.+.-. + ...+... ..+. .++++.. ....+...++|.+.+.+++|.|..+.+.|
T Consensus 149 lg~Y~~~~~~t~~~~d~~--~-~fvGd~~-gqvt---------~lr~~~~-~~~~i~~~~~h~~~~~~l~Wd~~~~~LfS 214 (404)
T KOG1409|consen 149 LGGYNFETPASALQFDAL--Y-AFVGDHS-GQIT---------MLKLEQN-GCQLITTFNGHTGEVTCLKWDPGQRLLFS 214 (404)
T ss_pred ccceEeeccCCCCceeeE--E-EEecccc-cceE---------EEEEeec-CCceEEEEcCcccceEEEEEcCCCcEEEe
Confidence 555433322222222110 1 1111111 1111 1222221 12234457899999999999999999999
Q ss_pred eeCCCeEEEEeeCCCcce
Q 024407 248 GGEDGYVRLHHFDPDYFN 265 (268)
Q Consensus 248 gs~Dg~i~i~~~~~~~~~ 265 (268)
|..|..+-+|++...-++
T Consensus 215 g~~d~~vi~wdigg~~g~ 232 (404)
T KOG1409|consen 215 GASDHSVIMWDIGGRKGT 232 (404)
T ss_pred ccccCceEEEeccCCcce
Confidence 999999999999877544
No 262
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.71 E-value=9.1e-05 Score=70.44 Aligned_cols=170 Identities=11% Similarity=0.076 Sum_probs=100.1
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeecc-----cccC------cccceEEEEEcCCCCE-EEEeeCCCcE
Q 024407 91 INRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESD-----KETG------HKKTITSLAKAADGSH-FLTGSLDKSA 157 (268)
Q Consensus 91 v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~------h~~~v~~v~~s~~~~~-l~s~~~d~~i 157 (268)
-..++++|+ +..+++.+.++.|++||..++....... ...+ .-.....+++++++.. +++-+.+++|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 357899995 5566777889999999998765421100 0001 1124567899999884 4566678999
Q ss_pred EEEECCCcceeeee-------------ec---------CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEee
Q 024407 158 KLWDARTLELIKTY-------------VT---------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 215 (268)
Q Consensus 158 ~iwd~~~~~~~~~~-------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 215 (268)
++||++++...... .. -.....+++++++. ++++ ......|..+|...+......-
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVA-Ds~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVA-DSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEE-ECCCCEEEEEECCCCeEEEEec
Confidence 99999875431100 00 01234666777654 3333 2334456666665544332110
Q ss_pred ehhhhh-hhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 216 DKILQE-EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 216 ~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
....+- .-....+.......++++++|+.+++-+.++.|++|+++..
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 000000 00001223335678999999999998889999999998765
No 263
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.63 E-value=5.5e-07 Score=78.41 Aligned_cols=248 Identities=13% Similarity=0.171 Sum_probs=124.7
Q ss_pred CCCCCEEEEeecCCcEEEeecCC-CcEEEEEecCCC--ceeeeeecC--CeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 3 QANSMTLITGSADQTAKLWNVET-GAQLFTFNFDSP--ARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~-~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
+|-|+-+|.|+.-|-. +-|+.. ++...-+.+-.+ +...+|++- ....+++..+- ..-+|.++. ...
T Consensus 33 ~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q-----kaiiwnlA~---ss~ 103 (1081)
T KOG0309|consen 33 NPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ-----KAIIWNLAK---SSS 103 (1081)
T ss_pred ccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-----hhhhhhhhc---CCc
Confidence 4555666666665543 555543 444444444333 445555542 22333332210 000111111 122
Q ss_pred CceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCce-eeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 78 GESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
...-..+.||+..|+++.|+|... .+++++-|..+..||+++... +... .........|++......+++.+..+
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~---~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST---SSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee---ecccccCceeeecccCcchhhhccCC
Confidence 334567889999999999999874 778999999999999987532 1111 11223344455554333344444444
Q ss_pred cEEEEECCCccee-e---------------------------------------------eeecCCceeEEEEccCCCeE
Q 024407 156 SAKLWDARTLELI-K---------------------------------------------TYVTERPVNAVTMSPLLDHV 189 (268)
Q Consensus 156 ~i~iwd~~~~~~~-~---------------------------------------------~~~~~~~~~~~~~~~~~~~~ 189 (268)
-|++||+|.+... . .+....++..-.+.|.++..
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 4555555543211 1 11112223333344444333
Q ss_pred EEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC----------CeEEeeeCCCeEEEEee
Q 024407 190 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG----------KSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 190 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~----------~~lasgs~Dg~i~i~~~ 259 (268)
.+-...+...+-..+-+....+.+.++. .+.+....||.+.|...-|...+ -.|+|=|.|.++|+|.+
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~--~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDL--NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccC--CcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 2222111112212111111111112221 23456678898887666554322 24999999999999999
Q ss_pred CCCcc
Q 024407 260 DPDYF 264 (268)
Q Consensus 260 ~~~~~ 264 (268)
++...
T Consensus 339 ~~~i~ 343 (1081)
T KOG0309|consen 339 DSQIQ 343 (1081)
T ss_pred cHHHH
Confidence 87643
No 264
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.62 E-value=1.5e-05 Score=62.38 Aligned_cols=166 Identities=16% Similarity=0.271 Sum_probs=94.6
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEec--------CCCceeeeeecCC-------eEEEEEcCCCcccccceE
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNF--------DSPARSVDFAVGD-------KLAVITTDPFMELNSAIH 65 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~--------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 65 (268)
.||||+.+||-+...|+|+++|+.. ..+..+.. ...+..+.|..-. .++++. ..+.++
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~------Y~G~L~ 122 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN------YRGQLR 122 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe------ccceee
Confidence 3899999999999999999999875 33333321 1222233222110 011110 011111
Q ss_pred eeeeeeCCCCCCCceEEE--Eec-CCCCeEEEEEcCCCCEEEEEeCC-C----------cEEEEECCCCceeee------
Q 024407 66 VKRIARDPADQGGESVLI--LKG-PQGRINRAVWGPLNRTIISAGED-A----------IVRIWDTETGKLLKE------ 125 (268)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~s~~~d-g----------~i~iwd~~~~~~~~~------ 125 (268)
...+... ..+.....+. +.. +...|+++.++|..+.|+.||.. . -+.-|.+-++.+...
T Consensus 123 Sy~vs~g-t~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~ 201 (282)
T PF15492_consen 123 SYLVSVG-TNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSE 201 (282)
T ss_pred eEEEEcc-cCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccC
Confidence 1111000 0111222222 333 46789999999999988777632 1 244555433211100
Q ss_pred --------------cc------cccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecC
Q 024407 126 --------------SD------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 174 (268)
Q Consensus 126 --------------~~------~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 174 (268)
+. ....-+..|..|..||||+.|++...+|.|.+|++-+.+..+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 202 DDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 00 00112457889999999999999999999999999887776666543
No 265
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.61 E-value=2.6e-06 Score=76.62 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=109.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcc-cceEEEEEcCCCCEEEEeeCCCcEEEEECCCcc-e
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-L 167 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~-~ 167 (268)
.|....+..+.+.++.+..++.+-+||...+.........+... ....-+.++++.-++++++.-+.|.+|++.-.+ .
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 34444555566788999999999999998776655443221111 112223456777789999999999999987322 2
Q ss_pred eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEe
Q 024407 168 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 247 (268)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~las 247 (268)
+....++..+..+.++.++.+++..+.+. .+..|+..+..... ...-+|+..|+.+.|+|+ +++|
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDR--siRlW~i~s~~~~~-----------~~~fgHsaRvw~~~~~~n--~i~t 233 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGRYIASVSDDR--SIRLWPIDSREVLG-----------CTGFGHSARVWACCFLPN--RIIT 233 (967)
T ss_pred ceecccCCceEEEEEccCCcEEEEEecCc--ceeeeecccccccC-----------cccccccceeEEEEeccc--eeEE
Confidence 33345777889999998887776654433 34455443332211 245689999999999998 9999
Q ss_pred eeCCCeEEEEeeCCCc
Q 024407 248 GGEDGYVRLHHFDPDY 263 (268)
Q Consensus 248 gs~Dg~i~i~~~~~~~ 263 (268)
+++|.+.|+|+.+...
T Consensus 234 ~gedctcrvW~~~~~~ 249 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGTQ 249 (967)
T ss_pred eccceEEEEEecccce
Confidence 9999999999877654
No 266
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.61 E-value=3.8e-07 Score=86.23 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=109.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~ 165 (268)
-+-..|.++.=+|...+.+||++||.|++|.-..++.+..... .+ ++.|+.+.|+.+|+-+..+-.||.+-+|-....
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cC-cchhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 3445677777788888999999999999999888777665542 23 388999999999999999999999999987622
Q ss_pred ceeeeee-cCCceeEEEEccCCCeEEE-eecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC
Q 024407 166 ELIKTYV-TERPVNAVTMSPLLDHVVL-GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 243 (268)
Q Consensus 166 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 243 (268)
....+. ++.......|- +..++. +-+.++..+..||........ .+. ..|...++++++-|..+
T Consensus 2284 -~~~s~qchnk~~~Df~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~~s---------~v~--~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2284 -PYTSWQCHNKALSDFRFI--GSLLATAGRSSDNRNVCLWDTLLPPMNS---------LVH--TCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred -ceeccccCCccccceeee--ehhhhccccCCCCCcccchhcccCcccc---------eee--eecCCCceEEEEcCcce
Confidence 111111 12222222222 111111 123344445555543221111 111 57889999999999999
Q ss_pred eEEeeeCCCeEEEEeeCCC
Q 024407 244 SFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 244 ~lasgs~Dg~i~i~~~~~~ 262 (268)
.|+|||.+|.|.+|+++.-
T Consensus 2350 llisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred EEEecCCcCcEEEeehHHH
Confidence 9999999999999998754
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.61 E-value=6.9e-05 Score=62.05 Aligned_cols=199 Identities=9% Similarity=0.030 Sum_probs=110.6
Q ss_pred CCCCCCEEEEee-c-CCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGS-A-DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s-~-D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
+||||+.|+.+. . +..|-+.|+++++.+..+...........+....+ +.+.++.. ....+..... ....
T Consensus 112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~-~~~~Dg~~------~~v~~d~~g~-~~~~ 183 (352)
T TIGR02658 112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF-MHCRDGSL------AKVGYGTKGN-PKIK 183 (352)
T ss_pred ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE-EEeecCce------EEEEecCCCc-eEEe
Confidence 689999999776 3 69999999999999888875433222222222222 21222111 1100000000 0000
Q ss_pred eEEEEecCCCCeE-EEEEcC-CCCEEEEEeCCCcEEEEECCCCc-----eeeecccc----cCcccceEEEEEcCCCCEE
Q 024407 80 SVLILKGPQGRIN-RAVWGP-LNRTIISAGEDAIVRIWDTETGK-----LLKESDKE----TGHKKTITSLAKAADGSHF 148 (268)
Q Consensus 80 ~~~~~~~~~~~v~-~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~----~~h~~~v~~v~~s~~~~~l 148 (268)
....+.+...++. ...|.+ +|+++..... |.|.+.|+.... .+..+... .-.+....-+++++++..+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 0011111011110 113455 7777766555 999999964432 22111100 0123334448999999988
Q ss_pred EEee----------CCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCe
Q 024407 149 LTGS----------LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 209 (268)
Q Consensus 149 ~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 209 (268)
..+. ..++|-++|.++++.+..+.....+..++++|+++..+.........+...|...+.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 8743 225899999999999999888888999999999883443333333345555655444
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=5.2e-05 Score=64.94 Aligned_cols=177 Identities=9% Similarity=-0.013 Sum_probs=101.9
Q ss_pred CCCCCCE-EEEeecC---CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQANSMT-LITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~d~~~-l~s~s~D---~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
||||++. ++-.+.+ ..|.++|+.+++........+......|+|++..++...+.. ...+++.+.. .+
T Consensus 195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl----~~ 266 (419)
T PRK04043 195 WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDT----NT 266 (419)
T ss_pred ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC----CCcEEEEEEC----CC
Confidence 8999984 5544443 568888998887655444455556677898765443332211 1222332221 12
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEe-CCC--cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAG-EDA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
++ ...+..+........|+|||+.|+-.+ ..+ .|.++|+.+++..+... .+. . ...++|||..++-.+..
T Consensus 267 g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--~g~--~--~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 267 KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--HGK--N--NSSVSTYKNYIVYSSRE 339 (419)
T ss_pred Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--CCC--c--CceECCCCCEEEEEEcC
Confidence 22 222322222234568999998776554 333 57788888776533211 111 1 24799999988766543
Q ss_pred ---------CcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeec
Q 024407 155 ---------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 194 (268)
Q Consensus 155 ---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (268)
..|.+.|+.+++. ..+..........|+|++..++....
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEEc
Confidence 2678888887754 33332223345779999887776543
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.60 E-value=2.6e-05 Score=60.42 Aligned_cols=155 Identities=14% Similarity=-0.019 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceee
Q 024407 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 169 (268)
Q Consensus 91 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 169 (268)
+.++.++++++++++.+....|..|.+..... +... ........-.+..|+.....+|+++.||++.|||.|......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 78899999999999999999999998875321 1111 111123334567788999999999999999999999753221
Q ss_pred ee------ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccc-cceEEEEECCCC
Q 024407 170 TY------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF-GPINALAFNPDG 242 (268)
Q Consensus 170 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~ 242 (268)
.. .+...+..+.|++-+..-++-.+.....+...|.|.+.-.......... ...|. ..+..-.|+.++
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~-----~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV-----ERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc-----cccccccccccccccCCC
Confidence 11 1345677777887544322222333344556666655433222111000 11232 236677787777
Q ss_pred CeEEeeeCC
Q 024407 243 KSFSSGGED 251 (268)
Q Consensus 243 ~~lasgs~D 251 (268)
..+.+.+++
T Consensus 315 ~s~~v~~e~ 323 (344)
T KOG4532|consen 315 ESNDVKNEL 323 (344)
T ss_pred cccccccch
Confidence 665555544
No 270
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=7.5e-08 Score=76.58 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=60.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEEEEC
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-----LLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iwd~ 162 (268)
+.|.++.|...++.+..|+..|.|..+|++.+. ....+ -|.+.|+++.... ++.+|++.+.+|+|++||+
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl----yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL----YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE----EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 456677788888999999999999999998751 11122 3889999997766 7889999999999999999
Q ss_pred CCcce
Q 024407 163 RTLEL 167 (268)
Q Consensus 163 ~~~~~ 167 (268)
|..++
T Consensus 329 R~~K~ 333 (425)
T KOG2695|consen 329 RATKC 333 (425)
T ss_pred hhhhc
Confidence 97655
No 271
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.2e-05 Score=66.57 Aligned_cols=117 Identities=19% Similarity=0.277 Sum_probs=72.0
Q ss_pred cccceEEEEEcCCCCEEEEeeC---CCcEEEEECCC----cceeeeeecCCceeEEEEccCCCeEEEeecCC-CceEEEe
Q 024407 132 HKKTITSLAKAADGSHFLTGSL---DKSAKLWDART----LELIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTTT 203 (268)
Q Consensus 132 h~~~v~~v~~s~~~~~l~s~~~---d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~ 203 (268)
-...|...+|.|.|+.+++.+. -.++.+|-+.+ .+.+.++. ...++.+.|+|-|..+++++-.. .+.
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~---- 518 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGD---- 518 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccc----
Confidence 4567888999999998876544 34688887763 12333332 24678899999988877664321 122
Q ss_pred ccCCCeeeeEeeehhhhhh-hccccccccceEEEEECCCCCeEEeeeCC------CeEEEEeeCCC
Q 024407 204 DHRAGKFEAKFFDKILQEE-IGGVKGHFGPINALAFNPDGKSFSSGGED------GYVRLHHFDPD 262 (268)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~sp~~~~lasgs~D------g~i~i~~~~~~ 262 (268)
..+++...... ......|. .-+.+.|.|.|+|++|++.- .-.+||.+++.
T Consensus 519 --------l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 519 --------LEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred --------eEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 22333221110 01112343 35779999999999998863 34577777764
No 272
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=4.9e-06 Score=70.29 Aligned_cols=151 Identities=21% Similarity=0.366 Sum_probs=99.4
Q ss_pred cEEEeecCCCcEEEEEecCCCceeeeeecCCe-EEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEE
Q 024407 17 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 95 (268)
Q Consensus 17 tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 95 (268)
++.+.+++..+..+.+.-.+||+++.|++.+. ++++.. .+-..+.+.++ .++++..+ ..++-+.+-
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG----fMPAkvtifnl-------r~~~v~df--~egpRN~~~ 318 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYG----FMPAKVTIFNL-------RGKPVFDF--PEGPRNTAF 318 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEe----cccceEEEEcC-------CCCEeEeC--CCCCccceE
Confidence 67777777556666666789999999999664 444432 12223333322 23444443 456778899
Q ss_pred EcCCCCEEEEEeCC---CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC------CCcEEEEECCCcc
Q 024407 96 WGPLNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLE 166 (268)
Q Consensus 96 ~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~------d~~i~iwd~~~~~ 166 (268)
|+|.|++|+.+|.+ |.+.|||+.+.+.+..+.. ..-+-++|+|||++++||+. |+.++||+-.. .
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~ 392 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-S 392 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-c
Confidence 99999999888754 7899999999777665532 22344689999999999876 78899998653 3
Q ss_pred eeeeeecCCceeEEEEccCC
Q 024407 167 LIKTYVTERPVNAVTMSPLL 186 (268)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~ 186 (268)
.+.....+.....+.|.|..
T Consensus 393 ~l~~~~f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 393 LLHEKMFKSELLQVEWRPFN 412 (566)
T ss_pred eeehhhhhHhHhheeeeecC
Confidence 33322222235566666643
No 273
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=4.6e-07 Score=75.16 Aligned_cols=167 Identities=21% Similarity=0.273 Sum_probs=118.6
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC--CCEEEEeeCCCcEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKL 159 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~i 159 (268)
..|.+|.+.|+.+.|+..|..+++||.|..|.+||...++....+. .+|..-|....|-|. ...+++++.||.+++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~--SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE--SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc--cccccchhhhhccCCCCCcCceeccccCceee
Confidence 4578899999999999999999999999999999998877655443 578777777777763 456899999999987
Q ss_pred EECCC-cceeee---eecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc---c
Q 024407 160 WDART-LELIKT---YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG---P 232 (268)
Q Consensus 160 wd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~---~ 232 (268)
=.+-. +.+..+ -.+..++..++.-|...+.+.++|.++. +...|.+.+.-..++.-+ ..+.. .
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~-v~~~Dlr~~~pa~~~~cr---------~~~~~~~v~ 283 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV-VFHIDLRQDVPAEKFVCR---------EADEKERVG 283 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccc-eeeeeeccCCccceeeee---------ccCCcccee
Confidence 76543 222211 1356678888888887777777776654 344455444322222211 11222 4
Q ss_pred eEEEEECCCCC-eEEeeeCCCeEEEEeeC
Q 024407 233 INALAFNPDGK-SFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 233 v~~~~~sp~~~-~lasgs~Dg~i~i~~~~ 260 (268)
..+++..|-.. ++|+|+.|.++|+|.-+
T Consensus 284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R 312 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQFARVYDQR 312 (559)
T ss_pred eeeEecCCCCccccccCChhhhhhhhccc
Confidence 67889999765 79999999999998654
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.53 E-value=9.6e-06 Score=68.90 Aligned_cols=102 Identities=24% Similarity=0.281 Sum_probs=85.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~ 165 (268)
.|-+.|+++.++.+-..|.+++.|+.+..|+....+.++..+ +.+..+.++.++||+..+++|+ ++|++||+.+.
T Consensus 100 ~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k 174 (541)
T KOG4547|consen 100 KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK 174 (541)
T ss_pred CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcCCCCEEEecc--ceEEEEEccCc
Confidence 578899999999888899999999999999999988877655 3566788899999999999987 78999999999
Q ss_pred ceeeeee-cCCceeEEEEccC-----CCeEEEe
Q 024407 166 ELIKTYV-TERPVNAVTMSPL-----LDHVVLG 192 (268)
Q Consensus 166 ~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~ 192 (268)
+.+.++. +..+++++.|... +.+++.+
T Consensus 175 evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 175 EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred eEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence 9998885 4567888887655 4555544
No 275
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.51 E-value=1.4e-06 Score=77.53 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=98.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC---------CCcEEEEECCCcceee
Q 024407 99 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---------DKSAKLWDARTLELIK 169 (268)
Q Consensus 99 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~ 169 (268)
+++.+.+|...|+|.+-|+++.+.++.+. +|++.+.+++. .|+.|++|+. |..|++||+|..+.+.
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~---aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~ 260 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFD---AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS 260 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeee---ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccC
Confidence 56889999999999999999988887765 79999987654 5889999865 7788999999887766
Q ss_pred eeecCCceeEEEEccCCCeEEEeecCC-CceEEE----eccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCe
Q 024407 170 TYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTT----TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244 (268)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~----~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 244 (268)
.+.......-+.++|.....++..+.. ...+.. .+...+.+ ......+.+..+++|+.++.
T Consensus 261 PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~--------------~v~p~~s~i~~fDiSsn~~a 326 (1118)
T KOG1275|consen 261 PIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK--------------MVNPNGSGISAFDISSNGDA 326 (1118)
T ss_pred CcccccCchhhhhcccccceEEEEecccceeeccccccCCCcccee--------------EEccCCCcceeEEecCCCce
Confidence 655444456667777665544333222 111110 11111110 11112244889999999999
Q ss_pred EEeeeCCCeEEEEe
Q 024407 245 FSSGGEDGYVRLHH 258 (268)
Q Consensus 245 lasgs~Dg~i~i~~ 258 (268)
+|-|..+|.|.+|.
T Consensus 327 lafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 327 LAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccCcEeeec
Confidence 99999999999997
No 276
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.50 E-value=0.00027 Score=55.41 Aligned_cols=176 Identities=14% Similarity=0.161 Sum_probs=100.2
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccccc----CcccceEEEEEcCC------CCEEEEeeCC
Q 024407 85 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAAD------GSHFLTGSLD 154 (268)
Q Consensus 85 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~h~~~v~~v~~s~~------~~~l~s~~~d 154 (268)
++....=..++|+||+..|+.+...|+|++||+...... .+.... .-...|..+.|.+. ...|+....+
T Consensus 40 kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~ 118 (282)
T PF15492_consen 40 KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR 118 (282)
T ss_pred CCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEecc
Confidence 344455678999999999999999999999999854322 222111 11234555655532 2357777788
Q ss_pred CcEEEEECC-----Ccceeeeee----cCCceeEEEEccCCCeEEEeecCCCc---------eEEEeccCCCeeeeE---
Q 024407 155 KSAKLWDAR-----TLELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDAS---------AVTTTDHRAGKFEAK--- 213 (268)
Q Consensus 155 ~~i~iwd~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~~d~~~~~~~~~--- 213 (268)
|.++=|=+- ..+....+. -+..+.++.++|.+..+++++-.... -+..|..-.+.--.+
T Consensus 119 G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 119 GQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred ceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence 877766531 112222221 23468889999977655554322111 122232111100000
Q ss_pred ee-ehhh--h--------hhhccc---cccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 214 FF-DKIL--Q--------EEIGGV---KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 214 ~~-~~~~--~--------~~~~~~---~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
-. +... . ...+-. ....+.|..+.+||||+.||+...+|.|-+|++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 00 0000 0 000000 01235799999999999999999999999999863
No 277
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.46 E-value=0.00038 Score=54.82 Aligned_cols=185 Identities=19% Similarity=0.239 Sum_probs=109.9
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
++++.+++++.++.+..||+.+|+.++.+....++....
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~----------------------------------------- 72 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP----------------------------------------- 72 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-----------------------------------------
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-----------------------------------------
Confidence 366778888899999999999998888776533321110
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccccc--CcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
...+..++.++.++.++.+|.++|+......... ... .........++..++.+..++.|..+|
T Consensus 73 -------------~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 73 -------------VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALD 138 (238)
T ss_dssp -------------EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEE
T ss_pred -------------eecccccccccceeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEe
Confidence 0113456667788899999999998876632111 111 111222223477888888899999999
Q ss_pred CCCcceeeeeecCCce------------eEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccc
Q 024407 162 ARTLELIKTYVTERPV------------NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 229 (268)
Q Consensus 162 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h 229 (268)
+++++.+-......+. ....+. ++.++++.... ..+.. |...+... |...
T Consensus 139 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g-~~~~~-d~~tg~~~---w~~~----------- 200 (238)
T PF13360_consen 139 PKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DGRVYVSSGDG-RVVAV-DLATGEKL---WSKP----------- 200 (238)
T ss_dssp TTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TTEEEEECCTS-SEEEE-ETTTTEEE---EEEC-----------
T ss_pred cCCCcEEEEeecCCCCCCcceeeecccccceEEE--CCEEEEEcCCC-eEEEE-ECCCCCEE---EEec-----------
Confidence 9999887766442211 111222 23444443333 23333 66666522 2110
Q ss_pred ccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 230 FGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 230 ~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
...+..+ ..+++..++.++.|+.+.+++....
T Consensus 201 ~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 201 ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp SS-ECEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence 1112221 3367777887789999999987754
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.45 E-value=5.3e-06 Score=63.88 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=60.2
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEEEECCC
Q 024407 89 GRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 89 ~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iwd~~~ 164 (268)
..|++++-+|..+ .+++|+.||.+-+||++....... ....|+++++.+-|+| +++.|++++.||.+-.||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S--~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS--LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH--HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3488899999775 556788999999999988643322 3357999999999997 678999999999999999764
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=2.5e-06 Score=74.27 Aligned_cols=162 Identities=12% Similarity=0.163 Sum_probs=116.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee------------ecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK------------ESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------------~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
+....++.|+....++++||.||.+++..+.+...-. .-+...||...|..+.|..+...|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3457889999999999999999999999877632211 1112368999999999998888899999999
Q ss_pred cEEEEECCCcceeeeeec---CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 156 SAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 156 ~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
-|.+|.+-.++....... ...+.+++|+.+|..+.+.-.++...+...|.. +.|.+. +++. .
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN------RIwgKe-------Lkg~--~ 158 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN------RIWGKE-------LKGQ--L 158 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc------eecchh-------cchh--e
Confidence 999999887754333222 234678889998887777655555444444431 233321 1221 2
Q ss_pred eEEEEECCCCCeEEeeeCCCeEEEEeeCCCcc
Q 024407 233 INALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 264 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~ 264 (268)
...+.||||.+.+.-+-++|.+.+++.++++.
T Consensus 159 l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~ 190 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKANGETHLYDNQGNFE 190 (1189)
T ss_pred ccceeecccHHHHHhhhcCCcEEEecccccHH
Confidence 44689999999888888999999999987653
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=0.00015 Score=62.21 Aligned_cols=143 Identities=14% Similarity=0.100 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEE-eeC--CCcEEEEEC
Q 024407 90 RINRAVWGPLNRT-IISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSL--DKSAKLWDA 162 (268)
Q Consensus 90 ~v~~~~~~~~~~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s-~~~--d~~i~iwd~ 162 (268)
......|+|+|+. ++..+.+ ..|.++|+.+++...-.. .+..+....|+|||..++. .+. +..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 6678999999985 5544433 568899998876533221 2344556789999987653 333 346888888
Q ss_pred CCcceeeeeecCCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC
Q 024407 163 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241 (268)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 241 (268)
.+++...-...+.......|+|++..+++.....+ ..+...|...+......+ .+. ....||||
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-----------~g~----~~~~~SPD 329 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-----------HGK----NNSSVSTY 329 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-----------CCC----cCceECCC
Confidence 77754322112222334579999988877664432 245555544433321110 111 12489999
Q ss_pred CCeEEeeeCC
Q 024407 242 GKSFSSGGED 251 (268)
Q Consensus 242 ~~~lasgs~D 251 (268)
|++||-.+..
T Consensus 330 G~~Ia~~~~~ 339 (419)
T PRK04043 330 KNYIVYSSRE 339 (419)
T ss_pred CCEEEEEEcC
Confidence 9998766543
No 281
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.41 E-value=2.1e-05 Score=67.30 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=62.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~ 165 (268)
.....|.+++++|+.+.++.|+.||+|.+||...+..... .+.-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 3566889999999999999999999999999977633221 13345778999999999999999999999998754
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.41 E-value=0.0006 Score=57.22 Aligned_cols=133 Identities=22% Similarity=0.236 Sum_probs=88.0
Q ss_pred CCCCCEEEEeecCC-cEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 3 QANSMTLITGSADQ-TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 3 s~d~~~l~s~s~D~-tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
..+...++.|..|| .+-++|..+++..+....-+.+..+.++++++.++++++.+ .+|-+.- .++...
T Consensus 368 ~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~-------el~vidi----dngnv~ 436 (668)
T COG4946 368 QVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF-------ELWVIDI----DNGNVR 436 (668)
T ss_pred ccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCce-------EEEEEEe----cCCCee
Confidence 44566788888998 89999998887555444456688899999888888877642 2232221 222222
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAG----EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT 150 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s 150 (268)
..-+-.-+-|+..+|+|++++++-+- ....|+++|+..++...... ..+|. .+-+|.||+.+|.-
T Consensus 437 ~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~D---fsPaFD~d~ryLYf 505 (668)
T COG4946 437 LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYD---FSPAFDPDGRYLYF 505 (668)
T ss_pred EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccccc---cCcccCCCCcEEEE
Confidence 22223346789999999999998664 45679999999987654321 12222 23467889987643
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=4.7e-06 Score=72.66 Aligned_cols=217 Identities=15% Similarity=0.199 Sum_probs=129.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+.++.+++.||.||.+|+-.+.+.+.-...+ .++..+ +-..-
T Consensus 22 WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~--------------glaa~s-----------------------nLsmN 64 (1189)
T KOG2041|consen 22 WNKESGYIACGGADGLLKVLKLGTDTTDLNKS--------------GLAAAS-----------------------NLSMN 64 (1189)
T ss_pred EcccCCeEEeccccceeEEEEccccCCccccc--------------cccccc-----------------------ccchh
Confidence 67788999999999999988876543311110 011111 00112
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
+.+.||+..|.-++|+...+.|-|...+|.|.+|=+-.+.....+. .....+-|.++.|..||..++.+..||.|.+=.
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 3578999999999999999999999999999999887775443332 234567899999999999999999999987766
Q ss_pred CCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc----ccccccceEEEE
Q 024407 162 ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG----VKGHFGPINALA 237 (268)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~ 237 (268)
+...+.-.+-.......-+.|+++...+++.-.. +.+...|.. |.+..++ ...+... .......+-.+.
T Consensus 144 vdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~an--ge~hlydnq-gnF~~Kl----~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 144 VDGNRIWGKELKGQLLAHVLWSEDLEQALFKKAN--GETHLYDNQ-GNFERKL----EKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred eccceecchhcchheccceeecccHHHHHhhhcC--CcEEEeccc-ccHHHhh----hhceEEeeeeeecCCCcccccee
Confidence 6543322211111223456677765544432211 122222211 1111110 0000000 000001122232
Q ss_pred E--------CCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 238 F--------NPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 238 ~--------sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
| -||...||.+-..|.++|.|-.++.
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 2 2688889999999999998776654
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.37 E-value=1.1e-05 Score=65.67 Aligned_cols=156 Identities=13% Similarity=0.068 Sum_probs=89.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEE---EEeeCCCcEEEEECCCccee
Q 024407 92 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF---LTGSLDKSAKLWDARTLELI 168 (268)
Q Consensus 92 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l---~s~~~d~~i~iwd~~~~~~~ 168 (268)
.....+|.++.++.+..+....+++++.......+.....-+..-+++.+..+.... -.++....+.+|....+.+.
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 445677888899888888887777776543211111000111222333333333332 23455555666665555555
Q ss_pred eeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc-ccccccceEEEEECCCCCeEEe
Q 024407 169 KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALAFNPDGKSFSS 247 (268)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~las 247 (268)
..+.+-.-+..+.++|++..++.+ ..+...-..+- ...+ .+.. .-||+..|..+++-++ +.|+|
T Consensus 146 ~~lGhvSml~dVavS~D~~~Iita-DRDEkIRvs~y------pa~f-------~IesfclGH~eFVS~isl~~~-~~LlS 210 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITA-DRDEKIRVSRY------PATF-------VIESFCLGHKEFVSTISLTDN-YLLLS 210 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEe-cCCceEEEEec------Cccc-------chhhhccccHhheeeeeeccC-ceeee
Confidence 555555567889999987655554 33322211111 1100 0111 2479999999999764 55899
Q ss_pred eeCCCeEEEEeeCCC
Q 024407 248 GGEDGYVRLHHFDPD 262 (268)
Q Consensus 248 gs~Dg~i~i~~~~~~ 262 (268)
||.|+++++|++.+.
T Consensus 211 ~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSG 225 (390)
T ss_pred cCCCCcEEEEecccC
Confidence 999999999998754
No 285
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.1e-06 Score=69.80 Aligned_cols=165 Identities=19% Similarity=0.180 Sum_probs=110.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-CCcEEEEECCCc
Q 024407 87 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTL 165 (268)
Q Consensus 87 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~iwd~~~~ 165 (268)
|...|+.+.-+. .+.+++++.||.++.|-...-.-+.-+...-+|-..+.+++.+.++-.+.|.+. |..++++|+.+.
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 444455443322 468899999999999965431222222233467888999999999999999777 999999999987
Q ss_pred ceeeeeecCCceeEEEEc--cCCC-eEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 166 ELIKTYVTERPVNAVTMS--PLLD-HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
..+..+........+.|. +.+. ..++.+..+...+...|.+........++ .-|.++|.++.+.|-+
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk----------klH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK----------KLHFSPVKKIRYNQAG 156 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec----------ccccCceEEEEeeccc
Confidence 766555444433344432 3211 13333444455566666654443322222 2488999999999999
Q ss_pred CeEEeeeCCCeEEEEeeCCC
Q 024407 243 KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 243 ~~lasgs~Dg~i~i~~~~~~ 262 (268)
..++|....|.|.-|..+++
T Consensus 157 Ds~vSiD~~gmVEyWs~e~~ 176 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEGP 176 (558)
T ss_pred cceeeccccceeEeecCCCc
Confidence 99999999999999998863
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.36 E-value=0.00017 Score=67.46 Aligned_cols=232 Identities=13% Similarity=0.170 Sum_probs=123.1
Q ss_pred CCCCCCEEEEeec---C---CcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 2 FQANSMTLITGSA---D---QTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 2 fs~d~~~l~s~s~---D---~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
|=.||.+||+.+. + ..+|+|+-+ |.....-+ .++-...++|.|.+.+.+...- ......+.-..++ +
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~----~~~~~~VvFfErN-G 290 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR----LPDRHDVVFFERN-G 290 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE----cCCCcEEEEEecC-C
Confidence 6679999999987 2 589999976 55443333 2444568889997765444321 1111222212111 0
Q ss_pred CCCCceEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC-CEEEEe
Q 024407 75 DQGGESVLILK--GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTG 151 (268)
Q Consensus 75 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~ 151 (268)
..-++ ..++ .....|..+.|++++..|+....|. |.+|-..+..-.......-.....+..+.|+|.. ..|...
T Consensus 291 Lrhge--F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 291 LRHGE--FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred cEeee--EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence 11111 2232 3456789999999999998876555 9999887654322221111122334458899854 456677
Q ss_pred eCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 152 SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
+.++.+..+++.-.-....-..+.. .++...-+|..+.++. -+... .+. +=....+. -..
T Consensus 368 t~~g~~~~~~~~~~v~~s~~~~~~D-~g~vaVIDG~~lllTp-----------f~~a~-----VPP--PMs~~~l~-~~~ 427 (928)
T PF04762_consen 368 TSNGQYEIYDFAWDVSRSPGSSPND-NGTVAVIDGNKLLLTP-----------FRRAV-----VPP--PMSSYELE-LPS 427 (928)
T ss_pred ecCCcEEEEEEEEEEEecCCCCccC-ceEEEEEeCCeEEEec-----------ccccC-----CCc--hHhceEEc-CCC
Confidence 7667777666432111000000000 0000011112222211 11000 000 10111121 236
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+|++++|++++..+|.-..||.|.+|+++.+
T Consensus 428 ~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 428 PVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 7999999999887888899999999986544
No 287
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.35 E-value=0.00023 Score=57.19 Aligned_cols=191 Identities=14% Similarity=0.097 Sum_probs=113.1
Q ss_pred CCCCCCCEEEEeecC-----CcEEEeecC-CCcEEEEEecC-CCceeeeeecCCeEEEEEcCCCccc-c-cc--eEeeee
Q 024407 1 MFQANSMTLITGSAD-----QTAKLWNVE-TGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMEL-N-SA--IHVKRI 69 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D-----~tv~~wd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~~~~~~ 69 (268)
.||+||++|+|.=.| |.|-+||.. ..+.+-.+... -.++.+.+.|++..+++++.+...- + .. +....+
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 389999999996554 899999998 56666666543 3367788888887777776542110 0 00 000000
Q ss_pred ee---CCCCCCCceEEE--E--ecCCCCeEEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceeeeccc----ccC
Q 024407 70 AR---DPADQGGESVLI--L--KGPQGRINRAVWGPLNRTIISAGEDAI-------VRIWDTETGKLLKESDK----ETG 131 (268)
Q Consensus 70 ~~---~~~~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~----~~~ 131 (268)
.- -.+..+++.+.. + ..|+..|..+++.++|..++..=+.|. |-+++.. +...-+.- ...
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRR 214 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHh
Confidence 00 001223444333 4 347788999999998876655433332 2233322 21111110 012
Q ss_pred cccceEEEEEcCCCCEE-EEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCC
Q 024407 132 HKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 196 (268)
Q Consensus 132 h~~~v~~v~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (268)
-..++-+|+++.++..+ +|+-.-+.+.+||..+++.+...... .++.++-.+.+ ++++++.+
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~--f~~ssG~G 277 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG--FLVSSGQG 277 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc--eEEeCCCc
Confidence 34678999999998876 56667889999999999887765433 35555555443 55554443
No 288
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.3e-06 Score=68.08 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=102.6
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeeecccccCcccceEEEEEcCCC--CEEEEeeCCCcEEEEE
Q 024407 85 KGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG--SHFLTGSLDKSAKLWD 161 (268)
Q Consensus 85 ~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~~l~s~~~d~~i~iwd 161 (268)
..|.+.|.+++.+-++..+.|++. |..++++|+++-..+..++.. --+..+..+--..|. ..-++...++.+.++|
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD 128 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVD 128 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEEC
Confidence 345666667777778888888887 999999999875443322211 122333222111111 2334556788999999
Q ss_pred CCCcceeeee---ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee----eEeeehhhhhhhccccccccceE
Q 024407 162 ARTLELIKTY---VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE----AKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 162 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
.+..-+...+ .+-.++..+.+.|.++..+.. +-.+.+..|.... .+. ...|.......+.......+...
T Consensus 129 ~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi--D~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pt 205 (558)
T KOG0882|consen 129 GFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI--DISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPT 205 (558)
T ss_pred CcCCcCccceecccccCceEEEEeeccccceeec--cccceeEeecCCC-cccCccccccccccccchhhcccccccCcc
Confidence 8865432221 244577788888877655543 3344566665431 000 00111111111111222234567
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
++.|+|++..+++-+.|..||++.+.++.
T Consensus 206 s~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 206 SFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ceEEccccCcccccCcccEEEEEEeccch
Confidence 99999999999999999999999887764
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.32 E-value=0.00017 Score=56.15 Aligned_cols=154 Identities=12% Similarity=0.048 Sum_probs=94.8
Q ss_pred EEEeecCCcEEEeecCCCcEEEEEecC-CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE--EEe
Q 024407 9 LITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL--ILK 85 (268)
Q Consensus 9 l~s~s~D~tv~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 85 (268)
+.-++.|.|+|+.+++-+......... -....+.+++.+.+.....+.. .+-...+++ .++.+. .+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~-----~Vf~y~id~-----~sey~~~~~~a 200 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSR-----RVFRYAIDD-----ESEYIENIYEA 200 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCC-----cceEEEeCC-----ccceeeeeEec
Confidence 566889999999988755433222111 1245566666665544433321 111112221 122222 233
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeec--ccccCcccceEEEEEcCCCC--EEEEeeCCCcEEEEE
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES--DKETGHKKTITSLAKAADGS--HFLTGSLDKSAKLWD 161 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~h~~~v~~v~~s~~~~--~l~s~~~d~~i~iwd 161 (268)
..++.--+..|+.....++++.+||++.|||++.....+.. ...+.|.+.+..+.|++.|. .|...-.=+.+.+-|
T Consensus 201 ~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 201 PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 34455567889999999999999999999999875433211 11235888999999997654 344555567899999
Q ss_pred CCCcceeeeee
Q 024407 162 ARTLELIKTYV 172 (268)
Q Consensus 162 ~~~~~~~~~~~ 172 (268)
+|++...+.+.
T Consensus 281 ~R~~~~~q~I~ 291 (344)
T KOG4532|consen 281 TRNYVNHQVIV 291 (344)
T ss_pred cccCceeeEEe
Confidence 99987666554
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.28 E-value=1.2e-05 Score=61.89 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=87.1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceee-ecccccCcccceEEEEEcCCCCEEEEeeC-----CCcEEEEECCCcceee-e
Q 024407 98 PLNRTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDARTLELIK-T 170 (268)
Q Consensus 98 ~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~-~ 170 (268)
.-+..+++++.||.+-+++.+.-.... ++. .-|.. .-+..+...++.+.++.. -+..+.|+++-.+.+. .
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~--~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~ 175 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIP--SIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS 175 (319)
T ss_pred ccCCceEecCCCceEEEEechHHHhhhhhcc--ccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccc
Confidence 345688999999999999987521111 110 01111 111122223444433322 1234455554321111 0
Q ss_pred eecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC-CeEEeee
Q 024407 171 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGG 249 (268)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~lasgs 249 (268)
......+.+++-+|...+++++++.+ +.+..||.|...+.. ..++.|..+++.+-|+|.. ..|.+++
T Consensus 176 ~~~~~~v~~l~~hp~qq~~v~cgt~d-g~~~l~d~rn~~~p~-----------S~l~ahk~~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 176 KKALDAVTALCSHPAQQHLVCCGTDD-GIVGLWDARNVAMPV-----------SLLKAHKAEIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred ccccccchhhhCCcccccEEEEecCC-CeEEEEEcccccchH-----------HHHHHhhhhhhheeccCCCchheeEec
Confidence 11223477788889877777776555 567788877653322 2356788999999999965 6699999
Q ss_pred CCCeEEEEeeCC
Q 024407 250 EDGYVRLHHFDP 261 (268)
Q Consensus 250 ~Dg~i~i~~~~~ 261 (268)
+||.+.-|....
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999998777654
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=9e-06 Score=65.05 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=99.3
Q ss_pred EEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCC
Q 024407 10 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 89 (268)
Q Consensus 10 ~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (268)
++.+.+..|-+-|++++.+ .++.....|..++|+....++..++- .+.+-..++.... ...+.+.+.+ -|..
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcR-----ngeI~~iDLR~rn-qG~~~~a~rl-yh~S 299 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCR-----NGEIFVIDLRCRN-QGNGWCAQRL-YHDS 299 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEeccc-----CCcEEEEEeeecc-cCCCcceEEE-EcCc
Confidence 5677888888999988865 34556677888888875665554431 1222222332220 1112233333 3677
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceE--EEEEcCCCCEEEEeeCCCcEEEEECCCcc
Q 024407 90 RINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT--SLAKAADGSHFLTGSLDKSAKLWDARTLE 166 (268)
Q Consensus 90 ~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~--~v~~s~~~~~l~s~~~d~~i~iwd~~~~~ 166 (268)
.|+++..-. ++.+|++.+.+|+|++||++.-+.-..+...+||...-. -+...+.-..+++++.|-..++|.++.+.
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 888877655 678889999999999999987665222333346643211 12234445567889999999999999988
Q ss_pred eeeeeecC
Q 024407 167 LIKTYVTE 174 (268)
Q Consensus 167 ~~~~~~~~ 174 (268)
.+.++..+
T Consensus 380 Ll~tipf~ 387 (425)
T KOG2695|consen 380 LLCTIPFP 387 (425)
T ss_pred eeeccCCC
Confidence 77766543
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.25 E-value=0.00031 Score=59.53 Aligned_cols=149 Identities=19% Similarity=0.125 Sum_probs=82.3
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
.+..++.++.++.+..+|.++|+.++..+....+..-....+..+.+...++. +...+ ..+++.+...
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~------l~ald------~~tG~~~W~~ 131 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGE------VIALD------AEDGKELWRA 131 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCE------EEEEE------CCCCcEeeee
Confidence 45678889999999999999999998887655433211112333333222211 11111 1123333222
Q ss_pred ecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcc--cceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 85 KGPQGRINR-AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 85 ~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
... +.+.+ ... .++.++.++.++.+..||.++++.+.+........ ........ .+ ..++.+..++.+.-+|
T Consensus 132 ~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~-~~v~~~~~~g~v~ald 206 (377)
T TIGR03300 132 KLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-AD-GGVLVGFAGGKLVALD 206 (377)
T ss_pred ccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-EC-CEEEEECCCCEEEEEE
Confidence 111 11111 111 24567778889999999999998766543211000 00001111 12 4677788889999999
Q ss_pred CCCcceeee
Q 024407 162 ARTLELIKT 170 (268)
Q Consensus 162 ~~~~~~~~~ 170 (268)
+++++.+-.
T Consensus 207 ~~tG~~~W~ 215 (377)
T TIGR03300 207 LQTGQPLWE 215 (377)
T ss_pred ccCCCEeee
Confidence 998876543
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.23 E-value=0.0018 Score=54.92 Aligned_cols=225 Identities=15% Similarity=0.157 Sum_probs=114.3
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
++..++.++.|+.+..+|.++|+.++.......+.......++.+.+...++ .+...+. .+++.+...
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g------~l~a~d~------~tG~~~W~~ 171 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDG------RLTALDA------ATGERLWTY 171 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCC------eEEEEEc------CCCceeeEE
Confidence 5667888999999999999999998877654443221112233333322221 1111111 122222222
Q ss_pred ecCCCCe-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCc--c--cceEEEEEcC--CCCEEEEeeC
Q 024407 85 KGPQGRI-----NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH--K--KTITSLAKAA--DGSHFLTGSL 153 (268)
Q Consensus 85 ~~~~~~v-----~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--~--~~v~~v~~s~--~~~~l~s~~~ 153 (268)
+...... ..... .+..++.+..++.+..+|+++++.+.+....... . .....+.-+| .+..+..++.
T Consensus 172 ~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~ 249 (377)
T TIGR03300 172 SRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY 249 (377)
T ss_pred ccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc
Confidence 2111110 01111 1346778888999999999999765433211000 0 0000010011 2457778888
Q ss_pred CCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 154 DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
++.+..+|+++++.+-...... ...... .+..++++. ....+...|...+... |.... +.+. ..
T Consensus 250 ~g~l~a~d~~tG~~~W~~~~~~-~~~p~~--~~~~vyv~~--~~G~l~~~d~~tG~~~---W~~~~------~~~~--~~ 313 (377)
T TIGR03300 250 QGRVAALDLRSGRVLWKRDASS-YQGPAV--DDNRLYVTD--ADGVVVALDRRSGSEL---WKNDE------LKYR--QL 313 (377)
T ss_pred CCEEEEEECCCCcEEEeeccCC-ccCceE--eCCEEEEEC--CCCeEEEEECCCCcEE---Ecccc------ccCC--cc
Confidence 9999999999987655433211 111111 234444443 2234556666555432 22100 0010 11
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
.+... .+..++.++.||.+.+++.+.
T Consensus 314 ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 314 TAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred ccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 11122 356788889999998887653
No 294
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.23 E-value=0.00032 Score=61.65 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=88.0
Q ss_pred CCCCCCEE-EEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l-~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
++|||+.+ .+.-..+.+.+.|.++.+....+..+.....+++.+++..+.+.+... +.+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNs------------------E~G~t 261 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNS------------------EEGVT 261 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCc------------------ccCcc
Confidence 46788765 344455788888999888888887777777888888776665554210 11111
Q ss_pred EEEEecCCCCeEEEEE--------cCCCCEEEEEeCCCcEEEEECCC----C-ceeeecccccCcccceEEEEEcCCCCE
Q 024407 81 VLILKGPQGRINRAVW--------GPLNRTIISAGEDAIVRIWDTET----G-KLLKESDKETGHKKTITSLAKAADGSH 147 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~--------~~~~~~l~s~~~dg~i~iwd~~~----~-~~~~~~~~~~~h~~~v~~v~~s~~~~~ 147 (268)
+..+...... ..+.| .++|++... .++.|.+.|.++ + +....+. -......++++|||.+
T Consensus 262 l~em~a~e~d-~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP----VGKsPHGV~vSPDGky 334 (635)
T PRK02888 262 LAEMMAAERD-WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP----VPKNPHGVNTSPDGKY 334 (635)
T ss_pred eeeeccccCc-eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE----CCCCccceEECCCCCE
Confidence 1111111111 22223 356776654 367899999988 3 3333332 2345667899999999
Q ss_pred EEEee-CCCcEEEEECCCcc
Q 024407 148 FLTGS-LDKSAKLWDARTLE 166 (268)
Q Consensus 148 l~s~~-~d~~i~iwd~~~~~ 166 (268)
+++++ .+.++.++|+.+.+
T Consensus 335 lyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 335 FIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEEeCCCCCcEEEEEChhhh
Confidence 87665 58999999998754
No 295
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.20 E-value=0.00049 Score=57.74 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=101.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC-cEEEEECCCcceeeeeecCCce
Q 024407 99 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTERPV 177 (268)
Q Consensus 99 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~ 177 (268)
+|.+++..|. |.+.+.+.-.+-.+. + +|+..|.-..+..+++-++.+..|| .+-++|.++++.......-..+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq-v----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I 404 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ-V----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNI 404 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE-c----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccce
Confidence 3566666654 556666554443322 2 4677788788888888999999999 8999999998764433334568
Q ss_pred eEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCe----
Q 024407 178 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY---- 253 (268)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~---- 253 (268)
.++..+|+++.++++. +...++..|..++.... .+ +...+-|+..+|||++++||-+--+|.
T Consensus 405 ~av~vs~dGK~~vvaN--dr~el~vididngnv~~--id----------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~ 470 (668)
T COG4946 405 EAVKVSPDGKKVVVAN--DRFELWVIDIDNGNVRL--ID----------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQS 470 (668)
T ss_pred EEEEEcCCCcEEEEEc--CceEEEEEEecCCCeeE--ec----------ccccceeEEEEEcCCceeEEEecCcceeeee
Confidence 8899999988777653 34556666666655422 11 123356999999999999998888776
Q ss_pred EEEEeeCCC
Q 024407 254 VRLHHFDPD 262 (268)
Q Consensus 254 i~i~~~~~~ 262 (268)
|+++++++.
T Consensus 471 Iklydm~~~ 479 (668)
T COG4946 471 IKLYDMDGG 479 (668)
T ss_pred EEEEecCCC
Confidence 789998873
No 296
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.18 E-value=0.00036 Score=66.51 Aligned_cols=77 Identities=10% Similarity=0.092 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccc----------ccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 91 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
...++++|+|+.+++-+.++.|++||..++........ ..++-.....++++++|..+++-+.+++|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 35788999999888889999999999987654422110 01122356788999999999999999999999
Q ss_pred ECCCcce
Q 024407 161 DARTLEL 167 (268)
Q Consensus 161 d~~~~~~ 167 (268)
|+++++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9988764
No 297
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.13 E-value=0.0015 Score=61.36 Aligned_cols=170 Identities=16% Similarity=0.164 Sum_probs=98.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---------------CCcee--------eecc-------------c---
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTE---------------TGKLL--------KESD-------------K--- 128 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~---------------~~~~~--------~~~~-------------~--- 128 (268)
..+|.++.||||++.|+.+..++.+.+.+-. ..+.+ .++. .
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4578899999999988888888887776421 00010 0100 0
Q ss_pred --ccC---cccceEEEEEcCCCCEEEEeeC---C---CcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCC
Q 024407 129 --ETG---HKKTITSLAKAADGSHFLTGSL---D---KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQD 196 (268)
Q Consensus 129 --~~~---h~~~v~~v~~s~~~~~l~s~~~---d---~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 196 (268)
+.+ +...-..++|-.||.++++.+. + ..+|+|+.. |+...+-. ...--..++|.|.|..++..-...
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~ 278 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLP 278 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcC
Confidence 000 2234556788899999998764 3 478999855 43322111 112235678999887655543322
Q ss_pred CceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCcceec
Q 024407 197 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 267 (268)
Q Consensus 197 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~~~~ 267 (268)
.........|.|.-.-.| ... .......|..+.|++|+..||.--.|. |++|...+=+.-||
T Consensus 279 ~~~~VvFfErNGLrhgeF-~l~-------~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 279 DRHDVVFFERNGLRHGEF-TLR-------FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred CCcEEEEEecCCcEeeeE-ecC-------CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence 222222333333322111 100 011234689999999999999877665 99998775443443
No 298
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.08 E-value=0.00035 Score=54.98 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=95.5
Q ss_pred EEEEeCCCcEEEEECCCCceeeecccccCccc---ceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceee--ee-ecCCc
Q 024407 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TY-VTERP 176 (268)
Q Consensus 103 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~-~~~~~ 176 (268)
++-+-.+|.|.+|...-......+...++..- ...++.+++-+..+++.-.+|.+.+-+........ ++ .++.+
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence 44455667777775543222222222222221 24567788888889999999999866554332222 33 24556
Q ss_pred eeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC-CCCeEEeeeCCCeEE
Q 024407 177 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFSSGGEDGYVR 255 (268)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~lasgs~Dg~i~ 255 (268)
+....++..+..++.++|+++ .+..||.|... ...|. ..+-|...|.++.-+| +..+|+||+-|-.|+
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~-~l~~~D~R~p~--~~i~~--------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~ 236 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDG-SLSCWDIRIPK--TFIWH--------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIR 236 (339)
T ss_pred eeeeecccCCCceEEecCCCc-eEEEEEecCCc--ceeee--------cceeeecceEEEecCCCCCceEEEecccccee
Confidence 677777776677787777765 57788888433 11222 1345888999999886 678999999999999
Q ss_pred EEeeCC
Q 024407 256 LHHFDP 261 (268)
Q Consensus 256 i~~~~~ 261 (268)
+|+.++
T Consensus 237 ~~DtRn 242 (339)
T KOG0280|consen 237 VLDTRN 242 (339)
T ss_pred eeehhc
Confidence 999874
No 299
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.07 E-value=1.8e-05 Score=42.25 Aligned_cols=38 Identities=29% Similarity=0.643 Sum_probs=33.6
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 116 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 116 (268)
+++..+.+|...|+++.|+|.++.+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778899999999999999999999999999996
No 300
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.03 E-value=0.00016 Score=58.02 Aligned_cols=146 Identities=21% Similarity=0.285 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeeeccc-c--------cCcccceEEEEEcCCCC--EEEEee
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-----LLKESDK-E--------TGHKKTITSLAKAADGS--HFLTGS 152 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~-~--------~~h~~~v~~v~~s~~~~--~l~s~~ 152 (268)
.-|.++.|...|++|++|..+|.|.++.-.... ....++. + -.-...|..+.+.++++ +++..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 346788899999999999999999998543321 1111110 0 01234578888887654 688889
Q ss_pred CCCcEEEEECCCcceee-ee--ecCCc---eeEEE---EccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhh
Q 024407 153 LDKSAKLWDARTLELIK-TY--VTERP---VNAVT---MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI 223 (268)
Q Consensus 153 ~d~~i~iwd~~~~~~~~-~~--~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 223 (268)
.|.+|++|-++....-. .+ ..+.+ +..+. ..|....+. ... .+.+
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-----------a~p-------rRv~-------- 159 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-----------ASP-------RRVY-------- 159 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-----------eee-------eeec--------
Confidence 99999999887532211 00 01111 11110 111100000 000 0111
Q ss_pred ccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 224 GGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 224 ~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
-.+|+..|+++.++.|++.++|+. |=.|.+|+++.-.
T Consensus 160 --aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d 196 (433)
T KOG1354|consen 160 --ANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIID 196 (433)
T ss_pred --cccceeEeeeeeecCccceEeecc-ceeeeeccccccC
Confidence 146888999999999999998755 7889999987653
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.97 E-value=0.00011 Score=58.19 Aligned_cols=135 Identities=15% Similarity=0.211 Sum_probs=77.9
Q ss_pred cCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeee----ec-----CCceeEEEEccCCCeEEEeecCCCceE
Q 024407 130 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY----VT-----ERPVNAVTMSPLLDHVVLGGGQDASAV 200 (268)
Q Consensus 130 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i 200 (268)
..|+..+.++.+..|.+.++++ .|-.|.+|++.-...-..+ .+ ...+....|+|..-.+++.++.. +.|
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk-G~I 246 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK-GEI 246 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC-CcE
Confidence 3588889999998888877766 4678999988642211111 11 11356667888766666554333 345
Q ss_pred EEeccCCCeee---eEeeehh-hhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC---cceec
Q 024407 201 TTTDHRAGKFE---AKFFDKI-LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD---YFNIK 267 (268)
Q Consensus 201 ~~~d~~~~~~~---~~~~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~---~~~~~ 267 (268)
...|.|....- .+++... .+....-..+-.+.|..+.|+++|+|+++-+- -+++||+.+.+ .+||+
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 55565532211 1111110 00011111122346888999999999997553 58999998766 45554
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=0.0027 Score=56.56 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=88.3
Q ss_pred eeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCC------------CEEEEE
Q 024407 39 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN------------RTIISA 106 (268)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~s~ 106 (268)
..++|++++.++.+++.... .+.. .+-+.++.+.-|+..|+.+.|.|.. -.|+++
T Consensus 19 ~A~Dw~~~GLiAygshslV~----VVDs---------~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa 85 (1062)
T KOG1912|consen 19 NAADWSPSGLIAYGSHSLVS----VVDS---------RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA 85 (1062)
T ss_pred cccccCccceEEEecCceEE----EEeh---------hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEec
Confidence 45667777776665543211 1111 1224566677899999999998631 246677
Q ss_pred eCCCcEEEEECCCCceeeecccccCcccceEEEEEcC---CC-CEEEEeeCCCcEEEEECCCcceeeeeec-CCceeEEE
Q 024407 107 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA---DG-SHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVT 181 (268)
Q Consensus 107 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~---~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~ 181 (268)
.-.|.|.+||...+-.+..+. .|..++..+.|-+ ++ ..|++.....+|.+|+..+|+.+-++.- .....+..
T Consensus 86 D~~GrIil~d~~~~s~~~~l~---~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~ 162 (1062)
T KOG1912|consen 86 DISGRIILVDFVLASVINWLS---HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFR 162 (1062)
T ss_pred cccCcEEEEEehhhhhhhhhc---CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeee
Confidence 788999999999887665554 3566777777654 44 4566777788999999999887665432 23445567
Q ss_pred EccCCCe
Q 024407 182 MSPLLDH 188 (268)
Q Consensus 182 ~~~~~~~ 188 (268)
+.|.+..
T Consensus 163 ~DPfd~r 169 (1062)
T KOG1912|consen 163 VDPFDSR 169 (1062)
T ss_pred eCCCCcc
Confidence 7776543
No 303
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.82 E-value=0.004 Score=52.80 Aligned_cols=246 Identities=12% Similarity=0.106 Sum_probs=136.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCc--------ccc--cceEeeeeee
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM--------ELN--SAIHVKRIAR 71 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~ 71 (268)
|||-|.+|++...- -|.+|.-..+..+..+. +..+..+.|+|....+..-...-. ..+ +...+|++
T Consensus 40 ~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~-- 115 (561)
T COG5354 40 ESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDI-- 115 (561)
T ss_pred ecCcchheehhhcc-ceEEccccchhheeeee-cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEec--
Confidence 79999988877664 67899987776555554 355888889987766554432211 000 02233333
Q ss_pred CCCCCCCceEEEEecCCCC--eE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCE-
Q 024407 72 DPADQGGESVLILKGPQGR--IN-RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH- 147 (268)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~- 147 (268)
.++..+..+.+-..+ .. -+.|+-+.++++=. -...++|+++ ++..- ....-.-....+....++|.+++
T Consensus 116 ----~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFsisP~~n~~ 188 (561)
T COG5354 116 ----ASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE-EHPFKNLRPVGILDFSISPEGNHD 188 (561)
T ss_pred ----cCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc-cCchhhccccceeeEEecCCCCCc
Confidence 334455555544433 33 46677777765433 3345888987 43221 11100112356788888887543
Q ss_pred -EEE-----eeCCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh
Q 024407 148 -FLT-----GSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220 (268)
Q Consensus 148 -l~s-----~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 220 (268)
|+. .+...++++|.+-..+.+.+.. -...-..+.|.+.+.++++-.......-....... .+.++.- ..
T Consensus 189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges---nLyl~~~-~e 264 (561)
T COG5354 189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES---NLYLLRI-TE 264 (561)
T ss_pred eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccc---eEEEEee-cc
Confidence 332 3667889999887665544421 12234566788888776653221110000000001 1111111 12
Q ss_pred hhhccccccccceEEEEECCCCCeEEe--eeCCCeEEEEeeCCC
Q 024407 221 EEIGGVKGHFGPINALAFNPDGKSFSS--GGEDGYVRLHHFDPD 262 (268)
Q Consensus 221 ~~~~~~~~h~~~v~~~~~sp~~~~las--gs~Dg~i~i~~~~~~ 262 (268)
..++....-.++|...+|.|+++.|++ |-.+..+.++.++++
T Consensus 265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred cccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 222222244678999999999887664 447788888877766
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=4.8e-05 Score=64.74 Aligned_cols=173 Identities=18% Similarity=0.250 Sum_probs=114.0
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-----KLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
.++.+.||+..|..+.--.+.+.+++++.|++|++|.++.. ...+++ ....|+.+|.++.|..+-.++++ .|
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQf-TY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQF-TYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeee-EhhhccCcccceeeeeccceeee--cc
Confidence 35567799998887765556678999999999999998752 122222 34579999999999888776654 57
Q ss_pred CcEEEEECCCcceeeeeec---CCceeEEEEccC-CCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccc
Q 024407 155 KSAKLWDARTLELIKTYVT---ERPVNAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 230 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~ 230 (268)
+-|.+||+=-++.+..... +.....+..-++ +..+++++-.....+...|.|...+.... . +..-.+..
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~-k------Vcna~~Pn 876 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL-K------VCNAPGPN 876 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE-E------eccCCCCc
Confidence 8899999876655443321 122333333333 45556554333445666777766653221 1 11112344
Q ss_pred cceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 231 GPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 231 ~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+.+++..|.|+.+|.|=..|.|-+-+.++.
T Consensus 877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALSNGCIAILDARNG 908 (1034)
T ss_pred hheeEEEeccCcchhhHHhcCCcEEEEecCCC
Confidence 56889999999999999888888877666643
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=8.9e-05 Score=66.52 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=66.2
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc-
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS- 156 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~- 156 (268)
..+...++.|+...+|++|+-..++|+.|+..|.|++|++.+|.... ...+|.++|+.+.-+.||+.+++.+.-..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCc
Confidence 45566678899999999999999999999999999999999986433 34579999999998889888776554332
Q ss_pred -EEEEECC
Q 024407 157 -AKLWDAR 163 (268)
Q Consensus 157 -i~iwd~~ 163 (268)
.-+|++.
T Consensus 1168 lsaLW~~~ 1175 (1516)
T KOG1832|consen 1168 LSALWDAS 1175 (1516)
T ss_pred hHHHhccc
Confidence 4567664
No 306
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.76 E-value=4.9e-05 Score=40.41 Aligned_cols=32 Identities=47% Similarity=0.963 Sum_probs=28.7
Q ss_pred cccccceEEEEECCCCCeEEeeeCCCeEEEEe
Q 024407 227 KGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 227 ~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~ 258 (268)
..|...|.++.|+|++..+++|+.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35677899999999999999999999999984
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0027 Score=56.64 Aligned_cols=142 Identities=19% Similarity=0.247 Sum_probs=93.4
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecC-----CeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG-----DKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
+|.+++|||.||+|.+-.+.+.+....+....|+.+++++|. .+.++++....+.+. .+.+ .+.+
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~--------er~w--lgnk 151 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLS--------ERNW--LGNK 151 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEe--------hhhh--hcCc
Confidence 789999999999999999999999999999999999999985 233333322111110 0010 0111
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCccc-----ceEEEEEcCCCCEEEEeeCC
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-----TITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----~v~~v~~s~~~~~l~s~~~d 154 (268)
....+....++|.++.|. |.+++=+..+| |++||..+++.+..+... ++. --..+.|.++. .+..++.
T Consensus 152 ~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p--~~~~R~e~fpphl~W~~~~--~LVIGW~ 224 (846)
T KOG2066|consen 152 DSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPP--SQSVRPELFPPHLHWQDED--RLVIGWG 224 (846)
T ss_pred cceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCC--CCCCCcccCCCceEecCCC--eEEEecC
Confidence 111456678899999996 46777666655 899999998877655432 211 12334555443 3455677
Q ss_pred CcEEEEECC
Q 024407 155 KSAKLWDAR 163 (268)
Q Consensus 155 ~~i~iwd~~ 163 (268)
.+|++..++
T Consensus 225 d~v~i~~I~ 233 (846)
T KOG2066|consen 225 DSVKICSIK 233 (846)
T ss_pred CeEEEEEEe
Confidence 789999887
No 308
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.72 E-value=0.00034 Score=61.67 Aligned_cols=155 Identities=20% Similarity=0.320 Sum_probs=99.8
Q ss_pred eEEEEEcCCCC---EEEEEeCCCcEEEEECCCCc--eeeecccccCcccceEEEEEcCCC-CEEEEeeCCCcEEEEECCC
Q 024407 91 INRAVWGPLNR---TIISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 91 v~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~iwd~~~ 164 (268)
|-+..|+|... .+++.+. ....+|++.... .+.-+ .-+|...++.+-|.+.. ..+++++.|-.+..||+|+
T Consensus 70 vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~--lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFV--LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred hcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEE--EecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 55566776542 4444443 444588876532 22211 13789999999999754 5788999999999999997
Q ss_pred cc-eeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC-
Q 024407 165 LE-LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD- 241 (268)
Q Consensus 165 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~- 241 (268)
.. .+..+. .......+.|+-....+++.. -+..+..||.+.|.-. +..+++|...|+.++|..-
T Consensus 147 p~~p~ys~~~w~s~asqVkwnyk~p~vlass--hg~~i~vwd~r~gs~p-----------l~s~K~~vs~vn~~~fnr~~ 213 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWNYKDPNVLASS--HGNDIFVWDLRKGSTP-----------LCSLKGHVSSVNSIDFNRFK 213 (1081)
T ss_pred CCcceeeeecccccCceeeecccCcchhhhc--cCCceEEEeccCCCcc-----------eEEecccceeeehHHHhhhh
Confidence 43 222221 233455666765545555432 2234667777655432 2235678888999999753
Q ss_pred CCeEEeeeCCCeEEEEeeCC
Q 024407 242 GKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 242 ~~~lasgs~Dg~i~i~~~~~ 261 (268)
...+.+.+.||+++.|.++.
T Consensus 214 ~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 214 YSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred hhhhcccCCCCceeeecccc
Confidence 35688999999999999875
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.72 E-value=0.015 Score=46.12 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=96.8
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEEec--CC-C---ceeeeeecCCeEEEEEcCCCccccc-ceEeeeeeeCCCCC
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTFNF--DS-P---ARSVDFAVGDKLAVITTDPFMELNS-AIHVKRIARDPADQ 76 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~--~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 76 (268)
+++ .|+.+..++. .++|+++++....... .. + +..+.+.+.+.+.+........... .-.++++..
T Consensus 50 ~~g-~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~----- 122 (246)
T PF08450_consen 50 PDG-RLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP----- 122 (246)
T ss_dssp TTS-EEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET-----
T ss_pred cCC-EEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC-----
Confidence 454 4555555444 4558888755444432 11 1 3455566666554443321110000 012222221
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCce-e---eecccccCcccceEEEEEcCCCCEEEEe
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKL-L---KESDKETGHKKTITSLAKAADGSHFLTG 151 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~-~---~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 151 (268)
.++ +..+...-...+.++|+|+++.|+ +-+..+.|..+++..... + ..+.....-....-.+++..+|++.++.
T Consensus 123 ~~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 123 DGK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp TSE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred CCe-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 112 222223344567899999999775 667889999999864322 1 1111111112246678999999988888
Q ss_pred eCCCcEEEEECCCcceeeeeecC-CceeEEEEc-cCCCeEEE
Q 024407 152 SLDKSAKLWDARTLELIKTYVTE-RPVNAVTMS-PLLDHVVL 191 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 191 (268)
...+.|..+|.+ ++.+..+..+ ..+.+++|. +....+++
T Consensus 202 ~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 202 WGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp ETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred cCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 888999999998 7777776554 456666663 33344433
No 310
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.69 E-value=0.0019 Score=55.71 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=86.0
Q ss_pred EEEEEcCC-CCEEEEE----eCCCc----EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEEC
Q 024407 92 NRAVWGPL-NRTIISA----GEDAI----VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 92 ~~~~~~~~-~~~l~s~----~~dg~----i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~ 162 (268)
.++.|+-. ...+.+. +.+|. -++|+...++..+.--..-..++.|.+++++|+...++.|+.||+|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 45566542 3444443 33343 236666554432211111146788999999999999999999999999999
Q ss_pred CCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeeh-hhhhh---hccccccccceEEEEE
Q 024407 163 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK-ILQEE---IGGVKGHFGPINALAF 238 (268)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~---~~~~~~h~~~v~~~~~ 238 (268)
+++.... ...+-.+..++|+|++..+++++. .+.+..+|..-..+......+ ..+.. +..+..+......+.|
T Consensus 289 ~~~~t~~-~ka~~~P~~iaWHp~gai~~V~s~--qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW 365 (545)
T PF11768_consen 289 TRGVTLL-AKAEFIPTLIAWHPDGAIFVVGSE--QGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQW 365 (545)
T ss_pred CCCeeee-eeecccceEEEEcCCCcEEEEEcC--CceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEe
Confidence 8764322 234456788999998876666544 345667776544443333211 11111 1122334455667777
Q ss_pred CCC
Q 024407 239 NPD 241 (268)
Q Consensus 239 sp~ 241 (268)
++.
T Consensus 366 ~~~ 368 (545)
T PF11768_consen 366 APA 368 (545)
T ss_pred ccC
Confidence 743
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0039 Score=55.69 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=86.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC-----CCEEEEeeCCCcEEEEECC---Ccceee
Q 024407 98 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-----GSHFLTGSLDKSAKLWDAR---TLELIK 169 (268)
Q Consensus 98 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-----~~~l~s~~~d~~i~iwd~~---~~~~~~ 169 (268)
.+|++++||+.||+|.|-.+-+.+..++.. ...++.+++++|+ +..+++++.-| +.++.-+ +...+.
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~ 155 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV 155 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEe----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee
Confidence 358999999999999999988877665443 3568899999998 56799999888 7777633 222222
Q ss_pred eeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeee
Q 024407 170 TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 249 (268)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs 249 (268)
....+.++.++.|.- ..++.+... + +..+|...+......-. +. . .......-..+.|.++.+.++ |
T Consensus 156 l~~~eG~I~~i~W~g--~lIAWand~-G--v~vyd~~~~~~l~~i~~---p~--~-~~R~e~fpphl~W~~~~~LVI--G 222 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWRG--NLIAWANDD-G--VKVYDTPTRQRLTNIPP---PS--Q-SVRPELFPPHLHWQDEDRLVI--G 222 (846)
T ss_pred eecCccceEEEEecC--cEEEEecCC-C--cEEEeccccceeeccCC---CC--C-CCCcccCCCceEecCCCeEEE--e
Confidence 223456788888874 344433222 1 23333332222111100 00 0 001111234678888777665 5
Q ss_pred CCCeEEEEeeC
Q 024407 250 EDGYVRLHHFD 260 (268)
Q Consensus 250 ~Dg~i~i~~~~ 260 (268)
..-+|+|..++
T Consensus 223 W~d~v~i~~I~ 233 (846)
T KOG2066|consen 223 WGDSVKICSIK 233 (846)
T ss_pred cCCeEEEEEEe
Confidence 55578887666
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.00016 Score=64.98 Aligned_cols=175 Identities=16% Similarity=0.146 Sum_probs=102.7
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.||.+.+.|+.|+..|.||++++.+|....... |..++.-+.-+.++.+.+.++....-+ ...|++. ..+.
T Consensus 1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl---saLW~~~-----s~~~ 1179 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL---SALWDAS-----STGG 1179 (1516)
T ss_pred EeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch---HHHhccc-----cccC
Confidence 388899999999999999999999997766665 455666666555554444433211000 1122221 1223
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee-cccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
+.+.+.+ =.++.|+.....-+.|..-..+.+||+.++..... +....+.+..-+.+.|+|+...++ .|| .
T Consensus 1180 ~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--v 1250 (1516)
T KOG1832|consen 1180 PRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--V 1250 (1516)
T ss_pred ccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--e
Confidence 3333332 23566765443334455557788999999866543 222222333446678999887664 455 4
Q ss_pred EEECCCcceeeeeecCCceeEEEEccCCCeEEEe
Q 024407 159 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (268)
+||.|..+.+..+..-.-...=.|+|++..+++.
T Consensus 1251 LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1251 LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIIN 1284 (1516)
T ss_pred eeeeccHHHHhhhhhheecccccccCCCceEEee
Confidence 6999987766655321111222478877766654
No 313
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.66 E-value=0.024 Score=46.95 Aligned_cols=138 Identities=15% Similarity=0.243 Sum_probs=78.0
Q ss_pred CcEEEEECCCC----ceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcc-eeeeeecCCceeEEEEcc
Q 024407 110 AIVRIWDTETG----KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTYVTERPVNAVTMSP 184 (268)
Q Consensus 110 g~i~iwd~~~~----~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~ 184 (268)
|.|.++++... ..+..+. ....+.+|++++-- .+ .|+++. .+.|.+|++...+ ....-....+....+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~-~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH-STEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE-EEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEE-EEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88888888874 1222111 12346788888654 33 444443 4889999998877 433322333334444444
Q ss_pred CCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 185 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+..++++-...+..+..++.....+....- ......++++.|-++++.++.+..+|.+.+++++++
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-----------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVAR-----------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEE-----------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEe-----------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 4556766655555555555542221211110 012345888888766678999999999999999864
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.65 E-value=0.019 Score=45.51 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=88.5
Q ss_pred EEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeeecccc-cC-cccceEEEEEcCCCCEEEEeeCC--------CcEEEE
Q 024407 92 NRAVWG-PLNRTIISAGEDAIVRIWDTETGKLLKESDKE-TG-HKKTITSLAKAADGSHFLTGSLD--------KSAKLW 160 (268)
Q Consensus 92 ~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~-h~~~v~~v~~s~~~~~l~s~~~d--------~~i~iw 160 (268)
..+.+. ++ ..++.+...+ +.++|..+++...-.... .. .....+.+++.++|+..++.... +.|..+
T Consensus 43 ~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~ 120 (246)
T PF08450_consen 43 NGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI 120 (246)
T ss_dssp EEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred ceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence 344555 44 4444454544 455699887554322221 12 34578899999999987776544 557777
Q ss_pred ECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEecc--CCCee-eeEeeehhhhhhhccccccccceEEEE
Q 024407 161 DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH--RAGKF-EAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~--~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
+.. ++.......-...+.++++|+++.++++-... ..+...+. ....+ ..+.+-. +..-.+..-.++
T Consensus 121 ~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~-~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~g~pDG~~ 190 (246)
T PF08450_consen 121 DPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN-GRIWRFDLDADGGELSNRRVFID--------FPGGPGYPDGLA 190 (246)
T ss_dssp ETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT-TEEEEEEEETTTCCEEEEEEEEE---------SSSSCEEEEEE
T ss_pred CCC-CeEEEEecCcccccceEECCcchheeeccccc-ceeEEEeccccccceeeeeeEEE--------cCCCCcCCCcce
Confidence 877 44333333334578999999887666544333 33444433 22211 1111110 111112345688
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+.++|+..++.-..+.|.+++-+++
T Consensus 191 vD~~G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 191 VDSDGNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EBTTS-EEEEEETTTEEEEEETTSC
T ss_pred EcCCCCEEEEEcCCCEEEEECCCcc
Confidence 9999998887777788887776655
No 315
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.61 E-value=0.014 Score=50.17 Aligned_cols=182 Identities=13% Similarity=0.153 Sum_probs=101.4
Q ss_pred CCCCCCCEEEEee---cC-CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 1 MFQANSMTLITGS---AD-QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 1 ~fs~d~~~l~s~s---~D-~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
.|+|+++.++--+ .. ..+.++|+++++..............+|+|+++.++.+..+. ....++.+.-
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd----g~~~iy~~dl----- 269 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD----GSPDIYLMDL----- 269 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC----CCccEEEEcC-----
Confidence 4788888855432 22 458899999988877777667777788899777666665432 2222222211
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCc--EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
.++.+..+....+.-+...|+|||++++-. +..|. |.++|++.+...+... ....-..-.++|||.+++..+.
T Consensus 270 ~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~----~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 270 DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF----SGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec----cCCCCcCccCCCCCCEEEEEec
Confidence 111122232222223367899999987644 45555 5555666554322111 1111114567899999987764
Q ss_pred C-Cc--EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecC
Q 024407 154 D-KS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ 195 (268)
Q Consensus 154 d-~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (268)
. |. |-+.|+.++..++.+........-.+.+++..+....+.
T Consensus 346 ~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 346 SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 3 44 666777665533333222233334566666665554433
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.57 E-value=0.029 Score=45.42 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=89.8
Q ss_pred EEEcCCCCEEEEE-----eCCCcEEEEECCC-CceeeecccccCcccceEEEEEcCCCCEEEEeeC--------------
Q 024407 94 AVWGPLNRTIISA-----GEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-------------- 153 (268)
Q Consensus 94 ~~~~~~~~~l~s~-----~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-------------- 153 (268)
.+|+|||++|++. ...|.|-|||... -+.+.++ ..|--.-..+.+.||+..|+.+..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~---~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLN 132 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF---PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLN 132 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe---cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecC
Confidence 5899999999876 4568899999983 2333332 233333445677899988877632
Q ss_pred ----CCcEEEEECCCcceeeeeecC-----CceeEEEEccCCCeEEEeecCCC------ceEEEeccCCCeeeeEeeehh
Q 024407 154 ----DKSAKLWDARTLELIKTYVTE-----RPVNAVTMSPLLDHVVLGGGQDA------SAVTTTDHRAGKFEAKFFDKI 218 (268)
Q Consensus 154 ----d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~~~ 218 (268)
+.+|..-|.++++.+.+...+ .++.=+++.+++ .++++.-..+ -.+...+.... +. .+.-
T Consensus 133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~--~~~~- 207 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA-LR--LLPA- 207 (305)
T ss_pred hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc-ce--eccC-
Confidence 456666777888877765432 234455566653 2333321111 01122211111 11 1110
Q ss_pred hhhhhccccccccceEEEEECCCCCeEEeee-CCCeEEEEeeCCCc
Q 024407 219 LQEEIGGVKGHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFDPDY 263 (268)
Q Consensus 219 ~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs-~Dg~i~i~~~~~~~ 263 (268)
..+....+. .-+-+|++++++.+++..| .-+.+.+|+....-
T Consensus 208 p~~~~~~l~---~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 208 PEEQWRRLN---GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred ChHHHHhhC---CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 011112222 3588999999998875444 77888999766543
No 317
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.56 E-value=0.00064 Score=54.09 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=87.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eeecccccCc------------ccceEEEEEcCCC--CEEEEe
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKETGH------------KKTITSLAKAADG--SHFLTG 151 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~h------------~~~v~~v~~s~~~--~~l~s~ 151 (268)
...|+++.|...|.++++|...|.|.+|.-...+. .+-+....+| ...|..+.+..++ ++++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 34688899999999999999999999996544321 0001111223 2346677665433 478888
Q ss_pred eCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEee-------cCCCceEEEeccCCCeeeeEeeehhhhhhhc
Q 024407 152 SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG-------GQDASAVTTTDHRAGKFEAKFFDKILQEEIG 224 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 224 (268)
+.|.+|++|.++.... +. ..+.....--.+|.++.+.... +.....+.+. + +..
T Consensus 106 tNdktiKlWKiyeknl-k~-va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~----------------p-~rv 166 (460)
T COG5170 106 TNDKTIKLWKIYEKNL-KV-VAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK----------------P-CRV 166 (460)
T ss_pred cCCceeeeeeeecccc-hh-hhccccccccccccCCCcCCHHHhhcccccccceEEEec----------------c-cee
Confidence 9999999999875321 11 1111111111122111110000 0000000000 0 001
Q ss_pred cccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 225 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 225 ~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
.-..|+..++++.|..|.+.++|+ .|=.|.+|.++...
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D 204 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIID 204 (460)
T ss_pred ccccceeEeeeeeecCchheeeec-cceeeeeccccccC
Confidence 124688889999999998888874 47889999887653
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.0012 Score=57.90 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=84.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 167 (268)
...|.--+++..+++++.|+.-|.+++|+-..++....- ..+....+....++++..++|+++..|.|.++-+.....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~--~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK--NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhccc--ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 445566677788899999999999999998776543321 123334455556777777788888888888775543110
Q ss_pred eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEe
Q 024407 168 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 247 (268)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~las 247 (268)
| ....++.. -+.|...|+|+.|+++++-+.+
T Consensus 111 ----------------~--~~~~~t~~-------------------------------d~~~~~rVTal~Ws~~~~k~ys 141 (726)
T KOG3621|consen 111 ----------------R--DLDYVTPC-------------------------------DKSHKCRVTALEWSKNGMKLYS 141 (726)
T ss_pred ----------------C--cceeeccc-------------------------------cccCCceEEEEEecccccEEee
Confidence 0 01111100 0236678999999999999999
Q ss_pred eeCCCeEEEEeeCC
Q 024407 248 GGEDGYVRLHHFDP 261 (268)
Q Consensus 248 gs~Dg~i~i~~~~~ 261 (268)
|..-|+|.+..++.
T Consensus 142 GD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 142 GDSQGKVVLTELDS 155 (726)
T ss_pred cCCCceEEEEEech
Confidence 99999998888776
No 319
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.54 E-value=0.00033 Score=39.80 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=28.5
Q ss_pred ccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 230 FGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 230 ~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.+.|.+++|+|....||.|..||.|.|||++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999994
No 320
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.0034 Score=53.79 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=58.6
Q ss_pred CeEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceeeecccccCcccceE-EEEEcCCCCEEEEeeCCCcE
Q 024407 90 RINRAVWGPLNRTIISAGE-----------DAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~~~l~s~~~d~~i 157 (268)
.|.-+.|||..+||+|=+. -..++|||+++|...+.+....+ +..++ -+.||.|+.++|--.. .+|
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~-~~~~WP~frWS~DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS-PYLKWPIFRWSHDDKYFARMTG-NSI 328 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC-CccccceEEeccCCceeEEecc-ceE
Confidence 3455666776666665442 25689999999977665543222 22233 3489999999987766 568
Q ss_pred EEEECCCcceeeeee-cCCceeEEEEccC
Q 024407 158 KLWDARTLELIKTYV-TERPVNAVTMSPL 185 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~ 185 (268)
.+|+..+...+..-. .-..+....|+|.
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~ 357 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPT 357 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCC
Confidence 999876644332211 1123566678885
No 321
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.00077 Score=59.84 Aligned_cols=133 Identities=16% Similarity=0.227 Sum_probs=85.5
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEe
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 85 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (268)
.++|.|...|||-+.|+.++..-..+. |...++++.|.-...++..+.
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsy------------------------------- 486 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSY------------------------------- 486 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeee-------------------------------
Confidence 357888888888888887765544443 344455555542222211111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~ 165 (268)
+ ...=.+++.-+.+.+-|+++|....-......-+++|..+..|.-+.||+..-.|.-+-+||+++-
T Consensus 487 -----------s--~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 487 -----------S--HVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred -----------c--cccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 0 000134556677888899998654322122335689999999999999999999999999999887
Q ss_pred ceeeeeecCCc-eeEEEEc
Q 024407 166 ELIKTYVTERP-VNAVTMS 183 (268)
Q Consensus 166 ~~~~~~~~~~~-~~~~~~~ 183 (268)
.+++......+ +..+.|+
T Consensus 554 ~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 554 RMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred hHHHHHhhcCCcEEEEeec
Confidence 66554433444 6777776
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00029 Score=57.72 Aligned_cols=85 Identities=22% Similarity=0.191 Sum_probs=68.8
Q ss_pred CceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EEEEeeCCC
Q 024407 78 GESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDK 155 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~ 155 (268)
.++...+.++...|.++.|+|..+ .+..++.++.|+|.|+++...+.+.. .+ .++++++|.-|.. ++.+|-..|
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---cc-CCceeeeeccCCcceeEEeccCc
Confidence 344556788889999999999887 67889999999999999987665543 34 7899999986654 567888999
Q ss_pred cEEEEECCCcc
Q 024407 156 SAKLWDARTLE 166 (268)
Q Consensus 156 ~i~iwd~~~~~ 166 (268)
.|.+||+|..+
T Consensus 259 ~VlvyD~R~~~ 269 (463)
T KOG1645|consen 259 MVLVYDMRQPE 269 (463)
T ss_pred eEEEEEccCCC
Confidence 99999999753
No 323
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.51 E-value=0.0053 Score=56.08 Aligned_cols=142 Identities=17% Similarity=0.187 Sum_probs=82.9
Q ss_pred CCCEEEE-eecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCe--------EEEEEcCC-CcccccceEeeeeeeCCC
Q 024407 5 NSMTLIT-GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK--------LAVITTDP-FMELNSAIHVKRIARDPA 74 (268)
Q Consensus 5 d~~~l~s-~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (268)
|.++|+. ......|.--|++.|+.+..++.+..+....+.|..+ .++..++. ...++-.+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~---------- 561 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRL---------- 561 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCC----------
Confidence 4444443 3456888888999999999998765554445555332 22222211 11111110
Q ss_pred CCCCceEEE-Ee--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEe
Q 024407 75 DQGGESVLI-LK--GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 151 (268)
Q Consensus 75 ~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 151 (268)
.+.+.+.. .+ ......+|++-+.+ .+||.|+.+|.||+||- .++..+.. .++-..+|..|+++.||.++++.
T Consensus 562 -~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~--lp~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 562 -SGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTA--LPGLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred -CCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhc--CCCCCCCeeEEEecCCCcEEEEe
Confidence 11111110 01 12334566665554 56788999999999994 34333322 23556899999999999988766
Q ss_pred eCCCcEEEEEC
Q 024407 152 SLDKSAKLWDA 162 (268)
Q Consensus 152 ~~d~~i~iwd~ 162 (268)
+. ..|.|++.
T Consensus 637 c~-tyLlLi~t 646 (794)
T PF08553_consen 637 CK-TYLLLIDT 646 (794)
T ss_pred ec-ceEEEEEE
Confidence 54 66777775
No 324
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.50 E-value=0.03 Score=43.94 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=64.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeee-ecCC---
Q 024407 100 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTER--- 175 (268)
Q Consensus 100 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~--- 175 (268)
++++++++.++.+..||..+|+.+............ . ..++..++.++.|+.|..+|.++++.+-+. ....
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce----e-eecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 567777889999999999999887655432221122 1 224556777778889999999999887763 2211
Q ss_pred c-eeEEEEccCCCeEEEeecCCCceEEEeccCCCeeee
Q 024407 176 P-VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 212 (268)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 212 (268)
. .........++.++++.. ...+...|.++|....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~--~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTS--SGKLVALDPKTGKLLW 146 (238)
T ss_dssp STB--SEEEEETTEEEEEET--CSEEEEEETTTTEEEE
T ss_pred ccccccCceEecCEEEEEec--cCcEEEEecCCCcEEE
Confidence 1 111111112444555433 3457777888777643
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.028 Score=50.90 Aligned_cols=200 Identities=11% Similarity=0.103 Sum_probs=111.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcc-cccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFME-LNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (268)
|++.+..+|-|+.||.|-+.+- ..+.+..++ +...+...-+...++.++++...... -...+.+|.+....+.+...
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 6788889999999998776652 222334444 23332222223333333333221111 22256777776643323233
Q ss_pred eE--EEEec-----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCceeeecccccCcccceEEEEEcCCCCEEEE
Q 024407 80 SV--LILKG-----PQGRINRAVWGPLNRTIISAGEDAIVRIWDT--ETGKLLKESDKETGHKKTITSLAKAADGSHFLT 150 (268)
Q Consensus 80 ~~--~~~~~-----~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s 150 (268)
++ +.+-+ ...++.+++.+.+-+.+++|-.+|.|..+.= ...+..+.... ..-..+|+++++-.++..++-
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-HRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-ccCCCCceeeEEecCCceeEE
Confidence 33 22223 2456888999999899999999999988842 11111111111 112478999999988887555
Q ss_pred eeCCCcEEEEECCCcce-eeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEec
Q 024407 151 GSLDKSAKLWDARTLEL-IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 204 (268)
Q Consensus 151 ~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 204 (268)
+..-..|.+|.+.+..+ ...+. ++.+.++..+++. ...+++++.........|
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~-t~qfIca~~e~l~fY~sd 243 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG-TYQFICAGSEFLYFYDSD 243 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCC-CccEEEecCceEEEEcCC
Confidence 55557799999885441 22222 3446677777664 344555555544433333
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.44 E-value=0.04 Score=51.77 Aligned_cols=234 Identities=15% Similarity=0.132 Sum_probs=113.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCC-CcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP-FMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|-.|.+.++.+..+|.|-+-|.++......=..+..|....|+|+.+++++.+.. .+.+... ..+.-.-++
T Consensus 76 fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~--------~f~~i~E~~ 147 (1265)
T KOG1920|consen 76 FLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK--------DFEPIAEKP 147 (1265)
T ss_pred EecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec--------cccchhccc
Confidence 3456677888888999999988876554433456778888899887766655432 1111000 000000000
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee--eccccc-----CcccceEEEEEcCCCCEEEEe--
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK--ESDKET-----GHKKTITSLAKAADGSHFLTG-- 151 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~-----~h~~~v~~v~~s~~~~~l~s~-- 151 (268)
+ + ..-.+.+ .++.+|+-..=.-+.-..|+... .....+ .....-+.+.|--||.++++.
T Consensus 148 L-----~------~d~~~~s-k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 148 L-----D------ADDERKS-KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred c-----c------ccccccc-ccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence 0 0 0000111 22333332211111111111000 000000 012233467888999998873
Q ss_pred ---eCCCcEEEEECCCcceeeeee--cCCceeEEEEccCCCeEEEeec--CCCceEEEeccCCCeeeeEeeehhhhhhhc
Q 024407 152 ---SLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGG--QDASAVTTTDHRAGKFEAKFFDKILQEEIG 224 (268)
Q Consensus 152 ---~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 224 (268)
.....|++||.. +.. .... ....-.+++|.|.|..+.+... .+.. |.. ..+.|.-.-.+ ...
T Consensus 216 ~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-Ivf-fErNGL~hg~f-~l~------ 284 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVF-FERNGLRHGEF-VLP------ 284 (1265)
T ss_pred eccCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCc-EEE-EecCCcccccc-ccC------
Confidence 233789999966 321 1111 1223457789997654443211 1111 111 11111111000 000
Q ss_pred cccccccceEEEEECCCCCeEEe---eeCCCeEEEEeeCCCcceec
Q 024407 225 GVKGHFGPINALAFNPDGKSFSS---GGEDGYVRLHHFDPDYFNIK 267 (268)
Q Consensus 225 ~~~~h~~~v~~~~~sp~~~~las---gs~Dg~i~i~~~~~~~~~~~ 267 (268)
..-....|..++|+.++..||. ..+...|++|...+-++.+|
T Consensus 285 -~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLK 329 (1265)
T KOG1920|consen 285 -FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLK 329 (1265)
T ss_pred -CcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEE
Confidence 0011123889999999999887 55566699999987766665
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0069 Score=54.72 Aligned_cols=106 Identities=10% Similarity=0.198 Sum_probs=69.2
Q ss_pred CCCCCCCEEEEeecC----CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 1 MFQANSMTLITGSAD----QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D----~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
+|+|..++|+.++-. |+|.|+ +++|++......+-.+.+++|||...++..+.. ...++++.. +
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe-----~g~~~v~~~------~ 89 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWE-----MGVSDVQKT------N 89 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccc-----cceeEEEec------C
Confidence 489999999988765 677777 355554443333334557888885543332211 112223221 1
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 118 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 118 (268)
..+.-.+...|..+|..+.|+|+|..++++-.-|.+..|...
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 222333345688999999999999999999999999999765
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.028 Score=46.53 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=49.9
Q ss_pred CCCCCCC-EEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~-~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.|||... +|..+|.+.+|++.|+++...+..+.
T Consensus 200 afSp~~~GLl~~asl~nkiki~dlet~~~vssy~---------------------------------------------- 233 (463)
T KOG1645|consen 200 AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---------------------------------------------- 233 (463)
T ss_pred ccCccccceeeeeccCceEEEEecccceeeehee----------------------------------------------
Confidence 3788776 78899999999999987755443332
Q ss_pred eEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCce
Q 024407 80 SVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKL 122 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 122 (268)
.+ ..+.+++|.-+.+ +|.+|-..|.|.|||++....
T Consensus 234 ------a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 234 ------AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred ------cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 12 3456677776664 667778999999999987543
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.00049 Score=61.69 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=65.6
Q ss_pred CCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 154 DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
.|+|.|| ..++++-....-+..+.+++|+|. .++++.|-+.+.+..|...... .......|+.++
T Consensus 40 ~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e------------~htv~~th~a~i 104 (1416)
T KOG3617|consen 40 GGSVTIF-ADTGEPQRDVTYPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTE------------THTVVETHPAPI 104 (1416)
T ss_pred CceEEEE-ecCCCCCcccccceehhhhccChH--HHHHhhccccceeEEEecCCce------------eeeeccCCCCCc
Confidence 4778877 455665444333445677899995 3444444444444444332222 122234688999
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeC--CCcceec
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFD--PDYFNIK 267 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~--~~~~~~~ 267 (268)
.-+.|||+|..++|+.+-|.+.+|+++ +++-+.+
T Consensus 105 ~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 105 QGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred eeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 999999999999999999999999999 6654443
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.28 E-value=0.11 Score=45.71 Aligned_cols=156 Identities=14% Similarity=0.195 Sum_probs=84.1
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEecCCCc------e-eeeeecCCeEEEEEcCCCc---ccccceEeeeeeeCCCCC
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFNFDSPA------R-SVDFAVGDKLAVITTDPFM---ELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 76 (268)
..++.++.|+.|...|.++|+.++.++..... . ...+. ++.+.+...+... .....+ ..+. ..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v--~alD----~~ 183 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGAL--RAYD----VE 183 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEE--EEEE----CC
Confidence 67888899999999999999999988754431 1 11111 2222222111100 000111 1111 12
Q ss_pred CCceEEEEecC-------------------C-CCe-EEEEEcCCCCEEEEEeCCC------------------cEEEEEC
Q 024407 77 GGESVLILKGP-------------------Q-GRI-NRAVWGPLNRTIISAGEDA------------------IVRIWDT 117 (268)
Q Consensus 77 ~~~~~~~~~~~-------------------~-~~v-~~~~~~~~~~~l~s~~~dg------------------~i~iwd~ 117 (268)
+++.+...+.. . ..+ ....+.+.+..++.++.++ .|.-+|.
T Consensus 184 TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~ 263 (488)
T cd00216 184 TGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA 263 (488)
T ss_pred CCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence 23333332211 0 111 1244555567777777665 7999999
Q ss_pred CCCceeeecccccCcc--------cce-EEEEEcCCCC---EEEEeeCCCcEEEEECCCcceeeee
Q 024407 118 ETGKLLKESDKETGHK--------KTI-TSLAKAADGS---HFLTGSLDKSAKLWDARTLELIKTY 171 (268)
Q Consensus 118 ~~~~~~~~~~~~~~h~--------~~v-~~v~~s~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~ 171 (268)
.+++........ .|. .++ ..+. .-++. .++.++.+|.+.-.|+++++.+-..
T Consensus 264 ~tG~~~W~~~~~-~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 264 DTGKVKWFYQTT-PHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CCCCEEEEeeCC-CCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 999887655321 121 111 1111 11233 5778888999999999999876654
No 331
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.20 E-value=0.098 Score=44.69 Aligned_cols=145 Identities=10% Similarity=0.085 Sum_probs=78.5
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceee-----------eeecCCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV-----------DFAVGDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
.+..++.++.++.+..+|.++|+.++..+........ ....++.+.+...++ .+ ..+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g------~l--~ald--- 136 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKG------QV--YALN--- 136 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCC------EE--EEEE---
Confidence 3567888899999999999999998887654311000 000122222221111 11 1111
Q ss_pred CCCCCceEEEEecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccC------cccceEEEEEcCCCC
Q 024407 74 ADQGGESVLILKGPQGRINR-AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG------HKKTITSLAKAADGS 146 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~v~~s~~~~ 146 (268)
..+++.+...+... .+.+ ... .+..++.+..++.+.-+|.++|+.+........ ...++. .+.
T Consensus 137 -~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v------~~~ 206 (394)
T PRK11138 137 -AEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT------AFG 206 (394)
T ss_pred -CCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE------ECC
Confidence 12233333222111 1111 111 245677788899999999999988765542110 111211 123
Q ss_pred EEEEeeCCCcEEEEECCCcceeee
Q 024407 147 HFLTGSLDKSAKLWDARTLELIKT 170 (268)
Q Consensus 147 ~l~s~~~d~~i~iwd~~~~~~~~~ 170 (268)
.++.++.++.+.-+|..+++.+-.
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~ 230 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQ 230 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhhe
Confidence 566677889999999988876544
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.015 Score=49.93 Aligned_cols=158 Identities=17% Similarity=0.139 Sum_probs=89.0
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEE---eCC-CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEE-EeeCCC
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISA---GED-AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDK 155 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~ 155 (268)
...+......+....|+|++..++-. ... ..+.++|+.+++...... .......-+|+|||+.|+ +...|+
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCCCCCCEEEEEECCCC
Confidence 33444445567778899999865433 222 458899999886554332 122233457899999876 455666
Q ss_pred c--EEEEECCCcceeeeeecCC-ceeEEEEccCCCeEEEeecCCCc-eEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 156 S--AKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDAS-AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 156 ~--i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
. |.+.|+.+.... .+.... .-..-.|+|+++.++..+...+. .+...+...+.... +.....
T Consensus 261 ~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-------------iT~~~~ 326 (425)
T COG0823 261 SPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-------------LTFSGG 326 (425)
T ss_pred CccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-------------eeccCC
Confidence 5 566677766532 233222 22244689999988887654443 23332222221111 111111
Q ss_pred ceEEEEECCCCCeEEeeeC-CCeEEE
Q 024407 232 PINALAFNPDGKSFSSGGE-DGYVRL 256 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~-Dg~i~i 256 (268)
.-..-.|||||++|+..+. +|...|
T Consensus 327 ~~~~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 327 GNSNPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred CCcCccCCCCCCEEEEEeccCCceee
Confidence 1126788999999886664 354333
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.17 E-value=0.046 Score=47.21 Aligned_cols=144 Identities=11% Similarity=0.123 Sum_probs=72.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 167 (268)
.-....+.++|+|+.++. +.||.-.+|.....+.. ....-...+|.+ .+.+++-..+++|+++.--..+.
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k--------~~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK--------AFGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE--------EEEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-T
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc--------ccCceeEEEEec-CccEEEEECCCeEEEEEcCcccc
Confidence 334678899999998877 67788888874432221 123445677888 45577777788999973222222
Q ss_pred eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEe
Q 024407 168 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 247 (268)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~las 247 (268)
...+..+..+..+ .+ +.++...+.+ .+..+|...+....+ +. -.+|..+.|+++|.++|-
T Consensus 102 ~k~i~~~~~~~~I--f~--G~LL~~~~~~--~i~~yDw~~~~~i~~------------i~--v~~vk~V~Ws~~g~~val 161 (443)
T PF04053_consen 102 VKSIKLPFSVEKI--FG--GNLLGVKSSD--FICFYDWETGKLIRR------------ID--VSAVKYVIWSDDGELVAL 161 (443)
T ss_dssp T-----SS-EEEE--E---SSSEEEEETT--EEEEE-TTT--EEEE------------ES--S-E-EEEEE-TTSSEEEE
T ss_pred ceEEcCCcccceE--Ec--CcEEEEECCC--CEEEEEhhHcceeeE------------Ee--cCCCcEEEEECCCCEEEE
Confidence 2233333222222 22 3344333333 345555554443322 21 134889999999999998
Q ss_pred eeCCCeEEEEeeCCC
Q 024407 248 GGEDGYVRLHHFDPD 262 (268)
Q Consensus 248 gs~Dg~i~i~~~~~~ 262 (268)
.+.| .+.|.+++-+
T Consensus 162 ~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 162 VTKD-SIYILKYNLE 175 (443)
T ss_dssp E-S--SEEEEEE-HH
T ss_pred EeCC-eEEEEEecch
Confidence 8865 7777777665
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.13 E-value=0.032 Score=49.51 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCce------------eeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 89 GRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKL------------LKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
.....+.++|||++++++ ..+++|-+.|+.+.+. ..++.. ...-...+|.++|+...|-..|.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~ds 396 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDS 396 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecc
Confidence 345678999999988655 5699999999987542 222211 11223457889999888999999
Q ss_pred cEEEEECCC
Q 024407 156 SAKLWDART 164 (268)
Q Consensus 156 ~i~iwd~~~ 164 (268)
.|..||+..
T Consensus 397 qv~kwn~~~ 405 (635)
T PRK02888 397 QIVKWNIEA 405 (635)
T ss_pred eeEEEehHH
Confidence 999999875
No 335
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0041 Score=54.12 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=67.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceE-EEEEcCCCCEEEEeeCCCcEEEEECCCccee
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDARTLELI 168 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 168 (268)
.+.-+.|+|.-..+|.+..+|.|.+..+.- +.+..+. -+...++ +++|.|||+.|+.+-.||+|++.|..++..+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~-qRlwtip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNW-QRLWTIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEecc-ceeEecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 466788999999999999999999998873 3333333 2445555 9999999999999999999999999988766
Q ss_pred ee--eecCCceeEEEEc
Q 024407 169 KT--YVTERPVNAVTMS 183 (268)
Q Consensus 169 ~~--~~~~~~~~~~~~~ 183 (268)
.. +..+.++...-|.
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 55 2233344444554
No 336
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.10 E-value=0.15 Score=43.61 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=79.8
Q ss_pred CCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEe
Q 024407 6 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 85 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (268)
+..++.++.++.+..+|.++|+.+++.+...++..-....++.+.+...++. +...+ ..+++.+....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~------l~ald------~~tG~~~W~~~ 187 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGM------LQALN------ESDGAVKWTVN 187 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCE------EEEEE------ccCCCEeeeec
Confidence 4567778899999999999999998887554433221122333333222211 11111 12233333222
Q ss_pred cCCCCe-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccC---cc-cceEEEEEcC--CCCEEEEeeCC
Q 024407 86 GPQGRI-----NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG---HK-KTITSLAKAA--DGSHFLTGSLD 154 (268)
Q Consensus 86 ~~~~~v-----~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---h~-~~v~~v~~s~--~~~~l~s~~~d 154 (268)
.....+ ..... .+..++.++.+|.+..+|..+++.+.+...... +. .....+..+| .+..++.++.+
T Consensus 188 ~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~ 265 (394)
T PRK11138 188 LDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN 265 (394)
T ss_pred CCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC
Confidence 110000 00111 134567778899999999999876654321100 00 0000111111 24567777889
Q ss_pred CcEEEEECCCcceeee
Q 024407 155 KSAKLWDARTLELIKT 170 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~ 170 (268)
+.+.-+|+++++.+-+
T Consensus 266 g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 266 GNLVALDLRSGQIVWK 281 (394)
T ss_pred CeEEEEECCCCCEEEe
Confidence 9999999999876544
No 337
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.00 E-value=0.12 Score=40.99 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=73.3
Q ss_pred EeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecC------CceeE
Q 024407 106 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE------RPVNA 179 (268)
Q Consensus 106 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~ 179 (268)
.-.++...+||..+-+.+..+. .+..=+.++ .|+..|+....+.+|.++|+.+.+..+.+... ..++.
T Consensus 106 TWk~~~~f~yd~~tl~~~~~~~----y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKIGTFP----YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE 179 (264)
T ss_dssp ESSSSEEEEEETTTTEEEEEEE-----SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred EecCCeEEEEccccceEEEEEe----cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence 3577888999998877666553 234455665 56778888888899999999998877665321 13455
Q ss_pred EEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc---ccccccceEEEEECCCCC-eEEeee
Q 024407 180 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG---VKGHFGPINALAFNPDGK-SFSSGG 249 (268)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~sp~~~-~lasgs 249 (268)
+.+.. +.+.+..=. .-.|..-|..+|.+...+--......... .....+..+-|||.|..+ +++||-
T Consensus 180 LE~i~--G~IyANVW~-td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 180 LEYIN--GKIYANVWQ-TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEET--TEEEEEETT-SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEc--CEEEEEeCC-CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 66652 444443322 22455557777776543211111111110 011134578899988664 566654
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.93 E-value=0.23 Score=43.01 Aligned_cols=212 Identities=15% Similarity=0.197 Sum_probs=96.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEe-eeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV-KRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (268)
++|+++.++. ..||.--++.....+... . +.-....|...+.+++.-.... +.+ ..... ...+.
T Consensus 40 ~npngr~v~V-~g~geY~iyt~~~~r~k~-~---G~g~~~vw~~~n~yAv~~~~~~------I~I~kn~~~----~~~k~ 104 (443)
T PF04053_consen 40 HNPNGRFVLV-CGDGEYEIYTALAWRNKA-F---GSGLSFVWSSRNRYAVLESSST------IKIYKNFKN----EVVKS 104 (443)
T ss_dssp E-TTSSEEEE-EETTEEEEEETTTTEEEE-E---EE-SEEEE-TSSEEEEE-TTS-------EEEEETTEE-----TT--
T ss_pred ECCCCCEEEE-EcCCEEEEEEccCCcccc-c---CceeEEEEecCccEEEEECCCe------EEEEEcCcc----ccceE
Confidence 6899998888 566777788754444322 2 2233455666566555433221 121 11110 00001
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+ +-. -.+.. .|. |..|+..+. +.|.+||..+++.++.+.. .+|..|.|++++++++..+.+ ++.+.
T Consensus 105 i---~~~-~~~~~-If~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 105 I---KLP-FSVEK-IFG--GNLLGVKSS-DFICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp ------S-S-EEE-EE---SSSEEEEET-TEEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred E---cCC-cccce-EEc--CcEEEEECC-CCEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 0 000 01111 122 666665544 4899999999999887752 248899999999999888765 56666
Q ss_pred ECCCc-----------ceeeeeec-CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccc
Q 024407 161 DARTL-----------ELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 228 (268)
Q Consensus 161 d~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
+.+.. ..+..+.. ...+.+..|..+ +++-.... .+. ++- .-+...+..
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fiYtT~~--~lk------------Yl~---~Ge~~~i~~ 230 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CFIYTTSN--HLK------------YLV---NGETGIIAH 230 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EEEEE-TT--EEE------------EEE---TTEEEEEEE
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC---EEEEEcCC--eEE------------EEE---cCCcceEEE
Confidence 64432 02222222 445666777653 22222111 111 110 001111111
Q ss_pred cccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 229 HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
-..++.=+.+.|+.+.+.....|+.+..+.++..
T Consensus 231 ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 231 LDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred cCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 1234566777787677777788888888877754
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.89 E-value=0.15 Score=40.16 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=66.2
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEec
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 86 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (268)
.+++-||..+.++.-|.++|...+.-.....+.+-+.-.++.+++..-.+ .+.+... .++++..++..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g------~lYfl~~------~tGs~~w~f~~ 91 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSG------GLYFLCV------KTGSQIWNFVI 91 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccC------cEEEEEe------cchhheeeeee
Confidence 45788899999999999999988766555555544444455544433222 1111111 12222222221
Q ss_pred CCCCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecc
Q 024407 87 PQGRI-NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 127 (268)
Q Consensus 87 ~~~~v-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 127 (268)
-. .| ......+++..+.+|+.|+..+..|.++...+...+
T Consensus 92 ~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 92 LE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred hh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 11 11 224557788999999999999999999877665543
No 340
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.88 E-value=0.00097 Score=58.01 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=109.4
Q ss_pred CCEEEEeecCCcEEEeecCCCcEE-EEE--ecCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCC--CCCCCc
Q 024407 6 SMTLITGSADQTAKLWNVETGAQL-FTF--NFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDP--ADQGGE 79 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~~~-~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 79 (268)
.-+++.|+.+|.|-+=......-. ..+ ++..+-.+++|.+-+ ..++++.+ ....+..+.+|++.+.. +.+.
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagld-khrnds~~~Iwdi~s~ltvPke~-- 146 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLD-KHRNDSSLKIWDINSLLTVPKES-- 146 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhh-hhcccCCccceecccccCCCccc--
Confidence 356888889998887765432211 111 122233344444321 22222222 12345566777776642 1111
Q ss_pred eEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcE
Q 024407 80 SVLILKG-PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSA 157 (268)
Q Consensus 80 ~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i 157 (268)
..+.+ .-....+++|..+.+.+++|.....+.++|++........ -.+..+..+.++| .++++++-. |+-|
T Consensus 147 --~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s----vnTk~vqG~tVdp~~~nY~cs~~-dg~i 219 (783)
T KOG1008|consen 147 --PLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS----VNTKYVQGITVDPFSPNYFCSNS-DGDI 219 (783)
T ss_pred --cccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh----hhhhhcccceecCCCCCceeccc-cCce
Confidence 11111 2234457888888889999999999999999853322111 1234566677788 677776666 9999
Q ss_pred EEEE-CCCcc-eeeeeec-----CCceeEEEEccCCCeEEEeecCCCceEEEeccC
Q 024407 158 KLWD-ARTLE-LIKTYVT-----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 206 (268)
Q Consensus 158 ~iwd-~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 206 (268)
.+|| .++.+ .+..+.+ +.+...++|.|.-...++.-..+...|...|..
T Consensus 220 AiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 220 AIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 9999 55432 1222111 234778889987666666666777777766543
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.46 Score=43.52 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=93.0
Q ss_pred EEEecCCCC-eEEEEEcCCCCEEEEEeCCCc-----EEEEECCCC---c---ee---eecc-cccCcccceEEEEEcCCC
Q 024407 82 LILKGPQGR-INRAVWGPLNRTIISAGEDAI-----VRIWDTETG---K---LL---KESD-KETGHKKTITSLAKAADG 145 (268)
Q Consensus 82 ~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~---~---~~---~~~~-~~~~h~~~v~~v~~s~~~ 145 (268)
..++++... |..+-.......|++.+.|+. ++|||++.. + .. +... ..+--+.++..++++.+-
T Consensus 58 ~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l 137 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL 137 (933)
T ss_pred ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc
Confidence 345555544 333333333357788876654 899998753 1 11 1111 112235788899999998
Q ss_pred CEEEEeeCCCcEEEEECCC----c-ceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh
Q 024407 146 SHFLTGSLDKSAKLWDART----L-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220 (268)
Q Consensus 146 ~~l~s~~~d~~i~iwd~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 220 (268)
..+++|-.+|.|..+.-.- + +..-......++.++.+...+..+++........+.....+.
T Consensus 138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~------------- 204 (933)
T KOG2114|consen 138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT------------- 204 (933)
T ss_pred cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-------------
Confidence 8999999999999885321 1 111112235678888888776664444333322222221111
Q ss_pred hhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 221 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 221 ~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
.....+..|-..++|..+++-...|++++ +..+.+|+-++
T Consensus 205 p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 205 PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence 01122334555788999987666466554 34666665554
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.59 E-value=0.014 Score=51.61 Aligned_cols=78 Identities=12% Similarity=0.142 Sum_probs=61.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee---ecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 87 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK---ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 87 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
..+.++....+++..+++.|+..|.|.++-+..+.... .-..+..|+..|++++|++++..+.+|-.-|+|..-.+.
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 34556667888888899999999999999877643221 112234578899999999999999999999999888776
Q ss_pred C
Q 024407 164 T 164 (268)
Q Consensus 164 ~ 164 (268)
.
T Consensus 155 s 155 (726)
T KOG3621|consen 155 S 155 (726)
T ss_pred h
Confidence 6
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.57 E-value=0.13 Score=35.05 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=54.2
Q ss_pred CEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc
Q 024407 146 SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225 (268)
Q Consensus 146 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 225 (268)
+.|++++.|..|++|+-. +.+..+.....+..+.-... ..+.. +..++.+..++.....+..+
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y--~l~NGTVGvY~~~~RlWRiK------------ 78 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAY--ALANGTVGVYDRSQRLWRIK------------ 78 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEE--EecCCEEEEEeCcceeeeec------------
Confidence 579999999999999743 56666655566666665543 22222 33445566666544333222
Q ss_pred ccccccceEEEEEC---CCC-CeEEeeeCCCeEEE
Q 024407 226 VKGHFGPINALAFN---PDG-KSFSSGGEDGYVRL 256 (268)
Q Consensus 226 ~~~h~~~v~~~~~s---p~~-~~lasgs~Dg~i~i 256 (268)
.. ..++++.+. .|| +.|++|=.+|.|-+
T Consensus 79 --SK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 79 --SK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --cC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 11 124555443 344 46999999998854
No 344
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.078 Score=45.73 Aligned_cols=151 Identities=20% Similarity=0.245 Sum_probs=84.1
Q ss_pred CCCE-EEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc-eEE
Q 024407 5 NSMT-LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE-SVL 82 (268)
Q Consensus 5 d~~~-l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 82 (268)
+.++ |.++..-..++--|++.|+.+..+.....|.-+++.|..+..-+....++.-.+.-.+-++.. ...++ .+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp---Rv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP---RVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecc---cccCcceee
Confidence 3444 445555566777789999999999877777777776643322211111100000000111110 01112 222
Q ss_pred EEecCC----CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 83 ILKGPQ----GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 83 ~~~~~~----~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
...+|+ ....|..-.. ..+++.||.+|.||+||- .++..+.. .++-..+|..|..+.+|.++++.+ +.+|.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTA--lPgLG~~I~hVdvtadGKwil~Tc-~tyLl 495 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTA--LPGLGDAIKHVDVTADGKWILATC-KTYLL 495 (644)
T ss_pred eeeccccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhc--ccccCCceeeEEeeccCcEEEEec-ccEEE
Confidence 233332 1223333333 458899999999999996 44433332 235678999999999999876554 56777
Q ss_pred EEECC
Q 024407 159 LWDAR 163 (268)
Q Consensus 159 iwd~~ 163 (268)
+-|++
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 77754
No 345
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.54 E-value=0.11 Score=49.04 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=58.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcc
Q 024407 87 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 166 (268)
Q Consensus 87 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~ 166 (268)
..+.|.++.|.-+...+..+...|.|.+-|..+...-. ...-...|.+++|+||...++-++.+.++. ++..+.+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee~l~liT~~~tll-~mT~~f~ 141 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEELLALITGRQTLL-FMTKDFE 141 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCcEEEEEeCCcEEE-EEecccc
Confidence 34689999999999999999999999999887754321 112457899999999999999998877774 3444444
Q ss_pred ee
Q 024407 167 LI 168 (268)
Q Consensus 167 ~~ 168 (268)
++
T Consensus 142 ~i 143 (1265)
T KOG1920|consen 142 PI 143 (1265)
T ss_pred ch
Confidence 43
No 346
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.45 E-value=0.017 Score=32.83 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDT 117 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 117 (268)
..+|..+.|+|....|+.+..+|.|.+|.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456899999999999999999999999998
No 347
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.087 Score=49.13 Aligned_cols=71 Identities=21% Similarity=0.423 Sum_probs=53.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccc---eEEEEEcCCCCEEEEeeCCCcEEEEEC
Q 024407 87 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 87 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~---v~~v~~s~~~~~l~s~~~d~~i~iwd~ 162 (268)
.+++|++++|+.+|+.++.|-.+|.|.+||+.+++..+.+.. |..+ |..+.+..+++.++++..-|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e---~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE---HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee---cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 368999999999999999999999999999999888776542 3333 344445556667778777775 4553
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.53 Score=40.10 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=109.3
Q ss_pred CCCCC-EEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 3 QANSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 3 s~d~~-~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
+++++ ..++...+..|.+.|..+.+.............+.+.+.++.+.++.... ....+.+ +. ..+.+.+
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~--~~~~vsv--id----~~t~~~~ 153 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN--GNNTVSV--ID----AATNKVT 153 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc--CCceEEE--Ee----CCCCeEE
Confidence 45555 55566666999999988877777776655777888888765555544321 1111111 11 1233344
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceee-ecccccCcccceEEEEEcCCCCEEEEeeCC---Cc
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLD---KS 156 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~ 156 (268)
....-...+ ..+.++|+|+.++.+ ..++.|.+.|........ .......-...-..+.+++++..+...... ++
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 444433334 788999999966544 588999999987765542 100001112233467889999966554433 58
Q ss_pred EEEEECCCcceeee-eecCC-ceeEEEEccCCCeEEEe
Q 024407 157 AKLWDARTLELIKT-YVTER-PVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 157 i~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 192 (268)
+...|..++..... ...+. ....+...|.+..+...
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA 270 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence 99999998776654 22222 34566778877665554
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.37 E-value=0.19 Score=46.40 Aligned_cols=134 Identities=16% Similarity=0.244 Sum_probs=76.1
Q ss_pred eCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-----CCCEEEEeeCCCcEEEEECCCcc--eeeeee----cCC
Q 024407 107 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-----DGSHFLTGSLDKSAKLWDARTLE--LIKTYV----TER 175 (268)
Q Consensus 107 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-----~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~----~~~ 175 (268)
...+.|+-.|+++|+.+..... ....+|..++-.. .++....|-.++.|..||+|-.. ++.... ...
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~--~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKV--HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeec--CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 4568899999999998876542 1233466665321 24456777788999999999532 332111 122
Q ss_pred ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEE
Q 024407 176 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 255 (268)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~ 255 (268)
...+++-+.. +++++++..+ .| ++|+..-......+++--.+|..|..+.||+||+..+. .++-
T Consensus 579 ~Fs~~aTt~~-G~iavgs~~G--~I------------RLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLl 642 (794)
T PF08553_consen 579 NFSCFATTED-GYIAVGSNKG--DI------------RLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLL 642 (794)
T ss_pred CceEEEecCC-ceEEEEeCCC--cE------------EeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEE
Confidence 2334443332 3344433222 22 23333222222234455578999999999999876664 4554
Q ss_pred EEe
Q 024407 256 LHH 258 (268)
Q Consensus 256 i~~ 258 (268)
+..
T Consensus 643 Li~ 645 (794)
T PF08553_consen 643 LID 645 (794)
T ss_pred EEE
Confidence 444
No 350
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.27 E-value=0.62 Score=39.77 Aligned_cols=165 Identities=18% Similarity=0.121 Sum_probs=74.8
Q ss_pred CCCCEEEEEe------CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC------------------
Q 024407 98 PLNRTIISAG------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------------------ 153 (268)
Q Consensus 98 ~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~------------------ 153 (268)
|+|+.++|+- .-|-+.++|-++-.....-....+....-..+-+.|..+.++|...
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 6777777662 2245777887765544332222122333445566677777777643
Q ss_pred --CCcEEEEECCCcceeeeeecCC---ceeEEEE--ccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh------
Q 024407 154 --DKSAKLWDARTLELIKTYVTER---PVNAVTM--SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ------ 220 (268)
Q Consensus 154 --d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------ 220 (268)
-.++.+||+.+.+.++++.... -...+.+ .|...+-++++.-.+.+...+....+.+.++..-....
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 5689999999999988876542 2233333 45555555544433332223332445554432211111
Q ss_pred ---hhhccccccccceEEEEECCCCCeEE-eeeCCCeEEEEeeCCC
Q 024407 221 ---EEIGGVKGHFGPINALAFNPDGKSFS-SGGEDGYVRLHHFDPD 262 (268)
Q Consensus 221 ---~~~~~~~~h~~~v~~~~~sp~~~~la-sgs~Dg~i~i~~~~~~ 262 (268)
+.++....-+.-|+.|.+|.|.++|. ++=.+|.||-|++...
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 11111112234589999999999966 5557999999988754
No 351
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.028 Score=49.19 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=43.1
Q ss_pred EEEEecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc
Q 024407 81 VLILKGPQGRIN-RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 142 (268)
Q Consensus 81 ~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s 142 (268)
+..++-|..+++ +++|.|||+.|+.|-.||+|++-|..++..+.+... .-...|.++-|+
T Consensus 54 lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~--s~e~~is~~~w~ 114 (665)
T KOG4640|consen 54 LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLF--SVETDISKGIWD 114 (665)
T ss_pred eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecccc--ccccchheeecc
Confidence 344554566666 999999999999999999999999999876654211 123455555554
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.14 E-value=0.093 Score=44.71 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=57.5
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccc-----cCcccceEEEEEc-----CCC-
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----TGHKKTITSLAKA-----ADG- 145 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~h~~~v~~v~~s-----~~~- 145 (268)
+..|...+...+++|++++.+ +=..++.|+.+|.+.|.|+|....+...... ......++++.|. .|+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 356777788889999999996 5578899999999999999887766542211 1234567777766 233
Q ss_pred --CEEEEeeCCCcEEEEECC
Q 024407 146 --SHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 146 --~~l~s~~~d~~i~iwd~~ 163 (268)
-.++++...|.+.+|.+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEE
T ss_pred cceEEEEEeCCCCEEEEEEe
Confidence 357888999999999764
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.05 E-value=0.76 Score=39.57 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=30.6
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 119 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 119 (268)
.|+.+..+.=..+.+.++.|+.+ +.|++...||.+++||+.-
T Consensus 69 sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 69 SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence 34555554423378999999884 5666788999999999863
No 354
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.02 E-value=0.71 Score=38.15 Aligned_cols=133 Identities=22% Similarity=0.231 Sum_probs=83.5
Q ss_pred CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC----------CCcEEEEECCCcceeeeeecCCc---
Q 024407 110 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL----------DKSAKLWDARTLELIKTYVTERP--- 176 (268)
Q Consensus 110 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~--- 176 (268)
+.+.++|.++++..-.+. .+..-.+..+|+++.+.+++. ...|.+||..+.+....+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~-----~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID-----TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEE-----EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEee-----cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 468899999988765553 233444667899998887533 55789999999877666544321
Q ss_pred -----eeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCC
Q 024407 177 -----VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED 251 (268)
Q Consensus 177 -----~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~D 251 (268)
.....++++++.+++..-.....+...|...+.+.... + ...+..+-=++. +-|.+-+.|
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei-~-------------~PGC~~iyP~~~-~~F~~lC~D 156 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI-D-------------TPGCWLIYPSGN-RGFSMLCGD 156 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE-E-------------GTSEEEEEEEET-TEEEEEETT
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee-c-------------CCCEEEEEecCC-CceEEEecC
Confidence 23356788888888877777778888887776664321 1 112222221222 346666777
Q ss_pred CeEEEEeeCCC
Q 024407 252 GYVRLHHFDPD 262 (268)
Q Consensus 252 g~i~i~~~~~~ 262 (268)
|.+.-..++.+
T Consensus 157 Gsl~~v~Ld~~ 167 (342)
T PF06433_consen 157 GSLLTVTLDAD 167 (342)
T ss_dssp SCEEEEEETST
T ss_pred CceEEEEECCC
Confidence 77766666643
No 355
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.01 E-value=0.099 Score=47.96 Aligned_cols=148 Identities=16% Similarity=0.226 Sum_probs=94.2
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEc-CCC---cccccceEeeeeeeCCCCCCCc
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITT-DPF---MELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
+++.|..|..-|+|.+=|+.+.+.+.++. |.+.+...+++ +.+++.++ ... ...+.-+.++++..-.. -.
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra---l~ 260 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA---LS 260 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhc---cC
Confidence 56789999999999999999999999887 45666666554 33333332 211 12344445555543211 01
Q ss_pred eEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECC---CCcee-eecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 80 SVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTE---TGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~---~~~~~-~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
|+.. +-++ .-+.|+|.- .+++.+++.|...+-|.. +...- ..+. ...+.+.++++++.+..++.+-.+
T Consensus 261 PI~~---~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~---p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 261 PIQF---PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN---PNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred Cccc---ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEc---cCCCcceeEEecCCCceEEEeccc
Confidence 1111 1111 335667753 578888999999998833 22111 1121 234568999999999999999999
Q ss_pred CcEEEEECCC
Q 024407 155 KSAKLWDART 164 (268)
Q Consensus 155 ~~i~iwd~~~ 164 (268)
|.|.+|--+.
T Consensus 334 g~v~~wa~~~ 343 (1118)
T KOG1275|consen 334 GHVNLWADRP 343 (1118)
T ss_pred CcEeeecCCC
Confidence 9999998543
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.00 E-value=0.63 Score=37.43 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=43.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce
Q 024407 99 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 99 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 167 (268)
.++.|+.|..+| +.+++........... +...|..+...++-+.+++-+ |+++.++++.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP 68 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence 357888898888 8999983322222221 334599998888877776665 49999999886544
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.83 E-value=0.34 Score=32.99 Aligned_cols=78 Identities=12% Similarity=0.247 Sum_probs=50.3
Q ss_pred cCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCC
Q 024407 97 GPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175 (268)
Q Consensus 97 ~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 175 (268)
.-+| +.|+.||.|..||+|+-+ ..+..+. -...|+.+.-... ..++-+..+|+|-+|+.... +-......
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~----e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWRiKSK~ 81 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGD--EIVAEIT----ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWRIKSKN 81 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCC--cEEEEEe----cccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eeeeccCC
Confidence 3344 578999999999999864 3334432 2456777766554 67999999999999986432 22223333
Q ss_pred ceeEEEEc
Q 024407 176 PVNAVTMS 183 (268)
Q Consensus 176 ~~~~~~~~ 183 (268)
.+.++.+.
T Consensus 82 ~~~~~~~~ 89 (111)
T PF14783_consen 82 QVTSMAFY 89 (111)
T ss_pred CeEEEEEE
Confidence 45555443
No 358
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.061 Score=50.09 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=54.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee
Q 024407 101 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 172 (268)
..++.|+.-|.+...|+... ++.+.....-+.+|++++|+.+|..++.|-.+|-|.+||+.+++..+.+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 35677888888888887653 22222333456899999999999999999999999999999988777664
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.81 E-value=0.47 Score=42.76 Aligned_cols=155 Identities=12% Similarity=0.085 Sum_probs=81.1
Q ss_pred CCeEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC------
Q 024407 89 GRINRAVWGPLNRTIISAG------EDA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------ 154 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d------ 154 (268)
..+.+..++|+|+.++..- .|. .|.+++... .. ..+- .+. ..+.-.|+|+|..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt--~g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVL--EGH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeee--cCC--CCCCceECCCCCceEEEecCcceEEE
Confidence 3567889999999876554 243 444545422 11 2221 121 25667789998877766432
Q ss_pred ------CcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEE-EeccCCCeeeeEeeehhhhhhhcccc
Q 024407 155 ------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVT-TTDHRAGKFEAKFFDKILQEEIGGVK 227 (268)
Q Consensus 155 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~ 227 (268)
+.+.+.+++.++... .....+..+.|+|++..+++..+. ...+. ......|.... . ....+. .
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g-~v~Va~Vvr~~~G~~~l---~--~~~~l~--~ 493 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGG-KVYLAVVEQTEDGQYAL---T--NPREVG--P 493 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECC-EEEEEEEEeCCCCceee---c--ccEEee--c
Confidence 233333444433322 224568999999999988876532 22221 12222232111 0 000010 1
Q ss_pred ccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 228 GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 228 ~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+-...+.+++|.+++..+ .+..++.-.+|++.
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 112336789999998854 55555555556544
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.56 E-value=0.0084 Score=52.44 Aligned_cols=167 Identities=17% Similarity=0.226 Sum_probs=92.2
Q ss_pred EecCCCCeEEEEEcCCC-CEEEEEe----CCCcEEEEECCCCcee--eecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 84 LKGPQGRINRAVWGPLN-RTIISAG----EDAIVRIWDTETGKLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~-~~l~s~~----~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
.+++...-++++|++.. +.|+.|= .|-.+.|||..++-.. ....-..+....+..+++..+...+++|.....
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS 177 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence 35667777889999864 5555542 4566999999876211 111000112334557777778888899999999
Q ss_pred EEEEECCCc-ceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEecc-CCCeeeeEeeehhhhhhhccccccccceE
Q 024407 157 AKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH-RAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 157 i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
+.++|+|.. .....+ ....+..+...|.....+++..+ ..+..||. +.- + ......++..+.....+.
T Consensus 178 ~~ifdlRqs~~~~~sv-nTk~vqG~tVdp~~~nY~cs~~d--g~iAiwD~~rni--e-----npl~~i~~~~N~~~~~l~ 247 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSV-NTKYVQGITVDPFSPNYFCSNSD--GDIAIWDTYRNI--E-----NPLQIILRNENKKPKQLF 247 (783)
T ss_pred hhhhhhhhhhhhhhhh-hhhhcccceecCCCCCceecccc--Cceeeccchhhh--c-----cHHHHHhhCCCCccccee
Confidence 999999932 111111 12235566667733333333333 34566662 211 1 111111111111223589
Q ss_pred EEEECCCC-CeEEeeeCC-CeEEEEeeC
Q 024407 235 ALAFNPDG-KSFSSGGED-GYVRLHHFD 260 (268)
Q Consensus 235 ~~~~sp~~-~~lasgs~D-g~i~i~~~~ 260 (268)
.++|.|-. ..+++...| ++|+++.+.
T Consensus 248 ~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 248 ALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999965 346666655 566666543
No 361
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.51 E-value=1.2 Score=36.92 Aligned_cols=235 Identities=14% Similarity=0.136 Sum_probs=114.2
Q ss_pred CCCCCCEEEEee----------cCCcEEEeecCCCcEEEEEecCCCce--------eeeeecCCeEEEEEcCCCcccccc
Q 024407 2 FQANSMTLITGS----------ADQTAKLWNVETGAQLFTFNFDSPAR--------SVDFAVGDKLAVITTDPFMELNSA 63 (268)
Q Consensus 2 fs~d~~~l~s~s----------~D~tv~~wd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 63 (268)
.|||++.+++++ ..-.|.+||.++-+....+..+.+.+ ...++.+++.+++.+-. =-..
T Consensus 43 ~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T---Pa~S 119 (342)
T PF06433_consen 43 LSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT---PATS 119 (342)
T ss_dssp E-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES---SSEE
T ss_pred ECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC---CCCe
Confidence 578999988855 34679999999998888777654322 22333344443332200 0011
Q ss_pred eEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-Cceeeecc--cccCcccceEEE
Q 024407 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTET-GKLLKESD--KETGHKKTITSL 139 (268)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~-~~~~~~~~--~~~~h~~~v~~v 139 (268)
+.+.++. ..+-+..+. -+-+.+.+ |.+ +.|.+-|.||++.-..+.. |+...... -..........-
T Consensus 120 VtVVDl~------~~kvv~ei~---~PGC~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~ 189 (342)
T PF06433_consen 120 VTVVDLA------AKKVVGEID---TPGCWLIY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP 189 (342)
T ss_dssp EEEEETT------TTEEEEEEE---GTSEEEEE-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--
T ss_pred EEEEECC------CCceeeeec---CCCEEEEE-ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccccc
Confidence 1111111 111111111 11122222 333 6788999999999998884 44432110 011122222233
Q ss_pred EEcCCCCEEEEeeCCCcEEEEECCCccee--eeeec-----------CCceeEEEEccCCCeEE--Eeec------CCCc
Q 024407 140 AKAADGSHFLTGSLDKSAKLWDARTLELI--KTYVT-----------ERPVNAVTMSPLLDHVV--LGGG------QDAS 198 (268)
Q Consensus 140 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~------~~~~ 198 (268)
+++..+..++-.+.+|.|.--|+...... ..+.. +.-.+.+++++-...+. +-.+ +.+.
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 44455566666788888888887654321 11110 01123344444322222 2111 1223
Q ss_pred eEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC-eEEee-eCCCeEEEEeeCCC
Q 024407 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSG-GEDGYVRLHHFDPD 262 (268)
Q Consensus 199 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~lasg-s~Dg~i~i~~~~~~ 262 (268)
.||..|..++....+ +.- ..++.+|..+.+.+ .|.+. ..++.+.+|+....
T Consensus 270 eVWv~D~~t~krv~R------------i~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 270 EVWVYDLKTHKRVAR------------IPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEETTTTEEEEE------------EEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred EEEEEECCCCeEEEE------------EeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 455555555443332 221 13577899987664 55443 46899999987654
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.11 E-value=1.9 Score=37.09 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=50.3
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecC-
Q 024407 96 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE- 174 (268)
Q Consensus 96 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~- 174 (268)
++.+....+....++.+.+.+....+. + ....++..+++||++.+++.-..+|.+.+.+..-.+....+..+
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~ 258 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS 258 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc
Confidence 444555555555666666444322111 1 12358999999999999999999999988876555554444333
Q ss_pred -CceeEEEEcc
Q 024407 175 -RPVNAVTMSP 184 (268)
Q Consensus 175 -~~~~~~~~~~ 184 (268)
.....+.|.-
T Consensus 259 ~~~p~~~~WCG 269 (410)
T PF04841_consen 259 KSPPKQMAWCG 269 (410)
T ss_pred CCCCcEEEEEC
Confidence 3344555543
No 363
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.82 E-value=0.12 Score=39.72 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc
Q 024407 100 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 100 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~ 165 (268)
+.+..++++||.||-|+..-++...... .|. + .++..+++.+.|+.|.+|++-..
T Consensus 114 ~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~-------~-~~~e~~ivv~sd~~i~~a~~S~d 168 (238)
T KOG2444|consen 114 SSLGCVGAQDGRIRACNIKPNKVLGYVG---QHN-------F-ESGEELIVVGSDEFLKIADTSHD 168 (238)
T ss_pred cceeEEeccCCceeeeccccCceeeeec---ccc-------C-CCcceeEEecCCceEEeeccccc
Confidence 4467788999999999987766543322 233 1 23444455555555555544333
No 364
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.47 E-value=0.24 Score=27.30 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCC
Q 024407 89 GRINRAVWGPLNR---TIISAGEDAIVRIWDTETG 120 (268)
Q Consensus 89 ~~v~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~ 120 (268)
+.|.++.|+|... .|+-+-.-+.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4578899998544 7777778899999999863
No 365
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.39 E-value=2.2 Score=34.32 Aligned_cols=150 Identities=14% Similarity=0.069 Sum_probs=80.0
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE-
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL- 82 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (268)
..++.|+.|..+| +.+++++.......+....++..+...+....+++-+++. +.+.++..........+..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~------l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQ------LYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCc------cEEEEchhhccccccccccc
Confidence 3567889998888 8899984443333443344477777777666555555433 2222222211111000000
Q ss_pred -------EEecCCCCeEEEE--EcCCCCEEEEEeCCCcEEEEECCCC-----ceeeecccccCcccceEEEEEcCCCCEE
Q 024407 83 -------ILKGPQGRINRAV--WGPLNRTIISAGEDAIVRIWDTETG-----KLLKESDKETGHKKTITSLAKAADGSHF 148 (268)
Q Consensus 83 -------~~~~~~~~v~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~h~~~v~~v~~s~~~~~l 148 (268)
.-....+.+...+ -.+.+...+++.....|.+|..... +..+.+. -+..+..++|. ++.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~----lp~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS----LPDPPSSIAFL--GNKI 151 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE----cCCCcEEEEEe--CCEE
Confidence 0011223344333 2233444455556668999887663 2223332 34677888887 5567
Q ss_pred EEeeCCCcEEEEECCCcce
Q 024407 149 LTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 149 ~s~~~d~~i~iwd~~~~~~ 167 (268)
+.+..++ ..+.|+.++..
T Consensus 152 ~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 152 CVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred EEEeCCc-eEEEecCCCCc
Confidence 6666544 77889886654
No 366
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.07 E-value=2.5 Score=33.67 Aligned_cols=173 Identities=12% Similarity=0.153 Sum_probs=86.9
Q ss_pred EEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 83 ILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
.+.+-...+..++|+|+.+.| ++....+.|..+++ +|+.++.+... + -.-.-.+++..++.++++.-.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~-g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD-G-FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S-S--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC-C-CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 355666779999999987755 45567788888886 47777766432 2 24566778877787777776789999998
Q ss_pred CCCcc------eeeeee------cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccc
Q 024407 162 ARTLE------LIKTYV------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 229 (268)
Q Consensus 162 ~~~~~------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h 229 (268)
+.... ...++. .+.....++|.|....++++-...-..+..++............... +......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~ 169 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD---LDDDKLF 169 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH---HH-HT--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc---cccccce
Confidence 83321 112221 12346789999987777766443333344333311111111111100 0001112
Q ss_pred ccceEEEEECCCC-CeEEeeeCCCeEEEEeeCC
Q 024407 230 FGPINALAFNPDG-KSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 230 ~~~v~~~~~sp~~-~~lasgs~Dg~i~i~~~~~ 261 (268)
...+.+++++|.. .+++-..+...+-....++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQG 202 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT-
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCCC
Confidence 2346788888865 4455555666665554433
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.05 E-value=3 Score=34.55 Aligned_cols=133 Identities=10% Similarity=0.064 Sum_probs=75.3
Q ss_pred CcEEEeecCCC-------cEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCC
Q 024407 16 QTAKLWNVETG-------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 88 (268)
Q Consensus 16 ~tv~~wd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (268)
|.|.++++.+. +.+.....++++.++... ++.++++.+ ..+.+.++.... .-.+...+..+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~g-------~~l~v~~l~~~~---~l~~~~~~~~~- 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAVG-------NKLYVYDLDNSK---TLLKKAFYDSP- 129 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEET-------TEEEEEEEETTS---SEEEEEEE-BS-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEeec-------CEEEEEEccCcc---cchhhheecce-
Confidence 88999999884 233445567888888766 444444332 233344433221 01111112222
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
-.++++... +++++.|.....+.++..+. ++....+.. +..+..++++.+-.+++.++.+..+|.+.++...
T Consensus 130 ~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 130 FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 244554443 56899998888888774433 222222222 2345678888888666799999999999988765
No 368
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.04 E-value=2.5 Score=33.64 Aligned_cols=179 Identities=10% Similarity=0.147 Sum_probs=87.2
Q ss_pred CCCCC-CEEEEeecCCcEEEeecCCCcEEEEEecC--CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANS-MTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~-~~l~s~s~D~tv~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+||. .++++....+.|-..+. +|+.+..+... +....+.+..++.+++.. ... ..+....+.........
T Consensus 29 y~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~-Er~----~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 29 YNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSE-ERD----QRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEE-TTT----TEEEEEEE----TT--E
T ss_pred EcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEE-cCC----CcEEEEEEeccccccch
Confidence 57764 46777777788877776 47777777643 445666666555555443 111 11111111110000000
Q ss_pred ceEEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---Cceeee-----cccccCcccceEEEEEcCCC
Q 024407 79 ESVLIL-----KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET---GKLLKE-----SDKETGHKKTITSLAKAADG 145 (268)
Q Consensus 79 ~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~-----~~~~~~h~~~v~~v~~s~~~ 145 (268)
.....+ ..++..+..++|+|.++.|+.+-.....++|.+.. ...... +.........+.++.++|..
T Consensus 103 ~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 103 ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTT
T ss_pred hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCC
Confidence 111111 13566789999999998888887777777776653 111110 00011233457788888865
Q ss_pred CE-EEEeeCCCcEEEEECCCcceeeeeecC----------CceeEEEEccCCC
Q 024407 146 SH-FLTGSLDKSAKLWDARTLELIKTYVTE----------RPVNAVTMSPLLD 187 (268)
Q Consensus 146 ~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 187 (268)
.+ ++-+..+..|..+| +.++.+..+... .+...+++.+.+.
T Consensus 183 ~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 183 GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 54 45556677788888 556665554322 2577888888754
No 369
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.59 E-value=5.1 Score=35.69 Aligned_cols=153 Identities=12% Similarity=0.194 Sum_probs=82.3
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeeecccccCcccceEEEEEcCC----CCEEEEeeCCCcEEEEECC
Q 024407 90 RINRAVWGPLNRTIISAG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD----GSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~----~~~l~s~~~d~~i~iwd~~ 163 (268)
++..++|....+.+++.- ..|.+++=|. +.+. +=..|..+.|.|- ...|++.-.-..|.+|-+.
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viG-------qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIG-------QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCCc---cEee-------ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 566677764333444442 3333333221 2222 2345778888874 3467778888999999875
Q ss_pred Cc-----ceeeee--ec----CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 164 TL-----ELIKTY--VT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 164 ~~-----~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
-. +.+... .. +.-...+.|+|....+.+-...+..++...-....++.+ .++ -.+.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka------------Di~-~~G~ 157 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA------------DIK-TSGL 157 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEE------------ecc-CCce
Confidence 21 111111 11 112457789998766555555554333221111111111 111 2356
Q ss_pred eEEEEECCCCCeEEeeeCCCeEEEEeeCCCccee
Q 024407 233 INALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNI 266 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~~~ 266 (268)
|.|.+|.+||+.|+.+-. ..+.-|-|+..++++
T Consensus 158 IhCACWT~DG~RLVVAvG-SsLHSyiWd~~qKtL 190 (671)
T PF15390_consen 158 IHCACWTKDGQRLVVAVG-SSLHSYIWDSAQKTL 190 (671)
T ss_pred EEEEEecCcCCEEEEEeC-CeEEEEEecCchhhh
Confidence 999999999987654432 266666666666665
No 370
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.57 E-value=3.8 Score=37.15 Aligned_cols=61 Identities=21% Similarity=0.359 Sum_probs=42.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc--CCCCEEEEeeCCCcEEEEEC
Q 024407 100 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA--ADGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 100 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~~~l~s~~~d~~i~iwd~ 162 (268)
++..+.-+....+.|||.+.+..-....- .....|.+++|. |++..+++.+-.+.|.+|.-
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 34444444556688999988763322211 235778889866 78999999999999999964
No 371
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.48 E-value=0.56 Score=42.02 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=44.0
Q ss_pred CCCCEEEEEeCCCcEEEEECCC----Cceeeecccc-------------------cCcccceEEEEEcC----CCCEEEE
Q 024407 98 PLNRTIISAGEDAIVRIWDTET----GKLLKESDKE-------------------TGHKKTITSLAKAA----DGSHFLT 150 (268)
Q Consensus 98 ~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~-------------------~~h~~~v~~v~~s~----~~~~l~s 150 (268)
++...++.+..||.+...+... +......... ..-...+..++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3556778888999988877654 1111110000 00123445555555 7789999
Q ss_pred eeCCCcEEEEECCCcceeeee
Q 024407 151 GSLDKSAKLWDARTLELIKTY 171 (268)
Q Consensus 151 ~~~d~~i~iwd~~~~~~~~~~ 171 (268)
.+.|++||+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
No 372
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.47 E-value=5.2 Score=35.41 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=42.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeecccccC--cccceE-EEEEcCCCCEEEEee---------CCCcEEEEECCCccee
Q 024407 101 RTIISAGEDAIVRIWDTETGKLLKESDKETG--HKKTIT-SLAKAADGSHFLTGS---------LDKSAKLWDARTLELI 168 (268)
Q Consensus 101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~-~v~~s~~~~~l~s~~---------~d~~i~iwd~~~~~~~ 168 (268)
..++.++.++.|+-+|.++++.+........ ....+. ...+. + ..++.++ .++.+.-+|..+++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 5677788999999999999988765543211 000011 01111 2 3343433 3678889999988876
Q ss_pred eeee
Q 024407 169 KTYV 172 (268)
Q Consensus 169 ~~~~ 172 (268)
-++.
T Consensus 189 W~~~ 192 (488)
T cd00216 189 WRFY 192 (488)
T ss_pred eEee
Confidence 6543
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.37 E-value=4.7 Score=34.66 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=65.6
Q ss_pred EEEEEcCCCCEEEEE-eCCCc----EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC-----------
Q 024407 92 NRAVWGPLNRTIISA-GEDAI----VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK----------- 155 (268)
Q Consensus 92 ~~~~~~~~~~~l~s~-~~dg~----i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~----------- 155 (268)
....++|+|++++-+ +..|. ++++|+++++.+..... ......+.|.+++..|+-...+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~----~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE----NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE----EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc----ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 356789999987644 44444 99999999977653211 11222389999988876554333
Q ss_pred cEEEEECCCcceee--eeec--CCc-eeEEEEccCCCeEEEeecCCC--ceEEEeccCC
Q 024407 156 SAKLWDARTLELIK--TYVT--ERP-VNAVTMSPLLDHVVLGGGQDA--SAVTTTDHRA 207 (268)
Q Consensus 156 ~i~iwd~~~~~~~~--~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~ 207 (268)
.|..|.+.+..... -+.. +.. ...+..++++.++++...... ..+...+...
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 37788887654321 1111 222 456778888888776544433 3444444443
No 374
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=4.6 Score=34.46 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=97.2
Q ss_pred CCCCCCEEEEeec---CCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~---D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+|+++.++.+.. +.++.+-|.++.+.+...........+.+.|.+..+.+.... .+.+.+.......... .
T Consensus 123 ~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~----~~~v~vi~~~~~~v~~-~ 197 (381)
T COG3391 123 VDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSD----DNTVSVIDTSGNSVVR-G 197 (381)
T ss_pred ECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecC----CCeEEEEeCCCcceec-c
Confidence 6788888777777 688888898888888775544334778888877655554411 1111111111000000 0
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEe-eCC
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLD 154 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-~~d 154 (268)
...... +-...-..+.++|+|.++...-. ++.+...|..++......... +.. ....+.+.|++..+.+. +..
T Consensus 198 ~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~ 274 (381)
T COG3391 198 SVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQG 274 (381)
T ss_pred cccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecCC
Confidence 000001 11122356788999986654433 368999999887765432111 112 44567889999988877 445
Q ss_pred CcEEEEECCCcceeeeee
Q 024407 155 KSAKLWDARTLELIKTYV 172 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~ 172 (268)
+.+.+.|.++........
T Consensus 275 ~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 275 GTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CeEEEEeCCCCceeeeec
Confidence 889999999877766543
No 375
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.28 E-value=4.4 Score=37.57 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=26.5
Q ss_pred ccceEEEEECCC---CCeEEeeeCCCeEEEEeeCCC
Q 024407 230 FGPINALAFNPD---GKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 230 ~~~v~~~~~sp~---~~~lasgs~Dg~i~i~~~~~~ 262 (268)
...|..+.|+|. +..|+.=..|+++|+|++...
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 456889999996 467877788999999998743
No 376
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.21 E-value=0.68 Score=25.03 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=24.8
Q ss_pred CCCCEEEEee-cCCcEEEeecCCCcEEEEEecCC
Q 024407 4 ANSMTLITGS-ADQTAKLWNVETGAQLFTFNFDS 36 (268)
Q Consensus 4 ~d~~~l~s~s-~D~tv~~wd~~~~~~~~~~~~~~ 36 (268)
||++.|+++. .+++|.++|+++++.+..+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 5777666554 58999999999888877776543
No 377
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.15 E-value=0.92 Score=35.34 Aligned_cols=68 Identities=13% Similarity=0.178 Sum_probs=48.0
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeecc----ccc-------CcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc
Q 024407 97 GPLNRTIISAGEDAIVRIWDTETGKLLKESD----KET-------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 97 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~-------~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~ 165 (268)
...+.++++...+|.+++||+.+++.+.... ... .....|..+.++.+|.-+++-+ +|....|+..-+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 3457789999999999999999987653220 111 2445688888888887666654 477888886543
No 378
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.01 E-value=1.5 Score=39.69 Aligned_cols=108 Identities=11% Similarity=0.245 Sum_probs=59.9
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEe--cCCCceeeeeec---CCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
+.-+.-+.-.++.|||...+.....-. ..++|..++|.. ++.++.++-...+.+.+..+..-.. ..+.......
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~-~~p~w~~i~~ 120 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN-KGPSWAPIRK 120 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc-CCcccceeEE
Confidence 333334445689999998877555443 378899999875 3344444444333333322211111 0111111112
Q ss_pred EEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 024407 82 LILKGPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDT 117 (268)
Q Consensus 82 ~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 117 (268)
..+..++ .+|.+..|.++|..++.+ .+.+.|+|-
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 2345666 689999999998876643 455777764
No 379
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.96 E-value=3.6 Score=35.35 Aligned_cols=89 Identities=9% Similarity=0.067 Sum_probs=57.3
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcc-cceEEEEEc-C---------------
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-KTITSLAKA-A--------------- 143 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s-~--------------- 143 (268)
...+.+....+.++..+|.++++++...=|.|.++|+.++..++..+. .+ +++--+... .
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG---YRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG---YRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc---CccceEEEEEeecccccccccccccCCCC
Confidence 344666677789999999999888877779999999998766654331 11 111111100 0
Q ss_pred CCC-EEE-EeeCCCcEEEEECCCcceeeeee
Q 024407 144 DGS-HFL-TGSLDKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 144 ~~~-~l~-s~~~d~~i~iwd~~~~~~~~~~~ 172 (268)
... .|+ =+..-|.|-+|.++++..+..+.
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 011 222 34567889999999988776654
No 380
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.93 E-value=2.5 Score=33.56 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=51.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeee
Q 024407 100 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 171 (268)
Q Consensus 100 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 171 (268)
|+.++.|++.|.+++.+..+|..+..+.....-. ......+++..+..++.|++....|.++..++-+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk---~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK---VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhc---cceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 5678999999999999999996554333211111 11234678889999999999999999988776654
No 381
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.89 E-value=0.69 Score=25.53 Aligned_cols=30 Identities=7% Similarity=0.086 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCC---EEEEeeCCCcEEEEECCC
Q 024407 135 TITSLAKAADGS---HFLTGSLDKSAKLWDART 164 (268)
Q Consensus 135 ~v~~v~~s~~~~---~l~s~~~d~~i~iwd~~~ 164 (268)
.+.++.|+|++. .|+-+-.-+.|.++|+|+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 477899997554 778888889999999995
No 382
>PHA02713 hypothetical protein; Provisional
Probab=92.53 E-value=3.4 Score=37.19 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=27.2
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 99 LNRTIISAGEDA-----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 99 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
+|+..+.||.++ .+..||..+++-. .+............+ .-++...+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~-~~~~mp~~r~~~~~~--~~~g~IYviGG~~ 408 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWK-MLPDMPIALSSYGMC--VLDQYIYIIGGRT 408 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEE-ECCCCCcccccccEE--EECCEEEEEeCCC
Confidence 456667777654 4888999876432 221111111111112 2357777777765
No 383
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.41 E-value=0.52 Score=25.19 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=18.6
Q ss_pred cceEEEEECCCCCeEEeee-CC--CeEEEE
Q 024407 231 GPINALAFNPDGKSFSSGG-ED--GYVRLH 257 (268)
Q Consensus 231 ~~v~~~~~sp~~~~lasgs-~D--g~i~i~ 257 (268)
..-....|||||++|+-++ .+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3567889999999877444 55 666666
No 384
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.41 E-value=2.5 Score=36.91 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 99 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 99 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
.+.+++.||..|.||+||--.-+ .+.. .++-...|..+..+.+|.++++.+. .+|.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~r-AKta--lP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKR-AKTA--LPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcch-hhhc--CcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 35689999999999999853222 1211 1244567888999999998876654 667788865
No 385
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.41 E-value=4.9 Score=35.28 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=75.7
Q ss_pred CCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC-------CEEEEeeCCCcEEEEECCCcceeeee
Q 024407 100 NRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-------SHFLTGSLDKSAKLWDARTLELIKTY 171 (268)
Q Consensus 100 ~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-------~~l~s~~~d~~i~iwd~~~~~~~~~~ 171 (268)
.+.| .++.....++-.|++.|+.+..... +.. |+-+.+.|+. ..-+.|-.|+.|.=||+|-... ..+
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~---~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl 419 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKF---EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKL 419 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeec---cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-cee
Confidence 3443 4666667788889999998765432 222 5455555543 2345677789999999983211 011
Q ss_pred ecCCceeEEEEccC-CCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeC
Q 024407 172 VTERPVNAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE 250 (268)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~ 250 (268)
.... .-.++.- .-.++++.+.+..++...+. .+++|++.......-+++--.+|..+..+.||++|+..+
T Consensus 420 ~~~q---~kqy~~k~nFsc~aTT~sG~IvvgS~~G-----dIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc- 490 (644)
T KOG2395|consen 420 AVVQ---SKQYSTKNNFSCFATTESGYIVVGSLKG-----DIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC- 490 (644)
T ss_pred eeee---ccccccccccceeeecCCceEEEeecCC-----cEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-
Confidence 1000 0000000 00112222222222222222 244555533322234556667899999999999988655
Q ss_pred CCeEEEEe
Q 024407 251 DGYVRLHH 258 (268)
Q Consensus 251 Dg~i~i~~ 258 (268)
+.++.+-.
T Consensus 491 ~tyLlLi~ 498 (644)
T KOG2395|consen 491 KTYLLLID 498 (644)
T ss_pred ccEEEEEE
Confidence 44554433
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.13 E-value=3.9 Score=35.16 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=46.5
Q ss_pred CCcEEEeecCCCcEEEEEecCCC---ceeeeeecC--CeEEEEEcCCCcccccceEeeeeeeC-CCCCCCceEEEEecC-
Q 024407 15 DQTAKLWNVETGAQLFTFNFDSP---ARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARD-PADQGGESVLILKGP- 87 (268)
Q Consensus 15 D~tv~~wd~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 87 (268)
-.++.+||+.+.+.+..+..... +..+.|..+ .....++++- ...+|++... ......+.+..+..-
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aL------ss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCAL------SSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--------EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEec------cceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 46899999999999998886432 344555433 2222222211 1112222210 000111122222110
Q ss_pred ----------------CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCC
Q 024407 88 ----------------QGRINRAVWGPLNRTII-SAGEDAIVRIWDTETG 120 (268)
Q Consensus 88 ----------------~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~ 120 (268)
..-|+++..|.|.++|. ++-..|.||.||+...
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 23478999999999885 5568999999999764
No 387
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.96 E-value=8.8 Score=34.28 Aligned_cols=154 Identities=12% Similarity=0.139 Sum_probs=90.3
Q ss_pred CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCC----CEEEEEeCCC
Q 024407 35 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN----RTIISAGEDA 110 (268)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~s~~~dg 110 (268)
-+|+++++|..|.++++..-- +.+. +......+ .-|.-.-|..+.|.|.+ ..+++.-..+
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~----l~~g--------E~kfGds~----viGqFEhV~GlsW~P~~~~~~paLLAVQHkk 82 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQ----LHNG--------EPKFGDSK----VIGQFEHVHGLSWAPPCTADTPALLAVQHKK 82 (671)
T ss_pred hccccceEecCCCEEEEEeee----eeCC--------ccccCCcc----EeeccceeeeeeecCcccCCCCceEEEeccc
Confidence 478899999988887665320 0000 00000111 11333457889999853 3677788899
Q ss_pred cEEEEECCC-----Cceeeeccccc--CcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc--ceeeeeecCCceeEEE
Q 024407 111 IVRIWDTET-----GKLLKESDKET--GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYVTERPVNAVT 181 (268)
Q Consensus 111 ~i~iwd~~~-----~~~~~~~~~~~--~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~ 181 (268)
.|-+|.+-. ++.....-.+- ..+.---.+.|+|....|+.-.....-.+++.+.. ++...+.....+.+.+
T Consensus 83 hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCAC 162 (671)
T PF15390_consen 83 HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCAC 162 (671)
T ss_pred eEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEE
Confidence 999998752 33332211110 11111234568888888877666555556776643 2223344566788999
Q ss_pred EccCCCeEEEeecCCCceEEEecc
Q 024407 182 MSPLLDHVVLGGGQDASAVTTTDH 205 (268)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~~d~ 205 (268)
|.++|..++++.|. ....+.||.
T Consensus 163 WT~DG~RLVVAvGS-sLHSyiWd~ 185 (671)
T PF15390_consen 163 WTKDGQRLVVAVGS-SLHSYIWDS 185 (671)
T ss_pred ecCcCCEEEEEeCC-eEEEEEecC
Confidence 99999888877665 344555654
No 388
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=91.75 E-value=2.1 Score=36.63 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=52.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee-------------------------eccc---------------c
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK-------------------------ESDK---------------E 129 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------------------~~~~---------------~ 129 (268)
.|+.+.|.++..-|++|-..|.|.+|....++... .+.. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47888899988888889999999988654322110 0000 0
Q ss_pred cCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeee
Q 024407 130 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170 (268)
Q Consensus 130 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 170 (268)
...+.+|++++.| |=-.++.|..+|++.+.|+|....+..
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~ 122 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN 122 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee
Confidence 1235789999887 444888999999999999998766554
No 389
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.68 E-value=1.8 Score=36.42 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=50.5
Q ss_pred CCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeeh-----------hhhhh
Q 024407 154 DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK-----------ILQEE 222 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~~~ 222 (268)
.+.+.+||+.+++...............|+|++..++...+. .+...+...+.......+. ...++
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~---nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDN---NLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETT---EEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecC---ceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 466889999987654333334567889999998887776543 3444444333222111111 00111
Q ss_pred hccccccccceEEEEECCCCCeEEeeeCC-CeEEE
Q 024407 223 IGGVKGHFGPINALAFNPDGKSFSSGGED-GYVRL 256 (268)
Q Consensus 223 ~~~~~~h~~~v~~~~~sp~~~~lasgs~D-g~i~i 256 (268)
+ + +.-..+.||||+++||....| ..++.
T Consensus 99 v--~----~~~~~~~WSpd~~~la~~~~d~~~v~~ 127 (353)
T PF00930_consen 99 V--F----DRRSAVWWSPDSKYLAFLRFDEREVPE 127 (353)
T ss_dssp T--S----SSSBSEEE-TTSSEEEEEEEE-TTS-E
T ss_pred c--c----ccccceEECCCCCEEEEEEECCcCCce
Confidence 0 1 112468999999999876644 34443
No 390
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=8.2 Score=34.00 Aligned_cols=93 Identities=11% Similarity=0.167 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEe
Q 024407 135 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF 214 (268)
Q Consensus 135 ~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 214 (268)
.|..+..++.|+.++-++.+|-+.|+=++..-.-..+..+.++..+...+.+.. +
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-------------------------~ 159 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-------------------------F 159 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-------------------------e
Confidence 467777889999999999999887775443221111222212111111111111 1
Q ss_pred eehhhhhhhccccccccceEEEEECCCC---CeEEeeeCCCeEEEEeeCCC
Q 024407 215 FDKILQEEIGGVKGHFGPINALAFNPDG---KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~---~~lasgs~Dg~i~i~~~~~~ 262 (268)
|.. ..| -.+..++|+|+. ..|..=+.|..||||....+
T Consensus 160 fts---------s~~-ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 160 FTS---------STS-LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred ecc---------CCc-eeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 111 011 136678899976 45666678999999988755
No 391
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.46 E-value=8.6 Score=33.19 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=38.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCcee-eecccccCcccceEEEEEc---C-CCCEEEEeeCCCcEEEEECC
Q 024407 100 NRTIISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKA---A-DGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 100 ~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s---~-~~~~l~s~~~d~~i~iwd~~ 163 (268)
...|+.||..|.+|||+...+... ..+-.+..-..+|..+..- + .....++.-.-..+.+|.+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~ 105 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS 105 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Confidence 358999999999999998654311 1111112235678777643 2 22234444666778888773
No 392
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.42 E-value=10 Score=33.97 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=81.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeecccccCcc--cceEEEEEcCCCCEEEEee------CCCcEEEEECCCcceeeeee
Q 024407 101 RTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGS------LDKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~ 172 (268)
..++.++.|+.+.-.|.++|+.+.+.... .+. ..+++--.-.++ .++.++ .++.|.-+|.++++.+-++.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccc-cccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 45677888999999999999987654321 111 111111011134 344432 26889999999987665532
Q ss_pred cCCc---------------------------------eeEEEEccCCCeEEEeecC----C----------CceEEEecc
Q 024407 173 TERP---------------------------------VNAVTMSPLLDHVVLGGGQ----D----------ASAVTTTDH 205 (268)
Q Consensus 173 ~~~~---------------------------------~~~~~~~~~~~~~~~~~~~----~----------~~~i~~~d~ 205 (268)
.-.. -...++.|....+.+..+. . ...+...|.
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 1100 0122445544555555433 1 124566777
Q ss_pred CCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC---eEEeeeCCCeEEEEeeCC
Q 024407 206 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK---SFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~lasgs~Dg~i~i~~~~~ 261 (268)
++|++...+... +...-.+.... ...-+.+..+|+ .++.+..+|.+.+.+-+.
T Consensus 279 ~TG~~~W~~Q~~--~~D~wD~d~~~-~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t 334 (527)
T TIGR03075 279 DTGKIKWHYQTT--PHDEWDYDGVN-EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN 334 (527)
T ss_pred ccCCEEEeeeCC--CCCCccccCCC-CcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence 788776554321 11100111111 111223334665 688889999887765543
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.04 E-value=7.3 Score=31.61 Aligned_cols=105 Identities=10% Similarity=0.180 Sum_probs=68.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~ 165 (268)
|-...+.+++|+|+.+.|++......-.++=...|+.++.+...--| -.-.+.+..++.+.++--.++++.++.+...
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--DPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--ChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44556899999999999998888888777766678887766543222 2234566667777777777788877766544
Q ss_pred ceeee-----ee-----c-CCceeEEEEccCCCeEEEe
Q 024407 166 ELIKT-----YV-----T-ERPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 166 ~~~~~-----~~-----~-~~~~~~~~~~~~~~~~~~~ 192 (268)
..+.. +. . +.....++|.|....++++
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a 198 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA 198 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE
Confidence 22111 11 1 2345677888876666554
No 394
>PRK13616 lipoprotein LpqB; Provisional
Probab=91.00 E-value=12 Score=34.02 Aligned_cols=114 Identities=18% Similarity=0.082 Sum_probs=59.9
Q ss_pred cceEEEEEcCCCCEEEEee------CCC--cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEecc
Q 024407 134 KTITSLAKAADGSHFLTGS------LDK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 205 (268)
Q Consensus 134 ~~v~~v~~s~~~~~l~s~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 205 (268)
..+...+++++|..++... .|. .|.+++... +. ..+........-.|+|+++.+.+...... .....+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~-~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSLDADAVWVVVDGNT-VVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECCCCCceEEEecCcc-eEEEecc
Confidence 3577889999999887655 244 444445422 22 22323334566789998776665532211 1222211
Q ss_pred -CCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEE
Q 024407 206 -RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256 (268)
Q Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i 256 (268)
..+... ..+...++ ... .....|..+.|||||..+|--. +|.|.|
T Consensus 427 ~~~gql~--~~~vd~ge-~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLA--RTPVDASA-VAS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEE--EEeccCch-hhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 111111 11110011 110 1234699999999999877655 477766
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.96 E-value=0.56 Score=36.22 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=34.5
Q ss_pred EEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 103 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
+..-+.|+.|+-++++..+.-.+... -|... ......+.-++.++.+|.|.+|...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~--~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n 88 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSER--FIDEG---QRVVTASAKLMVGTSDGAVYVFNWN 88 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhh--hhhcc---eeecccCceEEeecccceEEEecCC
Confidence 34557888888888876543222111 12222 1122345678999999999999877
No 396
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.85 E-value=1.5 Score=23.53 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCCCEEEE-eeCCCcEEEEECCCcceeeeeecC
Q 024407 143 ADGSHFLT-GSLDKSAKLWDARTLELIKTYVTE 174 (268)
Q Consensus 143 ~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~ 174 (268)
|++..|.+ .-.+++|.++|+.+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 45665554 446889999999888777665543
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.64 E-value=8.5 Score=31.66 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=73.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE-CCC
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD-ART 164 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd-~~~ 164 (268)
+..+.+..+.-+++|++++++..-....-||.-... ...... .-+..+..+.|.+++...+.+ ..+.|+.=+ ...
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r--~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNR--NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEcc--CccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence 445667888889999988776555555577754321 111111 235689999999998765544 778888776 222
Q ss_pred cceeee----e-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 165 LELIKT----Y-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 165 ~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
.+.-.. . .....+..+++.+. ..+.++++.+. .+...|.-. .|.+... ...-++....+.|.
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~-~~~wa~gg~G~-l~~S~DgGk------tW~~~~~-----~~~~~~n~~~i~f~ 284 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPP-NEIWAVGGSGT-LLVSTDGGK------TWQKDRV-----GENVPSNLYRIVFV 284 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSS-S-EEEEESTT--EEEESSTTS------S-EE-GG-----GTTSSS---EEEEE
T ss_pred ccccccccCCcccCceeeEEEEecCC-CCEEEEeCCcc-EEEeCCCCc------cceECcc-----ccCCCCceEEEEEc
Confidence 222111 1 11224677888876 45555555543 333333221 1211110 01123457889997
Q ss_pred CCCCeEEeeeCCCeEEEE
Q 024407 240 PDGKSFSSGGEDGYVRLH 257 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~ 257 (268)
++.+-+|. ++||.+.-|
T Consensus 285 ~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 285 NPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp ETTEEEEE--STTEEEEE
T ss_pred CCCceEEE-CCCcEEEEe
Confidence 76677775 557877544
No 398
>PHA02713 hypothetical protein; Provisional
Probab=89.61 E-value=15 Score=33.24 Aligned_cols=54 Identities=7% Similarity=-0.035 Sum_probs=27.1
Q ss_pred cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC------CcEEEEECCC-cce
Q 024407 111 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLWDART-LEL 167 (268)
Q Consensus 111 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d------~~i~iwd~~~-~~~ 167 (268)
.+..||.++.+-.. +.......... +++ .-++...+.|+.+ ..+..||+.+ .+-
T Consensus 433 ~ve~YDP~td~W~~-v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 433 KVIRYDTVNNIWET-LPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW 493 (557)
T ss_pred eEEEECCCCCeEee-cCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCe
Confidence 47788988764321 11110011111 122 2356666777654 2467899887 443
No 399
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.41 E-value=4.4 Score=37.56 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=52.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------Cce--ee-ecc-----cccCcccceEEEEEcCC---CCEE
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTET----------GKL--LK-ESD-----KETGHKKTITSLAKAAD---GSHF 148 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~--~~-~~~-----~~~~h~~~v~~v~~s~~---~~~l 148 (268)
.|..+..+|+|.+++..|..|...+. +.. ++. .+ ... ........|..+.|+|. +.+|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEE-eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 57889999999999888887765543 321 111 11 110 01234567899999986 5899
Q ss_pred EEeeCCCcEEEEECCCc
Q 024407 149 LTGSLDKSAKLWDARTL 165 (268)
Q Consensus 149 ~s~~~d~~i~iwd~~~~ 165 (268)
+.-+.|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999753
No 400
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=88.64 E-value=13 Score=30.78 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=58.4
Q ss_pred EecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC--Cceeee--cccccCcccceEEEEEcCCCCEEEEeeCCC-cE
Q 024407 84 LKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTET--GKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDK-SA 157 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~--~~~~~~--~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~-~i 157 (268)
+.++-.--+.++||||++.++.+ +..+.|.-|++.. +..-.. .......+...=.++...+|++-+++-.+| .|
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceE
Confidence 33333334679999999887766 4558888887763 111100 000111233344566778888776555554 89
Q ss_pred EEEECCCcceeeeeecC-CceeEEEE
Q 024407 158 KLWDARTLELIKTYVTE-RPVNAVTM 182 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~-~~~~~~~~ 182 (268)
..|++. ++.+..+..+ ..+.+++|
T Consensus 238 ~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred EEECCC-CcEEEEEECCCCCCccceE
Confidence 999998 7877777655 33444443
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.36 E-value=19 Score=32.60 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=47.0
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC-----cEEEEECCCcce
Q 024407 99 LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLEL 167 (268)
Q Consensus 99 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~ 167 (268)
.|+..++||.+ .++..||..+++... ......-+... .++ .-++.+.+.++.|+ +|..||+++.+.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~-~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTL-IAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceee-cCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 45666777755 456788988865322 11110001111 122 23567777888776 367788887654
Q ss_pred eeeeecCCceeEEEEccCCCeEEEeecCCC
Q 024407 168 IKTYVTERPVNAVTMSPLLDHVVLGGGQDA 197 (268)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (268)
...-....+.........+..+.+.+|.++
T Consensus 504 ~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred eEcccCccccccccEEEECCEEEEEecccC
Confidence 322111122222222233345555555443
No 402
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.91 E-value=15 Score=30.87 Aligned_cols=240 Identities=14% Similarity=0.129 Sum_probs=103.7
Q ss_pred CCCCCEEEEe---------ecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccc--eEeeeeee
Q 024407 3 QANSMTLITG---------SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA--IHVKRIAR 71 (268)
Q Consensus 3 s~d~~~l~s~---------s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 71 (268)
|||++.++.. +..+...+||+++++..........+....|+|+++.++...+..+.+... -...++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~ 80 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT 80 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence 7899887773 345788889998875543322346678888999776555544332211110 01111111
Q ss_pred CCC--CCCCceEEEEecC-CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeecccccCcc--cceEEEEEcCCC
Q 024407 72 DPA--DQGGESVLILKGP-QGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADG 145 (268)
Q Consensus 72 ~~~--~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~ 145 (268)
... ...|.+-.+..+- -+.-..+-|+|||++|+..- .+..|+.+.+... . ..+. -.+..+.+...|
T Consensus 81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~------~--~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY------S--PPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE------S--SSTESS-EEEEEE--BTT
T ss_pred ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc------C--CccccCCcccccccCCCC
Confidence 100 0000000000000 11224578999999988654 3344444432110 0 0010 123444443333
Q ss_pred CEEEEeeCCCcEEEEECCCcceeeee------ecCCceeEEEEccCCCeEEEee-cCCC--ceEEEeccCCCeeeeEeee
Q 024407 146 SHFLTGSLDKSAKLWDARTLELIKTY------VTERPVNAVTMSPLLDHVVLGG-GQDA--SAVTTTDHRAGKFEAKFFD 216 (268)
Q Consensus 146 ~~l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~i~~~d~~~~~~~~~~~~ 216 (268)
.--. .-.+.++|+++++....- ..+.-+..+.|.+++..+++.. .... ..+...|...+......-.
T Consensus 153 ~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 153 DPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp S-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred CcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 2111 123567888877653211 1233567888888765344321 1221 1222333333322221100
Q ss_pred hhhhhhhccccccccceEEEEEC-CCCC-eEEeeeCCCeEEEEeeCCC
Q 024407 217 KILQEEIGGVKGHFGPINALAFN-PDGK-SFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~~~~s-p~~~-~lasgs~Dg~i~i~~~~~~ 262 (268)
. ..+--..-....|. +++. +|.....||.-+|+.++.+
T Consensus 229 ~--------~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 229 T--------SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp E--------SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred c--------CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 0 00111112244543 5554 4445558888888777654
No 403
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.67 E-value=5.9 Score=25.92 Aligned_cols=42 Identities=19% Similarity=0.048 Sum_probs=26.6
Q ss_pred eCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEee
Q 024407 152 SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (268)
..+|.+.-||+++++..-....=.-.+.++++++++.++++-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 346889999999876422222223578899999888777653
No 404
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=87.49 E-value=2.2 Score=22.70 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=24.9
Q ss_pred EEEEeecCCcEEEeecCCCcEEEEEecCCC
Q 024407 8 TLITGSADQTAKLWNVETGAQLFTFNFDSP 37 (268)
Q Consensus 8 ~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~ 37 (268)
.++.++.||.+.-.|.++|+.++.++....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 456669999999999999999998875443
No 405
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=87.35 E-value=22 Score=32.21 Aligned_cols=140 Identities=17% Similarity=0.216 Sum_probs=67.1
Q ss_pred CCCEEEEEeCCCc-----EEEEECCCCceeeecccccCcccceEEEE-EcCCCCEEEEeeCCC------cEEEEECCCcc
Q 024407 99 LNRTIISAGEDAI-----VRIWDTETGKLLKESDKETGHKKTITSLA-KAADGSHFLTGSLDK------SAKLWDARTLE 166 (268)
Q Consensus 99 ~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~h~~~v~~v~-~s~~~~~l~s~~~d~------~i~iwd~~~~~ 166 (268)
+|...+.||.||. +..||.++.+--.... ...+....+ ..-++...++++.|+ ++..||+.+.+
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~----m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP----MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC----CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 4556688888854 7788887764321111 111222222 224677777877544 56788888765
Q ss_pred eeeeeecCCceeEEEEccCCCeEEEeecCCCc----eEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 167 LIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS----AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
....-....+.......-.++.+.+.+|.+.. .+..+|.....+... ..++.....+....+ ++
T Consensus 456 W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v----------~~m~~~rs~~g~~~~--~~ 523 (571)
T KOG4441|consen 456 WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV----------APMTSPRSAVGVVVL--GG 523 (571)
T ss_pred eeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc----------ccCccccccccEEEE--CC
Confidence 43221111111111122223456666665531 123344443332211 112222233333332 46
Q ss_pred CeEEeeeCCCeE
Q 024407 243 KSFSSGGEDGYV 254 (268)
Q Consensus 243 ~~lasgs~Dg~i 254 (268)
+..|.|+.||.-
T Consensus 524 ~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 524 KLYAVGGFDGNN 535 (571)
T ss_pred EEEEEecccCcc
Confidence 677888888764
No 406
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.71 E-value=15 Score=29.40 Aligned_cols=112 Identities=23% Similarity=0.176 Sum_probs=56.7
Q ss_pred ceEEEEEcCCCCEEEEee--C-CCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee
Q 024407 135 TITSLAKAADGSHFLTGS--L-DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 211 (268)
Q Consensus 135 ~v~~v~~s~~~~~l~s~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 211 (268)
.+...+.++++..++... . ...|.++.. +...........+..-.|+++ ..+.+....+.......+...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCC-CCEEEEEcCCCceEEEEecCCCcce
Confidence 577889999999887665 2 233444443 332233223335566677877 4444443322222222111111111
Q ss_pred eEeeehhhhhhhccccccccceEEEEECCCCCeEEeee---CCCeEEEEe
Q 024407 212 AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG---EDGYVRLHH 258 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs---~Dg~i~i~~ 258 (268)
....+ ...-...|.++.+||||.-+|.-. .++.|.|-.
T Consensus 102 ~~~v~---------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 102 PVEVD---------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred eEEec---------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence 11000 001111799999999998765444 356676643
No 407
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.69 E-value=5.3 Score=34.36 Aligned_cols=90 Identities=17% Similarity=0.253 Sum_probs=50.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEE---EECCC-C----ceeeecccccCcc--cceEEEEEc-----------CCCCEEEEe
Q 024407 93 RAVWGPLNRTIISAGEDAIVRI---WDTET-G----KLLKESDKETGHK--KTITSLAKA-----------ADGSHFLTG 151 (268)
Q Consensus 93 ~~~~~~~~~~l~s~~~dg~i~i---wd~~~-~----~~~~~~~~~~~h~--~~v~~v~~s-----------~~~~~l~s~ 151 (268)
.+..+|+++.++.+..+..+.+ |+... + +..........++ ..|+++.+- +|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 3567889999988877777665 53311 1 1111000001121 456665533 345688999
Q ss_pred eCCCcEEEEECCCcceeeeeecCCceeEEEE
Q 024407 152 SLDKSAKLWDARTLELIKTYVTERPVNAVTM 182 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 182 (268)
..+|.|++|.....-.+....++.++..+..
T Consensus 86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~ 116 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKC 116 (415)
T ss_pred ecccEEEEEeccchHHHHHhcCccceEEEEe
Confidence 9999999998754322222334445554443
No 408
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.56 E-value=2.9 Score=35.99 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=45.4
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee-ecccc-cC-cccceE-EEEEcCCCCEEEEeeCCCcEEE
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK-ESDKE-TG-HKKTIT-SLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~-~~-h~~~v~-~v~~s~~~~~l~s~~~d~~i~i 159 (268)
+...-..|..+-..|+|+.+..-+. ..+.++++.+..... .+-.+ .+ ....|+ .+..-..+..++....||-|.=
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4444556777888999997765544 678899887654321 11111 11 112232 1112234566788888888864
Q ss_pred E-ECCC
Q 024407 160 W-DART 164 (268)
Q Consensus 160 w-d~~~ 164 (268)
| |.|.
T Consensus 295 WFdvr~ 300 (733)
T COG4590 295 WFDVRR 300 (733)
T ss_pred eeeeec
Confidence 4 5554
No 409
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=86.50 E-value=2.9 Score=24.58 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=22.6
Q ss_pred eEEEEECCCCCeEEeee-----CCCeEEEEeeCCC
Q 024407 233 INALAFNPDGKSFSSGG-----EDGYVRLHHFDPD 262 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs-----~Dg~i~i~~~~~~ 262 (268)
+.+++.-|||++++.|. .+....|.|+.++
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~D 37 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNAD 37 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCC
Confidence 56788899999999885 3445667777765
No 410
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.42 E-value=16 Score=29.66 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=16.4
Q ss_pred CCCCCCEEEEeecC-----CcEEEeecC
Q 024407 2 FQANSMTLITGSAD-----QTAKLWNVE 24 (268)
Q Consensus 2 fs~d~~~l~s~s~D-----~tv~~wd~~ 24 (268)
|||||.+|+..=.| |.|=+||..
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 78888888876655 566677654
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.38 E-value=31 Score=32.93 Aligned_cols=135 Identities=19% Similarity=0.250 Sum_probs=74.2
Q ss_pred EEEEECCCCceeeecccc-cCcccceEEEEEcCC-CCEEEEeeC----------CCcEEEEECCCcc---eeeeeecCCc
Q 024407 112 VRIWDTETGKLLKESDKE-TGHKKTITSLAKAAD-GSHFLTGSL----------DKSAKLWDARTLE---LIKTYVTERP 176 (268)
Q Consensus 112 i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~-~~~l~s~~~----------d~~i~iwd~~~~~---~~~~~~~~~~ 176 (268)
++++|..+-+..+..+.. .+.-..+.++.|..| +.+++.|+. .|+|.+|.+.... .+........
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 667777665554432211 112234555567766 556666643 5677777665422 2222222233
Q ss_pred eeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEE
Q 024407 177 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256 (268)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i 256 (268)
+.++. ...+.++++.+.. +.. ++-.....++.-++|..++..+.+.-.|..+|.|..=+.|.+
T Consensus 832 v~aL~--~fngkllA~In~~---vrL------------ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 832 VYALV--EFNGKLLAGINQS---VRL------------YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeehh--hhCCeEEEecCcE---EEE------------EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 33333 2234455443321 111 111112234445677888999999999999999999999988
Q ss_pred EeeCCCc
Q 024407 257 HHFDPDY 263 (268)
Q Consensus 257 ~~~~~~~ 263 (268)
-+++.+.
T Consensus 895 l~y~~~e 901 (1096)
T KOG1897|consen 895 LQYKGDE 901 (1096)
T ss_pred EEEeccC
Confidence 7777653
No 412
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=86.25 E-value=2 Score=21.68 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEEeecCCcEEEeecCCCcEEEEE
Q 024407 8 TLITGSADQTAKLWNVETGAQLFTF 32 (268)
Q Consensus 8 ~l~s~s~D~tv~~wd~~~~~~~~~~ 32 (268)
.++.++.++.+...|.++|+..+.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6888999999999999999887653
No 413
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=14 Score=28.52 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=67.2
Q ss_pred EeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee---cCCc---eeE
Q 024407 106 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERP---VNA 179 (268)
Q Consensus 106 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~---~~~ 179 (268)
.-.||....+|.++-+.+..+. .+..-+.++ .|+..|+.+....++..=|+++.....++. ...+ .+.
T Consensus 107 Tw~egvaf~~d~~t~~~lg~~~----y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE 180 (262)
T COG3823 107 TWKEGVAFKYDADTLEELGRFS----YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE 180 (262)
T ss_pred EeccceeEEEChHHhhhhcccc----cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccc
Confidence 3578888899987755443321 233344443 466667777777888888888765544432 1112 233
Q ss_pred EEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC-CeEEeee
Q 024407 180 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGG 249 (268)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~lasgs 249 (268)
+.|-. +.+.+..=.. ..|..-+...|++....--.....+......|.+..+-+++-|++ ++++||-
T Consensus 181 LE~Vd--G~lyANVw~t-~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 181 LEWVD--GELYANVWQT-TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred eeeec--cEEEEeeeee-cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 33332 2222211000 012222344444332111001111222233455667889999977 6777764
No 414
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.73 E-value=16 Score=29.09 Aligned_cols=150 Identities=11% Similarity=0.060 Sum_probs=78.3
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE-CCCc
Q 024407 90 RINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD-ARTL 165 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd-~~~~ 165 (268)
.+.+..++++++.++... ....++++... ....... .+ ..++.-.|++++...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~--~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL--TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec--cC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 577889999998776555 33345454433 2222221 11 2455667888877666656566666663 3333
Q ss_pred ceee-eee--cCC-ceeEEEEccCCCeEEEeecC---CCceEEE-eccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 166 ELIK-TYV--TER-PVNAVTMSPLLDHVVLGGGQ---DASAVTT-TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 166 ~~~~-~~~--~~~-~~~~~~~~~~~~~~~~~~~~---~~~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
+... ... ... .+..+.++|++..+++.... ....+.. .....+ ....+ .............+.+++
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g-~~~~l-----~~~~~~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG-VPRRL-----TGPRRVAPPLLSDVTDVA 172 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC-Cccee-----ccceEecccccCcceeee
Confidence 2211 111 112 78899999999988776521 1112211 111111 00000 001111112235789999
Q ss_pred ECCCCCeEEeeeCC
Q 024407 238 FNPDGKSFSSGGED 251 (268)
Q Consensus 238 ~sp~~~~lasgs~D 251 (268)
|.+++..++.+...
T Consensus 173 W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 173 WSDDSTLVVLGRSA 186 (253)
T ss_pred ecCCCEEEEEeCCC
Confidence 99999886655543
No 415
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.66 E-value=23 Score=30.67 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=80.5
Q ss_pred CCCEEEEeecCCcEEEeecCCCc-----EEEEEecCCCceeeeeec---C--CeEEEEEcCCCcccccceEeeeeeeCC-
Q 024407 5 NSMTLITGSADQTAKLWNVETGA-----QLFTFNFDSPARSVDFAV---G--DKLAVITTDPFMELNSAIHVKRIARDP- 73 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~-----~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (268)
+...+++||..|.+|++++.... .+...+...||..+.... + ...+++-+.. .+.+..+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~------kl~vY~v~~~~g 109 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPR------KLSVYSVSLVDG 109 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCC------EEEEEEEEecCC
Confidence 55689999999999999986533 455566677777766542 1 1122222221 12222221110
Q ss_pred C--CCCCceEEEEecCCC--CeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC
Q 024407 74 A--DQGGESVLILKGPQG--RINRAVWGPLN-----RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD 144 (268)
Q Consensus 74 ~--~~~~~~~~~~~~~~~--~v~~~~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~ 144 (268)
. ....-.+..+-.|.- .-..++.-|-| ..+..=+.||.+.+|+-+.--..+.+.. --.++| +.+.+.
T Consensus 110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgP---l~Y~~~ 185 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGP---LCYCPR 185 (418)
T ss_pred CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcC---eEEeec
Confidence 0 011112233334432 22334444432 2455569999999999765332222221 124444 455667
Q ss_pred CCEEEEeeCCCcEEEEEC
Q 024407 145 GSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 145 ~~~l~s~~~d~~i~iwd~ 162 (268)
...+++++.+.+|.-|..
T Consensus 186 tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 186 TDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCEEEEecCceeEEEecH
Confidence 778899988888887764
No 416
>PHA03098 kelch-like protein; Provisional
Probab=85.56 E-value=26 Score=31.31 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=34.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC------CcEEEEECCCcce
Q 024407 99 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLWDARTLEL 167 (268)
Q Consensus 99 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d------~~i~iwd~~~~~~ 167 (268)
+++.++.||.+ ..+..||..+++-.. ..... ++..-.+++ ..++..++.|+.+ ..+..||+.+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~lp-~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWRE-EPPLI-FPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceee-CCCcC-cCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 45666777765 347788887764322 11111 111111112 2356666666632 3578899887543
No 417
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=85.34 E-value=20 Score=29.65 Aligned_cols=156 Identities=19% Similarity=0.130 Sum_probs=74.2
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee
Q 024407 94 AVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 94 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 172 (268)
..|.|+.. .+.+--..+.|.-||..+++..... ++..+.++..-..+..|+++... +.++++.++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-----~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP-----SPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-----CCCCcccceeecCCCeEEEEccc--cEEEeccCCceeEEec
Confidence 45677766 4456678889999999877543211 23344444333344455555433 5566665544422221
Q ss_pred c------CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEE
Q 024407 173 T------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS 246 (268)
Q Consensus 173 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~la 246 (268)
. ....+.....|++...+-..+.. ..-.......+ ..+.++. .....+....|...-+.|+||||++.+.
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~-~~~~~~~~~~G--~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYF-DLGKSEERPTG--SLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCcc-ccCccccCCcc--eEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEE
Confidence 1 12355667777654333222200 00000001111 1111111 1111122233344457899999997655
Q ss_pred eee-CCCeEEEEeeC
Q 024407 247 SGG-EDGYVRLHHFD 260 (268)
Q Consensus 247 sgs-~Dg~i~i~~~~ 260 (268)
... ..+.|.-+.++
T Consensus 179 ~aDT~~~~i~r~~~d 193 (307)
T COG3386 179 VADTPANRIHRYDLD 193 (307)
T ss_pred EEeCCCCeEEEEecC
Confidence 444 34566555555
No 418
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.27 E-value=21 Score=35.02 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=49.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC----CCC---c-e-------------eeeccccc-CcccceEEEEEcCCC
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDT----ETG---K-L-------------LKESDKET-GHKKTITSLAKAADG 145 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~----~~~---~-~-------------~~~~~~~~-~h~~~v~~v~~s~~~ 145 (268)
.-.|++++...+|+.|++ |.|| .+|.+ ..+ + + +..+.... ++..+|..+++...-
T Consensus 178 g~~V~~I~~t~nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CceEEEEEeccCCcEEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 345778887777887765 5666 44543 221 1 0 00111112 567799999998888
Q ss_pred CEEEEeeCCCcEEEEECCC
Q 024407 146 SHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 146 ~~l~s~~~d~~i~iwd~~~ 164 (268)
+.+.+-+.-++|..||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8899999999999999875
No 419
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.10 E-value=21 Score=28.17 Aligned_cols=91 Identities=11% Similarity=0.173 Sum_probs=57.3
Q ss_pred EEEEEcCCCCEE-EEEeCCCcEEEEE--CCCCc-----eeeecccccCccc-ceEEEEEcCCCCEEEEeeCCCcEEEEEC
Q 024407 92 NRAVWGPLNRTI-ISAGEDAIVRIWD--TETGK-----LLKESDKETGHKK-TITSLAKAADGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 92 ~~~~~~~~~~~l-~s~~~dg~i~iwd--~~~~~-----~~~~~~~~~~h~~-~v~~v~~s~~~~~l~s~~~d~~i~iwd~ 162 (268)
+.+.|+.+.+.+ ++-+.+-.|.-|| ..+|. .+..+........ .--.+++..+|...+++-..++|...|+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 356788777755 4557778887787 44443 2222221111111 1123445668888888888999999999
Q ss_pred CCcceeeeeecCC-ceeEEEE
Q 024407 163 RTLELIKTYVTER-PVNAVTM 182 (268)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~~ 182 (268)
.+++.+..+..+. ++.+++|
T Consensus 241 ~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEe
Confidence 9999988876543 4455554
No 420
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=82.88 E-value=25 Score=28.94 Aligned_cols=136 Identities=17% Similarity=0.268 Sum_probs=62.9
Q ss_pred EeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc--ceeeeeecCCceeEEEEc
Q 024407 106 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYVTERPVNAVTMS 183 (268)
Q Consensus 106 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~ 183 (268)
++..|.|.. ..+.++....+. ..-...+..+.-++||.++++++.-....-||.-.. +.... .....+..+.+.
T Consensus 120 ~~~~G~iy~-T~DgG~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-~~~~riq~~gf~ 195 (302)
T PF14870_consen 120 AGDRGAIYR-TTDGGKTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-NSSRRIQSMGFS 195 (302)
T ss_dssp EETT--EEE-ESSTTSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-
T ss_pred EcCCCcEEE-eCCCCCCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc-Cccceehhceec
Confidence 444554322 233344443322 223466888888899998888877777788886532 22221 245678999999
Q ss_pred cCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEE
Q 024407 184 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256 (268)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i 256 (268)
|++. +.+.. .++.+...+... ....|.+.. .........+..++|.++++.+|+|+. |++.+
T Consensus 196 ~~~~-lw~~~--~Gg~~~~s~~~~---~~~~w~~~~----~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~ 257 (302)
T PF14870_consen 196 PDGN-LWMLA--RGGQIQFSDDPD---DGETWSEPI----IPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV 257 (302)
T ss_dssp TTS--EEEEE--TTTEEEEEE-TT---EEEEE---B-----TTSS--S-EEEEEESSSS-EEEEEST-T-EEE
T ss_pred CCCC-EEEEe--CCcEEEEccCCC---Ccccccccc----CCcccCceeeEEEEecCCCCEEEEeCC-ccEEE
Confidence 9854 43333 223344433110 112232211 111112235889999999998887774 55544
No 421
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.25 E-value=3.4 Score=37.09 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=26.6
Q ss_pred eEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceeee
Q 024407 91 INRAVWGP----LNRTIISAGEDAIVRIWDTETGKLLKE 125 (268)
Q Consensus 91 v~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~ 125 (268)
......++ +..++++.+.|+.+|+||+.+++.+..
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 44455555 567899999999999999999988543
No 422
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.30 E-value=26 Score=31.04 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=27.3
Q ss_pred CeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceee
Q 024407 90 RINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLK 124 (268)
Q Consensus 90 ~v~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~ 124 (268)
.+..+.|+|++ .+++.-+.|+.||+||+...+.+.
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 45667899976 578888999999999997655443
No 423
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=80.47 E-value=4.5 Score=37.90 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=41.6
Q ss_pred eEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEE-----------EcCCCCEEEEeeCCCc
Q 024407 91 INRAVWGP---LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA-----------KAADGSHFLTGSLDKS 156 (268)
Q Consensus 91 v~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~-----------~s~~~~~l~s~~~d~~ 156 (268)
+..+.|.| +.-++-.+-.++.|++....+... .+. -+|...++.++ .||||..++.++.||.
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~--rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLF--RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH--HHH--HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 34444544 344555555777888765543211 111 13544443332 7899999999999999
Q ss_pred EEEEECC
Q 024407 157 AKLWDAR 163 (268)
Q Consensus 157 i~iwd~~ 163 (268)
++.|-+.
T Consensus 259 v~f~Qiy 265 (1283)
T KOG1916|consen 259 VGFYQIY 265 (1283)
T ss_pred cceeeee
Confidence 9988653
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=79.38 E-value=38 Score=28.72 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=48.4
Q ss_pred CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Ccee--eecccccCcccceEEEEEcCCCCEEEEeeC
Q 024407 90 RINRAVWGPLNRTIISAG-----------EDA-IVRIWDTET--GKLL--KESDKETGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~--~~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
....++|.++|+.+++-. ..+ .|.+++-.+ ++.- ..+. ..-.....+++.+++ .+++ ..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa---~~l~~p~Gi~~~~~G-lyV~-~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA---EELSMVTGLAVAVGG-VYVA-TP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee---cCCCCccceeEecCC-EEEe-CC
Confidence 345678999998777643 223 677776543 3221 1111 112245678888888 4443 44
Q ss_pred CCcEEEEECCCc-------cee-eeeec-----CCceeEEEEccCCCeEE
Q 024407 154 DKSAKLWDARTL-------ELI-KTYVT-----ERPVNAVTMSPLLDHVV 190 (268)
Q Consensus 154 d~~i~iwd~~~~-------~~~-~~~~~-----~~~~~~~~~~~~~~~~~ 190 (268)
..-.++.|.... +.+ ..+.. ......+.+.|++...+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv 139 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYF 139 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEE
Confidence 332334354321 111 11211 22366788888765433
No 425
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.20 E-value=20 Score=25.47 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=47.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCce--------eeecccccCcccceEEEEEcC-----CCCEEEEeeCCCcEEEEE
Q 024407 95 VWGPLNRTIISAGEDAIVRIWDTETGKL--------LKESDKETGHKKTITSLAKAA-----DGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 95 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~h~~~v~~v~~s~-----~~~~l~s~~~d~~i~iwd 161 (268)
.|.....-|++++.-|.|.|.+.+.... ++.+. -...|++++--+ +...|+.++. ..|..||
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN----in~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN----INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE----CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 3444445778888899999998775422 11121 234566665332 2334555554 6799999
Q ss_pred CCCcceeeeeecCCceeEEEE
Q 024407 162 ARTLELIKTYVTERPVNAVTM 182 (268)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~ 182 (268)
..+...+.--..+..++++.+
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~ 100 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVI 100 (136)
T ss_pred cccCchhhhhhCccceeEEEE
Confidence 987544332233444555554
No 426
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.51 E-value=19 Score=28.02 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=23.5
Q ss_pred cCCCCEEEEeeCCCcEEEEECCCcceee
Q 024407 142 AADGSHFLTGSLDKSAKLWDARTLELIK 169 (268)
Q Consensus 142 s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 169 (268)
...+++|++.+.+|.+.+||+++.+++.
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence 3568899999999999999999876543
No 427
>PHA02790 Kelch-like protein; Provisional
Probab=77.64 E-value=50 Score=29.20 Aligned_cols=66 Identities=8% Similarity=0.097 Sum_probs=35.2
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC---cEEEEECCCcce
Q 024407 99 LNRTIISAGED--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLEL 167 (268)
Q Consensus 99 ~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~---~i~iwd~~~~~~ 167 (268)
++...+.||.+ ..+..||..+++-.. ........... ++ ..-++...+.|+.++ ++..||+++.+-
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 45555677754 458889887654322 21111111111 11 223677777777653 467889887543
No 428
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.24 E-value=38 Score=27.65 Aligned_cols=157 Identities=12% Similarity=0.178 Sum_probs=85.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC--CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCC----C
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA----D 75 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 75 (268)
|+|+.++|++-.....--+|=-..|..+.++... .....+.+.-+++++++- .. ...+....+..... .
T Consensus 93 ynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~d-ER----~~~l~~~~vd~~t~~~~~~ 167 (316)
T COG3204 93 YNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVD-ER----DRALYLFTVDADTTVISAK 167 (316)
T ss_pred eCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEe-hh----cceEEEEEEcCCccEEecc
Confidence 7899999998888888888877788888877532 233455555555554432 11 11111111110000 0
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcc-------cceEEEEEcCCCCEE
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-------KTITSLAKAADGSHF 148 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~v~~s~~~~~l 148 (268)
....++......+.....++|+|..+.|..+-..+-+.||........-.......+. ..|.++.|.+..+.|
T Consensus 168 ~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~L 247 (316)
T COG3204 168 VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSL 247 (316)
T ss_pred ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcE
Confidence 0001111111225677889999999999999888889988776432111111001111 235556677555555
Q ss_pred EEee-CCCcEEEEECC
Q 024407 149 LTGS-LDKSAKLWDAR 163 (268)
Q Consensus 149 ~s~~-~d~~i~iwd~~ 163 (268)
++-| .++.+.-.|..
T Consensus 248 LVLS~ESr~l~Evd~~ 263 (316)
T COG3204 248 LVLSDESRRLLEVDLS 263 (316)
T ss_pred EEEecCCceEEEEecC
Confidence 4444 45555566654
No 429
>PHA03098 kelch-like protein; Provisional
Probab=76.74 E-value=56 Score=29.25 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=33.6
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC--------cEEEEECCC
Q 024407 99 LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--------SAKLWDART 164 (268)
Q Consensus 99 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~--------~i~iwd~~~ 164 (268)
+++..+.||.+ +.+..||+.+++-.. ........... ++ ...++..++.|+.+. .+..||+.+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 45555666632 458899988764322 11111111111 11 223556666665432 378899887
Q ss_pred cce
Q 024407 165 LEL 167 (268)
Q Consensus 165 ~~~ 167 (268)
.+.
T Consensus 466 ~~W 468 (534)
T PHA03098 466 NKW 468 (534)
T ss_pred Cce
Confidence 653
No 430
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.45 E-value=44 Score=32.68 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=24.8
Q ss_pred cceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 231 GPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 231 ~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
..++|++|+|.|+.++.|-+.|++.=|.-
T Consensus 199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred cceeeEEeccccceeeEecCCCeEEEeec
Confidence 46899999999999999999999865443
No 431
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.92 E-value=26 Score=24.95 Aligned_cols=45 Identities=4% Similarity=-0.031 Sum_probs=30.1
Q ss_pred EEcCCCCEEEEeeCCCcEEEEECCCc--------ceeeeeecCCceeEEEEcc
Q 024407 140 AKAADGSHFLTGSLDKSAKLWDARTL--------ELIKTYVTERPVNAVTMSP 184 (268)
Q Consensus 140 ~~s~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~ 184 (268)
.|......|++++.-+.|.++++... ..+..+.....+.+++-.+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~ 57 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGR 57 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEe
Confidence 45555567888888899999998743 2344555566677766444
No 432
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.77 E-value=38 Score=26.82 Aligned_cols=46 Identities=22% Similarity=0.152 Sum_probs=36.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC
Q 024407 95 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143 (268)
Q Consensus 95 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 143 (268)
+..-+|...+++-.-++|...|+.+|+.+..++. -..++++++|--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEecC
Confidence 4455778888888999999999999999887764 256788888863
No 433
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=75.08 E-value=90 Score=30.86 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=26.1
Q ss_pred ceEEEEECCCC--CeEEeeeCCCeEEEEeeCCCc
Q 024407 232 PINALAFNPDG--KSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 232 ~v~~~~~sp~~--~~lasgs~Dg~i~i~~~~~~~ 263 (268)
.|.++.|--|| -+++.+.+|+.|+++.|+||.
T Consensus 1183 ~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1183 NVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred hceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCC
Confidence 47778776555 458899999999999999984
No 434
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=74.39 E-value=33 Score=25.50 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=24.4
Q ss_pred ceEEEEEcCCC------CEEEEeeCCCcEEEEECCC
Q 024407 135 TITSLAKAADG------SHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 135 ~v~~v~~s~~~------~~l~s~~~d~~i~iwd~~~ 164 (268)
.+..++|||-| .+|++.+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68889999854 3688889999999998664
No 435
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=74.05 E-value=54 Score=27.79 Aligned_cols=104 Identities=12% Similarity=0.101 Sum_probs=52.7
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----c--eee-ecccc-cCcccceEEEEEcCCCCEEEEeeC
Q 024407 83 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-----K--LLK-ESDKE-TGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~--~~~-~~~~~-~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
.+...-...+.+.+.+++ .++ +......++.|.... + .+. .+... ..+......+++.|||.+.++.+.
T Consensus 66 vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 66 VFAEELSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred EeecCCCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 333333445778888888 444 444443344454321 1 111 11111 012344678899999987776552
Q ss_pred C-------------------CcEEEEECCCcceeeeeec-CCceeEEEEccCCCeE
Q 024407 154 D-------------------KSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHV 189 (268)
Q Consensus 154 d-------------------~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 189 (268)
. +.|.-+|+.+.+. ..+.. -+....++++|.+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 144 TLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred CCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEE
Confidence 1 3455556654432 22221 2335678888865543
No 436
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=73.82 E-value=4.3 Score=24.32 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=16.7
Q ss_pred CCeEEeeeCCCeEEEEeeCCC
Q 024407 242 GKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 242 ~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+.||.-+.|++|+||+++++
T Consensus 29 ~N~Fav~~e~~~iKIfkyd~~ 49 (63)
T PF14157_consen 29 HNHFAVVDEDGQIKIFKYDED 49 (63)
T ss_dssp TTEEEEE-ETTEEEEEEEETT
T ss_pred CCEEEEEecCCeEEEEEeCCC
Confidence 356776788999999999987
No 437
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=73.46 E-value=9.2 Score=18.67 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=18.3
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEE
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLH 257 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~ 257 (268)
..++.+++|+.+++=+....|++|
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 467777888888887777777764
No 438
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=73.39 E-value=9.3 Score=18.73 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.2
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEE
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLH 257 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~ 257 (268)
.|.+++.++ .+++.+..-+.+|+|
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEec
Confidence 477888776 488888888999997
No 439
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.49 E-value=67 Score=28.16 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=58.8
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeec-----CCceeEEEEccCCCeEEEeecCCCceEEEeccC
Q 024407 132 HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 206 (268)
Q Consensus 132 h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 206 (268)
-+++|.++.||+|...++.--.|.+|-+++....+....+.+ ...+....|+.+-+ +++....+ ..+...+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~-- 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVL-- 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEc--
Confidence 356899999999999999999999999998754332222211 12344555655422 22221111 1111111
Q ss_pred CCeeeeEeeehhhhhhhccccccccceEEEEECCCCCe
Q 024407 207 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 244 (268)
.....++..+.|...|+--.|.++-+.
T Consensus 141 -----------pekrslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 141 -----------PEKRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred -----------hhhhhhhhhhhcccCccEEEEccccce
Confidence 123334555678888999999998776
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=71.23 E-value=90 Score=29.15 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=61.2
Q ss_pred ceEEEEEc--CCCCEEEEeeCCCcEEEEECCCc--------------------ceeeeeecCCceeEEEEc--cCCCeEE
Q 024407 135 TITSLAKA--ADGSHFLTGSLDKSAKLWDARTL--------------------ELIKTYVTERPVNAVTMS--PLLDHVV 190 (268)
Q Consensus 135 ~v~~v~~s--~~~~~l~s~~~d~~i~iwd~~~~--------------------~~~~~~~~~~~~~~~~~~--~~~~~~~ 190 (268)
.|+.+.+. ...+.|+.|..||.|.+|...+- ++...+..+..+..++++ .....++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 35555444 35568999999999999965310 011112234456777776 4333333
Q ss_pred EeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC---C---eEEeeeCCCeEEEEee
Q 024407 191 LGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG---K---SFSSGGEDGYVRLHHF 259 (268)
Q Consensus 191 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~---~---~lasgs~Dg~i~i~~~ 259 (268)
++.......+........+ +.. ..-..|...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r----~~~-------~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDER----FYH-------VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccc----ccc-------ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3333322222222211000 000 0001244578899987643 2 6888999999988776
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=70.75 E-value=48 Score=25.75 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=32.1
Q ss_pred CEEEEeeCCCcEEEEECCC--cceeeeeecCCceeEEEEccCCCeEEEe
Q 024407 146 SHFLTGSLDKSAKLWDART--LELIKTYVTERPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 146 ~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (268)
..|..+.....|.+|++.. .+.+..+..-..+..+.++..|+++++-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence 3444446667899999883 3344455555677888899888887764
No 442
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=70.27 E-value=23 Score=27.47 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=37.8
Q ss_pred CEEEEEeCCCcEEEEECCCC--ceeeecccccCcccceEEEEEcCCCCEEEEeeC------CCcEEEE
Q 024407 101 RTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLW 160 (268)
Q Consensus 101 ~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~------d~~i~iw 160 (268)
+.|+.+...+.|.+|++.+. +....+. .-+.|..+.++..|++++|-=. ...+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 44544466677999999832 3334443 3478999999999999998622 2266665
No 443
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=69.74 E-value=74 Score=27.53 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=25.7
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.|.+++..+..+.+.+-..+|.|++|++..+
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 3899999988899999999999999999754
No 444
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.64 E-value=61 Score=26.53 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=39.2
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC
Q 024407 94 AVWGPLNRTIISAGE-----DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 94 ~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
-.|||||++|+..=. -|.|=+||.+.+- ..+...+.|.-.-..+.+.+||..++.+..
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~f--qrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGF--QRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEeccccc--ceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 379999999986633 3778899998531 222222345555567788899998887743
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=69.47 E-value=1e+02 Score=29.17 Aligned_cols=73 Identities=18% Similarity=0.088 Sum_probs=48.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeecccccCccc-----ceEEEEEc----------------CCCCEEEEeeCCCcEE
Q 024407 100 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-----TITSLAKA----------------ADGSHFLTGSLDKSAK 158 (268)
Q Consensus 100 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----~v~~v~~s----------------~~~~~l~s~~~d~~i~ 158 (268)
+..++.++.++.|.-.|.++|+.+.+......... ....+++. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56777788899999999999988765543211110 01112221 1234788888999999
Q ss_pred EEECCCcceeeeee
Q 024407 159 LWDARTLELIKTYV 172 (268)
Q Consensus 159 iwd~~~~~~~~~~~ 172 (268)
-.|.++++....+.
T Consensus 274 ALDA~TGk~~W~fg 287 (764)
T TIGR03074 274 ALDADTGKLCEDFG 287 (764)
T ss_pred EEECCCCCEEEEec
Confidence 99999998876543
No 446
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=68.52 E-value=61 Score=26.11 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=62.1
Q ss_pred EEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeee
Q 024407 93 RAVWGPLNRTIISAGEDA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170 (268)
Q Consensus 93 ~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 170 (268)
.+.|..+|..+-+.|.-| .|+.+|+.+++......... +.---.++.. ++....-.=.++...+||..+.+.+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--cccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 456666777777887666 69999999998775544321 1111222222 222333344578899999999988888
Q ss_pred eecCCceeEEEEccCCCeEEEeecCCCceEEEeccC
Q 024407 171 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 206 (268)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 206 (268)
+.-+..-..++ .++..++++-|++ .+...|..
T Consensus 126 ~~y~~EGWGLt--~dg~~Li~SDGS~--~L~~~dP~ 157 (264)
T PF05096_consen 126 FPYPGEGWGLT--SDGKRLIMSDGSS--RLYFLDPE 157 (264)
T ss_dssp EE-SSS--EEE--ECSSCEEEE-SSS--EEEEE-TT
T ss_pred EecCCcceEEE--cCCCEEEEECCcc--ceEEECCc
Confidence 76554444444 4456666665543 45555544
No 447
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=66.80 E-value=75 Score=26.52 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eeecc-cccCcccceEEEEEcCC
Q 024407 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKL---LKESD-KETGHKKTITSLAKAAD 144 (268)
Q Consensus 91 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~-~~~~h~~~v~~v~~s~~ 144 (268)
.+.+.|.|+|+.+++ -..|.|++++ ..+.. +..+. ...........++++|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 467899999887665 5699999999 34332 22221 11233457889999985
No 448
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=65.36 E-value=20 Score=33.30 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=42.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 91 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
++++.-+|.+..++.+.+||+|++|+.-.++..+ +. .-..|-..+.|... -|+++..|..+.-|.-.
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-i~---~~~~p~~nlv~tnh--gl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-IC---EEAKPKENLVFTNH--GLVTATSDRRALAWKED 83 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccchhh-hh---hhcCCccceeeecc--ceEEEeccchhheeecc
Confidence 4555667888999999999999999986544311 11 01223334444433 36777888888888643
No 449
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=64.32 E-value=55 Score=30.90 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=30.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeee
Q 024407 133 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 170 (268)
Q Consensus 133 ~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 170 (268)
...|.++....-+..++.+..||+|.++|..+.+.+..
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~ 296 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNE 296 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcc
Confidence 35688888777888999999999999999888765543
No 450
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=63.81 E-value=15 Score=19.51 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=15.3
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 024407 100 NRTIISAGEDAIVRIWDTET 119 (268)
Q Consensus 100 ~~~l~s~~~dg~i~iwd~~~ 119 (268)
+..++.++.||.+..+|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 56788899999999998764
No 451
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=62.94 E-value=1.2e+02 Score=27.38 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=37.6
Q ss_pred cEEEEECCCCceeeecccccCcc-------cceEEEEEcCCCC---EEEEeeCCCcEEEEECCCccee
Q 024407 111 IVRIWDTETGKLLKESDKETGHK-------KTITSLAKAADGS---HFLTGSLDKSAKLWDARTLELI 168 (268)
Q Consensus 111 ~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~v~~s~~~~---~l~s~~~d~~i~iwd~~~~~~~ 168 (268)
+|.-.|++||+....++. ..|. .+..=+....+|. .++.+..+|.+.+.|.++++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~-~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQT-TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeC-CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 567778999987654432 1121 1112223334665 6789999999999999999875
No 452
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=62.24 E-value=1.1e+02 Score=26.92 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeee--------ecCCceeEEEEccCC------CeEEEeecC-------
Q 024407 137 TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY--------VTERPVNAVTMSPLL------DHVVLGGGQ------- 195 (268)
Q Consensus 137 ~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~------~~~~~~~~~------- 195 (268)
+.++|.||+.+|++--..|.|++++..+....... ..+.-...++++|+- ..+.++-..
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~ 112 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL 112 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Q ss_pred -CCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCC
Q 024407 196 -DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG 252 (268)
Q Consensus 196 -~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg 252 (268)
....+..+..........-........-..- .|... .|+|.|||++.++.+..+
T Consensus 113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~-~H~Gg--rI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN-DHNGG--RLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred cCCcEEEEEEecCCCCccccceEEEecCCCCC-CcCCc--eEEECCCCcEEEEECCCC
No 453
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=61.71 E-value=1e+02 Score=26.39 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCCCCEEEEe-ecC----CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEE-EEcCCCcc-----cccceEeeeee
Q 024407 2 FQANSMTLITG-SAD----QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV-ITTDPFME-----LNSAIHVKRIA 70 (268)
Q Consensus 2 fs~d~~~l~s~-s~D----~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~ 70 (268)
+|||+++||-+ +.. .++++.|+++++.+...-.......+.|.+++..+. ...+.... ....+..+.+.
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g 210 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG 210 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence 68999987633 333 459999999997654321111222378888755443 33332211 02222222221
Q ss_pred eCCCCCCCceEEEEecCCCC--eEEEEEcCCCCEEEEE-e--CC-CcEEEEECCCC
Q 024407 71 RDPADQGGESVLILKGPQGR--INRAVWGPLNRTIISA-G--ED-AIVRIWDTETG 120 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~-~--~d-g~i~iwd~~~~ 120 (268)
. ...+...++.+.... ...+..++++++|+.. + .+ ..+.+.|+..+
T Consensus 211 t----~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 211 T----PQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp S-----GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred C----ChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 1 111223445554443 5678899999987543 2 22 34788888764
No 454
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=60.82 E-value=2.7 Score=19.72 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=6.1
Q ss_pred CCCCCCCE
Q 024407 1 MFQANSMT 8 (268)
Q Consensus 1 ~fs~d~~~ 8 (268)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 48888875
No 455
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=60.24 E-value=1.7e+02 Score=28.40 Aligned_cols=76 Identities=13% Similarity=-0.040 Sum_probs=47.1
Q ss_pred CCCeEEEEEcCCCC------EEEEEeCCCcEEEEEC-CCCceee-ecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 88 QGRINRAVWGPLNR------TIISAGEDAIVRIWDT-ETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 88 ~~~v~~~~~~~~~~------~l~s~~~dg~i~iwd~-~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
..+|.|++++|.|. .++.|.++..+.+--. .+...++ .....+.-+..+.-..+..|..+|.++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 46799999998632 6788888877665432 2222221 11111122334555566677889999999999986
Q ss_pred EECC
Q 024407 160 WDAR 163 (268)
Q Consensus 160 wd~~ 163 (268)
|-+.
T Consensus 610 fv~d 613 (1096)
T KOG1897|consen 610 FVLD 613 (1096)
T ss_pred EEEE
Confidence 6554
No 456
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=58.66 E-value=31 Score=32.82 Aligned_cols=23 Identities=4% Similarity=0.196 Sum_probs=21.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecC
Q 024407 2 FQANSMTLITGSADQTAKLWNVE 24 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~ 24 (268)
.||||+.|++++.||.+++|.+.
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeee
Confidence 48999999999999999999864
No 457
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=58.11 E-value=27 Score=22.64 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=22.4
Q ss_pred eEEEEECCCCCeEEe-eeCCCeEEEEeeCC
Q 024407 233 INALAFNPDGKSFSS-GGEDGYVRLHHFDP 261 (268)
Q Consensus 233 v~~~~~sp~~~~las-gs~Dg~i~i~~~~~ 261 (268)
-+-|.++|++++|.. ....+.|++++.+.
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 456899999988554 45678999998764
No 458
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.01 E-value=88 Score=31.14 Aligned_cols=34 Identities=21% Similarity=0.567 Sum_probs=23.2
Q ss_pred cceEEEEECCCCCeEEeeeCCCeE-E-EEeeCCCcce
Q 024407 231 GPINALAFNPDGKSFSSGGEDGYV-R-LHHFDPDYFN 265 (268)
Q Consensus 231 ~~v~~~~~sp~~~~lasgs~Dg~i-~-i~~~~~~~~~ 265 (268)
..|+|+....+|+.|.+|- ||.+ . +|+....||.
T Consensus 179 ~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~ 214 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFG 214 (1311)
T ss_pred ceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhh
Confidence 4689999999999988655 5544 2 2555555663
No 459
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=57.97 E-value=1.2e+02 Score=25.98 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=73.5
Q ss_pred cEEEeecCCCcEEEEEecCCCceeeeeecCCe-EEEEEcCCCccc-ccceEeeeeeeCCCCCCCceEEEEecCC--CCeE
Q 024407 17 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMEL-NSAIHVKRIARDPADQGGESVLILKGPQ--GRIN 92 (268)
Q Consensus 17 tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~ 92 (268)
.|..-|+++|+....++...-+.-+.++|.+. ++..+..+-... +. ++|-+... +.....+..+. ..+.
T Consensus 169 ~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~--RiW~i~~d-----g~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQ--RIWTINTD-----GSNVKKVHRRMEGESVG 241 (386)
T ss_dssp EEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS---SEEEEETT-----S---EESS---TTEEEE
T ss_pred eEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceece--EEEEEEcC-----CCcceeeecCCCCcccc
Confidence 44455667777666666666677788888554 444444332211 11 34544322 12222333332 2345
Q ss_pred EEEEcCCCCEEEEE-----eCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC------------
Q 024407 93 RAVWGPLNRTIISA-----GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------------ 155 (268)
Q Consensus 93 ~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~------------ 155 (268)
.--|.|+|..|.-- +.+..|.-+|+.+++... +.. ..+-..+-.++|+..++-=+.|.
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-LME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-EEE----E-SEEEEEE-TTSSEEEEEE---------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE-EEe----CCceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 56789999866432 235567788888875432 111 11222344567888776544432
Q ss_pred ----cEEEEECCCcceeeeeecC-----------CceeEEEEccCCCeEEEeecC
Q 024407 156 ----SAKLWDARTLELIKTYVTE-----------RPVNAVTMSPLLDHVVLGGGQ 195 (268)
Q Consensus 156 ----~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 195 (268)
.|.++++..++......+. ..-.-..|+|+++.++..+..
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC
Confidence 4566777665432211110 112345788888887776543
No 460
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=56.69 E-value=1e+02 Score=24.60 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=27.8
Q ss_pred EEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-C--CcEEEEECCC
Q 024407 113 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-D--KSAKLWDART 164 (268)
Q Consensus 113 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d--~~i~iwd~~~ 164 (268)
.+||+.+++... +.. ....--.+-.+.+||..+.+++. | ..+++++.-.
T Consensus 49 ~~yD~~tn~~rp-l~v--~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~ 100 (243)
T PF07250_consen 49 VEYDPNTNTFRP-LTV--QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT 100 (243)
T ss_pred EEEecCCCcEEe-ccC--CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCC
Confidence 378888875432 111 01111112246689999988865 2 3588888754
No 461
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.24 E-value=77 Score=31.14 Aligned_cols=62 Identities=6% Similarity=0.179 Sum_probs=42.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCc-ccceEEEEEcCCCCEEEE
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHFLT 150 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~~~l~s 150 (268)
....++++|+|-|++++.|-..|++.-|...- +....+..-... ...|.+|.|-..-..+++
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 34578999999999999999999999886542 222222211111 467899988876666554
No 462
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=54.80 E-value=2e+02 Score=27.43 Aligned_cols=139 Identities=16% Similarity=0.144 Sum_probs=72.8
Q ss_pred CCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEe
Q 024407 6 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 85 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (268)
+..|+.++.++.|.-.|.++|+.+++++...+......+ ..+ ..+.++.... .......+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-------~~c-------RGvay~~~p~-----~~~~~~~~- 253 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-------QTC-------RGVSYYDAPA-----AAAGPAAP- 253 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-------ccc-------cceEEecCCc-----cccccccc-
Confidence 457888999999999999999999988754332110000 000 0001110000 00000000
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccccc--------C-cccceEEEEEcC--CCCEEEEeeC-
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--------G-HKKTITSLAKAA--DGSHFLTGSL- 153 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~-h~~~v~~v~~s~--~~~~l~s~~~- 153 (268)
.. -...+++++.++.|+.+.-.|.++|+.+..+.... + .+..-..+.-+| .+..++.++.
T Consensus 254 -~~-------p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v 325 (764)
T TIGR03074 254 -AA-------PADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRV 325 (764)
T ss_pred -cc-------ccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecc
Confidence 00 01234678888899999999999998875442110 0 000000001011 1234555532
Q ss_pred ---------CCcEEEEECCCcceeeeee
Q 024407 154 ---------DKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 154 ---------d~~i~iwd~~~~~~~~~~~ 172 (268)
+|.|+-+|.++++.+-.+.
T Consensus 326 ~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 326 ADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred cccccccCCCcEEEEEECCCCcEeeEEe
Confidence 6889999999998776653
No 463
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=54.35 E-value=2.2e+02 Score=27.93 Aligned_cols=113 Identities=14% Similarity=0.227 Sum_probs=57.7
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCC---ceeEEEEccCCCeEEEeecCCCceEEEeccCCCe
Q 024407 133 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 209 (268)
Q Consensus 133 ~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 209 (268)
+.+|.++ .|-..+++++ ....+++||+.+.+.+++..... .+..+++. ...++++-..++.....|+.....
T Consensus 935 ~~~v~Ai--~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 935 PGPVGAI--CPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred CccceEE--eccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCe
Confidence 3455444 4544455444 34789999998776655543222 23333332 345555555554444444433222
Q ss_pred eeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 210 FEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+. .+.+... ...|+++.+= |..-+|.|..=|.+.+-+..++
T Consensus 1010 l~-~fadD~~----------pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1010 LI-VFADDPV----------PRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred EE-EEeCCCc----------cceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence 22 2222211 1246666553 3345776666677777776655
No 464
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=54.15 E-value=88 Score=23.20 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=25.3
Q ss_pred cceEEEEECCCC------CeEEeeeCCCeEEEEeeCC
Q 024407 231 GPINALAFNPDG------KSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 231 ~~v~~~~~sp~~------~~lasgs~Dg~i~i~~~~~ 261 (268)
..+.+++|||-| ..||.-..++.+.||+-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 368899999944 3589999999999998664
No 465
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=53.82 E-value=45 Score=21.80 Aligned_cols=49 Identities=14% Similarity=0.005 Sum_probs=28.1
Q ss_pred EEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEe-eCCCcE
Q 024407 105 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSA 157 (268)
Q Consensus 105 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-~~d~~i 157 (268)
.+..+|.+.-||+.+++...-+.. -...+.|++++|++.++.+ +.-..|
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~----L~fpNGVals~d~~~vlv~Et~~~Ri 81 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDG----LYFPNGVALSPDESFVLVAETGRYRI 81 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEE----ESSEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhC----CCccCeEEEcCCCCEEEEEeccCceE
Confidence 345667888899998764322221 1356789999999976654 333333
No 466
>PRK13684 Ycf48-like protein; Provisional
Probab=53.74 E-value=1.3e+02 Score=25.12 Aligned_cols=151 Identities=13% Similarity=0.130 Sum_probs=74.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 167 (268)
+.+.++.+.|++.+++ .+..|.+..- .+. ++....+.. .-...++++.+.+++..++. +..|.+++=....++.
T Consensus 173 g~~~~i~~~~~g~~v~-~g~~G~i~~s-~~~gg~tW~~~~~--~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 173 GVVRNLRRSPDGKYVA-VSSRGNFYST-WEPGQTAWTPHQR--NSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred ceEEEEEECCCCeEEE-EeCCceEEEE-cCCCCCeEEEeeC--CCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 4567888888876554 4556655431 122 233332221 23457888899888876655 4557664322333332
Q ss_pred eeeeec-----CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 168 IKTYVT-----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 168 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
-..... ...+..+.+.+.+. +++++. ++..+...|... .|..... ...-+...+.+.|..++
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~-~G~v~~S~d~G~------tW~~~~~-----~~~~~~~~~~~~~~~~~ 314 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGG-NGTLLVSKDGGK------TWEKDPV-----GEEVPSNFYKIVFLDPE 314 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcC-CCeEEEeCCCCC------CCeECCc-----CCCCCcceEEEEEeCCC
Confidence 221111 12355667777543 444433 333333322110 1111000 01112357788887777
Q ss_pred CeEEeeeCCCeEEEEe
Q 024407 243 KSFSSGGEDGYVRLHH 258 (268)
Q Consensus 243 ~~lasgs~Dg~i~i~~ 258 (268)
+.++.| ..|.|--++
T Consensus 315 ~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 315 KGFVLG-QRGVLLRYV 329 (334)
T ss_pred ceEEEC-CCceEEEec
Confidence 777754 467775543
No 467
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=53.35 E-value=41 Score=31.97 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
.|.|+.-+.+|+.+.+|-.| ..||++
T Consensus 183 nV~civs~e~GrIFf~g~~d--~nvyEl 208 (1263)
T COG5308 183 NVRCIVSEEDGRIFFGGEND--PNVYEL 208 (1263)
T ss_pred eeEEEEeccCCcEEEecCCC--CCeEEE
Confidence 58899888899999998888 555443
No 468
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=52.70 E-value=1.4e+02 Score=24.95 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=29.6
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeee
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA 44 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~ 44 (268)
|+++-++=+..|.+..+|.++|+.......++-++.+.|.
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~ 251 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA 251 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee
Confidence 6677777788888888887777766666666677777776
No 469
>PRK10115 protease 2; Provisional
Probab=52.36 E-value=2e+02 Score=26.89 Aligned_cols=101 Identities=17% Similarity=0.055 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC------cEEE
Q 024407 91 INRAVWGPLNRTIISA-----GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------SAKL 159 (268)
Q Consensus 91 v~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~------~i~i 159 (268)
+....++|+|++|+-+ +....|++.|+.+++.+........ ..++|++|+..|+-...+. .|..
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-----~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-----PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-----eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Q ss_pred EECCCc----ceeeeeecCCceeEEEEccCCCeEEEeecCC
Q 024407 160 WDARTL----ELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 196 (268)
Q Consensus 160 wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (268)
+++.+. +++..-..+........+.++..+++.....
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~ 244 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA 244 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC
No 470
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=50.62 E-value=51 Score=27.52 Aligned_cols=77 Identities=10% Similarity=0.112 Sum_probs=44.2
Q ss_pred eEEEEecCCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCceee-ecccccCcccceEEEEEcCCCCEEEEe
Q 024407 80 SVLILKGPQGRINRAVWGP-------LNRTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTG 151 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~ 151 (268)
++..+..| ..+..+.|.. .|.+|++.-..+.|....+..+..+. ..........++..+++.|||.++++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 44444444 4566666653 33456655556777777776443322 221123345578999999999998888
Q ss_pred eCCCcE
Q 024407 152 SLDKSA 157 (268)
Q Consensus 152 ~~d~~i 157 (268)
..+|.|
T Consensus 324 d~~G~i 329 (331)
T PF07995_consen 324 DSDGKI 329 (331)
T ss_dssp -TTTTE
T ss_pred CCCCeE
Confidence 888876
No 471
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=48.90 E-value=61 Score=25.80 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=38.8
Q ss_pred EEcCCCCEEEEEeC-C--CcEEEEECCC---CceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc-EEEEEC
Q 024407 95 VWGPLNRTIISAGE-D--AIVRIWDTET---GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDA 162 (268)
Q Consensus 95 ~~~~~~~~l~s~~~-d--g~i~iwd~~~---~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~-i~iwd~ 162 (268)
.+-|+|+.+.+||. + ..+|+++.-+ ..............-+.-.+...+||+.|+.++.+.. ..+|..
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCC
Confidence 46789999988874 2 4588888654 1111111111122334445556789999998887643 344443
No 472
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=47.99 E-value=66 Score=22.98 Aligned_cols=33 Identities=6% Similarity=0.155 Sum_probs=19.2
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCC
Q 024407 88 QGRINRAVWGPLNRTII-SAGEDAIVRIWDTETG 120 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~ 120 (268)
+..+.-.-|.+|.+.|+ +|=.|+.|+.|.+...
T Consensus 10 s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~ 43 (136)
T PF08954_consen 10 SSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDE 43 (136)
T ss_dssp -SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SS
T ss_pred CCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCC
Confidence 34556667788888765 5558899999998765
No 473
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=46.93 E-value=1.7e+02 Score=24.38 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=9.2
Q ss_pred CcEEEEECCCcce
Q 024407 155 KSAKLWDARTLEL 167 (268)
Q Consensus 155 ~~i~iwd~~~~~~ 167 (268)
..+..||+.+.+-
T Consensus 168 ~~v~~YDp~t~~W 180 (346)
T TIGR03547 168 KNVLSYDPSTNQW 180 (346)
T ss_pred ceEEEEECCCCce
Confidence 4578899887643
No 474
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=46.77 E-value=1.7e+02 Score=24.32 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=50.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC------CCCEEEEeeCCCcEEEEECCC
Q 024407 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA------DGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 91 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~------~~~~l~s~~~d~~i~iwd~~~ 164 (268)
|+...-.++...=+.|-.-|.|-+||+. ++.++.+... +.-..-+.|+..| .+..|+---.||+|..||+.+
T Consensus 203 VtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 203 VTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred EEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence 4444445555444556666889999885 5555544321 2223345566544 356677667899999999998
Q ss_pred cceeeeee
Q 024407 165 LELIKTYV 172 (268)
Q Consensus 165 ~~~~~~~~ 172 (268)
++.+..+.
T Consensus 281 G~~~g~L~ 288 (336)
T TIGR03118 281 GAQLGQLL 288 (336)
T ss_pred Cceeeeec
Confidence 87766553
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=45.64 E-value=61 Score=30.31 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=26.0
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEECCC
Q 024407 134 KTITSLAKAADGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 134 ~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~ 164 (268)
..++++.-+|.+..++.+..||+|++|+.-.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 4566777779999999999999999998654
No 476
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=43.83 E-value=2.3 Score=36.87 Aligned_cols=139 Identities=14% Similarity=0.229 Sum_probs=73.8
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|-|++..|+.+..+-.++.||-. +...-....+.....++|-. ++..++++ ...+...+|.+.++... .
T Consensus 42 w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlA-----ek~~piylwd~n~eytq----q 111 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLA-----EKTGPIYLWDVNSEYTQ----Q 111 (615)
T ss_pred EecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhh-----hcCCCeeechhhhhhHH----H
Confidence 45667778888888899988843 22222222122211222221 22222221 12233344444332110 0
Q ss_pred EEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 81 VLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 81 ~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
+ .+. .|+... +.|++.+..++.+-..|.+++|+..+.+.+.... .|...++++++.+.+ +.+.++.|..+
T Consensus 112 L-E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G---kh~RRgtq~av~lEd-~vil~dcd~~L 182 (615)
T KOG2247|consen 112 L-ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG---KHQRRGTQIAVTLED-YVILCDCDNTL 182 (615)
T ss_pred H-hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhc---ccccceeEEEecccc-eeeecCcHHHH
Confidence 0 011 122222 5688877888888899999999998765543322 288899999998876 44455555443
No 477
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=42.49 E-value=1.4e+02 Score=28.28 Aligned_cols=71 Identities=18% Similarity=0.133 Sum_probs=50.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeec----ccc--------cCc----ccceEEEEEcCCCCEEEEe
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES----DKE--------TGH----KKTITSLAKAADGSHFLTG 151 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~--------~~h----~~~v~~v~~s~~~~~l~s~ 151 (268)
.+.|.++.....+..++.+..||+|.++|-.+-+.+... ... .|- -.+...++|||.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 456778887778889999999999999998775433222 000 011 1134558899999999998
Q ss_pred eCCCcEE
Q 024407 152 SLDKSAK 158 (268)
Q Consensus 152 ~~d~~i~ 158 (268)
..++.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888866
No 478
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=42.47 E-value=1.2e+02 Score=21.58 Aligned_cols=65 Identities=20% Similarity=0.152 Sum_probs=44.1
Q ss_pred EEEEeCCCcEEEEECCCCceeeecccccCcccceE-----------EEEEcCCCCEEEEeeCCCcEEEEECCCcceee
Q 024407 103 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-----------SLAKAADGSHFLTGSLDKSAKLWDARTLELIK 169 (268)
Q Consensus 103 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-----------~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 169 (268)
.+....||.|.++|..+++.+..+... ...-+. ......+..+-++--.||.+.+-|..++..+.
T Consensus 44 ~f~d~~~G~v~V~~~~~G~~va~~~~g--~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~i~ 119 (135)
T TIGR03054 44 VFEDRPDGAVAVVETPDGRLVAILEPG--QNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWSIE 119 (135)
T ss_pred EEecCCCCeEEEEECCCCCEEEEecCC--CCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcEEE
Confidence 356678888899888888887665432 111110 01134567788888899999999999886543
No 479
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.19 E-value=2.6e+02 Score=24.80 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=57.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecc-cccCcccceEEEEEcCCCCEEEEeeCCCcEEEEEC--
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA-- 162 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~-- 162 (268)
...++|.++.|+||.+.++.-=.|++|.+++....+...... ........|....|+.. .-++..+..| +-+|-.
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 345699999999999999999999999999874332211111 11122334666777644 4454444434 444432
Q ss_pred --CCcceeeeeecCCceeEEEEccCCCeEEEeec
Q 024407 163 --RTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 194 (268)
Q Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (268)
|..+.+++. .-.++...|.+.-.-++++.+
T Consensus 142 ekrslRlVks~--~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 142 EKRSLRLVKSH--NLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhc--ccCccEEEEccccceEeeecc
Confidence 222222222 223445555554444444443
No 480
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.43 E-value=2e+02 Score=23.45 Aligned_cols=80 Identities=16% Similarity=0.288 Sum_probs=46.1
Q ss_pred CCCeEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeeeccc-c-cCcccceEEEEEc-CCCCEEE-Ee---eCC
Q 024407 88 QGRINRAVWGPLNRTIISAG------EDAIVRIWDTETGKLLKESDK-E-TGHKKTITSLAKA-ADGSHFL-TG---SLD 154 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~-~-~~h~~~v~~v~~s-~~~~~l~-s~---~~d 154 (268)
++.|+++.|..+.+.++.|. ....+..||+.+... ..+.. . ..-+.+|..+.+. .|...+. ++ ..+
T Consensus 36 ~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~ 114 (281)
T PF12768_consen 36 SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGS 114 (281)
T ss_pred eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEEEeeccCCceEEEeceecCCC
Confidence 45688888886666666663 456688999987643 22221 0 1235678777664 3444344 32 234
Q ss_pred CcEEEEECCCccee
Q 024407 155 KSAKLWDARTLELI 168 (268)
Q Consensus 155 ~~i~iwd~~~~~~~ 168 (268)
..|.-||-.....+
T Consensus 115 ~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 115 TFLMKYDGSSWSSI 128 (281)
T ss_pred ceEEEEcCCceEec
Confidence 46777876554433
No 481
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=39.87 E-value=1.9e+02 Score=22.95 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=11.0
Q ss_pred CCCCCCEEEEeecCC
Q 024407 2 FQANSMTLITGSADQ 16 (268)
Q Consensus 2 fs~d~~~l~s~s~D~ 16 (268)
++.||+.|+++..|-
T Consensus 144 ~~~dgk~LFsad~dE 158 (292)
T KOG3950|consen 144 NDVDGKLLFSADEDE 158 (292)
T ss_pred ecCCCcEEEEeccce
Confidence 456788888887774
No 482
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=39.68 E-value=2.9e+02 Score=24.93 Aligned_cols=138 Identities=19% Similarity=0.242 Sum_probs=70.6
Q ss_pred EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC-------CCEEEEeeCCCcEEEEECCCcc-eeee-----
Q 024407 104 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-------GSHFLTGSLDKSAKLWDARTLE-LIKT----- 170 (268)
Q Consensus 104 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-------~~~l~s~~~d~~i~iwd~~~~~-~~~~----- 170 (268)
..|+....++-.|++.|+.+-.... |..- -|.+.|+ ...-+.|-.+..|.-.|+|-.. -+..
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~---~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd 558 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDL---KDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD 558 (776)
T ss_pred ecCCCcccceeeecccceeeeEeec---CCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh
Confidence 4566677777778888887654331 3322 2344443 2345667777888888887432 1111
Q ss_pred eecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeC
Q 024407 171 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE 250 (268)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~ 250 (268)
+.......+..-.. .+++++++.. + +.++|++.-......+++--..|-.+..+.+|++++..+.
T Consensus 559 Y~tKn~Fss~~tTe-sGyIa~as~k--G------------DirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 559 YKTKNKFSSGMTTE-SGYIAAASRK--G------------DIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred cccccccccccccc-CceEEEecCC--C------------ceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 00111111111111 2334333221 1 3345554332222234444567888999999999776664
Q ss_pred CCeEEEEeeCCC
Q 024407 251 DGYVRLHHFDPD 262 (268)
Q Consensus 251 Dg~i~i~~~~~~ 262 (268)
.++.+-.++.+
T Consensus 624 -~yllL~d~~ik 634 (776)
T COG5167 624 -NYLLLTDVPIK 634 (776)
T ss_pred -ceEEEEecccc
Confidence 35655555544
No 483
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=36.79 E-value=3e+02 Score=24.37 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=38.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcc
Q 024407 101 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 166 (268)
Q Consensus 101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~ 166 (268)
+.+++-+..|++-.+-....+..-.... . ....-+++||.+.++++-.. |.++++-+.+..
T Consensus 329 kgF~~l~~~G~L~~f~st~~~~lL~~~~---~-~~~~~~~~Sp~~~~Ll~e~~-gki~~~~l~Nr~ 389 (733)
T COG4590 329 KGFYSLYRNGTLQSFYSTSEKLLLFERA---Y-QAPQLVAMSPNQAYLLSEDQ-GKIRLAQLENRN 389 (733)
T ss_pred ceEEEEcCCCceeeeecccCcceehhhh---h-cCcceeeeCcccchheeecC-CceEEEEecCCC
Confidence 4567777788877765544443321111 1 13344688999999887655 668888877643
No 484
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=36.32 E-value=2.9e+02 Score=23.95 Aligned_cols=68 Identities=16% Similarity=0.061 Sum_probs=41.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
.++++.|.+++.. +.+|..|.+... ...++..........-......+.|..++. ....+.+|.|.-|
T Consensus 329 ~l~~v~~~~d~~~-~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKKEA-WAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCCcE-EEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 4788888877665 456677877665 445555443322223345677888866544 4555566776544
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=36.31 E-value=2.4e+02 Score=23.06 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=36.9
Q ss_pred CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee------CCCcEEEEECCCcce
Q 024407 110 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS------LDKSAKLWDARTLEL 167 (268)
Q Consensus 110 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~------~d~~i~iwd~~~~~~ 167 (268)
..|++||..+.+-.. + ..+-...|+++.|..+.+.++++. ....+..||+.+...
T Consensus 16 ~~lC~yd~~~~qW~~-~--g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-P--GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-C--CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 348899987754322 2 123567899999886666666653 455788999887643
No 486
>PRK13684 Ycf48-like protein; Provisional
Probab=34.93 E-value=2.7e+02 Score=23.27 Aligned_cols=70 Identities=4% Similarity=-0.039 Sum_probs=41.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEEC
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~ 162 (268)
.+.++.+.|++.. +.++.+|.+. .....++....+.....-+.....+.+..++.. +..+..|.|.-++.
T Consensus 261 ~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 261 GYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYVG 330 (334)
T ss_pred ceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEecC
Confidence 4677888887664 4566778664 445555554443211122345667776655544 55666788877754
No 487
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=34.71 E-value=2.7e+02 Score=23.26 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=27.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEe
Q 024407 99 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 151 (268)
Q Consensus 99 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 151 (268)
+|+.-++=+..|.+.-+|..+|+...... -+.....++|. |.+++++
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~----vpG~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF----LPGFTRGLAFA--GDFAFVG 258 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEE----CCCCCccccee--CCEEEEE
Confidence 45556666777888888877665433221 23445566665 6666544
No 488
>PLN02153 epithiospecifier protein
Probab=34.40 E-value=2.7e+02 Score=23.14 Aligned_cols=13 Identities=8% Similarity=0.286 Sum_probs=9.3
Q ss_pred CcEEEEECCCcce
Q 024407 155 KSAKLWDARTLEL 167 (268)
Q Consensus 155 ~~i~iwd~~~~~~ 167 (268)
..+.+||+.+.+-
T Consensus 217 ~~v~~yd~~~~~W 229 (341)
T PLN02153 217 NAVQFFDPASGKW 229 (341)
T ss_pred CceEEEEcCCCcE
Confidence 4588899887654
No 489
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=33.13 E-value=47 Score=30.38 Aligned_cols=70 Identities=9% Similarity=0.061 Sum_probs=0.0
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEE-----------EEEcCCCCEEEEee
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS-----------LAKAADGSHFLTGS 152 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-----------v~~s~~~~~l~s~~ 152 (268)
++.|..++..++|.+.+..+++++-.| ..|.+.+....++... .+.+..+.. ++|+...+....++
T Consensus 311 fkAhkspiSaLcfdqsgsllViasi~g-~nVnvfRimet~~t~~--~~~qs~~~s~ra~t~aviqdicfs~~s~~r~~gs 387 (788)
T KOG2109|consen 311 FKAHKSPISALCFDQSGSLLVIASITG-RNVNVFRIMETVCTVN--VSDQSLVVSPRANTAAVIQDICFSEVSTIRTAGS 387 (788)
T ss_pred eeeecCcccccccccCceEEEEEeecc-ceeeeEEecccccccc--ccccccccchhcchHHHHHHHhhhhhcceEeecc
Q ss_pred CCCc
Q 024407 153 LDKS 156 (268)
Q Consensus 153 ~d~~ 156 (268)
.+|+
T Consensus 388 c~Ge 391 (788)
T KOG2109|consen 388 CEGE 391 (788)
T ss_pred cCCC
No 490
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.99 E-value=2.4e+02 Score=22.11 Aligned_cols=88 Identities=23% Similarity=0.229 Sum_probs=48.5
Q ss_pred CCEEEEEeC--CCcEEEEECCCCceeeecccc--cCcccceEEEEEcCCCCEEEE-eeCCCcEEEEECCCcceeeeeecC
Q 024407 100 NRTIISAGE--DAIVRIWDTETGKLLKESDKE--TGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTE 174 (268)
Q Consensus 100 ~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~ 174 (268)
|..+.+.|. ...|+.||+++++.+...... ......++.+ +.++.. .=.|+....+|.++.+++..+.-+
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~ 130 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFSYE 130 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhcccccC
Confidence 445566654 345999999999877654322 0111122221 333332 235777889999998888776433
Q ss_pred CceeEEEEccCCCeEEEeec
Q 024407 175 RPVNAVTMSPLLDHVVLGGG 194 (268)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~ 194 (268)
..-..+ ..++..+.++.|
T Consensus 131 GeGWgL--t~d~~~LimsdG 148 (262)
T COG3823 131 GEGWGL--TSDDKNLIMSDG 148 (262)
T ss_pred Ccceee--ecCCcceEeeCC
Confidence 333333 333455555544
No 491
>PHA02790 Kelch-like protein; Provisional
Probab=32.00 E-value=3.6e+02 Score=23.87 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=32.5
Q ss_pred CCCEEEEEeCC---CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce
Q 024407 99 LNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 99 ~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 167 (268)
+|+..+.||.+ ..+..||.++++-.. ........... ++ ..-++...+.| |.+..||+++.+-
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~-~~~m~~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp~~~~W 427 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQF-GPSTYYPHYKS-CA-LVFGRRLFLVG---RNAEFYCESSNTW 427 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEe-CCCCCCccccc-eE-EEECCEEEEEC---CceEEecCCCCcE
Confidence 45556677755 347789988764322 11111011111 12 12355556665 3467899887643
No 492
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=30.86 E-value=2.9e+02 Score=25.98 Aligned_cols=71 Identities=8% Similarity=0.090 Sum_probs=44.9
Q ss_pred CeEEEEEc--CCCCEEEEEeCCCcEEEEECCC--CceeeecccccCcccceEEEEEcCCC---C---EEEEeeCCCcEEE
Q 024407 90 RINRAVWG--PLNRTIISAGEDAIVRIWDTET--GKLLKESDKETGHKKTITSLAKAADG---S---HFLTGSLDKSAKL 159 (268)
Q Consensus 90 ~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~h~~~v~~v~~s~~~---~---~l~s~~~d~~i~i 159 (268)
....++++ ...+.||.++....|.+|=... .+....-. -.|..-|-+|.|-++. . .+++++-.|.+.+
T Consensus 165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s--~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS--HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc--cccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 56778887 6677888888778777774433 22211111 1234456666665432 2 6788899999998
Q ss_pred EEC
Q 024407 160 WDA 162 (268)
Q Consensus 160 wd~ 162 (268)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 887
No 493
>PRK05560 DNA gyrase subunit A; Validated
Probab=30.84 E-value=4.9e+02 Score=25.05 Aligned_cols=110 Identities=10% Similarity=0.025 Sum_probs=53.2
Q ss_pred CCCEEEEeecCCcEEEeecCCCcE-------EEEEecCCCceeeee-ecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQ-------LFTFNFDSPARSVDF-AVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
+...++..+.+|.+|.-++..... ...+..+..+..+.. ...+.++++.+.+......... ++......
T Consensus 603 ~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~e---Ip~~gr~~ 679 (805)
T PRK05560 603 DDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESD---VRPMGRTA 679 (805)
T ss_pred CCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhh---cCccCccc
Confidence 566789999999999888754332 112222222222222 2233455555444322222211 11111112
Q ss_pred CCceEEEEecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEECC
Q 024407 77 GGESVLILKGPQGRINR-AVWGPLNRTIISAGEDAIVRIWDTE 118 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~iwd~~ 118 (268)
.|.....+... ..|.. +.+.++...++..+..|.++-..+.
T Consensus 680 ~Gv~~i~L~~~-E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~ 721 (805)
T PRK05560 680 RGVRGIKLREG-DEVVSMDVVREDSQEILTVTENGYGKRTPVS 721 (805)
T ss_pred CCcccccCCCC-CEEEEEEEEcCCCcEEEEEEeCCeEEEEEHH
Confidence 23344444332 23443 3444444478888888988877653
No 494
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=30.54 E-value=92 Score=29.44 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=50.2
Q ss_pred EEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce
Q 024407 93 RAVWGPLNRTIISAGEDAI-----VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 93 ~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 167 (268)
.+.|-|.|..++|-+.||. |+++.- +|-..-.+...-+....+..++|.-.+..++. +..+.|++|-.++...
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYHW 328 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceEE
Confidence 4789999999988775542 444432 22111111111123333444555444443333 3447799998877533
Q ss_pred eeeeecC-CceeEEEEccCCCeEEEe
Q 024407 168 IKTYVTE-RPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 168 ~~~~~~~-~~~~~~~~~~~~~~~~~~ 192 (268)
-.+...+ ..+.-+.|+|.....++-
T Consensus 329 YLK~e~~ip~~s~vkwhpe~~nTl~f 354 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEEKNTLLF 354 (1243)
T ss_pred EEEEeecCCCcceeeeccccCcEEEE
Confidence 2221111 234456788877665543
No 495
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.01 E-value=5.1e+02 Score=24.60 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=25.2
Q ss_pred cceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 231 GPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 231 ~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+.+..+..||+.++||-=..+|.|++-..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch
Confidence 4578899999999999888889988865553
No 496
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=28.94 E-value=24 Score=31.01 Aligned_cols=93 Identities=12% Similarity=0.214 Sum_probs=59.3
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCccee
Q 024407 90 RINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 168 (268)
Q Consensus 90 ~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 168 (268)
.-.+++|.-++..+ +.+-..+.+.+||+.+... .++.....|+... +.|++....++.+...+.+.++..++.+.+
T Consensus 76 ~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~i 152 (615)
T KOG2247|consen 76 KALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRI 152 (615)
T ss_pred hHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhh
Confidence 33456777777654 4566889999999976532 2232222222222 567888888888888899999998876544
Q ss_pred eeee-cCCceeEEEEccC
Q 024407 169 KTYV-TERPVNAVTMSPL 185 (268)
Q Consensus 169 ~~~~-~~~~~~~~~~~~~ 185 (268)
-... +.+.....++.+.
T Consensus 153 iv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 153 IVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred hhhcccccceeEEEeccc
Confidence 4333 4455666666664
No 497
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=28.38 E-value=3.9e+02 Score=23.05 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=37.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe----CCCc-EEEEECCCC-ceeeecccccCcccceEEEEEcCCCCEEEEe-----eCCC
Q 024407 87 PQGRINRAVWGPLNRTIISAG----EDAI-VRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTG-----SLDK 155 (268)
Q Consensus 87 ~~~~v~~~~~~~~~~~l~s~~----~dg~-i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-----~~d~ 155 (268)
-...+..+.|+|....+++=| .+.. -|||-+++. ...+.+.... -...+..=-|.+||+.+.=- +.+.
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~ 264 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDF 264 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCce
Confidence 456678899999876665543 3332 477765542 2222222111 01122222478888866432 2355
Q ss_pred cEEEEECCCccee
Q 024407 156 SAKLWDARTLELI 168 (268)
Q Consensus 156 ~i~iwd~~~~~~~ 168 (268)
.|.-+|+.+++..
T Consensus 265 ~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 265 WIAGYDPDTGERR 277 (386)
T ss_dssp EEEEE-TTT--EE
T ss_pred EEEeeCCCCCCce
Confidence 6777888877553
No 498
>PHA03092 semaphorin-like protein; Provisional
Probab=27.69 E-value=60 Score=22.08 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=26.5
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeCCCcceec
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 267 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~~~~ 267 (268)
+++.. .|..-|++|..+|.=+.|..++...+||
T Consensus 65 tsikv-ed~dtlvcgtnngnpkcwkidgsdntIK 97 (134)
T PHA03092 65 TSIKV-EDKDTLVCGTNNGNPKCWKIDGSDNTIK 97 (134)
T ss_pred EEEEE-ccCceEEEecCCCCcceEEEcCccchhh
Confidence 45554 5667899999999999999998877775
No 499
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=25.92 E-value=1.1e+02 Score=16.09 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.8
Q ss_pred ceEEEEECCCCCeEEeeeCCC
Q 024407 232 PINALAFNPDGKSFSSGGEDG 252 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg 252 (268)
....|++.++|+..++|..++
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 477899999999999888765
No 500
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=25.85 E-value=3.2e+02 Score=22.03 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=34.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEE-EcCCCCEEEEeeCCCcEEE
Q 024407 101 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~-~s~~~~~l~s~~~d~~i~i 159 (268)
..++.|...|.|.|.|...-....+... .+-+..+.... |..-.-.++.++.||.|.+
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~l-psvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQL-PSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEec-CCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 3678899999999999887665555432 11111111111 2112335778888887754
Done!