Query 024407
Match_columns 268
No_of_seqs 129 out of 1695
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 07:43:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 1.3E-35 4.4E-40 242.1 32.3 235 2-262 21-260 (304)
2 1got_B GT-beta; complex (GTP-b 100.0 4.1E-35 1.4E-39 242.8 31.4 228 2-258 105-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 5.3E-35 1.8E-39 240.4 31.7 231 2-260 88-320 (321)
4 4gqb_B Methylosome protein 50; 100.0 4.9E-35 1.7E-39 242.7 31.5 234 2-262 90-332 (344)
5 2pbi_B Guanine nucleotide-bind 100.0 2.7E-34 9.2E-39 239.2 32.8 247 2-258 72-354 (354)
6 3frx_A Guanine nucleotide-bind 100.0 2.6E-34 8.9E-39 236.0 32.1 238 2-261 73-317 (319)
7 1vyh_C Platelet-activating fac 100.0 7.3E-35 2.5E-39 247.3 29.6 234 2-262 116-370 (410)
8 4gqb_B Methylosome protein 50; 100.0 2.8E-35 9.7E-40 244.2 25.2 236 2-262 38-290 (344)
9 1vyh_C Platelet-activating fac 100.0 1.3E-34 4.5E-39 245.7 29.2 231 2-260 158-410 (410)
10 3iz6_a 40S ribosomal protein R 100.0 3.8E-34 1.3E-38 240.5 29.1 249 2-263 74-377 (380)
11 3zwl_B Eukaryotic translation 100.0 1.3E-33 4.6E-38 234.5 31.4 260 2-264 82-349 (369)
12 1nr0_A Actin interacting prote 100.0 1.2E-33 4E-38 251.3 30.7 247 2-262 67-356 (611)
13 4ery_A WD repeat-containing pr 100.0 1.3E-32 4.5E-37 224.7 34.1 243 2-260 31-311 (312)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.2E-33 1.1E-37 231.9 30.6 251 2-263 24-337 (345)
15 1got_B GT-beta; complex (GTP-b 100.0 1.8E-32 6.1E-37 226.9 33.0 238 2-262 63-302 (340)
16 4g56_B MGC81050 protein; prote 100.0 2.5E-33 8.5E-38 233.7 28.0 236 2-264 102-346 (357)
17 3ow8_A WD repeat-containing pr 100.0 4.4E-33 1.5E-37 228.9 29.1 230 5-262 47-280 (321)
18 4g56_B MGC81050 protein; prote 100.0 1.9E-33 6.5E-38 234.4 27.0 238 1-262 49-302 (357)
19 1erj_A Transcriptional repress 100.0 5.1E-32 1.7E-36 228.5 30.5 243 2-262 72-342 (393)
20 2xzm_R RACK1; ribosome, transl 100.0 1.8E-31 6.1E-36 221.1 32.0 241 2-261 84-340 (343)
21 2pm7_B Protein transport prote 100.0 9.6E-32 3.3E-36 218.5 29.6 240 2-262 17-286 (297)
22 1erj_A Transcriptional repress 100.0 1.5E-31 5.2E-36 225.6 30.8 234 2-261 131-389 (393)
23 1nr0_A Actin interacting prote 100.0 6.5E-32 2.2E-36 240.1 29.6 249 2-262 198-568 (611)
24 2hes_X YDR267CP; beta-propelle 100.0 2.5E-31 8.5E-36 219.2 30.5 238 2-261 66-328 (330)
25 3bg1_A Protein SEC13 homolog; 100.0 4.7E-32 1.6E-36 222.3 25.7 242 2-262 21-294 (316)
26 4h5i_A Guanine nucleotide-exch 100.0 1.5E-32 5E-37 229.7 22.5 198 2-265 141-347 (365)
27 2hes_X YDR267CP; beta-propelle 100.0 2.2E-31 7.7E-36 219.5 29.1 247 2-262 22-281 (330)
28 2ynn_A Coatomer subunit beta'; 100.0 4.2E-31 1.4E-35 215.4 29.8 234 2-262 63-303 (304)
29 4aez_A CDC20, WD repeat-contai 100.0 7.8E-31 2.7E-35 221.7 32.4 236 2-262 142-381 (401)
30 4gga_A P55CDC, cell division c 100.0 6.9E-31 2.3E-35 223.4 32.2 236 2-261 155-395 (420)
31 4ggc_A P55CDC, cell division c 100.0 4E-30 1.4E-34 209.7 32.5 236 2-261 75-315 (318)
32 3frx_A Guanine nucleotide-bind 100.0 6.7E-31 2.3E-35 215.7 27.1 198 2-262 25-228 (319)
33 3dm0_A Maltose-binding peripla 100.0 1.5E-30 5.1E-35 234.5 31.8 240 2-260 438-692 (694)
34 2j04_B YDR362CP, TAU91; beta p 100.0 7.9E-32 2.7E-36 234.6 22.3 237 3-262 170-429 (524)
35 3ei3_B DNA damage-binding prot 100.0 4.8E-30 1.6E-34 215.2 30.7 241 2-261 81-382 (383)
36 2ymu_A WD-40 repeat protein; u 100.0 2.7E-30 9.3E-35 227.6 30.2 224 2-258 352-577 (577)
37 2ymu_A WD-40 repeat protein; u 100.0 3.3E-30 1.1E-34 227.0 30.4 229 2-262 311-540 (577)
38 2j04_B YDR362CP, TAU91; beta p 100.0 2.4E-31 8.2E-36 231.5 21.3 244 5-264 224-520 (524)
39 1gxr_A ESG1, transducin-like e 100.0 1E-29 3.5E-34 208.7 29.9 234 2-263 59-298 (337)
40 1gxr_A ESG1, transducin-like e 100.0 5.5E-29 1.9E-33 204.3 33.8 228 2-259 105-335 (337)
41 4e54_B DNA damage-binding prot 100.0 1.1E-30 3.6E-35 223.3 24.3 237 2-262 172-431 (435)
42 2xzm_R RACK1; ribosome, transl 100.0 2.2E-29 7.4E-34 208.6 31.2 232 3-262 35-286 (343)
43 3vl1_A 26S proteasome regulato 100.0 3.1E-31 1.1E-35 224.8 20.5 234 2-262 64-323 (420)
44 3lrv_A PRE-mRNA-splicing facto 100.0 5.6E-30 1.9E-34 212.1 26.9 238 2-262 44-293 (343)
45 2pm9_A Protein WEB1, protein t 100.0 1.6E-30 5.4E-35 219.9 23.3 244 1-262 19-295 (416)
46 4aow_A Guanine nucleotide-bind 100.0 4.8E-29 1.7E-33 205.2 31.5 240 2-261 94-337 (340)
47 1r5m_A SIR4-interacting protei 100.0 1.1E-29 3.8E-34 214.7 27.8 242 2-261 157-425 (425)
48 3dwl_C Actin-related protein 2 100.0 4.1E-31 1.4E-35 221.1 18.6 240 2-260 19-280 (377)
49 3vl1_A 26S proteasome regulato 100.0 1.7E-29 5.6E-34 214.2 28.2 236 2-261 105-365 (420)
50 3f3f_A Nucleoporin SEH1; struc 100.0 3.4E-29 1.2E-33 205.8 28.8 254 2-262 19-338 (351)
51 3gre_A Serine/threonine-protei 100.0 5.6E-30 1.9E-34 218.5 22.7 252 2-258 71-437 (437)
52 3jrp_A Fusion protein of prote 100.0 6.3E-29 2.2E-33 207.2 28.6 243 1-261 18-287 (379)
53 3dw8_B Serine/threonine-protei 100.0 5.1E-29 1.8E-33 212.7 28.6 245 2-262 36-374 (447)
54 4a11_B DNA excision repair pro 100.0 1.3E-28 4.4E-33 207.3 29.3 244 2-262 51-366 (408)
55 1r5m_A SIR4-interacting protei 100.0 2.7E-28 9.2E-33 206.2 30.7 234 2-262 53-362 (425)
56 3k26_A Polycomb protein EED; W 100.0 1.7E-29 5.7E-34 209.7 22.8 236 2-260 77-365 (366)
57 1k8k_C P40, ARP2/3 complex 41 100.0 1E-28 3.6E-33 205.6 27.4 236 2-261 16-274 (372)
58 4e54_B DNA damage-binding prot 100.0 7.5E-30 2.6E-34 218.0 20.6 200 2-262 127-328 (435)
59 3i2n_A WD repeat-containing pr 100.0 6.6E-29 2.3E-33 205.6 25.6 240 2-262 26-292 (357)
60 1sq9_A Antiviral protein SKI8; 100.0 2.2E-29 7.5E-34 211.8 22.4 251 2-261 70-395 (397)
61 3mkq_A Coatomer beta'-subunit; 100.0 1E-28 3.6E-33 225.6 28.6 234 1-262 20-260 (814)
62 3k26_A Polycomb protein EED; W 100.0 2E-29 7E-34 209.2 21.7 246 2-262 26-319 (366)
63 3dwl_C Actin-related protein 2 100.0 1.9E-29 6.7E-34 210.9 20.3 247 2-259 63-377 (377)
64 2xyi_A Probable histone-bindin 100.0 1.1E-28 3.8E-33 210.5 25.1 255 2-262 136-411 (430)
65 3dm0_A Maltose-binding peripla 100.0 9.8E-28 3.3E-32 216.2 32.4 234 2-262 390-633 (694)
66 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-27 4.1E-32 199.2 30.2 247 2-262 60-362 (372)
67 2pm9_A Protein WEB1, protein t 100.0 9.9E-29 3.4E-33 208.9 23.6 243 1-262 74-338 (416)
68 3i2n_A WD repeat-containing pr 100.0 1.8E-28 6E-33 203.0 24.4 245 2-261 73-353 (357)
69 1sq9_A Antiviral protein SKI8; 100.0 4.3E-28 1.5E-32 203.8 27.1 252 2-262 24-323 (397)
70 1yfq_A Cell cycle arrest prote 100.0 3.1E-28 1.1E-32 200.7 24.3 234 2-262 19-283 (342)
71 3sfz_A APAF-1, apoptotic pepti 100.0 9E-28 3.1E-32 228.7 30.9 244 1-261 622-913 (1249)
72 4aez_A CDC20, WD repeat-contai 100.0 4.2E-27 1.4E-31 198.8 31.7 231 3-262 100-337 (401)
73 3v7d_B Cell division control p 100.0 1.4E-27 4.9E-32 205.0 28.0 230 3-262 129-382 (464)
74 2w18_A PALB2, fancn, partner a 100.0 3E-28 1E-32 197.6 21.6 213 1-260 118-356 (356)
75 4aow_A Guanine nucleotide-bind 100.0 4.8E-27 1.6E-31 193.3 26.6 198 2-262 46-247 (340)
76 3sfz_A APAF-1, apoptotic pepti 100.0 9.7E-29 3.3E-33 235.4 18.8 228 2-260 1011-1248(1249)
77 2aq5_A Coronin-1A; WD40 repeat 100.0 3.8E-27 1.3E-31 199.0 26.4 246 2-263 42-301 (402)
78 3odt_A Protein DOA1; ubiquitin 100.0 5.9E-27 2E-31 190.4 26.2 227 2-262 26-256 (313)
79 3jro_A Fusion protein of prote 100.0 1.7E-27 5.9E-32 216.4 25.4 243 1-262 16-286 (753)
80 4gq1_A NUP37; propeller, trans 100.0 2.7E-27 9.2E-32 199.7 24.5 235 2-260 97-388 (393)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 2.1E-27 7.3E-32 200.6 22.6 236 2-262 89-343 (402)
82 4h5i_A Guanine nucleotide-exch 100.0 1.2E-26 4E-31 193.9 26.6 244 2-262 22-301 (365)
83 3odt_A Protein DOA1; ubiquitin 100.0 2.9E-26 1E-30 186.3 27.7 226 2-263 67-298 (313)
84 3zwl_B Eukaryotic translation 100.0 2E-25 6.9E-30 185.1 31.6 235 1-262 39-305 (369)
85 3v7d_B Cell division control p 100.0 1.6E-25 5.5E-30 192.3 31.1 233 2-263 170-423 (464)
86 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.5E-25 1.5E-29 189.1 32.7 245 2-259 12-337 (450)
87 1p22_A F-BOX/WD-repeat protein 100.0 9.8E-26 3.4E-30 192.4 28.4 225 2-261 139-365 (435)
88 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.1E-26 1.4E-30 195.6 25.6 238 2-262 110-392 (450)
89 3dw8_B Serine/threonine-protei 100.0 3.9E-26 1.3E-30 194.8 24.9 240 2-259 101-444 (447)
90 4ery_A WD repeat-containing pr 100.0 3.1E-25 1E-29 181.0 29.2 202 34-262 22-224 (312)
91 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-25 4.4E-30 191.7 27.3 233 4-262 181-415 (435)
92 3mmy_A MRNA export factor; mRN 100.0 4.3E-26 1.5E-30 189.1 23.6 231 2-258 47-343 (368)
93 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-25 5.4E-30 185.6 26.6 209 29-259 8-223 (345)
94 1pgu_A Actin interacting prote 99.9 1.6E-25 5.5E-30 198.1 28.1 235 2-262 26-284 (615)
95 2pm7_B Protein transport prote 99.9 1.6E-25 5.4E-30 181.8 25.1 210 34-262 8-239 (297)
96 2oaj_A Protein SNI1; WD40 repe 99.9 6.5E-26 2.2E-30 209.3 25.6 240 1-261 442-783 (902)
97 1pgu_A Actin interacting prote 99.9 3.3E-25 1.1E-29 196.1 29.0 236 2-261 72-328 (615)
98 2j04_A TAU60, YPL007P, hypothe 99.9 3.1E-26 1.1E-30 196.9 21.4 222 2-260 23-296 (588)
99 3lrv_A PRE-mRNA-splicing facto 99.9 8.1E-25 2.8E-29 181.0 29.1 231 2-266 84-338 (343)
100 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1E-24 3.5E-29 186.5 29.4 227 6-263 209-444 (445)
101 3iz6_a 40S ribosomal protein R 99.9 3.3E-26 1.1E-30 192.1 19.4 225 15-262 45-281 (380)
102 2pbi_B Guanine nucleotide-bind 99.9 7.2E-25 2.5E-29 182.3 27.3 180 2-194 162-346 (354)
103 1l0q_A Surface layer protein; 99.9 5.3E-24 1.8E-28 178.7 32.8 233 2-262 39-276 (391)
104 2ovr_B FBW7, F-BOX/WD repeat p 99.9 6.9E-25 2.4E-29 187.6 27.7 223 2-262 125-349 (445)
105 2oaj_A Protein SNI1; WD40 repe 99.9 4.8E-25 1.7E-29 203.5 28.2 243 1-259 24-310 (902)
106 3vu4_A KMHSV2; beta-propeller 99.9 1.4E-24 4.8E-29 180.6 27.9 246 2-262 27-337 (355)
107 3mkq_A Coatomer beta'-subunit; 99.9 7.9E-25 2.7E-29 200.0 27.2 234 2-262 63-303 (814)
108 1yfq_A Cell cycle arrest prote 99.9 3.2E-25 1.1E-29 182.6 20.3 231 2-258 64-321 (342)
109 1l0q_A Surface layer protein; 99.9 4E-23 1.4E-27 173.4 32.3 227 7-262 3-234 (391)
110 3bws_A Protein LP49; two-domai 99.9 2.5E-23 8.6E-28 176.9 31.4 232 2-261 177-432 (433)
111 3bg1_A Protein SEC13 homolog; 99.9 7E-25 2.4E-29 179.5 19.9 209 33-261 11-247 (316)
112 4gga_A P55CDC, cell division c 99.9 1.1E-22 3.8E-27 172.7 32.8 231 2-262 113-354 (420)
113 4ggc_A P55CDC, cell division c 99.9 2.4E-22 8.3E-27 163.5 32.8 231 2-262 33-274 (318)
114 2j04_A TAU60, YPL007P, hypothe 99.9 2.9E-25 1E-29 190.9 15.8 231 1-250 92-350 (588)
115 3f3f_A Nucleoporin SEH1; struc 99.9 2.6E-23 8.8E-28 170.7 26.3 211 33-262 9-250 (351)
116 3jrp_A Fusion protein of prote 99.9 3.1E-23 1E-27 172.7 26.7 210 33-262 9-241 (379)
117 2xyi_A Probable histone-bindin 99.9 2.4E-23 8.3E-28 177.4 26.5 216 29-261 122-353 (430)
118 3ei3_B DNA damage-binding prot 99.9 2.8E-23 9.7E-28 174.0 26.2 219 21-262 58-283 (383)
119 3bws_A Protein LP49; two-domai 99.9 1.7E-22 5.9E-27 171.7 31.3 232 2-262 130-391 (433)
120 3gre_A Serine/threonine-protei 99.9 3E-24 1E-28 183.0 19.4 234 2-262 35-293 (437)
121 3mmy_A MRNA export factor; mRN 99.9 3.7E-23 1.3E-27 171.4 25.3 226 20-262 23-305 (368)
122 4a11_B DNA excision repair pro 99.9 1.7E-23 6E-28 175.9 22.5 240 13-262 20-277 (408)
123 4gq1_A NUP37; propeller, trans 99.9 1.5E-22 5.2E-27 170.6 19.7 250 2-263 26-350 (393)
124 3jro_A Fusion protein of prote 99.9 1.1E-21 3.8E-26 178.3 25.5 210 33-262 7-239 (753)
125 2hqs_A Protein TOLB; TOLB, PAL 99.9 5E-21 1.7E-25 162.5 27.0 237 2-262 70-345 (415)
126 3vu4_A KMHSV2; beta-propeller 99.9 4.8E-21 1.7E-25 159.2 25.4 160 2-165 66-272 (355)
127 2w18_A PALB2, fancn, partner a 99.9 1.5E-21 5.1E-26 158.4 19.7 150 2-162 186-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 8.7E-20 3E-24 154.8 31.2 231 6-263 143-389 (415)
129 3u4y_A Uncharacterized protein 99.9 9.8E-19 3.3E-23 143.3 28.0 248 2-262 47-305 (331)
130 1jmx_B Amine dehydrogenase; ox 99.9 6.3E-19 2.1E-23 145.1 26.6 231 1-262 6-326 (349)
131 2ecf_A Dipeptidyl peptidase IV 99.9 9.5E-20 3.2E-24 165.1 22.9 233 2-261 44-367 (741)
132 1nir_A Nitrite reductase; hemo 99.9 5E-19 1.7E-23 154.9 26.1 244 2-262 186-459 (543)
133 1ri6_A Putative isomerase YBHE 99.9 8.6E-19 2.9E-23 143.9 25.7 241 2-262 45-309 (343)
134 3vgz_A Uncharacterized protein 99.8 8.2E-18 2.8E-22 138.7 29.5 233 2-262 48-304 (353)
135 1xfd_A DIP, dipeptidyl aminope 99.8 2.2E-19 7.5E-24 162.2 20.3 238 1-260 23-341 (723)
136 1pby_B Quinohemoprotein amine 99.8 8.5E-18 2.9E-22 137.6 27.5 223 7-262 2-311 (337)
137 1nir_A Nitrite reductase; hemo 99.8 5.8E-18 2E-22 148.2 27.6 241 2-262 145-403 (543)
138 2ojh_A Uncharacterized protein 99.8 4E-18 1.4E-22 136.6 24.3 223 10-262 16-259 (297)
139 3u4y_A Uncharacterized protein 99.8 1.8E-17 6E-22 135.8 27.7 237 1-262 4-253 (331)
140 2ojh_A Uncharacterized protein 99.8 2.8E-18 9.7E-23 137.5 22.2 227 2-252 49-293 (297)
141 1ri6_A Putative isomerase YBHE 99.8 1.2E-17 4.3E-22 136.9 25.7 244 5-261 4-262 (343)
142 3vgz_A Uncharacterized protein 99.8 6.6E-17 2.3E-21 133.3 29.2 226 2-251 96-334 (353)
143 3hfq_A Uncharacterized protein 99.8 5.3E-17 1.8E-21 134.0 26.8 242 2-262 47-318 (347)
144 2oit_A Nucleoporin 214KDA; NH2 99.8 9.7E-18 3.3E-22 143.0 22.3 184 2-191 44-257 (434)
145 1xfd_A DIP, dipeptidyl aminope 99.8 9.8E-18 3.3E-22 151.4 22.2 237 2-261 68-393 (723)
146 3scy_A Hypothetical bacterial 99.8 4.5E-16 1.6E-20 129.2 30.4 244 2-262 57-338 (361)
147 2ecf_A Dipeptidyl peptidase IV 99.8 6.7E-18 2.3E-22 153.0 20.8 231 2-261 116-413 (741)
148 2z3z_A Dipeptidyl aminopeptida 99.8 2.5E-17 8.6E-22 148.5 23.4 236 2-260 89-388 (706)
149 2z3z_A Dipeptidyl aminopeptida 99.8 4.4E-17 1.5E-21 146.9 24.4 240 2-262 128-436 (706)
150 3o4h_A Acylamino-acid-releasin 99.8 5.1E-18 1.8E-22 149.8 17.8 230 2-259 29-274 (582)
151 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.7E-16 9.2E-21 131.0 26.7 245 2-262 47-342 (365)
152 2oit_A Nucleoporin 214KDA; NH2 99.8 1.7E-17 5.8E-22 141.5 17.9 168 86-261 90-278 (434)
153 1k32_A Tricorn protease; prote 99.8 1.5E-16 5E-21 149.5 22.5 225 2-259 252-500 (1045)
154 1k32_A Tricorn protease; prote 99.7 3E-16 1E-20 147.4 23.8 179 2-196 303-493 (1045)
155 1z68_A Fibroblast activation p 99.7 8.7E-17 3E-21 145.3 17.7 234 1-260 22-343 (719)
156 3hfq_A Uncharacterized protein 99.7 5.5E-14 1.9E-18 115.9 27.7 242 8-261 4-271 (347)
157 4a5s_A Dipeptidyl peptidase 4 99.7 5.5E-15 1.9E-19 134.1 22.8 242 1-260 23-350 (740)
158 1z68_A Fibroblast activation p 99.7 6.7E-16 2.3E-20 139.5 16.6 234 2-261 67-391 (719)
159 1q7f_A NHL, brain tumor CG1071 99.7 4.7E-13 1.6E-17 107.3 29.5 233 2-262 37-281 (286)
160 1pby_B Quinohemoprotein amine 99.7 5.3E-14 1.8E-18 114.9 24.0 196 2-210 41-313 (337)
161 3fvz_A Peptidyl-glycine alpha- 99.7 6.6E-13 2.3E-17 108.9 29.9 238 2-262 31-323 (329)
162 3no2_A Uncharacterized protein 99.6 1.4E-12 4.7E-17 104.4 28.4 221 4-249 3-231 (276)
163 3o4h_A Acylamino-acid-releasin 99.6 2.4E-14 8.3E-19 126.3 20.0 220 1-261 71-313 (582)
164 3scy_A Hypothetical bacterial 99.6 5.3E-12 1.8E-16 104.5 31.2 240 6-261 13-291 (361)
165 3pe7_A Oligogalacturonate lyas 99.6 2.9E-13 1E-17 113.0 22.7 237 1-262 42-330 (388)
166 3pe7_A Oligogalacturonate lyas 99.6 1.7E-13 5.8E-18 114.4 21.0 239 2-262 88-383 (388)
167 1jmx_B Amine dehydrogenase; ox 99.6 5.5E-13 1.9E-17 109.4 22.1 197 2-209 50-327 (349)
168 3azo_A Aminopeptidase; POP fam 99.6 2E-13 6.7E-18 122.2 20.5 243 2-261 31-323 (662)
169 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.3E-11 4.4E-16 102.6 25.6 237 8-260 4-290 (365)
170 3c5m_A Oligogalacturonate lyas 99.5 6.2E-12 2.1E-16 105.0 22.6 231 2-260 88-381 (396)
171 2xdw_A Prolyl endopeptidase; a 99.5 1.9E-11 6.6E-16 110.3 27.0 240 2-262 132-415 (710)
172 3dsm_A Uncharacterized protein 99.5 4.2E-11 1.4E-15 98.1 24.7 227 5-262 53-303 (328)
173 2gop_A Trilobed protease; beta 99.5 2.1E-11 7.2E-16 100.2 22.8 218 5-260 23-290 (347)
174 1rwi_B Serine/threonine-protei 99.5 3.7E-11 1.3E-15 95.1 22.8 232 2-263 31-266 (270)
175 3azo_A Aminopeptidase; POP fam 99.5 6E-12 2.1E-16 112.5 20.3 240 3-260 87-366 (662)
176 3e5z_A Putative gluconolactona 99.5 8.1E-11 2.8E-15 94.7 25.1 226 2-266 35-289 (296)
177 2oiz_A Aromatic amine dehydrog 99.5 3.4E-11 1.2E-15 100.1 22.7 148 4-163 13-181 (361)
178 3c5m_A Oligogalacturonate lyas 99.5 1.4E-11 4.7E-16 102.9 20.5 232 1-262 42-330 (396)
179 2dg1_A DRP35, lactonase; beta 99.4 4.2E-10 1.4E-14 91.9 26.4 240 2-261 52-314 (333)
180 4a5s_A Dipeptidyl peptidase 4 99.4 8.6E-12 3E-16 113.1 17.8 193 2-206 69-352 (740)
181 2bkl_A Prolyl endopeptidase; m 99.4 2.3E-11 8E-16 109.5 20.0 239 2-262 128-398 (695)
182 2dg1_A DRP35, lactonase; beta 99.4 1.3E-09 4.3E-14 89.1 26.3 241 1-262 12-264 (333)
183 2gop_A Trilobed protease; beta 99.4 5.6E-10 1.9E-14 91.6 23.4 221 2-260 66-330 (347)
184 2oiz_A Aromatic amine dehydrog 99.3 1.7E-09 5.8E-14 89.8 26.4 218 1-243 56-360 (361)
185 2xdw_A Prolyl endopeptidase; a 99.3 3.5E-10 1.2E-14 102.1 23.8 241 3-260 80-365 (710)
186 1qks_A Cytochrome CD1 nitrite 99.3 1.7E-09 5.7E-14 94.9 26.8 190 4-262 165-374 (567)
187 1qks_A Cytochrome CD1 nitrite 99.3 2.7E-09 9.1E-14 93.6 27.4 255 1-260 203-537 (567)
188 1yr2_A Prolyl oligopeptidase; 99.3 6.5E-10 2.2E-14 100.9 23.8 237 2-262 170-442 (741)
189 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 2.3E-09 8E-14 86.5 24.4 228 2-261 25-299 (314)
190 2bkl_A Prolyl endopeptidase; m 99.3 1.3E-09 4.3E-14 98.2 22.9 238 2-260 75-348 (695)
191 3dsm_A Uncharacterized protein 99.2 5.8E-09 2E-13 85.3 23.9 220 15-262 16-254 (328)
192 2z2n_A Virginiamycin B lyase; 99.2 8.7E-08 3E-12 76.5 29.9 229 2-261 22-255 (299)
193 2mad_H Methylamine dehydrogena 99.2 1.2E-07 4E-12 79.0 30.4 117 1-125 27-162 (373)
194 3hrp_A Uncharacterized protein 99.2 6.6E-08 2.2E-12 81.6 29.1 245 2-259 138-408 (409)
195 3no2_A Uncharacterized protein 99.2 7.6E-09 2.6E-13 82.6 21.4 152 2-172 44-203 (276)
196 3fvz_A Peptidyl-glycine alpha- 99.2 9.2E-09 3.2E-13 84.1 21.7 168 88-260 23-226 (329)
197 3e5z_A Putative gluconolactona 99.2 1E-08 3.5E-13 82.3 21.3 161 81-260 20-201 (296)
198 3iuj_A Prolyl endopeptidase; h 99.1 2.2E-08 7.4E-13 90.2 22.9 237 2-261 136-405 (693)
199 1yr2_A Prolyl oligopeptidase; 99.1 2E-08 6.7E-13 91.2 22.1 237 2-260 114-392 (741)
200 1xip_A Nucleoporin NUP159; bet 99.1 4.4E-09 1.5E-13 87.5 16.4 163 2-191 45-230 (388)
201 1xip_A Nucleoporin NUP159; bet 99.1 4.7E-09 1.6E-13 87.3 16.4 144 86-247 86-230 (388)
202 2z2n_A Virginiamycin B lyase; 99.1 2.2E-06 7.4E-11 68.3 30.5 224 2-260 64-294 (299)
203 1q7f_A NHL, brain tumor CG1071 99.1 5.4E-08 1.9E-12 77.6 20.7 162 86-262 27-195 (286)
204 3sjl_D Methylamine dehydrogena 99.0 6.4E-07 2.2E-11 74.3 25.6 235 2-262 85-364 (386)
205 2qc5_A Streptogramin B lactona 99.0 4.3E-06 1.5E-10 66.6 29.6 227 2-261 27-260 (300)
206 2mad_H Methylamine dehydrogena 98.9 2E-06 6.8E-11 71.6 26.2 200 1-210 72-353 (373)
207 2ghs_A AGR_C_1268P; regucalcin 98.9 1.7E-06 5.9E-11 70.5 25.2 214 2-251 56-293 (326)
208 3dr2_A Exported gluconolactona 98.9 1E-06 3.4E-11 71.1 23.3 218 2-256 52-302 (305)
209 3g4e_A Regucalcin; six bladed 98.9 2E-06 6.8E-11 69.1 24.9 161 89-260 54-228 (297)
210 3g4e_A Regucalcin; six bladed 98.9 1.3E-06 4.6E-11 70.1 23.4 185 2-194 61-261 (297)
211 1kb0_A Quinohemoprotein alcoho 98.9 1.1E-06 3.8E-11 78.8 24.3 161 5-172 127-354 (677)
212 3sjl_D Methylamine dehydrogena 98.9 6.3E-07 2.2E-11 74.4 20.5 120 1-174 39-179 (386)
213 2qc5_A Streptogramin B lactona 98.9 1.5E-05 5.3E-10 63.3 28.9 224 2-261 69-298 (300)
214 3c75_H MADH, methylamine dehyd 98.8 4E-06 1.4E-10 70.6 25.1 233 2-262 125-403 (426)
215 1mda_H Methylamine dehydrogena 98.8 4E-07 1.4E-11 75.4 18.7 86 94-183 269-365 (368)
216 2hz6_A Endoplasmic reticulum t 98.8 2.2E-09 7.4E-14 89.4 5.0 182 5-261 8-192 (369)
217 1rwi_B Serine/threonine-protei 98.8 1E-06 3.5E-11 69.3 19.5 174 2-192 74-250 (270)
218 1yiq_A Quinohemoprotein alcoho 98.8 3.4E-06 1.2E-10 75.8 25.0 159 5-170 120-344 (689)
219 2iwa_A Glutamine cyclotransfer 98.8 2.8E-06 9.6E-11 66.9 20.9 180 2-196 28-227 (266)
220 3nol_A Glutamine cyclotransfer 98.7 2E-06 6.7E-11 67.2 18.4 176 2-193 50-243 (262)
221 2qe8_A Uncharacterized protein 98.7 7.5E-06 2.6E-10 67.2 22.4 151 91-254 122-314 (343)
222 2qe8_A Uncharacterized protein 98.7 2.7E-06 9.1E-11 69.8 19.3 170 86-263 64-281 (343)
223 3iuj_A Prolyl endopeptidase; h 98.6 3.2E-06 1.1E-10 76.1 19.2 204 38-262 131-360 (693)
224 2ghs_A AGR_C_1268P; regucalcin 98.6 3E-05 1E-09 63.1 23.3 182 2-194 97-291 (326)
225 2ece_A 462AA long hypothetical 98.6 1.5E-05 5.2E-10 67.0 21.5 163 95-260 144-351 (462)
226 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 5.1E-06 1.8E-10 66.7 17.8 155 2-164 124-299 (314)
227 3nok_A Glutaminyl cyclase; bet 98.6 1.1E-05 3.6E-10 63.1 17.5 172 5-193 64-253 (268)
228 1fwx_A Nitrous oxide reductase 98.5 1.1E-05 3.6E-10 70.2 19.0 231 4-250 99-407 (595)
229 3dr2_A Exported gluconolactona 98.5 3.1E-05 1.1E-09 62.2 20.7 159 81-261 37-224 (305)
230 3c75_H MADH, methylamine dehyd 98.5 4.7E-05 1.6E-09 64.2 21.3 192 2-211 184-406 (426)
231 3mbr_X Glutamine cyclotransfer 98.5 6.4E-05 2.2E-09 58.1 20.1 176 2-193 28-222 (243)
232 3q7m_A Lipoprotein YFGL, BAMB; 98.5 0.00024 8.3E-09 58.6 25.2 152 5-172 52-215 (376)
233 3hrp_A Uncharacterized protein 98.5 1.9E-05 6.6E-10 66.4 18.5 159 89-262 131-299 (409)
234 2ece_A 462AA long hypothetical 98.4 0.00011 3.8E-09 61.8 22.0 195 3-249 146-399 (462)
235 1mda_H Methylamine dehydrogena 98.4 9.7E-05 3.3E-09 61.1 20.7 232 7-262 33-347 (368)
236 1kb0_A Quinohemoprotein alcoho 98.4 0.00028 9.7E-09 63.3 25.3 117 96-214 320-514 (677)
237 1kv9_A Type II quinohemoprotei 98.4 0.00043 1.5E-08 62.0 25.5 159 5-170 116-339 (668)
238 3q7m_A Lipoprotein YFGL, BAMB; 98.3 0.00099 3.4E-08 54.9 26.3 225 5-261 102-337 (376)
239 3hxj_A Pyrrolo-quinoline quino 98.3 0.00016 5.5E-09 58.3 19.4 218 6-263 107-326 (330)
240 2hz6_A Endoplasmic reticulum t 98.3 2.2E-07 7.5E-12 77.2 2.1 154 3-177 46-205 (369)
241 2ad6_A Methanol dehydrogenase 98.2 0.00095 3.2E-08 58.6 24.6 78 94-172 240-343 (571)
242 2iwa_A Glutamine cyclotransfer 98.1 0.0011 3.8E-08 52.1 20.6 155 91-260 23-180 (266)
243 1yiq_A Quinohemoprotein alcoho 98.1 0.00025 8.7E-09 63.7 18.3 76 109-188 454-531 (689)
244 1fwx_A Nitrous oxide reductase 98.1 0.00013 4.5E-09 63.5 15.5 186 4-194 145-407 (595)
245 2fp8_A Strictosidine synthase; 98.1 0.0025 8.7E-08 51.3 27.2 231 2-262 26-314 (322)
246 1w6s_A Methanol dehydrogenase 98.0 0.0045 1.6E-07 54.5 24.0 76 94-171 246-349 (599)
247 3nol_A Glutamine cyclotransfer 97.9 0.0044 1.5E-07 48.3 22.9 164 76-249 73-243 (262)
248 1flg_A Protein (quinoprotein e 97.9 0.0093 3.2E-07 52.4 24.3 61 110-172 291-363 (582)
249 2xe4_A Oligopeptidase B; hydro 97.9 0.0011 3.8E-08 60.1 18.6 73 93-165 225-305 (751)
250 3hxj_A Pyrrolo-quinoline quino 97.7 0.00034 1.2E-08 56.3 11.0 134 100-258 107-241 (330)
251 3nok_A Glutaminyl cyclase; bet 97.6 0.018 6.1E-07 45.0 22.5 143 98-249 103-254 (268)
252 2ad6_A Methanol dehydrogenase 97.5 0.039 1.3E-06 48.3 23.1 114 98-213 311-500 (571)
253 1flg_A Protein (quinoprotein e 97.5 0.0016 5.5E-08 57.3 13.4 64 108-175 464-527 (582)
254 2xe4_A Oligopeptidase B; hydro 97.5 0.0019 6.6E-08 58.6 14.2 112 90-206 175-303 (751)
255 2fp8_A Strictosidine synthase; 97.5 0.025 8.5E-07 45.4 21.1 157 89-261 19-216 (322)
256 1kv9_A Type II quinohemoprotei 97.5 0.0029 9.9E-08 56.6 14.9 63 108-174 436-498 (668)
257 1k3i_A Galactose oxidase precu 97.4 0.0042 1.4E-07 55.4 14.6 25 3-27 251-276 (656)
258 1w6s_A Methanol dehydrogenase 97.4 0.031 1.1E-06 49.3 19.5 154 102-261 123-342 (599)
259 3tc9_A Hypothetical hydrolase; 97.3 0.033 1.1E-06 47.0 18.2 156 90-262 138-302 (430)
260 3qqz_A Putative uncharacterize 97.3 0.041 1.4E-06 42.8 19.6 172 83-262 21-205 (255)
261 1npe_A Nidogen, entactin; glyc 97.1 0.067 2.3E-06 41.5 20.8 157 90-262 37-199 (267)
262 3mbr_X Glutamine cyclotransfer 97.0 0.072 2.5E-06 41.0 24.9 142 99-249 73-223 (243)
263 3tc9_A Hypothetical hydrolase; 97.0 0.12 4.1E-06 43.5 27.1 154 2-163 144-300 (430)
264 3amr_A 3-phytase; beta-propell 97.0 0.11 3.9E-06 42.2 22.8 187 5-206 39-262 (355)
265 3kya_A Putative phosphatase; s 96.9 0.18 6E-06 43.3 19.2 167 90-262 140-342 (496)
266 2p9w_A MAL S 1 allergenic prot 96.8 0.14 4.6E-06 41.4 19.7 168 85-260 9-214 (334)
267 4hw6_A Hypothetical protein, I 96.8 0.2 6.8E-06 42.2 25.1 154 2-163 146-303 (433)
268 1npe_A Nidogen, entactin; glyc 96.7 0.13 4.5E-06 39.8 25.9 191 2-209 43-240 (267)
269 2p9w_A MAL S 1 allergenic prot 96.6 0.2 6.8E-06 40.4 17.1 95 109-206 99-214 (334)
270 2p4o_A Hypothetical protein; p 96.4 0.25 8.7E-06 39.2 25.4 224 2-250 39-277 (306)
271 4hw6_A Hypothetical protein, I 96.2 0.48 1.7E-05 39.8 20.8 157 90-261 140-304 (433)
272 3v65_B Low-density lipoprotein 95.4 0.92 3.1E-05 37.4 20.1 161 88-263 115-279 (386)
273 4a2l_A BT_4663, two-component 95.4 1.5 5.1E-05 39.8 27.6 151 88-253 405-564 (795)
274 3v64_C Agrin; beta propeller, 95.4 0.88 3E-05 36.9 21.8 161 88-263 72-236 (349)
275 1k3i_A Galactose oxidase precu 95.4 0.29 9.8E-06 43.6 13.1 119 93-211 190-327 (656)
276 1n7d_A LDL receptor, low-densi 95.2 0.32 1.1E-05 43.7 12.9 160 89-263 406-573 (699)
277 3pbp_A Nucleoporin NUP82; beta 95.2 1.2 4E-05 37.3 15.1 75 89-164 66-158 (452)
278 3v9f_A Two-component system se 94.9 2.1 7.1E-05 38.8 25.7 153 88-256 494-652 (781)
279 1ijq_A LDL receptor, low-densi 94.9 1.2 4E-05 35.5 21.3 161 89-263 30-197 (316)
280 2p4o_A Hypothetical protein; p 94.8 1.1 3.9E-05 35.3 22.8 162 89-261 32-198 (306)
281 3qqz_A Putative uncharacterize 94.4 1.3 4.5E-05 34.3 21.0 180 2-192 34-240 (255)
282 3sov_A LRP-6, low-density lipo 94.2 1.7 5.8E-05 34.8 19.1 158 91-263 37-199 (318)
283 3m0c_C LDL receptor, low-densi 93.7 4.1 0.00014 37.2 21.6 162 87-263 422-591 (791)
284 3ei3_A DNA damage-binding prot 93.7 5.1 0.00017 38.3 21.6 138 108-262 862-1000(1158)
285 3v9f_A Two-component system se 93.6 4.1 0.00014 36.9 26.3 155 88-259 406-566 (781)
286 3p5b_L Low density lipoprotein 93.5 2.7 9.3E-05 34.8 22.1 163 87-263 110-279 (400)
287 4a2l_A BT_4663, two-component 93.2 4.8 0.00016 36.5 28.4 147 88-254 451-608 (795)
288 3sre_A PON1, serum paraoxonase 92.6 3.6 0.00012 33.5 19.8 162 84-262 45-253 (355)
289 1n7d_A LDL receptor, low-densi 92.5 1.7 5.7E-05 39.1 12.1 82 89-172 540-622 (699)
290 3v65_B Low-density lipoprotein 92.5 3.8 0.00013 33.6 27.0 176 14-204 94-274 (386)
291 2ism_A Putative oxidoreductase 92.3 3.3 0.00011 33.5 12.8 58 135-193 32-96 (352)
292 2ism_A Putative oxidoreductase 92.1 4 0.00014 33.0 17.1 103 88-194 30-153 (352)
293 2be1_A Serine/threonine-protei 91.6 1.4 4.8E-05 35.7 9.6 118 7-174 11-140 (339)
294 3kya_A Putative phosphatase; s 91.3 6.4 0.00022 33.7 27.3 156 2-162 146-339 (496)
295 3a9g_A Putative uncharacterize 91.2 4 0.00014 33.2 12.0 56 135-192 30-93 (354)
296 2xbg_A YCF48-like protein; pho 91.1 5 0.00017 32.0 16.8 70 90-162 251-320 (327)
297 3amr_A 3-phytase; beta-propell 91.0 5.5 0.00019 32.4 19.8 170 77-262 58-264 (355)
298 3das_A Putative oxidoreductase 90.3 6.3 0.00022 32.0 13.4 51 135-185 33-90 (347)
299 2xbg_A YCF48-like protein; pho 90.3 5.9 0.0002 31.6 24.8 156 86-262 160-321 (327)
300 3pbp_A Nucleoporin NUP82; beta 90.2 7.5 0.00025 32.6 18.7 138 16-159 41-207 (452)
301 3das_A Putative oxidoreductase 89.5 7.4 0.00025 31.5 16.1 82 83-164 26-116 (347)
302 3p5b_L Low density lipoprotein 89.2 8.3 0.00028 31.8 27.9 186 8-204 85-274 (400)
303 3v64_C Agrin; beta propeller, 88.9 8 0.00027 31.2 28.8 165 15-193 52-221 (349)
304 3m0c_C LDL receptor, low-densi 88.5 14 0.00049 33.6 25.6 169 14-192 402-575 (791)
305 2g8s_A Glucose/sorbosone dehyd 88.0 9.4 0.00032 30.8 16.5 104 90-195 19-149 (353)
306 1cru_A Protein (soluble quinop 87.6 12 0.0004 31.6 13.3 58 135-192 28-97 (454)
307 3a9g_A Putative uncharacterize 84.9 14 0.00048 29.9 18.1 104 88-194 28-153 (354)
308 3sbq_A Nitrous-oxide reductase 84.7 20 0.00067 31.4 12.4 69 92-164 326-408 (638)
309 3sre_A PON1, serum paraoxonase 84.7 15 0.0005 29.9 20.9 141 14-164 81-252 (355)
310 2xzh_A Clathrin heavy chain 1; 83.9 16 0.00054 29.6 25.0 229 3-262 75-333 (365)
311 2vpj_A Kelch-like protein 12; 83.7 13 0.00046 28.7 22.4 66 99-167 112-187 (301)
312 3s94_A LRP-6, low-density lipo 83.2 24 0.00081 31.1 19.1 160 88-262 39-203 (619)
313 1ijq_A LDL receptor, low-densi 82.0 17 0.00058 28.6 27.0 167 16-193 10-182 (316)
314 4a0p_A LRP6, LRP-6, low-densit 81.1 29 0.00098 30.6 21.1 158 89-263 37-199 (628)
315 4gq2_M Nucleoporin NUP120; bet 80.8 8.3 0.00028 36.0 9.4 37 90-126 237-273 (950)
316 4gq2_M Nucleoporin NUP120; bet 79.6 3 0.0001 38.9 6.0 37 135-171 237-273 (950)
317 1zgk_A Kelch-like ECH-associat 79.2 20 0.0007 27.9 14.2 66 99-167 121-196 (308)
318 2be1_A Serine/threonine-protei 78.6 15 0.0005 29.7 9.1 66 101-168 11-80 (339)
319 1tl2_A L10, protein (tachylect 76.2 5.2 0.00018 30.3 5.4 69 90-163 42-115 (236)
320 1xi4_A Clathrin heavy chain; a 74.7 69 0.0024 31.6 18.0 105 3-120 74-189 (1630)
321 3ei3_A DNA damage-binding prot 74.0 64 0.0022 30.9 23.7 73 88-162 553-634 (1158)
322 1zgk_A Kelch-like ECH-associat 73.2 30 0.001 26.8 14.3 66 99-167 70-149 (308)
323 4fhn_B Nucleoporin NUP120; pro 72.6 3 0.0001 39.7 4.1 38 135-172 239-276 (1139)
324 2uvk_A YJHT; unknown function, 70.0 29 0.001 27.5 9.1 42 110-154 86-128 (357)
325 2woz_A Kelch repeat and BTB do 69.8 37 0.0013 26.4 12.2 66 99-167 109-187 (318)
326 3f7f_A Nucleoporin NUP120; nuc 69.5 8 0.00027 34.7 5.8 31 143-173 229-259 (729)
327 4asc_A Kelch repeat and BTB do 68.3 40 0.0014 26.2 19.2 66 99-167 98-177 (315)
328 1bpo_A Protein (clathrin); cla 67.5 57 0.0019 27.6 28.2 229 3-262 74-332 (494)
329 1cru_A Protein (soluble quinop 67.2 55 0.0019 27.4 21.7 105 89-194 27-162 (454)
330 3f7f_A Nucleoporin NUP120; nuc 67.0 9 0.00031 34.4 5.6 35 91-127 224-258 (729)
331 1suu_A DNA gyrase subunit A; t 64.7 51 0.0017 26.1 18.2 155 4-164 6-181 (312)
332 4fhn_B Nucleoporin NUP120; pro 64.6 5.3 0.00018 38.1 4.0 37 90-126 239-275 (1139)
333 3ii7_A Kelch-like protein 7; p 64.2 47 0.0016 25.6 23.6 66 99-167 101-181 (306)
334 2xzh_A Clathrin heavy chain 1; 62.8 60 0.0021 26.3 16.0 137 108-262 47-190 (365)
335 2xn4_A Kelch-like protein 2; s 62.7 50 0.0017 25.4 22.8 66 99-167 108-185 (302)
336 3no0_A DNA gyrase subunit A; D 60.6 57 0.0019 25.3 13.2 151 5-163 79-245 (276)
337 2vpj_A Kelch-like protein 12; 59.8 56 0.0019 25.0 21.0 66 99-167 159-234 (301)
338 1tl2_A L10, protein (tachylect 58.9 56 0.0019 24.7 13.1 140 4-158 2-157 (236)
339 3s94_A LRP-6, low-density lipo 55.0 1.1E+02 0.0038 26.8 21.3 157 89-263 349-512 (619)
340 3s25_A Hypothetical 7-bladed b 53.8 78 0.0027 24.8 11.3 87 95-193 59-163 (302)
341 2g8s_A Glucose/sorbosone dehyd 53.5 85 0.0029 25.1 15.6 69 89-157 271-347 (353)
342 3zwu_A Alkaline phosphatase PH 50.9 70 0.0024 28.0 8.3 58 92-151 479-548 (592)
343 2xn4_A Kelch-like protein 2; s 50.6 82 0.0028 24.1 19.2 66 99-167 155-232 (302)
344 3sov_A LRP-6, low-density lipo 50.3 91 0.0031 24.5 23.9 76 86-164 119-197 (318)
345 3sbq_A Nitrous-oxide reductase 50.3 1.3E+02 0.0045 26.4 9.9 99 17-119 299-408 (638)
346 2zwa_A Leucine carboxyl methyl 47.8 1.5E+02 0.0052 26.4 16.2 158 98-262 396-578 (695)
347 3uc1_A DNA gyrase subunit A; D 47.4 1.1E+02 0.0036 24.5 12.7 110 5-118 108-227 (327)
348 3kvp_A Uncharacterized protein 41.9 28 0.00097 20.4 3.0 20 242-262 29-48 (72)
349 4a9v_A PHOX; hydrolase, beta-p 40.7 1.8E+02 0.0063 25.4 9.2 60 90-151 477-548 (592)
350 4asc_A Kelch repeat and BTB do 40.0 1.3E+02 0.0043 23.2 15.9 66 98-166 44-128 (315)
351 1zi0_A DNA gyrase subunit A; b 38.6 1.4E+02 0.0048 23.4 19.6 154 4-163 1-175 (307)
352 1xi4_A Clathrin heavy chain; a 37.3 2.6E+02 0.009 27.8 10.3 137 108-262 46-189 (1630)
353 3ii7_A Kelch-like protein 7; p 36.4 1.4E+02 0.0049 22.7 19.6 66 99-167 149-228 (306)
354 1bpo_A Protein (clathrin); cla 35.6 2E+02 0.007 24.4 14.9 137 108-262 46-189 (494)
355 2wg3_C Hedgehog-interacting pr 35.4 2E+02 0.0068 24.2 14.9 106 90-196 15-159 (463)
356 2woz_A Kelch repeat and BTB do 30.4 1.9E+02 0.0063 22.3 16.5 68 97-167 54-139 (318)
357 2zwa_A Leucine carboxyl methyl 29.1 3.1E+02 0.01 24.4 12.5 68 98-166 499-579 (695)
358 3ott_A Two-component system se 25.7 3.5E+02 0.012 24.0 18.5 75 90-166 473-547 (758)
359 3l6v_A GYRA, DNA gyrase subuni 25.6 2.7E+02 0.0092 22.6 19.6 155 3-163 4-179 (370)
360 1ukf_A Avirulence protein AVRP 23.1 89 0.0031 22.6 3.7 35 133-167 118-153 (188)
361 3s25_A Hypothetical 7-bladed b 21.9 2.8E+02 0.0097 21.5 12.4 88 95-193 110-202 (302)
362 1wp5_A Topoisomerase IV; broke 20.4 3.2E+02 0.011 21.5 15.1 156 4-162 104-275 (323)
363 4a0p_A LRP6, LRP-6, low-densit 20.0 4.4E+02 0.015 23.0 27.9 167 14-193 13-184 (628)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-35 Score=242.13 Aligned_cols=235 Identities=23% Similarity=0.382 Sum_probs=188.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
||||+++|+||+.|++|++||++++..+..+. +..++..+.|++.+..++.++. +..+.+|++ .+++.
T Consensus 21 fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-----d~~i~vwd~------~~~~~ 89 (304)
T 2ynn_A 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-----DFRIRVFNY------NTGEK 89 (304)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-----TSEEEEEET------TTCCE
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC-----CCEEEEEEC------CCCcE
Confidence 89999999999999999999999999888887 5677999999997766555442 345556654 45678
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~i 159 (268)
+..+.+|.+.|+++.|+|++++|++|+.|++|++||++++...... ..+|...|.+++|+| ++..|++++.|++|++
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i 167 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT--FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE--ECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh--hcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 8889999999999999999999999999999999999887543322 247999999999998 6789999999999999
Q ss_pred EECCCcceeeeee--cCCceeEEEEccCCC-eEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 160 WDARTLELIKTYV--TERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 160 wd~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
||+++......+. +...+..+.++|..+ ..+++++.+ ..+..||.+.+.. +..+.+|...|.++
T Consensus 168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D-~~i~iWd~~~~~~------------~~~~~~h~~~v~~~ 234 (304)
T 2ynn_A 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD-LTIKIWDYQTKSC------------VATLEGHMSNVSFA 234 (304)
T ss_dssp EETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT-SEEEEEETTTTEE------------EEEEECCSSCEEEE
T ss_pred EECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC-CeEEEEeCCCCcc------------ceeeCCCCCCEEEE
Confidence 9998876554443 335678888887432 344444444 4567777766543 23456899999999
Q ss_pred EECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 237 AFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+|+|++++|+||+.||+|++|+.+..
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999998753
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.1e-35 Score=242.80 Aligned_cols=228 Identities=20% Similarity=0.332 Sum_probs=186.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc----EEEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA----QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
|+|++++|++|+.|++|++||+.+.. ....+ .+...+.++.+.+++.++..+.++ .+.+|++ .
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~------~i~~wd~------~ 172 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT------TCALWDI------E 172 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTS------CEEEEET------T
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCC------cEEEEEC------C
Confidence 89999999999999999999998753 23333 366778899999888866665544 4455554 3
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
+++++..+.+|.+.|+++.|+|++++|++|+.|+.|++||+++++....+. +|...|++++|+|++.+|++++.|++
T Consensus 173 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc---CCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence 456788899999999999999999999999999999999999987766553 79999999999999999999999999
Q ss_pred EEEEECCCcceeeeeecC---CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 157 AKLWDARTLELIKTYVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
|++||+++++.+..+.+. ..+.+++|+|++..+++++. + ..+..||...+.. +..+.+|...|
T Consensus 250 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d-~~i~vwd~~~~~~------------~~~~~~h~~~v 315 (340)
T 1got_B 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-D-FNCNVWDALKADR------------AGVLAGHDNRV 315 (340)
T ss_dssp EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-T-SEEEEEETTTCCE------------EEEEECCSSCE
T ss_pred EEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC-C-CeEEEEEcccCcE------------eeEeecCCCcE
Confidence 999999998777666543 35889999998776665543 3 3566777654432 23456899999
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEe
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~ 258 (268)
++++|+|++++||||+.||+|+||+
T Consensus 316 ~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 316 SCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999995
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=240.39 Aligned_cols=231 Identities=22% Similarity=0.299 Sum_probs=191.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|++++++|+|.|++|++||+.+++.+..+. +...+..++|+|.+..+++++. ++.+.++.+ ..++.
T Consensus 88 ~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----dg~v~i~~~------~~~~~ 156 (321)
T 3ow8_A 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----VGKVNIFGV------ESGKK 156 (321)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-----TSEEEEEET------TTCSE
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCcEEEEEc------CCCce
Confidence 78999999999999999999999999888876 4566888999998777666542 334455543 34566
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
...+..|...|.+++|+|++++|++|+.|+.|++||+++++.+..+. +|..+|.+++|+|++.+|++++.|++|++|
T Consensus 157 ~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~spd~~~l~s~s~dg~i~iw 233 (321)
T 3ow8_A 157 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE---GHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233 (321)
T ss_dssp EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc---ccCCceeEEEEcCCCCEEEEEcCCCeEEEE
Confidence 77788999999999999999999999999999999999988776553 699999999999999999999999999999
Q ss_pred ECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 161 DARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 161 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
|+++++.+..+. +...+.+++|+|++..+++++. + ..+..||.+.+.. +..+.+|...|.+++|+
T Consensus 234 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-D-~~v~iwd~~~~~~------------~~~~~~h~~~v~~v~~s 299 (321)
T 3ow8_A 234 DVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS-D-KSVKVWDVGTRTC------------VHTFFDHQDQVWGVKYN 299 (321)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-T-SCEEEEETTTTEE------------EEEECCCSSCEEEEEEC
T ss_pred ECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC-C-CcEEEEeCCCCEE------------EEEEcCCCCcEEEEEEC
Confidence 999988777664 4567899999998776665543 3 3466777665543 23345788999999999
Q ss_pred CCCCeEEeeeCCCeEEEEeeC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~ 260 (268)
|++++|++|+.||+|+||+++
T Consensus 300 ~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 300 GNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSSEEEEEETTCCEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999874
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=242.71 Aligned_cols=234 Identities=16% Similarity=0.216 Sum_probs=184.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE-----ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF-----NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
|+||+ .|++|+.||+|++||+++++..... .|...|.+++|+|.+..++.++. ++.+.+|++ .
T Consensus 90 ~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~-----d~~i~iwd~------~ 157 (344)
T 4gqb_B 90 WVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK-----DICIKVWDL------A 157 (344)
T ss_dssp EETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEET------T
T ss_pred EeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC-----CCeEEEEEC------C
Confidence 78885 6889999999999999988654432 36788999999998776655442 335556654 4
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC-CCEEEEeeCC
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLD 154 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d 154 (268)
+++++..+.+|.+.|+++.|+|++. .|++++.|++|++||+++++....+.. ..|...+.+++|+|+ +.+|++++.|
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETT
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccC
Confidence 5678889999999999999999985 789999999999999999987766542 245667999999985 5678899999
Q ss_pred CcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 155 KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
++|++||+++++++..+. +...+.+++|+|++..++++++.++ .+..||.+.+... .+.+|.+.|
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~-~i~vwd~~~~~~~-------------~~~~H~~~V 302 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC-SLAVLDSSLSELF-------------RSQAHRDFV 302 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS-CEEEECTTCCEEE-------------EECCCSSCE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCcEE-------------EEcCCCCCE
Confidence 999999999999888775 5668999999998766666655554 4677887765431 235799999
Q ss_pred EEEEECCCCC-eEEeeeCCCeEEEEeeCCC
Q 024407 234 NALAFNPDGK-SFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 234 ~~~~~sp~~~-~lasgs~Dg~i~i~~~~~~ 262 (268)
++++|+|+++ .|+|||.||+|++|.++.+
T Consensus 303 ~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 303 RDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 9999999986 4779999999999999866
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.7e-34 Score=239.25 Aligned_cols=247 Identities=21% Similarity=0.318 Sum_probs=193.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+||+++|+|||.|++|++||..+++....+. +...+..+.|+|.+..++.++. ++.+.++.+...........
T Consensus 72 ~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~-----d~~i~v~~~~~~~~~~~~~~ 146 (354)
T 2pbi_B 72 WCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL-----DNKCSVYPLTFDKNENMAAK 146 (354)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST-----TSEEEEEECCCCTTCCSGGG
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC-----CCCEEEEEEecccccccccc
Confidence 89999999999999999999999988877776 4567899999998776665542 34455555543222222344
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC--CCCEEEEeeCCCcEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAK 158 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~ 158 (268)
...+.+|...|.++.|+|+++.|++++.|++|++||+++++.+..+. +|...|.+++++| ++.+|++++.|++|+
T Consensus 147 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH---GHGADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp CEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred ceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc---CCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 56678999999999999999999999999999999999998776654 7999999999987 568999999999999
Q ss_pred EEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee--------------------------
Q 024407 159 LWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE-------------------------- 211 (268)
Q Consensus 159 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------------------- 211 (268)
+||+++++++..+. +...+.+++++|.+..+++++.+ ..+..||.+.+...
T Consensus 224 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D--~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD--ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT--SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred EEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCC--CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 99999998887764 56689999999987766655433 34566665433211
Q ss_pred ------eEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEe
Q 024407 212 ------AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 212 ------~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~ 258 (268)
.++|+...+..+..+.+|.+.|++++|+|++++||||+.||+|+||.
T Consensus 302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 12333333344456778999999999999999999999999999994
No 6
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.6e-34 Score=235.98 Aligned_cols=238 Identities=22% Similarity=0.327 Sum_probs=188.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+||+++|+|||.|++||+||+++++.+..+. +..++.++++++.+..++.++. ++.+.+|++. +.+
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----D~~i~vwd~~-------~~~ 140 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR-----DKTIKVWTIK-------GQC 140 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET-----TSCEEEEETT-------SCE
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEECC-------CCe
Confidence 89999999999999999999999999888776 6788999999997766555442 3455666542 356
Q ss_pred EEEEecCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 81 VLILKGPQGRINRAVWGPL------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
+..+.+|...|.++.|.|. +..+++++.|+.|++||+++.+....+ .+|...|.+++|+|++.+|++++.|
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~sp~g~~l~s~~~d 217 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKD 217 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE---CCCCSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee---cCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 7788999999999999985 448999999999999999987765544 3799999999999999999999999
Q ss_pred CcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 155 KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
++|++||+++++.+..+.....+..++|+|++..++.+. .+. +..|+.........+ ..+.......|...+.
T Consensus 218 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~-~~~--i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~v~ 290 (319)
T 3frx_A 218 GEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT-ATG--IKVFSLDPQYLVDDL----RPEFAGYSKAAEPHAV 290 (319)
T ss_dssp CEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE-TTE--EEEEEETTEEEEEEE----CCCCTTCCGGGCCCEE
T ss_pred CeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc-CCC--cEEEEeCcCeeeecc----CccccccccCcCccee
Confidence 999999999999888887778899999999876555443 333 444444332221111 0111112234667899
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+++|+|||++|++|+.||.|+||++..
T Consensus 291 ~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 291 SLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred EEEECCCCCEEEEeecCceEEEEEEee
Confidence 999999999999999999999999864
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.3e-35 Score=247.27 Aligned_cols=234 Identities=22% Similarity=0.364 Sum_probs=192.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|++++|+|||.|++|++||+.+++....+. |..++.++.|++++.+++.++. ++.+.+|++ .++++
T Consensus 116 ~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~-----D~~i~iwd~------~~~~~ 184 (410)
T 1vyh_C 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA-----DMTIKLWDF------QGFEC 184 (410)
T ss_dssp ECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET-----TSCCCEEET------TSSCE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEeC------CCCce
Confidence 89999999999999999999999998888776 6778999999997766555442 234455543 34567
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+..+.+|...|+++.|+|++++|++|+.|++|++||+++++.+..+. +|...|.++.+++++.++++++.|++|++|
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~~~~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT---GHREWVRMVRPNQDGTLIASCSNDQTVRVW 261 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---CCCccEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 77889999999999999999999999999999999999998776553 799999999999999999999999999999
Q ss_pred ECCCcceeeeee-cCCceeEEEEccCC-------------------CeEEEeecCCCceEEEeccCCCeeeeEeeehhhh
Q 024407 161 DARTLELIKTYV-TERPVNAVTMSPLL-------------------DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220 (268)
Q Consensus 161 d~~~~~~~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 220 (268)
|++++++...+. +...+.++.|+|.. ...+++++.+ ..+..||.+.+...
T Consensus 262 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D-~~i~iwd~~~~~~~--------- 331 (410)
T 1vyh_C 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-KTIKMWDVSTGMCL--------- 331 (410)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-SEEEEEETTTTEEE---------
T ss_pred ECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC-CeEEEEECCCCceE---------
Confidence 999988877663 45678999999863 2234444444 35677777665432
Q ss_pred hhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 221 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 221 ~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+.+|...|++++|+|++++|++|+.||+|++|+++..
T Consensus 332 ---~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 332 ---MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp ---EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred ---EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 334679999999999999999999999999999998754
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=244.17 Aligned_cols=236 Identities=15% Similarity=0.200 Sum_probs=182.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecC------------CCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeee
Q 024407 2 FQANSMTLITGSADQTAKLWNVE------------TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI 69 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (268)
|||||++|+++| |+++|+||.. .+......++...+..++|+++..++.++.++ .+++|++
T Consensus 38 fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg------~v~lWd~ 110 (344)
T 4gqb_B 38 YRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSG------AVELWEL 110 (344)
T ss_dssp ECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTS------EEEEEEE
T ss_pred ECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCC------EEEEEec
Confidence 899999999888 7899999732 11223344566779999999988777665544 5666665
Q ss_pred eeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EE
Q 024407 70 ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HF 148 (268)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l 148 (268)
.... ........+.+|.+.|++++|+|+|++|++|+.|++|++||+++++.+..+. +|...|.+++|++++. +|
T Consensus 111 ~~~~--~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~---~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 111 DENE--TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR---AHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp CTTS--SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECSSCTTEE
T ss_pred cCCC--ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---CcCCceEEEEecCCCCCce
Confidence 4321 1111223456999999999999999999999999999999999998776654 7999999999999885 68
Q ss_pred EEeeCCCcEEEEECCCcceeeeee---cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc
Q 024407 149 LTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225 (268)
Q Consensus 149 ~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 225 (268)
++++.|++|++||+++++.+..+. ....+.++.++|.+..++++++.+ ..+..||.+.+. .+..
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d-g~v~~wd~~~~~------------~~~~ 252 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN-GTVSLVDTKSTS------------CVLS 252 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT-SEEEEEESCC--------------CCEE
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC-CcEEEEECCCCc------------EEEE
Confidence 899999999999999988877653 234578899999877777665554 356677766543 2344
Q ss_pred ccccccceEEEEECCCC-CeEEeeeCCCeEEEEeeCCC
Q 024407 226 VKGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 226 ~~~h~~~v~~~~~sp~~-~~lasgs~Dg~i~i~~~~~~ 262 (268)
+.+|...|++++|+|++ ++||||+.|++|+||+++..
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 67899999999999998 67999999999999988754
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-34 Score=245.71 Aligned_cols=231 Identities=22% Similarity=0.297 Sum_probs=190.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|++++|+|||.|++|++||+.+++.+..+. +...+.++.|+|.+..++.++. ++.+.+|++ .++.+
T Consensus 158 ~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~-----D~~i~~wd~------~~~~~ 226 (410)
T 1vyh_C 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR-----DKTIKMWEV------QTGYC 226 (410)
T ss_dssp ECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET-----TSEEEEEET------TTCCE
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEEC------CCCcE
Confidence 89999999999999999999999998887765 6778999999997765554432 345566654 34567
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC----------------
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD---------------- 144 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~---------------- 144 (268)
+..+.+|...|.++.|+|++++|++|+.|+.|++||+++++....+. +|...|.+++|+|+
T Consensus 227 ~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 303 (410)
T 1vyh_C 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKK 303 (410)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec---CCCceEEEEEEcCcccccchhhhccccccc
Confidence 88899999999999999999999999999999999999987766553 68999999999986
Q ss_pred ----CCEEEEeeCCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhh
Q 024407 145 ----GSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219 (268)
Q Consensus 145 ----~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 219 (268)
+.+|++++.|++|++||+++++++..+. +...+.++.++|.+..+++++. + ..+..||.+.+..
T Consensus 304 ~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D-~~i~vwd~~~~~~--------- 372 (410)
T 1vyh_C 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-D-KTLRVWDYKNKRC--------- 372 (410)
T ss_dssp ----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-T-TEEEEECCTTSCC---------
T ss_pred cCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCce---------
Confidence 6689999999999999999998887765 5567899999998777665543 3 3566777654432
Q ss_pred hhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 220 ~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+..+.+|...|++++|+|++++||||+.||+|+||+++
T Consensus 373 ---~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 373 ---MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ---CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ---EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 33456799999999999999999999999999999864
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.8e-34 Score=240.53 Aligned_cols=249 Identities=20% Similarity=0.246 Sum_probs=185.8
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEc-CCCcccccceE--------------
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITT-DPFMELNSAIH-------------- 65 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------- 65 (268)
|+|++++|+|||.|++|++||+.+++....+. +...+..++|+|.+..++.++ ++...++....
T Consensus 74 ~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~ 153 (380)
T 3iz6_a 74 WTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVL 153 (380)
T ss_dssp ECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBC
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeec
Confidence 89999999999999999999999998888776 466788999999776655443 22222211100
Q ss_pred -------------------e-----eeeeeCCCCCCCceEEEE-----ecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEE
Q 024407 66 -------------------V-----KRIARDPADQGGESVLIL-----KGPQGRINRAVWGP-LNRTIISAGEDAIVRIW 115 (268)
Q Consensus 66 -------------------~-----~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iw 115 (268)
+ ....+.+...+++.+..+ .+|...|.++.|+| +++.|++|+.|+.|++|
T Consensus 154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~w 233 (380)
T 3iz6_a 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233 (380)
T ss_dssp CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEE
T ss_pred cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEE
Confidence 0 000011123344555555 57899999999987 78899999999999999
Q ss_pred ECCCC-ceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecC--------CceeEEEEccCC
Q 024407 116 DTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------RPVNAVTMSPLL 186 (268)
Q Consensus 116 d~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~ 186 (268)
|++.. +.+..+ .+|...|.+++|+|++.+|++++.|++|++||+++++.+..+... ..+.+++|+|.+
T Consensus 234 d~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 310 (380)
T 3iz6_a 234 DLRITSRAVRTY---HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG 310 (380)
T ss_dssp ETTTTCCCCEEE---CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred ECCCCCcceEEE---CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC
Confidence 99843 444333 479999999999999999999999999999999998877665422 136889999988
Q ss_pred CeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 187 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 187 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
..+++++. .+.+..||...+.....+. ....+|...|++++|+|+|++|+||+.||+|+||++.+..
T Consensus 311 ~~l~~g~~--dg~i~vwd~~~~~~~~~~~--------~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 311 RLLFAGYS--NGDCYVWDTLLAEMVLNLG--------TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SEEEEECT--TSCEEEEETTTCCEEEEEC--------CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CEEEEEEC--CCCEEEEECCCCceEEEEe--------cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 76665443 3456778776554332211 1125788999999999999999999999999999998654
No 11
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=234.52 Aligned_cols=260 Identities=37% Similarity=0.651 Sum_probs=206.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC-----
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ----- 76 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (268)
|+|++++|++++.|++|++||+.+++.+..+.+..++..+.|++.+..++++........+.+.+|++.......
T Consensus 82 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 82 VDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 899999999999999999999999999999999999999999998877776654433333566666665432111
Q ss_pred CCceEEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeecccccCcccceEEEEEcCCCCEEEEeeC
Q 024407 77 GGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 77 ~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
...++..+.+|.+ .+.++.|+|++++|++++.||.|++||+++ .+....+. .|...|.+++|+|++.+|++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID---LHEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE---CCSSCEEEEEECTTSSEEEEEET
T ss_pred ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe---cCCCceeEEEECCCCCEEEEecC
Confidence 1234455667776 999999999999999999999999999998 55544443 58899999999999999999999
Q ss_pred CCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 154 DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
|+.|++||+++++.+..+.....+..+.++|.+..+++++..+...+..++...+.....+|+....+.+..+.+|...|
T Consensus 239 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v 318 (369)
T 3zwl_B 239 DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL 318 (369)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCE
T ss_pred CceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcE
Confidence 99999999999999888888888999999999988888877766555555555555556677665555566678899999
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeCCCcc
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 264 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~ 264 (268)
++++|+|++++|++|+.||.|+||+++...+
T Consensus 319 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 319 NTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 9999999999999999999999999987643
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-33 Score=251.32 Aligned_cols=247 Identities=19% Similarity=0.217 Sum_probs=190.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc--EEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA--QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
||||+++||||+.|++||+||+.+++ ....+. +..++..++|+|.++.+++++.... ....+.+|+ .+
T Consensus 67 ~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~-~~~~v~~wd--------~~ 137 (611)
T 1nr0_A 67 TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-RFGHVFLFD--------TG 137 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS-CSEEEEETT--------TC
T ss_pred ECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC-ceeEEEEee--------CC
Confidence 89999999999999999999997544 333443 6788999999998776655543210 011222222 23
Q ss_pred ceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.....+.+|.+.|+++.|+|+++ .|++|+.|++|++||.++++....+ .+|...|.+++|+|++.+|++++.|++|
T Consensus 138 ~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l---~~H~~~V~~v~fspdg~~las~s~D~~i 214 (611)
T 1nr0_A 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF---GEHTKFVHSVRYNPDGSLFASTGGDGTI 214 (611)
T ss_dssp CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee---ccccCceEEEEECCCCCEEEEEECCCcE
Confidence 34455789999999999999987 6999999999999999887765554 4799999999999999999999999999
Q ss_pred EEEECCCcceeeee--------ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEe---------------
Q 024407 158 KLWDARTLELIKTY--------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF--------------- 214 (268)
Q Consensus 158 ~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------------- 214 (268)
++||+++++.+..+ .+...+.+++|+|++..++.++. + ..+..||...+.....+
T Consensus 215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~-D-~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-D-KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-T-SEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC-C-CeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 99999998877766 35668999999998776665543 3 35778887766543221
Q ss_pred ----------------eehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 215 ----------------FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 215 ----------------~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|+.........+.+|...|++++|+|++++|++|+.|++|++|+++..
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 221112223345689999999999999999999999999999998754
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-32 Score=224.71 Aligned_cols=243 Identities=24% Similarity=0.377 Sum_probs=195.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|++++|++|+.|++|++||+.+++....+. +...+..++|+|.+..++.++. ++.+.+|++ .+++.
T Consensus 31 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~------~~~~~ 99 (312)
T 4ery_A 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD-----DKTLKIWDV------SSGKC 99 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEET------TTCCE
T ss_pred ECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC-----CCEEEEEEC------CCCcE
Confidence 89999999999999999999999998887775 5678999999998776665542 345556654 34567
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+..+.+|...|.++.|+|++++|++|+.|+.|++||+++++.+..+. .|..+|.+++|+|++.++++++.|+.|++|
T Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 176 (312)
T 4ery_A 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176 (312)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec---CCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 88899999999999999999999999999999999999988766553 688999999999999999999999999999
Q ss_pred ECCCcceeeeeec--CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee---------------------------
Q 024407 161 DARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE--------------------------- 211 (268)
Q Consensus 161 d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------------------------- 211 (268)
|+++++.+..+.. ..++..+.++|++..+++++.+ ..+..||.+.+...
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD--NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp ETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT--TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred ECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC--CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 9999887776532 3467889999988776665443 34556665433321
Q ss_pred ------eEeeehhhhhhhccccccccceEEEEECCCCCeEEeee--CCCeEEEEeeC
Q 024407 212 ------AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG--EDGYVRLHHFD 260 (268)
Q Consensus 212 ------~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs--~Dg~i~i~~~~ 260 (268)
.++|+....+.+..+.+|...|.+++|+|++++|++++ .|++|++|+.+
T Consensus 255 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 12344333444556788999999999999999999987 69999999865
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=231.89 Aligned_cols=251 Identities=14% Similarity=0.246 Sum_probs=183.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEE--E--ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFT--F--NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
||||+++|+|||.|++|++||+++++.... + .|...+..++|+|.+..++.++. +..+.+|+... ..
T Consensus 24 ~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~-----D~~v~iw~~~~----~~ 94 (345)
T 3fm0_A 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF-----DATTCIWKKNQ----DD 94 (345)
T ss_dssp ECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET-----TSCEEEEEECC----C-
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC-----CCcEEEEEccC----CC
Confidence 899999999999999999999988764332 2 26678999999997766555432 33455555432 12
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.+.+..+.+|..+|+++.|+|++++|++|+.|+.|++||++++.....+....+|...|.+++|+|++.+|++++.|++|
T Consensus 95 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i 174 (345)
T 3fm0_A 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCE
T ss_pred eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcE
Confidence 24567789999999999999999999999999999999998865443333345799999999999999999999999999
Q ss_pred EEEECCCcce--eeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCC--------------------------
Q 024407 158 KLWDARTLEL--IKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG-------------------------- 208 (268)
Q Consensus 158 ~iwd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-------------------------- 208 (268)
++||.+.++. ...+ .+...+.+++|+|++..+++++.+. .+..|+....
T Consensus 175 ~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~--~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 252 (345)
T 3fm0_A 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR--TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252 (345)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS
T ss_pred EEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC--eEEEeccccCCCCccceeeccCCccceeEEecCCCC
Confidence 9999987643 2333 3566899999999877666554433 3445542100
Q ss_pred -ee-------------------eeEeeehhhhh---------hhccccccccceEEEEECCCC-CeEEeeeCCCeEEEEe
Q 024407 209 -KF-------------------EAKFFDKILQE---------EIGGVKGHFGPINALAFNPDG-KSFSSGGEDGYVRLHH 258 (268)
Q Consensus 209 -~~-------------------~~~~~~~~~~~---------~~~~~~~h~~~v~~~~~sp~~-~~lasgs~Dg~i~i~~ 258 (268)
.+ ..++|+..... ......+|...|++++|+|++ .+||||+.||+|++|+
T Consensus 253 ~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 253 RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 00 01122211110 001235788999999999998 5899999999999999
Q ss_pred eCCCc
Q 024407 259 FDPDY 263 (268)
Q Consensus 259 ~~~~~ 263 (268)
++.+.
T Consensus 333 ~~~~~ 337 (345)
T 3fm0_A 333 YQRPE 337 (345)
T ss_dssp ECC--
T ss_pred ecCCC
Confidence 98763
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-32 Score=226.94 Aligned_cols=238 Identities=21% Similarity=0.299 Sum_probs=188.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+||+++|+|||.|++|++||+.+++.+..+. +...+..++|+|.+..++.++. ++.+.+|.+... ......
T Consensus 63 ~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----d~~v~iw~~~~~--~~~~~~ 135 (340)
T 1got_B 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-----DNICSIYNLKTR--EGNVRV 135 (340)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET-----TCEEEEEETTTC--SBSCEE
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC-----CCeEEEEECccC--CCccee
Confidence 89999999999999999999999999888776 4667899999998776555442 344555554321 112245
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
...+.+|.+.|.++.|+|++. +++++.|+.|++||+++++.+..+. +|...|.+++|+|++.++++++.|++|++|
T Consensus 136 ~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~sg~~d~~v~~w 211 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT---GHTGDVMSLSLAPDTRLFVSGACDASAKLW 211 (340)
T ss_dssp EEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc---CCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 567889999999999998765 8899999999999999988766553 799999999999999999999999999999
Q ss_pred ECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 161 DARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 161 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
|+++++++..+. +...+.+++++|++..+++++ .+ ..+..||.+.+.....+ . ...+...|++++|+
T Consensus 212 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d-~~v~iwd~~~~~~~~~~-~---------~~~~~~~v~~~~~s 279 (340)
T 1got_B 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DD-ATCRLFDLRADQELMTY-S---------HDNIICGITSVSFS 279 (340)
T ss_dssp ETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TT-SCEEEEETTTTEEEEEE-C---------CTTCCSCEEEEEEC
T ss_pred ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CC-CcEEEEECCCCcEEEEE-c---------cCCcccceEEEEEC
Confidence 999998877764 456799999999877665554 33 35677887765432221 0 11234579999999
Q ss_pred CCCCeEEeeeCCCeEEEEeeCCC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|++++|++|+.||.|++|++...
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCCEEEEECCCCeEEEEEcccC
Confidence 99999999999999999998654
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.5e-33 Score=233.68 Aligned_cols=236 Identities=17% Similarity=0.223 Sum_probs=178.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEE-----EEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLF-----TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
|+||+. +++++.|++|++||+.+++... ...|..+|.+++|+|.+..++.++. ++.+.+|++ .
T Consensus 102 ~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-----dg~v~iwd~------~ 169 (357)
T 4g56_B 102 WVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-----DFSVKVWDL------S 169 (357)
T ss_dssp EETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-----TSCEEEEET------T
T ss_pred EcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-----CCeEEEEEC------C
Confidence 789875 6678999999999998876532 2246778999999998766555432 334555543 4
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC-CEEEEeeCC
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLD 154 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d 154 (268)
+++.+..+++|...|+++.|+|+++ .+++++.|+.|++||+++++....+. ...|...+++++|+|++ .+|++++.|
T Consensus 170 ~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~~la~g~~d 248 (357)
T 4g56_B 170 QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID-FCASDTIPTSVTWHPEKDDTFACGDET 248 (357)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC-CTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee-eccccccccchhhhhcccceEEEeecc
Confidence 5677888999999999999999985 78999999999999999987665443 23577889999999974 578899999
Q ss_pred CcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 155 KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
+.|++||+++++.+..+. +...+.+++|+|.+..++++++.++ .+..||.+.+.... ..+|.+.|
T Consensus 249 ~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~-~i~iwd~~~~~~~~-------------~~~H~~~V 314 (357)
T 4g56_B 249 GNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC-TVAVLDADFSEVFR-------------DLSHRDFV 314 (357)
T ss_dssp SCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS-CEEEECTTSCEEEE-------------ECCCSSCE
T ss_pred cceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC-EEEEEECCCCcEeE-------------ECCCCCCE
Confidence 999999999998877765 4567899999998776666655554 46778877665321 23689999
Q ss_pred EEEEECC-CCCeEEeeeCCCeEEEEeeCCCcc
Q 024407 234 NALAFNP-DGKSFSSGGEDGYVRLHHFDPDYF 264 (268)
Q Consensus 234 ~~~~~sp-~~~~lasgs~Dg~i~i~~~~~~~~ 264 (268)
++++|+| ++++|||||.||+|++|+++.+..
T Consensus 315 ~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 9999999 789999999999999999987643
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.4e-33 Score=228.91 Aligned_cols=230 Identities=23% Similarity=0.334 Sum_probs=184.7
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEE--EEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLF--TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
++.+|+|||.|++||+||+.+++... .+. +...+.++++++...+++.++ .++.+.+|++ .+++++
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s-----~D~~i~lWd~------~~~~~~ 115 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSS-----LDAHIRLWDL------ENGKQI 115 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEE-----TTSEEEEEET------TTTEEE
T ss_pred CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEe-----CCCcEEEEEC------CCCCEE
Confidence 46789999999999999998776433 333 567789999998776655543 2445566654 355678
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
..+.+|...+.++.|+|++++|++++.|+.|++||+++++....+. .|...+.+++|+|++.+|++++.|+.|++||
T Consensus 116 ~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~---~~~~~v~~~~~spdg~~lasg~~dg~i~iwd 192 (321)
T 3ow8_A 116 KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD---TRGKFILSIAYSPDGKYLASGAIDGIINIFD 192 (321)
T ss_dssp EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE---CSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec---CCCceEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 8888999999999999999999999999999999999987765543 5778899999999999999999999999999
Q ss_pred CCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC
Q 024407 162 ARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240 (268)
Q Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 240 (268)
+++++.+..+. +..++.+++|+|++..++++ +.+ ..+..||.+.+... ..+.+|...|.+++|+|
T Consensus 193 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s~d-g~i~iwd~~~~~~~------------~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA-SDD-GYIKIYDVQHANLA------------GTLSGHASWVLNVAFCP 258 (321)
T ss_dssp TTTTEEEEEECCCSSCCCEEEECTTSCEEEEE-CTT-SCEEEEETTTCCEE------------EEECCCSSCEEEEEECT
T ss_pred CCCCcEEEEEcccCCceeEEEEcCCCCEEEEE-cCC-CeEEEEECCCccee------------EEEcCCCCceEEEEECC
Confidence 99998887765 45678999999987655544 333 34667776654432 23567999999999999
Q ss_pred CCCeEEeeeCCCeEEEEeeCCC
Q 024407 241 DGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 241 ~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
++++|++|+.|++|+||+++..
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTT
T ss_pred CCCEEEEEeCCCcEEEEeCCCC
Confidence 9999999999999999998754
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-33 Score=234.40 Aligned_cols=238 Identities=17% Similarity=0.198 Sum_probs=181.2
Q ss_pred CCCCCCCEEEEeec------CCcEEEeecCCCcE-----EEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeee
Q 024407 1 MFQANSMTLITGSA------DQTAKLWNVETGAQ-----LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI 69 (268)
Q Consensus 1 ~fs~d~~~l~s~s~------D~tv~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (268)
.|||||++|||||. |++|++|+..++.. .....+...+.+++|+|.+.+++++.++ .+.+|++
T Consensus 49 ~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg------~v~lWd~ 122 (357)
T 4g56_B 49 RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSG------AVELWEI 122 (357)
T ss_dssp EECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTS------CEEEC--
T ss_pred EECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCC------EEEEeec
Confidence 38999999999997 78899999876643 2334577789999999998887776654 4455554
Q ss_pred eeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EE
Q 024407 70 ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HF 148 (268)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l 148 (268)
..... .........+|...|+++.|+|++++|++|+.|+.|++||+++++.+..+. +|...|.+++|++++. ++
T Consensus 123 ~~~~~--~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~---~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 123 LEKES--LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN---AHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp --------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTCSSCE
T ss_pred cccce--eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCEEEEEEccCCCcee
Confidence 33211 111123456899999999999999999999999999999999988776654 6999999999999875 78
Q ss_pred EEeeCCCcEEEEECCCcceeeeee---cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc
Q 024407 149 LTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225 (268)
Q Consensus 149 ~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 225 (268)
++++.|++|++||+++++.+..+. ....+.+++|+|.+..++++++.+. .+..||.+.+ +.+..
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~-~i~~wd~~~~------------~~~~~ 264 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG-NVSLVNIKNP------------DSAQT 264 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS-CEEEEESSCG------------GGCEE
T ss_pred eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc-ceeEEECCCC------------cEeEE
Confidence 999999999999999987765543 3446889999998777666655443 4556665543 33445
Q ss_pred ccccccceEEEEECCCC-CeEEeeeCCCeEEEEeeCCC
Q 024407 226 VKGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 226 ~~~h~~~v~~~~~sp~~-~~lasgs~Dg~i~i~~~~~~ 262 (268)
+.+|...|++++|+|++ ++||+|+.||+|+||+++..
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 67888999999999987 67999999999999998754
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-32 Score=228.50 Aligned_cols=243 Identities=23% Similarity=0.301 Sum_probs=183.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCC-------------------CceeeeeecCCeEEEEEcCCCccccc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDS-------------------PARSVDFAVGDKLAVITTDPFMELNS 62 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (268)
||||+++|++|+ |+++++|++.+++.+..+.... .+.+++|+|.+..++.++. ++
T Consensus 72 fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~-----d~ 145 (393)
T 1erj_A 72 FSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE-----DR 145 (393)
T ss_dssp ECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET-----TS
T ss_pred ECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC-----CC
Confidence 899999999976 7899999999998877664221 2678999997766555432 34
Q ss_pred ceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc
Q 024407 63 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 142 (268)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s 142 (268)
.+.+|++ .+++.+..+.+|...|+++.|+|++++|++++.|++|++||+++++....+. +...+.+++++
T Consensus 146 ~i~iwd~------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~ 215 (393)
T 1erj_A 146 LIRIWDI------ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS----IEDGVTTVAVS 215 (393)
T ss_dssp CEEEEET------TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEEC
T ss_pred eEEEEEC------CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE----cCCCcEEEEEE
Confidence 5556654 3456778899999999999999999999999999999999999987765543 55779999999
Q ss_pred C-CCCEEEEeeCCCcEEEEECCCcceeeee--------ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeE
Q 024407 143 A-DGSHFLTGSLDKSAKLWDARTLELIKTY--------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK 213 (268)
Q Consensus 143 ~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 213 (268)
| ++.++++++.|++|++||+++++.+..+ .+...+.+++|+|++..++.++ .+ ..+..||.+.......
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d-~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LD-RSVKLWNLQNANNKSD 293 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TT-SEEEEEEC--------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CC-CEEEEEECCCCCCccc
Confidence 8 8999999999999999999998776655 2455789999999877665544 33 3567777654322111
Q ss_pred eeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 214 FFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
............+.+|...|.+++|+|++++|++|+.||.|++|+....
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 0000111223345689999999999999999999999999999998754
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-31 Score=221.13 Aligned_cols=241 Identities=21% Similarity=0.318 Sum_probs=176.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|++.+|+|||.|++|++||+.+++.+..+. |..++.+++|+|.+..++.++. ++.+.+|++.. ..
T Consensus 84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-----d~~i~~wd~~~-------~~ 151 (343)
T 2xzm_R 84 LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-----EREIKLWNILG-------EC 151 (343)
T ss_dssp ECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-----TSCEEEEESSS-------CE
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-----CCEEEEEeccC-------Cc
Confidence 78999999999999999999999999888776 6788999999997765554432 33455555421 12
Q ss_pred EEEE---ecCCCCeEEEEEcCCC----------CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCE
Q 024407 81 VLIL---KGPQGRINRAVWGPLN----------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 147 (268)
Q Consensus 81 ~~~~---~~~~~~v~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 147 (268)
.... .+|...|.++.|+|++ .+|++++.|+.|++||.. .+....+ .+|...|.+++|+|++.+
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~---~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTF---KAHESNVNHLSISPNGKY 227 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEE---ECCSSCEEEEEECTTSSE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEE---cCccccceEEEECCCCCE
Confidence 2222 2788999999999987 689999999999999953 3333333 369999999999999999
Q ss_pred EEEeeCCCcEEEEECCC-cceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeee-Eeeehhhhhhhcc
Q 024407 148 FLTGSLDKSAKLWDART-LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-KFFDKILQEEIGG 225 (268)
Q Consensus 148 l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~ 225 (268)
|++++.|++|++||+++ ......+.....+.+++|+|.+..+ +++.++ .+..|+...+.... ..+..........
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-a~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 304 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWV-AVGTDQ--GVKIFNLMTQSKAPVCTIEAEPITKAEG 304 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEE-EEEESS--CEEEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred EEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEE-EEECCC--CEEEEEeCCCCCCceEEeecCcchhhhh
Confidence 99999999999999954 3344444456679999999986544 444333 25666655433211 0111000111122
Q ss_pred ccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 226 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 226 ~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
..+|...|++++|+|+|++||+|+.||+|++|+++.
T Consensus 305 ~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 305 QKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp BCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred hcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 347888899999999999999999999999998863
No 21
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.6e-32 Score=218.51 Aligned_cols=240 Identities=18% Similarity=0.228 Sum_probs=176.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCC--cEEEEEe-cCCCceeeeeec---CCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETG--AQLFTFN-FDSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~--~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
|+||+++|||||.|++|++||++.. +.+..+. |..+|.+++|++ +..++..+.+ +.+.+|++...
T Consensus 17 ~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D------~~v~iWd~~~~--- 87 (297)
T 2pm7_B 17 MDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVMIWKEENG--- 87 (297)
T ss_dssp ECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------TEEEEEEBSSS---
T ss_pred ECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC------CEEEEEEcCCC---
Confidence 8999999999999999999999753 4455554 678899999975 3344444443 45566665321
Q ss_pred CCCceEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC---------
Q 024407 76 QGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--------- 144 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--------- 144 (268)
....+..+.+|...|+++.|+|+ +++|++++.|+.|++||++++..... ....+|...|.+++|+|+
T Consensus 88 -~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 88 -RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp -CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSSCEEEEEECCCC--------
T ss_pred -ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eeeecccCccceEeecCCcccccccCC
Confidence 11245567889999999999998 88999999999999999987642211 123479999999999997
Q ss_pred ----CCEEEEeeCCCcEEEEECCCcc----eeeeee-cCCceeEEEEccCC--CeEEEeecCCCceEEEeccCCCe--ee
Q 024407 145 ----GSHFLTGSLDKSAKLWDARTLE----LIKTYV-TERPVNAVTMSPLL--DHVVLGGGQDASAVTTTDHRAGK--FE 211 (268)
Q Consensus 145 ----~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~d~~~~~--~~ 211 (268)
+.+|++++.|++|++||+++++ .+..+. +...+.+++|+|.+ ...+++++.++ .+..||..... ..
T Consensus 166 ~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~-~v~iWd~~~~~~~~~ 244 (297)
T 2pm7_B 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR-TCIIWTQDNEQGPWK 244 (297)
T ss_dssp ----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-CEEEEEESSTTSCCE
T ss_pred CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC-cEEEEEeCCCCCccc
Confidence 4689999999999999998765 333443 56679999999975 34555555554 35566654321 11
Q ss_pred eEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 212 AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
... .....|...|.+++|+|++++||+|+.||+|+||+...+
T Consensus 245 ~~~---------~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 245 KTL---------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp EEE---------SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred eee---------eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 111 011357788999999999999999999999999998743
No 22
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-31 Score=225.61 Aligned_cols=234 Identities=24% Similarity=0.419 Sum_probs=179.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+||+++|+||+.|++|++||+++++.+..+. +...+.+++|+|.+..++.++. ++.+.+|++. +++.
T Consensus 131 ~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----d~~v~iwd~~------~~~~ 199 (393)
T 1erj_A 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----DRTVRIWDLR------TGQC 199 (393)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT------TTEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-----CCcEEEEECC------CCee
Confidence 89999999999999999999999998887776 6778999999997765554432 3455566542 3445
Q ss_pred EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeccc----ccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 81 VLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
...+. +...+.++.|+| ++++|++|+.|+.|++||+++++.+..+.. ..+|...|.+++|+|++.+|++++.|+
T Consensus 200 ~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 200 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 54454 567899999999 889999999999999999999877655421 247899999999999999999999999
Q ss_pred cEEEEECCCcc------------eeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhh
Q 024407 156 SAKLWDARTLE------------LIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 222 (268)
Q Consensus 156 ~i~iwd~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 222 (268)
+|++||+++.. +...+ .+...+.+++++|.+..++.++ .+ ..+..||.+.+..
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D-~~v~iwd~~~~~~------------ 344 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KD-RGVLFWDKKSGNP------------ 344 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TT-SEEEEEETTTCCE------------
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CC-CeEEEEECCCCeE------------
Confidence 99999998642 22222 2455688899999876665544 33 3466777665543
Q ss_pred hccccccccceEEEEECC------CCCeEEeeeCCCeEEEEeeCC
Q 024407 223 IGGVKGHFGPINALAFNP------DGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 223 ~~~~~~h~~~v~~~~~sp------~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+..+.+|...|.+++|+| ++++||||+.||+|+||+++.
T Consensus 345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 233568999999999886 688999999999999999864
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.5e-32 Score=240.11 Aligned_cols=249 Identities=14% Similarity=0.173 Sum_probs=180.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE--------ecCCCceeeeeecCCeEEEE-EcCCCcccccceE---eeee
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF--------NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIH---VKRI 69 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~ 69 (268)
|+||+++|+|||.|++|++||+.+++....+ .|...+..++|+|++..++. +.++.+.+|.... ...+
T Consensus 198 fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 8999999999999999999999999888777 36778999999997765444 4454444433211 0000
Q ss_pred e----------------------------eCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 024407 70 A----------------------------RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 121 (268)
Q Consensus 70 ~----------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 121 (268)
. +.+....+.+...+.+|...|++++|+|++++|++++.|+.|++||+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 0 001112334566778999999999999999999999999999999998765
Q ss_pred eeeeccc---------------------------------------------------------c---------------
Q 024407 122 LLKESDK---------------------------------------------------------E--------------- 129 (268)
Q Consensus 122 ~~~~~~~---------------------------------------------------------~--------------- 129 (268)
....+.. .
T Consensus 358 ~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 4321100 0
Q ss_pred -------cCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce--eeeeecCCceeEEEEccCCCeEEEeecCCCceE
Q 024407 130 -------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAV 200 (268)
Q Consensus 130 -------~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 200 (268)
..|...+.+++|+||+.+|++++.|++|++||+.+.+. +....+...+.+++|+|++..++.++.+. .+
T Consensus 438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~--~v 515 (611)
T 1nr0_A 438 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR--KV 515 (611)
T ss_dssp ETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS--CE
T ss_pred eCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCC--CE
Confidence 01234577899999999999999999999999987543 23345677899999999987766554333 34
Q ss_pred EEeccCC-CeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 201 TTTDHRA-GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 201 ~~~d~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..|+... +.... .....+|...|++++|+|||++||||+.|++|+||+++..
T Consensus 516 ~~w~~~~~~~~~~----------~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 516 IPYSVANNFELAH----------TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp EEEEGGGTTEESC----------CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred EEEEcCCCCceee----------eeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 5555443 21100 0012349999999999999999999999999999999864
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-31 Score=219.24 Aligned_cols=238 Identities=17% Similarity=0.269 Sum_probs=169.8
Q ss_pred CCCCCCEEEEeecCCcEEEeecCC-------CcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVET-------GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
|+|++++|+||+.|++|++||+.. .+....+. |..++.+++|+|.+..++.++. ++.+.+|++...
T Consensus 66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-----D~~v~iwd~~~~- 139 (330)
T 2hes_X 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-----DKSVWIWETDES- 139 (330)
T ss_dssp ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET-----TSCEEEEECCTT-
T ss_pred ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-----CCEEEEEeccCC-
Confidence 899999999999999999999853 23344443 6778999999997766555442 345566655311
Q ss_pred CCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeeecccccCcccceEEEEEcCC--CCEEE
Q 024407 74 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAAD--GSHFL 149 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~ 149 (268)
....+++..+.+|...|+++.|+|++++|++|+.|++|++||..++ +.+.. ..+|...|.+++|+|+ +..|+
T Consensus 140 -~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 140 -GEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV---LNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp -CCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCSSSSCEEE
T ss_pred -CCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE---ccCCCCcEEEEEecCCCCeeEEE
Confidence 1223567788999999999999999999999999999999998765 23333 3479999999999998 67899
Q ss_pred EeeCCCcEEEEECCCc--------ceeeeee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhh
Q 024407 150 TGSLDKSAKLWDARTL--------ELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219 (268)
Q Consensus 150 s~~~d~~i~iwd~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 219 (268)
+++.|++|++||++.. .+...+. +...+.+++|++. ..+++ ++.++ .+..|+...+......
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~l~s-~~~dg-~v~iw~~~~~~~~~~~----- 287 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLIAS-VGADG-VLAVYEEVDGEWKVFA----- 287 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-SCEEE-EETTS-CEEEEEEETTEEEEEE-----
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-CEEEE-EeCCC-EEEEEEcCCCceEEEe-----
Confidence 9999999999998764 2233332 4567899999975 34444 44443 4566665544321110
Q ss_pred hhhhcccccccc-ceEEEEECC--CCCeEEeeeCCCeEEEEeeCC
Q 024407 220 QEEIGGVKGHFG-PINALAFNP--DGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 220 ~~~~~~~~~h~~-~v~~~~~sp--~~~~lasgs~Dg~i~i~~~~~ 261 (268)
....+|.. .|++++|+| ++++||||+.||+|+||+++.
T Consensus 288 ----~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 288 ----KRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ----EESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ----ccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 11245766 899999999 789999999999999999864
No 25
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.7e-32 Score=222.27 Aligned_cols=242 Identities=17% Similarity=0.208 Sum_probs=177.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcE--EEEEe-cCCCceeeeeec---CCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQ--LFTFN-FDSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~--~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
|+||+++|+|||.|++||+||+.+++. +..+. |..+|..++|++ +..++..+.++ .+.+|++...
T Consensus 21 ~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~v~iWd~~~~--- 91 (316)
T 3bg1_A 21 MDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR------KVIIWREENG--- 91 (316)
T ss_dssp ECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS------CEEEECCSSS---
T ss_pred EcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC------EEEEEECCCC---
Confidence 899999999999999999999988753 34444 678899999975 34455544443 4555554321
Q ss_pred CCCceEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC---------
Q 024407 76 QGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--------- 144 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--------- 144 (268)
..+.+..+.+|...|++++|+|+ +.+|++|+.|+.|++||++.+..........+|...|.+++|+|+
T Consensus 92 -~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 92 -TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp -CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------
T ss_pred -cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccc
Confidence 12456678899999999999998 789999999999999999876432222234578899999999987
Q ss_pred --------CCEEEEeeCCCcEEEEECCCc---ceeeeee-cCCceeEEEEccCC---CeEEEeecCCCceEEEeccCCCe
Q 024407 145 --------GSHFLTGSLDKSAKLWDARTL---ELIKTYV-TERPVNAVTMSPLL---DHVVLGGGQDASAVTTTDHRAGK 209 (268)
Q Consensus 145 --------~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~d~~~~~ 209 (268)
+.+|++++.|++|++||++.. +++..+. +...+.+++|+|.+ ...+++++.++ .+..|+.....
T Consensus 171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~-~v~iw~~~~~~ 249 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG-RVFIWTCDDAS 249 (316)
T ss_dssp CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC-EEEEEECSSTT
T ss_pred ccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC-eEEEEEccCcc
Confidence 468999999999999999754 2344433 55679999999975 23444444443 45666654311
Q ss_pred eeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 210 FEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.. ......+..|...|.+++|+|++++||+|+.||+|+||+...+
T Consensus 250 ~~--------~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 250 SN--------TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp CC--------CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred cc--------chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 00 0001123457789999999999999999999999999997643
No 26
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-32 Score=229.68 Aligned_cols=198 Identities=15% Similarity=0.184 Sum_probs=158.0
Q ss_pred CCCCCCEEEE--eecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLIT--GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s--~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|||||++|++ ++.|++||+||+++++.+..+++..+|..++|+|++.+++.+++.... ++.. .++.
T Consensus 141 fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~------~~~~------~~~~ 208 (365)
T 4h5i_A 141 ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLE------VIST------VTGS 208 (365)
T ss_dssp ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEE------EEET------TTCC
T ss_pred EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEE------EEEe------ccCc
Confidence 8999999764 557999999999999999999999999999999988887776654322 2211 1222
Q ss_pred eE--EEEecCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCCceee-ecccccCcccceEEEEEcCCCCEEEEee
Q 024407 80 SV--LILKGPQGRINRAVWGPLNRTIISAGEDA----IVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGS 152 (268)
Q Consensus 80 ~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~~ 152 (268)
.+ ....+|...|.++.|+|+++++++++.|+ .++.||+....... ......+|..+|++++|+|++.+|++++
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs 288 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS 288 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence 22 23457888999999999999999999887 68889987654321 2223347889999999999999999999
Q ss_pred CCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 153 LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 153 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
.|++|+|||+++++++..+ +++|..+
T Consensus 289 ~D~~V~iwd~~~~~~~~~~------------------------------------------------------~~gH~~~ 314 (365)
T 4h5i_A 289 NDNSIALVKLKDLSMSKIF------------------------------------------------------KQAHSFA 314 (365)
T ss_dssp TTSCEEEEETTTTEEEEEE------------------------------------------------------TTSSSSC
T ss_pred CCCEEEEEECCCCcEEEEe------------------------------------------------------cCcccCC
Confidence 9999999999876543321 2368889
Q ss_pred eEEEEECCCCCeEEeeeCCCeEEEEeeCCCcce
Q 024407 233 INALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 265 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~~~ 265 (268)
|++++|||||++|||||.|++||||+++.++-.
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~ 347 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLNYAN 347 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTTTTC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcC
Confidence 999999999999999999999999999877543
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-31 Score=219.50 Aligned_cols=247 Identities=16% Similarity=0.212 Sum_probs=170.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCC--cEEEEEe---cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCC-CC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETG--AQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP-AD 75 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 75 (268)
|+|+ +|+||+.|++|++||++.+ +....+. |..++.+++|+|.+.+++.++. ++.+.+|+..... ..
T Consensus 22 ~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-----D~~v~iw~~~~~~~~~ 94 (330)
T 2hes_X 22 FSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF-----DSTVSIWAKEESADRT 94 (330)
T ss_dssp EETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-----TSCEEEEEC-------
T ss_pred cCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-----CCcEEEEEcccCcCcc
Confidence 5666 9999999999999999875 3444442 6678999999997766555432 3345555543211 11
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
...+++..+.+|.++|+++.|+|++++|++|+.|++|++||++.. +....+....+|...|.+++|+|++.+|++++.|
T Consensus 95 ~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 174 (330)
T 2hes_X 95 FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174 (330)
T ss_dssp CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 234567788999999999999999999999999999999999543 2222222334799999999999999999999999
Q ss_pred CcEEEEECCCc--ceeeeee-cCCceeEEEEccCCC-eEEEeecCCCceEEEeccCCCeee-eEeeehhhhhhhccccc-
Q 024407 155 KSAKLWDARTL--ELIKTYV-TERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAGKFE-AKFFDKILQEEIGGVKG- 228 (268)
Q Consensus 155 ~~i~iwd~~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~- 228 (268)
++|++||++++ +++..+. +...+.++.|+|... ..+++++.++ .+..||.+.+... ...+ .....+.+
T Consensus 175 ~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-~v~iw~~~~~~~~~~~~~-----~~~~~~~~~ 248 (330)
T 2hes_X 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-TVRVWKYMGDDEDDQQEW-----VCEAILPDV 248 (330)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS-CEEEEEEEEECTTSCEEE-----EEEEECCSC
T ss_pred CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-eEEEEEecCCCcccccee-----EEeeecccc
Confidence 99999998765 4555543 566889999999743 2344444443 4556654321000 0000 01112233
Q ss_pred cccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 229 HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|...|.+++|+|++ +||+|+.||+|+||+.+..
T Consensus 249 h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 249 HKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp CSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred cccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 88899999999765 8999999999999998654
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.2e-31 Score=215.44 Aligned_cols=234 Identities=19% Similarity=0.272 Sum_probs=181.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|+++.|++|+.|++|++||+++++.+..+. |...+.+++++|.+..++.++. ++.+.+|++... ...
T Consensus 63 ~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-----D~~v~lWd~~~~-----~~~ 132 (304)
T 2ynn_A 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWENN-----WAL 132 (304)
T ss_dssp EEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSCEEEEEGGGT-----TEE
T ss_pred EeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECC-----CCeEEEEECCCC-----cch
Confidence 78999999999999999999999999988886 6778999999998766555442 345666665321 234
Q ss_pred EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC--CCCEEEEeeCCCcE
Q 024407 81 VLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSA 157 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i 157 (268)
...+.+|...|+++.|+| ++..|++|+.|++|++||+++++....+. .+|...+..++++| ++.+|++++.|++|
T Consensus 133 ~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i 210 (304)
T 2ynn_A 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTI 210 (304)
T ss_dssp EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSEE
T ss_pred hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeE
Confidence 567889999999999999 57899999999999999998876544332 35667888898886 77899999999999
Q ss_pred EEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 158 KLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
++||+++++++..+. +...+..+.++|.+..++.++ .+ ..+..||...+... ..+..|...+.++
T Consensus 211 ~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~D-g~i~iWd~~~~~~~------------~~~~~~~~~~~~~ 276 (304)
T 2ynn_A 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-ED-GTLKIWNSSTYKVE------------KTLNVGLERSWCI 276 (304)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TT-SCEEEEETTTCCEE------------EEECCSSSSEEEE
T ss_pred EEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEc-CC-CeEEEEECCCCcee------------eeccCCCccEEEE
Confidence 999999998888775 556789999999876555443 33 34677776655433 2345677889999
Q ss_pred EECCCCC--eEEeeeCCCeEEEEeeCCC
Q 024407 237 AFNPDGK--SFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 237 ~~sp~~~--~lasgs~Dg~i~i~~~~~~ 262 (268)
+|+|+++ ++|+|+.|| +.+|.+..+
T Consensus 277 ~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 277 ATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred EECCCCCceEEEEecCCc-eEEEEeccC
Confidence 9999875 588888665 556666643
No 29
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.8e-31 Score=221.71 Aligned_cols=236 Identities=18% Similarity=0.293 Sum_probs=191.8
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|++++|++|+.||+|++||+++++.+..+. +...+.++.+. +..++..+.+ +.+.+|++.. ....
T Consensus 142 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d------g~i~i~d~~~-----~~~~ 209 (401)
T 4aez_A 142 WSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN-RHVLSSGSRS------GAIHHHDVRI-----ANHQ 209 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE-TTEEEEEETT------SEEEEEETTS-----SSCE
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC-CCEEEEEcCC------CCEEEEeccc-----Ccce
Confidence 89999999999999999999999999888875 57778888884 3444444433 3455555431 3456
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEE-EEee--CCCcE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGS--LDKSA 157 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~--~d~~i 157 (268)
+..+.+|.+.|+++.|+|++++|++|+.|+.|++||+++++....+. +|...|.+++|+|++..+ ++++ .|+.|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec---CCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence 77889999999999999999999999999999999999987766543 688999999999977654 4544 69999
Q ss_pred EEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 158 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
++||+++++.+..+.....+.++.|+|++..++++++.....+..|+...+..... ..+.+|...|.+++
T Consensus 287 ~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~----------~~~~~h~~~v~~~~ 356 (401)
T 4aez_A 287 HFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ----------VDIPAHDTRVLYSA 356 (401)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEE----------EEEECCSSCCCEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeE----------EEecCCCCCEEEEE
Confidence 99999999998888888889999999998888887665566777887665443221 12457888999999
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|+|++++|++|+.||.|++|++...
T Consensus 357 ~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 357 LSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp ECTTSSEEEEECTTSEEEEEECCC-
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCC
Confidence 9999999999999999999999865
No 30
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.9e-31 Score=223.39 Aligned_cols=236 Identities=19% Similarity=0.328 Sum_probs=185.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+||+++|++|+.|++|++||+++++.+..+. +...+.++.+. +.+++.++. +..+..+... .....
T Consensus 155 fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~-----d~~i~~~d~~-----~~~~~ 222 (420)
T 4gga_A 155 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSR-----SGHIHHHDVR-----VAEHH 222 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET-----TSEEEEEETT-----SSSCE
T ss_pred ECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeC-----CCceeEeeec-----cccee
Confidence 89999999999999999999999999888776 45556665553 334333321 2233333321 22345
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee-ecccccCcccceEEEEEcCCCCE-EEE--eeCCCc
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSH-FLT--GSLDKS 156 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~-l~s--~~~d~~ 156 (268)
+..+.+|...++.+.++|+++++++++.|+.+++||..+++... .+.....|...|.+++|+|.+.. +++ ++.|++
T Consensus 223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~ 302 (420)
T 4gga_A 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 302 (420)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE
T ss_pred eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE
Confidence 67789999999999999999999999999999999998865432 12223468899999999997654 444 457999
Q ss_pred EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
|++||+++++++..+.....+..+.++|.+..++++++.....+..||...+.. +..+.+|.+.|+++
T Consensus 303 I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~------------v~~l~gH~~~V~~l 370 (420)
T 4gga_A 303 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK------------VAELKGHTSRVLSL 370 (420)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE------------EEEECCCSSCEEEE
T ss_pred EEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE------------EEEEcCCCCCEEEE
Confidence 999999999998888888889999999999988888776656677777665443 34467899999999
Q ss_pred EECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 237 AFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+|+|||++|||||.||+|+||++.+
T Consensus 371 ~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 371 TMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999999999999999999864
No 31
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4e-30 Score=209.74 Aligned_cols=236 Identities=19% Similarity=0.303 Sum_probs=181.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEec-CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|++++|+|||.|++|++||+++++.+..+.. ...+.. +.+.+.+++.++.. .....+.. ......
T Consensus 75 ~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~--~~~~~~~l~s~~~~-----~~~~~~~~-----~~~~~~ 142 (318)
T 4ggc_A 75 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS--LSWNSYILSSGSRS-----GHIHHHDV-----RVAEHH 142 (318)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE--EEEETTEEEEEETT-----SEEEEEET-----TSSSCE
T ss_pred ECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE--eecCCCEEEEEecC-----CceEeeec-----CCCcee
Confidence 899999999999999999999999998887764 333333 33333443333221 12222221 123356
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee-cccccCcccceEEEEEcCCCCEE---EEeeCCCc
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHF---LTGSLDKS 156 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l---~s~~~d~~ 156 (268)
+..+.+|...+..+.++++++++++++.|+.|++||+++++.... ......|...|..+++++++..+ ++++.+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 222 (318)
T 4ggc_A 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 222 (318)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE
T ss_pred EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE
Confidence 677889999999999999999999999999999999998764321 22234577889999999877644 46678899
Q ss_pred EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
|++||.+.............+..+.++|.+..++++++.....+..||.+.+.. +..+.+|.+.|+++
T Consensus 223 i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~------------~~~l~gH~~~V~~l 290 (318)
T 4ggc_A 223 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK------------VAELKGHTSRVLSL 290 (318)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE------------EEEECCCSSCEEEE
T ss_pred EEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE------------EEEEcCCCCCEEEE
Confidence 999999998887777777889999999998888887766656677777765543 33467899999999
Q ss_pred EECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 237 AFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+|+|++++|||||.||+|+||++.+
T Consensus 291 ~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 291 TMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999999999999999998753
No 32
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.7e-31 Score=215.67 Aligned_cols=198 Identities=26% Similarity=0.383 Sum_probs=156.1
Q ss_pred CCCCC-CEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANS-MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~-~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|++ ++|+|||.|++|++||+....... +.+
T Consensus 25 ~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-----------------------------------------------~~~ 57 (319)
T 3frx_A 25 TSAGQPNLLLSASRDKTLISWKLTGDDQKF-----------------------------------------------GVP 57 (319)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEEEEETTEE-----------------------------------------------EEE
T ss_pred ccCCCccEEEEecCCccEEEecCCCCCccc-----------------------------------------------ccc
Confidence 67865 899999999999999974321100 123
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+..+++|...|+++.|+|++++|++|+.|++|++||+++++.+..+. +|...|.+++|+|++.++++++.|++|++|
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc---cCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 45678999999999999999999999999999999999998766553 799999999999999999999999999999
Q ss_pred ECCCcceeeeeecCCceeEEEEccCCC-----eEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 161 DARTLELIKTYVTERPVNAVTMSPLLD-----HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
|++.........+...+..+.+.|... ..+++++.+ ..+..||.+..... ..+.+|...|++
T Consensus 135 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~------------~~~~~h~~~v~~ 201 (319)
T 3frx_A 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND-KMVKAWNLNQFQIE------------ADFIGHNSNINT 201 (319)
T ss_dssp ETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETT-SCEEEEETTTTEEE------------EEECCCCSCEEE
T ss_pred ECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCC-CEEEEEECCcchhh------------eeecCCCCcEEE
Confidence 998643333334566788899988532 244444444 34667776654432 234679999999
Q ss_pred EEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 236 LAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 236 ~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
++|+|++++||+|+.||+|+||++...
T Consensus 202 ~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 202 LTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp EEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999999999999998764
No 33
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-30 Score=234.52 Aligned_cols=240 Identities=21% Similarity=0.336 Sum_probs=181.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEE-EcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|+||+++|+|||.|++|++||+.+++....+. |..++.+++|+|.+..++. +.++ .+.+|+.. +.
T Consensus 438 ~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~-------~~ 504 (694)
T 3dm0_A 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR------TIKLWNTL-------GE 504 (694)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTT-------SC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC------EEEEEECC-------CC
Confidence 79999999999999999999999998887775 6788999999997655444 3344 44444321 11
Q ss_pred eEEEE----ecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC
Q 024407 80 SVLIL----KGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 80 ~~~~~----~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
....+ .+|...|+++.|+|++ ..+++++.|+.|++||+++++....+ .+|...|++++|+|++.+|++++.
T Consensus 505 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---~~h~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL---AGHTGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEET
T ss_pred cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEeCCCCEEEEEeC
Confidence 12222 3688999999999987 58999999999999999998776655 379999999999999999999999
Q ss_pred CCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhh-------hhccc
Q 024407 154 DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE-------EIGGV 226 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-------~~~~~ 226 (268)
|++|++||+++++.+..+.....+.+++++|++..+ +++... .+..||.+.+.....+....... .....
T Consensus 582 Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (694)
T 3dm0_A 582 DGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWL-CAATEH--GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658 (694)
T ss_dssp TSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEE-EEEETT--EEEEEETTTTEEEEEECCCCC--------------
T ss_pred CCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEE-EEEcCC--CEEEEECCCCCChhhhccccccccccccccccccC
Confidence 999999999999888887777789999999975444 443333 37888887766543321110000 00011
Q ss_pred cccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 227 KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 227 ~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
..+...|++++|||+|++|+||+.||+|+||++.
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 1222357899999999999999999999999875
No 34
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-32 Score=234.58 Aligned_cols=237 Identities=13% Similarity=0.107 Sum_probs=163.9
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEE----EEEe-cCCCceeeeeecC------CeEEE-EEcCCCcccccceEeeeee
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQL----FTFN-FDSPARSVDFAVG------DKLAV-ITTDPFMELNSAIHVKRIA 70 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~----~~~~-~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~ 70 (268)
+|++++|+|+|.|++|++||+++++.. ..+. +...+..++|+|. ..+++ ++.+ +.+.+|++.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D------gtvrlWd~~ 243 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE------GTINFLEII 243 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT------SCEEEEECC
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC------CeEEEEEcC
Confidence 567777888999999999999877642 2234 3577999999985 23333 4333 455666654
Q ss_pred eCCCC-----CCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEE--EEcC
Q 024407 71 RDPAD-----QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL--AKAA 143 (268)
Q Consensus 71 ~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v--~~s~ 143 (268)
..... ...++...+.+|...|++++|+|+ ..|++|+.||+|++||+++++.... ...+|...|+++ ++++
T Consensus 244 ~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~--~~~~H~~~V~sv~~~~s~ 320 (524)
T 2j04_B 244 DNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSF--YDQVHDSYILSVSTAYSD 320 (524)
T ss_dssp CCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSE--EEECSSSCEEEEEEECCT
T ss_pred CCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceE--EeecccccEEEEEEEcCC
Confidence 32110 112344578899999999999986 5899999999999999997643221 124799999999 5788
Q ss_pred CC-CEEEEeeCCCcEEEEECCCcceeeeeec-C--CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhh
Q 024407 144 DG-SHFLTGSLDKSAKLWDARTLELIKTYVT-E--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219 (268)
Q Consensus 144 ~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 219 (268)
++ .+|+|++.|++|++||+++++++..+.. . ..+.+++|+|++..+++++ .+ ..+..||.+.+..
T Consensus 321 ~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d-~tv~lwd~~~~~~--------- 389 (524)
T 2j04_B 321 FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GA-SSLRAVPSRAAFA--------- 389 (524)
T ss_dssp TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-SS-SEEEEEETTCTTC---------
T ss_pred CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-CC-CcEEEEECccccc---------
Confidence 87 8999999999999999998876655432 2 2367899999876655443 33 2467777665432
Q ss_pred hhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 220 ~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+..+.+|.+.|++++|||++++||||+.||+|++|+....
T Consensus 390 ---~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 390 ---VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp ---CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred ---ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 2335679999999999999999999999999999987654
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.8e-30 Score=215.23 Aligned_cols=241 Identities=15% Similarity=0.204 Sum_probs=184.1
Q ss_pred CCCCC-CEEEEeecCCcEEEeecCCCcEEEEEe---cCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 2 FQANS-MTLITGSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 2 fs~d~-~~l~s~s~D~tv~~wd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
|+|++ ++|++|+.|++|++||+.+++....+. +...+.+++|+| +...++.++. ++.+.+|++.
T Consensus 81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~------ 149 (383)
T 3ei3_B 81 WHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI-----RGATTLRDFS------ 149 (383)
T ss_dssp ECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET-----TTEEEEEETT------
T ss_pred ECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC-----CCEEEEEECC------
Confidence 89998 999999999999999999888777765 678899999999 4454444432 3445555543
Q ss_pred CCceEEEEecC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EEEEee
Q 024407 77 GGESVLILKGP---QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS 152 (268)
Q Consensus 77 ~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~ 152 (268)
+..+..+..+ ...|+++.|+|++++|++|+.|+.|++||++ ++.+..+ .+|...|.+++|+|++. ++++++
T Consensus 150 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 150 -GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKE---KLHKAKVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp -SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEE---ECSSSCEEEEEECSSCTTEEEEEE
T ss_pred -CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEe---ccCCCcEEEEEECCCCCCEEEEEe
Confidence 2344555444 4889999999999999999999999999994 5554444 36899999999999999 899999
Q ss_pred CCCcEEEEECCC----cceeeeeecCCceeEEEEcc-CCCeEEEeecCCCceEEEeccCCCee-----------------
Q 024407 153 LDKSAKLWDART----LELIKTYVTERPVNAVTMSP-LLDHVVLGGGQDASAVTTTDHRAGKF----------------- 210 (268)
Q Consensus 153 ~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~----------------- 210 (268)
.|++|++||+++ .+++..+.+...+.+++|+| ++..+++++.+ ..+..||.+.+..
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 302 (383)
T 3ei3_B 225 VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR--NEIRVYSSYDWSKPDQIIIHPHRQFQHLTP 302 (383)
T ss_dssp TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS--SEEEEEETTBTTSCSEEEECCBCCCTTSCC
T ss_pred CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC--CcEEEEECCCCccccccccccccccccccc
Confidence 999999999998 66677777788899999999 77666655443 3456666432211
Q ss_pred ----------------------------eeEeeehhhhhhhccccc--cccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 211 ----------------------------EAKFFDKILQEEIGGVKG--HFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 211 ----------------------------~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
..++|+....+.+..+.+ |...+.+++|+|++++||+|+ ||.|+||+++
T Consensus 303 ~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 303 IKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp CCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred eEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 134455444444555555 456788889999999999998 9999999987
Q ss_pred C
Q 024407 261 P 261 (268)
Q Consensus 261 ~ 261 (268)
+
T Consensus 382 ~ 382 (383)
T 3ei3_B 382 D 382 (383)
T ss_dssp -
T ss_pred C
Confidence 5
No 36
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.7e-30 Score=227.57 Aligned_cols=224 Identities=28% Similarity=0.509 Sum_probs=178.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|+++.|++++.|++|++||. +++.+..+. +..++..++++|++..++.++. +..+.+|+ .+++.
T Consensus 352 ~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----d~~v~~~~-------~~~~~ 418 (577)
T 2ymu_A 352 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-----DKTVKLWN-------RNGQL 418 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSEEEEEC-------TTCCE
T ss_pred ECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeC-----CCEEEEEe-------CCCCE
Confidence 7999999999999999999996 455666555 6778999999997765554432 23344443 23567
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+..+.+|...|+++.|+|++++|++++.|+.|++||.. ++.+..+ .+|...|.+++|+|++.+|++++.|++|++|
T Consensus 419 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~---~~~~~~v~~~~~spd~~~las~~~d~~i~iw 494 (577)
T 2ymu_A 419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEE---ECCSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 78889999999999999999999999999999999974 4444443 3699999999999999999999999999999
Q ss_pred ECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 161 DARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 161 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
|. +++++..+. +...+.+++|+|++..+++++ .+ ..+..||.. +. .+..+.+|.+.|++++|+
T Consensus 495 ~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~d-g~v~lwd~~-~~------------~~~~~~~h~~~v~~~~fs 558 (577)
T 2ymu_A 495 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DD-KTVKLWNRN-GQ------------LLQTLTGHSSSVWGVAFS 558 (577)
T ss_dssp ET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE-TT-SEEEEECTT-SC------------EEEEEECCSSCEEEEEEC
T ss_pred cC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE-Cc-CEEEEEeCC-CC------------EEEEEcCCCCCEEEEEEc
Confidence 96 556666654 566899999999887666544 33 346667642 22 233456899999999999
Q ss_pred CCCCeEEeeeCCCeEEEEe
Q 024407 240 PDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~ 258 (268)
||+++|+||+.|++|++|+
T Consensus 559 ~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 559 PDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999995
No 37
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.3e-30 Score=227.03 Aligned_cols=229 Identities=25% Similarity=0.440 Sum_probs=179.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+||++.|++++.|++|++||+..........+..++.+++++|++..++.+.. +..+.+|+ .+++.+
T Consensus 311 ~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----dg~v~~~~-------~~~~~~ 378 (577)
T 2ymu_A 311 FSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD-----DKTVKLWN-------RNGQLL 378 (577)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEE-------TTCCEE
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeC-----CCEEEEEc-------CCCCEE
Confidence 799999999999999999999876554433346778899999997766555432 22344443 235677
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
..+.+|..+|+++.|+|++++|++++.|+.|++||. +++.+..+ .+|...|++++|+|++.+|++++.|++|++||
T Consensus 379 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~---~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL---TGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEe---cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 888999999999999999999999999999999996 44544443 36999999999999999999999999999999
Q ss_pred CCCcceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC
Q 024407 162 ARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240 (268)
Q Consensus 162 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 240 (268)
+. ++.+..+ .+...+.+++++|++..+++++.+ ..+..||.. +. .+..+.+|...|++++|+|
T Consensus 455 ~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d--~~i~iw~~~-~~------------~~~~~~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 455 RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDD--KTVKLWNRN-GQ------------LLQTLTGHSSSVRGVAFSP 518 (577)
T ss_dssp TT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETT--SEEEEEETT-SC------------EEEEEECCSSCEEEEEECT
T ss_pred CC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC--CEEEEEcCC-CC------------EEEEEeCCCCCEEEEEEcC
Confidence 75 4555554 356788999999987766655433 345566632 22 2234568999999999999
Q ss_pred CCCeEEeeeCCCeEEEEeeCCC
Q 024407 241 DGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 241 ~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
++++||+|+.||.|+||+..++
T Consensus 519 dg~~l~s~~~dg~v~lwd~~~~ 540 (577)
T 2ymu_A 519 DGQTIASASDDKTVKLWNRNGQ 540 (577)
T ss_dssp TSSCEEEEETTSEEEEECTTSC
T ss_pred CCCEEEEEECcCEEEEEeCCCC
Confidence 9999999999999999997655
No 38
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.4e-31 Score=231.54 Aligned_cols=244 Identities=11% Similarity=0.102 Sum_probs=171.7
Q ss_pred CCCEEEEeecCCcEEEeecCCCcE-----------EEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQ-----------LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 72 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (268)
++.+|||||.|++|++||+.++.. ...+. +..++.+++|+++..++..+.+ +.+.+|++...
T Consensus 224 ~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~D------gtV~lWD~~~~ 297 (524)
T 2j04_B 224 LVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKN------GFVAEFDLTDP 297 (524)
T ss_dssp SSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETT------SEEEEEETTBC
T ss_pred CCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCC------CEEEEEECCCC
Confidence 368999999999999999976632 12333 5677899999987665555444 45556655321
Q ss_pred CCCCCCceEEEEecCCCCeEEE--EEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcc--cceEEEEEcCCCCE
Q 024407 73 PADQGGESVLILKGPQGRINRA--VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSH 147 (268)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~ 147 (268)
..+...+.+|.+.|+++ .|+|++ .+|+|||.|++|++||+++++....+. +|. ..|.+++|+|++..
T Consensus 298 -----~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~---~~~~~~~v~~v~fsp~~~~ 369 (524)
T 2j04_B 298 -----EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV---SRFRGSNLVPVVYCPQIYS 369 (524)
T ss_dssp -----SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE---EECSCCSCCCEEEETTTTE
T ss_pred -----CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc---cccccCcccceEeCCCcCe
Confidence 13445688999999999 578888 899999999999999999876544332 343 24788999999999
Q ss_pred EEEeeCCCcEEEEECCCcceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee---------------
Q 024407 148 FLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE--------------- 211 (268)
Q Consensus 148 l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------------- 211 (268)
+++++.|++|++||++++.++..+ .+...+.+++|+|++..+++++ .++ .+..||...+.+.
T Consensus 370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~Dg-tv~lwd~~~~~~~~~~~~~~~~~~~~v~ 447 (524)
T 2j04_B 370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-ADG-SLIITNAARRLLHGIKNSSATQKSLRLW 447 (524)
T ss_dssp EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TTT-EEECCBSCSSTTTCC------CCCCEEE
T ss_pred EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CCC-EEEEEechHhhccccccCccceeeeEEE
Confidence 999999999999999998876554 4667899999999887666544 333 3445543211100
Q ss_pred ----------eEeee-------hhhhhhhccccccccceEEEEECCCCC---eEEeeeCCCeEEEEeeCCCcc
Q 024407 212 ----------AKFFD-------KILQEEIGGVKGHFGPINALAFNPDGK---SFSSGGEDGYVRLHHFDPDYF 264 (268)
Q Consensus 212 ----------~~~~~-------~~~~~~~~~~~~h~~~v~~~~~sp~~~---~lasgs~Dg~i~i~~~~~~~~ 264 (268)
..+++ ...+..+..+.+|...|++++|+|+++ .+|+|+.||+||||+++.|++
T Consensus 448 ~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~~ 520 (524)
T 2j04_B 448 KWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEHH 520 (524)
T ss_dssp ECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC--
T ss_pred EeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccccc
Confidence 01111 001334456788999999999999964 899999999999999999965
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.98 E-value=1e-29 Score=208.68 Aligned_cols=234 Identities=17% Similarity=0.243 Sum_probs=187.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcE---EEEE---ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQ---LFTF---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
|+|++++|++++ |++|++||+.+++. ...+ .+..++..+.|+|++..+++++. ++.+.+|++...
T Consensus 59 ~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~--- 129 (337)
T 1gxr_A 59 ISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE-----ASTLSIWDLAAP--- 129 (337)
T ss_dssp ECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES-----SSEEEEEECCCC---
T ss_pred EecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC-----CCcEEEEECCCC---
Confidence 899999999999 99999999987643 2222 35677999999998765555432 234555554321
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
.......+.+|...|+++.|+|+++++++++.||.|++||+++++....+. +|...+.+++++|++.++++++.|+
T Consensus 130 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 130 -TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp ---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee---cccCceEEEEECCCCCEEEEEecCC
Confidence 123566788999999999999999999999999999999999987766553 5889999999999999999999999
Q ss_pred cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 156 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 156 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
.|++||+++++.+..+.....+..+.++|++..+++++.+. .+..||.+.+.. ..+..|...|.+
T Consensus 206 ~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~--~i~~~~~~~~~~-------------~~~~~~~~~v~~ 270 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS--NVEVLHVNKPDK-------------YQLHLHESCVLS 270 (337)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTS--CEEEEETTSSCE-------------EEECCCSSCEEE
T ss_pred cEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCC--cEEEEECCCCCe-------------EEEcCCccceeE
Confidence 99999999998888887788899999999887776654433 456666654432 123468889999
Q ss_pred EEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 236 LAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 236 ~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
++|+|++++|++++.||.|++|+++...
T Consensus 271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 9999999999999999999999988653
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.98 E-value=5.5e-29 Score=204.31 Aligned_cols=228 Identities=15% Similarity=0.189 Sum_probs=183.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc--EEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA--QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+|++++|++++.|++|++||+.+++ ....+. +...+..+.+++.+..+++++. ++.+.+|++ .++
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v~~~d~------~~~ 173 (337)
T 1gxr_A 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS-----DGNIAVWDL------HNQ 173 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEET------TTT
T ss_pred EcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC-----CCcEEEEeC------CCC
Confidence 79999999999999999999999887 333443 4667889999997766555432 234555544 345
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
+.+..+.+|...|.++.|+|++++|++++.|+.|++||+++++...... +...+.+++|+|++.++++++.|+.|+
T Consensus 174 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~i~ 249 (337)
T 1gxr_A 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVE 249 (337)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 6778889999999999999999999999999999999999987766543 678899999999999999999999999
Q ss_pred EEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 159 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
+||+++.+......+...+..+.++|++..+++++. + ..+..||...+.... ...|...|.+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~~~~~~~~~~~-------------~~~~~~~v~~~~~ 314 (337)
T 1gxr_A 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK-D-NLLNAWRTPYGASIF-------------QSKESSSVLSCDI 314 (337)
T ss_dssp EEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET-T-SEEEEEETTTCCEEE-------------EEECSSCEEEEEE
T ss_pred EEECCCCCeEEEcCCccceeEEEECCCCCEEEEecC-C-CcEEEEECCCCeEEE-------------EecCCCcEEEEEE
Confidence 999998877655556778999999998776665543 3 356777766554321 1246678999999
Q ss_pred CCCCCeEEeeeCCCeEEEEee
Q 024407 239 NPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 239 sp~~~~lasgs~Dg~i~i~~~ 259 (268)
+|++++|++|+.||.|++|++
T Consensus 315 s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 315 SVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999986
No 41
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=1.1e-30 Score=223.25 Aligned_cols=237 Identities=16% Similarity=0.225 Sum_probs=173.4
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCCCcEEEEEec---CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
|+| |+++|+|||.|++|++||+++......... ...+.++++++.+.++++++. ++.+.+|++.
T Consensus 172 f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-----dg~i~~wd~~------- 239 (435)
T 4e54_B 172 FNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN-----VGNVILLNMD------- 239 (435)
T ss_dssp ECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS-----SSBEEEEESS-------
T ss_pred EeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC-----CCcEeeeccC-------
Confidence 787 789999999999999999987654333332 234678889987776665542 3445566542
Q ss_pred CceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 78 GESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
++.+..+.+|...|+++.|+|+++ .|++|+.|+.|++||+++.+....+....+|...|++++|+|++.+|++++.|++
T Consensus 240 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~ 319 (435)
T 4e54_B 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE 319 (435)
T ss_dssp SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC
T ss_pred cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE
Confidence 234556789999999999999986 6789999999999999987665544444579999999999999999999999999
Q ss_pred EEEEECCCcceeeeeecC-------CceeEEEEccCCCeEEEeecCC----------CceEEEeccCCCeeeeEeeehhh
Q 024407 157 AKLWDARTLELIKTYVTE-------RPVNAVTMSPLLDHVVLGGGQD----------ASAVTTTDHRAGKFEAKFFDKIL 219 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~d~~~~~~~~~~~~~~~ 219 (268)
|++||++++++...+... .......++|.+..+++++..+ ...+..||...+.....+
T Consensus 320 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l----- 394 (435)
T 4e54_B 320 IRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL----- 394 (435)
T ss_dssp EEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE-----
T ss_pred EEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE-----
Confidence 999999988765554211 1223445677666555554332 234666666655543322
Q ss_pred hhhhccccccccceEEE-EECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 220 QEEIGGVKGHFGPINAL-AFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 220 ~~~~~~~~~h~~~v~~~-~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+|...|.++ +|+|+|++||+|+ |+.|+||+++..
T Consensus 395 ------~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 395 ------YDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp ------CCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred ------eCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 23577788887 6999999999887 889999998754
No 42
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.98 E-value=2.2e-29 Score=208.62 Aligned_cols=232 Identities=19% Similarity=0.306 Sum_probs=172.1
Q ss_pred CC-CCCEEEEeecCCcEEEeecCCCc-------EEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 3 QA-NSMTLITGSADQTAKLWNVETGA-------QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 3 s~-d~~~l~s~s~D~tv~~wd~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
++ |+++|+|||.|++|++||+.+.+ ....+. |..++..++++|.+.+++.++ .++.+.+|++
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s-----~D~~v~lwd~---- 105 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS-----WDKTLRLWDL---- 105 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE-----TTSEEEEEET----
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc-----CCCcEEEEEC----
Confidence 45 89999999999999999997542 333443 677899999999776655544 2345666654
Q ss_pred CCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC--------
Q 024407 74 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-------- 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-------- 145 (268)
.+++.+..+.+|..+|+++.|+|++++|++++.|+.|++||+.... ........+|...|.+++|+|++
T Consensus 106 --~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 182 (343)
T 2xzm_R 106 --RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQP 182 (343)
T ss_dssp --TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCS
T ss_pred --CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeeccccccccccCC
Confidence 3456788899999999999999999999999999999999998433 22222234688999999999987
Q ss_pred --CEEEEeeCCCcEEEEECCCcceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhh
Q 024407 146 --SHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 222 (268)
Q Consensus 146 --~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 222 (268)
.++++++.|++|++||.+. +....+ .+...+.+++|+|++..+++++.+ ..+..||.+........
T Consensus 183 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d--g~v~iwd~~~~~~~~~~-------- 251 (343)
T 2xzm_R 183 FAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKD--KKLLIWDILNLTYPQRE-------- 251 (343)
T ss_dssp SCCEEEEEETTSEEEEEETTT-EEEEEEECCSSCEEEEEECTTSSEEEEEETT--CEEEEEESSCCSSCSEE--------
T ss_pred CCCEEEEEcCCCEEEEEcCCC-ceeEEEcCccccceEEEECCCCCEEEEEcCC--CeEEEEECCCCccccee--------
Confidence 7899999999999999543 443333 356689999999988766655433 34667775322211111
Q ss_pred hccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 223 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 223 ~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+...|.+++|+|+++++++| .|+.|++|++...
T Consensus 252 ----~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 252 ----FDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp ----EECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred ----ecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 1233569999999999988755 5888999998653
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.98 E-value=3.1e-31 Score=224.77 Aligned_cols=234 Identities=18% Similarity=0.223 Sum_probs=174.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+|++++|++++.|++|++||+.+++....+.....+....+++.+..+++++. ++.+.+|++ .+++..
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~------~~~~~~ 132 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTT-----EGDIKVLDS------NFNLQR 132 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEET-----TSCEEEECT------TSCEEE
T ss_pred eeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEEC-----CCCEEEEeC------CCccee
Confidence 899999999999999999999987654333322322333345665555444432 234455543 345566
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
..+.+|.+.|+++.|+|++++|++|+.|+.|++||+++++.+..+. +|...|.+++|+|++.+|++++.|++|++||
T Consensus 133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE---CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc---CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence 6678999999999999999999999999999999999987766553 6999999999999999999999999999999
Q ss_pred CCCcceeeeeec----CCceeE---------------------EEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeee
Q 024407 162 ARTLELIKTYVT----ERPVNA---------------------VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD 216 (268)
Q Consensus 162 ~~~~~~~~~~~~----~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 216 (268)
+++++.+..+.. ...+.. +.|+|++..+++++ .+ +.+..||.+.+.....+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~-- 285 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VS-GVITVHNVFSKEQTIQL-- 285 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TT-SCEEEEETTTCCEEEEE--
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CC-CeEEEEECCCCceeEEc--
Confidence 999888777642 223333 44466655554443 33 34677777665533222
Q ss_pred hhhhhhhccccccccceEEEEECCCCC-eEEeeeCCCeEEEEeeCCC
Q 024407 217 KILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~~~~sp~~~-~lasgs~Dg~i~i~~~~~~ 262 (268)
...|...|++++|+|+++ +|++|+.||.|++|+++..
T Consensus 286 ---------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 286 ---------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp ---------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred ---------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 235778899999999998 9999999999999999864
No 44
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.6e-30 Score=212.10 Aligned_cols=238 Identities=9% Similarity=-0.012 Sum_probs=173.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeee---CCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR---DPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 78 (268)
+.+|+++|+||+.|++|++||+++++.+..+. ...+..+.++|. ++..+.++.+ .+|.... ......+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i------~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRL------LLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEE------EEEETTTEEEEEETTTC
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeE------EEEEccCceEEeecCCc
Confidence 45688999999999999999999998887776 455777777776 4444334333 3332211 0112334
Q ss_pred ceEEEEe-cCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC
Q 024407 79 ESVLILK-GPQGRINRAVWGP--LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 79 ~~~~~~~-~~~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
+.+..+. +|.++|.++.|+| +++++++++.||.|++||+++++...... ..|...+.+++|+|++.+|++++.|+
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS--AKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC--CCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--cCCCCceEEEEECCCCCEEEEEcCCC
Confidence 4444444 7788999999999 99999999999999999999988754332 23566899999999999999999999
Q ss_pred cEEEEECCCccee-eeee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 156 SAKLWDARTLELI-KTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 156 ~i~iwd~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
+|++||+++++.+ ..+. +..++.+++|+|++..+++++ ++ .+..||.+.+..... +..+..|...
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~--~v~iwd~~~~~~~~~---------~~~~~~~~~~ 260 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ--TVVCFDLRKDVGTLA---------YPTYTIPEFK 260 (343)
T ss_dssp CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS--BEEEEETTSSTTCBS---------SCCCBC----
T ss_pred EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC--eEEEEEcCCCCccee---------eccccccccc
Confidence 9999999998876 4444 467899999999877666655 33 678888765432111 1111123333
Q ss_pred e--EEEEECCCCCeEEeeeC-CCeEEEEeeCCC
Q 024407 233 I--NALAFNPDGKSFSSGGE-DGYVRLHHFDPD 262 (268)
Q Consensus 233 v--~~~~~sp~~~~lasgs~-Dg~i~i~~~~~~ 262 (268)
+ .+++|+|++++|++|+. |+.|+||+++..
T Consensus 261 ~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 261 TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp -CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 3 46999999999999998 999999999654
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-30 Score=219.92 Aligned_cols=244 Identities=16% Similarity=0.277 Sum_probs=189.3
Q ss_pred CCCCCCC-EEEEe----------ecCCcEEEeecCCCc---EEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEe
Q 024407 1 MFQANSM-TLITG----------SADQTAKLWNVETGA---QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 66 (268)
Q Consensus 1 ~fs~d~~-~l~s~----------s~D~tv~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (268)
.||||++ +|++| +.|++|++||+.+++ .+..+.+..++.+++|++.+..+++++. ++.+.+
T Consensus 19 ~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~v~v 93 (416)
T 2pm9_A 19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALD-----NGSLEL 93 (416)
T ss_dssp CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEES-----SSCEEE
T ss_pred eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEcc-----CCeEEE
Confidence 4899987 99999 899999999998875 4445567888999999997766555432 334555
Q ss_pred eeeeeCCCCCCCceEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc------eeeecccccCcccceEEE
Q 024407 67 KRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGK------LLKESDKETGHKKTITSL 139 (268)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~h~~~v~~v 139 (268)
|++... ....+.+..+.+|...|+++.|+|+ +++|++++.|+.|++||+++++ ....+....+|...|.++
T Consensus 94 w~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 94 YSTNEA--NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp ECCSST--TSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred eecccc--cccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 555321 1123477788999999999999998 8999999999999999999876 333333335788999999
Q ss_pred EEcCC-CCEEEEeeCCCcEEEEECCCcceeeeeec-------CCceeEEEEccCCCeEEEeecCCC--ceEEEeccCCCe
Q 024407 140 AKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVT-------ERPVNAVTMSPLLDHVVLGGGQDA--SAVTTTDHRAGK 209 (268)
Q Consensus 140 ~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~ 209 (268)
+|+|+ +.++++++.|+.|++||+++++.+..+.. ...+.+++|+|.+...+++++.++ ..+..||.+.+.
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99999 78999999999999999999888777654 467899999998765555555443 145555554321
Q ss_pred eeeEeeehhhhhhhcccc-ccccceEEEEECC-CCCeEEeeeCCCeEEEEeeCCC
Q 024407 210 FEAKFFDKILQEEIGGVK-GHFGPINALAFNP-DGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp-~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+..+. +|...|++++|+| ++++|++|+.||.|++|+++..
T Consensus 252 -----------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 252 -----------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp -----------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred -----------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence 1223455 7889999999999 9999999999999999998754
No 46
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=4.8e-29 Score=205.18 Aligned_cols=240 Identities=21% Similarity=0.277 Sum_probs=181.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEec-CCCceeeeeecCCeEEEEE-cCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|+||+++|+||+.|++|++|+............ ...+....+.+.+..++.+ .++ .+.+|+.. ....
T Consensus 94 ~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~------~~~~~d~~-----~~~~ 162 (340)
T 4aow_A 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK------TIKLWNTL-----GVCK 162 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTT-----SCEE
T ss_pred ECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC------eEEEEEeC-----CCce
Confidence 899999999999999999999998877766653 4455666666655544433 333 33333321 1122
Q ss_pred eEEEEecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 80 SVLILKGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
....+.+|...+..+.|++++ ..+++++.|+.|++||+++++....+. +|..+|++++|+|++.+|++++.|++|
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~Dg~i 239 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---GHTGYLNTVTVSPDGSLCASGGKDGQA 239 (340)
T ss_dssp EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec---CCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 334456899999999999876 477899999999999999988766553 699999999999999999999999999
Q ss_pred EEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 158 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
++||+++.+.+..+.....+..+.++|.+ .+++++. + ..+..||.+.+.....+-.. .......+|...|++++
T Consensus 240 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-d-~~i~iwd~~~~~~~~~~~~~---~~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 240 MLWDLNEGKHLYTLDGGDIINALCFSPNR-YWLCAAT-G-PSIKIWDLEGKIIVDELKQE---VISTSSKAEPPQCTSLA 313 (340)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEECSSS-SEEEEEE-T-TEEEEEETTTTEEEEEECCC----------CCCCCEEEEE
T ss_pred EEEEeccCceeeeecCCceEEeeecCCCC-ceeeccC-C-CEEEEEECCCCeEEEecccc---ceeeeccCCCCCEEEEE
Confidence 99999999988888888889999999964 4444443 3 35777887766543332111 11223457889999999
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
|+|++++||||+.||.|+||++..
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCC
Confidence 999999999999999999999864
No 47
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-29 Score=214.74 Aligned_cols=242 Identities=19% Similarity=0.258 Sum_probs=186.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCC-C---------------ceeeeeecCCeEEEEEcCCCcccccceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDS-P---------------ARSVDFAVGDKLAVITTDPFMELNSAIH 65 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (268)
|+|+++.|++++.|++|++||+.+++.+..+.... . +..+.++++..+++.+. ++.+.
T Consensus 157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~i~ 230 (425)
T 1r5m_A 157 WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP------KGAIF 230 (425)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECG------GGCEE
T ss_pred ECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC------CCeEE
Confidence 79999999999999999999999998888776432 2 78888888877655543 34455
Q ss_pred eeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC
Q 024407 66 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG 145 (268)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~ 145 (268)
++++. .++++..+.+|...|+++.|+|++++|++++.|+.|++||+++++....+. +|...|.+++|+|++
T Consensus 231 ~~d~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 231 VYQIT------EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY---GHSQSIVSASWVGDD 301 (425)
T ss_dssp EEETT------CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC---CCSSCEEEEEEETTT
T ss_pred EEEcC------CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEec---CCCccEEEEEECCCC
Confidence 55543 335566788999999999999999999999999999999999887665553 588999999999999
Q ss_pred CEEEEeeCCCcEEEEECCCcceeeeeec-CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeee--------
Q 024407 146 SHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD-------- 216 (268)
Q Consensus 146 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------- 216 (268)
.+++++.|+.|++||+++++.+..+.. ...+.++.++|++..+++++.+. .+..||.+.+........
T Consensus 302 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~ 378 (425)
T 1r5m_A 302 -KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG--QVNVYDLKKLNSKSRSLYGNRDGILN 378 (425)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS--CEEEEECHHHHC--------------
T ss_pred -EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC--eEEEEECCCCccceeeeecccccccC
Confidence 999999999999999999888777653 56889999999877666654433 455555443220000000
Q ss_pred hhhhhhhcccccccc--ceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 217 KILQEEIGGVKGHFG--PINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 217 ~~~~~~~~~~~~h~~--~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
......+..+.+|.. .|++++|+|++++|++|+.||.|++|++++
T Consensus 379 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 379 PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred cccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 000013445667766 899999999999999999999999999874
No 48
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.1e-31 Score=221.10 Aligned_cols=240 Identities=18% Similarity=0.181 Sum_probs=174.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCC--cEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETG--AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+||+++|++|+.|++|++||+.++ +.+..+. +..++..++|+|.+..++.++. ++.+.+|++.... ..
T Consensus 19 ~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----d~~v~vwd~~~~~---~~ 90 (377)
T 3dwl_C 19 FNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ-----DRNAYVYEKRPDG---TW 90 (377)
T ss_dssp ECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET-----TSSEEEC---------CC
T ss_pred ECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC-----CCeEEEEEcCCCC---ce
Confidence 8999999999999999999999987 4554554 6778999999997665544432 3345555553321 12
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccC-cccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG-HKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.+...+.+|...|+++.|+|++++|++++.|+.|++||+++++.........+ |...|.+++|+|++.+|++++.|++|
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i 170 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKA 170 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCE
T ss_pred eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEE
Confidence 35667789999999999999999999999999999999998763211122234 89999999999999999999999999
Q ss_pred EEEECC------------------CcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhh
Q 024407 158 KLWDAR------------------TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219 (268)
Q Consensus 158 ~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 219 (268)
++||++ .++++..+.+...+.+++|+|++..+++++.+ ..+..||.+.+.....
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~i~iwd~~~~~~~~~------ 242 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD--SSVTIAYPSAPEQPPR------ 242 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT--TEEC-CEECSTTSCEE------
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC--CcEEEEECCCCCCcce------
Confidence 999985 34455555556679999999988766665433 3455666554432110
Q ss_pred hhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 220 ~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.+..+.+|...|.+++|+|++++|++|+.|+.+ +|...
T Consensus 243 --~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 243 --ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp --ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred --eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 134567888999999999999999999877766 66565
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1.7e-29 Score=214.16 Aligned_cols=236 Identities=16% Similarity=0.223 Sum_probs=182.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|++++|++|+.|++|++||+++++....+ .+..++.+++|+|.+..++.++. ++.+.+|++. +++.
T Consensus 105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~------~~~~ 173 (420)
T 3vl1_A 105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ-----DMQLKIWSVK------DGSN 173 (420)
T ss_dssp ECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT------TCCC
T ss_pred EecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeC-----CCeEEEEeCC------CCcC
Confidence 7899999999999999999999988877765 47788999999998766555442 3455666553 3456
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEE---------------------E
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS---------------------L 139 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~---------------------v 139 (268)
+..+.+|...|+++.|+|++++|++++.|+.|++||+++++.+..+.....|...+.+ +
T Consensus 174 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 253 (420)
T 3vl1_A 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL 253 (420)
T ss_dssp CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccce
Confidence 6778999999999999999999999999999999999998877766543334444444 4
Q ss_pred EEcCCCCEEEEeeCCCcEEEEECCCcceeeeee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeeh
Q 024407 140 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 217 (268)
Q Consensus 140 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 217 (268)
+|+|++.+|++++.|+.|++||+++++.+..+. +...+.+++|+|.+...+++++.+ +.+..||.+.+...
T Consensus 254 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~------ 326 (420)
T 3vl1_A 254 EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN-GMLAQWDLRSPECP------ 326 (420)
T ss_dssp CSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT-SEEEEEETTCTTSC------
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC-CeEEEEEcCCCcCc------
Confidence 557899999999999999999999988776664 345799999999887445444444 35677776654321
Q ss_pred hhhhhhccccc-cccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 218 ILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 218 ~~~~~~~~~~~-h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+..+.+ |...|.++.+ |++++|++|+.||.|++|++..
T Consensus 327 -----~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 327 -----VGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp -----SEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred -----hhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 122233 5567888865 5788999999999999999876
No 50
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.4e-29 Score=205.84 Aligned_cols=254 Identities=16% Similarity=0.255 Sum_probs=184.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc----EEEEEe-cCCCceeeeeec---CCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA----QLFTFN-FDSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~----~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
|+|++++|++|+.|++|++||+.++. ....+. +..++.+++|++ +..++.++. ++.+.+|++....
T Consensus 19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~------dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 19 YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY------DKTVKLWEEDPDQ 92 (351)
T ss_dssp ECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET------TSCEEEEEECTTS
T ss_pred EcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC------CCeEEEEecCCCc
Confidence 89999999999999999999998763 444444 678899999998 334444443 3456666664432
Q ss_pred CCCC---CceEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeecc----------cccCcccceEE
Q 024407 74 ADQG---GESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESD----------KETGHKKTITS 138 (268)
Q Consensus 74 ~~~~---~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~~h~~~v~~ 138 (268)
.... .+++..+.+|...|+++.|+|+ +++|++++.||.|++||+++++.+..+. ...+|...+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 93 EECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp CTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred ccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence 1111 1557778899999999999999 9999999999999999999876543221 11257789999
Q ss_pred EEEcCC---CCEEEEeeCCCcEEEEECCCcce--eeeee-cCCceeEEEEccCCC---eEEEeecCCCceEEEeccCCCe
Q 024407 139 LAKAAD---GSHFLTGSLDKSAKLWDARTLEL--IKTYV-TERPVNAVTMSPLLD---HVVLGGGQDASAVTTTDHRAGK 209 (268)
Q Consensus 139 v~~s~~---~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~d~~~~~ 209 (268)
++++|+ +..+++++.|+.+.+|+...++. +..+. +...+.++.|+|.+. ..+++++.++ .+..||.+.+.
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg-~i~iwd~~~~~ 251 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG-RIRIFKITEKL 251 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS-CEEEEEEEECC
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC-eEEEEeCCCCc
Confidence 999997 89999999999998888877654 33332 456899999999863 3444444443 45666655431
Q ss_pred eeeE----------------------------------eeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEE
Q 024407 210 FEAK----------------------------------FFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 255 (268)
Q Consensus 210 ~~~~----------------------------------~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~ 255 (268)
.... .++....+.+..+.+|...|++++|+|++++|++|+.||.|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~ 331 (351)
T 3f3f_A 252 SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 331 (351)
T ss_dssp ---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEE
Confidence 1100 001011123345678999999999999999999999999999
Q ss_pred EEeeCCC
Q 024407 256 LHHFDPD 262 (268)
Q Consensus 256 i~~~~~~ 262 (268)
||+++.+
T Consensus 332 iw~~~~~ 338 (351)
T 3f3f_A 332 LWKATYS 338 (351)
T ss_dssp EEEECTT
T ss_pred EEecCcC
Confidence 9999864
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.6e-30 Score=218.45 Aligned_cols=252 Identities=14% Similarity=0.200 Sum_probs=176.5
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCC---C---cEEEEEecCCCceeeeeecCCeEEE-EEcCCCcccccce---------
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVET---G---AQLFTFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAI--------- 64 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------- 64 (268)
|+| ++++|+|||.|++|++||+.+ + +....+.+..++.+++|++.+..++ ++.++.+.++...
T Consensus 71 ~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 150 (437)
T 3gre_A 71 VSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK 150 (437)
T ss_dssp EECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE
T ss_pred ECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee
Confidence 789 999999999999999999876 3 2345556889999999999665444 4445544443221
Q ss_pred -----Eeeee---------------------------------eeCCCCCCCceEEEEec--CCCCeEEEEEcCCCCEEE
Q 024407 65 -----HVKRI---------------------------------ARDPADQGGESVLILKG--PQGRINRAVWGPLNRTII 104 (268)
Q Consensus 65 -----~~~~~---------------------------------~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~ 104 (268)
.+..+ .+.+...+++++..+.+ |.+.|++++|+|++++|+
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 230 (437)
T 3gre_A 151 FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLI 230 (437)
T ss_dssp EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEE
T ss_pred ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEE
Confidence 00000 01122345677888888 889999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc----CCCCEEEEeeCCCcEEEEECCCcceeeeee--------
Q 024407 105 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA----ADGSHFLTGSLDKSAKLWDARTLELIKTYV-------- 172 (268)
Q Consensus 105 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------- 172 (268)
+|+.||.|++||+++++.+..+.. .|..+|.+++++ +++.+|++++.|++|++||+++++++..+.
T Consensus 231 s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 308 (437)
T 3gre_A 231 LGTTRGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSM 308 (437)
T ss_dssp EEETTSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCG
T ss_pred EEcCCCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcc
Confidence 999999999999999887765532 477799999555 567799999999999999999888766654
Q ss_pred -------------------cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeee-----------------
Q 024407 173 -------------------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD----------------- 216 (268)
Q Consensus 173 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----------------- 216 (268)
+...+.+++++ .+ ..+++++.+ ..+..||...+.....+..
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (437)
T 3gre_A 309 EHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEAT-SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANL 385 (437)
T ss_dssp GGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGG-TEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTE
T ss_pred ceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCC-CeEEEEECCCcccceEEecccccCceEEEEEeecce
Confidence 22346677887 33 444554444 3577788765543222211
Q ss_pred --------hhhhhhhccccccccceEEEEECCC--CCeEEeeeCCCeEEEEe
Q 024407 217 --------KILQEEIGGVKGHFGPINALAFNPD--GKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 217 --------~~~~~~~~~~~~h~~~v~~~~~sp~--~~~lasgs~Dg~i~i~~ 258 (268)
............|.+.|++++|+++ +.+|+||+.||.|+||+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 386 TMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 1111112233458999999999988 78999999999999995
No 52
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.3e-29 Score=207.15 Aligned_cols=243 Identities=17% Similarity=0.199 Sum_probs=178.9
Q ss_pred CCCCCCCEEEEeecCCcEEEeecC--CCcEEEEEe-cCCCceeeeeecC--CeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVE--TGAQLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~--~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
.|+|++++|++|+.|++|++||+. +++.+..+. +..++.++.|++. +..++.++. ++.+.+|++...
T Consensus 18 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~--- 89 (379)
T 3jrp_A 18 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-----DGKVLIWKEENG--- 89 (379)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----TSCEEEEEEETT---
T ss_pred EEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc-----CCEEEEEEcCCC---
Confidence 389999999999999999999998 445555554 6778999999754 444443332 345566665421
Q ss_pred CCCceEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC----------
Q 024407 76 QGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA---------- 143 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~---------- 143 (268)
....+..+.+|...|+++.|+|+ +++|++++.|+.|++||++++...... ...+|...|.+++|+|
T Consensus 90 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~ 167 (379)
T 3jrp_A 90 -RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHN 167 (379)
T ss_dssp -EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE-EEECCTTCEEEEEECCCC--------
T ss_pred -ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE-EecCCCCceEEEEEcCcccccccccc
Confidence 11256778889999999999999 999999999999999999987443322 1246889999999999
Q ss_pred ---CCCEEEEeeCCCcEEEEECCCccee----eeee-cCCceeEEEEccCC--CeEEEeecCCCceEEEeccCCCeeeeE
Q 024407 144 ---DGSHFLTGSLDKSAKLWDARTLELI----KTYV-TERPVNAVTMSPLL--DHVVLGGGQDASAVTTTDHRAGKFEAK 213 (268)
Q Consensus 144 ---~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~d~~~~~~~~~ 213 (268)
++.++++++.|+.|++||+++.+.. ..+. +...+.+++|+|.+ ...+++++.++ .+..||.+.+.....
T Consensus 168 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 168 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-TCIIWTQDNEQGPWK 246 (379)
T ss_dssp --CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-CEEEEEESSTTSCCE
T ss_pred CCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC-EEEEEeCCCCCccce
Confidence 6999999999999999999876432 2222 45679999999983 34444444443 456666554421100
Q ss_pred eeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 214 FFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
........|...|++++|+|++++|++++.||.|++|+++.
T Consensus 247 -------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 247 -------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp -------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred -------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 01112235778899999999999999999999999999874
No 53
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=5.1e-29 Score=212.66 Aligned_cols=245 Identities=15% Similarity=0.158 Sum_probs=171.8
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc-----------EEEEEe-cC------------CCceeeeeecCC---eEEEEEc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA-----------QLFTFN-FD------------SPARSVDFAVGD---KLAVITT 54 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~-----------~~~~~~-~~------------~~~~~~~~~~~~---~~~~~~~ 54 (268)
|+|++++||+|+.||+|++||+.+++ ....+. +. .+|..++|+|.+ .++..+.
T Consensus 36 ~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~ 115 (447)
T 3dw8_B 36 FNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN 115 (447)
T ss_dssp ECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEEC
T ss_pred ECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCC
Confidence 89999999999999999999998876 344554 44 779999999975 4555555
Q ss_pred CCCcccccceEeeeeeeCCC--CCC-------------------------CceEEE-EecCCCCeEEEEEcCCCCEEEEE
Q 024407 55 DPFMELNSAIHVKRIARDPA--DQG-------------------------GESVLI-LKGPQGRINRAVWGPLNRTIISA 106 (268)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~--~~~-------------------------~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~ 106 (268)
++.+.++............. ... ..+... ..+|...|+++.|+|++++|++|
T Consensus 116 d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 195 (447)
T 3dw8_B 116 DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA 195 (447)
T ss_dssp SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE
T ss_pred CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe
Confidence 54444333222111000000 000 011223 36899999999999999999998
Q ss_pred eCCCcEEEEECCCC-ceeeec----ccccCcccceEEEEEcCCC-CEEEEeeCCCcEEEEECCCcce----eeeeecCC-
Q 024407 107 GEDAIVRIWDTETG-KLLKES----DKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLEL----IKTYVTER- 175 (268)
Q Consensus 107 ~~dg~i~iwd~~~~-~~~~~~----~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~- 175 (268)
.|+.|++||+++. +.+..+ ....+|...|.+++|+|++ .+|++++.|++|++||+++++. +..+....
T Consensus 196 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 274 (447)
T 3dw8_B 196 -DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED 274 (447)
T ss_dssp -CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--
T ss_pred -CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC
Confidence 8999999999843 333211 1234689999999999998 9999999999999999998875 45544332
Q ss_pred ------------ceeEEEEccCCCeEEEeecCCCceEEEeccCC-CeeeeEeeehhhhhhhcccccccc-----------
Q 024407 176 ------------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA-GKFEAKFFDKILQEEIGGVKGHFG----------- 231 (268)
Q Consensus 176 ------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~h~~----------- 231 (268)
.+.+++|+|++..+++++ . ..+..||.+. +... ..+.+|..
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~--~~v~iwd~~~~~~~~------------~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 275 PSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y--LSVKVWDLNMENRPV------------ETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp ---CCHHHHHTTCEEEEEECTTSSEEEEEE-S--SEEEEEETTCCSSCS------------CCEESCGGGTTTHHHHHHT
T ss_pred ccccccccccCceEEEEEECCCCCEEEEee-C--CeEEEEeCCCCcccc------------ceeeccccccccccccccc
Confidence 789999999877666543 3 5677887764 3221 12223321
Q ss_pred ----ceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 232 ----PINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 232 ----~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+..++|+|++++|++|+.||.|++|+++..
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 1345999999999999999999999998865
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=207.26 Aligned_cols=244 Identities=15% Similarity=0.222 Sum_probs=183.6
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCCCcEEEEEe--------------cCCCceeeeeec-CCeEEEEEcCCCcccccceE
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVETGAQLFTFN--------------FDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 65 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~~~~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 65 (268)
|+| ++++|++|+.|++|++||++++.....+. +..++..+.|+| +..++++++. ++.+.
T Consensus 51 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~ 125 (408)
T 4a11_B 51 IEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF-----DKTLK 125 (408)
T ss_dssp ECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET-----TSEEE
T ss_pred EecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC-----CCeEE
Confidence 899 99999999999999999998876544433 677899999998 5544444331 33455
Q ss_pred eeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc
Q 024407 66 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 142 (268)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s 142 (268)
+|++. +++.+..+. +...+.++.++|.+ .++++++.|+.|++||+++++....+. +|...|.+++|+
T Consensus 126 iwd~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~v~~~~~~ 195 (408)
T 4a11_B 126 VWDTN------TLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ---GHRQEILAVSWS 195 (408)
T ss_dssp EEETT------TTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC---CCCSCEEEEEEC
T ss_pred EeeCC------CCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec---CCCCcEEEEEEC
Confidence 55542 344555454 77889999999855 499999999999999999987766553 689999999999
Q ss_pred CCCCE-EEEeeCCCcEEEEECCCcc-eeeee----------------ecCCceeEEEEccCCCeEEEeecCCCceEEEec
Q 024407 143 ADGSH-FLTGSLDKSAKLWDARTLE-LIKTY----------------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 204 (268)
Q Consensus 143 ~~~~~-l~s~~~d~~i~iwd~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 204 (268)
|++.+ +++++.|+.|++||+++.+ .+..+ .+...+.+++++|++..+++++.+. .+..||
T Consensus 196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd 273 (408)
T 4a11_B 196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN--RMRLWN 273 (408)
T ss_dssp SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS--CEEEEE
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC--eEEEEE
Confidence 99984 8899999999999998764 22222 2445789999999877766655443 466676
Q ss_pred cCCCeee-----------------------------------eEeeehhhhhhhccccccccceEEEEECCCCCeEEeee
Q 024407 205 HRAGKFE-----------------------------------AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 249 (268)
Q Consensus 205 ~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs 249 (268)
.+.+... ..+|+....+.+..+.+|...|++++|+|++++|++|+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC
Confidence 5543321 22344334445566778999999999999999999999
Q ss_pred CCCeEEEEeeCCC
Q 024407 250 EDGYVRLHHFDPD 262 (268)
Q Consensus 250 ~Dg~i~i~~~~~~ 262 (268)
.||.|++|+++..
T Consensus 354 ~dg~i~iw~~~~~ 366 (408)
T 4a11_B 354 RDCNILAWVPSLY 366 (408)
T ss_dssp TTSCEEEEEECC-
T ss_pred CCCeEEEEeCCCC
Confidence 9999999999864
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-28 Score=206.22 Aligned_cols=234 Identities=16% Similarity=0.224 Sum_probs=181.9
Q ss_pred CCCCCC-EEEEeecCCcEEEeec----CCCc------EEEEEec-----------CCCceeeeeecCCeEEEEEcCCCcc
Q 024407 2 FQANSM-TLITGSADQTAKLWNV----ETGA------QLFTFNF-----------DSPARSVDFAVGDKLAVITTDPFME 59 (268)
Q Consensus 2 fs~d~~-~l~s~s~D~tv~~wd~----~~~~------~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (268)
|+|+++ +|++|+.|++|++||+ .+++ ....+.+ ..++.+++|+|.+..+++++.
T Consensus 53 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---- 128 (425)
T 1r5m_A 53 WNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE---- 128 (425)
T ss_dssp ECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET----
T ss_pred ECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC----
Confidence 899999 9999999999999999 8887 4555544 447999999997766555432
Q ss_pred cccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecc------------
Q 024407 60 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD------------ 127 (268)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------ 127 (268)
++.+.+|+ ..++.+..+.+|...|+++.|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 129 -dg~i~i~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 129 -NGELRLWN-------KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp -TSCEEEEE-------TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred -CCeEEEEe-------CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 23445554 2456778889999999999999999999999999999999998765543211
Q ss_pred -----------------------------------------cccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcc
Q 024407 128 -----------------------------------------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 166 (268)
Q Consensus 128 -----------------------------------------~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~ 166 (268)
...+|...|.+++|+|++.+|++++.|+.|++||+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN 280 (425)
T ss_dssp -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS
T ss_pred cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 112578899999999999999999999999999999988
Q ss_pred eeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeE
Q 024407 167 LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF 245 (268)
Q Consensus 167 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 245 (268)
.+..+. +...+..+.++|.+ .++++ +.+ ..+..||.+.+.... .+..|...|.+++|+|++++|
T Consensus 281 ~~~~~~~~~~~i~~~~~~~~~-~l~~~-~~d-~~i~i~d~~~~~~~~------------~~~~~~~~i~~~~~s~~~~~l 345 (425)
T 1r5m_A 281 SQNCFYGHSQSIVSASWVGDD-KVISC-SMD-GSVRLWSLKQNTLLA------------LSIVDGVPIFAGRISQDGQKY 345 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTT-EEEEE-ETT-SEEEEEETTTTEEEE------------EEECTTCCEEEEEECTTSSEE
T ss_pred cceEecCCCccEEEEEECCCC-EEEEE-eCC-CcEEEEECCCCcEeE------------ecccCCccEEEEEEcCCCCEE
Confidence 777764 56688999999976 44443 333 356777766554322 234577889999999999999
Q ss_pred EeeeCCCeEEEEeeCCC
Q 024407 246 SSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 246 asgs~Dg~i~i~~~~~~ 262 (268)
++|+.||.|++|+++..
T Consensus 346 ~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 346 AVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp EEEETTSCEEEEECHHH
T ss_pred EEEECCCeEEEEECCCC
Confidence 99999999999998754
No 56
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.7e-29 Score=209.72 Aligned_cols=236 Identities=14% Similarity=0.201 Sum_probs=178.0
Q ss_pred CCCC----CCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 2 FQAN----SMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 2 fs~d----~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
|+|+ +++|++|+.|++|++||+.+++.+..+. +..++..+.|+| ++..+++++. ++.+.+|++
T Consensus 77 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-----dg~i~iwd~------ 145 (366)
T 3k26_A 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-----DHALRLWNI------ 145 (366)
T ss_dssp EEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-----TSCEEEEET------
T ss_pred eccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-----CCeEEEEEe------
Confidence 6777 6799999999999999999999988887 788899999999 6665555432 345555554
Q ss_pred CCCceEEEE---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecc-------------------------
Q 024407 76 QGGESVLIL---KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD------------------------- 127 (268)
Q Consensus 76 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------- 127 (268)
..++.+..+ .+|...|+++.|+|++++|++++.||.|++||+++++....+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred ecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 344566666 6899999999999999999999999999999999865443221
Q ss_pred cccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce--------------eeeee-cCCceeEEEEccC--CCeEE
Q 024407 128 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--------------IKTYV-TERPVNAVTMSPL--LDHVV 190 (268)
Q Consensus 128 ~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~--------------~~~~~-~~~~~~~~~~~~~--~~~~~ 190 (268)
...+|...|.+++|+ +.++++++.|+.|++||+++.+. +..+. +...+.+++++|+ +..++
T Consensus 226 ~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 226 TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 112388999999998 77999999999999999987643 33332 3446777888887 65555
Q ss_pred EeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccc--ccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 191 LGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH--FGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 191 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+++ .+ +.+..||...+.... .....+.+| ...|++++|+|++++|++|+.||.|++|++.
T Consensus 304 ~~~-~d-g~i~vwd~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGN-QV-GKLYVWDLEVEDPHK--------AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEC-TT-SCEEEEECCSSSGGG--------CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEe-cC-CcEEEEECCCCCCcc--------ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 443 33 356677765543211 011134455 6899999999999999999999999999875
No 57
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1e-28 Score=205.63 Aligned_cols=236 Identities=14% Similarity=0.167 Sum_probs=181.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc--EEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA--QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+||+++|++|+.|++|++||+++++ .+..+. +..++..+.|+|.+..+++++. ++.+.+|++... ..
T Consensus 16 ~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~----~~ 86 (372)
T 1k8k_C 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-----DRNAYVWTLKGR----TW 86 (372)
T ss_dssp ECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-----TSCEEEEEEETT----EE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC-----CCeEEEEECCCC----ee
Confidence 89999999999999999999999886 666665 6788999999997766555432 345566655321 11
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeec-ccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.....+.+|...|+++.|+|++++|++++.|+.|++||++.++..... ....+|...|.+++|+|++.+|++++.|+.|
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 166 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCE
Confidence 223345679999999999999999999999999999999887632111 1124688999999999999999999999999
Q ss_pred EEEECC------------------Ccceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehh
Q 024407 158 KLWDAR------------------TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 218 (268)
Q Consensus 158 ~iwd~~------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 218 (268)
++||++ .++.+..+. +...+.++.++|++..+++++.+ ..+..||.+.+..
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~-------- 236 (372)
T 1k8k_C 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD--STVCLADADKKMA-------- 236 (372)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT--TEEEEEEGGGTTE--------
T ss_pred EEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC--CEEEEEECCCCce--------
Confidence 999964 455665553 45678999999987766655433 3456666554432
Q ss_pred hhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 219 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 219 ~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+..+..|..+|.+++|+|++++|++| .|+.|++|+++.
T Consensus 237 ----~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 237 ----VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ----EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ----eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 33345677899999999999999987 899999999986
No 58
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=7.5e-30 Score=217.96 Aligned_cols=200 Identities=20% Similarity=0.211 Sum_probs=153.4
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+| ++++||||+.||+|++||+.+++...
T Consensus 127 ~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-------------------------------------------------- 156 (435)
T 4e54_B 127 WHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-------------------------------------------------- 156 (435)
T ss_dssp ECSSCTTCEEEEETTSCEEEECSSCCSCCE--------------------------------------------------
T ss_pred EeCCCCCEEEEEeCCCEEEEEECCCCCcee--------------------------------------------------
Confidence 788 56789999999999999987654311
Q ss_pred EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 81 VLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
...+.+|.+.|+++.|+| ++++|++|+.||+|++||++++... .+.....+...+.+++|++++.+|++++.|++|++
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~ 235 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVIL 235 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEee
Confidence 112357999999999998 6789999999999999999875432 22222345567889999999999999999999999
Q ss_pred EECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 160 WDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
||++..+......+...+.+++|+|.+..++++++.++ .+..||.+...... .+....+|...|++++|+
T Consensus 236 wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~-~v~iwd~~~~~~~~---------~~~~~~~h~~~v~~~~~s 305 (435)
T 4e54_B 236 LNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ-TVKIWDLRQVRGKA---------SFLYSLPHRHPVNAACFS 305 (435)
T ss_dssp EESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS-BCCEEETTTCCSSS---------CCSBCCBCSSCEEECCBC
T ss_pred eccCcceeEEEecccceEEeeeecCCCceEEEEecCcc-eeeEEecccccccc---------eEEEeeeccccccceeEC
Confidence 99986443322235678999999998887776665554 35566655433211 122335788999999999
Q ss_pred CCCCeEEeeeCCCeEEEEeeCCC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|+|++|++|+.||.|+||++...
T Consensus 306 pdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 306 PDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp TTSSEEEEEESSSCEEEEESSSS
T ss_pred CCCCeeEEEcCCCEEEEEECCCC
Confidence 99999999999999999998753
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=6.6e-29 Score=205.56 Aligned_cols=240 Identities=18% Similarity=0.251 Sum_probs=175.7
Q ss_pred CCCCCCEE-EEeec---CCcEEEeecCCCcEEE--EEecCCCceeeeeecC----CeEEEEEcCCCcccccceEeeeeee
Q 024407 2 FQANSMTL-ITGSA---DQTAKLWNVETGAQLF--TFNFDSPARSVDFAVG----DKLAVITTDPFMELNSAIHVKRIAR 71 (268)
Q Consensus 2 fs~d~~~l-~s~s~---D~tv~~wd~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (268)
|+|+++.| ++|+. |++|++||+++++... ...+..++.++.|+|. ..++..+.+ +.+.+|++.
T Consensus 26 ~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~- 98 (357)
T 3i2n_A 26 WVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG------GNLHIWNLE- 98 (357)
T ss_dssp ECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT------SCEEEECTT-
T ss_pred EcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC------CeEEEEeCC-
Confidence 89998655 56665 9999999999887644 3457889999999996 334444333 344555443
Q ss_pred CCCCCCCc-eEEEEecCCCCeEEEE------EcCCCCEEEEEeCCCcEEEEECCCCc-eeeecccccCc-ccceEEEE--
Q 024407 72 DPADQGGE-SVLILKGPQGRINRAV------WGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGH-KKTITSLA-- 140 (268)
Q Consensus 72 ~~~~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~h-~~~v~~v~-- 140 (268)
.++ ++..+.+|...|+++. |+|++++|++++.|+.|++||+++++ ....+....++ ...+.+++
T Consensus 99 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 99 -----APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp -----SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred -----CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEE
Confidence 223 5677889999999995 57899999999999999999999876 44444332222 34788888
Q ss_pred --EcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEcc---CCCeEEEeecCCCceEEEeccCCCeeeeEee
Q 024407 141 --KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP---LLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 215 (268)
Q Consensus 141 --~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 215 (268)
+++++.++++++.|+.|++||+++++......+...+.++.++| .+..+++++.+ ..+..||.+.+.....+
T Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~- 250 (357)
T 3i2n_A 174 NAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE--GKFHVFDMRTQHPTKGF- 250 (357)
T ss_dssp CCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEEST--TEEEEEEEEEEETTTEE-
T ss_pred eccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCC--CeEEEEeCcCCCcccce-
Confidence 78899999999999999999999988877667778899999999 66666655433 34555654432211000
Q ss_pred ehhhhhhhccccccccceEEEEECCCCC-eEEeeeCCCeEEEEeeCCC
Q 024407 216 DKILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~lasgs~Dg~i~i~~~~~~ 262 (268)
....+.+|...|++++|+|+++ +|++|+.||.|++|+++..
T Consensus 251 ------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 251 ------ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp ------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred ------eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 0012337889999999999998 8999999999999998753
No 60
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.2e-29 Score=211.76 Aligned_cols=251 Identities=12% Similarity=0.025 Sum_probs=183.3
Q ss_pred CCCC----C---CEEEEeecCCcEEEeecCCCcE-----EEEEecC------CCceeeeee----cCCeE-EEEEcCCCc
Q 024407 2 FQAN----S---MTLITGSADQTAKLWNVETGAQ-----LFTFNFD------SPARSVDFA----VGDKL-AVITTDPFM 58 (268)
Q Consensus 2 fs~d----~---~~l~s~s~D~tv~~wd~~~~~~-----~~~~~~~------~~~~~~~~~----~~~~~-~~~~~~~~~ 58 (268)
|+|+ + ++|++++.|++|++||+.+++. ...+... .++.++.|+ +.+.. +++++.
T Consensus 70 ~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--- 146 (397)
T 1sq9_A 70 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV--- 146 (397)
T ss_dssp EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET---
T ss_pred EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC---
Confidence 6777 8 9999999999999999998875 6666533 789999999 87665 554432
Q ss_pred ccccceEeeeeee------CCCCCCCceEEEE-------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 024407 59 ELNSAIHVKRIAR------DPADQGGESVLIL-------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 125 (268)
Q Consensus 59 ~~~~~~~~~~~~~------~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 125 (268)
++.+.+|++.. .... .-.+...+ ..|...|+++.|+|++ .|++++.|+.|++||+++++.+..
T Consensus 147 --dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~ 222 (397)
T 1sq9_A 147 --KGTTYIWKFHPFADESNSLTL-NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN 222 (397)
T ss_dssp --TSCEEEEEEESSSSHHHHTTT-CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred --CCcEEEEeCCcccccccccee-eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEE
Confidence 34566666654 2111 11122244 4488999999999999 999999999999999999887766
Q ss_pred cccccCc---ccceEEEEEcCCCCEEEEeeCC---CcEEEEECCCcceeeeee--------------cCCceeEEEEccC
Q 024407 126 SDKETGH---KKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV--------------TERPVNAVTMSPL 185 (268)
Q Consensus 126 ~~~~~~h---~~~v~~v~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~--------------~~~~~~~~~~~~~ 185 (268)
+....+| ...|.+++|+|++.+|++++.| +.|++||+++++.+..+. +...+.++.|+|+
T Consensus 223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC
Confidence 5422237 8899999999999999999999 999999999988877765 4668899999998
Q ss_pred CCeEEEeecCCCceEEEeccCCCeeeeEeeehhh--hh-------hhccccccccceEEEEECCCC----------CeEE
Q 024407 186 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL--QE-------EIGGVKGHFGPINALAFNPDG----------KSFS 246 (268)
Q Consensus 186 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~-------~~~~~~~h~~~v~~~~~sp~~----------~~la 246 (268)
+..+++++. + ..+..||.+.+.....+..... .. .......|...|++++|+|++ ++|+
T Consensus 303 ~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 303 GETLCSAGW-D-GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC 380 (397)
T ss_dssp SSEEEEEET-T-SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred CCEEEEEeC-C-CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence 776665543 3 4577888777654433220000 00 000011238899999999998 7999
Q ss_pred eeeCCCeEEEEeeCC
Q 024407 247 SGGEDGYVRLHHFDP 261 (268)
Q Consensus 247 sgs~Dg~i~i~~~~~ 261 (268)
+|+.||.|++|+++.
T Consensus 381 s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 381 CVCLDRSIRWFREAG 395 (397)
T ss_dssp EEETTTEEEEEEEEC
T ss_pred EecCCCcEEEEEcCC
Confidence 999999999999875
No 61
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=1e-28 Score=225.63 Aligned_cols=234 Identities=22% Similarity=0.344 Sum_probs=189.1
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.||||++.|++|+.||+|++||+.+++.+..+. +..++.++.|+|.+..+++++. ++.+.+|++ .+++
T Consensus 20 ~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~------~~~~ 88 (814)
T 3mkq_A 20 DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-----DFRIRVFNY------NTGE 88 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-----TSEEEEEET------TTCC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC-----CCeEEEEEC------CCCc
Confidence 389999999999999999999999999888887 6788999999997765555442 345555554 3567
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeecccccCcccceEEEEEcC-CCCEEEEeeCCCcE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSA 157 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i 157 (268)
.+..+.+|.+.|+++.|+|++++|++++.||.|++||++++.. ...+ .+|..+|.+++|+| ++..+++++.|++|
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF---EGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE---ECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE---cCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 7888999999999999999999999999999999999988733 3333 36889999999999 88999999999999
Q ss_pred EEEECCCcceeeeeec--CCceeEEEEcc--CCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 158 KLWDARTLELIKTYVT--ERPVNAVTMSP--LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
++||+++++....+.. ...+..+.++| .+..+++++ .+ +.+..||.+.+... ..+.+|...|
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d-g~i~~~d~~~~~~~------------~~~~~~~~~v 231 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DD-LTIKIWDYQTKSCV------------ATLEGHMSNV 231 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TT-SEEEEEETTTTEEE------------EEEECCSSCE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CC-CEEEEEECCCCcEE------------EEEcCCCCCE
Confidence 9999988776555542 26788999998 655555443 33 45677776655432 2345688899
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+++|+|++++|++|+.||.|++|+....
T Consensus 232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 260 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (814)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999999999999999998753
No 62
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2e-29 Score=209.19 Aligned_cols=246 Identities=14% Similarity=0.202 Sum_probs=182.6
Q ss_pred CCCC----CCEEEEeecCCcEEEeecCCCcEEEEEe------cCCCceeeeeecC----CeEEEEEcCCCcccccceEee
Q 024407 2 FQAN----SMTLITGSADQTAKLWNVETGAQLFTFN------FDSPARSVDFAVG----DKLAVITTDPFMELNSAIHVK 67 (268)
Q Consensus 2 fs~d----~~~l~s~s~D~tv~~wd~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 67 (268)
|+|+ ...+++++.|++|++||+.+++.+..+. +...+..++|++. +.++++++. ++.+.+|
T Consensus 26 ~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----dg~i~v~ 100 (366)
T 3k26_A 26 FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS-----RGIIRII 100 (366)
T ss_dssp ECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET-----TCEEEEE
T ss_pred EecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC-----CCEEEEE
Confidence 6763 5567777778899999999887766654 3467899999987 444444432 2345555
Q ss_pred eeeeCCCCCCCceEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC
Q 024407 68 RIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 146 (268)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~ 146 (268)
++ .+++.+..+.+|..+|+++.|+| ++++|++++.||.|++||+++++....+....+|...|.+++|+|++.
T Consensus 101 d~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (366)
T 3k26_A 101 NP------ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 174 (366)
T ss_dssp CT------TTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS
T ss_pred Ec------hhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC
Confidence 43 34677888999999999999999 899999999999999999999887776643457999999999999999
Q ss_pred EEEEeeCCCcEEEEECCCcceeeeee-----------------------------cCCceeEEEEccCCCeEEEeecCCC
Q 024407 147 HFLTGSLDKSAKLWDARTLELIKTYV-----------------------------TERPVNAVTMSPLLDHVVLGGGQDA 197 (268)
Q Consensus 147 ~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (268)
+|++++.|+.|++||+++++.+..+. +...+.++.++ +..++++ +.+
T Consensus 175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~d- 250 (366)
T 3k26_A 175 KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK-SCE- 250 (366)
T ss_dssp EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE-CSS-
T ss_pred EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE-ecC-
Confidence 99999999999999999876543332 55678888888 3444443 333
Q ss_pred ceEEEeccCCCeeeeEeeehh--hhhhhccccccccceEEEEECCC--CCeEEeeeCCCeEEEEeeCCC
Q 024407 198 SAVTTTDHRAGKFEAKFFDKI--LQEEIGGVKGHFGPINALAFNPD--GKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 198 ~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~--~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+..||.+.+.......... ....+..+.+|...|++++|+|+ +++|++|+.||.|++|+++..
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 456677765443211110000 00113345678888999999999 999999999999999999865
No 63
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.9e-29 Score=210.89 Aligned_cols=247 Identities=15% Similarity=0.132 Sum_probs=162.8
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc---EEEE-EecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA---QLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
|+|++++|+|++.|++|++||+.+++ .... ..+..++..++|+|.+..++.++. ++.+.+|++.... .
T Consensus 63 ~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~---~ 134 (377)
T 3dwl_C 63 WAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-----ARVISVCYFEQEN---D 134 (377)
T ss_dssp ECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES-----SSCEEECCC--------
T ss_pred EeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec-----CCeEEEEEECCcc---c
Confidence 89999999999999999999999876 3333 346788999999997665444432 2344555443211 0
Q ss_pred CceEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---------------eeecccccCcccceEEEEE
Q 024407 78 GESVLILKG-PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL---------------LKESDKETGHKKTITSLAK 141 (268)
Q Consensus 78 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------~~~~~~~~~h~~~v~~v~~ 141 (268)
......+.+ |...|+++.|+|++++|++++.|+.|++||+++... -...... +|...|.+++|
T Consensus 135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 213 (377)
T 3dwl_C 135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF 213 (377)
T ss_dssp CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence 113455677 999999999999999999999999999999863220 1111122 68999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEECCCcce----eeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeee
Q 024407 142 AADGSHFLTGSLDKSAKLWDARTLEL----IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD 216 (268)
Q Consensus 142 s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 216 (268)
+|++.+|++++.|++|++||+++++. +..+. +...+.+++|+|++.. +++++.+... ..+....+......++
T Consensus 214 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~-~~~~~~~~~~~~~~~~ 291 (377)
T 3dwl_C 214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAI-VAAGYNYSPI-LLQGNESGWAHTRDLD 291 (377)
T ss_dssp CTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEE-EEEESSSSEE-EECCCC---CCSBCCC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCE-EEEEcCCcEE-EEEeCCCceEEEeeec
Confidence 99999999999999999999998876 55543 4557899999998654 4444544443 3332211100000000
Q ss_pred ----------------------------------hhhh-----hhhccccccccceEEEEECCCC-C---eEEeeeCCCe
Q 024407 217 ----------------------------------KILQ-----EEIGGVKGHFGPINALAFNPDG-K---SFSSGGEDGY 253 (268)
Q Consensus 217 ----------------------------------~~~~-----~~~~~~~~h~~~v~~~~~sp~~-~---~lasgs~Dg~ 253 (268)
.... ........|.+.|+++++.+.. . .|+|||.||.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~ 371 (377)
T 3dwl_C 292 AGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGR 371 (377)
T ss_dssp SCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSE
T ss_pred ccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCc
Confidence 0000 0111223499999999976644 3 5999999999
Q ss_pred EEEEee
Q 024407 254 VRLHHF 259 (268)
Q Consensus 254 i~i~~~ 259 (268)
|+||++
T Consensus 372 i~iWdl 377 (377)
T 3dwl_C 372 VVLWTL 377 (377)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999974
No 64
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.1e-28 Score=210.48 Aligned_cols=255 Identities=17% Similarity=0.247 Sum_probs=180.5
Q ss_pred CCCC-CCEEEEeecCCcEEEeecCC----------CcEEEEEe-cCCCceeeeeecCCe-EEEEEcCCCcccccceEeee
Q 024407 2 FQAN-SMTLITGSADQTAKLWNVET----------GAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKR 68 (268)
Q Consensus 2 fs~d-~~~l~s~s~D~tv~~wd~~~----------~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 68 (268)
|+|+ +.+|++++.||+|++||+.+ ......+. +..++.+++|++.+. .+++++. ++.+.+|+
T Consensus 136 ~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~vwd 210 (430)
T 2xyi_A 136 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD-----DHTICLWD 210 (430)
T ss_dssp EETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT-----TSCEEEEE
T ss_pred ECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC-----CCeEEEEe
Confidence 7886 78999999999999999986 45555554 677899999999765 5444432 33455555
Q ss_pred eeeCCCC-CCCceEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC
Q 024407 69 IARDPAD-QGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 146 (268)
Q Consensus 69 ~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~ 146 (268)
+...... ....+...+.+|...|.++.|+| ++..|++++.||.|++||++++...........|...|++++|+|++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 290 (430)
T 2xyi_A 211 INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290 (430)
T ss_dssp TTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCT
T ss_pred CCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCC
Confidence 4321100 00112345678999999999999 567899999999999999998732111112236899999999999987
Q ss_pred -EEEEeeCCCcEEEEECCC-cceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeee--hhhhh
Q 024407 147 -HFLTGSLDKSAKLWDART-LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD--KILQE 221 (268)
Q Consensus 147 -~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~ 221 (268)
.+++++.|++|++||+++ .+.+..+. +...+.++.|+|.+..++++++.++ .+..||...........+ ...++
T Consensus 291 ~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~ 369 (430)
T 2xyi_A 291 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPE 369 (430)
T ss_dssp TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-CCEEEEGGGTTCCCCHHHHHHCCTT
T ss_pred CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC-cEEEEeCCCCccccCccccccCCcc
Confidence 688999999999999998 44555554 5678999999999877666655543 355555443110000000 00012
Q ss_pred hhccccccccceEEEEECCCCC-eEEeeeCCCeEEEEeeCCC
Q 024407 222 EIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 222 ~~~~~~~h~~~v~~~~~sp~~~-~lasgs~Dg~i~i~~~~~~ 262 (268)
.+....+|...|.+++|+|+++ +|++++.||.|+||+++.+
T Consensus 370 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 370 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2234567888999999999999 8999999999999999865
No 65
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=9.8e-28 Score=216.18 Aligned_cols=234 Identities=18% Similarity=0.286 Sum_probs=179.8
Q ss_pred CCCC-CCEEEEeecCCcEEEeecCCCc-----EEEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 2 FQAN-SMTLITGSADQTAKLWNVETGA-----QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 2 fs~d-~~~l~s~s~D~tv~~wd~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
|+|+ +++|+|||.|++|++||+.+.. ....+ .|...+.++++++.+..++.++. ++.+.+|++
T Consensus 390 ~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~-----Dg~v~vwd~----- 459 (694)
T 3dm0_A 390 TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW-----DGELRLWDL----- 459 (694)
T ss_dssp CCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSEEEEEET-----
T ss_pred ecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC-----CCcEEEEEC-----
Confidence 6776 4789999999999999997532 23333 37788999999998776665542 345666654
Q ss_pred CCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC--CEEEEee
Q 024407 75 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG--SHFLTGS 152 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~~l~s~~ 152 (268)
.++..+..+.+|...|++++|+|++++|++|+.|++|++||..............+|...|.+++|+|++ ..+++++
T Consensus 460 -~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 460 -AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp -TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred -CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence 3456778899999999999999999999999999999999987654433333335799999999999987 5799999
Q ss_pred CCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 153 LDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 153 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
.|++|++||+++.++...+. +...+.+++++|++..+++++. + ..+..||.+.+.... .+. +..
T Consensus 539 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~-D-g~i~iwd~~~~~~~~------------~~~-~~~ 603 (694)
T 3dm0_A 539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK-D-GVVLLWDLAEGKKLY------------SLE-ANS 603 (694)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-T-SBCEEEETTTTEEEE------------CCB-CSS
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC-C-CeEEEEECCCCceEE------------Eec-CCC
Confidence 99999999999988777664 5567999999998776655543 3 346677776654321 122 335
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.|.+++|+|++.++++++ |+.|+||+++..
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 799999999998888766 667999998764
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1.2e-27 Score=199.23 Aligned_cols=247 Identities=19% Similarity=0.204 Sum_probs=179.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE---ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+|++++|++++.|++|++||+++++..... .+...+..+.|++.+..+++++. ++.+.+|++.... ..
T Consensus 60 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~---~~ 131 (372)
T 1k8k_C 60 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-----SRVISICYFEQEN---DW 131 (372)
T ss_dssp EETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-----TSSEEEEEEETTT---TE
T ss_pred EeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-----CCEEEEEEecCCC---cc
Confidence 7899999999999999999999888755443 36778999999997766555442 2345566554321 00
Q ss_pred c-eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC------------------CCceeeecccccCcccceEEE
Q 024407 79 E-SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE------------------TGKLLKESDKETGHKKTITSL 139 (268)
Q Consensus 79 ~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~h~~~v~~v 139 (268)
. ......+|...|+++.|+|++++|++++.||.|++||++ +++.+..+ .+|...|.++
T Consensus 132 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~ 208 (372)
T 1k8k_C 132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES---SSSCGWVHGV 208 (372)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC---CCCSSCEEEE
T ss_pred eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec---CCCCCeEEEE
Confidence 1 122235789999999999999999999999999999964 44444443 3688999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEECCCcceeeeeec-CCceeEEEEccCCCeEEEeecCCCceEEEeccCC--CeeeeE-ee
Q 024407 140 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA--GKFEAK-FF 215 (268)
Q Consensus 140 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~-~~ 215 (268)
+|+|++.+|++++.|+.|++||+++++.+..+.. ..++.+++|+|++. +++++.+. .+..|+... +.+... ..
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~d~--~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAGHDC--FPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE-EEEEETTS--SCEEEEEETTTTEEEECCCC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCC-EEEEEeCC--eEEEEEccCcCceEEEeecc
Confidence 9999999999999999999999999988877754 44789999999765 44444333 344555544 432110 00
Q ss_pred eh-------------------hhhhhh------ccc-cccccceEEEEEC-CCC---CeEEeeeCCCeEEEEeeCCC
Q 024407 216 DK-------------------ILQEEI------GGV-KGHFGPINALAFN-PDG---KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 216 ~~-------------------~~~~~~------~~~-~~h~~~v~~~~~s-p~~---~~lasgs~Dg~i~i~~~~~~ 262 (268)
+. ...... ..+ .+|...|++++|+ ++| ++|+||+.||.|++|+++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 00 000000 223 4899999999966 676 99999999999999998753
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.9e-29 Score=208.89 Aligned_cols=243 Identities=13% Similarity=0.197 Sum_probs=181.0
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCC----CcEEEEEe-cCCCceeeeeecC-CeEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVET----GAQLFTFN-FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~----~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
.|+|++++|++|+.|++|++||+.+ .+.+..+. +..++.++.|+|. ..+++.++. ++.+.+|++.....
T Consensus 74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~ 148 (416)
T 2pm9_A 74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN-----NGEIFIWDMNKCTE 148 (416)
T ss_dssp EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS-----SSCEEBCBTTTTSS
T ss_pred EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC-----CCeEEEEECCCCcc
Confidence 3899999999999999999999987 34555554 6788999999986 555444432 23455555433210
Q ss_pred CC---CCceEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeecccc---cCcccceEEEEEcCCC-C
Q 024407 75 DQ---GGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKE---TGHKKTITSLAKAADG-S 146 (268)
Q Consensus 75 ~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~s~~~-~ 146 (268)
.. .......+.+|...|+++.|+|+ +.+|++++.|+.|++||+++++.+..+... .+|...+.+++|+|++ .
T Consensus 149 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred ccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 00 00111224678999999999999 689999999999999999998876655421 2337899999999997 6
Q ss_pred EEEEeeCCC---cEEEEECCCc-ceeeeee--cCCceeEEEEcc-CCCeEEEeecCCCceEEEeccCCCeeeeEeeehhh
Q 024407 147 HFLTGSLDK---SAKLWDARTL-ELIKTYV--TERPVNAVTMSP-LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219 (268)
Q Consensus 147 ~l~s~~~d~---~i~iwd~~~~-~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 219 (268)
++++++.|+ .|++||+++. +.+..+. +...+.+++|+| .+..+++ ++.+ ..+..||.+.+..
T Consensus 229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s-~~~d-g~v~~wd~~~~~~--------- 297 (416)
T 2pm9_A 229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS-SGRD-NTVLLWNPESAEQ--------- 297 (416)
T ss_dssp EEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE-EESS-SEEEEECSSSCCE---------
T ss_pred EEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE-EeCC-CCEEEeeCCCCcc---------
Confidence 899999998 9999999986 4555554 567899999999 5544444 4444 3467777665543
Q ss_pred hhhhccccccccceEEEEECCCC-CeEEeeeCCCeEEEEeeCCC
Q 024407 220 QEEIGGVKGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 220 ~~~~~~~~~h~~~v~~~~~sp~~-~~lasgs~Dg~i~i~~~~~~ 262 (268)
+..+.+|...|++++|+|++ ++|++++.||.|++|+++..
T Consensus 298 ---~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 298 ---LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp ---EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred ---ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 22345788899999999999 89999999999999999865
No 68
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.8e-28 Score=203.02 Aligned_cols=245 Identities=18% Similarity=0.212 Sum_probs=176.9
Q ss_pred CCCC---CCEEEEeecCCcEEEeecCCCc-EEEEEe-cCCCceeeee------ecCCeEEEEEcCCCcccccceEeeeee
Q 024407 2 FQAN---SMTLITGSADQTAKLWNVETGA-QLFTFN-FDSPARSVDF------AVGDKLAVITTDPFMELNSAIHVKRIA 70 (268)
Q Consensus 2 fs~d---~~~l~s~s~D~tv~~wd~~~~~-~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (268)
|+|+ +++|++|+.|++|++||+.+++ .+..+. +..++..+.+ ++.+..++.++. ++.+.+|++.
T Consensus 73 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~-----d~~i~vwd~~ 147 (357)
T 3i2n_A 73 FGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR-----DGTVKVWDPR 147 (357)
T ss_dssp CTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET-----TSCEEEECTT
T ss_pred EcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC-----CCeEEEEeCC
Confidence 7888 6999999999999999999887 666665 6777888855 455555444432 3345555443
Q ss_pred eCCCCCCCceEEEEecCCC----CeEEEE----EcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEc
Q 024407 71 RDPADQGGESVLILKGPQG----RINRAV----WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 142 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~----~v~~~~----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s 142 (268)
.. ..++..+..|.+ .+.++. |+|+++++++++.|+.|++||+++++..... .|...|.+++|+
T Consensus 148 ~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~~ 218 (357)
T 3i2n_A 148 QK-----DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET----NIKNGVCSLEFD 218 (357)
T ss_dssp SC-----SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEES
T ss_pred CC-----CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec----CCCCceEEEEcC
Confidence 21 124455655544 788888 7899999999999999999999998764432 478899999999
Q ss_pred C---CCCEEEEeeCCCcEEEEECCCcceeeee------ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeE
Q 024407 143 A---DGSHFLTGSLDKSAKLWDARTLELIKTY------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK 213 (268)
Q Consensus 143 ~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 213 (268)
| ++.++++++.|+.|++||+++++.+..+ .+...+.++.++|.+..++++++.++ .+..||.+.+.....
T Consensus 219 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 219 RKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG-GLHLWKYEYPIQRSK 297 (357)
T ss_dssp CSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEEEECCSCC--
T ss_pred CCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-cEEEeecCCCccccc
Confidence 9 9999999999999999999987665544 35668999999998764555555543 566676543321110
Q ss_pred eeeh-------hhhhhhccccccccceEEEEECCCCCeEE-eeeCCCeEEEEeeCC
Q 024407 214 FFDK-------ILQEEIGGVKGHFGPINALAFNPDGKSFS-SGGEDGYVRLHHFDP 261 (268)
Q Consensus 214 ~~~~-------~~~~~~~~~~~h~~~v~~~~~sp~~~~la-sgs~Dg~i~i~~~~~ 261 (268)
.... .....+..+.+|...|++++|+|++++|+ +|+.||.|+||++..
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 0000 00012344667889999999999999998 899999999999874
No 69
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=4.3e-28 Score=203.85 Aligned_cols=252 Identities=17% Similarity=0.205 Sum_probs=182.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc------EEEEEe-cCCCceeeeeecC----C---eEEEEEcCCCcccccceEee
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA------QLFTFN-FDSPARSVDFAVG----D---KLAVITTDPFMELNSAIHVK 67 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~------~~~~~~-~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~ 67 (268)
|+| ++|++|+.|++|++||+.+++ ....+. +..++.++.|++. + ..++.++. ++.+.+|
T Consensus 24 ~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~-----dg~i~iw 96 (397)
T 1sq9_A 24 ACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF-----SGDLLFY 96 (397)
T ss_dssp ECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET-----TSCEEEE
T ss_pred ecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC-----CCCEEEE
Confidence 667 799999999999999999887 455544 6788999999997 6 55554432 3456666
Q ss_pred eeeeCCCCCCCceEEEEecC-----CCCeEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------Cceee-----ec
Q 024407 68 RIARDPADQGGESVLILKGP-----QGRINRAVWG----PLNRT-IISAGEDAIVRIWDTET------GKLLK-----ES 126 (268)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~s~~~dg~i~iwd~~~------~~~~~-----~~ 126 (268)
++..... ........+.+| ...|.++.|+ |++++ |++++.||.|++||+++ ++.+. .+
T Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (397)
T 1sq9_A 97 RITREDE-TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 175 (397)
T ss_dssp EEEECTT-TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred EccCCcc-cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCccee
Confidence 6654311 111126677888 5899999999 99999 99999999999999988 55443 32
Q ss_pred cc----ccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeec-------CCceeEEEEccCCCeEEEeecC
Q 024407 127 DK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-------ERPVNAVTMSPLLDHVVLGGGQ 195 (268)
Q Consensus 127 ~~----~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 195 (268)
.. ...|...|.+++|+|++ .+++++.|+.|++||+++++.+..+.. ...+.++.|+|++..+++++.+
T Consensus 176 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d 254 (397)
T 1sq9_A 176 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254 (397)
T ss_dssp EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred eeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecC
Confidence 10 03478899999999999 999999999999999999888887765 6789999999987766655433
Q ss_pred CC-ceEEEeccCCCeeeeEeeehhh-hhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 196 DA-SAVTTTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 196 ~~-~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+. ..+..||.+.+.....+..... .........|...|.+++|+|++++|++|+.||.|++|+++..
T Consensus 255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 11 4677777766543322211000 0000001118889999999999999999999999999998754
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.1e-28 Score=200.66 Aligned_cols=234 Identities=14% Similarity=0.157 Sum_probs=174.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc----EEEEEecCCCceeeeeecCCe-EEEEEcCCCcccccceEeeee-eeCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA----QLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRI-ARDPAD 75 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 75 (268)
|+|++++|++++.|++|++||+.+++ ......+..++.++.|++.+. .+++++. ++.+.+|++ ..
T Consensus 19 ~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~---- 89 (342)
T 1yfq_A 19 IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV-----QGEILKVDLIGS---- 89 (342)
T ss_dssp EEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET-----TSCEEEECSSSS----
T ss_pred EcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC-----CCeEEEEEeccC----
Confidence 89999999999999999999999887 555567888999999999777 5554432 234555554 22
Q ss_pred CCCceEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceeeecccccCcccceEEEEEcCC
Q 024407 76 QGGESVLILKG--PQGRINRAVWGPLNRTIISAGEDAIVRIWDTET---------GKLLKESDKETGHKKTITSLAKAAD 144 (268)
Q Consensus 76 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~h~~~v~~v~~s~~ 144 (268)
.....+.+ |...|+++.|+| ++.|++++.|+.|++||+++ ++.+..+. |...+.+++++++
T Consensus 90 ---~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 90 ---PSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----VKNKIFTMDTNSS 161 (342)
T ss_dssp ---SSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS----SCCCEEEEEECSS
T ss_pred ---CceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe----eCCceEEEEecCC
Confidence 12366778 999999999999 99999999999999999987 55444332 7889999999988
Q ss_pred CCEEEEeeCCCcEEEEECCC-ccee---eeeecCCceeEEEEcc-CCCeEEEeecCCCceEEEeccCCCeeeeEeeehhh
Q 024407 145 GSHFLTGSLDKSAKLWDART-LELI---KTYVTERPVNAVTMSP-LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219 (268)
Q Consensus 145 ~~~l~s~~~d~~i~iwd~~~-~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 219 (268)
+ +++++.|+.|++||+++ .... ....+...+.++.++| ++..+++++.++ .+..|+.....- ...
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~------~~~ 231 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG--RVAVEFFDDQGD------DYN 231 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS--EEEEEECCTTCC------STT
T ss_pred c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC--cEEEEEEcCCCc------ccc
Confidence 7 99999999999999998 5432 1223456789999999 877666655433 344544332200 000
Q ss_pred hhhhcccccc---------ccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 220 QEEIGGVKGH---------FGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 220 ~~~~~~~~~h---------~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
......+..| ...|++++|+|++++|++|+.||.|++|+++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 0111122333 458999999999999999999999999998854
No 71
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=9e-28 Score=228.69 Aligned_cols=244 Identities=17% Similarity=0.312 Sum_probs=185.2
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.||||+++|+||+.|++|++||+.+++.+..+. +...+.+++|+|++..+++++. ++.+.+|++ .+++
T Consensus 622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----d~~v~vwd~------~~~~ 690 (1249)
T 3sfz_A 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-----DKKVKIWDS------ATGK 690 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEET------TTCC
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC-----CCeEEEEEC------CCCc
Confidence 389999999999999999999999999988886 6788999999998766655542 345666654 3567
Q ss_pred eEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 80 SVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
.+..+.+|...|.++.|+|+ +..+++|+.|+.|++||+++++....+. +|...|++++|+|++.++++++.|++|
T Consensus 691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF---GHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC---CCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec---CCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 88899999999999999995 4588999999999999999988766554 799999999999999999999999999
Q ss_pred EEEECCCcceeeeeecC--------------CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee------------
Q 024407 158 KLWDARTLELIKTYVTE--------------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE------------ 211 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------------ 211 (268)
++||+++++....+... ..+.+++|+|++..+++++. ..+..||...+...
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~---~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK---NKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET---TEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC---CcEEEEEecCCCceeEEcCCCCCceE
Confidence 99999887655443211 13445556665554444331 12333332222111
Q ss_pred -------------------eEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 212 -------------------AKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 212 -------------------~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
.++|+......+..+.+|...|++++|+|++++|++++.||.|++|++..
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 12233323333445678999999999999999999999999999998753
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.2e-27 Score=198.81 Aligned_cols=231 Identities=16% Similarity=0.302 Sum_probs=183.1
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEec--CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
++++..+++++.|++|++||+++++....+.. ...+.+++|+|.+..+++++. ++.+.+|++ .+++.
T Consensus 100 ~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iwd~------~~~~~ 168 (401)
T 4aez_A 100 DWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG-----NGLVDIYDV------ESQTK 168 (401)
T ss_dssp EECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET-----TSCEEEEET------TTCCE
T ss_pred eecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC-----CCeEEEEEC------cCCeE
Confidence 33456789999999999999999988777764 677999999997766555442 234555554 34567
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
+..+.+|...|.++.|+ ++.|++++.||.|++||++.. +....+ .+|...|.+++|+|++.+|++++.|+.|++
T Consensus 169 ~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~d~~v~i 243 (401)
T 4aez_A 169 LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTL---QGHSSEVCGLAWRSDGLQLASGGNDNVVQI 243 (401)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEE---cCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Confidence 88889999999999994 579999999999999999854 333333 369999999999999999999999999999
Q ss_pred EECCCcceeeeee-cCCceeEEEEccCCCeEEEeec-CCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 160 WDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGG-QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 160 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
||+++++.+..+. +...+.+++|+|.+..++++++ .....+..||.+.+.....+ .|...|.+++
T Consensus 244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-------------~~~~~v~~~~ 310 (401)
T 4aez_A 244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-------------DAGSQVTSLI 310 (401)
T ss_dssp EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-------------ECSSCEEEEE
T ss_pred ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-------------eCCCcEEEEE
Confidence 9999988777664 5668899999998877776653 34456788887765543221 2446799999
Q ss_pred ECCCCCeEEe--eeCCCeEEEEeeCCC
Q 024407 238 FNPDGKSFSS--GGEDGYVRLHHFDPD 262 (268)
Q Consensus 238 ~sp~~~~las--gs~Dg~i~i~~~~~~ 262 (268)
|+|++++|++ |+.||.|++|+++..
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred ECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 9999999998 558999999998864
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=1.4e-27 Score=205.01 Aligned_cols=230 Identities=16% Similarity=0.282 Sum_probs=182.6
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
++++++|+||+.|++|++||+.+++.+..+. +..++.++++++++.++.++.+ +.+.+|++ .+++.+
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~d------g~i~vwd~------~~~~~~ 196 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD------RTVRVWDI------KKGCCT 196 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETT------SCEEEEET------TTTEEE
T ss_pred EECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCC------CCEEEEEC------CCCcEE
Confidence 4577899999999999999999999988886 6788999999988755555544 34555554 355678
Q ss_pred EEEecCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEECCCCceeee--------------------cccccCcccceEEE
Q 024407 82 LILKGPQGRINRAVWG--PLNRTIISAGEDAIVRIWDTETGKLLKE--------------------SDKETGHKKTITSL 139 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------~~~~~~h~~~v~~v 139 (268)
..+.+|...|.++.|+ |+++++++|+.|+.|++||+++++.... .....+|...+.++
T Consensus 197 ~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 276 (464)
T 3v7d_B 197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276 (464)
T ss_dssp EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE
T ss_pred EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE
Confidence 8899999999999998 5778999999999999999988654321 11234688888776
Q ss_pred EEcCCCCEEEEeeCCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehh
Q 024407 140 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 218 (268)
Q Consensus 140 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 218 (268)
++++.++++++.|++|++||+++++++..+. +...+.++.++|.+..+++++.+ ..+..||.+.+..
T Consensus 277 --~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d--g~i~vwd~~~~~~-------- 344 (464)
T 3v7d_B 277 --SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD--TTIRIWDLENGEL-------- 344 (464)
T ss_dssp --EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT--SCEEEEETTTTEE--------
T ss_pred --cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCcE--------
Confidence 5788999999999999999999998887765 46678999999987766655433 3466777665543
Q ss_pred hhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 219 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 219 ~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+..+.+|...|.+++|+ +++|++|+.||.|++|+++..
T Consensus 345 ----~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 345 ----MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp ----EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred ----EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCC
Confidence 23356788999999998 479999999999999999865
No 74
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3e-28 Score=197.61 Aligned_cols=213 Identities=11% Similarity=0.071 Sum_probs=145.7
Q ss_pred CCCCC----CCEEEEeecCCcEEEeecCCCcEEEEEe--cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 1 MFQAN----SMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 1 ~fs~d----~~~l~s~s~D~tv~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
+|||| ++.+++++.+ +++|++.+++.+.... ++..+..+++++++
T Consensus 118 a~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--------------------------- 168 (356)
T 2w18_A 118 FCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--------------------------- 168 (356)
T ss_dssp CC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTS---------------------------
T ss_pred EECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCC---------------------------
Confidence 58999 9999998855 8899998888776643 45556666655433
Q ss_pred CCCCceEEEEecCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEE---
Q 024407 75 DQGGESVLILKGPQGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF--- 148 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l--- 148 (268)
+.+..+.+|...++.++|+| +++.|++++.|++||+||+++++.++.+.....+...+.+++|+|++.++
T Consensus 169 ----~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~ 244 (356)
T 2w18_A 169 ----GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVL 244 (356)
T ss_dssp ----CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEE
T ss_pred ----ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEe
Confidence 33445678999999999999 77999999999999999999999888775222234467888999999876
Q ss_pred ---------EEeeCCCcEEEEECCCcceeeeee----cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEee
Q 024407 149 ---------LTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 215 (268)
Q Consensus 149 ---------~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 215 (268)
++++.|++|++||+++++.+..+. .......+..+..+ ..+++++.+ ..+..||...+..
T Consensus 245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg-~~lASgS~D-gTIkIWDl~tGk~----- 317 (356)
T 2w18_A 245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKD-HCAAAILTS-GTIAIWDLLLGQC----- 317 (356)
T ss_dssp C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEET-TEEEEEETT-SCEEEEETTTCSE-----
T ss_pred ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCC-CEEEEEcCC-CcEEEEECCCCcE-----
Confidence 567889999999999988765442 11111112222212 234444444 3566777666553
Q ss_pred ehhhhhhhccccccccceE-EEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 216 DKILQEEIGGVKGHFGPIN-ALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~-~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+.++++|...+. +++|||||++||||+.|++||||++.
T Consensus 318 -------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 318 -------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp -------EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred -------EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 334567876655 68999999999999999999999863
No 75
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=4.8e-27 Score=193.25 Aligned_cols=198 Identities=25% Similarity=0.379 Sum_probs=153.9
Q ss_pred CCCC-CCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQAN-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d-~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|+ +++|+|||.|++||+||+.+.+.. .+.+
T Consensus 46 ~sp~~~~~l~S~s~D~~i~vWd~~~~~~~-----------------------------------------------~~~~ 78 (340)
T 4aow_A 46 TTPQFPDMILSASRDKTIIMWKLTRDETN-----------------------------------------------YGIP 78 (340)
T ss_dssp ECTTCTTEEEEEETTSCEEEEEECCSSSC-----------------------------------------------SEEE
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCCCCcc-----------------------------------------------ccee
Confidence 7887 679999999999999998754321 1123
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
...+++|...|+++.|+|++++|++++.|+.|++|+........... .+...+....+++++..|++++.|+.+++|
T Consensus 79 ~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec---CCCCceeEEEEeecCccceeecCCCeEEEE
Confidence 45578999999999999999999999999999999998876654433 466778888999999999999999999999
Q ss_pred ECCCcceeeee--ecCCceeEEEEccCCCeE-EEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 161 DARTLELIKTY--VTERPVNAVTMSPLLDHV-VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 161 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
|++........ .+...+..+.+++..... +++++.+ ..+..||.+.+... ..+.+|...|++++
T Consensus 156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~~------------~~~~~h~~~v~~~~ 222 (340)
T 4aow_A 156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD-KLVKVWNLANCKLK------------TNHIGHTGYLNTVT 222 (340)
T ss_dssp CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT-SCEEEEETTTTEEE------------EEECCCSSCEEEEE
T ss_pred EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC-CEEEEEECCCCcee------------eEecCCCCcEEEEE
Confidence 99865433222 234567888888765443 3333333 34667776655433 23457889999999
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|+|++++|++|+.||.|++|+++..
T Consensus 223 ~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 223 VSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ECCCCCEEEEEeCCCeEEEEEeccC
Confidence 9999999999999999999998754
No 76
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=9.7e-29 Score=235.35 Aligned_cols=228 Identities=19% Similarity=0.260 Sum_probs=190.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+||++.|+|++.|++|++||+.+++......+...+..+.++++..++..+.++ .+.+|++ .+++..
T Consensus 1011 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg------~v~vwd~------~~~~~~ 1078 (1249)
T 3sfz_A 1011 FTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDG------TVKVWNV------ITGRIE 1078 (1249)
T ss_dssp ECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSS------EEEEEET------TTTCCC
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCC------cEEEEEC------CCCcee
Confidence 8999999999999999999999999887666678889999999988877666543 4455544 345567
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
..+.+|.+.|+++.|+|+++++++++.|+.|++||+.+++....+ .+|...|++++|+|++.+|++++.||+|++||
T Consensus 1079 ~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l---~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL---KGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC---CCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee---ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 778999999999999999999999999999999999988766544 37999999999999999999999999999999
Q ss_pred CCCcceeeee----------ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 162 ARTLELIKTY----------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 162 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
+.+++.+..+ .+...+..++|+|++..+++++ +.+..||...+.. +..+.+|..
T Consensus 1156 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~----g~v~vwd~~~g~~------------~~~~~~~~~ 1219 (1249)
T 3sfz_A 1156 VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG----GYLKWWNVATGDS------------SQTFYTNGT 1219 (1249)
T ss_dssp SSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES----SSEEEBCSSSCBC------------CCCCCCSSC
T ss_pred CCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC----CeEEEEECCCCce------------eeeeeccCC
Confidence 9998776654 2455789999999988776653 3577777665442 334556788
Q ss_pred ceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 232 PINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.|.+++|+|++++|++++.||.|++|++.
T Consensus 1220 ~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1220 NLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp CCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred cccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 89999999999999999999999999875
No 77
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=3.8e-27 Score=199.01 Aligned_cols=246 Identities=17% Similarity=0.210 Sum_probs=179.3
Q ss_pred CCCCCCE-EEEeecCCcEEEeecCCCcE----EEEE-ecCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 2 FQANSMT-LITGSADQTAKLWNVETGAQ----LFTF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 2 fs~d~~~-l~s~s~D~tv~~wd~~~~~~----~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
|+|+... +++++.||+|++||+.+... ...+ .|..++.+++|+| ++.++++++. ++.+.+|++.....
T Consensus 42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~-----dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 42 VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE-----DCTVMVWEIPDGGL 116 (402)
T ss_dssp ECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEET-----TSEEEEEECCTTCC
T ss_pred ECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeC-----CCeEEEEEccCCCC
Confidence 4555544 44689999999999965422 2222 3678899999999 6665555442 34566776643211
Q ss_pred -CCCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee
Q 024407 75 -DQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS 152 (268)
Q Consensus 75 -~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~ 152 (268)
....+++..+.+|...|+++.|+|++ ++|++++.|+.|++||+++++....+. ..+|...|.+++|+|++.+|++++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-PDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-TTTCCSCEEEEEECTTSSCEEEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-cCCCCCceEEEEECCCCCEEEEEe
Confidence 11114667889999999999999998 699999999999999999988766552 136899999999999999999999
Q ss_pred CCCcEEEEECCCcceeeee-e-cCC-ceeEEEEccCCCeEEEeec-CCCceEEEeccCCCeeeeEeeehhhhhhhccccc
Q 024407 153 LDKSAKLWDARTLELIKTY-V-TER-PVNAVTMSPLLDHVVLGGG-QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 228 (268)
Q Consensus 153 ~d~~i~iwd~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
.|+.|++||+++++.+..+ . +.. .+..+.|+|++..++++.. .....+..||.+.+....... ...
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~----------~~~ 265 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ----------ELD 265 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE----------ECC
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE----------ecc
Confidence 9999999999999887776 2 222 3788999997654444321 334567777766543211111 113
Q ss_pred cccceEEEEECCCCCeEE-eeeCCCeEEEEeeCCCc
Q 024407 229 HFGPINALAFNPDGKSFS-SGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~la-sgs~Dg~i~i~~~~~~~ 263 (268)
|...+.+++|+|++++|+ +|+.||.|++|+++.+.
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 556799999999999986 56689999999998764
No 78
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.9e-27 Score=190.41 Aligned_cols=227 Identities=21% Similarity=0.313 Sum_probs=173.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
| |++++|++|+.|++|++||+.+++....+. +..++..++|+|.+..+++++. ++.+.+|++.. ....++
T Consensus 26 ~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~~~~~---~~~~~~ 96 (313)
T 3odt_A 26 A-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK-----DTMINGVPLFA---TSGEDP 96 (313)
T ss_dssp E-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET-----TSCEEEEETTC---CTTSCC
T ss_pred e-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC-----CCeEEEEEeee---cCCCCc
Confidence 5 789999999999999999999888776665 5788999999997766555442 23444454432 233456
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~i 159 (268)
+..+.+|...|.++.| +++++++++.|+.|++|| .++....+ ..|...+.++++.+ ++..+++++.|+.|++
T Consensus 97 ~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 97 LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL---QAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp -CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE---ECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec---ccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 6778899999999999 578999999999999999 44444433 36889999999987 8999999999999999
Q ss_pred EECCCcceeeeee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 160 WDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 160 wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
||.+. .+..+. +...+..+.++|.+. +++ ++.+ ..+..||.+.+... ..+.+|...|++++
T Consensus 170 ~d~~~--~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~~d-g~i~i~d~~~~~~~------------~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 170 WQNDK--VIKTFSGIHNDVVRHLAVVDDGH-FIS-CSND-GLIKLVDMHTGDVL------------RTYEGHESFVYCIK 232 (313)
T ss_dssp EETTE--EEEEECSSCSSCEEEEEEEETTE-EEE-EETT-SEEEEEETTTCCEE------------EEEECCSSCEEEEE
T ss_pred EecCc--eEEEEeccCcccEEEEEEcCCCe-EEE-ccCC-CeEEEEECCchhhh------------hhhhcCCceEEEEE
Confidence 99543 333333 566789999999765 443 3333 35677776654432 23457888999999
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|+|++ .|++|+.||.|++|+++..
T Consensus 233 ~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 233 LLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp ECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EecCC-CEEEEecCCEEEEEECCCC
Confidence 99999 5899999999999998765
No 79
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-27 Score=216.35 Aligned_cols=243 Identities=18% Similarity=0.208 Sum_probs=180.7
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCC--CcEEEEEe-cCCCceeeeeecC--CeE-EEEEcCCCcccccceEeeeeeeCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVET--GAQLFTFN-FDSPARSVDFAVG--DKL-AVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~--~~~~~~~~-~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
.|+|++++|+||+.||+|++||+.+ ++....+. |..+|.++.|++. +.. +.++.+ +.+.+|++...
T Consensus 16 ~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D------g~I~vwd~~~~-- 87 (753)
T 3jro_A 16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENG-- 87 (753)
T ss_dssp CCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT------SCEEEEEEETT--
T ss_pred EECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC------CeEEEEECCCC--
Confidence 4899999999999999999999984 44555554 6788999999875 444 444433 45566665421
Q ss_pred CCCCceEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC---------
Q 024407 75 DQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--------- 143 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--------- 143 (268)
....+..+.+|...|+++.|+|+ ++.+++|+.||.|++||++++...... ...+|...|.+++|+|
T Consensus 88 --~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 88 --RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp --EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE-EEECCSSCEEEEEECCCC-------
T ss_pred --cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee-EeecCCCceEEEEecCccccccccc
Confidence 11256778899999999999999 999999999999999999987433222 2246899999999999
Q ss_pred ----CCCEEEEeeCCCcEEEEECCCcc----eeeee-ecCCceeEEEEccCC--CeEEEeecCCCceEEEeccCCCeeee
Q 024407 144 ----DGSHFLTGSLDKSAKLWDARTLE----LIKTY-VTERPVNAVTMSPLL--DHVVLGGGQDASAVTTTDHRAGKFEA 212 (268)
Q Consensus 144 ----~~~~l~s~~~d~~i~iwd~~~~~----~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~d~~~~~~~~ 212 (268)
++..+++++.||+|++||++++. .+..+ .+...+.+++|+|.+ ...+++++.++ .+..||.+.+....
T Consensus 165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-~I~iwd~~~~~~~~ 243 (753)
T 3jro_A 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-TCIIWTQDNEQGPW 243 (753)
T ss_dssp --CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS-CEEEEEESSSSSCC
T ss_pred ccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC-EEEEecCCCCCCcc
Confidence 58999999999999999998763 33333 246689999999983 34444444443 45666655432110
Q ss_pred EeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.........|...|++++|+|++++|++|+.||.|++|+++.+
T Consensus 244 -------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 244 -------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp -------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred -------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 0012223457889999999999999999999999999999853
No 80
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2.7e-27 Score=199.67 Aligned_cols=235 Identities=13% Similarity=0.096 Sum_probs=158.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE------ecCCCceeeeeec--------CCeEEEEEcCCCcccccceEee
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF------NFDSPARSVDFAV--------GDKLAVITTDPFMELNSAIHVK 67 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 67 (268)
|++++++|++|+.|++||+||++++...... .|...|..++|+| ++++++.++ .+..+.+|
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s-----~D~tv~~W 171 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG-----DDCTLIIW 171 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE-----TTSEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE-----CCCeEEEE
Confidence 5677889999999999999999988664432 2678899999987 334444433 24567777
Q ss_pred eeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecc-------------------
Q 024407 68 RIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESD------------------- 127 (268)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~------------------- 127 (268)
++. .+.++..+.+|..+|.+++|+|++. +|++++.|++|++||+++++......
T Consensus 172 d~~------~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 172 RLT------DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EEE------TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred ECC------CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 764 2356677788999999999999885 79999999999999998865432111
Q ss_pred ---cccCcccceEEEEEc-CCCCEEEEeeCCCcEEEEECCCcceeeeeec-------------------CCceeEEEEcc
Q 024407 128 ---KETGHKKTITSLAKA-ADGSHFLTGSLDKSAKLWDARTLELIKTYVT-------------------ERPVNAVTMSP 184 (268)
Q Consensus 128 ---~~~~h~~~v~~v~~s-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~~~~~~~~~ 184 (268)
...+|...+.++.|+ +++..+++++.|+++++||++.++....+.. ........++|
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence 113677889999887 8999999999999999999987654433211 01112223444
Q ss_pred CCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 185 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
..+..+++++...+.+..||...+.. ...+.+|..+|.+++|||||++||+++.|| +.+|++.
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~------------~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDS------------NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTC------------CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcE------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 33333443344345566777655432 223346778999999999999999999766 5566654
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2.1e-27 Score=200.55 Aligned_cols=236 Identities=18% Similarity=0.261 Sum_probs=178.3
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCCC-------cEEEEEe-cCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeee
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVETG-------AQLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIAR 71 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~~-------~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 71 (268)
|+| ++++|+||+.|++|++||+.++ +.+..+. +..++..++|+|.+ .+++.++. ++.+.+|++
T Consensus 89 ~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~-----dg~i~iwd~-- 161 (402)
T 2aq5_A 89 WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-----DNVILVWDV-- 161 (402)
T ss_dssp ECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET-----TSCEEEEET--
T ss_pred eCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC-----CCEEEEEEC--
Confidence 789 9999999999999999999887 4455554 67889999999975 34444332 334555654
Q ss_pred CCCCCCCceEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccc-eEEEEEcCCCCEE
Q 024407 72 DPADQGGESVLIL--KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHF 148 (268)
Q Consensus 72 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~v~~s~~~~~l 148 (268)
.+++.+..+ .+|...|+++.|+|++++|++++.|+.|++||+++++.+..+. .+|... +..+.|++++.+|
T Consensus 162 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 162 ----GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD--RPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp ----TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CSSCSSSCCEEEECSTTEEE
T ss_pred ----CCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--cCCCCCcceEEEEcCCCcEE
Confidence 345677788 7899999999999999999999999999999999988776552 246654 8899999999999
Q ss_pred EEe---eCCCcEEEEECCCcce-e--eeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhh
Q 024407 149 LTG---SLDKSAKLWDARTLEL-I--KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 222 (268)
Q Consensus 149 ~s~---~~d~~i~iwd~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 222 (268)
+++ +.|+.|++||+++.+. + ..+.....+..+.++|++..++++++.++ .+..||...+......
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg-~i~i~d~~~~~~~~~~-------- 306 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS-SIRYFEITSEAPFLHY-------- 306 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS-CEEEEEECSSTTCEEE--------
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC-eEEEEEecCCCcceEe--------
Confidence 998 7999999999998654 2 22234567889999999887776665443 4666665544310111
Q ss_pred hccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 223 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 223 ~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+... .|...|.+++|+|++.++++ .|+.+++|++..+
T Consensus 307 l~~~-~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 307 LSMF-SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EEEE-CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred eccc-ccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 0111 14578999999999999875 4669999998764
No 82
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=1.2e-26 Score=193.91 Aligned_cols=244 Identities=13% Similarity=0.105 Sum_probs=160.8
Q ss_pred CCCCCCEEEEeecCC-------cEEEeecCCCcE--------EEEEe---cCCCceeeeeecCCeEEEEEc-CCCcc---
Q 024407 2 FQANSMTLITGSADQ-------TAKLWNVETGAQ--------LFTFN---FDSPARSVDFAVGDKLAVITT-DPFME--- 59 (268)
Q Consensus 2 fs~d~~~l~s~s~D~-------tv~~wd~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 59 (268)
|+||+++|++||.|. +|++|++..... ...+. +...+.++.+ ....++.+. +....
T Consensus 22 fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~~~~~l~s 99 (365)
T 4h5i_A 22 FLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNENSTKITQ 99 (365)
T ss_dssp EEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCCCHHHHHH
T ss_pred EeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECCCccEEEE
Confidence 899999999998765 499999875432 11222 2233445544 333334333 22221
Q ss_pred --cccceEeeeeeeCCCCCCCceEEEE-----ecCCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceeeeccccc
Q 024407 60 --LNSAIHVKRIARDPADQGGESVLIL-----KGPQGRINRAVWGPLNRTIIS--AGEDAIVRIWDTETGKLLKESDKET 130 (268)
Q Consensus 60 --~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~ 130 (268)
.+..+++|.+.... ...+..... ..+...+..++|+|||+++++ ++.|++|++||+++++.+..+.
T Consensus 100 ~~~d~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~--- 174 (365)
T 4h5i_A 100 GKGNKHLRKFKYDKVN--DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--- 174 (365)
T ss_dssp TSCCCCEEEEEEETTT--TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE---
T ss_pred ecCCCcEEEEEecCCC--ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC---
Confidence 23334555443221 111111111 123455889999999998764 4579999999999988776653
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeee---ecCCceeEEEEccCCCeEEEeecCCC--ceEEEecc
Q 024407 131 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY---VTERPVNAVTMSPLLDHVVLGGGQDA--SAVTTTDH 205 (268)
Q Consensus 131 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~ 205 (268)
|...|.+++|+||+.++++++.| .+.+|+..+++.+... .+...+.++.|+|++..+++++.+.. ..+..|+.
T Consensus 175 -~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~ 252 (365)
T 4h5i_A 175 -TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI 252 (365)
T ss_dssp -CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred -CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence 67889999999999999998854 5667777766654432 23456889999998777766654433 24555654
Q ss_pred CCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 206 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
........ ....+.+|...|++++|||||++||+|+.|++|+||+++..
T Consensus 253 ~~~~~~~~--------~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 253 KSGNTSVL--------RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp ETTEEEEE--------EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred ccceecce--------eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence 43332111 12235678889999999999999999999999999998754
No 83
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-26 Score=186.29 Aligned_cols=226 Identities=20% Similarity=0.271 Sum_probs=173.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCC---cEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETG---AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
|+|++++|++++.|+.|++|++.+. +....+. +..++..+.+ .+..++..+.++ .+.+|+ .
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~------~i~~~d--------~ 131 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDK------TAKVWK--------E 131 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTS------EEEEEE--------T
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCC------CEEEEc--------C
Confidence 8899999999999999999998764 3344443 5677888888 345555544443 344443 3
Q ss_pred CceEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 78 GESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
.+....+.+|..++.++.|.| +++++++++.|+.|++||.. +....+. ..|...+.++++++++. +++++.|+.
T Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~dg~ 206 (313)
T 3odt_A 132 GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFS--GIHNDVVRHLAVVDDGH-FISCSNDGL 206 (313)
T ss_dssp TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEEC--SSCSSCEEEEEEEETTE-EEEEETTSE
T ss_pred CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEe--ccCcccEEEEEEcCCCe-EEEccCCCe
Confidence 456778889999999999988 88999999999999999943 3333332 23888999999999988 999999999
Q ss_pred EEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 157 AKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
|++||+++++.+..+. +...+.++.++|++ .++++ +.+ ..+..||.+.+.... .+..|...|.+
T Consensus 207 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~-~~d-g~v~iwd~~~~~~~~------------~~~~~~~~i~~ 271 (313)
T 3odt_A 207 IKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSC-GED-RTVRIWSKENGSLKQ------------VITLPAISIWS 271 (313)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEE-ETT-SEEEEECTTTCCEEE------------EEECSSSCEEE
T ss_pred EEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEE-ecC-CEEEEEECCCCceeE------------EEeccCceEEE
Confidence 9999999998887775 56689999999987 44443 333 457777776654322 23467778999
Q ss_pred EEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 236 LAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 236 ~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
++|+|+++ +++|+.||.|++|+++.+.
T Consensus 272 ~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 272 VDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred EEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 99999998 5679999999999998763
No 84
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-25 Score=185.11 Aligned_cols=235 Identities=18% Similarity=0.255 Sum_probs=182.4
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.|+|++++|++|+.|++|++||+.+++.+..+. +..++..++|++.+..++.++. ++.+.+|++ .+++
T Consensus 39 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i~iwd~------~~~~ 107 (369)
T 3zwl_B 39 KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA-----DYSIKLWDV------SNGQ 107 (369)
T ss_dssp EECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TTEEEEEET------TTCC
T ss_pred EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEEC------CCCc
Confidence 389999999999999999999999999988887 6788999999997665554432 345555554 3445
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeecc--------cccCccc--ceEEEEEcCC
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESD--------KETGHKK--TITSLAKAAD 144 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~--------~~~~h~~--~v~~v~~s~~ 144 (268)
.+..+. +...|.++.|+|+++++++++.+ +.|++||++.++....+. ....|.. .+.+++|+|+
T Consensus 108 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 108 CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186 (369)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence 666666 88899999999999999999999 999999998764321111 1123444 8999999999
Q ss_pred CCEEEEeeCCCcEEEEECCC-cceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhh
Q 024407 145 GSHFLTGSLDKSAKLWDART-LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 222 (268)
Q Consensus 145 ~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 222 (268)
+.+|++++.|+.|++||+++ .+.+..+. +...+.++.++|++..+++++.+ ..+..||.+.+.....+
T Consensus 187 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~-------- 256 (369)
T 3zwl_B 187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD--TNSFLVDVSTLQVLKKY-------- 256 (369)
T ss_dssp GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT--SEEEEEETTTCCEEEEE--------
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC--ceEEEEECCCCceeeee--------
Confidence 99999999999999999998 56666554 45689999999987766655433 35677777665543221
Q ss_pred hccccccccceEEEEECCCCCeEEeeeCCC--------------eEEEEeeCCC
Q 024407 223 IGGVKGHFGPINALAFNPDGKSFSSGGEDG--------------YVRLHHFDPD 262 (268)
Q Consensus 223 ~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg--------------~i~i~~~~~~ 262 (268)
.+...+.+++|+|+++++++++.++ .+++|+....
T Consensus 257 -----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 257 -----ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp -----ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred -----cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 1456799999999999999999998 7888887654
No 85
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=1.6e-25 Score=192.27 Aligned_cols=233 Identities=19% Similarity=0.330 Sum_probs=177.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeec--CCeEEEEEcCCCcccccceEeeeeeeCCCC---
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPAD--- 75 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 75 (268)
|+|++ .|+||+.|++|++||+++++.+..+. +..++.++++.+ +...+++++. ++.+.+|++......
T Consensus 170 ~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 170 YAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR-----DNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEET-----TSCEEEEECCCCCCC---
T ss_pred EcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcC-----CCcEEEeeCCCCcccccc
Confidence 67887 99999999999999999999888887 678899999985 4444444332 334455554432110
Q ss_pred --------------CCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEE
Q 024407 76 --------------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 141 (268)
Q Consensus 76 --------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~ 141 (268)
.....+..+.+|...|.++ +|+++++++|+.|+.|++||+++++.+..+. +|...|.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~ 318 (464)
T 3v7d_B 244 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIY 318 (464)
T ss_dssp ---CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEE
T ss_pred cccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCEEEEEE
Confidence 0112366788999999877 6778999999999999999999988776553 68999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh
Q 024407 142 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220 (268)
Q Consensus 142 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 220 (268)
+|++.++++++.|++|++||+++++++..+. +...+.++.+++ ..++++ +.+ +.+..||...+......
T Consensus 319 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~-s~d-g~v~vwd~~~~~~~~~~------ 388 (464)
T 3v7d_B 319 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSA-AAD-GSIRGWDANDYSRKFSY------ 388 (464)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS--SEEEEE-ETT-SEEEEEETTTCCEEEEE------
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC--CEEEEE-eCC-CcEEEEECCCCceeeee------
Confidence 9999999999999999999999998888774 456788888874 444444 444 34677777654432211
Q ss_pred hhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 221 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 221 ~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
.|...+..++|+|+++++++|+ ||.|++|+++...
T Consensus 389 -------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 389 -------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp -------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred -------cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 2445677889999999999999 9999999998653
No 86
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.5e-25 Score=189.14 Aligned_cols=245 Identities=11% Similarity=0.022 Sum_probs=179.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc---EEEEEecCC------------------------------------------
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA---QLFTFNFDS------------------------------------------ 36 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~---~~~~~~~~~------------------------------------------ 36 (268)
|+|||++|+++ .++.|++||+++++ .+..+....
T Consensus 12 ~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (450)
T 2vdu_B 12 TSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAK 90 (450)
T ss_dssp ECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------------
T ss_pred ecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCcc
Confidence 79999966655 67899999999998 555554221
Q ss_pred -------------CceeeeeecCCeEE-EEEcCCCcccccceEeeeeeeCCCCCCCceEEEEe--cCCCCeEEEEEcCCC
Q 024407 37 -------------PARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLN 100 (268)
Q Consensus 37 -------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~ 100 (268)
.+.+++|+|.+..+ ++++ .++.+.+|++.. .+++.+..+. +|...|+++.|+|++
T Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-----~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 91 VPSPGLGAPPIYSYIRNLRLTSDESRLIACAD-----SDKSLLVFDVDK----TSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ---------CCCCCEEEEEECTTSSEEEEEEG-----GGTEEEEEEECS----SSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccCCCCCCCccCCceEEEEEcCCCCEEEEEEC-----CCCeEEEEECcC----CCCceeeeeecccCCCCceEEEEcCCC
Confidence 47888899887764 4432 245667777641 1334555565 677899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceee-ecccccCcccceEEEEEcCC---CCEEEEeeCCCcEEEEECCCcceeeeee--cC
Q 024407 101 RTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLWDARTLELIKTYV--TE 174 (268)
Q Consensus 101 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~ 174 (268)
++|++|+.||.|++|++.+++... ......+|...|.+++|+|+ +.+|++++.|++|++||+++++++..+. +.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 999999999999999998876543 22233468999999999999 9999999999999999999988776643 56
Q ss_pred CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhc-------------cccccccceEEEEECCC
Q 024407 175 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG-------------GVKGHFGPINALAFNPD 241 (268)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-------------~~~~h~~~v~~~~~sp~ 241 (268)
..+.+++|+ ++..+++++ .+ ..+..||.+.+.....+-.......+. ....+...|.+++|+|+
T Consensus 242 ~~v~~~~~s-d~~~l~s~~-~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAG-GD-DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp SCEEEEEEC-STTEEEEEE-SS-SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CceEEEEEC-CCCEEEEEe-CC-CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 688999999 766665554 33 467888888776543322111000000 00022356899999999
Q ss_pred CCeEEeee-CCCeEEEEee
Q 024407 242 GKSFSSGG-EDGYVRLHHF 259 (268)
Q Consensus 242 ~~~lasgs-~Dg~i~i~~~ 259 (268)
+++|++++ .|+.|+||++
T Consensus 319 ~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSEEEEEETTCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEe
Confidence 99999998 8999999999
No 87
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=9.8e-26 Score=192.39 Aligned_cols=225 Identities=19% Similarity=0.330 Sum_probs=174.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
+++|++.|++|+.|++|++||+.+++....+. +..++.++.+ .+..++.++.+ +.+.+|++ .+++.
T Consensus 139 ~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~d------g~i~vwd~------~~~~~ 205 (435)
T 1p22_A 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSD------STVRVWDV------NTGEM 205 (435)
T ss_dssp EECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETT------SCEEEEES------SSCCE
T ss_pred EEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCC------CeEEEEEC------CCCcE
Confidence 35688999999999999999999999888876 6677888887 34444444433 34555554 34567
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+..+.+|...|.++.|++ +.+++|+.||.|++||+++++.........+|...|.++++ ++.++++++.|++|++|
T Consensus 206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW 281 (435)
T ss_dssp EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence 888999999999999975 69999999999999999987765333334579999999998 78899999999999999
Q ss_pred ECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 161 DARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 161 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
|+++++.+..+. +...+.++.++ +..++++ +.+ +.+..||.+.+.. +..+.+|...|.+++|
T Consensus 282 d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g-~~d-g~i~iwd~~~~~~------------~~~~~~h~~~v~~~~~- 344 (435)
T 1p22_A 282 NTSTCEFVRTLNGHKRGIACLQYR--DRLVVSG-SSD-NTIRLWDIECGAC------------LRVLEGHEELVRCIRF- 344 (435)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEE--TTEEEEE-ETT-SCEEEEETTTCCE------------EEEECCCSSCEEEEEC-
T ss_pred ECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEE-eCC-CeEEEEECCCCCE------------EEEEeCCcCcEEEEEe-
Confidence 999998887775 44567777775 3444444 333 3466777665543 2334678899999998
Q ss_pred CCCCeEEeeeCCCeEEEEeeCC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~ 261 (268)
++++|++|+.||.|++|++..
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCC
Confidence 788999999999999999854
No 88
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.1e-26 Score=195.60 Aligned_cols=238 Identities=13% Similarity=0.139 Sum_probs=175.7
Q ss_pred CCCCCCEE-EEeecCCcEEEeecC--CCcEEEEEe---cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 2 FQANSMTL-ITGSADQTAKLWNVE--TGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 2 fs~d~~~l-~s~s~D~tv~~wd~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
|+||++.| ++|+.|++|++||+. +++.+..+. +...+.+++|+|.+..+++++. +..+..+++...
T Consensus 110 ~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----~g~v~~~~~~~~--- 181 (450)
T 2vdu_B 110 LTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-----FGDVYSIDINSI--- 181 (450)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTSC---
T ss_pred EcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-----CCcEEEEecCCc---
Confidence 89999996 999999999999999 787777663 5677899999998766665532 223333333221
Q ss_pred CCCc-eEEEEecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEe
Q 024407 76 QGGE-SVLILKGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 151 (268)
Q Consensus 76 ~~~~-~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 151 (268)
.... +...+.+|...|+++.|+|+ +++|++|+.|+.|++||+++++.+..+. .+|...|.+++|+ ++.+|+++
T Consensus 182 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 182 PEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL--FGHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp CCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC--CCCSSCEEEEEEC-STTEEEEE
T ss_pred ccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee--cCCCCceEEEEEC-CCCEEEEE
Confidence 1111 23356789999999999999 8999999999999999999887665432 3699999999999 99999999
Q ss_pred eCCCcEEEEECCCcceeeeeec--------------------------CCceeEEEEccCCCeEEEeecCCCceEEEecc
Q 024407 152 SLDKSAKLWDARTLELIKTYVT--------------------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 205 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 205 (268)
+.|++|++||+++++++..+.. ...+..+.++|++..+++++..+ ..+..|+.
T Consensus 259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-~~i~iw~~ 337 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-KCIIILEM 337 (450)
T ss_dssp ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC-SEEEEEEE
T ss_pred eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC-CeEEEEEe
Confidence 9999999999999987776642 23577889999887777665333 45666665
Q ss_pred --CCC-eeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeC------CCeEEEEeeCCC
Q 024407 206 --RAG-KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE------DGYVRLHHFDPD 262 (268)
Q Consensus 206 --~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~------Dg~i~i~~~~~~ 262 (268)
..+ .+. .+..+..| ..|.+++|+|++.+++.++. +..|++|.++.+
T Consensus 338 ~~~~~~~l~----------~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 338 SEKQKGDLA----------LKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CSSSTTCEE----------EEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred ccCCCCcee----------eccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 222 111 11224455 68999999996555555554 556899998765
No 89
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=3.9e-26 Score=194.83 Aligned_cols=240 Identities=15% Similarity=0.162 Sum_probs=167.4
Q ss_pred CCCCC--CEEEEeecCCcEEEeecCCCcEE---------------------------------------EEE--ecCCCc
Q 024407 2 FQANS--MTLITGSADQTAKLWNVETGAQL---------------------------------------FTF--NFDSPA 38 (268)
Q Consensus 2 fs~d~--~~l~s~s~D~tv~~wd~~~~~~~---------------------------------------~~~--~~~~~~ 38 (268)
|+|++ ..|++++.|++|++||+.++... ..+ .+..++
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 78888 79999999999999998764431 122 367789
Q ss_pred eeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE-------EEecCCCCeEEEEEcCCC-CEEEEEeCCC
Q 024407 39 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-------ILKGPQGRINRAVWGPLN-RTIISAGEDA 110 (268)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~s~~~dg 110 (268)
.+++|+|.+..++.+.+ +.+.+|++... ..... .+.+|...|+++.|+|++ ++|++|+.||
T Consensus 181 ~~~~~~~~~~~l~s~~d------~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 181 NSISINSDYETYLSADD------LRINLWHLEIT-----DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp CEEEECTTSSEEEEECS------SEEEEEETTEE-----EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred EEEEEcCCCCEEEEeCC------CeEEEEECCCC-----CceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence 99999998777666543 34455544311 11222 245899999999999998 8999999999
Q ss_pred cEEEEECCCCce----eeecccccCccc------------ceEEEEEcCCCCEEEEeeCCCcEEEEECCC-cceeeeeec
Q 024407 111 IVRIWDTETGKL----LKESDKETGHKK------------TITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYVT 173 (268)
Q Consensus 111 ~i~iwd~~~~~~----~~~~~~~~~h~~------------~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~ 173 (268)
.|++||+++++. ...+ .+|.. .|.+++|+|++.+|++++. ++|++||+++ ++++..+..
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLF---EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEE---CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEES
T ss_pred eEEEEECcCCccccceeeEe---ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeec
Confidence 999999998775 3333 24544 8999999999999999999 9999999997 776666643
Q ss_pred CCc----------------eeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhh----------------
Q 024407 174 ERP----------------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE---------------- 221 (268)
Q Consensus 174 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---------------- 221 (268)
... +..++|+|++..++++ +.+ ..+..||...+.............
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~-s~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTG-SYN-NFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKR 403 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEE-CST-TEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCC
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEe-ccC-CEEEEEEcCCCcceeeeecccccccccccCCccccccCCc
Confidence 322 2238999987766544 333 457788877665432111100000
Q ss_pred ---hh-ccccccccceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 222 ---EI-GGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 222 ---~~-~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
.. .....+...|.+++|+|++++||+|+.|+ +.+|.-
T Consensus 404 ~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 404 KKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 00 00112345789999999999999998875 777754
No 90
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=3.1e-25 Score=180.99 Aligned_cols=202 Identities=22% Similarity=0.378 Sum_probs=161.7
Q ss_pred cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 024407 34 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 113 (268)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 113 (268)
|..+|..++|+|.+..++.++. ++.+.+|.. ..++....+.+|...|.++.|+|++++|++++.|+.|+
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~-----dg~i~iw~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSA-----DKLIKIWGA------YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEET-----TSCEEEEET------TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cCCcEEEEEECCCCCEEEEeeC-----CCeEEEEeC------CCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 6788999999997766555432 234455543 34566778899999999999999999999999999999
Q ss_pred EEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee-cCCceeEEEEccCCCeEEEe
Q 024407 114 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 114 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 192 (268)
+||+++++.+..+. +|...|.+++|+|++.+|++++.|++|++||+++++.+..+. +..++..+.++|++..++++
T Consensus 91 vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 91 IWDVSSGKCLKTLK---GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEETTTCCEEEEEE---CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 99999988776554 689999999999999999999999999999999988877765 45678999999987766555
Q ss_pred ecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 193 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 193 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+. + ..+..||.+.+.....+ ...+...+.+++|+|++++|++|+.||.|++|+++..
T Consensus 168 ~~-d-~~i~~wd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 168 SY-D-GLCRIWDTASGQCLKTL-----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224 (312)
T ss_dssp ET-T-SCEEEEETTTCCEEEEE-----------CCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred eC-C-CcEEEEECCCCceeeEE-----------eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 43 3 35677787765533222 1235567999999999999999999999999998754
No 91
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=1.3e-25 Score=191.67 Aligned_cols=233 Identities=23% Similarity=0.341 Sum_probs=168.5
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
.++++|++|+.||+|++||+.+++.+..+. +...+..+.+.+ ..++..+.+ +.+.+|++... .......
T Consensus 181 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~d------g~i~vwd~~~~---~~~~~~~ 250 (435)
T 1p22_A 181 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKD------RSIAVWDMASP---TDITLRR 250 (435)
T ss_dssp CCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-TEEEEEETT------SCEEEEECSSS---SCCEEEE
T ss_pred ECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCC------CcEEEEeCCCC---CCceeee
Confidence 378899999999999999999999888876 567788888864 344444443 34555655332 1112336
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEEC
Q 024407 83 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~ 162 (268)
.+.+|...|+++.| +++++++|+.||.|++||+++++.+..+. +|...|.++++ ++.++++++.|++|++||+
T Consensus 251 ~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 251 VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN---GHKRGIACLQY--RDRLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred EecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc---CCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC
Confidence 67899999999999 67899999999999999999988776654 68899999988 4789999999999999999
Q ss_pred CCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC
Q 024407 163 RTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241 (268)
Q Consensus 163 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 241 (268)
++++++..+. +...+.++.+. +..++++ +.++ .+..||.+.+..... ......+..+.+|...|++++| +
T Consensus 324 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~sg-~~dg-~i~vwd~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~--~ 394 (435)
T 1p22_A 324 ECGACLRVLEGHEELVRCIRFD--NKRIVSG-AYDG-KIKVWDLVAALDPRA---PAGTLCLRTLVEHSGRVFRLQF--D 394 (435)
T ss_dssp TTCCEEEEECCCSSCEEEEECC--SSEEEEE-ETTS-CEEEEEHHHHTSTTS---CTTTTEEEEECCCSSCCCCEEE--C
T ss_pred CCCCEEEEEeCCcCcEEEEEec--CCEEEEE-eCCC-cEEEEECCCCCCccc---cccchheeeccCCCCCeEEEEe--C
Confidence 9998887775 45567888773 3444444 4332 345555322110000 0000023456789999999999 7
Q ss_pred CCeEEeeeCCCeEEEEeeCCC
Q 024407 242 GKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 242 ~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+++|++|+.||+|++|++.++
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp SSCEEECCSSSEEEEEC----
T ss_pred CCEEEEEeCCCEEEEEECCCC
Confidence 789999999999999999765
No 92
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=4.3e-26 Score=189.10 Aligned_cols=231 Identities=16% Similarity=0.265 Sum_probs=165.8
Q ss_pred CCCC---CCEEEEeecCCcEEEeecCC-CcEE-EEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 2 FQAN---SMTLITGSADQTAKLWNVET-GAQL-FTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 2 fs~d---~~~l~s~s~D~tv~~wd~~~-~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
|+|+ +++|++|+.|++|++||+++ +... ..+ .+..++..+.|+|.+..+++++. ++.+.+|++.
T Consensus 47 ~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~v~iwd~~----- 116 (368)
T 3mmy_A 47 FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC-----DKTAKMWDLS----- 116 (368)
T ss_dssp ECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT-----
T ss_pred EcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC-----CCcEEEEEcC-----
Confidence 7888 59999999999999999987 5554 334 36888999999997765555432 3455566543
Q ss_pred CCCceEEEEecCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEECCCCceeeecccc------------------------
Q 024407 76 QGGESVLILKGPQGRINRAVW--GPLNRTIISAGEDAIVRIWDTETGKLLKESDKE------------------------ 129 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------------ 129 (268)
+++ ...+.+|...|+++.| +|++++|++++.||.|++||+++++.+..+...
T Consensus 117 -~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (368)
T 3mmy_A 117 -SNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIV 194 (368)
T ss_dssp -TTE-EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEE
T ss_pred -CCC-ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEE
Confidence 223 3346789999999999 899999999999999999999987655433210
Q ss_pred --------------cCcccceEEEEEcCCCCE----EEEeeCCCcEEEEECCCc---ceeeeeecCC-------------
Q 024407 130 --------------TGHKKTITSLAKAADGSH----FLTGSLDKSAKLWDARTL---ELIKTYVTER------------- 175 (268)
Q Consensus 130 --------------~~h~~~v~~v~~s~~~~~----l~s~~~d~~i~iwd~~~~---~~~~~~~~~~------------- 175 (268)
..+...+..+.+.++... +++++.|+.|++||++.. +.+..+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (368)
T 3mmy_A 195 YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIY 274 (368)
T ss_dssp EECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEEC
T ss_pred EEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccccc
Confidence 011233444555444443 999999999999999876 3333333222
Q ss_pred ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEE
Q 024407 176 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR 255 (268)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~ 255 (268)
.+.+++++|++..+++++.+ +.+..||...+.. +..+.+|...|++++|+|++++||+|+.|+..+
T Consensus 275 ~v~~~~~sp~~~~l~s~~~d--g~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 275 AVNGIAFHPVHGTLATVGSD--GRFSFWDKDARTK------------LKTSEQLDQPISACCFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp CEEEEEECTTTCCEEEEETT--SCEEEEETTTTEE------------EEECCCCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred ceEEEEEecCCCEEEEEccC--CeEEEEECCCCcE------------EEEecCCCCCceEEEECCCCCeEEEEecccccc
Confidence 58899999987766655433 3466677665443 233567889999999999999999999998655
Q ss_pred EEe
Q 024407 256 LHH 258 (268)
Q Consensus 256 i~~ 258 (268)
.|+
T Consensus 341 ~~~ 343 (368)
T 3mmy_A 341 GHE 343 (368)
T ss_dssp CGG
T ss_pred ccc
Confidence 544
No 93
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.95 E-value=1.6e-25 Score=185.58 Aligned_cols=209 Identities=20% Similarity=0.289 Sum_probs=152.2
Q ss_pred EEEEe-cCC-CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE-EEEecCCCCeEEEEEcCCCCEEEE
Q 024407 29 LFTFN-FDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRTIIS 105 (268)
Q Consensus 29 ~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s 105 (268)
+..+. |.. .+..++|+|.+.+++.++. ++.+.+|++... ..... ....+|...|++++|+|++++|++
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~-----D~~i~iw~~~~~----~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s 78 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGG-----DRRIRIWGTEGD----SWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEET-----TSCEEEEEEETT----EEEEEEEECSSCSSCEEEEEECTTSSEEEE
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcC-----CCeEEEEEcCCC----cceeeeeeccccCCcEEEEEECCCCCEEEE
Confidence 34443 444 7889999997766555432 334555654321 00111 223689999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce---eeee-ecCCceeEEE
Q 024407 106 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL---IKTY-VTERPVNAVT 181 (268)
Q Consensus 106 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~-~~~~~~~~~~ 181 (268)
|+.|+.|++||+.++.... +....+|...|.+++|+|++.+|++++.|++|++||++..+. +..+ .+...+..+.
T Consensus 79 ~s~D~~v~iw~~~~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 79 ASFDATTCIWKKNQDDFEC-VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp EETTSCEEEEEECCC-EEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred EECCCcEEEEEccCCCeEE-EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 9999999999998764321 122347999999999999999999999999999999987543 3333 2456789999
Q ss_pred EccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 182 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
|+|++..+++++.+. .+..||.+.+... ....+.+|...|++++|+|++++||+|+.||+|+||+.
T Consensus 158 ~~p~~~~l~s~s~d~--~i~~w~~~~~~~~----------~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 158 WHPSQELLASASYDD--TVKLYREEEDDWV----------CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp ECSSSSCEEEEETTS--CEEEEEEETTEEE----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEEeCCC--cEEEEEecCCCEE----------EEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 999877666554433 3555665443321 12245689999999999999999999999999999986
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=1.6e-25 Score=198.12 Aligned_cols=235 Identities=19% Similarity=0.287 Sum_probs=184.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCC----cEEEEEe-cCCC-ceeeeeec--CCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETG----AQLFTFN-FDSP-ARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~----~~~~~~~-~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
||||+++|++++ |+.|++||++++ +....+. +... +.+++|+| ++..+++++. ++.+.+|++....
T Consensus 26 ~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~-----dg~v~vw~~~~~~ 99 (615)
T 1pgu_A 26 YDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE-----SGKVIVWGWTFDK 99 (615)
T ss_dssp EETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET-----TSEEEEEEEEEEG
T ss_pred ECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecC-----CCEEEEEeCCCCc
Confidence 899999999998 889999999988 7777776 6777 99999999 7776665542 3456666664210
Q ss_pred C--CCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-
Q 024407 74 A--DQGGESVLILKGPQGRINRAVWGPLNRTIISAGED----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS- 146 (268)
Q Consensus 74 ~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~- 146 (268)
. ....+....+.+|..+|.++.|+|++++|++++.+ +.|++|| +++....+ .+|...|.+++|+|++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~---~~~~~~v~~~~~~~~~~~ 174 (615)
T 1pgu_A 100 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEV---SGHSQRINACHLKQSRPM 174 (615)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEEC---CSCSSCEEEEEECSSSSC
T ss_pred ccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceee---ecCCccEEEEEECCCCCc
Confidence 0 00124566788999999999999999999999988 7898988 44544444 36999999999999998
Q ss_pred EEEEeeCCCcEEEEECCCcceeeeee-cCC---ceeEEEEccC-CCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhh
Q 024407 147 HFLTGSLDKSAKLWDARTLELIKTYV-TER---PVNAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE 221 (268)
Q Consensus 147 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~---~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 221 (268)
.+++++.|+.|++||+++++.+..+. +.. .+.++.|+|+ +..+++++.+ ..+..||.+.+....
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~--------- 243 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD--RKISCFDGKSGEFLK--------- 243 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT--CCEEEEETTTCCEEE---------
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC--CeEEEEECCCCCEeE---------
Confidence 79999999999999999988887775 444 6899999998 6666655443 346677766554322
Q ss_pred hhccc-c---ccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 222 EIGGV-K---GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 222 ~~~~~-~---~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+ . +|...|.+++|+ ++++|++++.||.|++|+++..
T Consensus 244 ---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 244 ---YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp ---ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred ---EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 22 3 688899999999 9999999999999999998854
No 95
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.6e-25 Score=181.80 Aligned_cols=210 Identities=17% Similarity=0.206 Sum_probs=152.1
Q ss_pred cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCc
Q 024407 34 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAI 111 (268)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~ 111 (268)
|...|..++|++.+..++.++. ++.+.+|++.. ...+.+..+.+|.++|+++.|+|+ +++|++|+.|++
T Consensus 8 h~~~V~~~~~s~~g~~las~s~-----D~~v~iw~~~~----~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSS-----DKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEET-----TSCEEEEEBCS----SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred CcCceEEEEECCCCCEEEEEeC-----CCEEEEEecCC----CCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 5678899999997665554432 34556665532 123456788999999999999864 889999999999
Q ss_pred EEEEECCCCceeeecccccCcccceEEEEEcCC--CCEEEEeeCCCcEEEEECCCccee--ee-eecCCceeEEEEccCC
Q 024407 112 VRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELI--KT-YVTERPVNAVTMSPLL 186 (268)
Q Consensus 112 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~--~~-~~~~~~~~~~~~~~~~ 186 (268)
|++||+++++... +....+|...|.+++|+|+ +.+|++++.|++|++||+++.... .. ..+...+.++.|+|..
T Consensus 79 v~iWd~~~~~~~~-~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 79 VMIWKEENGRWSQ-IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEEEBSSSCBCC-CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred EEEEEcCCCceEE-EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence 9999998874221 1122468999999999997 889999999999999999875321 11 2355678999999863
Q ss_pred ------------CeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC---CeEEeeeCC
Q 024407 187 ------------DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG---KSFSSGGED 251 (268)
Q Consensus 187 ------------~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~---~~lasgs~D 251 (268)
...+++++.++ .+..||.+.+..... ....+.+|...|.+++|+|++ ++||||+.|
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~-~v~lwd~~~~~~~~~--------~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYV--------LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp ------------CCEEEEEETTS-CEEEEEEETTTTEEE--------EEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ccccccCCCCCCcceEEEEcCCC-cEEEEEEcCCCceEE--------EEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 23444444443 456666543321000 123457899999999999985 889999999
Q ss_pred CeEEEEeeCCC
Q 024407 252 GYVRLHHFDPD 262 (268)
Q Consensus 252 g~i~i~~~~~~ 262 (268)
++|+||+++.+
T Consensus 229 ~~v~iWd~~~~ 239 (297)
T 2pm7_B 229 RTCIIWTQDNE 239 (297)
T ss_dssp SCEEEEEESST
T ss_pred CcEEEEEeCCC
Confidence 99999998764
No 96
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.5e-26 Score=209.28 Aligned_cols=240 Identities=11% Similarity=0.109 Sum_probs=167.4
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEE----EEE--------ecCCCceeeeeecCCeEEEEEcCCCcccccceEeee
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQL----FTF--------NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (268)
.|+||+++|+|||.|++||+||++++... ... .+...+.+++|+|+++.+++++. ++.+.+|+
T Consensus 442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~-----DgtV~lwd 516 (902)
T 2oaj_A 442 LPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE-----TGDVVLFK 516 (902)
T ss_dssp CCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET-----TSCEEEEE
T ss_pred cccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec-----CcEEEEEE
Confidence 38999999999999999999999877421 111 34567999999998766555442 33445555
Q ss_pred eeeCCC---------------------------------------CCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 024407 69 IARDPA---------------------------------------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 109 (268)
Q Consensus 69 ~~~~~~---------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 109 (268)
+..... ..+.+++..+.+|.++|++++|+|+| +|++|+.|
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D 595 (902)
T 2oaj_A 517 YEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAA 595 (902)
T ss_dssp EEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETT
T ss_pred ecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCC
Confidence 443210 00013577889999999999999999 99999999
Q ss_pred CcEEEEECCCCceee--eccccc-CcccceEEEEEc-----CCC---CEEEEeeCCCcEEEEEC---CCcceeeeeec--
Q 024407 110 AIVRIWDTETGKLLK--ESDKET-GHKKTITSLAKA-----ADG---SHFLTGSLDKSAKLWDA---RTLELIKTYVT-- 173 (268)
Q Consensus 110 g~i~iwd~~~~~~~~--~~~~~~-~h~~~v~~v~~s-----~~~---~~l~s~~~d~~i~iwd~---~~~~~~~~~~~-- 173 (268)
++|++||++++..+. .+.... +|...|++++|+ ||| .+|++++.|++|++||+ .++++...+..
T Consensus 596 ~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 596 GSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDIT 675 (902)
T ss_dssp SEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEE
T ss_pred CcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCce
Confidence 999999998876553 222233 799999999999 885 79999999999999999 67776555432
Q ss_pred ----CCceeEEE-EccC---------------------CCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccc
Q 024407 174 ----ERPVNAVT-MSPL---------------------LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 227 (268)
Q Consensus 174 ----~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 227 (268)
..++..+. ++.. ...++++ +.. .+..|+...+....+ ..
T Consensus 676 ~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~~~--~ir~~~~~~~k~~~k------------~~ 740 (902)
T 2oaj_A 676 NVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-GFD--DIRLITLGKSKSTHK------------GF 740 (902)
T ss_dssp ECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-CSS--EEEEECTTCCCEEEE------------EC
T ss_pred ecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-ecc--ceEEEeCccccceee------------Ec
Confidence 23444444 4311 1223333 322 355555554433222 22
Q ss_pred ccccceEEE---E------ECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 228 GHFGPINAL---A------FNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 228 ~h~~~v~~~---~------~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+|.-.+.++ . |++++..|+++++||+|++|.+..
T Consensus 741 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~ 783 (902)
T 2oaj_A 741 KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPD 783 (902)
T ss_dssp SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTT
T ss_pred ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcc
Confidence 344445554 6 788999999999999999999874
No 97
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=3.3e-25 Score=196.12 Aligned_cols=236 Identities=15% Similarity=0.160 Sum_probs=183.1
Q ss_pred CCC--CCCEEEEeecCCcEEEeecCCC--------cEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeee
Q 024407 2 FQA--NSMTLITGSADQTAKLWNVETG--------AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA 70 (268)
Q Consensus 2 fs~--d~~~l~s~s~D~tv~~wd~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (268)
|+| |+++|++|+.|++|++||+.++ +....+. +..++..++|+|.+..+++++.... ....+.+|+
T Consensus 72 ~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d-- 148 (615)
T 1pgu_A 72 FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD-NFGVFISWD-- 148 (615)
T ss_dssp ECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS-CSEEEEETT--
T ss_pred ECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC-CccEEEEEE--
Confidence 889 9999999999999999999754 4455555 6788999999998876665543210 011222222
Q ss_pred eCCCCCCCceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCccc---ceEEEEEcCC-C
Q 024407 71 RDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAAD-G 145 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~-~ 145 (268)
.++.+..+.+|...|+++.|+|+++ .+++++.|+.|++||+++++....+. +|.. .|.+++|+|+ +
T Consensus 149 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~ 219 (615)
T 1pgu_A 149 ------SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---THHKQGSFVRDVEFSPDSG 219 (615)
T ss_dssp ------TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC---SSSCTTCCEEEEEECSTTC
T ss_pred ------CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec---ccCCCCceEEEEEECCCCC
Confidence 3457788899999999999999998 89999999999999999987766554 5777 9999999999 9
Q ss_pred CEEEEeeCCCcEEEEECCCcceeeee-----ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh
Q 024407 146 SHFLTGSLDKSAKLWDARTLELIKTY-----VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220 (268)
Q Consensus 146 ~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 220 (268)
.+|++++.|+.|++||+++++.+..+ .+...+.++.++ .+..+++++ .+ ..+..||.+.+.....+-..
T Consensus 220 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d-~~i~~wd~~~~~~~~~~~~~--- 293 (615)
T 1pgu_A 220 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG-AD-ATIRVWDVTTSKCVQKWTLD--- 293 (615)
T ss_dssp CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE-TT-SEEEEEETTTTEEEEEEECC---
T ss_pred CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc-CC-CcEEEEECCCCcEEEEEcCC---
Confidence 99999999999999999999988887 566789999999 655555544 33 45777887766543322110
Q ss_pred hhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 221 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 221 ~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
...+...+.++.|+ +++++++|+.||.|++|+++.
T Consensus 294 -----~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 294 -----KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp -----TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred -----CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence 01234568888885 899999999999999999875
No 98
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.1e-26 Score=196.92 Aligned_cols=222 Identities=13% Similarity=0.166 Sum_probs=160.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEE-------------------------------EEEecCCCceeeeeecCCe-E
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQL-------------------------------FTFNFDSPARSVDFAVGDK-L 49 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~-~ 49 (268)
|||||+++||+|.|+||| |.+.++.+ ..+.+...|..++|+|.+. +
T Consensus 23 ~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~L 100 (588)
T 2j04_A 23 WARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWM 100 (588)
T ss_dssp ECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCE
T ss_pred ECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEE
Confidence 899999999999999996 54443321 1112234577888888665 4
Q ss_pred EEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCC-----CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--
Q 024407 50 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-----RINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-- 122 (268)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-- 122 (268)
+.++.++. +.+|+.. ..+..+. |.. .|.+++|+|+|++|++|+.||+|++||+.+++.
T Consensus 101 As~s~dg~------V~iwd~~--------~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~ 165 (588)
T 2j04_A 101 AVLSNNGN------VSVFKDN--------KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT 165 (588)
T ss_dssp EEEETTSC------EEEEETT--------EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC
T ss_pred EEEeCCCc------EEEEeCC--------ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc
Confidence 44444443 3333311 1344455 655 599999999999999999999999999998753
Q ss_pred -----eeecc-cccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCccee---eee--ecCCceeEEEEccCCCeEEE
Q 024407 123 -----LKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI---KTY--VTERPVNAVTMSPLLDHVVL 191 (268)
Q Consensus 123 -----~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~ 191 (268)
+..+. ...+|...|.+++|+|+| +++++.|++|++||+...+.. .++ .+...+..++|+ +..+++
T Consensus 166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LAS 241 (588)
T 2j04_A 166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVL 241 (588)
T ss_dssp CCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEE
T ss_pred ccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEE
Confidence 22321 124688999999999999 889999999999999887632 334 244578999998 445554
Q ss_pred eecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE--CCCCCeEEeeeCCCeEEEEeeC
Q 024407 192 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF--NPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 192 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+ +. ..+..||...+..... ..+|.+.|..++| +|++..++++++||+ ++|.++
T Consensus 242 a-~~--~tIkLWd~~~~~~~~~------------~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 242 T-CP--GYVHKIDLKNYSISSL------------KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp E-CS--SEEEEEETTTTEEEEE------------ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred E-eC--CeEEEEECCCCeEEEE------------EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 4 33 4678888766554221 1268899999999 999999999999999 999875
No 99
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.1e-25 Score=181.04 Aligned_cols=231 Identities=12% Similarity=0.055 Sum_probs=163.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecC---------CCcEEEEEe--cCCCceeeeeec--CCeEEEEEcCCCcccccceEeee
Q 024407 2 FQANSMTLITGSADQTAKLWNVE---------TGAQLFTFN--FDSPARSVDFAV--GDKLAVITTDPFMELNSAIHVKR 68 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~---------~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 68 (268)
|+|+ ++|+|.|++|++|+.. +++.+..+. +..++..+.++| .+..++.++ .++.+.+|+
T Consensus 84 ~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-----~dg~i~~wd 155 (343)
T 3lrv_A 84 EHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD-----NRGTIGFQS 155 (343)
T ss_dssp CCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE-----TTCCEEEEE
T ss_pred eCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe-----CCCcEEEEE
Confidence 6676 9999999999999765 455444444 346799999999 666655443 234555665
Q ss_pred eeeCCCCCCCceEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-eecccccCcccceEEEEEcCCCC
Q 024407 69 IARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGS 146 (268)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~~~~ 146 (268)
+. +++....... |...|+++.|+|++++|++|+.||.|++||+++++.. ..+. .+|..+|++++|+|++.
T Consensus 156 ~~------~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~fs~~g~ 227 (343)
T 3lrv_A 156 YE------DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP--VDEEAKIKEVKFADNGY 227 (343)
T ss_dssp SS------SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC--CCTTSCEEEEEECTTSS
T ss_pred CC------CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe--ccCCCCEEEEEEeCCCC
Confidence 43 3344554544 4568999999999999999999999999999998765 4443 14999999999999999
Q ss_pred EEEEeeCCCcEEEEECCCcceeeeeec----CCce--eEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh
Q 024407 147 HFLTGSLDKSAKLWDARTLELIKTYVT----ERPV--NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 220 (268)
Q Consensus 147 ~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 220 (268)
+|++++ |++|++||+++.+.+..+.. ..++ .+++|+|.+.+++++++.+. .+..|+...... .|.
T Consensus 228 ~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~-~i~v~~~~~~~~---~~~---- 298 (343)
T 3lrv_A 228 WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN-SLTIYKFDKKTK---NWT---- 298 (343)
T ss_dssp EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT-EEEEEEECTTTC---SEE----
T ss_pred EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCC-cEEEEEEccccc---ceE----
Confidence 999999 55999999999876554331 1223 35999999887777665232 244443321110 010
Q ss_pred hhhccccccccceEEEEECC---CCCeEEeeeCCCeEEEEeeCCCccee
Q 024407 221 EEIGGVKGHFGPINALAFNP---DGKSFSSGGEDGYVRLHHFDPDYFNI 266 (268)
Q Consensus 221 ~~~~~~~~h~~~v~~~~~sp---~~~~lasgs~Dg~i~i~~~~~~~~~~ 266 (268)
..++..+.|+| +.+.+++++.||.++++-..++.++|
T Consensus 299 ---------~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~i 338 (343)
T 3lrv_A 299 ---------KDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNI 338 (343)
T ss_dssp ---------EEEEEECCC----CCCCEEEEEEETTEEEEEEECSSEEEE
T ss_pred ---------ecCceeEecCccccccceeEEEecCCceEEEEecCCeEeE
Confidence 14577889998 88999999999999998777776654
No 100
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=1e-24 Score=186.47 Aligned_cols=227 Identities=21% Similarity=0.393 Sum_probs=162.6
Q ss_pred CCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 6 SMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
++.|++|+.|++|++||+.+++.+..+. +..++.++.+ .+..++..+.+ +.+.+|++ .+++++..+
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d------g~i~iwd~------~~~~~~~~~ 275 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYD------FMVKVWDP------ETETCLHTL 275 (445)
T ss_dssp TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETT------SCEEEEEG------GGTEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-CCCEEEEEcCC------CEEEEEEC------CCCcEeEEe
Confidence 4456666666666666666665555544 3444555555 23333333322 23344433 235677888
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCC
Q 024407 85 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 85 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~ 164 (268)
.+|...|.++.| +++++++++.|+.|++||+++++.+..+. +|...+.++.+ ++.++++++.|+.|++||+++
T Consensus 276 ~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 276 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc---CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCC
Confidence 899999999999 78999999999999999999988776554 68888888876 467999999999999999999
Q ss_pred cceeeeee----cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC
Q 024407 165 LELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240 (268)
Q Consensus 165 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 240 (268)
++.+..+. +...+.++.+++ ..+++ ++.+ +.+..||...+.....+... ...+|...|++++|+|
T Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s-~~~d-g~v~iwd~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 349 GQCLQTLQGPNKHQSAVTCLQFNK--NFVIT-SSDD-GTVKLWDLKTGEFIRNLVTL-------ESGGSGGVVWRIRASN 417 (445)
T ss_dssp CCEEEEECSTTSCSSCEEEEEECS--SEEEE-EETT-SEEEEEETTTCCEEEEEEEC-------TTGGGTCEEEEEEECS
T ss_pred CcEEEEEccCCCCCCCEEEEEECC--CEEEE-EeCC-CeEEEEECCCCceeeeeecc-------ccCCCCceEEEEEecC
Confidence 98888775 455688888864 34444 4433 46778887776654433111 1135778899999999
Q ss_pred CCCeEEeeeCCCe----EEEEeeCCCc
Q 024407 241 DGKSFSSGGEDGY----VRLHHFDPDY 263 (268)
Q Consensus 241 ~~~~lasgs~Dg~----i~i~~~~~~~ 263 (268)
++.++|+|+.||+ |.||+++.+.
T Consensus 418 ~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 418 TKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred CEEEEEEcccCCCCccEEEEEECCCCC
Confidence 9999999999998 9999999764
No 101
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=3.3e-26 Score=192.12 Aligned_cols=225 Identities=23% Similarity=0.317 Sum_probs=171.8
Q ss_pred CCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEE
Q 024407 15 DQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 93 (268)
Q Consensus 15 D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 93 (268)
+.++..|+..+......+. |..+|.+++|+|.+..++.++. ++.+.+|+. .+++....+++|...|.+
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~-----D~~v~iWd~------~~~~~~~~~~~h~~~v~~ 113 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQ-----DGRLIVWNA------LTSQKTHAIKLHCPWVME 113 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEET-----TSEEEEEET------TTTEEEEEEECCCTTCCC
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeC-----CCeEEEEEC------CCCccceEEecCCCCEEE
Confidence 4456678887777777775 6788999999997765554432 345556653 356678889999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcee----eecccccCcccceEEEEEcCCC-CEEEEeeCCCcEEEEECCCccee
Q 024407 94 AVWGPLNRTIISAGEDAIVRIWDTETGKLL----KESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELI 168 (268)
Q Consensus 94 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~ 168 (268)
++|+|++++|++|+.|+.+++||+.+.... .......+|...|.++.|.|++ ..|++++.|++|++||+++++.+
T Consensus 114 ~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~ 193 (380)
T 3iz6_a 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193 (380)
T ss_dssp CEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE
T ss_pred EEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE
Confidence 999999999999999999999999763211 1112235899999999999874 57999999999999999998887
Q ss_pred eeee------cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 169 KTYV------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 169 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
..+. +...+..+.+++.....+++++.++ .+..||.+... ..+..+.+|...|++++|+|++
T Consensus 194 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-~v~~wd~~~~~-----------~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 194 SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-TVRLWDLRITS-----------RAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp EEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-CEEEEETTTTC-----------CCCEEECCCSSCCCEEEECTTS
T ss_pred EEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-eEEEEECCCCC-----------cceEEECCcCCCeEEEEEecCC
Confidence 6652 3456888888875555666655554 46677765321 1233456899999999999999
Q ss_pred CeEEeeeCCCeEEEEeeCCC
Q 024407 243 KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 243 ~~lasgs~Dg~i~i~~~~~~ 262 (268)
++|+||+.||+|++|+++..
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp SEEEEECSSSCEEEEETTTT
T ss_pred CeEEEEcCCCeEEEEECCCC
Confidence 99999999999999998754
No 102
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=7.2e-25 Score=182.31 Aligned_cols=180 Identities=21% Similarity=0.324 Sum_probs=146.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecC---CeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
|+|+++.|+|||.|++|++||+++++.+..+. +..++.++.+++. ..++..+.+ +.+.+|++ .+
T Consensus 162 ~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D------g~v~~wd~------~~ 229 (354)
T 2pbi_B 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD------KKAMVWDM------RS 229 (354)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT------SCEEEEET------TT
T ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC------CeEEEEEC------CC
Confidence 78999999999999999999999999988886 5677888888873 234444333 45555554 34
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
++++..+.+|...|+++.|+|++++|++|+.|++|++||+++++.+..+.. ..+...+.+++|+|++.+|++++.|++|
T Consensus 230 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~l~~g~~d~~i 308 (354)
T 2pbi_B 230 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIFGASSVDFSLSGRLLFAGYNDYTI 308 (354)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCcccceeEEEEeCCCCEEEEEECCCcE
Confidence 567888999999999999999999999999999999999998766544432 2344578999999999999999999999
Q ss_pred EEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeec
Q 024407 158 KLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGG 194 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (268)
++||+++++.+..+. +...+.+++|+|++..+++++.
T Consensus 309 ~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 309 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp EEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 999999988776653 5678999999998876665543
No 103
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=5.3e-24 Score=178.71 Aligned_cols=233 Identities=15% Similarity=0.156 Sum_probs=178.9
Q ss_pred CCCCCCEE-EEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l-~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+||++.| ++++.|++|++||+++++.+..+.....+..++++|.+..++++... +..+.++++ .+++.
T Consensus 39 ~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~----~~~v~v~d~------~~~~~ 108 (391)
T 1l0q_A 39 ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA----SSTLSVIDT------TSNTV 108 (391)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT----TTEEEEEET------TTTEE
T ss_pred ECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECC----CCEEEEEEC------CCCeE
Confidence 89999876 78889999999999999999888888899999999977655443321 234455543 33455
Q ss_pred EEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEE-EEeeCCCcEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAK 158 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~ 158 (268)
+..+..+ ..+.++.|+|+++++ ++++.|+.|++||+.+++....+. .+ ..+..++|+|++.++ ++++.|+.|+
T Consensus 109 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~-~~~~~~~~~~dg~~l~~~~~~~~~v~ 183 (391)
T 1l0q_A 109 AGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---VG-RSPKGIAVTPDGTKVYVANFDSMSIS 183 (391)
T ss_dssp EEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CC-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe---cC-CCcceEEECCCCCEEEEEeCCCCEEE
Confidence 5555544 568999999999977 688889999999999988766554 22 456899999999987 5778899999
Q ss_pred EEECCCcceeeeeecCCceeEEEEccCCCeEEEeecC-CCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 159 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ-DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
+||+++++.+..+.....+..+.++|++..++++... ....+..||...+..... +..|. .+.+++
T Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~------------~~~~~-~~~~~~ 250 (391)
T 1l0q_A 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR------------IPVGP-DPAGIA 250 (391)
T ss_dssp EEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE------------EECCS-SEEEEE
T ss_pred EEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEE------------EecCC-CccEEE
Confidence 9999999888877777788899999998877776531 334677777766543221 22333 478999
Q ss_pred ECCCCCeE-EeeeCCCeEEEEeeCCC
Q 024407 238 FNPDGKSF-SSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 238 ~sp~~~~l-asgs~Dg~i~i~~~~~~ 262 (268)
|+|++++| ++++.|+.|++|+++..
T Consensus 251 ~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 251 VTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EccCCCEEEEEcCCCCEEEEEECCCC
Confidence 99999877 68889999999998754
No 104
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=6.9e-25 Score=187.55 Aligned_cols=223 Identities=24% Similarity=0.381 Sum_probs=174.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
+++++++|+||+.|++|++||+.+++.+..+. +..++..+.+. +..++.++.++ .+.+|++ .+++.
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg------~i~vwd~------~~~~~ 191 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-DNIIISGSTDR------TLKVWNA------ETGEC 191 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-TTEEEEEETTS------CEEEEET------TTTEE
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec-CCEEEEEeCCC------eEEEEEC------CcCcE
Confidence 46688999999999999999999999888776 56778888887 44555544443 4555544 34577
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
+..+.+|...|.++.|+ ++.+++|+.||.|++||+++++....+. +|...|.++++ ++.++++++.|+.|++|
T Consensus 192 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~~~~dg~i~iw 264 (445)
T 2ovr_B 192 IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM---GHVAAVRCVQY--DGRRVVSGAYDFMVKVW 264 (445)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE---CCSSCEEEEEE--CSSCEEEEETTSCEEEE
T ss_pred EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc---CCcccEEEEEE--CCCEEEEEcCCCEEEEE
Confidence 88899999999999996 5789999999999999999988776554 68999999988 78899999999999999
Q ss_pred ECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 161 DARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 161 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
|+++++++..+. +...+.++.+ ++..+++++ .+ ..+..||.+.+... ..+.+|...+.++.++
T Consensus 265 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d-~~i~i~d~~~~~~~------------~~~~~~~~~v~~~~~~ 328 (445)
T 2ovr_B 265 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LD-TSIRVWDVETGNCI------------HTLTGHQSLTSGMELK 328 (445)
T ss_dssp EGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TT-SCEEEEETTTCCEE------------EEECCCCSCEEEEEEE
T ss_pred ECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CC-CeEEEEECCCCCEE------------EEEcCCcccEEEEEEe
Confidence 999988877765 4556778887 344554443 33 34667776655432 2345688888888874
Q ss_pred CCCCeEEeeeCCCeEEEEeeCCC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+++|++|+.||.|++|+++..
T Consensus 329 --~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 329 --DNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTC
T ss_pred --CCEEEEEeCCCeEEEEECCCC
Confidence 679999999999999998754
No 105
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.8e-25 Score=203.48 Aligned_cols=243 Identities=11% Similarity=0.086 Sum_probs=175.9
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
.|+||+++||+|+.|++|++||..+.+......+..+|..++|+++..++.++.+ +.+.+|++. +++.
T Consensus 24 afspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D------~~v~lWd~~------~~~~ 91 (902)
T 2oaj_A 24 AFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAK------DTVYVLSLY------SQKV 91 (902)
T ss_dssp EEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETT------CEEEEEETT------TCSE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECc------CeEEEEECC------CCcE
Confidence 3899999999999999999999988877666667788999999995534444443 455666543 3456
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee-ec-------ccccCcccceEEEEEcCC-CCEEEEe
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK-ES-------DKETGHKKTITSLAKAAD-GSHFLTG 151 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~-------~~~~~h~~~v~~v~~s~~-~~~l~s~ 151 (268)
+..+. |.+.|+++.|+|++++|++|+.||.|++||+++++... .+ ....+|..+|++++|+|+ +..++++
T Consensus 92 ~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 92 LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 66665 67899999999999999999999999999999876531 11 123578999999999996 5789999
Q ss_pred eCCCcEEEEECCCcceeeeeecC-------------------CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeee
Q 024407 152 SLDKSAKLWDARTLELIKTYVTE-------------------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 212 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 212 (268)
+.|++| +||+++++++..+... ..+.+++|+|++..++.++. + ..+..||.+.+....
T Consensus 171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~-D-g~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE-D-NSLVFWDANSGHMIM 247 (902)
T ss_dssp CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET-T-CCEEEEETTTCCEEE
T ss_pred eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC-C-CeEEEEECCCCcEEE
Confidence 999999 9999998877766432 46899999999766655543 3 357788887765432
Q ss_pred E-eeehhhhhhh-cc-cc---ccccceEEEEEC----CCC-CeEEeeeCCC-----eEEEEee
Q 024407 213 K-FFDKILQEEI-GG-VK---GHFGPINALAFN----PDG-KSFSSGGEDG-----YVRLHHF 259 (268)
Q Consensus 213 ~-~~~~~~~~~~-~~-~~---~h~~~v~~~~~s----p~~-~~lasgs~Dg-----~i~i~~~ 259 (268)
. .+........ .. .. .|..+|++++|+ |++ ..|++|+.|. .+++|++
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 1 1100000000 00 00 245679999995 554 5688887763 7888774
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=1.4e-24 Score=180.63 Aligned_cols=246 Identities=9% Similarity=0.038 Sum_probs=161.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
||||+++|++|+.|+ +++||+++++........ .+..+.+.+....+++.+.. +..+.+|+. .+++++
T Consensus 27 fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----d~~v~iWd~------~~~~~~ 94 (355)
T 3vu4_A 27 FNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGV----KEVVHIWDD------VKKQDV 94 (355)
T ss_dssp ECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSS----TTEEEEEET------TTTEEE
T ss_pred ECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECC----ccEEEEEEC------CCCcEE
Confidence 899999999988775 789999988776655443 46677777665544333221 124445543 233444
Q ss_pred EEEecCCCCeEEEEEcCCC-----------------------------------CEEEE--EeCCCcEEEEECCCCceee
Q 024407 82 LILKGPQGRINRAVWGPLN-----------------------------------RTIIS--AGEDAIVRIWDTETGKLLK 124 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~s--~~~dg~i~iwd~~~~~~~~ 124 (268)
..+. +..+|.++.|+++. ++++. |+.||.|++||+++++...
T Consensus 95 ~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~ 173 (355)
T 3vu4_A 95 SRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSAT 173 (355)
T ss_dssp EEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-----
T ss_pred EEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccc
Confidence 4444 44466666665532 33443 5788999999988754110
Q ss_pred ------------e-cccccCcccceEEEEEcCCCCEEEEeeCCCc-EEEEECCCcceeeeee---cCCceeEEEEccCCC
Q 024407 125 ------------E-SDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTYV---TERPVNAVTMSPLLD 187 (268)
Q Consensus 125 ------------~-~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~ 187 (268)
. .....+|..+|++++|+|++.+|++++.|++ |++||+++++++..+. +...+.+++|+|++.
T Consensus 174 ~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~ 253 (355)
T 3vu4_A 174 TQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS 253 (355)
T ss_dssp -------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSC
T ss_pred cccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCC
Confidence 0 1223579999999999999999999999999 9999999999988886 677899999999877
Q ss_pred eEEEeecCCCceEEEeccCCCeeee-Ee---------eehhh-hhhhccccccccceEEEEECCCCCeEEeeeCCCeEEE
Q 024407 188 HVVLGGGQDASAVTTTDHRAGKFEA-KF---------FDKIL-QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256 (268)
Q Consensus 188 ~~~~~~~~~~~~i~~~d~~~~~~~~-~~---------~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i 256 (268)
.+++++.+ ..+..||.+...... .. +.... .........+......++|+|++++|++++.||.+++
T Consensus 254 ~l~s~s~d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~ 331 (355)
T 3vu4_A 254 KLAVVSDK--WTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET 331 (355)
T ss_dssp EEEEEETT--CEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred EEEEEECC--CEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE
Confidence 66665443 356777765432110 00 00000 0000000111223467999999999999999999999
Q ss_pred EeeCCC
Q 024407 257 HHFDPD 262 (268)
Q Consensus 257 ~~~~~~ 262 (268)
|.+.++
T Consensus 332 ~~~~~~ 337 (355)
T 3vu4_A 332 FKVVFD 337 (355)
T ss_dssp EEEEEE
T ss_pred EEEEcC
Confidence 987653
No 107
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=7.9e-25 Score=199.99 Aligned_cols=234 Identities=19% Similarity=0.246 Sum_probs=183.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|+++.|++|+.|++|++||+.+++.+..+. +...+..+.|+|.+..++.++. ++.+.+|++.. ....
T Consensus 63 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~-----~~~~ 132 (814)
T 3mkq_A 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWEN-----NWAL 132 (814)
T ss_dssp EEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSEEEEEEGGG-----TSEE
T ss_pred EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcC-----CCEEEEEECCC-----CceE
Confidence 89999999999999999999999999988887 6788999999998765554432 34555665532 1245
Q ss_pred EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC--CCCEEEEeeCCCcE
Q 024407 81 VLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSA 157 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i 157 (268)
...+.+|...|.++.|+| +++.|++++.||.|++||+.+++....+. ..+...+..++|+| ++.++++++.|++|
T Consensus 133 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 210 (814)
T 3mkq_A 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTI 210 (814)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTCCEEEEECTTSEE
T ss_pred EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCCCEEEEEeCCCEE
Confidence 677889999999999999 88899999999999999998876655443 23558899999999 99999999999999
Q ss_pred EEEECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 158 KLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
++||+++++.+..+. +...+.++.|+|.+..+++++.+ +.+..||...+... ..+..|...+.++
T Consensus 211 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~v~vwd~~~~~~~------------~~~~~~~~~v~~~ 276 (814)
T 3mkq_A 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED--GTLKIWNSSTYKVE------------KTLNVGLERSWCI 276 (814)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETT--SCEEEEETTTCSEE------------EEECCSSSSEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCcEE------------EEeecCCCcEEEE
Confidence 999999988877765 45678999999988766655433 34566666554432 2234567789999
Q ss_pred EECCCCC--eEEeeeCCCeEEEEeeCCC
Q 024407 237 AFNPDGK--SFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 237 ~~sp~~~--~lasgs~Dg~i~i~~~~~~ 262 (268)
+|+|+++ ++++|+ |+.+.+|++..+
T Consensus 277 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 303 (814)
T 3mkq_A 277 ATHPTGRKNYIASGF-DNGFTVLSLGND 303 (814)
T ss_dssp EECTTCGGGEEEEEE-TTEEEEEECSCC
T ss_pred EEccCCCceEEEEEe-CCCEEEEEcCCC
Confidence 9999987 355555 667888877654
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=3.2e-25 Score=182.58 Aligned_cols=231 Identities=13% Similarity=0.039 Sum_probs=166.9
Q ss_pred CCCCCC-EEEEeecCCcEEEeec-CCCcEEEEEe--cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC-
Q 024407 2 FQANSM-TLITGSADQTAKLWNV-ETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ- 76 (268)
Q Consensus 2 fs~d~~-~l~s~s~D~tv~~wd~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 76 (268)
|+|+++ +|++|+.|++|++||+ ++++...... +...+..+.++++..++..+.+ +.+.+|++.......
T Consensus 64 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~ 137 (342)
T 1yfq_A 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD------GLIEVIDPRNYGDGVI 137 (342)
T ss_dssp EEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHHHTTBCE
T ss_pred ECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccccccccc
Confidence 789999 9999999999999999 8887654445 7788999999994444444433 344555443200000
Q ss_pred --CCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeecccccCcccceEEEEEcC-CCCEEEEee
Q 024407 77 --GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGS 152 (268)
Q Consensus 77 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~ 152 (268)
..+++..+. |...|.++.|+|++ +++++.|+.|++||+++ +...... ....|...+.+++|+| ++.++++++
T Consensus 138 ~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 138 AVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp EEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred cccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccccee-eecCCCCceeEEEECCCCCCEEEEEe
Confidence 011222233 78899999999987 99999999999999988 5432111 1235788999999999 999999999
Q ss_pred CCCcEEEEECCCc------ceeeeeec-C---------CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeee
Q 024407 153 LDKSAKLWDARTL------ELIKTYVT-E---------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD 216 (268)
Q Consensus 153 ~d~~i~iwd~~~~------~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 216 (268)
.|+.|++||++.. +....+.. . ..+.+++++|++..+++++.+ +.+..||...+...
T Consensus 214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~----- 286 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD--GIISCWNLQTRKKI----- 286 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT--SCEEEEETTTTEEE-----
T ss_pred cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC--ceEEEEcCccHhHh-----
Confidence 9999999999876 55444432 2 278999999987766655433 34667776655432
Q ss_pred hhhhhhhcccccc-ccceEEEEECCCCCeEEeeeCCCe-EEEEe
Q 024407 217 KILQEEIGGVKGH-FGPINALAFNPDGKSFSSGGEDGY-VRLHH 258 (268)
Q Consensus 217 ~~~~~~~~~~~~h-~~~v~~~~~sp~~~~lasgs~Dg~-i~i~~ 258 (268)
..+.+| ...|++++ |++++|++|+.||+ .+.+.
T Consensus 287 -------~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 287 -------KNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -------EECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred -------hhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 234567 88999999 99999999999999 44433
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=4e-23 Score=173.36 Aligned_cols=227 Identities=12% Similarity=0.140 Sum_probs=176.4
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEec
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 86 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (268)
.++++++.|++|++||+++++.+..+.....+.++.++|.+..++++.. .+..+.+|+. .+++.+..+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~----~d~~i~v~d~------~~~~~~~~~~~ 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANA----HSNDVSIIDT------ATNNVIATVPA 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEG----GGTEEEEEET------TTTEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECC----CCCeEEEEEC------CCCeEEEEEEC
Confidence 4789999999999999999999988888778899999998765433321 2334555543 34566666766
Q ss_pred CCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEE-EEeeCCCcEEEEECCC
Q 024407 87 PQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDART 164 (268)
Q Consensus 87 ~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~iwd~~~ 164 (268)
+. .+.++.|+|++++|+ +++.++.|++||+.+++....+. +...+.+++|+|+++.+ ++++.|+.|++||+++
T Consensus 73 ~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 73 GS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp SS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred CC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe----CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 55 899999999999875 55577999999999988766553 34568999999999987 6888899999999999
Q ss_pred cceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCe
Q 024407 165 LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244 (268)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 244 (268)
++.+..+.....+..+.++|++..+++++..+ ..+..||.+.+.....+ .+...+.+++|+|++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~-------------~~~~~~~~~~~~~~g~~ 213 (391)
T 1l0q_A 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDS-MSISVIDTVTNSVIDTV-------------KVEAAPSGIAVNPEGTK 213 (391)
T ss_dssp TEEEEEEECCSSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEE-------------ECSSEEEEEEECTTSSE
T ss_pred CcEEEEEecCCCcceEEECCCCCEEEEEeCCC-CEEEEEECCCCeEEEEE-------------ecCCCccceEECCCCCE
Confidence 98888877667788999999988776655444 45777887766543221 23456889999999999
Q ss_pred EEeee---CCCeEEEEeeCCC
Q 024407 245 FSSGG---EDGYVRLHHFDPD 262 (268)
Q Consensus 245 lasgs---~Dg~i~i~~~~~~ 262 (268)
|++++ .|+.|++|+++..
T Consensus 214 l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 214 AYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECSSCCEEEEEETTTT
T ss_pred EEEEecCcCCCcEEEEECCCC
Confidence 88888 6899999998754
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=2.5e-23 Score=176.87 Aligned_cols=232 Identities=11% Similarity=0.094 Sum_probs=177.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|+++++++++.|++|++||+++++.+..+. +...+..+.+++.+..++++.. .+..+.++++ .+++.
T Consensus 177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~~d~------~~~~~ 246 (433)
T 3bws_A 177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW----ISEDISVIDR------KTKLE 246 (433)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET----TTTEEEEEET------TTTEE
T ss_pred EcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec----CCCcEEEEEC------CCCcE
Confidence 68899999999999999999999998888776 4567889999997765544331 1224444443 23445
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEe--------CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEE-EEe
Q 024407 81 VLILKGPQGRINRAVWGPLNRTIISAG--------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTG 151 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~ 151 (268)
+..+..+ ..+.++.|+|+++++++++ .|+.|++||+++++..... .|...+..++|+|++..+ +++
T Consensus 247 ~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 247 IRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI----GPPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp EEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE----EEEECEEEEEECSSTTEEEEEE
T ss_pred EEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec----cCCCCcceEEECCCCCEEEEEe
Confidence 5555543 4589999999999998887 5899999999998766544 356688899999999755 666
Q ss_pred eCCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCC-------------ceEEEeccCCCeeeeEeeehh
Q 024407 152 SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-------------SAVTTTDHRAGKFEAKFFDKI 218 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~i~~~d~~~~~~~~~~~~~~ 218 (268)
+.|+.|++||+++++.+..+.....+..++++|++..++++..... +.+..||...+.....+
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~---- 397 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW---- 397 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE----
T ss_pred cCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe----
Confidence 8999999999999888888777778899999999887776654332 36777777665543221
Q ss_pred hhhhhccccccccceEEEEECCCCCeEEeeeC-CCeEEEEeeCC
Q 024407 219 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFDP 261 (268)
Q Consensus 219 ~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~-Dg~i~i~~~~~ 261 (268)
.. ...+.+++|+|++++|++++. |+.|++|++++
T Consensus 398 --------~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 398 --------EA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp --------EC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred --------cC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 12 246899999999999987775 99999999873
No 111
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=7e-25 Score=179.54 Aligned_cols=209 Identities=19% Similarity=0.255 Sum_probs=147.7
Q ss_pred ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcC--CCCEEEEEeCCC
Q 024407 33 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNRTIISAGEDA 110 (268)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg 110 (268)
.|..+|.+++|++.+..++.++. +..+.+|++... ....+..+++|.++|++++|+| ++++|++|+.|+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~-----D~~v~lwd~~~~----~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSS-----DRSVKIFDVRNG----GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEET-----TTEEEEEEEETT----EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred cccCeEEEeeEcCCCCEEEEEeC-----CCeEEEEEecCC----CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence 46788999999987665554432 345666665421 1124667899999999999986 489999999999
Q ss_pred cEEEEECCCCceeeecccccCcccceEEEEEcCC--CCEEEEeeCCCcEEEEECCCccee---eee-ecCCceeEEEEcc
Q 024407 111 IVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELI---KTY-VTERPVNAVTMSP 184 (268)
Q Consensus 111 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~---~~~-~~~~~~~~~~~~~ 184 (268)
+|++||+++++.... ....+|...|.+++|+|+ +.+|++++.|++|++||++..... ..+ .+...+.++.|+|
T Consensus 82 ~v~iWd~~~~~~~~~-~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 82 KVIIWREENGTWEKS-HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp CEEEECCSSSCCCEE-EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred EEEEEECCCCcceEE-EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence 999999988642211 123479999999999998 789999999999999999875321 111 2344677888888
Q ss_pred CC----------------CeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC----Ce
Q 024407 185 LL----------------DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG----KS 244 (268)
Q Consensus 185 ~~----------------~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~----~~ 244 (268)
.. ...+++++.++ .+..||.+.... ......+.+|...|.+++|+|++ ++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~-~v~lWd~~~~~~---------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDN-LIKLWKEEEDGQ---------WKEEQKLEAHSDWVRDVAWAPSIGLPTST 230 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTS-BCCEEEECTTSC---------EEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred ccCCccccccccccCccccceEEEecCCC-eEEEEEeCCCCc---------cceeeecccCCCceEEEEecCCCCCCCce
Confidence 63 12444444443 345555432210 01123467899999999999987 78
Q ss_pred EEeeeCCCeEEEEeeCC
Q 024407 245 FSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 245 lasgs~Dg~i~i~~~~~ 261 (268)
||||+.||+|+||+++.
T Consensus 231 las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 231 IASCSQDGRVFIWTCDD 247 (316)
T ss_dssp EEEEETTCEEEEEECSS
T ss_pred EEEEcCCCeEEEEEccC
Confidence 99999999999999875
No 112
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.93 E-value=1.1e-22 Score=172.74 Aligned_cols=231 Identities=16% Similarity=0.273 Sum_probs=175.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe---cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
||++ ++|++| .|++|++||+.+++....+. +...|.+++|+|.+..+++++. ++.+.+|++ .++
T Consensus 113 wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~-----Dg~v~iWd~------~~~ 179 (420)
T 4gga_A 113 WSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS-----SAEVQLWDV------QQQ 179 (420)
T ss_dssp ECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET-----TSCEEEEET------TTT
T ss_pred ECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC-----CCeEEEEEc------CCC
Confidence 6765 467665 59999999999999887775 3456999999997766555432 345555654 456
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
+.+..+.+|...+.++.++ +..|++|+.|+.+++||........ ....+|...+..+.+++++.++++++.|+.++
T Consensus 180 ~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~--~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~ 255 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV--ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVN 255 (420)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE--EEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceee--EEecccccceeeeeecCCCCeeeeeeccccce
Confidence 7888899999999988775 5799999999999999998754332 12347999999999999999999999999999
Q ss_pred EEECCCccee----ee-eecCCceeEEEEccCCCeEEEe-ecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 159 LWDARTLELI----KT-YVTERPVNAVTMSPLLDHVVLG-GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 159 iwd~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
+||.++++.. .. ..+...+.++.++|.+..+++. ++.....+..||...+.....+ . +...
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~------------~-~~~~ 322 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV------------D-AHSQ 322 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE------------E-CSSC
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee------------c-cccc
Confidence 9999876532 11 2345678999999987776654 4445567888888776654322 2 2346
Q ss_pred eEEEEECCCCCeEEeee--CCCeEEEEeeCCC
Q 024407 233 INALAFNPDGKSFSSGG--EDGYVRLHHFDPD 262 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs--~Dg~i~i~~~~~~ 262 (268)
+.++.|+|+++.+++++ .|+.|+||+++..
T Consensus 323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred eeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 89999999999987654 7999999998754
No 113
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=2.4e-22 Score=163.55 Aligned_cols=231 Identities=16% Similarity=0.265 Sum_probs=172.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe---cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
||+++ +|++ +.|++|++||+++++.+..+. +...|.+++|++.+..++.++. ++.+.+|++ .++
T Consensus 33 WS~~~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~-----Dg~v~iw~~------~~~ 99 (318)
T 4ggc_A 33 WSSGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS-----SAEVQLWDV------QQQ 99 (318)
T ss_dssp ECTTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET-----TSEEEEEET------TTT
T ss_pred ECCCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC-----CCcEEEeec------CCc
Confidence 78875 6665 469999999999999888775 3456899999998776655442 345555554 456
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
+.+..+.+|...+.++.+ ++..+++++.++.+++|+......... ...+|...+..+.+.+++.++++++.|++|+
T Consensus 100 ~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 175 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA--TLSGHSQEVCGLRWAPDGRHLASGGNDNLVN 175 (318)
T ss_dssp EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE--EEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEE--EEcCccCceEEEEEcCCCCEEEEEecCccee
Confidence 788889999998876554 568999999999999999987644322 2247899999999999999999999999999
Q ss_pred EEECCCcceeee-----eecCCceeEEEEccCCCeEE-EeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 159 LWDARTLELIKT-----YVTERPVNAVTMSPLLDHVV-LGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 159 iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
+||+++++.... ......+..+.++|....++ ++.+.....+..||.+....... ..+...
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-------------~~~~~~ 242 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-------------VDAHSQ 242 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-------------EECSSC
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-------------ccceee
Confidence 999998754322 12345678888888766654 34455556677777665443221 235567
Q ss_pred eEEEEECCCCCeEEee--eCCCeEEEEeeCCC
Q 024407 233 INALAFNPDGKSFSSG--GEDGYVRLHHFDPD 262 (268)
Q Consensus 233 v~~~~~sp~~~~lasg--s~Dg~i~i~~~~~~ 262 (268)
+..+.|+|+++.++++ +.|+.|+||+++..
T Consensus 243 v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred eeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 9999999999987654 48999999998754
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.9e-25 Score=190.90 Aligned_cols=231 Identities=10% Similarity=0.094 Sum_probs=158.4
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCC-----CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDS-----PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
.|||||+.||++|.||+|++||.+. ++..+.++. .+.+++|+|+++.+++++. ++.+.+|++....-.
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~-----DGtVkIWd~~~~~l~ 164 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE-----DGELQFFSIRKNSEN 164 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEET-----TSEEEEEECCCCTTT
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcC-----CCEEEEEECCCCccc
Confidence 3899999999999999999999654 555555333 3899999998877766653 456667765432100
Q ss_pred -CCCceEEEE----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---eecccccCcccceEEEEEcCCCCE
Q 024407 76 -QGGESVLIL----KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL---KESDKETGHKKTITSLAKAADGSH 147 (268)
Q Consensus 76 -~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~v~~s~~~~~ 147 (268)
.....+..+ .+|..+|.+++|+|+| +++++.|++|++||+..++.. ..+. .+|...|.+++|+ +..
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~--~~h~~~V~svaFs--g~~ 238 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ--NASRRKITDLKIV--DYK 238 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE--CCCSSCCCCEEEE--TTE
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec--ccccCcEEEEEEE--CCE
Confidence 001135666 6788899999999999 888999999999999887632 2221 2688899999999 588
Q ss_pred EEEeeCCCcEEEEECCCcce-eeeeecCCceeEEEE--ccCCCeEEEeecCCCceEEEeccCCCeeee------------
Q 024407 148 FLTGSLDKSAKLWDARTLEL-IKTYVTERPVNAVTM--SPLLDHVVLGGGQDASAVTTTDHRAGKFEA------------ 212 (268)
Q Consensus 148 l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~------------ 212 (268)
+++++ +++|++||+.+++. ...+.+...+..+.+ +|++..+++++ .++.-++..| .-.+..
T Consensus 239 LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~-edG~klw~~d--~~~~spd~~l~a~~d~~v 314 (588)
T 2j04_A 239 VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN-KTSYKVLLED--ELHVTADNIIAPYLEKKF 314 (588)
T ss_dssp EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-SCEEEEEESS--SEEEECCCSSHHHHHHHH
T ss_pred EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-CCCCEEEeec--cEEECCCceEEEEcCCEE
Confidence 88887 69999999998776 444466778899999 88765544443 3332233322 100000
Q ss_pred EeeehhhhhhhccccccccceEEEEECCCCCeEEeeeC
Q 024407 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE 250 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~ 250 (268)
+.|+. ....+..+.+ ...|.+++|||||+.+|+++.
T Consensus 315 ~lW~~-~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 315 KKWST-IWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHTTT-TTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEC-CCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 01111 0111223333 456999999999999999884
No 115
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=2.6e-23 Score=170.67 Aligned_cols=211 Identities=16% Similarity=0.262 Sum_probs=154.5
Q ss_pred ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcC--CCCEEEEEeCCC
Q 024407 33 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNRTIISAGEDA 110 (268)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg 110 (268)
.|..+|.+++|+|.+..+++++. ++.+.+|++.... ...+....+.+|...|+++.|+| ++++|++++.||
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSS-----DQHIKVFKLDKDT--SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEET-----TSEEEEEEECSSS--CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccccceeEEEEcCCCCEEEEeeC-----CCeEEEEECCCCC--CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 36788999999997766555442 3456666664321 11245677889999999999999 689999999999
Q ss_pred cEEEEECCCCcee------eecccccCcccceEEEEEcCC--CCEEEEeeCCCcEEEEECCCcceeeeee----------
Q 024407 111 IVRIWDTETGKLL------KESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYV---------- 172 (268)
Q Consensus 111 ~i~iwd~~~~~~~------~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------- 172 (268)
.|++||+++++.. .......+|...|.+++|+|+ +.++++++.|++|++||+++++.+..+.
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 9999999886321 112223468999999999999 9999999999999999999876554432
Q ss_pred ----cCCceeEEEEccC---CCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC---
Q 024407 173 ----TERPVNAVTMSPL---LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG--- 242 (268)
Q Consensus 173 ----~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~--- 242 (268)
+...+.++.++|. +..+++ ++.+... ..++...+.... +..+.+|...|++++|+|++
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~-~~~~~~~~~~~~----------~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAV-SALEQAI-IYQRGKDGKLHV----------AAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEE-EETTEEE-EEEECTTSCEEE----------EEECCCCCSCEEEEEECCCSSCS
T ss_pred ccCCcccceeEEEeccCCCCCcEEEE-ecCCCcE-EEEccCCCceee----------eeecCCCCcceeEEEECCCCCCc
Confidence 2346788999986 444444 4444333 333333332211 22356788999999999998
Q ss_pred -CeEEeeeCCCeEEEEeeCCC
Q 024407 243 -KSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 243 -~~lasgs~Dg~i~i~~~~~~ 262 (268)
++|++|+.||.|++|+++..
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEEC
T ss_pred ceEEEEEcCCCeEEEEeCCCC
Confidence 89999999999999999864
No 116
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.1e-23 Score=172.68 Aligned_cols=210 Identities=17% Similarity=0.218 Sum_probs=156.9
Q ss_pred ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCC--CCEEEEEeCCC
Q 024407 33 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDA 110 (268)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg 110 (268)
.|..+|.+++|++.+..+++++. ++.+.+|++.. ...+.+..+.+|..+|+++.|+|+ +++|++++.||
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSS-----DKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEET-----TSCEEEEEEET----TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCcccEEEEEEcCCCCEEEEEEC-----CCcEEEEecCC----CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 36788999999997766555532 34556666542 123566778899999999999987 89999999999
Q ss_pred cEEEEECCCCceeeecccccCcccceEEEEEcCC--CCEEEEeeCCCcEEEEECCCcceeeee---ecCCceeEEEEccC
Q 024407 111 IVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTY---VTERPVNAVTMSPL 185 (268)
Q Consensus 111 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~ 185 (268)
.|++||+++++... .....+|...|.+++|+|+ +.++++++.|+.|++||+++....... .+...+.++.|+|.
T Consensus 80 ~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 80 KVLIWKEENGRWSQ-IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp CEEEEEEETTEEEE-EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EEEEEEcCCCceeE-eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 99999999876221 1122468899999999999 999999999999999999987433222 35567899999994
Q ss_pred -------------CCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC---CCeEEeee
Q 024407 186 -------------LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD---GKSFSSGG 249 (268)
Q Consensus 186 -------------~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---~~~lasgs 249 (268)
+..++++ +.++ .+..||.+.+..... ....+.+|...|.+++|+|+ +++|++|+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~-~~dg-~i~i~d~~~~~~~~~--------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTG-GADN-LVKIWKYNSDAQTYV--------LESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp C----------CTTCEEEEE-ETTS-CEEEEEEETTTTEEE--------EEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred cccccccccCCCCCCEEEEE-eCCC-eEEEEEecCCCccee--------eEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 4444444 3333 456666543321111 12235678899999999999 89999999
Q ss_pred CCCeEEEEeeCCC
Q 024407 250 EDGYVRLHHFDPD 262 (268)
Q Consensus 250 ~Dg~i~i~~~~~~ 262 (268)
.||.|++|+++..
T Consensus 229 ~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 229 QDRTCIIWTQDNE 241 (379)
T ss_dssp TTSCEEEEEESST
T ss_pred CCCEEEEEeCCCC
Confidence 9999999999875
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=2.4e-23 Score=177.41 Aligned_cols=216 Identities=19% Similarity=0.303 Sum_probs=161.8
Q ss_pred EEEEecCCCceeeeeecC-CeEEEEEcCCCcccccceEeeeeeeCCC----CCCCceEEEEecCCCCeEEEEEcCCCC-E
Q 024407 29 LFTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPA----DQGGESVLILKGPQGRINRAVWGPLNR-T 102 (268)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 102 (268)
...+.+...+..++++|. ..++++++. ++.+.+|++..... .....++..+.+|...|+++.|+|+++ +
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~-----dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTP-----SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY 196 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECS-----SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECC-----CCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence 334567889999999996 445554432 34566666644211 112466778899999999999999998 9
Q ss_pred EEEEeCCCcEEEEECCCCce----eeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEEEECCCc---ceeeee-ec
Q 024407 103 IISAGEDAIVRIWDTETGKL----LKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL---ELIKTY-VT 173 (268)
Q Consensus 103 l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iwd~~~~---~~~~~~-~~ 173 (268)
|++|+.||.|++||+.++.. ........+|...|.+++|+| ++.+|++++.|+.|++||+++. +.+..+ .+
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 99999999999999987432 111222347999999999999 6788999999999999999976 344444 35
Q ss_pred CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC-eEEeeeCCC
Q 024407 174 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDG 252 (268)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~lasgs~Dg 252 (268)
...+.+++|+|.+..++++++.++ .+..||.+... ..+..+.+|...|++++|+|+++ .|++|+.||
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~~-----------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADK-TVALWDLRNLK-----------LKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTT-----------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCC-----------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence 668999999998887666655553 46777766421 12234557889999999999995 599999999
Q ss_pred eEEEEeeCC
Q 024407 253 YVRLHHFDP 261 (268)
Q Consensus 253 ~i~i~~~~~ 261 (268)
.|+||++..
T Consensus 345 ~i~iwd~~~ 353 (430)
T 2xyi_A 345 RLHVWDLSK 353 (430)
T ss_dssp CCEEEEGGG
T ss_pred cEEEEeCCC
Confidence 999999976
No 118
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.93 E-value=2.8e-23 Score=173.96 Aligned_cols=219 Identities=15% Similarity=0.119 Sum_probs=158.9
Q ss_pred eecCCCcEEEEEe-cCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE--ecCCCCeEEEEE
Q 024407 21 WNVETGAQLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KGPQGRINRAVW 96 (268)
Q Consensus 21 wd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~ 96 (268)
|++...+....+. +...+.+++|++.+ .++++++. ++.+.+|++. +++....+ .+|...|+++.|
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~------~~~~~~~~~~~~h~~~v~~~~~ 126 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSK-----GGDIILWDYD------VQNKTSFIQGMGPGDAITGMKF 126 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEB-----TSCEEEEETT------STTCEEEECCCSTTCBEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcC-----CCeEEEEeCC------CcccceeeecCCcCCceeEEEe
Confidence 3444555555554 67889999999976 44444432 3455566543 22334444 479999999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee-cC
Q 024407 97 GP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TE 174 (268)
Q Consensus 97 ~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~ 174 (268)
+| ++++|++++.|+.|++||++. +....+....+|...|.+++|+|++.+|++++.|+.|++||++ ++.+..+. +.
T Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~ 204 (383)
T 3ei3_B 127 NQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHK 204 (383)
T ss_dssp ETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSS
T ss_pred CCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCC
Confidence 99 679999999999999999986 4444444334567889999999999999999999999999995 45555554 56
Q ss_pred CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC-CCCeEEeeeCCCe
Q 024407 175 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFSSGGEDGY 253 (268)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~lasgs~Dg~ 253 (268)
..+.+++|+|.+..++++++.++ .+..||.+.+... ...+.. .+|...|.+++|+| ++++|++|+.|+.
T Consensus 205 ~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~--------~~~~~~-~~~~~~v~~~~~s~~~~~~l~~~~~d~~ 274 (383)
T 3ei3_B 205 AKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIKDK--------NSYIAE-MPHEKPVNAAYFNPTDSTKLLTTDQRNE 274 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCCST--------TCEEEE-EECSSCEEEEEECTTTSCEEEEEESSSE
T ss_pred CcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCCcc--------cceEEE-ecCCCceEEEEEcCCCCCEEEEEcCCCc
Confidence 78999999998874555555443 4666776542110 001111 25788999999999 9999999999999
Q ss_pred EEEEeeCCC
Q 024407 254 VRLHHFDPD 262 (268)
Q Consensus 254 i~i~~~~~~ 262 (268)
|++|+++..
T Consensus 275 i~iwd~~~~ 283 (383)
T 3ei3_B 275 IRVYSSYDW 283 (383)
T ss_dssp EEEEETTBT
T ss_pred EEEEECCCC
Confidence 999998753
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=1.7e-22 Score=171.71 Aligned_cols=232 Identities=15% Similarity=0.134 Sum_probs=178.5
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEe------cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFN------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
|+|++.++++++.|++|++||+.+++....+. +...+..+.+.+++.+++.+.. +..+.+|++
T Consensus 130 ~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-----d~~v~~~d~------ 198 (433)
T 3bws_A 130 FIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ-----ANAVHVFDL------ 198 (433)
T ss_dssp ESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG-----GTEEEEEET------
T ss_pred EeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC-----CCEEEEEEC------
Confidence 78888899999999999999999998776432 3446778888887777665542 344555554
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee--
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-- 152 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-- 152 (268)
.+++.+..+..|...+.++.|+|++++++ +++.|+.|++||+++++....+. +...+.+++++|++..+++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD----KIGLPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC----CCSEEEEEEECTTSSEEEEEEEE
T ss_pred CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec----CCCCceEEEEcCCCCEEEEEECC
Confidence 34567777888999999999999999885 55589999999999987766553 234589999999999999888
Q ss_pred ------CCCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccc
Q 024407 153 ------LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV 226 (268)
Q Consensus 153 ------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 226 (268)
.|+.|++||+++++.+..+.....+..++++|++..++++++.+ ..+..||...+.....+
T Consensus 275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~~v~v~d~~~~~~~~~~------------ 341 (433)
T 3bws_A 275 ASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCC-SKIEVYDLKEKKVQKSI------------ 341 (433)
T ss_dssp SCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTT-TEEEEEETTTTEEEEEE------------
T ss_pred CCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCC-CEEEEEECCCCcEEEEe------------
Confidence 58899999999988877766566788899999887777665444 45677777655433221
Q ss_pred cccccceEEEEECCCCCeEEeeeC---------------CCeEEEEeeCCC
Q 024407 227 KGHFGPINALAFNPDGKSFSSGGE---------------DGYVRLHHFDPD 262 (268)
Q Consensus 227 ~~h~~~v~~~~~sp~~~~lasgs~---------------Dg~i~i~~~~~~ 262 (268)
.+...+.+++|+|+++++++++. ||.|++|+.+..
T Consensus 342 -~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 342 -PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp -ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred -cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 24456899999999998888776 579999988653
No 120
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3e-24 Score=182.95 Aligned_cols=234 Identities=12% Similarity=0.120 Sum_probs=168.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE-e-cCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF-N-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~-~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+|++..+++++ .|+ .+++.+..+ + |..+|.+++|+| .+..++.++ .++.+.+|++.........
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~ 102 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGS-----DQGVIKIWNLKEIIVGEVY 102 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEE-----TTSEEEEEEHHHHHTTCCC
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEec-----CCceEEEeECcccccCccc
Confidence 789999888876 498 456777777 4 468899999999 665555443 2345666666541111111
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceeeecc--------cc-cCcccceEEEE--EcCC
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE---TGKLLKESD--------KE-TGHKKTITSLA--KAAD 144 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~--------~~-~~h~~~v~~v~--~s~~ 144 (268)
.+...+ +|..+|+++.|+|++++|++|+.||.|++||++ +++...... .. .++...+.++. ++++
T Consensus 103 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 103 SSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp SCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred ceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence 122223 599999999999999999999999999999995 444332111 00 11455677776 6688
Q ss_pred CCEEEEeeCCCcEEEEECCCcceeeeee---cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhh
Q 024407 145 GSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE 221 (268)
Q Consensus 145 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 221 (268)
+.++++++.|++|++||+++++++..+. +...+.+++++|.+..+++++.+ +.+..||.+.+.....
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~-------- 251 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR--GIIDIWDIRFNVLIRS-------- 251 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT--SCEEEEETTTTEEEEE--------
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC--CeEEEEEcCCccEEEE--------
Confidence 9999999999999999999998888775 35689999999987666555433 3567777776543221
Q ss_pred hhcccc-ccccceEEEEEC----CCCCeEEeeeCCCeEEEEeeCCC
Q 024407 222 EIGGVK-GHFGPINALAFN----PDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 222 ~~~~~~-~h~~~v~~~~~s----p~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+. .|...|.+++|+ |++++|++|+.||.|++|+++..
T Consensus 252 ----~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 252 ----WSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp ----EBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred ----EecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 11 466789999555 56889999999999999999754
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.92 E-value=3.7e-23 Score=171.40 Aligned_cols=226 Identities=15% Similarity=0.201 Sum_probs=154.4
Q ss_pred EeecCCCcEEEEEe-cCCCceeeeeecCC---eEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEE
Q 024407 20 LWNVETGAQLFTFN-FDSPARSVDFAVGD---KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 95 (268)
Q Consensus 20 ~wd~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 95 (268)
.|+....+.+..+. |...|.+++|+|.. ..+++++. ++.+.+|++... .......+.+|...|+++.
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~-----dg~i~iw~~~~~----~~~~~~~~~~h~~~v~~~~ 93 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSW-----ANDVRCWEVQDS----GQTIPKAQQMHTGPVLDVC 93 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEET-----TSEEEEEEECTT----SCEEEEEEEECSSCEEEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECC-----CCcEEEEEcCCC----CceeEEEeccccCCEEEEE
Confidence 34445555555543 67889999999973 55555432 345666666421 1223367889999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEE--cCCCCEEEEeeCCCcEEEEECCCcceeeeeec
Q 024407 96 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDKSAKLWDARTLELIKTYVT 173 (268)
Q Consensus 96 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~--s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 173 (268)
|+|++++|++++.||.|++||+++++..... +|...|.+++| ++++.+|++++.|+.|++||+++++.+..+..
T Consensus 94 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 94 WSDDGSKVFTASCDKTAKMWDLSSNQAIQIA----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred ECcCCCEEEEEcCCCcEEEEEcCCCCceeec----cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec
Confidence 9999999999999999999999998765532 48899999999 89999999999999999999999887777665
Q ss_pred CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCee------------------------------------eeEeeeh
Q 024407 174 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF------------------------------------EAKFFDK 217 (268)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------------------------------~~~~~~~ 217 (268)
...+.++.+.+ ..++++..... +..|+.+.... ..++|+.
T Consensus 170 ~~~~~~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 245 (368)
T 3mmy_A 170 PERCYCADVIY--PMAVVATAERG--LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI 245 (368)
T ss_dssp SSCEEEEEEET--TEEEEEEGGGC--EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES
T ss_pred CCCceEEEecC--CeeEEEeCCCc--EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec
Confidence 54444444433 23333322221 12222111100 0012221
Q ss_pred hhh---hhhcccccccc------------ceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 218 ILQ---EEIGGVKGHFG------------PINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 218 ~~~---~~~~~~~~h~~------------~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
... .....+.+|.. .|++++|+|++++|++|+.||.|++|+++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 111 22233445544 7999999999999999999999999998854
No 122
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=1.7e-23 Score=175.85 Aligned_cols=240 Identities=17% Similarity=0.183 Sum_probs=174.2
Q ss_pred ecCCcEEEeecCCCcEEEEEe-cCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc--eEEEE----
Q 024407 13 SADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGE--SVLIL---- 84 (268)
Q Consensus 13 s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---- 84 (268)
+.|.++++|+++.++....+. |..++.+++|+| .+..+++++. ++.+.+|++.......... .....
T Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 94 (408)
T 4a11_B 20 RAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGS-----DGVIVLYDLENSSRQSYYTCKAVCSIGRDH 94 (408)
T ss_dssp HHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEET-----TSCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred eccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcC-----CCeEEEEECCCCcccceEeccccccccccc
Confidence 456678899988777666655 678899999999 6665555432 3455666554322111100 01111
Q ss_pred -ecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC---CEEEEeeCCCcEEE
Q 024407 85 -KGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG---SHFLTGSLDKSAKL 159 (268)
Q Consensus 85 -~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~---~~l~s~~~d~~i~i 159 (268)
.+|...|+++.|+| ++++|++++.||.|++||+++++....+. +...+.++.+++.+ .++++++.|+.|++
T Consensus 95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (408)
T 4a11_B 95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170 (408)
T ss_dssp TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEE
T ss_pred cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEE
Confidence 25999999999999 67899999999999999999987766553 56788899998854 49999999999999
Q ss_pred EECCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh----hhhccccccccceE
Q 024407 160 WDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ----EEIGGVKGHFGPIN 234 (268)
Q Consensus 160 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~ 234 (268)
||+++++.+..+. +...+.+++++|.+..++++++.++ .+..||.+.+......+..... .......+|...|.
T Consensus 171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS-RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp EESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTS-CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred EeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCC-cEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 9999988777765 5668999999999887565555443 4677777655432222221111 11123357888999
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+++|+|++++|++|+.||.|++|+++..
T Consensus 250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 9999999999999999999999998864
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=1.5e-22 Score=170.55 Aligned_cols=250 Identities=10% Similarity=0.077 Sum_probs=144.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCC----------cEEEEEecCCCceeeeeecCC--------------------eEEE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETG----------AQLFTFNFDSPARSVDFAVGD--------------------KLAV 51 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~----------~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 51 (268)
++|++..|++++.|+.|++|+.... ..+..+.+..++..+.+.+.. .+++
T Consensus 26 ~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 105 (393)
T 4gq1_A 26 QSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA 105 (393)
T ss_dssp TSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred CCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence 4666666777888999999986321 122333344444444443211 1122
Q ss_pred EEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcC--------CCCEEEEEeCCCcEEEEECCCCcee
Q 024407 52 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--------LNRTIISAGEDAIVRIWDTETGKLL 123 (268)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~s~~~dg~i~iwd~~~~~~~ 123 (268)
.++ .+..+++|+...... .....+..+.||++.|++++|+| ++++|++||.|++||+||++++...
T Consensus 106 s~~-----~d~~v~lw~~~~~~~-~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 106 CVC-----QDNTVRLIITKNETI-ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EEE-----TTSCEEEEEEETTEE-EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred EEe-----CCCcEEEEECCCCcc-ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 111 234455555432100 00012233679999999999998 7889999999999999999887655
Q ss_pred eecccccCcccceEEEEEcCCCC-EEEEeeCCCcEEEEECCCcceeeee--------------------------ecCCc
Q 024407 124 KESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTY--------------------------VTERP 176 (268)
Q Consensus 124 ~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~--------------------------~~~~~ 176 (268)
.... +|..+|.+++|+|++. +|++++.|++|++||+++++..... .+...
T Consensus 180 ~~~~---~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 180 LAGY---PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEE---ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred eeec---CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 4443 5888999999999875 7999999999999999886543321 11234
Q ss_pred eeEEEEc-cCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhh-------hhhccccccccceEEEEECC--CCCeEE
Q 024407 177 VNAVTMS-PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ-------EEIGGVKGHFGPINALAFNP--DGKSFS 246 (268)
Q Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~sp--~~~~la 246 (268)
+..+.|. |++..++. ++.+ ..+..||...+.....+...... ........+...+ ...|+| ++.+++
T Consensus 257 v~~v~~~~~dg~~l~s-~s~d-~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 333 (393)
T 4gq1_A 257 LANVRWIGSDGSGILA-MCKS-GAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL-GACPHPRYMDYFAT 333 (393)
T ss_dssp CSEEEEETTTTCEEEE-ECTT-SEEEEEEC-------------------CCSCSEEEECSSCCSS-CCEECSSCTTEEEE
T ss_pred ceeeeeecCCCCEEEE-EeCC-CCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce-eEEEccCCCCEEEE
Confidence 5566766 55544444 3333 34666776544322211110000 0000111111222 233443 445678
Q ss_pred eeeCCCeEEEEeeCCCc
Q 024407 247 SGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 247 sgs~Dg~i~i~~~~~~~ 263 (268)
+|+.||+|+||+.....
T Consensus 334 sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 334 AHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EETTTTEEEEEETTCTT
T ss_pred EECCCCEEEEEECCCCc
Confidence 89999999999988653
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-21 Score=178.27 Aligned_cols=210 Identities=17% Similarity=0.217 Sum_probs=156.7
Q ss_pred ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCC--CCEEEEEeCCC
Q 024407 33 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDA 110 (268)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg 110 (268)
.|..+|.+++|+|.+..+++++. ++.+.+|++.. .+.+.+..+.+|.++|+++.|+|+ +++|++|+.||
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~-----dg~I~vwd~~~----~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSS-----DKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEET-----TTEEEEEEEET----TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred cCcceeEEEEECCCCCeEEEEEC-----CCcEEEEecCC----CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 36788999999987665554432 34566666542 133567778999999999999998 89999999999
Q ss_pred cEEEEECCCCceeeecccccCcccceEEEEEcCC--CCEEEEeeCCCcEEEEECCCcceeee---eecCCceeEEEEccC
Q 024407 111 IVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKT---YVTERPVNAVTMSPL 185 (268)
Q Consensus 111 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~ 185 (268)
.|++||+++++... .....+|...|.+++|+|+ +..+++++.|++|++||+++...... ..+...+.++.++|.
T Consensus 78 ~I~vwd~~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 78 KVLIWKEENGRWSQ-IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp CEEEEEEETTEEEE-EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred eEEEEECCCCcccc-cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 99999999876221 1123469999999999999 99999999999999999998733222 235667899999994
Q ss_pred -------------CCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC---CCeEEeee
Q 024407 186 -------------LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD---GKSFSSGG 249 (268)
Q Consensus 186 -------------~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---~~~lasgs 249 (268)
+..+++++. + +.+..||.+.+.... .....+.+|...|++++|+|+ +++|++|+
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~-d-g~I~iwd~~~~~~~~--------~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGA-D-NLVKIWKYNSDAQTY--------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp C---------CGGGCCEEEEET-T-SCEEEEEEETTTTEE--------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ccccccccccCCCCCEEEEEEC-C-CeEEEEeccCCcccc--------eeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 444554443 3 346666655432111 112335678999999999999 89999999
Q ss_pred CCCeEEEEeeCCC
Q 024407 250 EDGYVRLHHFDPD 262 (268)
Q Consensus 250 ~Dg~i~i~~~~~~ 262 (268)
.||.|++|+++..
T Consensus 227 ~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 227 QDRTCIIWTQDNE 239 (753)
T ss_dssp SSSCEEEEEESSS
T ss_pred cCCEEEEecCCCC
Confidence 9999999999875
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=5e-21 Score=162.46 Aligned_cols=237 Identities=12% Similarity=0.129 Sum_probs=163.4
Q ss_pred CCCCCC-EEEEee----cCC----cEEEeec--CCCcEEEE--Ee-cCCCceeeeeec---------------CCeEEEE
Q 024407 2 FQANSM-TLITGS----ADQ----TAKLWNV--ETGAQLFT--FN-FDSPARSVDFAV---------------GDKLAVI 52 (268)
Q Consensus 2 fs~d~~-~l~s~s----~D~----tv~~wd~--~~~~~~~~--~~-~~~~~~~~~~~~---------------~~~~~~~ 52 (268)
|++.+. ++++|+ .|| ++++||+ .+++.+.. +. +...+..+.+++ +..++.+
T Consensus 70 w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~ 149 (415)
T 2hqs_A 70 WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 149 (415)
T ss_dssp HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEE
T ss_pred HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEE
Confidence 344443 566887 457 9999999 88887643 33 333344444443 4556555
Q ss_pred EcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeeecccc
Q 024407 53 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA---IVRIWDTETGKLLKESDKE 129 (268)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~ 129 (268)
+.+........+.+++.. +.....+.+|...+.++.|+|+|++|++++.|+ .|++||+++++... +
T Consensus 150 s~~~~~~~~~~i~i~d~~-------g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l--- 218 (415)
T 2hqs_A 150 VQTNGGQFPYELRVSDYD-------GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V--- 218 (415)
T ss_dssp EECSSSSCCEEEEEEETT-------SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E---
T ss_pred EecCCCCccceEEEEcCC-------CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e---
Confidence 543211111344444432 233556778899999999999999999999885 99999999987643 2
Q ss_pred cCcccceEEEEEcCCCCEEE-EeeCCCc--EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCC-CceEEEecc
Q 024407 130 TGHKKTITSLAKAADGSHFL-TGSLDKS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTTTDH 205 (268)
Q Consensus 130 ~~h~~~v~~v~~s~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~ 205 (268)
..|...+.+++|+||+..|+ +++.|+. |.+||+++++......+...+..+.|+|++..+++++..+ ...++.+|.
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 24677899999999999888 6666654 9999999887644334455788899999988777766533 235666665
Q ss_pred CCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCC---CeEEEEeeCCC
Q 024407 206 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED---GYVRLHHFDPD 262 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~D---g~i~i~~~~~~ 262 (268)
..+... .+..|...+.+++|+|||++|++++.+ ..|++|+++..
T Consensus 299 ~~~~~~-------------~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 299 NGGAPQ-------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp TSSCCE-------------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CCCCEE-------------EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 544321 122345578899999999999988864 57888888754
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.89 E-value=4.8e-21 Score=159.23 Aligned_cols=160 Identities=13% Similarity=0.220 Sum_probs=119.5
Q ss_pred CCCCCCEE-EEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCc----------------------
Q 024407 2 FQANSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM---------------------- 58 (268)
Q Consensus 2 fs~d~~~l-~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 58 (268)
|.++++.+ ++++.|++|++||+.+++.+..+.+..++..+.+++... ++ +.+..+
T Consensus 66 ~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~-~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 143 (355)
T 3vu4_A 66 MLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFI-VV-SYGDVISVFKFGNPWKRITDDIRFGGVC 143 (355)
T ss_dssp ECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEE-EE-EETTEEEEEESSTTCCBSSCCEEEEEEE
T ss_pred EcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEE-EE-EEcCEEEEEECCCCceeeEEeccCCceE
Confidence 34556666 678889999999999999999998888888888876432 22 222211
Q ss_pred ------------ccccceEeeeeeeCCCC---------CCCce-EEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEE
Q 024407 59 ------------ELNSAIHVKRIARDPAD---------QGGES-VLILKGPQGRINRAVWGPLNRTIISAGEDAI-VRIW 115 (268)
Q Consensus 59 ------------~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iw 115 (268)
..++.+.+|++...... ....+ +..+.+|.++|++++|+|++++|++|+.|++ |++|
T Consensus 144 ~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 144 EFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp EEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred EEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 11223344443321000 00012 6778999999999999999999999999998 9999
Q ss_pred ECCCCceeeecccccC-cccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc
Q 024407 116 DTETGKLLKESDKETG-HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 116 d~~~~~~~~~~~~~~~-h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~ 165 (268)
|+++++.+..+. .+ |...|.+++|+|++.+|++++.|++|++||++..
T Consensus 224 d~~~~~~~~~~~--~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 224 KTEDGVLVREFR--RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp ETTTCCEEEEEE--CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred ECCCCcEEEEEE--cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 999998876654 13 8899999999999999999999999999999764
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=1.5e-21 Score=158.44 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=109.4
Q ss_pred CCC---CCCEEEEeecCCcEEEeecCCCcEEEEEec-C---CCceeeeeecCCeEEEEEcCCC-------cccccceEee
Q 024407 2 FQA---NSMTLITGSADQTAKLWNVETGAQLFTFNF-D---SPARSVDFAVGDKLAVITTDPF-------MELNSAIHVK 67 (268)
Q Consensus 2 fs~---d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 67 (268)
|+| |+.+|+|||.|++||+||+++++.+..+.. + ..+..++|+|++.+++..+.+. ...+..+.+|
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 555 678899999999999999999999998863 2 2355668999888776544211 1223333433
Q ss_pred eeeeCCCCCCCceEEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceE-EEEE
Q 024407 68 RIARDPADQGGESVLIL-----KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAK 141 (268)
Q Consensus 68 ~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~v~~ 141 (268)
+ ..+++.+..+ .+|...+.+..++ +..+++++.|++|++||+.+++.+..+. +|...+. .++|
T Consensus 266 d------~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vaf 334 (356)
T 2w18_A 266 N------PKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKW 334 (356)
T ss_dssp E------TTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEE
T ss_pred E------CCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEE
Confidence 3 2455555544 3676665544443 7889999999999999999999887664 5776655 5899
Q ss_pred cCCCCEEEEeeCCCcEEEEEC
Q 024407 142 AADGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 142 s~~~~~l~s~~~d~~i~iwd~ 162 (268)
+||+++|++++.|++|++||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999985
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=8.7e-20 Score=154.82 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=163.9
Q ss_pred CCEEEEeecC------CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 6 SMTLITGSAD------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 6 ~~~l~s~s~D------~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
+..++.++.+ ++|++||++.........+...+..++|+|+++.++.++... -...+.++++. +++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~------tg~ 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLA------NGA 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETT------TCC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECC------CCc
Confidence 5667766665 799999998655544455778899999999876555443211 01234444432 333
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-CC
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTII-SAGEDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK 155 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~ 155 (268)
. ..+.+|...+.++.|+|+|++|+ +++.|+. |++||+++++.. .+ ..|...+.+++|+||+..|++++. ++
T Consensus 215 ~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l---~~~~~~~~~~~~spdg~~l~~~s~~~g 289 (415)
T 2hqs_A 215 V-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV---TDGRSNNTEPTWFPDSQNLAFTSDQAG 289 (415)
T ss_dssp E-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC---CCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred E-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC---cCCCCcccceEECCCCCEEEEEECCCC
Confidence 3 35677888999999999999887 6666665 999999987653 22 357788999999999999988876 44
Q ss_pred --cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCeeeeEeeehhhhhhhccccccccc
Q 024407 156 --SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 232 (268)
Q Consensus 156 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 232 (268)
.|.+||+.+++..........+..+.|+|++..++++...++ ..+..||...+... .+..|. .
T Consensus 290 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-------------~l~~~~-~ 355 (415)
T 2hqs_A 290 RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-------------VLSSTF-L 355 (415)
T ss_dssp SCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-------------ECCCSS-S
T ss_pred CcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-------------EecCCC-C
Confidence 677889988765433334456778999999888777665432 45677776654431 122333 7
Q ss_pred eEEEEECCCCCeEEeeeCCC---eEEEEeeCCCc
Q 024407 233 INALAFNPDGKSFSSGGEDG---YVRLHHFDPDY 263 (268)
Q Consensus 233 v~~~~~sp~~~~lasgs~Dg---~i~i~~~~~~~ 263 (268)
+.+++|+|||++|++++.|+ .|++|+++++.
T Consensus 356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 356 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 89999999999999988877 78888887653
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=9.8e-19 Score=143.30 Aligned_cols=248 Identities=11% Similarity=0.059 Sum_probs=161.9
Q ss_pred CCCCCCEEEEeec-CCcEEEeecCCCcE-EEEEecCCCcee-eeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSA-DQTAKLWNVETGAQ-LFTFNFDSPARS-VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~-D~tv~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+||++.|++++. +++|.+||+++++. ...+.....+.. +.++|++..+++..... -...+.+++. .++
T Consensus 47 ~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~~~i~v~d~------~~~ 118 (331)
T 3u4y_A 47 ITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLN--HPFNMQSYSF------LKN 118 (331)
T ss_dssp ECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSS--SSCEEEEEET------TTT
T ss_pred EcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCC--CcccEEEEEC------CCC
Confidence 7999997666665 89999999999887 666665555555 99999877666433210 0003444433 234
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEE-EeCCCc-EEEEECCCCceeeec-ccccCcccceEEEEEcCCCCEEE-EeeCC
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIIS-AGEDAI-VRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFL-TGSLD 154 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~-i~iwd~~~~~~~~~~-~~~~~h~~~v~~v~~s~~~~~l~-s~~~d 154 (268)
+.+..+..+ ....++.|+|+|+++++ ...++. |.+|++.....+... ............++|+|++.+++ ++..+
T Consensus 119 ~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 119 KFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp EEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT
T ss_pred CeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC
Confidence 555555544 34689999999986654 456688 999998764332111 00012234578899999999665 45568
Q ss_pred CcEEEEECCCcce---eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 155 KSAKLWDARTLEL---IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 155 ~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
+.|.+||+++++. +..+.....+..+.++|++..++++.. ....+..+|...+....... . ...+........
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~~~~i~~~d~~~~~~~~~~~--~-~~~~~~~~~~~~ 273 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTE-STVDVFNFNQLSGTLSFVKS--F-GHGLLIDPRPLF 273 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECS-SEEEEEEEETTTTEEEEEEE--E-ECCCCCCCGGGT
T ss_pred CeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEc-CCCEEEEEECCCCceeeecc--c-ccccccCCCCcc
Confidence 9999999999887 777766667788999999887766544 33446778877665521110 0 000000011122
Q ss_pred ceEEEEECCCCCeEEee-eCCCeEEEEeeCCC
Q 024407 232 PINALAFNPDGKSFSSG-GEDGYVRLHHFDPD 262 (268)
Q Consensus 232 ~v~~~~~sp~~~~lasg-s~Dg~i~i~~~~~~ 262 (268)
....++|+||+++|+.+ ..++.|++|++..+
T Consensus 274 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 274 GANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp TCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred cccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 23679999999987544 45679999999865
No 130
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=6.3e-19 Score=145.14 Aligned_cols=231 Identities=11% Similarity=0.064 Sum_probs=155.1
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCC--CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
+|++++.++++++.|++|++||+++++.+..+.... .+..+.++|++..+.++... ...+.+++. .++
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----~~~i~~~d~------~t~ 75 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH----YGDIYGIDL------DTC 75 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT----TTEEEEEET------TTT
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC----CCcEEEEeC------CCC
Confidence 478899999999999999999999998888887665 67889999877654444321 123333332 234
Q ss_pred ceEEEEecCC------CCeEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCceeeecccccCcccceEEEE
Q 024407 79 ESVLILKGPQ------GRINRAVWGPLNRTIISAGED------------AIVRIWDTETGKLLKESDKETGHKKTITSLA 140 (268)
Q Consensus 79 ~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~ 140 (268)
+.+..+..+. ..+..+.|+|+|+++++++.+ +.|.+||+.+++........ .+...+.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~ 154 (349)
T 1jmx_B 76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMR 154 (349)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEE
T ss_pred cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCccccee
Confidence 4454554322 237789999999999988865 99999999886543322211 1334688899
Q ss_pred EcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCC---------------------------------------------
Q 024407 141 KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--------------------------------------------- 175 (268)
Q Consensus 141 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------------------- 175 (268)
++|++. +++++. .|.+||+++++.+..+....
T Consensus 155 ~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 155 AADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp ECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred ECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 999999 555543 49999999887766543221
Q ss_pred ------------------------ceeEEEEcc-CCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccc
Q 024407 176 ------------------------PVNAVTMSP-LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 230 (268)
Q Consensus 176 ------------------------~~~~~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~ 230 (268)
....+.++| ++..++++ ...+..||...+.....+ . ..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~------------~-~~ 294 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAA------------N-LD 294 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEE------------E-CS
T ss_pred ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEE------------c-CC
Confidence 122334456 55554444 234556665554432211 1 11
Q ss_pred cceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 231 GPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 231 ~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+.+++|+|++++|++++.++.|++|+.+..
T Consensus 295 ~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 295 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 24678999999999888888999999998753
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=9.5e-20 Score=165.07 Aligned_cols=233 Identities=11% Similarity=0.082 Sum_probs=164.5
Q ss_pred CCCCCCEEEEeec-CC-----cEEEeecCCCcEEEEEecC-------------------------CCceeeeeecCCeEE
Q 024407 2 FQANSMTLITGSA-DQ-----TAKLWNVETGAQLFTFNFD-------------------------SPARSVDFAVGDKLA 50 (268)
Q Consensus 2 fs~d~~~l~s~s~-D~-----tv~~wd~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~ 50 (268)
|||||+.|++++. |+ +|++||+++++....+... ..+..+.|+|+++.+
T Consensus 44 ~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l 123 (741)
T 2ecf_A 44 VAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRL 123 (741)
T ss_dssp ECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEE
T ss_pred EecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEE
Confidence 8999999999999 98 9999999999876666532 126788999988766
Q ss_pred EEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccccc
Q 024407 51 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET 130 (268)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 130 (268)
+.++. ..+.++++.... ......+..|...+..+.|+|||++|+.++ ++.|++||+.+++......
T Consensus 124 ~~~~~------~~i~~~d~~~~~----~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~--- 189 (741)
T 2ecf_A 124 LFPLG------GELYLYDLKQEG----KAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA--- 189 (741)
T ss_dssp EEEET------TEEEEEESSSCS----TTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC---
T ss_pred EEEeC------CcEEEEECCCCC----cceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc---
Confidence 66543 344444432210 002233556778899999999999999887 4689999999876543221
Q ss_pred Cccc----------------ceEEEEEcCCCCEEEEeeCCC---------------------------------cEEEEE
Q 024407 131 GHKK----------------TITSLAKAADGSHFLTGSLDK---------------------------------SAKLWD 161 (268)
Q Consensus 131 ~h~~----------------~v~~v~~s~~~~~l~s~~~d~---------------------------------~i~iwd 161 (268)
.+.. .+..++|+|||..|++++.|+ .|.+||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 1211 147799999999999988766 789999
Q ss_pred CCC-cceeeee---ecCCceeEEEEccCCCeEEEeec---CCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc---
Q 024407 162 ART-LELIKTY---VTERPVNAVTMSPLLDHVVLGGG---QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG--- 231 (268)
Q Consensus 162 ~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~--- 231 (268)
+.+ ++..... .+...+..++| |++..+++... .....+..||...+.....+ ..+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~------------~~~~~~~~ 336 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA------------HETSPTWV 336 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE------------EEECSSCC
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE------------EcCCCCcC
Confidence 988 7654332 13346788999 99888776543 22345667776665533211 11211
Q ss_pred -ceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 232 -PINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 232 -~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
.+.+++|+|||+++++++.||.++||.++.
T Consensus 337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp CCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred CcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence 356889999999999999999999998873
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.85 E-value=5e-19 Score=154.95 Aligned_cols=244 Identities=11% Similarity=0.097 Sum_probs=168.8
Q ss_pred CCCCCCEEEEeecCCcEEEeec--CCCcEEEEEecCCCceeeeeec----CCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNV--ETGAQLFTFNFDSPARSVDFAV----GDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
||||+++|++++.|++|++||+ .+++.+..+.....+..+.++| +++.+++++. ....+.+++.
T Consensus 186 ~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~----~~~~v~v~D~------ 255 (543)
T 1nir_A 186 MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY----WPPQFAIMDG------ 255 (543)
T ss_dssp ECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE----ESSEEEEEET------
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEc----cCCeEEEEec------
Confidence 8999999999999999999999 8888888888777789999999 7776665541 1233444432
Q ss_pred CCCceEEEEecC-----------CCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC
Q 024407 76 QGGESVLILKGP-----------QGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143 (268)
Q Consensus 76 ~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 143 (268)
.+++++..+..+ ...+..+.++|+++. +++...++.|.+||+.+.+.+.... . .+...+..++|+|
T Consensus 256 ~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~-i-~~~~~~~~~~~sp 333 (543)
T 1nir_A 256 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS-I-GAAPFLHDGGWDS 333 (543)
T ss_dssp TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEE-E-ECCSSCCCEEECT
T ss_pred cccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEE-e-ccCcCccCceECC
Confidence 345566666542 236889999998765 5677889999999998865443111 1 2445677899999
Q ss_pred CCCEEEEe-eCCCcEEEEECCCcceeeeeecC---CceeEEE-EccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehh
Q 024407 144 DGSHFLTG-SLDKSAKLWDARTLELIKTYVTE---RPVNAVT-MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 218 (268)
Q Consensus 144 ~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 218 (268)
++.+++++ ..+++|.+||+++++++..+... .+-.... .+|.+..+++++..+...+..||.....-. ..
T Consensus 334 dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~-----~~ 408 (543)
T 1nir_A 334 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP-----QY 408 (543)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT-----TT
T ss_pred CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCc-----hh
Confidence 99987655 46899999999999888776532 1111222 467656666655433345666665431000 00
Q ss_pred hhhhhccccccccceEEEEECCCCCeEEeee-------CCCeEEEEeeCCC
Q 024407 219 LQEEIGGVKGHFGPINALAFNPDGKSFSSGG-------EDGYVRLHHFDPD 262 (268)
Q Consensus 219 ~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs-------~Dg~i~i~~~~~~ 262 (268)
..+.++++.+|...+..+++||++++|++++ .+++|.||+.+..
T Consensus 409 ~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 409 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp BTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred cCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 0112344566777788999999999999987 2789999998743
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=8.6e-19 Score=143.87 Aligned_cols=241 Identities=12% Similarity=0.158 Sum_probs=155.8
Q ss_pred CCCCCCEEEEeecC-CcEEEeecC--CCcE--EEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 2 FQANSMTLITGSAD-QTAKLWNVE--TGAQ--LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 2 fs~d~~~l~s~s~D-~tv~~wd~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
|+||++.|++++.+ ++|++|++. +++. +..+.....+..+.++|.+..++++... ...+.++++. . ..
T Consensus 45 ~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~i~~~d~~-~--~~ 117 (343)
T 1ri6_A 45 VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----AGNVSVTRLE-D--GL 117 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT----TTEEEEEEEE-T--TE
T ss_pred ECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC----CCeEEEEECC-C--Cc
Confidence 89999999999887 999999997 5553 3445555578899999987755444321 2334555542 0 01
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cceeeec--ccccCcccceEEEEEcCCCCEEEEe-
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTET-GKLLKES--DKETGHKKTITSLAKAADGSHFLTG- 151 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~--~~~~~h~~~v~~v~~s~~~~~l~s~- 151 (268)
..+.+..+..+ ..+.++.|+|+++++++++ .++.|++||+.+ ++..... .........+..++|+|++.+++++
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 118 PVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp EEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred cccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEe
Confidence 12233334433 4588899999999888776 899999999987 5442211 1111123467889999999977655
Q ss_pred eCCCcEEEEECCC--cce--eeeee---c----CCceeEEEEccCCCeEEEeecCCCceEEEeccC--CCeeeeEeeehh
Q 024407 152 SLDKSAKLWDART--LEL--IKTYV---T----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKI 218 (268)
Q Consensus 152 ~~d~~i~iwd~~~--~~~--~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~ 218 (268)
..++.|.+||++. ++. ..... . ...+..++++|++..++++...+ ..+..|+.. .+.....
T Consensus 197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-~~i~v~d~~~~~~~~~~~----- 270 (343)
T 1ri6_A 197 ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-SLITVFSVSEDGSVLSKE----- 270 (343)
T ss_dssp TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-TEEEEEEECTTSCCEEEE-----
T ss_pred CCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC-CEEEEEEEcCCCCceEEe-----
Confidence 4889999999953 322 12211 1 12345789999988776655333 345666654 2221111
Q ss_pred hhhhhccccccccceEEEEECCCCCeEEeee-CCCeEEEEeeCCC
Q 024407 219 LQEEIGGVKGHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFDPD 262 (268)
Q Consensus 219 ~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs-~Dg~i~i~~~~~~ 262 (268)
..+..+. .+.+++|+|++++|++++ .|+.|++|+++.+
T Consensus 271 -----~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 271 -----GFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp -----EEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred -----eeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 1111222 378899999999887777 6899999988744
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=8.2e-18 Score=138.75 Aligned_cols=233 Identities=16% Similarity=0.122 Sum_probs=167.5
Q ss_pred CCCCCCEEEEeec-------CCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 2 FQANSMTLITGSA-------DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 2 fs~d~~~l~s~s~-------D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
|+||++.|++++. +++|.+||+++++.+..+.....+..+.+++.+..++++... ...+.+++.
T Consensus 48 ~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~----~~~v~~~d~----- 118 (353)
T 3vgz_A 48 YSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTV----NSAVTAIDA----- 118 (353)
T ss_dssp EETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETT----TTEEEEEET-----
T ss_pred ECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecC----CCEEEEEeC-----
Confidence 7899999888884 578999999999998888877778899999977644443321 123333332
Q ss_pred CCCCceEEEEecCCCC---------eEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeeecccccCcccceEEEEEcC
Q 024407 75 DQGGESVLILKGPQGR---------INRAVWGPLNRTIISAG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 143 (268)
.+++.+..+..+... +.++.|+|+++++++++ .++.|.+||+.+++....+. .+...+..++++|
T Consensus 119 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 119 -KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ---NTGKMSTGLALDS 194 (353)
T ss_dssp -TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC---CCCTTCCCCEEET
T ss_pred -CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec---CCCCccceEEECC
Confidence 344555556554322 68899999999877665 58899999999988766553 2334567889999
Q ss_pred CCCEEEEeeCCCcEEEEECCCcceeeeeec-----CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehh
Q 024407 144 DGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 218 (268)
Q Consensus 144 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 218 (268)
++..+++++.++.|.+||+.+++.+..+.. ......++++|++..++++.. ....+..+|...+.....+ .
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~v~~~d~~~~~~~~~~-~-- 270 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS-KAAEVLVVDTRNGNILAKV-A-- 270 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES-SSSEEEEEETTTCCEEEEE-E--
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC-CCCEEEEEECCCCcEEEEE-E--
Confidence 999999999999999999999887776543 234667899999887766543 3356777777666543221 1
Q ss_pred hhhhhccccccccceEEEEECCCCCeE-EeeeCCCeEEEEeeCCC
Q 024407 219 LQEEIGGVKGHFGPINALAFNPDGKSF-SSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 219 ~~~~~~~~~~h~~~v~~~~~sp~~~~l-asgs~Dg~i~i~~~~~~ 262 (268)
.. .-.+++|+|+++++ ++...++.|.+|+.+..
T Consensus 271 ---------~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 271 ---------AP--ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp ---------CS--SCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ---------cC--CCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 11 12468999999864 45557999999988643
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=2.2e-19 Score=162.19 Aligned_cols=238 Identities=15% Similarity=0.162 Sum_probs=156.9
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCC----CceeeeeecCCeEEEEEcC-CCc---ccccceEeeeeeeC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDS----PARSVDFAVGDKLAVITTD-PFM---ELNSAIHVKRIARD 72 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~ 72 (268)
.|||||+++++ +.|++|++||+.+++....+.... .+..+.|+|+++.++.+.. ... .....+.+|++..
T Consensus 23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~- 100 (723)
T 1xfd_A 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH- 100 (723)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-
T ss_pred EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC-
Confidence 49999997776 789999999999998877776443 3889999998876555543 211 1123444554432
Q ss_pred CCCCCCce--EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCccc----------------
Q 024407 73 PADQGGES--VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK---------------- 134 (268)
Q Consensus 73 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---------------- 134 (268)
++. +....+|...+..+.|+|||++|+.++. +.|++||+.+++...... .+..
T Consensus 101 -----~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~---~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 101 -----GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS---TGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp -----CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC---CCBTTTEEEEECCHHHHHTT
T ss_pred -----CceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec---CCCCCceECcccceeEEEEe
Confidence 222 1112244556889999999999998876 799999999876543222 1222
Q ss_pred --ceEEEEEcCCCCEEEEeeCCC----------------------------------cEEEEECCCcceeeeeec-----
Q 024407 135 --TITSLAKAADGSHFLTGSLDK----------------------------------SAKLWDARTLELIKTYVT----- 173 (268)
Q Consensus 135 --~v~~v~~s~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~~~~~~----- 173 (268)
.+.+++|+|||+.|++++.|+ .|.+||+.+++....+..
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 237899999999999887653 799999998775444432
Q ss_pred --CCceeEEEEccCCCeEEEeecC--CCceEEEeccCCCeeeeEeeehhhhhhhccccccccce----EEEEECCCCCeE
Q 024407 174 --ERPVNAVTMSPLLDHVVLGGGQ--DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI----NALAFNPDGKSF 245 (268)
Q Consensus 174 --~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~~~~sp~~~~l 245 (268)
...+..+.|+|++..++..... ....+..||...+.....+. ..+...+ .+++|||||+.|
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~spdg~~l 320 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-----------DESEAWLHRQNEEPVFSKDGRKF 320 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-----------EECSSCCCCCCCCCEECTTSCSE
T ss_pred CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-----------eccCCEEeccCCCceEcCCCCeE
Confidence 3356789999988765444332 23456677766554322110 0122233 378999999977
Q ss_pred Ee--eeCCC----eEEEEeeC
Q 024407 246 SS--GGEDG----YVRLHHFD 260 (268)
Q Consensus 246 as--gs~Dg----~i~i~~~~ 260 (268)
+. +..|+ ..+||.++
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 321 FFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EEEEEECCSSSSCEEEEEEEC
T ss_pred EEEEecccCCCcceeEEEEEe
Confidence 74 55777 66666665
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=8.5e-18 Score=137.57 Aligned_cols=223 Identities=15% Similarity=0.106 Sum_probs=150.7
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEecCC---CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFNFDS---PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
++|++++.|++|++||+.+++.+..+.... .+..+.++|.+..++++... ...+.+++. .+++.+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~----~~~v~~~d~------~~~~~~~~ 71 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK----SESLVKIDL------VTGETLGR 71 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT----TTEEEEEET------TTCCEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC----CCeEEEEEC------CCCCeEee
Confidence 579999999999999999999888887666 68899999987544443321 123333332 23444544
Q ss_pred Eec-C----CCCeEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC
Q 024407 84 LKG-P----QGRINRAVWGPLNRTIISAG------------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 146 (268)
Q Consensus 84 ~~~-~----~~~v~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~ 146 (268)
+.. + ...+..+.|+|+|+++++++ .++.|.+||+.+++....+.. ...+..++++|++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~ 147 (337)
T 1pby_B 72 IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGS 147 (337)
T ss_dssp EECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSS
T ss_pred EEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC----CCCcceeEECCCCC
Confidence 442 1 12567899999999988886 679999999998876655432 34567788999999
Q ss_pred EEEEeeCCCcEEEEECCCcceeeeeecCC---------------------------------------------------
Q 024407 147 HFLTGSLDKSAKLWDARTLELIKTYVTER--------------------------------------------------- 175 (268)
Q Consensus 147 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------------------------- 175 (268)
+++++ ++.|.+||+++++.+..+....
T Consensus 148 ~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 225 (337)
T 1pby_B 148 KLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp CEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence 88887 6889999999877654432211
Q ss_pred ----------------ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 176 ----------------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 176 ----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
.+..+.++|++..++++ ...+..||...+.... .+. ....+.+++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~v~~~d~~~~~~~~------------~~~-~~~~~~~~~~s 288 (337)
T 1pby_B 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA----YNVLESFDLEKNASIK------------RVP-LPHSYYSVNVS 288 (337)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE----ESEEEEEETTTTEEEE------------EEE-CSSCCCEEEEC
T ss_pred CCCCCceEeecCCCCCceeeEEECCCCCEEEEe----CCeEEEEECCCCcCcc------------eec-CCCceeeEEEC
Confidence 11224555554444433 1234444444333221 111 11357789999
Q ss_pred CCCCeEEeeeCCCeEEEEeeCCC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|++++|++++.|+.|++|+.+..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTC
T ss_pred CCCCEEEEEcCCCcEEEEECcCC
Confidence 99999988899999999998754
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.83 E-value=5.8e-18 Score=148.18 Aligned_cols=241 Identities=12% Similarity=0.103 Sum_probs=174.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+|++.++++++.|++|++||..+++.+..+.....++.+.++|+++.+.+++. +..+.++++. ..+++.+
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~-----d~~V~v~D~~----~~t~~~~ 215 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-----DARIDMIDLW----AKEPTKV 215 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEET-----TSEEEEEETT----SSSCEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECC-----CCeEEEEECc----CCCCcEE
Confidence 789999999999999999999999999988885555889999998877666553 2455555541 1235566
Q ss_pred EEEecCCCCeEEEEEcC----CCCEEEEEe-CCCcEEEEECCCCceeeeccccc-------Cccc-ceEEEEEcCCCCE-
Q 024407 82 LILKGPQGRINRAVWGP----LNRTIISAG-EDAIVRIWDTETGKLLKESDKET-------GHKK-TITSLAKAADGSH- 147 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~----~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~-------~h~~-~v~~v~~s~~~~~- 147 (268)
..++. ...+..+.|+| +|+++++++ .+++|.+||..+++.+..+.... .|.. .+..+.+++++..
T Consensus 216 ~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 216 AEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 66764 44679999999 999998887 58999999999988776554210 1333 7889999997665
Q ss_pred EEEeeCCCcEEEEECCCcceee--eeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc
Q 024407 148 FLTGSLDKSAKLWDARTLELIK--TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225 (268)
Q Consensus 148 l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 225 (268)
+++...+++|.+||..+.+.+. .+.....+..+.|+|++.+++++...+ ..+..||...+.....+ +. .
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~-~~v~v~D~~tg~l~~~i-~~------g- 365 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNS-NKVAVIDSKDRRLSALV-DV------G- 365 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGG-TEEEEEETTTTEEEEEE-EC------S-
T ss_pred EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCC-CeEEEEECCCCeEEEee-cc------C-
Confidence 5567789999999998765444 444455677889999988777665433 34667888887654432 10 0
Q ss_pred ccccccceEEEEECCC-CCeEEeee-CCCeEEEEeeCCC
Q 024407 226 VKGHFGPINALAFNPD-GKSFSSGG-EDGYVRLHHFDPD 262 (268)
Q Consensus 226 ~~~h~~~v~~~~~sp~-~~~lasgs-~Dg~i~i~~~~~~ 262 (268)
...|......+ ++|+ ++.++|++ .|++|.||..+++
T Consensus 366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence 11254433333 4677 67788876 6899999999873
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=4e-18 Score=136.63 Aligned_cols=223 Identities=12% Similarity=0.055 Sum_probs=151.9
Q ss_pred EEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC-CceEEEEecC-
Q 024407 10 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG-GESVLILKGP- 87 (268)
Q Consensus 10 ~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 87 (268)
.+++.|++|++||+.+++......+...+..+.|+|.+..++++.+. .+.++++. + ++......++
T Consensus 16 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~------~i~~~d~~------~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEG------LLYRLSLA------GDPSPEKVDTGFA 83 (297)
T ss_dssp --CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETT------EEEEEESS------SCCSCEECCCTTC
T ss_pred CCCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCC------eEEEEeCC------CCCCceEeccccc
Confidence 34678999999999999887777788889999999988766665432 33444332 2 3344444555
Q ss_pred CCCeEEEEEcCCCCEEEEEe--CCCcEEEE--ECCCCceeeecccccCcccceEEEEEcCCCCEEE-EeeCCCcEEEEEC
Q 024407 88 QGRINRAVWGPLNRTIISAG--EDAIVRIW--DTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDA 162 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~--~dg~i~iw--d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~iwd~ 162 (268)
...+.++.|+|++++|++++ .++..++| |+.+++. ..+. +...+..++|+|++..++ ++..|+.+++|++
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee----cCCCccceEECCCCCEEEEEECCCCceEEEEE
Confidence 36788999999999999988 33455555 5455442 2222 223488899999999887 7888999999985
Q ss_pred --CCcceeeeeecCCceeEEEEccCCCeEEEeec-CCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 163 --RTLELIKTYVTERPVNAVTMSPLLDHVVLGGG-QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
.+++..........+..+.|+|++..+++++. .....++..+...+. ...+..|...+.+++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~s 225 (297)
T 2ojh_A 159 DIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS-------------VERITDSAYGDWFPHPS 225 (297)
T ss_dssp ETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-------------EEECCCCSEEEEEEEEC
T ss_pred ECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC-------------cEEEecCCcccCCeEEC
Confidence 44444333334557889999999887776654 333334433322221 22234566678999999
Q ss_pred CCCCeEEeeeCC-----------CeEEEEeeCCC
Q 024407 240 PDGKSFSSGGED-----------GYVRLHHFDPD 262 (268)
Q Consensus 240 p~~~~lasgs~D-----------g~i~i~~~~~~ 262 (268)
|++++|++++.+ +.|.+|++++.
T Consensus 226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 999999988876 45888888754
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.83 E-value=1.8e-17 Score=135.80 Aligned_cols=237 Identities=9% Similarity=0.042 Sum_probs=155.7
Q ss_pred CCCCCCCE-EEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMT-LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~-l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
||+++++. +++++.+++|++||+++++....+........+.++|.+..++++... ...+.+++. .+++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~i~~~d~------~~~~ 73 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDF----CQTLVQIET------QLEP 73 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEEST----TCEEEEEEC------SSSS
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCC----CCeEEEEEC------CCCc
Confidence 67887666 788899999999999999988777654332388899877654444321 113333332 2233
Q ss_pred e-EEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEe-eCC
Q 024407 80 S-VLILKGPQGRINRAVWGPLNRTIISAGEDA---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLD 154 (268)
Q Consensus 80 ~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-~~d 154 (268)
. ...+..+..+..++.|+|+|++++++..++ .|++||+.+++.+..+. .......++|+|++++++++ ..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 74 PKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP----IPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp CEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE----CCTTEEEEEECTTSSCEEEEEETT
T ss_pred eeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE----CCCCccceEECCCCCEEEEEecCC
Confidence 3 555666666666699999999998555553 89999999988766543 23446899999999866554 556
Q ss_pred Cc-EEEEECCCccee-----eeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccc
Q 024407 155 KS-AKLWDARTLELI-----KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 228 (268)
Q Consensus 155 ~~-i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
+. |.+|++.....+ ..+........+.++|++..++++...+ ..+..||...+..... +..+..
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-~~v~v~d~~~~~~~~~---------~~~~~~ 219 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG-NSIGILETQNPENITL---------LNAVGT 219 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT-TEEEEEECSSTTSCEE---------EEEEEC
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC-CeEEEEECCCCcccce---------eeeccC
Confidence 88 999998753322 2222344578899999987766655433 4566777665443000 111111
Q ss_pred cccceEEEEECCCCCeEEe-eeCCCeEEEEeeCCC
Q 024407 229 HFGPINALAFNPDGKSFSS-GGEDGYVRLHHFDPD 262 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~las-gs~Dg~i~i~~~~~~ 262 (268)
...+..++|+|||++++. ...++.|.+|+.+..
T Consensus 220 -~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 220 -NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp -SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred -CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 245678999999997654 445788999987754
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.82 E-value=2.8e-18 Score=137.47 Aligned_cols=227 Identities=15% Similarity=0.120 Sum_probs=152.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCC-CcEEEEEecC--CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVET-GAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+||+++|++++ ++.|++||+++ ++........ ..+..+.|+|++..++...... .....++.+... ++
T Consensus 49 ~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~---~~~~~l~~~~~~----~~ 120 (297)
T 2ojh_A 49 WSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE---FGKSAIYLLPST----GG 120 (297)
T ss_dssp ECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT---TSSCEEEEEETT----CC
T ss_pred ECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC---CCcceEEEEECC----CC
Confidence 899999999987 88999999998 7765544332 4577899999877665554211 122333333211 11
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECC--CCceeeecccccCcccceEEEEEcCCCCEEEEee-CC
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE--TGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LD 154 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d 154 (268)
+ ...+..+. .+..+.|+|++++|+ +++.|+.+++|+++ +++. ..+ ..+...+.+++|+|++..++.++ .+
T Consensus 121 ~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~ 194 (297)
T 2ojh_A 121 T-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRL---THGEGRNDGPDYSPDGRWIYFNSSRT 194 (297)
T ss_dssp C-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EEC---CCSSSCEEEEEECTTSSEEEEEECTT
T ss_pred c-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEc---ccCCCccccceECCCCCEEEEEecCC
Confidence 1 22333333 488899999999887 78899999999854 3332 222 24677899999999999888766 58
Q ss_pred CcEEEEECC-Ccceeeeee-cCCceeEEEEccCCCeEEEeecCCC---------ceEEEeccCCCeeeeEeeehhhhhhh
Q 024407 155 KSAKLWDAR-TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDA---------SAVTTTDHRAGKFEAKFFDKILQEEI 223 (268)
Q Consensus 155 ~~i~iwd~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~ 223 (268)
+.+++|+++ ....+..+. +...+..+.|+|++..+++++..+. ..+..||...+.... +
T Consensus 195 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----------~ 264 (297)
T 2ojh_A 195 GQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET----------L 264 (297)
T ss_dssp SSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE----------E
T ss_pred CCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee----------e
Confidence 999999876 333434433 3345778899999888777655422 346666655443211 1
Q ss_pred ccccccccceEEEEECCCCCeEEeeeCCC
Q 024407 224 GGVKGHFGPINALAFNPDGKSFSSGGEDG 252 (268)
Q Consensus 224 ~~~~~h~~~v~~~~~sp~~~~lasgs~Dg 252 (268)
..+.+|...+.+++|+|++++|++++.|.
T Consensus 265 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 265 FDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eccCCCCcccccceECCCCCEEEEEEecc
Confidence 12235667789999999999998887653
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=1.2e-17 Score=136.91 Aligned_cols=244 Identities=12% Similarity=0.110 Sum_probs=152.1
Q ss_pred CCCEEEEeecCCcEEEeecC-CC--cEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 5 NSMTLITGSADQTAKLWNVE-TG--AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
...++++++.|++|++||+. ++ +.+..+.+...+..++++|.+..++++... ...+.++.+... ......+
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~v~~~~~~~~--~~~~~~~ 77 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP----EFRVLAYRIAPD--DGALTFA 77 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT----TTEEEEEEECTT--TCCEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecC----CCeEEEEEecCC--CCceeec
Confidence 33455666889999999995 33 334455667788899999987755554432 134555554311 0111233
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee-CCCcEEE
Q 024407 82 LILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKL 159 (268)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~i 159 (268)
..+..+. .+..+.|+|+++++++++ .++.|++||+..+.......... ....+.+++|+|++.++++++ .++.|.+
T Consensus 78 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 155 (343)
T 1ri6_A 78 AESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICL 155 (343)
T ss_dssp EEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred cccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEE
Confidence 4454444 788999999999887665 48899999995332211111111 234578899999999888777 8999999
Q ss_pred EECCC-cceee----ee--ecCCceeEEEEccCCCeEEEeecCCCceEEEeccC--CCeeeeEeeehhhhhhhccccccc
Q 024407 160 WDART-LELIK----TY--VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVKGHF 230 (268)
Q Consensus 160 wd~~~-~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~h~ 230 (268)
||+.+ ++... .. .....+..+.++|++..++++...+ ..+..|+.. .+.+........ +..-....
T Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~-~~i~~~~~~~~~g~~~~~~~~~~----~~~~~~~~ 230 (343)
T 1ri6_A 156 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN-SSVDVWELKDPHGNIECVQTLDM----MPENFSDT 230 (343)
T ss_dssp EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT-TEEEEEESSCTTSCCEEEEEEEC----SCTTCCSC
T ss_pred EEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC-CEEEEEEecCCCCcEEEEeeccc----cCcccccc
Confidence 99987 54322 11 1234577899999988776665333 345556552 333221110000 00000112
Q ss_pred cceEEEEECCCCCeEE-eeeCCCeEEEEeeCC
Q 024407 231 GPINALAFNPDGKSFS-SGGEDGYVRLHHFDP 261 (268)
Q Consensus 231 ~~v~~~~~sp~~~~la-sgs~Dg~i~i~~~~~ 261 (268)
..+.+++|+|++++|+ ++..|+.|++|+++.
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 3567899999998876 566899999999983
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=6.6e-17 Score=133.28 Aligned_cols=226 Identities=14% Similarity=0.129 Sum_probs=159.2
Q ss_pred CCCCCCE-EEEeecCCcEEEeecCCCcEEEEEecCCC----------ceeeeeecCCeEEEEEcCCCcccccceEeeeee
Q 024407 2 FQANSMT-LITGSADQTAKLWNVETGAQLFTFNFDSP----------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA 70 (268)
Q Consensus 2 fs~d~~~-l~s~s~D~tv~~wd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (268)
|+||++. ++++..+++|.+||+++++.+..+..... +..+.+++.+..+.++... ....+.+++.
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~i~~~d~- 171 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG---KESVIWVVDG- 171 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES---SSCEEEEEET-
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC---CCceEEEEcC-
Confidence 7899985 55556689999999999998888775321 4678888876554443310 0122333322
Q ss_pred eCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccc-ccCcccceEEEEEcCCCCEEE
Q 024407 71 RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFL 149 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~~~~l~ 149 (268)
.+++.+..+..+...+..+.|+|+++++++++.++.|.+||+.+++....+.. ..++...+..++++|++..++
T Consensus 172 -----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 172 -----GNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp -----TTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred -----CCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 34556666665666688899999999999999999999999999887665442 223556788899999999777
Q ss_pred EeeC-CCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccc
Q 024407 150 TGSL-DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 228 (268)
Q Consensus 150 s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
+++. ++.|.+||+.+++.+..+....+ ..+.++|++..++++...+ ..+..+|...+.....+ ..
T Consensus 247 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~-~~v~~~d~~~~~~~~~~------------~~ 312 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQA-GKVSVIDAKSYKVVKTF------------DT 312 (353)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTT-TEEEEEETTTTEEEEEE------------EC
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCC-CeEEEEECCCCeEEEEE------------ec
Confidence 6654 58999999999988777665443 5688999988766665433 45777777666543221 11
Q ss_pred cccceEEEEECCCCCeEEeeeCC
Q 024407 229 HFGPINALAFNPDGKSFSSGGED 251 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~lasgs~D 251 (268)
...+.+++|+|+|++|+.+..+
T Consensus 313 -~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 313 -PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -CSEEEEEEECTTSCEEEEEEEC
T ss_pred -CCCCCeEEEcCCCCEEEEEEcc
Confidence 1357899999999976655554
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=5.3e-17 Score=134.03 Aligned_cols=242 Identities=14% Similarity=0.100 Sum_probs=149.1
Q ss_pred CCCCCCEEEEeec---CCcEEEeecCCCcE--EEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 2 FQANSMTLITGSA---DQTAKLWNVETGAQ--LFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 2 fs~d~~~l~s~s~---D~tv~~wd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
||||++ |++++. ++.|++||+.+++. +..+ .....+..++++|++..+++++.. ...+.++++...
T Consensus 47 ~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~----~~~v~v~~~~~~--- 118 (347)
T 3hfq_A 47 LSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH----KGTAEVMKIAAD--- 118 (347)
T ss_dssp ECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT----TTEEEEEEECTT---
T ss_pred EccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC----CCEEEEEEeCCC---
Confidence 799999 665554 69999999977653 3332 245678889999987755554421 233444444211
Q ss_pred CCCceEEEEec---------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeecccccCcccceEEEEEcCCC
Q 024407 76 QGGESVLILKG---------PQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADG 145 (268)
Q Consensus 76 ~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~ 145 (268)
.....+..+.. +...+.++.|+|+|+.+++...++.|++||+. +++.................++|+|||
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC
Confidence 01112222221 12348889999999966677788999999998 454322111011122356789999999
Q ss_pred CEEEE-eeCCCcEEEEECCC--cce--eeeeec-C------CceeEEEEccCCCeEEEeecCCCceEEEeccC-CCeeee
Q 024407 146 SHFLT-GSLDKSAKLWDART--LEL--IKTYVT-E------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR-AGKFEA 212 (268)
Q Consensus 146 ~~l~s-~~~d~~i~iwd~~~--~~~--~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~ 212 (268)
+++++ ...++.|.+|++.. ++. +..+.. . ..+..++++|++..++++...+ ..+..|+.. .+...
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~-~~v~v~~~~~~g~~~- 276 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY-NTLAVFAVTADGHLT- 276 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT-TEEEEEEECGGGCEE-
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC-CEEEEEEECCCCcEE-
Confidence 96665 56788999999874 332 222211 1 3467899999988776554332 334555432 11111
Q ss_pred EeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCC-CeEEEEeeCCC
Q 024407 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED-GYVRLHHFDPD 262 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~D-g~i~i~~~~~~ 262 (268)
.+..+..+...+..++|+|||++|++++.+ +.|.+|+++.+
T Consensus 277 ---------~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~ 318 (347)
T 3hfq_A 277 ---------LIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLT 318 (347)
T ss_dssp ---------EEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ---------EeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCC
Confidence 111122333457899999999988877754 89999988765
No 144
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=9.7e-18 Score=142.96 Aligned_cols=184 Identities=11% Similarity=0.084 Sum_probs=129.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCC-----------c-----EEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETG-----------A-----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH 65 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (268)
+++++.+|++++.|+ +++|+.... . ....+.+..++..++|++.+..++++.. ....++.+.
T Consensus 44 vs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~-sgs~d~~v~ 121 (434)
T 2oit_A 44 VSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM-SSEYGSIIA 121 (434)
T ss_dssp EETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE-ETTTEEEEE
T ss_pred EecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe-ccCCCceEE
Confidence 578889999999998 999875311 1 1123345567899999998776653100 011355667
Q ss_pred eeeeeeCCC-----CCCCceEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEE
Q 024407 66 VKRIARDPA-----DQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 139 (268)
Q Consensus 66 ~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v 139 (268)
+|++..... ...-.....+.+|...|+++.|+|+ +.+|++++.||+|++||+++++..... .+|...|.++
T Consensus 122 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~---~~~~~~v~~v 198 (434)
T 2oit_A 122 FFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT---LPSTVAVTSV 198 (434)
T ss_dssp EEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE---ECGGGCEEEE
T ss_pred EEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec---cCCCCceeEE
Confidence 776644210 0111224556789999999999998 789999999999999999987544322 3588899999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEECCCcceeeeeec--------CCceeEEEEccCCCeEEE
Q 024407 140 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--------ERPVNAVTMSPLLDHVVL 191 (268)
Q Consensus 140 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 191 (268)
+|+|++.+|++++.|++|++||++ ++....+.. ...+.++.|++....++.
T Consensus 199 ~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~ 257 (434)
T 2oit_A 199 CWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV 257 (434)
T ss_dssp EECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred EEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence 999999999999999999999998 444333321 126788899886544433
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=9.8e-18 Score=151.42 Aligned_cols=237 Identities=11% Similarity=0.014 Sum_probs=151.2
Q ss_pred CCCCCCEEEEeecC---------CcEEEeecCCCcEEEEEec----CCCceeeeeecCCeEEEEEcCCCcccccceEeee
Q 024407 2 FQANSMTLITGSAD---------QTAKLWNVETGAQLFTFNF----DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 68 (268)
Q Consensus 2 fs~d~~~l~s~s~D---------~tv~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (268)
|||||+.|++++.| +++.+||+++++. ..+.. ...+..+.|+|+++.++..+.. .+.+++
T Consensus 68 ~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~------~i~~~~ 140 (723)
T 1xfd_A 68 ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN------NIYYCA 140 (723)
T ss_dssp ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETT------EEEEES
T ss_pred ECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECC------eEEEEE
Confidence 89999999999875 7788999998876 33321 2237788999977655544432 233332
Q ss_pred eeeCCCCCCCceEEEEecCCCCe------------------EEEEEcCCCCEEEEEeCCC--------------------
Q 024407 69 IARDPADQGGESVLILKGPQGRI------------------NRAVWGPLNRTIISAGEDA-------------------- 110 (268)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~s~~~dg-------------------- 110 (268)
. .+++.......+...+ .++.|+|||++|++++.|+
T Consensus 141 ~------~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (723)
T 1xfd_A 141 H------VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK 214 (723)
T ss_dssp S------SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred C------CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence 2 2233444444444333 7899999999999887553
Q ss_pred --------------cEEEEECCCCceeeecccc---cCcccceEEEEEcCCCCEEEEeeC----CCcEEEEECCCcceee
Q 024407 111 --------------IVRIWDTETGKLLKESDKE---TGHKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLELIK 169 (268)
Q Consensus 111 --------------~i~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~ 169 (268)
.|++||+.+++....+... ..+...+..++|+|||..+++.+. +..|.+||+.++++..
T Consensus 215 ~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~ 294 (723)
T 1xfd_A 215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK 294 (723)
T ss_dssp EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred eccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence 7999999887753333210 113567899999999998876643 3579999999887655
Q ss_pred eeec--CCce----eEEEEccCCCeEEEe-ecCCC-----ceEEEec-cCCCeeeeEeeehhhhhhhccccccccceEE-
Q 024407 170 TYVT--ERPV----NAVTMSPLLDHVVLG-GGQDA-----SAVTTTD-HRAGKFEAKFFDKILQEEIGGVKGHFGPINA- 235 (268)
Q Consensus 170 ~~~~--~~~~----~~~~~~~~~~~~~~~-~~~~~-----~~i~~~d-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~- 235 (268)
.+.. ...+ ..+.|+|++..+++. ...++ ..++.+| ...+.. .....+..+...+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------~~~~~l~~~~~~~~~~ 364 (723)
T 1xfd_A 295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN----------DNIQSITSGDWDVTKI 364 (723)
T ss_dssp EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS----------CCCCBSCCSSSCEEEE
T ss_pred EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc----------cceeEeecCCeEEEee
Confidence 4322 1222 367899998877765 33332 2355555 221110 001222222233444
Q ss_pred EEECCCCCeEEeeeCC---CeEEEEeeCC
Q 024407 236 LAFNPDGKSFSSGGED---GYVRLHHFDP 261 (268)
Q Consensus 236 ~~~sp~~~~lasgs~D---g~i~i~~~~~ 261 (268)
++|+|||+.|+..+.+ +.++||+++.
T Consensus 365 ~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 365 LAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 6999999998766555 7899999864
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=4.5e-16 Score=129.15 Aligned_cols=244 Identities=12% Similarity=0.081 Sum_probs=144.5
Q ss_pred CCCCCCEEEEeecC----CcEEEeecCC--CcE--EEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeC
Q 024407 2 FQANSMTLITGSAD----QTAKLWNVET--GAQ--LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 72 (268)
Q Consensus 2 fs~d~~~l~s~s~D----~tv~~wd~~~--~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (268)
||||+++|++++.+ ++|++|++.. ++. +.... ....+..+.+ .+..+ ++++. ....+.++.+...
T Consensus 57 ~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l-~~~~~----~~~~v~~~~~~~~ 130 (361)
T 3scy_A 57 PSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNI-VTANY----SGGSITVFPIGQD 130 (361)
T ss_dssp ECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEE-EEEET----TTTEEEEEEBCTT
T ss_pred ECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEE-EEEEC----CCCEEEEEEeCCC
Confidence 89999999999987 8999999865 433 22222 2233455555 33333 33321 1233444444321
Q ss_pred CCCCCCceEEEEec--------CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCce------ee-e---cccccCcc
Q 024407 73 PADQGGESVLILKG--------PQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKL------LK-E---SDKETGHK 133 (268)
Q Consensus 73 ~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~------~~-~---~~~~~~h~ 133 (268)
.............+ +...+.++.|+|+|++++++ ..++.|++|++..... +. . ......+.
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 210 (361)
T 3scy_A 131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG 210 (361)
T ss_dssp SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT
T ss_pred CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC
Confidence 11111111111111 12335789999999977555 4689999998875431 11 0 00111234
Q ss_pred cceEEEEEcCCCCEEEEee-CCCcEEEEECCCcce--eeeeec----CCceeEEEEccCCCeEEEeecCCCceEEEecc-
Q 024407 134 KTITSLAKAADGSHFLTGS-LDKSAKLWDARTLEL--IKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH- 205 (268)
Q Consensus 134 ~~v~~v~~s~~~~~l~s~~-~d~~i~iwd~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~- 205 (268)
.....++|+|++.++++++ .+++|.+||+++++. +..+.. ......+.++|++..++++...+...+..|+.
T Consensus 211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 5577899999999887766 689999999986643 222211 12356899999988776655441334455443
Q ss_pred -CCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeee-CCCeEEEEeeCCC
Q 024407 206 -RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFDPD 262 (268)
Q Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs-~Dg~i~i~~~~~~ 262 (268)
..+...... .+.. ...+.+++|+|||++|++++ .++.|.+|+++.+
T Consensus 291 ~~~g~~~~~~----------~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~ 338 (361)
T 3scy_A 291 ETNGTLTKVG----------YQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQA 338 (361)
T ss_dssp TTTCCEEEEE----------EEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCCcEEEee----------EecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECC
Confidence 233322110 0111 23567899999999888777 6799999998854
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.79 E-value=6.7e-18 Score=152.95 Aligned_cols=231 Identities=8% Similarity=-0.001 Sum_probs=155.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCC---cEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETG---AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|||||+.|++++. ++|++||+.++ .......+...+..+.|+|+++.++...+. .+.++++ .++
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~------~i~~~d~------~~g 182 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR------NLWVIDL------ASG 182 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT------EEEEEET------TTT
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC------cEEEEec------CCC
Confidence 8999999999987 99999999988 443333455678899999988766555432 2333332 123
Q ss_pred ceEEEEecCCCC----------------eEEEEEcCCCCEEEEEeCCC--------------------------------
Q 024407 79 ESVLILKGPQGR----------------INRAVWGPLNRTIISAGEDA-------------------------------- 110 (268)
Q Consensus 79 ~~~~~~~~~~~~----------------v~~~~~~~~~~~l~s~~~dg-------------------------------- 110 (268)
+.......+... +..+.|+|||++|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 333333333322 47799999999999988776
Q ss_pred -cEEEEECCC-CceeeecccccCcccceEEEEEcCCCCEEEEeeC-----CCcEEEEECCCcceeeeeecCC-----cee
Q 024407 111 -IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDARTLELIKTYVTER-----PVN 178 (268)
Q Consensus 111 -~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~-----~~~ 178 (268)
.|++||+.+ ++..... ....|...+..++| |||+.|+.++. +..|.+||+.++++...+.... .+.
T Consensus 263 ~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWID-LGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEEECSSTTCCCEEEC-CCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred eEEEEEECCCCCceEEec-CCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 789999988 7654322 11247788999999 99999987654 5689999999987655543222 335
Q ss_pred EEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE-EECCCCCeEE-eeeCCC--eE
Q 024407 179 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL-AFNPDGKSFS-SGGEDG--YV 254 (268)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~sp~~~~la-sgs~Dg--~i 254 (268)
.+.|+|++..++++..++...++.++...+ ...+..|...|.++ .|+|+++.|+ +++.|+ .+
T Consensus 341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~~--------------~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~ 406 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGFQHLYRIDSKGK--------------AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARES 406 (741)
T ss_dssp CCEECTTSCEEEEECTTSSCEEEEECSSSC--------------EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred ceEECCCCeEEEEecCCCccEEEEEcCCCC--------------eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence 788999887444433333334555553322 12234556678777 5999998765 555565 89
Q ss_pred EEEeeCC
Q 024407 255 RLHHFDP 261 (268)
Q Consensus 255 ~i~~~~~ 261 (268)
+||+++.
T Consensus 407 ~l~~~~~ 413 (741)
T 2ecf_A 407 QIYAVPL 413 (741)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 9998863
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=2.5e-17 Score=148.45 Aligned_cols=236 Identities=13% Similarity=0.160 Sum_probs=149.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|||| +.++.+ .|+++++||+.+++..........+..+.|+|+++.++.+.+ ..+.++++... ....++..
T Consensus 89 ~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~------~~i~v~~~~~~-~~~~g~~~ 159 (706)
T 2z3z_A 89 DAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRN------HNLYIARGGKL-GEGMSRAI 159 (706)
T ss_dssp ETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEET------TEEEEEECBCT-TSCCCCCE
T ss_pred ECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEEC------CeEEEEecCcc-cccCCCcE
Confidence 8999 555544 469999999998877665556677889999998766555433 34444444320 00002222
Q ss_pred EEEecCCCC--------------eEEEEEcCCCCEEEEEe---------------------------------CCCcEEE
Q 024407 82 LILKGPQGR--------------INRAVWGPLNRTIISAG---------------------------------EDAIVRI 114 (268)
Q Consensus 82 ~~~~~~~~~--------------v~~~~~~~~~~~l~s~~---------------------------------~dg~i~i 114 (268)
.....+... +.++.|+|||++|++++ .+..|++
T Consensus 160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 222333332 47899999999999887 4577999
Q ss_pred EECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC-----cEEEEECCCcceeeeeec---CC---ceeEEEEc
Q 024407 115 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLELIKTYVT---ER---PVNAVTMS 183 (268)
Q Consensus 115 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~---~~---~~~~~~~~ 183 (268)
||+.+++..... ....|...+..++|+||++.|++++.|+ .|.+||+.+++....+.. .. .+..+.|+
T Consensus 240 ~d~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 318 (706)
T 2z3z_A 240 YHLATGKTVYLQ-TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL 318 (706)
T ss_dssp EETTTTEEEECC-CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred EECCCCceEeec-cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence 999988654322 1224677899999999999999888776 899999998843333321 11 13567899
Q ss_pred c--CCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE-EEECCCCCeEEeeeC-CC--eEEEE
Q 024407 184 P--LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA-LAFNPDGKSFSSGGE-DG--YVRLH 257 (268)
Q Consensus 184 ~--~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~sp~~~~lasgs~-Dg--~i~i~ 257 (268)
| ++..++++..++...++..+...+ .+..+..|...+.+ ++|+|+++.|+.++. ++ .++||
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~~~~-------------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~ 385 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDTTGR-------------LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFY 385 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEETTSC-------------EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred cCCCCEEEEEEccCCccEEEEEECCCC-------------EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence 9 776544443333333444432211 12223445556776 799999988765554 44 35666
Q ss_pred eeC
Q 024407 258 HFD 260 (268)
Q Consensus 258 ~~~ 260 (268)
.++
T Consensus 386 ~~d 388 (706)
T 2z3z_A 386 CID 388 (706)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=4.4e-17 Score=146.89 Aligned_cols=240 Identities=13% Similarity=0.141 Sum_probs=156.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCC-----CcEEEEEecCCC---------------ceeeeeecCCeEEEEEc-CCCc--
Q 024407 2 FQANSMTLITGSADQTAKLWNVET-----GAQLFTFNFDSP---------------ARSVDFAVGDKLAVITT-DPFM-- 58 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~-----~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~-- 58 (268)
|||||+.|+++ .|++|++||+.+ ++.......... +..+.|+|+++.++.+. +...
T Consensus 128 ~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~ 206 (706)
T 2z3z_A 128 FSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVK 206 (706)
T ss_dssp ECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSC
T ss_pred CCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCc
Confidence 89999999984 789999999988 765543332222 47888999876655543 1100
Q ss_pred -------------------------ccccceEeeeeeeCCCCCCCceEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCC-
Q 024407 59 -------------------------ELNSAIHVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPLNRTIISAGEDA- 110 (268)
Q Consensus 59 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg- 110 (268)
.....+.++++ .+++..... .+|...+.++.|+|+|++|++++.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 207 PTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL------ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp CEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET------TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred eEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC------CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 00112222222 223322222 14567789999999999999887775
Q ss_pred ----cEEEEECCCCceeeecccc--cCcccceEEEEEcC--CCCEEEEeeCCCcEEEEECC-Ccceeeeeec-CCceeE-
Q 024407 111 ----IVRIWDTETGKLLKESDKE--TGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDAR-TLELIKTYVT-ERPVNA- 179 (268)
Q Consensus 111 ----~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~-~~~~~~- 179 (268)
.|++||+.+++....+... ......+..++|+| |+.+++++..|+.+++|++. ++..+..+.. ...+..
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~ 360 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNF 360 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEE
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEee
Confidence 8999999998433322211 11112346789999 99999999999999999876 4454454432 334554
Q ss_pred EEEccCCCeEEEeecCCC---ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCC----C
Q 024407 180 VTMSPLLDHVVLGGGQDA---SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED----G 252 (268)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~D----g 252 (268)
+.|+|++..+++++..+. ..++.+|...+... .+ .|...+.+++|||||++|+..+.+ +
T Consensus 361 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-------------~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~ 426 (706)
T 2z3z_A 361 AGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-------------DL-TPESGMHRTQLSPDGSAIIDIFQSPTVPR 426 (706)
T ss_dssp EEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-------------ES-CCSSSEEEEEECTTSSEEEEEEECSSCSC
T ss_pred eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-------------ec-cCCCceEEEEECCCCCEEEEEecCCCCCc
Confidence 789999888877665543 45666665443311 11 244568899999999998766443 5
Q ss_pred eEEEEeeCCC
Q 024407 253 YVRLHHFDPD 262 (268)
Q Consensus 253 ~i~i~~~~~~ 262 (268)
.|++|+.++.
T Consensus 427 ~i~l~d~~~~ 436 (706)
T 2z3z_A 427 KVTVTNIGKG 436 (706)
T ss_dssp EEEEEESSSC
T ss_pred EEEEEECCCC
Confidence 6999988765
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=5.1e-18 Score=149.81 Aligned_cols=230 Identities=11% Similarity=0.064 Sum_probs=150.2
Q ss_pred CCCCCCEEEEeec-CCcEEEeecCCCcEEEEEecC-CCceeeeeecCCeEEEEEcC-CCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSA-DQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~-D~tv~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|||||+.||+++. |+++++|+++.++......+. ..+..+.|+|+ +++..+.. .. .....++.+.. + ..+
T Consensus 29 ~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g---~~~~~l~~~~~-~--~~g 101 (582)
T 3o4h_A 29 GVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKG---AEQHALFKVNT-S--RPG 101 (582)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTT---SCCEEEEEEET-T--STT
T ss_pred cCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCC---CcceEEEEEec-c--CCC
Confidence 8999999999988 999999999766554333343 35788889987 65554432 11 11222332221 0 011
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC---
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD--- 154 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d--- 154 (268)
... .+.. ...+....|+|+++. +++.+.++.+.+||+.+++...... +.. .+++|+|||..+++++.|
T Consensus 102 ~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~----~~~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 102 EEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR----LPG--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp CCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE----ESS--CEEEEEEETTEEEEEEEEETT
T ss_pred ccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec----CCC--ceEEECCCCCEEEEEEEcCCC
Confidence 111 2221 223456788998863 3444455555699998876543221 222 788999999999988877
Q ss_pred -CcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 155 -KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 155 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
..|.+||+.+++......+...+...+|+|++..++.+.......+..||...+... . +.+|...+
T Consensus 174 ~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~-----------~~~~~~~~ 240 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--D-----------LELPSKDF 240 (582)
T ss_dssp EEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--E-----------CCCSCSHH
T ss_pred CeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--E-----------ccCCCcCh
Confidence 789999999887654334455678899999988877443333346778887665543 1 12333334
Q ss_pred EEEE--------ECCCCCeEEeeeCCCeEEEEee
Q 024407 234 NALA--------FNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 234 ~~~~--------~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
..++ |+|||..+++++.||+++||.+
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 4445 9999988999999999999988
No 151
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=2.7e-16 Score=130.98 Aligned_cols=245 Identities=10% Similarity=0.086 Sum_probs=152.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecC-CCcEEEEEec--CCCceeeeeecCCeE-EEEEcC-CCc----c----cccceEeee
Q 024407 2 FQANSMTLITGSADQTAKLWNVE-TGAQLFTFNF--DSPARSVDFAVGDKL-AVITTD-PFM----E----LNSAIHVKR 68 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~-~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~-~~~----~----~~~~~~~~~ 68 (268)
|+||+++|++++.+ +|++|++. +++......+ ...+..+.++|+++. .++..+ +.. . ..+.+.++.
T Consensus 47 ~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~ 125 (365)
T 1jof_A 47 FDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFS 125 (365)
T ss_dssp ECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEE
T ss_pred ECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEc
Confidence 79999999999998 99999997 7766543332 234566888888774 232221 000 0 122344444
Q ss_pred eeeCCCCCCCceEEEEe----cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCceee--ecccccCcccceEEEE
Q 024407 69 IARDPADQGGESVLILK----GPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTE-TGKLLK--ESDKETGHKKTITSLA 140 (268)
Q Consensus 69 ~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~--~~~~~~~h~~~v~~v~ 140 (268)
+.. .++....+. .+...+.++.|+|+|++++++. .++.|++||+. +++... .+. ...|...+..++
T Consensus 126 ~~~-----~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~g~~p~~~~ 199 (365)
T 1jof_A 126 VSE-----TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-APDPGDHPRWVA 199 (365)
T ss_dssp ECT-----TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-CSSTTCCEEEEE
T ss_pred cCC-----CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe-cCCCCCCCCEeE
Confidence 421 122222222 2456789999999999887765 47899999998 676432 111 112345688999
Q ss_pred EcCCCCEEEEeeC-CCcEEEEECC--Cccee---eee---ecC----C-------ceeEEE-EccCCCeEEEeecCCC--
Q 024407 141 KAADGSHFLTGSL-DKSAKLWDAR--TLELI---KTY---VTE----R-------PVNAVT-MSPLLDHVVLGGGQDA-- 197 (268)
Q Consensus 141 ~s~~~~~l~s~~~-d~~i~iwd~~--~~~~~---~~~---~~~----~-------~~~~~~-~~~~~~~~~~~~~~~~-- 197 (268)
|+|+++++++++. +++|.+|++. +++.. ..+ ... . .+..++ ++|+++.++++.....
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~ 279 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE 279 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCC
Confidence 9999999887764 7899999765 45432 112 111 1 367889 9999887765543222
Q ss_pred --ceEEEeccC-CCeeeeEeeehhhhhhhccccccccceEEEEECC---CCCeEEeeeCC-CeEEEEeeCCC
Q 024407 198 --SAVTTTDHR-AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP---DGKSFSSGGED-GYVRLHHFDPD 262 (268)
Q Consensus 198 --~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~~~~lasgs~D-g~i~i~~~~~~ 262 (268)
..+..|+.. .+...... . ....+......++|+| ||++|++++.+ +.|+||+++++
T Consensus 280 ~~~~i~v~~~~~~g~~~~~~-~--------~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 280 LQGYIAGFKLRDCGSIEKQL-F--------LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SCCEEEEEEECTTSCEEEEE-E--------EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCeEEEEEECCCCCEEEee-e--------eeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 145555543 33322100 0 0111223356789999 89999988865 89999999877
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=1.7e-17 Score=141.47 Aligned_cols=168 Identities=12% Similarity=-0.024 Sum_probs=120.5
Q ss_pred cCCCCeEEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------ceeeecccccCcccceEEEEEcCC-CCEEEEee
Q 024407 86 GPQGRINRAVWGPLNRTII----SAGEDAIVRIWDTETG--------KLLKESDKETGHKKTITSLAKAAD-GSHFLTGS 152 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~----s~~~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~ 152 (268)
.+...|++++|+|++++|+ +|+.|+.|++||++++ +.+..+....+|...|.+++|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 3567899999999999998 7889999999998764 222233344579999999999998 78999999
Q ss_pred CCCcEEEEECCCcceeeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc
Q 024407 153 LDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 231 (268)
Q Consensus 153 ~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~ 231 (268)
.|++|++||++++..+... .+...+.+++|+|++..+++++.+ +.+..||.+ +..... +.. ... ....|..
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~d--g~v~iwd~~-~~~~~~-~~~--~~~--~~~~~~~ 241 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQN--GTVVQYLPT-LQEKKV-IPC--PPF--YESDHPV 241 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETT--SCEEEECTT-CCEEEE-ECC--CTT--CCTTSCE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCC--CcEEEEccC-Cccccc-ccC--Ccc--cCCCCce
Confidence 9999999999987654332 345679999999997777665533 346777776 222111 110 000 0013445
Q ss_pred ceEEEEECCCCCeEEe-eeCCCe------EEEEeeCC
Q 024407 232 PINALAFNPDGKSFSS-GGEDGY------VRLHHFDP 261 (268)
Q Consensus 232 ~v~~~~~sp~~~~las-gs~Dg~------i~i~~~~~ 261 (268)
.|.+++|++++.++++ +..||. +++|.++.
T Consensus 242 ~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 242 RVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred eEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 7999999999888754 444543 78888874
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.75 E-value=1.5e-16 Score=149.48 Aligned_cols=225 Identities=15% Similarity=0.108 Sum_probs=162.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC------------CCceeeeee-cCCeEEEEEcCCCcccccceEeee
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFD------------SPARSVDFA-VGDKLAVITTDPFMELNSAIHVKR 68 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 68 (268)
|||||+.|+.+ .|+.|.+||++... +..+..+ ..+..+.|+ |+++.++..... .+.++.
T Consensus 252 ~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~------~i~~~~ 323 (1045)
T 1k32_A 252 LNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG------QAFIQD 323 (1045)
T ss_dssp EEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT------EEEEEC
T ss_pred EcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcC------EEEEEc
Confidence 79999999987 58999999995443 3333321 257889999 876644443321 222222
Q ss_pred eeeCCCCCCCceEEEEecCCC-CeEEEEEcCCCCEEEEEeCCCcEE-EEECCCCceeeecccccCcccceEEEEEcCCCC
Q 024407 69 IARDPADQGGESVLILKGPQG-RINRAVWGPLNRTIISAGEDAIVR-IWDTETGKLLKESDKETGHKKTITSLAKAADGS 146 (268)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~ 146 (268)
. .++. ...+..|.. .+..+.|+ +|+.|+.++.++.+. +||+.+++.. .+ .+|...+..++|+|||.
T Consensus 324 ~------~~~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l---~~~~~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 324 V------SGTY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KF---EENLGNVFAMGVDRNGK 391 (1045)
T ss_dssp T------TSSB-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-EC---CCCCCSEEEEEECTTSS
T ss_pred C------CCCc-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Ee---cCCccceeeeEECCCCC
Confidence 1 1222 334566777 89999999 999999998888888 9999876543 22 25778899999999999
Q ss_pred EEEEeeCCCcEEEEECCCcceeeee-ecCCceeEEEEccCCCeEEEeecCC--------CceEEEeccCCCeeeeEeeeh
Q 024407 147 HFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQD--------ASAVTTTDHRAGKFEAKFFDK 217 (268)
Q Consensus 147 ~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~d~~~~~~~~~~~~~ 217 (268)
.|++++.++.|++||+.+++..... .+...+..++|+|++..++++.... ...+..||...+.
T Consensus 392 ~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-------- 463 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-------- 463 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--------
T ss_pred EEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc--------
Confidence 9999999999999999998776555 3455678899999988877665432 2356666655443
Q ss_pred hhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 218 ILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
...+..|...+.+++|+|||++|+.++.++..++|..
T Consensus 464 -----~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 464 -----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp -----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred -----EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 1223456667889999999999999998888777653
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.75 E-value=3e-16 Score=147.37 Aligned_cols=179 Identities=12% Similarity=-0.019 Sum_probs=129.7
Q ss_pred CC-CCCCEEEEeecCCcEEEeecCCCcEEEEEecCC-CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQ-ANSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs-~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|| |||+.|++++ ++.+.+|++..++......+.. .+..+.|+ ++..++..++ . ..++.+.. ..+++
T Consensus 303 ~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-----~--~~l~~~~d---~~~~~ 370 (1045)
T 1k32_A 303 FSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-----E--GDFLGIYD---YRTGK 370 (1045)
T ss_dssp EEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-----T--EEEEEEEE---TTTCC
T ss_pred ecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-----C--CceEEEEE---CCCCC
Confidence 78 9999999988 8899999998876544323344 56777888 6555554443 1 12221111 11222
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC----
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---- 155 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~---- 155 (268)
...+.+|...+..+.|+|+|++|++++.++.|++||+.+++..... .+|...+..++|+|||.+|++++.++
T Consensus 371 -~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~---~~~~~~v~~~~~SpDG~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 371 -AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE---RSREAMITDFTISDNSRFIAYGFPLKHGET 446 (1045)
T ss_dssp -EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred -ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec---cCCCCCccceEECCCCCeEEEEecCccccc
Confidence 2334478889999999999999999999999999999998765443 25778889999999999999887654
Q ss_pred ------cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCC
Q 024407 156 ------SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 196 (268)
Q Consensus 156 ------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (268)
.|++||+.+++......+......+.|+|++..+++.+...
T Consensus 447 ~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 89999999877433223445577889999998887766543
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.73 E-value=8.7e-17 Score=145.27 Aligned_cols=234 Identities=15% Similarity=0.176 Sum_probs=147.8
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCC----CceeeeeecCCeEEEEEcCCCc----ccccceEeeeeeeC
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDS----PARSVDFAVGDKLAVITTDPFM----ELNSAIHVKRIARD 72 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 72 (268)
.|+||++++++ +.|++|++||+.+++....+.... .+..+.|+|+++.++.++.... ..+..+.++++.
T Consensus 22 ~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~-- 98 (719)
T 1z68_A 22 NWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS-- 98 (719)
T ss_dssp EESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT--
T ss_pred EECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC--
Confidence 38999965555 569999999999998877665432 3889999998876655442100 012334444432
Q ss_pred CCCCCCceE--EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccce--------------
Q 024407 73 PADQGGESV--LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI-------------- 136 (268)
Q Consensus 73 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-------------- 136 (268)
+++.+ ..+ ...+..+.|+|||++|+.+. ++.|++||+.+++...... .++...+
T Consensus 99 ----~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~--~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 99 ----NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITF--NGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp ----TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCC--CCBTTTEEESSCCHHHHHHTT
T ss_pred ----CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEec--CCCcCCeEcccccceeeeecc
Confidence 22220 111 24688899999999998875 7899999998876543211 1232222
Q ss_pred ---EEEEEcCCCCEEEEeeCCC----------------------------------cEEEEECCCccee--eee------
Q 024407 137 ---TSLAKAADGSHFLTGSLDK----------------------------------SAKLWDARTLELI--KTY------ 171 (268)
Q Consensus 137 ---~~v~~s~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~--~~~------ 171 (268)
.+++|+|||..|++++.|. +|.+||+.+++.. ..+
T Consensus 169 ~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 169 ATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp CSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred cCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence 4799999999999987653 7889999987653 111
Q ss_pred -ecCCceeEEEEccCCCeEEEe-ecCC--CceEEEec----cCCCeeeeEeeehhhhhhhccc----cccccceE-----
Q 024407 172 -VTERPVNAVTMSPLLDHVVLG-GGQD--ASAVTTTD----HRAGKFEAKFFDKILQEEIGGV----KGHFGPIN----- 234 (268)
Q Consensus 172 -~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~i~~~d----~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~----- 234 (268)
.+...+..++|+|++ .+++. .... ...++.+| ...+... ..+ .+|...+.
T Consensus 249 ~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~------------~~~~~~~~~~~~~~~~~~~~ 315 (719)
T 1z68_A 249 ASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCP------------KTQEHIEESRTGWAGGFFVS 315 (719)
T ss_dssp HTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECC------------GGGEEEEECSSSCSSSSSCC
T ss_pred CCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceE------------EEEecccccCCceEccccCC
Confidence 123356889999985 44433 2221 13355555 4333211 111 24555565
Q ss_pred EEEECCCCCeEE--eeeCCCeEEEEeeC
Q 024407 235 ALAFNPDGKSFS--SGGEDGYVRLHHFD 260 (268)
Q Consensus 235 ~~~~sp~~~~la--sgs~Dg~i~i~~~~ 260 (268)
.++|+|||+.|+ +...+|..+||.++
T Consensus 316 ~~~~spdg~~l~~~~~~~~g~~~l~~~~ 343 (719)
T 1z68_A 316 TPVFSYDAISYYKIFSDKDGYKHIHYIK 343 (719)
T ss_dssp CCEECTTSSCEEEEEECTTSCEEEEEES
T ss_pred ccEECCCCCeEEEEEEccCCceEEEEEE
Confidence 789999998544 46677877776655
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.69 E-value=5.5e-14 Score=115.87 Aligned_cols=242 Identities=11% Similarity=0.086 Sum_probs=144.2
Q ss_pred EEEEee----cCCcEEEeecC--CCcEEE--EEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 8 TLITGS----ADQTAKLWNVE--TGAQLF--TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 8 ~l~s~s----~D~tv~~wd~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.|+.|+ .++.|.+|+++ +++... .......+..++++|+++++++.... -...+.++++... ...
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g----~~~ 76 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQ----TAH 76 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET---TEEEEEEEEEETT----EEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC---CCceEEEEEecCC----cEE
Confidence 355553 45678888764 454322 33445667889999988743333210 1234455554211 112
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cce--eeeccccc------CcccceEEEEEcCCCCEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTET-GKL--LKESDKET------GHKKTITSLAKAADGSHFL 149 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~--~~~~~~~~------~h~~~v~~v~~s~~~~~l~ 149 (268)
.+..+..+...+..++|+|+|++|++++ .++.|++||+.. ++. +..+.... .+...+.+++++|++..++
T Consensus 77 ~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 77 KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence 3444455677889999999999888877 789999999963 222 22221100 0223578899999999666
Q ss_pred EeeCCCcEEEEECC-Ccceee--eee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccC--CCeeeeEeeehhhhhh
Q 024407 150 TGSLDKSAKLWDAR-TLELIK--TYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEE 222 (268)
Q Consensus 150 s~~~d~~i~iwd~~-~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~ 222 (268)
+...++.|.+||+. +++... .+. ....+..++++|++..++++...+ ..+..|+.. .+.+.........+.
T Consensus 157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-~~v~v~~~~~~~g~~~~~~~~~~~~~- 234 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS-SQIASLKYDTQTGAFTQLGIVKTIPA- 234 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-TEEEEEEEETTTTEEEEEEEEESSCT-
T ss_pred EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC-CEEEEEEecCCCCceEEeeeeeecCC-
Confidence 66778999999998 443321 111 223567799999988666654433 234444332 343321100000000
Q ss_pred hccccccccceEEEEECCCCCeE-EeeeCCCeEEEEeeCC
Q 024407 223 IGGVKGHFGPINALAFNPDGKSF-SSGGEDGYVRLHHFDP 261 (268)
Q Consensus 223 ~~~~~~h~~~v~~~~~sp~~~~l-asgs~Dg~i~i~~~~~ 261 (268)
... ....+..++|+|||++| +++..++.|.+|+++.
T Consensus 235 --~~~-~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 235 --DYT-AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp --TCC-SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred --CCC-CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 000 11357899999999986 5667799999999974
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.69 E-value=5.5e-15 Score=134.11 Aligned_cols=242 Identities=10% Similarity=0.089 Sum_probs=144.5
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCC-C---c--eeeeeecCCeEEEEEcCC-Cc---ccccceEeeeee
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFNFDS-P---A--RSVDFAVGDKLAVITTDP-FM---ELNSAIHVKRIA 70 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~ 70 (268)
.|+||+.+|+++ |++|++||+++++....+..+. . + ..+.++|+++.++.+... .. .....+.++++
T Consensus 23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~- 99 (740)
T 4a5s_A 23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL- 99 (740)
T ss_dssp EECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET-
T ss_pred EECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC-
Confidence 389999999886 9999999999998776665322 1 1 236779987765554321 00 00112223332
Q ss_pred eCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccce--------------
Q 024407 71 RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI-------------- 136 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-------------- 136 (268)
.+++ ...+..|...+..+.|||||++|+.+ .|+.|++||+.+++... +.. .++...+
T Consensus 100 -----~~~~-~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~-lt~-~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 100 -----NKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR-ITW-TGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp -----TTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE-CCS-CCBTTTEEESBCCHHHHHHTS
T ss_pred -----CCCc-EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE-EcC-CCCccceecCcccccccchhc
Confidence 2232 33355677889999999999999887 57899999998876432 211 1222222
Q ss_pred ---EEEEEcCCCCEEEEeeCCC------------------------------------cEEEEECCC---cce--eeeee
Q 024407 137 ---TSLAKAADGSHFLTGSLDK------------------------------------SAKLWDART---LEL--IKTYV 172 (268)
Q Consensus 137 ---~~v~~s~~~~~l~s~~~d~------------------------------------~i~iwd~~~---~~~--~~~~~ 172 (268)
..+.|||||+.|+.++.|. +|.+||+.+ ++. ...+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 3488999999999875332 478899988 631 12222
Q ss_pred -------cCCceeEEEEccCCCeEEEeecCC--CceEEEeccCCCeeeeEeeehhhhhhhccc--cccccceE-----EE
Q 024407 173 -------TERPVNAVTMSPLLDHVVLGGGQD--ASAVTTTDHRAGKFEAKFFDKILQEEIGGV--KGHFGPIN-----AL 236 (268)
Q Consensus 173 -------~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~-----~~ 236 (268)
+...+..++|+|++..++...... ...+..+|...+.-... ......+ .+|...|. ..
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~------~~~~~~l~~~~~~~~v~~~~~~~p 324 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN------CLVARQHIEMSTTGWVGRFRPSEP 324 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE------ECGGGCEEEECSSSCSSSSSCCCC
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc------eeEEEEeeeccCCceEccCcCCCc
Confidence 233467889999876444332222 22455555444320000 0001111 23444444 68
Q ss_pred EECCCCCeEE-eee-CCCeEEEEeeC
Q 024407 237 AFNPDGKSFS-SGG-EDGYVRLHHFD 260 (268)
Q Consensus 237 ~~sp~~~~la-sgs-~Dg~i~i~~~~ 260 (268)
+|+|||+.|+ ..+ .+|.-.||.++
T Consensus 325 ~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 325 HFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp EECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred eEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 9999999876 555 56665555443
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.69 E-value=6.7e-16 Score=139.49 Aligned_cols=234 Identities=11% Similarity=0.020 Sum_probs=146.4
Q ss_pred CCCCCCEEEEeec---------CCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeC
Q 024407 2 FQANSMTLITGSA---------DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 72 (268)
Q Consensus 2 fs~d~~~l~s~s~---------D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (268)
|||||+.|++++. |++|++||+++++.+........+..+.|+|+++.++...+. .+.++++.
T Consensus 67 ~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~------~i~~~~~~-- 138 (719)
T 1z68_A 67 LSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQN------NIYLKQRP-- 138 (719)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETT------EEEEESST--
T ss_pred ECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECC------eEEEEeCC--
Confidence 8999999999987 899999999988652111223567889999977655544432 33333322
Q ss_pred CCCCCCceEE---------EEecCCCCe---------EEEEEcCCCCEEEEEeCCC------------------------
Q 024407 73 PADQGGESVL---------ILKGPQGRI---------NRAVWGPLNRTIISAGEDA------------------------ 110 (268)
Q Consensus 73 ~~~~~~~~~~---------~~~~~~~~v---------~~~~~~~~~~~l~s~~~dg------------------------ 110 (268)
+++... .+.|+...| .++.|+|||++|++++.|.
T Consensus 139 ----~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y 214 (719)
T 1z68_A 139 ----GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY 214 (719)
T ss_dssp ----TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred ----CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence 111111 122332222 4899999999999887653
Q ss_pred ----------cEEEEECCCCcee--eec---ccccCcccceEEEEEcCCCCEEEEeeCC----CcEEEEE----CCCcce
Q 024407 111 ----------IVRIWDTETGKLL--KES---DKETGHKKTITSLAKAADGSHFLTGSLD----KSAKLWD----ARTLEL 167 (268)
Q Consensus 111 ----------~i~iwd~~~~~~~--~~~---~~~~~h~~~v~~v~~s~~~~~l~s~~~d----~~i~iwd----~~~~~~ 167 (268)
.|++||+.+++.. ..+ ....+|...+..++|+||+..+++.... ..|.+|| +.++++
T Consensus 215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~ 294 (719)
T 1z68_A 215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC 294 (719)
T ss_dssp CBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred CCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence 7889999887642 111 1123577889999999998776664432 2488999 877765
Q ss_pred eeeee-----cCCcee-----EEEEccCCCeEEEe-e-cCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 168 IKTYV-----TERPVN-----AVTMSPLLDHVVLG-G-GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 168 ~~~~~-----~~~~~~-----~~~~~~~~~~~~~~-~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
...+. +...+. ...|+|++..+++. . ..+...++.+|...+. ...+..+...+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-------------~~~lt~~~~~v~~ 361 (719)
T 1z68_A 295 PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-------------AIQITSGKWEAIN 361 (719)
T ss_dssp CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-------------CEECSCSSSCEEE
T ss_pred EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-------------eEecccCceEEEE
Confidence 54431 222333 67899988866553 2 2223345555543322 1122334445777
Q ss_pred EEECCCCCeEEeeeCC-----CeEEEEeeCC
Q 024407 236 LAFNPDGKSFSSGGED-----GYVRLHHFDP 261 (268)
Q Consensus 236 ~~~sp~~~~lasgs~D-----g~i~i~~~~~ 261 (268)
+.++ +++.|+..+.+ +..++|+++.
T Consensus 362 ~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 362 IFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 7777 77776655544 8899998864
No 159
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=4.7e-13 Score=107.32 Aligned_cols=233 Identities=13% Similarity=0.154 Sum_probs=150.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC-------CCceeeeee-cCCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFD-------SPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
|+++++++++.+.++.|++||.+ ++.+..+... ..+..+++. +++.+.++.... ...+..++
T Consensus 37 ~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~----~~~i~~~d----- 106 (286)
T 1q7f_A 37 VNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP----THQIQIYN----- 106 (286)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG----GCEEEEEC-----
T ss_pred ECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC----CCEEEEEC-----
Confidence 57899999998999999999987 6666666421 235566663 455555543210 11122211
Q ss_pred CCCCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee
Q 024407 74 ADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS 152 (268)
Q Consensus 74 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~ 152 (268)
..++.+..+. .+...+..+.++|+|+.+++...++.|++||.. ++....+.. ..+...+..+++++++..+++..
T Consensus 107 --~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 107 --QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC-SKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp --TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC-TTTCSSEEEEEECSSSEEEEEEG
T ss_pred --CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCC-CCccCCcEEEEECCCCCEEEEEC
Confidence 1234444443 334578999999999988888888999999964 444443321 13445688999999999888888
Q ss_pred CCCcEEEEECCCcceeeeeecC---CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccc
Q 024407 153 LDKSAKLWDARTLELIKTYVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 229 (268)
Q Consensus 153 ~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h 229 (268)
.++.|.+||.. ++.+..+... ..+..+++++++. ++++...+...+..++.. +.....+.. ...
T Consensus 183 ~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~-g~~~~~~~~----------~~~ 249 (286)
T 1q7f_A 183 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD-GQLISALES----------KVK 249 (286)
T ss_dssp GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT-SCEEEEEEE----------SSC
T ss_pred CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCC-CCEEEEEcc----------cCC
Confidence 89999999985 4455554332 3577889999764 555443333256666643 322221110 011
Q ss_pred ccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 230 FGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 230 ~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
...+.+++++|+|+.+++ +.|+.|++|++...
T Consensus 250 ~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 250 HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 224678999999988877 57999999998653
No 160
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.66 E-value=5.3e-14 Score=114.86 Aligned_cols=196 Identities=13% Similarity=0.088 Sum_probs=135.2
Q ss_pred CCCCCCEE-EEeecCCcEEEeecCCCcEEEEEecCC------CceeeeeecCCeEEEEEcCC-----Ccc--cccceEee
Q 024407 2 FQANSMTL-ITGSADQTAKLWNVETGAQLFTFNFDS------PARSVDFAVGDKLAVITTDP-----FME--LNSAIHVK 67 (268)
Q Consensus 2 fs~d~~~l-~s~s~D~tv~~wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~ 67 (268)
|+||++.+ ++++.+++|.+||+.+++.+..+.... .+..+.+++++..++++..+ ... ....+.++
T Consensus 41 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~ 120 (337)
T 1pby_B 41 VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred EcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEE
Confidence 78999765 566678999999999999887776544 67788999877555544210 000 12333333
Q ss_pred eeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccccc-----------------
Q 024407 68 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----------------- 130 (268)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------------- 130 (268)
+. .+++.+..+.. ...+.++.|+|++++|+++ ++.|++||+.+++....+....
T Consensus 121 d~------~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 191 (337)
T 1pby_B 121 DA------ETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ 191 (337)
T ss_dssp ET------TTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred EC------CCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence 32 23445555554 3457788999999988877 6899999998876543221100
Q ss_pred ----------------------------------------------CcccceEEEEEcCCCCEEEEeeCCCcEEEEECCC
Q 024407 131 ----------------------------------------------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 131 ----------------------------------------------~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~ 164 (268)
.+...+.+++++|++.+++++ ++.|.+||+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~ 269 (337)
T 1pby_B 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence 011234568999999998888 79999999999
Q ss_pred cceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCee
Q 024407 165 LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 210 (268)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 210 (268)
++.+..+.....+..++++|++..+++++. ...+..||...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 270 NASIKRVPLPHSYYSVNVSTDGSTVWLGGA--LGDLAAYDAETLEK 313 (337)
T ss_dssp TEEEEEEECSSCCCEEEECTTSCEEEEESB--SSEEEEEETTTCCE
T ss_pred CcCcceecCCCceeeEEECCCCCEEEEEcC--CCcEEEEECcCCcE
Confidence 888877766667889999999887776633 34567777665543
No 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=6.6e-13 Score=108.91 Aligned_cols=238 Identities=14% Similarity=0.175 Sum_probs=158.7
Q ss_pred CCCCCCEEEEeecC------------------------CcEEEeecCCCcEEEEEecC--CCceeeeeecCCeEEEEEcC
Q 024407 2 FQANSMTLITGSAD------------------------QTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTD 55 (268)
Q Consensus 2 fs~d~~~l~s~s~D------------------------~tv~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 55 (268)
|+|+++++++.+.+ ++|.+||.++++....+... ..+..+++.+.+.+.++...
T Consensus 31 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~ 110 (329)
T 3fvz_A 31 LDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVA 110 (329)
T ss_dssp ECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETT
T ss_pred ECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECC
Confidence 68999999998888 47999999999887666532 34678888887776555432
Q ss_pred CCcccccceEeeeeeeCCCCCCC-ceEEEE---------ecCCCCeEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCcee
Q 024407 56 PFMELNSAIHVKRIARDPADQGG-ESVLIL---------KGPQGRINRAVWGP-LNRTIISAG-EDAIVRIWDTETGKLL 123 (268)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~v~~~~~~~-~~~~l~s~~-~dg~i~iwd~~~~~~~ 123 (268)
. ..+..+.. .+. ..+..+ .++....+.++++| +++.+++.+ .++.|++|| .+++.+
T Consensus 111 ~-----~~v~~~~~------~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 111 L-----HQVFKLDP------HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp T-----TEEEEECT------TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred C-----CEEEEEeC------CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 1 11211111 111 022223 23445688999999 788888876 699999999 456655
Q ss_pred eecccc-------cCcccceEEEEEcCC-CCEEEEeeCCCcEEEEECCCcceeeeeec---CCceeEEEEccCCCeEEEe
Q 024407 124 KESDKE-------TGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 124 ~~~~~~-------~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 192 (268)
..+... .++-.....++++++ +.++++...+++|++||+.+++.+..+.. ...+..+.++| ..++..
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~ 256 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAV 256 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEe
Confidence 544211 123345789999998 77778888899999999998887777632 34567788888 333333
Q ss_pred ecC------CCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 193 GGQ------DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 193 ~~~------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
.+. ....+..++...+.....+- ...++......++++|+|..+++...++.|++|..+++
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~---------~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFK---------PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEEC---------CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEc---------CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 322 12245566655554432211 11245566889999999988999999999999998765
No 162
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=1.4e-12 Score=104.41 Aligned_cols=221 Identities=11% Similarity=0.138 Sum_probs=153.5
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEEecCC--CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
..+++|++++.|+.|++||.++++.++.+.... .++.+.+.|++++++ +.+. .+. .+ .. +++.+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~------~V~--~~----d~-~G~~~ 68 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSK------GAK--MI----TR-DGREL 68 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBS------EEE--EE----CT-TSCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCC------CEE--EE----CC-CCCEE
Confidence 445899999999999999999999999988653 578888888887666 3221 111 11 11 46677
Q ss_pred EEEecCC-CCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeeecccc---cCcccceEEEEEcCCCCEEEEeeCCCc
Q 024407 82 LILKGPQ-GRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKE---TGHKKTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 82 ~~~~~~~-~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
..++.+. ..+.++.+.|+|+.+++.+. ++.|..+|. +++.+..+... ..+......+++.++++++++...++.
T Consensus 69 W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~ 147 (276)
T 3no2_A 69 WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE 147 (276)
T ss_dssp EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE
T ss_pred EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE
Confidence 7777653 57888999999999998887 788888886 67766544321 122234556678899999999999999
Q ss_pred EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccc-cccceEE
Q 024407 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINA 235 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~ 235 (268)
|..||.. ++.+.++..+.....+...+.+..++++ .. ...+..+|..++.....+-.. . +.+ ....+..
T Consensus 148 v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~-~~-~~~v~~~d~~tG~~~w~~~~~----~---~~~~~l~~~~~ 217 (276)
T 3no2_A 148 VREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVAC-GD-AHCFVQLNLESNRIVRRVNAN----D---IEGVQLFFVAQ 217 (276)
T ss_dssp EEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEEC-BT-TSEEEEECTTTCCEEEEEEGG----G---SBSCCCSEEEE
T ss_pred EEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEe-CC-CCeEEEEeCcCCcEEEEecCC----C---CCCcccccccc
Confidence 9999998 8888887665556666777766544443 33 335777787767664433210 0 111 1234778
Q ss_pred EEECCCCCeEEeee
Q 024407 236 LAFNPDGKSFSSGG 249 (268)
Q Consensus 236 ~~~sp~~~~lasgs 249 (268)
+...++|..+++..
T Consensus 218 ~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 218 LFPLQNGGLYICNW 231 (276)
T ss_dssp EEECTTSCEEEEEE
T ss_pred ceEcCCCCEEEEec
Confidence 88889999888763
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.63 E-value=2.4e-14 Score=126.30 Aligned_cols=220 Identities=11% Similarity=0.048 Sum_probs=140.3
Q ss_pred CCCCCCCEEEEeec---CCcEEEeecCC---CcEEEEEecCCCceeeeeecCCe-EEEEEcCCCcccccceEeeeeeeCC
Q 024407 1 MFQANSMTLITGSA---DQTAKLWNVET---GAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 1 ~fs~d~~~l~s~s~---D~tv~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
.|||| +++++++. +...++|.+.. +... .+..........++|++. +++++... ....++++.
T Consensus 71 ~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~-----~~~~l~d~~--- 140 (582)
T 3o4h_A 71 HYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATE-----DRVALYALD--- 140 (582)
T ss_dssp CTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECS-----SCEEEEEEE---
T ss_pred cCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCC-----CCceEEEcc---
Confidence 48999 88888876 66667766543 2222 333333455667787653 33333211 111244332
Q ss_pred CCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEE
Q 024407 74 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL 149 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~ 149 (268)
+++.......+. .++.|+|||++|++++.+ +.|++||+.+++.. .+ ..|...+..++|+|||+.|+
T Consensus 141 ---~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l---~~~~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 141 ---GGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VF---DSGEGSFSSASISPGMKVTA 210 (582)
T ss_dssp ---TTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EE---CCSSCEEEEEEECTTSCEEE
T ss_pred ---CCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Ee---ecCCCccccceECCCCCEEE
Confidence 233333333332 789999999999988877 78999999988754 22 35778889999999999999
Q ss_pred EeeCCC--cEEEEECCCcceeeeee-cCCceeEEE--------EccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehh
Q 024407 150 TGSLDK--SAKLWDARTLELIKTYV-TERPVNAVT--------MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 218 (268)
Q Consensus 150 s~~~d~--~i~iwd~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 218 (268)
++..++ .|.+||+.+++.. .+. +...+..+. |+|++ .++++...++ .+..|+. +...
T Consensus 211 ~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g-~~~l~~~--g~~~------- 278 (582)
T 3o4h_A 211 GLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREG-RSAVFID--GERV------- 278 (582)
T ss_dssp EEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETT-EEEEEET--TEEE-------
T ss_pred EccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCC-cEEEEEE--CCee-------
Confidence 888888 8999999988765 322 222333444 99988 5555544433 3444443 2211
Q ss_pred hhhhhccccccccceEEEEECCCCCeEEeeeCCCe-EEEEeeCC
Q 024407 219 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY-VRLHHFDP 261 (268)
Q Consensus 219 ~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~-i~i~~~~~ 261 (268)
. .+...|.+++|+ +++.+++++.+.+ -++|.++.
T Consensus 279 -----~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 279 -----E---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp -----C---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred -----c---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 1 123568899999 9999998887765 35555543
No 164
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.61 E-value=5.3e-12 Score=104.51 Aligned_cols=240 Identities=10% Similarity=0.073 Sum_probs=144.0
Q ss_pred CCEEEEee----cCCcEEEeec--CCCcEEE--EEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 6 SMTLITGS----ADQTAKLWNV--ETGAQLF--TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 6 ~~~l~s~s----~D~tv~~wd~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
...++.|+ .++.|.+|.+ ++++... .. ....+..+.++|+++.+.+++... .-...+.++.+... +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~----~ 86 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKE----K 86 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCS-STTCEEEEEEEETT----T
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCC----C
Confidence 34566664 4678999976 4454432 23 456677889999877655554310 01234444544321 1
Q ss_pred C--ceEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeeccc---cc--------CcccceEEEEEcC
Q 024407 78 G--ESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDK---ET--------GHKKTITSLAKAA 143 (268)
Q Consensus 78 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~---~~--------~h~~~v~~v~~s~ 143 (268)
+ ..+.....+......+.+ ++++|++++ .++.|.+|++.....+..+.. .. .+...+.+++|+|
T Consensus 87 g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 87 GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence 2 223334445556777777 788777665 688999999976433321110 00 1223467899999
Q ss_pred CCCEEEEee-CCCcEEEEECCCcce------e--------eeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCC
Q 024407 144 DGSHFLTGS-LDKSAKLWDARTLEL------I--------KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG 208 (268)
Q Consensus 144 ~~~~l~s~~-~d~~i~iwd~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 208 (268)
++.++++++ .++.|.+|++..... + ...........++|+|++..++++...+ ..+..|+...+
T Consensus 165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-~~v~v~~~~~g 243 (361)
T 3scy_A 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG-GTVIAFRYADG 243 (361)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-CEEEEEEEETT
T ss_pred CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC-CeEEEEEecCC
Confidence 999766554 588999998875331 1 1122344567899999987776655333 34666665544
Q ss_pred eeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeC--CCeEEEEeeCC
Q 024407 209 KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE--DGYVRLHHFDP 261 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~--Dg~i~i~~~~~ 261 (268)
...... .+.....+.....+++|+|||++|+++.. ++.|++|+++.
T Consensus 244 ~~~~~~-------~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 244 MLDEIQ-------TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp EEEEEE-------EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred ceEEeE-------EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence 332111 01112223345689999999999866555 48999999973
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.60 E-value=2.9e-13 Score=112.99 Aligned_cols=237 Identities=11% Similarity=0.006 Sum_probs=144.9
Q ss_pred CCCCCCCEEEEeec-CCc--EEEeecCCCcEEEEEecCC-CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 1 MFQANSMTLITGSA-DQT--AKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 1 ~fs~d~~~l~s~s~-D~t--v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
.|||||+.|+.++. |++ |.+||+++++......... .+....|+|+++.++..... ..+..+++ .
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~------~ 110 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-----RNLMRVDL------A 110 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-----TEEEEEET------T
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-----CeEEEEEC------C
Confidence 48999999999988 674 7888998887655443332 23467799977655544321 12223322 3
Q ss_pred CCceEEEEecCCCCeEEEE--EcCCCCEEEEE----------------------eCCCcEEEEECCCCceeeecccccCc
Q 024407 77 GGESVLILKGPQGRINRAV--WGPLNRTIISA----------------------GEDAIVRIWDTETGKLLKESDKETGH 132 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~--~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~~~~~~~~~~~h 132 (268)
+++.......+...+.... ++|++++++.. ..+..|.+||+.+++..... .+
T Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~----~~ 186 (388)
T 3pe7_A 111 TLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL----QE 186 (388)
T ss_dssp TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE----EE
T ss_pred CCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee----cC
Confidence 3445555555555554443 48999988742 34578999999988654322 24
Q ss_pred ccceEEEEEcC-CCCEEEEeeCC------CcEEEEECCCcceeeeeecC--CceeEEEEccCCCeEEEeecCCCc---eE
Q 024407 133 KKTITSLAKAA-DGSHFLTGSLD------KSAKLWDARTLELIKTYVTE--RPVNAVTMSPLLDHVVLGGGQDAS---AV 200 (268)
Q Consensus 133 ~~~v~~v~~s~-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~i 200 (268)
...+..++|+| |+..|+.++.+ ..|.++|+...+........ ..+....|+|++..++........ .+
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (388)
T 3pe7_A 187 NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI 266 (388)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceE
Confidence 56788999999 99988877653 37888888765432222222 246677899998877654433222 37
Q ss_pred EEeccCCCeeeeEeeehhhhhhhccccccccc---eEEEEECCCCCeEEee---------eCCCeEEEEeeCCC
Q 024407 201 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP---INALAFNPDGKSFSSG---------GEDGYVRLHHFDPD 262 (268)
Q Consensus 201 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~sp~~~~lasg---------s~Dg~i~i~~~~~~ 262 (268)
..+|...+...... ...++... ...++|+|||+.|+.. ..+..|.+|+.+..
T Consensus 267 ~~~d~~~g~~~~l~----------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 267 YSADPETLENRQLT----------SMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEECTTTCCEEEEE----------EECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEEecCCCceEEEE----------cCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 77887766532210 01111000 1123799999988753 45668888887754
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.60 E-value=1.7e-13 Score=114.44 Aligned_cols=239 Identities=13% Similarity=0.038 Sum_probs=139.7
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCC-ceeee--eecCCeEEEEEc-CCC-c-------------ccccc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVD--FAVGDKLAVITT-DPF-M-------------ELNSA 63 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~-~~~-~-------------~~~~~ 63 (268)
||||++.|+.++.++.|++||+.+++.......... +.... +++++..++... ... . .....
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 88 LSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 899999999999999999999999987665554332 22222 244444333211 000 0 00000
Q ss_pred eEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeeecccccCcc--c
Q 024407 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHK--K 134 (268)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~--~ 134 (268)
..++.+. ..+++ ...+..+...+..+.|+| +|++|+.++.+ ..|.++|+..++.. .+. .+. .
T Consensus 168 ~~l~~~d----~~~g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---~~~~~~ 238 (388)
T 3pe7_A 168 CRLMRVD----LKTGE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVK---THAEGE 238 (388)
T ss_dssp EEEEEEE----TTTCC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESC---CCCTTE
T ss_pred ceEEEEE----CCCCc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eee---eCCCCc
Confidence 1111111 12333 334445666789999999 99988777653 37888888765432 222 122 3
Q ss_pred ceEEEEEcCCCCEEEEeeCC-----CcEEEEECCCcceeeeeecCCc------eeEEEEccCCCeEEEeec-------CC
Q 024407 135 TITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYVTERP------VNAVTMSPLLDHVVLGGG-------QD 196 (268)
Q Consensus 135 ~v~~v~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-------~~ 196 (268)
.+...+|+|||+.|+..+.+ ..|.+||+.+++.......+.. .....|+|++..+++... ..
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 318 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN 318 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence 57788999999987654432 2399999998764322111110 112257888776665432 23
Q ss_pred CceEEEeccCCCeeeeEeeehhhhhhhcccccccc-----------ceEEEEECCCCCeEEeee-CCCeEEEEeeCCC
Q 024407 197 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-----------PINALAFNPDGKSFSSGG-EDGYVRLHHFDPD 262 (268)
Q Consensus 197 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~sp~~~~lasgs-~Dg~i~i~~~~~~ 262 (268)
...+..+|...+.... +..|.. .+.+++|+|||+.|+.++ .+|..+||.++-+
T Consensus 319 ~~~i~~~d~~~~~~~~-------------l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 319 DPFLYVFNMKNGTQHR-------------VARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp CCEEEEEETTTTEEEE-------------EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred CCEEEEEeccCCceEE-------------eccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 3456667766554321 112222 477889999999877655 5788888877644
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.58 E-value=5.5e-13 Score=109.41 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=129.7
Q ss_pred CCCCCCEE-EEeecCCcEEEeecCCCcEEEEEecCC-------CceeeeeecCCeEEEEEcCC-------CcccccceEe
Q 024407 2 FQANSMTL-ITGSADQTAKLWNVETGAQLFTFNFDS-------PARSVDFAVGDKLAVITTDP-------FMELNSAIHV 66 (268)
Q Consensus 2 fs~d~~~l-~s~s~D~tv~~wd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 66 (268)
|+||++.+ ++++.+++|.+||+++++....+.... .+..+.++|+++.++++... +......+.+
T Consensus 50 ~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~ 129 (349)
T 1jmx_B 50 MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 129 (349)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred ECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEE
Confidence 78999865 566678999999999998887776433 26788999877655554411 0000123444
Q ss_pred eeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccccc-C--------------
Q 024407 67 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET-G-------------- 131 (268)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~-------------- 131 (268)
+++.... ..+.+..+.. ...+.++.|+|+|+ +++++. .|++||+.+++....+.... +
T Consensus 130 ~d~~~~~---~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (349)
T 1jmx_B 130 FSTADGL---EAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 202 (349)
T ss_dssp EEGGGGG---GBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred EECCCcc---ccceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeec
Confidence 4433210 0111222333 33588899999999 655544 49999999887654432110 0
Q ss_pred --------------------------------------------------cccceEEEEEcC-CCCEEEEeeCCCcEEEE
Q 024407 132 --------------------------------------------------HKKTITSLAKAA-DGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 132 --------------------------------------------------h~~~v~~v~~s~-~~~~l~s~~~d~~i~iw 160 (268)
+...+..++++| ++.+++++ ++.|.+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~ 280 (349)
T 1jmx_B 203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKY 280 (349)
T ss_dssp CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEE
T ss_pred CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEE
Confidence 001345667789 99998888 8999999
Q ss_pred ECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCe
Q 024407 161 DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 209 (268)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 209 (268)
|+++++.+..+.....+..++++|++..+++++ .+ ..+..||...+.
T Consensus 281 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~-~~v~v~d~~~~~ 327 (349)
T 1jmx_B 281 DLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG-TF-NDLAVFNPDTLE 327 (349)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECSSSSCEEEES-BS-SEEEEEETTTTE
T ss_pred ECccCeEEEEEcCCCCccceEECCCCCEEEEec-CC-CeEEEEeccccc
Confidence 999998877776666678899999988777743 33 556777765544
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.58 E-value=2e-13 Score=122.18 Aligned_cols=243 Identities=14% Similarity=0.049 Sum_probs=145.6
Q ss_pred CCCCCCEEEEe--ecCCcEEEeecCCCcEEEEEe-cCCCce---------eeeee--cCCeE-EEEEcCCCcccccceEe
Q 024407 2 FQANSMTLITG--SADQTAKLWNVETGAQLFTFN-FDSPAR---------SVDFA--VGDKL-AVITTDPFMELNSAIHV 66 (268)
Q Consensus 2 fs~d~~~l~s~--s~D~tv~~wd~~~~~~~~~~~-~~~~~~---------~~~~~--~~~~~-~~~~~~~~~~~~~~~~~ 66 (268)
|+++..++++. +.|+..++|....+.....+. +...+. ...++ |+++. ++.+.+. ...+
T Consensus 31 ~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~------~~~l 104 (662)
T 3azo_A 31 AVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG------DQRL 104 (662)
T ss_dssp EETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT------TCCE
T ss_pred EcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC------CCeE
Confidence 67777777777 668999999964444333332 223333 44455 65554 4544432 1223
Q ss_pred eeeeeCCCCCCCceEEEEec-----CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------Cceeee
Q 024407 67 KRIARDPADQGGESVLILKG-----PQGRINRAVWGPLNRTIISAGED----------AIVRIWDTET------GKLLKE 125 (268)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~------~~~~~~ 125 (268)
+.+... ..++.....+.. |...+.++.|+|||++|++++.| ..|++||+.+ ++.. .
T Consensus 105 ~~~~~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~ 181 (662)
T 3azo_A 105 YAFEPD--APGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-E 181 (662)
T ss_dssp EEECTT--STTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-E
T ss_pred EEEcCC--CCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-E
Confidence 322211 001012233444 56678899999999999988877 5899999987 5432 2
Q ss_pred cccccCcccceEEEEEcCCCCEEEEeeCCC--------cEEEEECC-Cc---ceeeeeec-CCceeEEEEccCCCeEEEe
Q 024407 126 SDKETGHKKTITSLAKAADGSHFLTGSLDK--------SAKLWDAR-TL---ELIKTYVT-ERPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 126 ~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~--------~i~iwd~~-~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 192 (268)
+. ..+...+..++|+|||.+|+.++.++ .|.+||+. ++ +....... ...+..+.|+|++. +++.
T Consensus 182 l~--~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~ 258 (662)
T 3azo_A 182 LS--DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVA 258 (662)
T ss_dssp SS--CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEE
T ss_pred EE--ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEE
Confidence 21 02446777889999999999877553 79999998 45 33222222 45678899999988 4444
Q ss_pred ecCC-CceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 193 GGQD-ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 193 ~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+..+ ...++.+|...+.... +... ....... .-...+.+++|+|+++++++++. +.++||.++.
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~-l~~~--~~~~~~p-~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~ 323 (662)
T 3azo_A 259 TDRTGWWNLHRVDPATGAATQ-LCRR--EEEFAGP-LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP 323 (662)
T ss_dssp ECTTSSCEEEEECTTTCCEEE-SSCC--SSBSSCC-CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET
T ss_pred ECCCCCeEEEEEECCCCceee-cccc--cccccCc-cccccCceEeEeCCCEEEEEEEc-CccEEEEEEC
Confidence 4433 2356666654443221 1000 0000000 00001567899999999999999 9999997764
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.52 E-value=1.3e-11 Score=102.59 Aligned_cols=237 Identities=12% Similarity=0.012 Sum_probs=140.4
Q ss_pred EEEEeecC--CcEEEeec--CCCcEEE--EEe--cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 8 TLITGSAD--QTAKLWNV--ETGAQLF--TFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 8 ~l~s~s~D--~tv~~wd~--~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.|+.|+.. +.|.+|++ ++++... ... ....+..+.++|+++.+.+++.. .+.++++.. +++
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~------~v~~~~~~~-----~g~ 72 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK------KWSSFAVKS-----PTE 72 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT------EEEEEEEEE-----TTE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc------eEEEEEECC-----CCC
Confidence 46667764 56888765 4554432 221 22357789999988765554432 445555431 122
Q ss_pred eEEEEec-CCCCeEEEEEcCCCCE--EEEEe-------------CCCcEEEEECCC-Cceeeecccc-cCcccceEEEEE
Q 024407 80 SVLILKG-PQGRINRAVWGPLNRT--IISAG-------------EDAIVRIWDTET-GKLLKESDKE-TGHKKTITSLAK 141 (268)
Q Consensus 80 ~~~~~~~-~~~~v~~~~~~~~~~~--l~s~~-------------~dg~i~iwd~~~-~~~~~~~~~~-~~h~~~v~~v~~ 141 (268)
....... ..+.+.++.|+|+|++ ++++. .++.+.+|++.. ++....+... ..+...+.+++|
T Consensus 73 ~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 152 (365)
T 1jof_A 73 IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF 152 (365)
T ss_dssp EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE
T ss_pred EEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE
Confidence 2222211 1123566899999995 44553 689999999974 5543322211 013457889999
Q ss_pred cCCCCEEEEee-CCCcEEEEECC-Cccee--eeee---cCCceeEEEEccCCCeEEEeecCCCceEEE--eccCCCeeee
Q 024407 142 AADGSHFLTGS-LDKSAKLWDAR-TLELI--KTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTT--TDHRAGKFEA 212 (268)
Q Consensus 142 s~~~~~l~s~~-~d~~i~iwd~~-~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~d~~~~~~~~ 212 (268)
+|||++++++. .+++|.+||+. +++.. ..+. +...+..++++|++..++++...+. .+.. ++...+....
T Consensus 153 spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 153 DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN-RICEYVIDPATHMPVY 231 (365)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT-EEEEEEECTTTCCEEE
T ss_pred CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC-eEEEEEEeCCCCcEEE
Confidence 99999888765 46899999998 66542 2232 1345788999999887766654332 3333 3443444321
Q ss_pred --Eeeehhhhhhhcccccccc------ceEEEE-ECCCCCeEEeeeCCC------eEEEEeeC
Q 024407 213 --KFFDKILQEEIGGVKGHFG------PINALA-FNPDGKSFSSGGEDG------YVRLHHFD 260 (268)
Q Consensus 213 --~~~~~~~~~~~~~~~~h~~------~v~~~~-~sp~~~~lasgs~Dg------~i~i~~~~ 260 (268)
...... + ....+|.. .+..++ |+|||++|++++.+. .|++|+++
T Consensus 232 ~~~~~~~~-~---~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 232 THHSFPLI-P---PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEEEEESS-C---TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred ccceEEcC-C---CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 001000 0 00123332 578999 999999887665432 89999996
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.51 E-value=6.2e-12 Score=104.97 Aligned_cols=231 Identities=13% Similarity=0.100 Sum_probs=133.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEc----------------CCCc-cc----
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITT----------------DPFM-EL---- 60 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-~~---- 60 (268)
||||++.|+.++.++.|++||+.+++.......... +.+.+..++... ++.. ..
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 88 ISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred ECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 799999999999999999999998876554442221 222211111100 0000 00
Q ss_pred --ccceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeeecccccC
Q 024407 61 --NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETG 131 (268)
Q Consensus 61 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~ 131 (268)
.....++.+. ..+++... +..+...+..+.|+| ++++|+.++.+ ..|.+||+..++... +.. .
T Consensus 163 ~~~~~~~l~~~d----~~~g~~~~-~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~--~ 234 (396)
T 3c5m_A 163 HTNPTCRLIKVD----IETGELEV-IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKE--H 234 (396)
T ss_dssp HTCCCEEEEEEE----TTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSC--C
T ss_pred cCCCcceEEEEE----CCCCcEEe-eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eec--c
Confidence 0111111111 12333332 334567789999999 78877665543 468889987654322 211 1
Q ss_pred c-ccceEEEEEcCCCCEEEEeeCC-----CcEEEEECCCcceeeeeecCCceeEEEEcc-CCCeEEEeecC---------
Q 024407 132 H-KKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLELIKTYVTERPVNAVTMSP-LLDHVVLGGGQ--------- 195 (268)
Q Consensus 132 h-~~~v~~v~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------- 195 (268)
. ...+..++|+|++..|+.++.+ +.|.+||+.+++.......+ ... ..|+| ++..++.+...
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC--------
T ss_pred CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeecccc
Confidence 1 2357788999999988777554 44999999887653322222 223 78898 87755553321
Q ss_pred -----CCceEEEeccCCCeeeeEeeehhhhhhhcccccccc-----------ceEEEEECCCCCeEEeeeC-CCeEEEEe
Q 024407 196 -----DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-----------PINALAFNPDGKSFSSGGE-DGYVRLHH 258 (268)
Q Consensus 196 -----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~sp~~~~lasgs~-Dg~i~i~~ 258 (268)
....+..+|...+... .+..+.. .+.+++|+|||+.|+.++. ++...||.
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~~-------------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSAQ-------------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp --CCCCCCEEEEEETTTTBCC-------------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ccccCCCCcEEEEecccCceE-------------EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 2234555655443321 1122222 2556789999998876664 66777776
Q ss_pred eC
Q 024407 259 FD 260 (268)
Q Consensus 259 ~~ 260 (268)
++
T Consensus 380 ~~ 381 (396)
T 3c5m_A 380 AD 381 (396)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 171
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.50 E-value=1.9e-11 Score=110.33 Aligned_cols=240 Identities=13% Similarity=0.041 Sum_probs=141.5
Q ss_pred CCCCCCEEEEeecCC-----cEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEc-CCCc----------ccccceE
Q 024407 2 FQANSMTLITGSADQ-----TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITT-DPFM----------ELNSAIH 65 (268)
Q Consensus 2 fs~d~~~l~s~s~D~-----tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~ 65 (268)
|||||++||.++.++ +|++||+++++..........+..+.|+|+++.++.+. +... .....+.
T Consensus 132 ~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (710)
T 2xdw_A 132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211 (710)
T ss_dssp ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE
T ss_pred ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEE
Confidence 899999998776654 89999999988765333333467789998776554443 2210 0011122
Q ss_pred eeeeeeCCCCCCCceEEEEec--CCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCC------Cc-eeeecccccC
Q 024407 66 VKRIARDPADQGGESVLILKG--PQGRINRAVWGPLNRTIISAGE-----DAIVRIWDTET------GK-LLKESDKETG 131 (268)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~ 131 (268)
.+++... ..+....+.+ |...+..+.|+|||++|+.++. +..|++||+.+ +. ....+. .
T Consensus 212 ~~~l~t~----~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~---~ 284 (710)
T 2xdw_A 212 YHVLGTD----QSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI---D 284 (710)
T ss_dssp EEETTSC----GGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE---C
T ss_pred EEECCCC----cccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee---C
Confidence 3332111 1111233333 4556789999999999887654 67899999976 42 122222 2
Q ss_pred cccceEEEEEcCCCCEEEEeeCC----CcEEEEECCCcce--eeeeecC---CceeEEEEccCCCeEEEeecCCC-ceEE
Q 024407 132 HKKTITSLAKAADGSHFLTGSLD----KSAKLWDARTLEL--IKTYVTE---RPVNAVTMSPLLDHVVLGGGQDA-SAVT 201 (268)
Q Consensus 132 h~~~v~~v~~s~~~~~l~s~~~d----~~i~iwd~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 201 (268)
+...+.. .++++|..|+..+.. ..|.+||+.+++. ...+..+ ..+..+.+++. +.++++...++ ..+.
T Consensus 285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~lv~~~~~~g~~~l~ 362 (710)
T 2xdw_A 285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS-NFLVLCYLHDVKNTLQ 362 (710)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT-TEEEEEEEETTEEEEE
T ss_pred CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC-CEEEEEEEECCEEEEE
Confidence 3333433 478889888766553 3599999987641 2233222 24566777753 45555444443 2355
Q ss_pred EeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEE----eeeCCCeEEEEeeCCC
Q 024407 202 TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS----SGGEDGYVRLHHFDPD 262 (268)
Q Consensus 202 ~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~la----sgs~Dg~i~i~~~~~~ 262 (268)
.++...+.. +..+..+...+..++++|+++.++ +....++|.+|++...
T Consensus 363 ~~~~~~g~~------------~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 363 LHDLATGAL------------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEETTTCCE------------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEECCCCCE------------EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 555433321 112233456688899999987655 2234578888887653
No 172
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.48 E-value=4.2e-11 Score=98.12 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=147.2
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
++++.++...+++|.+||+++++.+..+.....+..+.+++++.+.++... ...+.+.+. .+++....+
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~-----~~~v~~iD~------~t~~~~~~i 121 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIW-----DYRIFIINP------KTYEITGYI 121 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBS-----CSEEEEEET------TTTEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECC-----CCeEEEEEC------CCCeEEEEE
Confidence 345666677789999999999999888876666788888777755444311 122222221 233333344
Q ss_pred ecCC-----CCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC---
Q 024407 85 KGPQ-----GRINRAVWGPLNRTIISAG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD--- 154 (268)
Q Consensus 85 ~~~~-----~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d--- 154 (268)
.... .....+.+ +++.++.+. .++.|.++|+.+++....+.. ......+++++++.+++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----g~~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----GIQPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----SSCBCCCEECTTSEEEEEBCCBCTT
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----CCCccceEEcCCCCEEEEECCCccC
Confidence 4222 13455666 345554444 489999999999887665542 1234567889999987777665
Q ss_pred -------CcEEEEECCCcceeeeeec--CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc
Q 024407 155 -------KSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 225 (268)
Q Consensus 155 -------~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 225 (268)
+.|.++|.++++.+..+.. ......++++|+++.++++.. .+..+|...+...... .
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~----~v~~~d~~t~~~~~~~----------~ 261 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN----DIWRMPVEADRVPVRP----------F 261 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS----SEEEEETTCSSCCSSC----------S
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc----EEEEEECCCCceeeee----------e
Confidence 7899999999887766654 236789999998887776543 4556666544431100 0
Q ss_pred ccccccceEEEEECC-CCCeEEee----eCCCeEEEEeeCCC
Q 024407 226 VKGHFGPINALAFNP-DGKSFSSG----GEDGYVRLHHFDPD 262 (268)
Q Consensus 226 ~~~h~~~v~~~~~sp-~~~~lasg----s~Dg~i~i~~~~~~ 262 (268)
+.........++++| +++.+++. ..++.|.+|+.+++
T Consensus 262 ~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~ 303 (328)
T 3dsm_A 262 LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGK 303 (328)
T ss_dssp BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCC
T ss_pred ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCC
Confidence 111123577899999 56667776 67889999887754
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.47 E-value=2.1e-11 Score=100.18 Aligned_cols=218 Identities=13% Similarity=0.072 Sum_probs=130.5
Q ss_pred CCCEEEEe---------ecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 5 NSMTLITG---------SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 5 d~~~l~s~---------s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
||+.++.. +.++.|.+||+++++... + ..+..+.|+|+++.++....... .....++.+. .
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg~~la~~~~~~~--~~~~~l~~~~----~ 92 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I---ENATMPRISPDGKKIAFMRANEE--KKVSEIWVAD----L 92 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E---ESCEEEEECTTSSEEEEEEEETT--TTEEEEEEEE----T
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c---ccCCCeEECCCCCEEEEEEeccC--CCcceEEEEE----C
Confidence 56666543 347789999999886533 3 45778899997765444321100 0111222221 1
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCC---------------------------CcEEEEECCCCceeeeccc
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLNRTIISAGED---------------------------AIVRIWDTETGKLLKESDK 128 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------------------------g~i~iwd~~~~~~~~~~~~ 128 (268)
.+++.......+ . +..+.|+|+|+.|+.++.+ ..|.+||+.+++.+..+..
T Consensus 93 ~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~ 170 (347)
T 2gop_A 93 ETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK 170 (347)
T ss_dssp TTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE
T ss_pred CCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC
Confidence 234444433333 3 8999999999998877632 5789999988875344331
Q ss_pred ccCcccceEEEEEcCCCCEEEEeeCCC-------cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCC-----
Q 024407 129 ETGHKKTITSLAKAADGSHFLTGSLDK-------SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD----- 196 (268)
Q Consensus 129 ~~~h~~~v~~v~~s~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 196 (268)
. .+..++|+||+ +++++..+. ...+|.+.+++. ..+....... .++|++..+++.+...
T Consensus 171 ----~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~~~~~--~~spdg~~l~~~~~~~~~~~~ 241 (347)
T 2gop_A 171 ----P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEKVSFY--AVDSDGERILLYGKPEKKYMS 241 (347)
T ss_dssp ----E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEEESEE--EEEECSSCEEEEECCSSSCCC
T ss_pred ----C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccCccee--eECCCCCEEEEEEccccCCcc
Confidence 2 67789999999 777776542 334444434433 2222222222 3388888777665432
Q ss_pred -CceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE-EEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 197 -ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA-LAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 197 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
...++.+| .+... .....|...+.. +.|+ |+ .+++++.|+.++|| ++
T Consensus 242 ~~~~l~~~d--~~~~~------------~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 242 EHNKLYIYD--GKEVM------------GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp SSCEEEEEC--SSCEE------------ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred ccceEEEEC--CCceE------------eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 23455555 22211 112234556776 8999 88 88899999999999 86
No 174
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.46 E-value=3.7e-11 Score=95.15 Aligned_cols=232 Identities=6% Similarity=-0.058 Sum_probs=141.6
Q ss_pred CCCCCCEEE-EeecCCcEEEeecCCCcEEEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLI-TGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~-s~s~D~tv~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|++++++++ +.+.++.|.+||..+....... .....+..+.+.+.+.+.++..+ ..+..++. .+ .
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~------~~i~~~d~------~~-~ 97 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFN------NRVVTLAA------GS-N 97 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETT------TEEEEECT------TC-S
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCC------CEEEEEeC------CC-c
Confidence 578898777 5578899999997665432211 11234667777776665554321 11211111 11 1
Q ss_pred eEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 80 SVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 80 ~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
....+. .....+..+.++|+|+.+++...++.|.+||..+....... ......+..+++++++..+++...++.|.
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP---FTGLNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC---CCSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec---cccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence 111222 22356889999999998887778899999986654332211 11223567889999999777777788999
Q ss_pred EEECCCcceeeeeecC-CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEE
Q 024407 159 LWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 237 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 237 (268)
+||............. ..+..+++++.+ .++++...+ ..+..++........ ....+...+.+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~-~~v~~~~~~~~~~~~------------~~~~~~~~p~~i~ 240 (270)
T 1rwi_B 175 KLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNT-NQVVKLLAGSTTSTV------------LPFTGLNTPLAVA 240 (270)
T ss_dssp EECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTT-SCEEEECTTCSCCEE------------CCCCSCSCEEEEE
T ss_pred EEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCC-CcEEEEcCCCCccee------------eccCCCCCceeEE
Confidence 9998876543322222 456788888876 555544332 234445443222110 0112234678999
Q ss_pred ECCCCCeEEeeeCCCeEEEEeeCCCc
Q 024407 238 FNPDGKSFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 238 ~sp~~~~lasgs~Dg~i~i~~~~~~~ 263 (268)
++|+|+.+++...++.|++++.+.+.
T Consensus 241 ~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 241 VDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99999999999999999999988663
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.46 E-value=6e-12 Score=112.53 Aligned_cols=240 Identities=12% Similarity=0.043 Sum_probs=133.9
Q ss_pred CCCCCE-EEEeec-CCcEEEeecC--C-CcEEEEEec------CCCceeeeeecCCeEEEEEcCCCc-----ccccceEe
Q 024407 3 QANSMT-LITGSA-DQTAKLWNVE--T-GAQLFTFNF------DSPARSVDFAVGDKLAVITTDPFM-----ELNSAIHV 66 (268)
Q Consensus 3 s~d~~~-l~s~s~-D~tv~~wd~~--~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 66 (268)
|||++. |+.++. +..|.+|++. . +.. ..+.. ...+..+.|+|+++.++..+.... .....+..
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 599998 665543 5666666665 2 332 22221 234667889997765554432100 00012222
Q ss_pred eeeeeCCCCCCCceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CCc--eeeecccccCccc
Q 024407 67 KRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGED--------AIVRIWDTE-TGK--LLKESDKETGHKK 134 (268)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~--~~~~~~~~~~h~~ 134 (268)
+++......+.++ ...+. .+...+..+.|+|||++|+.++.+ ..|++||+. +++ ....+. .+|..
T Consensus 166 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~~~~~ 242 (662)
T 3azo_A 166 VPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--GGPEE 242 (662)
T ss_dssp EETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--EETTB
T ss_pred EECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--CCCCc
Confidence 2221100000022 23344 555677889999999999887755 379999998 562 222221 23467
Q ss_pred ceEEEEEcCCCCEEEEeeCCC--cEEEEECCCcceeeeeecCCc---------eeEEEEccCCCeEEEeecCCCceEEEe
Q 024407 135 TITSLAKAADGSHFLTGSLDK--SAKLWDARTLELIKTYVTERP---------VNAVTMSPLLDHVVLGGGQDASAVTTT 203 (268)
Q Consensus 135 ~v~~v~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~ 203 (268)
.+..++|+|||.+++++..++ .|.+||+.+++.......... ...+.++|.+..++.+.. ....++..
T Consensus 243 ~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 888999999999778888888 566677666654332222111 345666776554444433 33334443
Q ss_pred ccCCCeeeeEeeehhhhhhhccccccccceEEE-EECCCCCeEEeeeCCCeEEEEeeC
Q 024407 204 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL-AFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
|...+. +..+..|...+..+ +++++.-++++++.+....||.++
T Consensus 322 d~~~~~-------------~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 322 DPESGE-------------LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp ETTTTE-------------EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred ECCCCc-------------EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 433332 12234455567666 555544456677777777777765
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.46 E-value=8.1e-11 Score=94.73 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=137.4
Q ss_pred CCCCCC-EEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSM-TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~-~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|+|+++ +++++..++.|.+||.+++ ...+. ....+..+.+.+++.+.++.... ..+..++. .+++
T Consensus 35 ~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~-----~~i~~~d~------~~g~ 101 (296)
T 3e5z_A 35 YVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGL-----RRLERQRE------PGGE 101 (296)
T ss_dssp EEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTT-----TEEEEECS------TTCC
T ss_pred EeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCC-----CeEEEEcC------CCCc
Confidence 789998 8889999999999999887 44444 34457788888877765554321 11111111 1222
Q ss_pred eEEEEec----CCCCeEEEEEcCCCCEEEEE----e-------------CCCcEEEEECCCCceeeecccccCcccceEE
Q 024407 80 SVLILKG----PQGRINRAVWGPLNRTIISA----G-------------EDAIVRIWDTETGKLLKESDKETGHKKTITS 138 (268)
Q Consensus 80 ~~~~~~~----~~~~v~~~~~~~~~~~l~s~----~-------------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 138 (268)
....... ....++++.++|+|+.+++. + ..+.|..+|.. ++... +. .+......
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~---~~~~~~~g 176 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-PI---RDRVKPNG 176 (296)
T ss_dssp EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-EE---CCCSSEEE
T ss_pred EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE-ee---cCCCCCcc
Confidence 2222111 12346789999999988873 3 13456666655 43322 21 24456788
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEECC-Ccce---eeee-ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeE
Q 024407 139 LAKAADGSHFLTGSLDKSAKLWDAR-TLEL---IKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK 213 (268)
Q Consensus 139 v~~s~~~~~l~s~~~d~~i~iwd~~-~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 213 (268)
++++|++..+++.+.++.|.+||+. .++. ...+ .....+..+++++.+. ++++. ...+..++.. +....
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~---~~~v~~~~~~-g~~~~- 250 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA---GDGVHVLTPD-GDELG- 250 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE---TTEEEEECTT-SCEEE-
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc---CCeEEEECCC-CCEEE-
Confidence 9999999988777888999999987 3433 1122 1122345678888764 44444 2345556654 22211
Q ss_pred eeehhhhhhhccccccccceEEEEE-CCCCCeEEeeeCCCeEEEEeeCCCccee
Q 024407 214 FFDKILQEEIGGVKGHFGPINALAF-NPDGKSFSSGGEDGYVRLHHFDPDYFNI 266 (268)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~~~~-sp~~~~lasgs~Dg~i~i~~~~~~~~~~ 266 (268)
.+..+.. +++++| +|+++.|..++.+ .+|+++.+-..|
T Consensus 251 -----------~~~~~~~-~~~~~f~~~d~~~L~v~t~~---~l~~~~~~~~~~ 289 (296)
T 3e5z_A 251 -----------RVLTPQT-TSNLCFGGPEGRTLYMTVST---EFWSIETNVRGL 289 (296)
T ss_dssp -----------EEECSSC-CCEEEEESTTSCEEEEEETT---EEEEEECSCCBC
T ss_pred -----------EEECCCC-ceeEEEECCCCCEEEEEcCC---eEEEEEcccccc
Confidence 1223334 889999 6899988888877 456666554444
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.45 E-value=3.4e-11 Score=100.05 Aligned_cols=148 Identities=11% Similarity=0.015 Sum_probs=92.9
Q ss_pred CCCCEEEEee------cCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCC-----CcccccceEeeeeeeC
Q 024407 4 ANSMTLITGS------ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP-----FMELNSAIHVKRIARD 72 (268)
Q Consensus 4 ~d~~~l~s~s------~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 72 (268)
++++.++.+. .|++|.+||.++++.+..+...... .+.++|+++.+.+++.. .......+.+++.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~--- 88 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA--- 88 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET---
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC---
Confidence 4677777654 4789999999999988777654444 88899988776665420 0011223334332
Q ss_pred CCCCCCceEEEEecC------CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeee-cccccCcccceEEEEEcC
Q 024407 73 PADQGGESVLILKGP------QGRINRAVWGPLNRTIISAGE--DAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAA 143 (268)
Q Consensus 73 ~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~s~ 143 (268)
.+.+.+..+... ......+.++|+|++|+++.. +++|.+||+.+++.+.. +... ++ ..+.+.|
T Consensus 89 ---~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~----~~v~~~p 160 (361)
T 2oiz_A 89 ---DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GC----WSVIPQP 160 (361)
T ss_dssp ---TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TE----EEEEECT
T ss_pred ---cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-Cc----ceeEEcC
Confidence 234555555432 234677899999999988763 68999999999987766 4321 11 1133344
Q ss_pred CC-CEEEEeeCCCcEEEEECC
Q 024407 144 DG-SHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 144 ~~-~~l~s~~~d~~i~iwd~~ 163 (268)
++ ..+++.+.||++.+|++.
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEEC
T ss_pred CCCeeEEEECCCCcEEEEEEC
Confidence 43 445555666666666553
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.45 E-value=1.4e-11 Score=102.86 Aligned_cols=232 Identities=12% Similarity=0.011 Sum_probs=136.3
Q ss_pred CCCCCCCEEEEeecC---CcEEEeecCCCcEEEEEecCCC-ceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 1 MFQANSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D---~tv~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
.|||||+.|+.++.+ ..|.+||+++++.......... .....|+|+++.++...... .+.++++ .
T Consensus 42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-----~l~~~d~------~ 110 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNEL-----NLMKVDL------E 110 (396)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTT-----EEEEEET------T
T ss_pred cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCC-----cEEEEEC------C
Confidence 389999998776543 4688889988765433222222 22367888776554433211 1222221 2
Q ss_pred CCceEEEEecCCCCeEE-------------------EEEcCCCCEEEEE-----eCCCcEEEEECCCCceeeecccccCc
Q 024407 77 GGESVLILKGPQGRINR-------------------AVWGPLNRTIISA-----GEDAIVRIWDTETGKLLKESDKETGH 132 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~h 132 (268)
+++.......+...... ..|+|+++.++.+ ..+..|.+||+.+++..... .+
T Consensus 111 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~----~~ 186 (396)
T 3c5m_A 111 TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH----QD 186 (396)
T ss_dssp TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE----EE
T ss_pred CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec----cC
Confidence 23333333333332222 3467888766544 46678999999987654322 24
Q ss_pred ccceEEEEEcC-CCCEEEEeeCC------CcEEEEECCCcceeeeeec--CCceeEEEEccCCCeEEEeecC-CC--ceE
Q 024407 133 KKTITSLAKAA-DGSHFLTGSLD------KSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGGGQ-DA--SAV 200 (268)
Q Consensus 133 ~~~v~~v~~s~-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~--~~i 200 (268)
...+..+.|+| ++..|+.++.+ ..|.+||+..++....... ...+..+.|+|++..+++.... +. ..+
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 56788899999 78877765543 4688899876543222221 1246678999998876665432 22 236
Q ss_pred EEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC-CCCeEEeee----------------CCCeEEEEeeCCC
Q 024407 201 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFSSGG----------------EDGYVRLHHFDPD 262 (268)
Q Consensus 201 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~lasgs----------------~Dg~i~i~~~~~~ 262 (268)
..+|...+..... ....+ .. +.|+| ||+++++++ .++.|.+|+.+..
T Consensus 267 ~~~d~~~g~~~~l----------~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 267 YKANPETLENEEV----------MVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEECTTTCCEEEE----------EECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred EEEECCCCCeEEe----------eeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 6777655443211 00111 22 88999 999988755 2467888877644
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.41 E-value=4.2e-10 Score=91.95 Aligned_cols=240 Identities=11% Similarity=0.030 Sum_probs=138.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEE-ecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|++++++++..++.|.+||+++++..... .....+..+.+.+.+.+.++...... ....+..++. .++..
T Consensus 52 ~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~-~~~~i~~~d~------~~~~~ 124 (333)
T 2dg1_A 52 FDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFK-STGGIFAATE------NGDNL 124 (333)
T ss_dssp ECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSS-SCCEEEEECT------TSCSC
T ss_pred ECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCC-CCceEEEEeC------CCCEE
Confidence 6899998888999999999999888765544 34556788888887776665432200 0011111111 12222
Q ss_pred EEEEe--cCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEE-Ee
Q 024407 81 VLILK--GPQGRINRAVWGPLNRTIISAGE------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TG 151 (268)
Q Consensus 81 ~~~~~--~~~~~v~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~ 151 (268)
...+. .+...+.++.++|+|+.+++... .+.|..+|..+++..... .....+..+++++++..++ +.
T Consensus 125 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~i~~~~dg~~l~v~~ 200 (333)
T 2dg1_A 125 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII----QNISVANGIALSTDEKVLWVTE 200 (333)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE----EEESSEEEEEECTTSSEEEEEE
T ss_pred EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee----cCCCcccceEECCCCCEEEEEe
Confidence 21222 23457899999999988776654 355666676654432211 1234577899999998654 55
Q ss_pred eCCCcEEEEECCC-cceeeee--------ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhh
Q 024407 152 SLDKSAKLWDART-LELIKTY--------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 222 (268)
Q Consensus 152 ~~d~~i~iwd~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 222 (268)
+.++.|.+||+++ +..+..+ .....+..+.+++.+. ++++...+ ..+..+|.. +.....+ .. +.
T Consensus 201 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~-~~v~~~d~~-g~~~~~~-~~--~~- 273 (333)
T 2dg1_A 201 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQ-GRVLVFNKR-GYPIGQI-LI--PG- 273 (333)
T ss_dssp GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETT-TEEEEECTT-SCEEEEE-EC--TT-
T ss_pred CCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC-EEEEEcCC-CEEEEECCC-CCEEEEE-Ec--CC-
Confidence 5688999999963 3322211 1112456788888764 44443222 245556653 2221111 10 00
Q ss_pred hccccccccceEEEEECCCCCeEEeeeCCC----eEEEEeeCC
Q 024407 223 IGGVKGHFGPINALAFNPDGKSFSSGGEDG----YVRLHHFDP 261 (268)
Q Consensus 223 ~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg----~i~i~~~~~ 261 (268)
...+|...+.+++|+||++.|..++.++ .-.||+++.
T Consensus 274 --~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 274 --RDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp --GGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred --CccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 0012333688999999987765555443 345565543
No 180
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.41 E-value=8.6e-12 Score=113.13 Aligned_cols=193 Identities=8% Similarity=-0.036 Sum_probs=116.0
Q ss_pred CCCCCCEEEEeecCC---------cEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeC
Q 024407 2 FQANSMTLITGSADQ---------TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 72 (268)
Q Consensus 2 fs~d~~~l~s~s~D~---------tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (268)
|||||+.|+.++.++ .+.+||+++++......+...+....|+|+++.++...+. .+.++...
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~------~i~~~~~~-- 140 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNN------DIYVKIEP-- 140 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETT------EEEEESST--
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECC------eEEEEECC--
Confidence 699999999999884 4569999998754322345668889999977655544432 22222221
Q ss_pred CCCCCCceEE---------EEecCCC---------CeEEEEEcCCCCEEEEEeCCC------------------------
Q 024407 73 PADQGGESVL---------ILKGPQG---------RINRAVWGPLNRTIISAGEDA------------------------ 110 (268)
Q Consensus 73 ~~~~~~~~~~---------~~~~~~~---------~v~~~~~~~~~~~l~s~~~dg------------------------ 110 (268)
++.... .+.|+.. ....+.|||||++|+.++.|.
T Consensus 141 ----~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 141 ----NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ----TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred ----CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 111111 1222221 123489999999998875332
Q ss_pred ------------cEEEEECCC---Cce--eeecccc---cCcccceEEEEEcCCCCEEEEeeC----CCcEEEEECCCcc
Q 024407 111 ------------IVRIWDTET---GKL--LKESDKE---TGHKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLE 166 (268)
Q Consensus 111 ------------~i~iwd~~~---~~~--~~~~~~~---~~h~~~v~~v~~s~~~~~l~s~~~----d~~i~iwd~~~~~ 166 (268)
.|++||+.+ ++. ...+... .+|...+..++|+|||+.++.... +..|.+||+.+++
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 478899988 631 1222110 137778999999999997665432 3479999998876
Q ss_pred ----eee--ee---ecCCc-----eeEEEEccCCCeEE-EeecCC-CceEEEeccC
Q 024407 167 ----LIK--TY---VTERP-----VNAVTMSPLLDHVV-LGGGQD-ASAVTTTDHR 206 (268)
Q Consensus 167 ----~~~--~~---~~~~~-----~~~~~~~~~~~~~~-~~~~~~-~~~i~~~d~~ 206 (268)
+.. .+ .+... .....|+|++..++ ..+..+ ...+..+|..
T Consensus 297 ~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred cccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence 221 11 11111 23567999988766 443222 2345555443
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.40 E-value=2.3e-11 Score=109.52 Aligned_cols=239 Identities=10% Similarity=-0.038 Sum_probs=133.4
Q ss_pred CCCCCCEEE-----EeecCCcEEEeecCCCcEEEEEec-CCCceeeeeecCCeEEEEEc-CCCc-------ccccceEee
Q 024407 2 FQANSMTLI-----TGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITT-DPFM-------ELNSAIHVK 67 (268)
Q Consensus 2 fs~d~~~l~-----s~s~D~tv~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~ 67 (268)
|||||++|| +|+.+.+|++||+++++.+..... ......+.|+|+++.++.+. +... .....+..+
T Consensus 128 ~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~ 207 (695)
T 2bkl_A 128 VSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH 207 (695)
T ss_dssp ECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred ECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence 899999999 677778999999999876411111 11126788999876555443 2210 011123333
Q ss_pred eeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCCceeeecccccCcccceEEEEEcC
Q 024407 68 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA----IVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143 (268)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 143 (268)
++... ......+....++...+..+.|+|||++|+.++.++ .|.+||..+++... +. .+...+....+ +
T Consensus 208 ~l~t~--~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~---~~~~~~~~~~~-~ 280 (695)
T 2bkl_A 208 TLGTE--PSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LV---KGVGAKYEVHA-W 280 (695)
T ss_dssp ETTSC--GGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EE---ECSSCCEEEEE-E
T ss_pred ECCCC--chhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-ee---cCCCceEEEEe-c
Confidence 32211 001123333334556788999999999988777666 67777765554322 21 13334444444 5
Q ss_pred CCCEEEEee---CCCcEEEEECCCcce--eeeee-c--CCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCeeeeEe
Q 024407 144 DGSHFLTGS---LDKSAKLWDARTLEL--IKTYV-T--ERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKF 214 (268)
Q Consensus 144 ~~~~l~s~~---~d~~i~iwd~~~~~~--~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~ 214 (268)
++..++... .++.|.+||+.+++. ...+. . ...+..+.++ ++.++++...++ ..++..+.. +.
T Consensus 281 ~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~-g~----- 352 (695)
T 2bkl_A 281 KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLK-GK----- 352 (695)
T ss_dssp TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-CC-----
T ss_pred CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCC-CC-----
Confidence 666444443 257899999987642 12222 2 2235556665 345555444333 223333321 11
Q ss_pred eehhhhhhhcccccc-ccceEEEEECCCCCeEE----eeeCCCeEEEEeeCCC
Q 024407 215 FDKILQEEIGGVKGH-FGPINALAFNPDGKSFS----SGGEDGYVRLHHFDPD 262 (268)
Q Consensus 215 ~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~la----sgs~Dg~i~i~~~~~~ 262 (268)
....+..+ ...|..++++|+++.++ +...+++|.+|+++..
T Consensus 353 -------~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 353 -------PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp -------EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred -------eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 11112222 45677888999998776 4444578888887653
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.37 E-value=1.3e-09 Score=89.09 Aligned_cols=241 Identities=9% Similarity=0.005 Sum_probs=146.9
Q ss_pred CCCCCCCEEEEeecCCcEEEeecCCCcEEEEEe-cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 1 MFQANSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.|++++..+++.+.+++++.| .++....+. ....+..+.|.+.+.+.++.... ..+..++ ..+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-----~~i~~~d------~~~~~ 77 (333)
T 2dg1_A 12 FYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFE-----GNIFKIN------PETKE 77 (333)
T ss_dssp CSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTT-----CEEEEEC------TTTCC
T ss_pred eecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCC-----CEEEEEe------CCCCc
Confidence 378888888888999999999 344444443 23445777888777765544321 1222221 12233
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC--
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGED----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-- 153 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-- 153 (268)
.......+...+.++.++|+|+.+++...+ +.|.+||..+++....+.. ..+...+..+++++++..+++...
T Consensus 78 ~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-CccCCcccceEECCCCCEEEEecccc
Confidence 333333566789999999999988877666 6899999988764322211 123457889999999987777654
Q ss_pred ----CCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCC-CeeeeEeeehhhhhhhccccc
Q 024407 154 ----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA-GKFEAKFFDKILQEEIGGVKG 228 (268)
Q Consensus 154 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~ 228 (268)
.+.|..+|..+++.............+.++|++..++++...+ ..+..++... +.....+ .. .......+
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~-~~i~~~d~~~~g~~~~~~-~~---~~~~~~~~ 231 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA-NRLHRIALEDDGVTIQPF-GA---TIPYYFTG 231 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG-TEEEEEEECTTSSSEEEE-EE---EEEEECCS
T ss_pred ccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCC-CeEEEEEecCCCcCcccc-cc---eEEEecCC
Confidence 3567777766544432222223467889999877665554322 2455555432 2111100 00 00001112
Q ss_pred cccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 229 HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+ ..+..++++++|+++++...++.|.+|+.+++
T Consensus 232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp S-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSC
T ss_pred C-CCCCceEECCCCCEEEEEcCCCEEEEECCCCC
Confidence 2 35678999999999888888899999876544
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.35 E-value=5.6e-10 Score=91.62 Aligned_cols=221 Identities=11% Similarity=0.090 Sum_probs=124.9
Q ss_pred CCCCCCEEEEeecCC-----cEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEc-CCCc------------ccc--
Q 024407 2 FQANSMTLITGSADQ-----TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITT-DPFM------------ELN-- 61 (268)
Q Consensus 2 fs~d~~~l~s~s~D~-----tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~-- 61 (268)
|||||+.|+.++.++ .|.+||+.+++......... +..+.|+|++..++... +... ..+
T Consensus 66 ~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 144 (347)
T 2gop_A 66 ISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDL 144 (347)
T ss_dssp ECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC----
T ss_pred ECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence 899999999888653 37778888877655555445 88899998776444432 2000 000
Q ss_pred -----cceEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCceeeecccc
Q 024407 62 -----SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA-------IVRIWDTETGKLLKESDKE 129 (268)
Q Consensus 62 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~ 129 (268)
....++.+ ...+++.+..+.. . .+..+.|+|+| .++++..++ ...+|.+.+++. ..+.
T Consensus 145 ~~~~~~~~~l~~~----d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~-- 214 (347)
T 2gop_A 145 GFFDGEKTTFWIF----DTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMF-- 214 (347)
T ss_dssp -----CEEEEEEE----ETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEE--
T ss_pred ccccCccceEEEE----ECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEec--
Confidence 01111111 1123443234444 3 78889999999 777776542 344444434432 2222
Q ss_pred cCcccceEEEEEcCCCCEEEEeeCC--------CcEEEEECCCcceeeeeec-CCceeE-EEEccCCCeEEEeecCCC-c
Q 024407 130 TGHKKTITSLAKAADGSHFLTGSLD--------KSAKLWDARTLELIKTYVT-ERPVNA-VTMSPLLDHVVLGGGQDA-S 198 (268)
Q Consensus 130 ~~h~~~v~~v~~s~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~-~ 198 (268)
.+ ..+..+ +|+|..|+.++.+ ..|.+|| +++....... ...+.. +.|+ ++ +++.+..++ .
T Consensus 215 -~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~ 285 (347)
T 2gop_A 215 -EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSV 285 (347)
T ss_dssp -EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEE
T ss_pred -cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCCcE
Confidence 12 344443 8999998877754 3688888 4443322222 334554 7787 54 444333332 2
Q ss_pred eEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeE-EEEeeC
Q 024407 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV-RLHHFD 260 (268)
Q Consensus 199 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i-~i~~~~ 260 (268)
.++ .+ .+... .+..+...|.+++|+| ..+++++.++.. +||.++
T Consensus 286 ~l~-~~--~g~~~-------------~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IW--DGEIK-------------PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEE-EE--SSSEE-------------EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEE-Ec--CCceE-------------EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 233 33 22211 1122345789999999 677777777765 888886
No 184
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.35 E-value=1.7e-09 Score=89.76 Aligned_cols=218 Identities=11% Similarity=0.055 Sum_probs=128.2
Q ss_pred CCCCCCCEEEEee----------cCCcEEEeecCCCcEEEEEecC-------CCceeeeeecCCeEEEEEcCCCcccccc
Q 024407 1 MFQANSMTLITGS----------ADQTAKLWNVETGAQLFTFNFD-------SPARSVDFAVGDKLAVITTDPFMELNSA 63 (268)
Q Consensus 1 ~fs~d~~~l~s~s----------~D~tv~~wd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (268)
.||||+++|++++ .|++|.+||+.+++.+..+... ..+..+.++|+++.+.+++... ...
T Consensus 56 ~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~---~~~ 132 (361)
T 2oiz_A 56 QVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP---ATS 132 (361)
T ss_dssp EECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS---SEE
T ss_pred EECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC---CCe
Confidence 3899999999987 3788999999999888877642 3467888999887777664210 112
Q ss_pred eEeeeeeeCCCCCCCceEEE-Ee-------------------------------cCCCCeEE----------------EE
Q 024407 64 IHVKRIARDPADQGGESVLI-LK-------------------------------GPQGRINR----------------AV 95 (268)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~-~~-------------------------------~~~~~v~~----------------~~ 95 (268)
+.+++.. +.+.+.. +. ...+.+.. +.
T Consensus 133 v~v~d~~------~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (361)
T 2oiz_A 133 IGIVDVA------KGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIA 206 (361)
T ss_dssp EEEEETT------TTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSC
T ss_pred EEEEECC------CCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEE
Confidence 2222211 1111111 10 00011110 01
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcee--eeccccc------C-cccceEEEEEcCCCCEEEEeeC-----------CC
Q 024407 96 WGPLNRTIISAGEDAIVRIWDTETGKLL--KESDKET------G-HKKTITSLAKAADGSHFLTGSL-----------DK 155 (268)
Q Consensus 96 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~------~-h~~~v~~v~~s~~~~~l~s~~~-----------d~ 155 (268)
++|++..++..+.++.|.++|+..++.. ....... + .+.....+++++++..+.++.. ++
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 1233444444555666666666543211 1000000 0 0111112678999888776543 35
Q ss_pred cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCC--eeeeEeeehhhhhhhccccccccce
Q 024407 156 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG--KFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 156 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
+|.+||+++++.+.++.... +..+.++|++..++++.. ..+..+|..++ .....+ ..+-..-
T Consensus 287 ~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~---~~v~v~D~~t~~l~~~~~i------------~~~G~~P 350 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG---GNVNVYDISQPEPKLLRTI------------EGAAEAS 350 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS---SCEEEEECSSSSCEEEEEE------------TTSCSSE
T ss_pred eEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC---CeEEEEECCCCcceeeEEe------------ccCCCCc
Confidence 89999999999999887777 999999999887666543 56777787776 433221 1122345
Q ss_pred EEEEECCCCC
Q 024407 234 NALAFNPDGK 243 (268)
Q Consensus 234 ~~~~~sp~~~ 243 (268)
..++++|+|+
T Consensus 351 ~~~~~~p~G~ 360 (361)
T 2oiz_A 351 LQVQFHPVGG 360 (361)
T ss_dssp EEEEECCCSC
T ss_pred EEEEecCCCC
Confidence 6789999986
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.35 E-value=3.5e-10 Score=102.09 Aligned_cols=241 Identities=7% Similarity=-0.073 Sum_probs=138.4
Q ss_pred CCCCCEEEEeecCCc---EEEee--cCCCcEEEEEecC-------CCceeeeeecCCeEEEEEcCCCcccccceEeeeee
Q 024407 3 QANSMTLITGSADQT---AKLWN--VETGAQLFTFNFD-------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA 70 (268)
Q Consensus 3 s~d~~~l~s~s~D~t---v~~wd--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (268)
+|||+.++-...++. -.+|- ...++....+..+ ..+..+.|+|+++.++.+.+....-...+.++++
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~- 158 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV- 158 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET-
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC-
Confidence 367777665544321 13443 3334333222211 1356778898776655443211111123344433
Q ss_pred eCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCceee-ecccccCcc
Q 024407 71 RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI----------------VRIWDTETGKLLK-ESDKETGHK 133 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~-~~~~~~~h~ 133 (268)
.+++.......+ ..+..+.|+|||+.|+.++.++. |++|++.+++... .+.....|.
T Consensus 159 -----~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~ 232 (710)
T 2xdw_A 159 -----DGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP 232 (710)
T ss_dssp -----TTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred -----CCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC
Confidence 233443322222 22667999999999998888776 9999998875321 111122355
Q ss_pred cceEEEEEcCCCCEEEEeeC-----CCcEEEEECCC------cc-eeeeeecCCceeEEEEccCCCeEEEeecCCC--ce
Q 024407 134 KTITSLAKAADGSHFLTGSL-----DKSAKLWDART------LE-LIKTYVTERPVNAVTMSPLLDHVVLGGGQDA--SA 199 (268)
Q Consensus 134 ~~v~~v~~s~~~~~l~s~~~-----d~~i~iwd~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 199 (268)
..+..+.++|||.+|+..+. +..|.+||+.+ ++ ....+..........++|+++.+++.+..+. ..
T Consensus 233 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~ 312 (710)
T 2xdw_A 233 KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYR 312 (710)
T ss_dssp TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCE
T ss_pred eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCE
Confidence 66888999999999887664 57899999976 42 2333332222223357777777776654432 34
Q ss_pred EEEeccCCCeeeeEeeehhhhhhhcccccccc--ceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 200 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG--PINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 200 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+..+|...+.. ..+..+..|.. .+..++|++++..+++...|+..+||.++
T Consensus 313 l~~~d~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~ 365 (710)
T 2xdw_A 313 LINIDFTDPEE----------SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD 365 (710)
T ss_dssp EEEEETTSCCG----------GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCc----------ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEE
Confidence 55555443210 01122223333 57789999888889999999987776554
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.34 E-value=1.7e-09 Score=94.89 Aligned_cols=190 Identities=12% Similarity=0.043 Sum_probs=125.5
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
|.+.++++...|++|.++|..+++.+..+...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g------------------------------------------------ 196 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG------------------------------------------------ 196 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS------------------------------------------------
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC------------------------------------------------
Confidence 34556778888899999998888766544311
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeeecccccCcccceEEEEEc----CCCCEEEEee-CCCc
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE--TGKLLKESDKETGHKKTITSLAKA----ADGSHFLTGS-LDKS 156 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~v~~s----~~~~~l~s~~-~d~~ 156 (268)
..+..+.|+|+|+++++++.|+.|.+||+. +++.+..+.. ......++++ |||.++++++ .+++
T Consensus 197 -----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~ 267 (567)
T 1qks_A 197 -----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----GSEARSIETSKMEGWEDKYAIAGAYWPPQ 267 (567)
T ss_dssp -----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred -----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----CCCCceeEEccccCCCCCEEEEEEccCCe
Confidence 123467899999999999999999999996 7776665542 1235688999 6999887665 5689
Q ss_pred EEEEECCCcceeeeeecC------------CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhc
Q 024407 157 AKLWDARTLELIKTYVTE------------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG 224 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 224 (268)
|.++|..+.+.++.+... ..+..+..++.+...++.. .+...+...|........ . .
T Consensus 268 v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-~~~g~v~~vd~~~~~~~~-v---------~ 336 (567)
T 1qks_A 268 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-KETGKILLVDYTDLNNLK-T---------T 336 (567)
T ss_dssp EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-TTTTEEEEEETTCSSEEE-E---------E
T ss_pred EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-cCCCeEEEEecCCCccce-e---------e
Confidence 999999998887765421 1345566666655544443 333444444433221100 0 0
Q ss_pred cccccccceEEEEECCCCCeEEeee-CCCeEEEEeeCCC
Q 024407 225 GVKGHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFDPD 262 (268)
Q Consensus 225 ~~~~h~~~v~~~~~sp~~~~lasgs-~Dg~i~i~~~~~~ 262 (268)
.+. .......+.|+|+|++|+++. .++.|.+++....
T Consensus 337 ~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 337 EIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred eee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 000 112355789999999976555 5788999887743
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.33 E-value=2.7e-09 Score=93.58 Aligned_cols=255 Identities=16% Similarity=0.159 Sum_probs=145.9
Q ss_pred CCCCCCCEEEEeecCCcEEEeecC--CCcEEEEEecCCCceeeeee----cCCeEEEEEcC--CCcccccc--e-Eeeee
Q 024407 1 MFQANSMTLITGSADQTAKLWNVE--TGAQLFTFNFDSPARSVDFA----VGDKLAVITTD--PFMELNSA--I-HVKRI 69 (268)
Q Consensus 1 ~fs~d~~~l~s~s~D~tv~~wd~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~--~-~~~~~ 69 (268)
.||||+++|++++.|++|.+||+. +++.+..+........+.++ |+++.+.+++. +...+... . .+..+
T Consensus 203 ~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i 282 (567)
T 1qks_A 203 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 282 (567)
T ss_dssp EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 389999999999999999999995 88888888766667888898 46665555431 11111000 0 00001
Q ss_pred eeCC----------C-------------------CCCCceEEEEe------------cCCCCeEEEEEcCCCCEEEEEe-
Q 024407 70 ARDP----------A-------------------DQGGESVLILK------------GPQGRINRAVWGPLNRTIISAG- 107 (268)
Q Consensus 70 ~~~~----------~-------------------~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~s~~- 107 (268)
.... + .+++ .+..+. +......++.|+|++++++++.
T Consensus 283 ~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g-~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~ 361 (567)
T 1qks_A 283 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG-KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN 361 (567)
T ss_dssp ECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT-EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred eccccccccccccCCCceEEEEEcCCCCEEEEEecCCC-eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC
Confidence 0000 0 0000 111110 1122345678999999886654
Q ss_pred CCCcEEEEECCCCceeeeccc--ccCcccceEEEEEcCCCCEE-EEee-CCCcEEEEECCC-------cceeeeeecCC-
Q 024407 108 EDAIVRIWDTETGKLLKESDK--ETGHKKTITSLAKAADGSHF-LTGS-LDKSAKLWDART-------LELIKTYVTER- 175 (268)
Q Consensus 108 ~dg~i~iwd~~~~~~~~~~~~--~~~h~~~v~~v~~s~~~~~l-~s~~-~d~~i~iwd~~~-------~~~~~~~~~~~- 175 (268)
.++.|.++|+.+++....+.. ...|...-..+ ++|++..+ ++.. .+++|.++|... .+.++++....
T Consensus 362 ~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~ 440 (567)
T 1qks_A 362 ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG 440 (567)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred CCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC
Confidence 789999999999987665532 12354322222 56774444 4443 568999999987 56667665432
Q ss_pred ceeEEEEccCCCeEEEeec--CC---CceEEEeccCCC-----eeeeEeeehhhhhhhccccccccceEEEEECCCCCeE
Q 024407 176 PVNAVTMSPLLDHVVLGGG--QD---ASAVTTTDHRAG-----KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF 245 (268)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~--~~---~~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 245 (268)
....+..+|++.++.+... .+ ...+...|.... ......... . ++..+..-...+..+.|+|+|+++
T Consensus 441 g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~G~~~ 517 (567)
T 1qks_A 441 GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI--A-EWAGITEGQPRVVQGEFNKDGTEV 517 (567)
T ss_dssp CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECH--H-HHHTCCSSCCEEEEEEECTTSSEE
T ss_pred CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecc--c-cccccCCCCcceEeeeECCCCCEE
Confidence 2345678898888777552 11 224555554433 100011110 0 011111112358899999999885
Q ss_pred Eee--e---CCCeEEEEeeC
Q 024407 246 SSG--G---EDGYVRLHHFD 260 (268)
Q Consensus 246 asg--s---~Dg~i~i~~~~ 260 (268)
... + .++.|.|++..
T Consensus 518 ~~s~~~~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 518 WFSVWNGKDQESALVVVDDK 537 (567)
T ss_dssp EEEEECCTTSCCEEEEEETT
T ss_pred EEEeecCCCCCCcEEEEECC
Confidence 543 2 36888886543
No 188
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.32 E-value=6.5e-10 Score=100.87 Aligned_cols=237 Identities=15% Similarity=0.064 Sum_probs=131.5
Q ss_pred CCCCCCEEEEeecC-----CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEc-CCCcc--------cccceEee
Q 024407 2 FQANSMTLITGSAD-----QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITT-DPFME--------LNSAIHVK 67 (268)
Q Consensus 2 fs~d~~~l~s~s~D-----~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~ 67 (268)
|||||+.|+.++.+ .+|++||+++++.+...........+.|+|+ +.++.+. +.... ....+..+
T Consensus 170 ~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~ 248 (741)
T 1yr2_A 170 ASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLH 248 (741)
T ss_dssp ECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEE
T ss_pred ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEE
Confidence 89999999887765 5799999999987543222222357788988 5444433 22100 01112222
Q ss_pred eeeeCCCCCCCceEEEEec--CCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC--ceeeecccccCcccceEE
Q 024407 68 RIARDPADQGGESVLILKG--PQGRINRAVWGPLNRTIISAGEDA-----IVRIWDTETG--KLLKESDKETGHKKTITS 138 (268)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~~~~~~~~h~~~v~~ 138 (268)
++.. ........+.+ +...+..+.|+|||++|+..+.++ .|++||+.++ +....+. .+...+..
T Consensus 249 ~lgt----~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~ 321 (741)
T 1yr2_A 249 RLGT----PQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQWD 321 (741)
T ss_dssp ETTS----CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCEE
T ss_pred ECCC----CchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceEE
Confidence 2211 01111233333 334588999999999888776543 8999999876 3122222 22233333
Q ss_pred EEEcCCCCEEEEeeCC----CcEEEEECCCcc-eeeeee-c-CCceeEEEEccCCCeEEEeecCCC-ceEEEeccCCCee
Q 024407 139 LAKAADGSHFLTGSLD----KSAKLWDARTLE-LIKTYV-T-ERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKF 210 (268)
Q Consensus 139 v~~s~~~~~l~s~~~d----~~i~iwd~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~ 210 (268)
. +++++..|+..+.+ +.|.+||+.++. ....+. . ...+..+.+. ++.+++....++ ..++..+...+
T Consensus 322 ~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~-- 396 (741)
T 1yr2_A 322 F-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGK-- 396 (741)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSC--
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCC--
Confidence 3 34888888877653 459999998742 222222 2 2233444554 345555443332 22333332111
Q ss_pred eeEeeehhhhhhhccccc-cccceEEEEECCCCCeEE----eeeCCCeEEEEeeCCC
Q 024407 211 EAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFS----SGGEDGYVRLHHFDPD 262 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~la----sgs~Dg~i~i~~~~~~ 262 (268)
....+.. +...|..++++|+++.|+ +....++|.+|++...
T Consensus 397 -----------~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 397 -----------PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp -----------EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred -----------ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 1111221 245688899999988666 3344577888877653
No 189
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.31 E-value=2.3e-09 Score=86.54 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=134.6
Q ss_pred CCCCCCEEEE-------eecCCcEEEeecCCCcEEEEEe-----cCCCceeeeeecC-CeEEEEEcCCCcccccceEeee
Q 024407 2 FQANSMTLIT-------GSADQTAKLWNVETGAQLFTFN-----FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKR 68 (268)
Q Consensus 2 fs~d~~~l~s-------~s~D~tv~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 68 (268)
|++++.++++ +..++.|.+||+.+++...... ....+..+.+.+. +.+.++.... .+..++
T Consensus 25 ~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~------~l~~~d 98 (314)
T 1pjx_A 25 FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL------GLLVVQ 98 (314)
T ss_dssp ECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT------EEEEEE
T ss_pred ECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC------CEEEEe
Confidence 6789988888 7888999999988877543222 2245677777776 6665554321 111111
Q ss_pred eeeCCCCCCCceEEE-Ee---c-CCCCeEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCceeeeccc
Q 024407 69 IARDPADQGGESVLI-LK---G-PQGRINRAVWGPLNRTIISAGED---------------AIVRIWDTETGKLLKESDK 128 (268)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~---~-~~~~v~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~ 128 (268)
. . ++.... .. + ....+.++.++|+|+..++...+ +.|..||.. ++.....
T Consensus 99 ~------~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-- 168 (314)
T 1pjx_A 99 T------D-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-- 168 (314)
T ss_dssp T------T-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE--
T ss_pred C------C-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec--
Confidence 1 1 111111 11 1 12357899999999887776655 567777765 4432211
Q ss_pred ccCcccceEEEEEc----CCCCEEE-EeeCCCcEEEEECC-Ccc-----eeeeeecC--CceeEEEEccCCCeEEEeecC
Q 024407 129 ETGHKKTITSLAKA----ADGSHFL-TGSLDKSAKLWDAR-TLE-----LIKTYVTE--RPVNAVTMSPLLDHVVLGGGQ 195 (268)
Q Consensus 129 ~~~h~~~v~~v~~s----~~~~~l~-s~~~d~~i~iwd~~-~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 195 (268)
.+......++++ +++..++ +...++.|.+||++ .++ ....+... ..+..+.+++.+. ++++...
T Consensus 169 --~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~ 245 (314)
T 1pjx_A 169 --TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWG 245 (314)
T ss_dssp --EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEET
T ss_pred --cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcC
Confidence 123345788899 9987655 44568899999976 332 11112111 3466788888764 4444322
Q ss_pred CCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC-eEEeeeCCCeEEEEeeCC
Q 024407 196 DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 196 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~lasgs~Dg~i~i~~~~~ 261 (268)
+ ..+..+|...+.... .+..+...+.+++|+|+++ .+++...++.|..++.+.
T Consensus 246 ~-~~i~~~d~~~g~~~~------------~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 S-SHIEVFGPDGGQPKM------------RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp T-TEEEEECTTCBSCSE------------EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred C-CEEEEEcCCCCcEeE------------EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 2 234555554332211 1122335688999999999 455656678888887654
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.27 E-value=1.3e-09 Score=98.24 Aligned_cols=238 Identities=11% Similarity=-0.006 Sum_probs=139.0
Q ss_pred CCCCCCEEEEeecCC---cEEEeec--CCCcEEEEEecC-------CCceeeeeecCCeEEEEEcCCCcccccceEeeee
Q 024407 2 FQANSMTLITGSADQ---TAKLWNV--ETGAQLFTFNFD-------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI 69 (268)
Q Consensus 2 fs~d~~~l~s~s~D~---tv~~wd~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (268)
.+|||+.++-...++ .-.+|-. ..+.....+..+ ..+..+.|+|+++.++.+.+....-+..+.++++
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 457888888777665 3455643 344433333322 1467888999877666543322222234455544
Q ss_pred eeCCCCCCCceEEEEecCCCCe--EEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCcee-eecccccCcc
Q 024407 70 ARDPADQGGESVLILKGPQGRI--NRAVWGPLNRTIISAGEDAI-------------VRIWDTETGKLL-KESDKETGHK 133 (268)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~-~~~~~~~~h~ 133 (268)
.. ++.+. ..+-..+ ..+.|+|||+.|+.++.|.. |++|++.+++.. ..+.....|.
T Consensus 155 ~t------g~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~ 226 (695)
T 2bkl_A 155 DS------GEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP 226 (695)
T ss_dssp TT------CCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred CC------CCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence 32 22110 1122222 57899999999999988876 999999887632 1111223456
Q ss_pred cceEEEEEcCCCCEEEEeeCCC----cEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCC--CceEEEeccCC
Q 024407 134 KTITSLAKAADGSHFLTGSLDK----SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD--ASAVTTTDHRA 207 (268)
Q Consensus 134 ~~v~~v~~s~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~ 207 (268)
..+..+.++|||.+|+.++.++ .|.++|..+++...............+ +.+. +++.+..+ ...+..+|...
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~ 304 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAK 304 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTB
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCC
Confidence 6788999999999998877666 677777655543322222223333334 4455 55544322 34455555443
Q ss_pred CeeeeEeeehhhhhhhcccccc--ccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 208 GKFEAKFFDKILQEEIGGVKGH--FGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
+.. ..+..+..| ...+..++|+ ++..+++...|+..+||.++
T Consensus 305 ~~~----------~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 305 PAR----------ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CSG----------GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CCc----------cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 221 001112222 3357788888 67889999999999998776
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.25 E-value=5.8e-09 Score=85.34 Aligned_cols=220 Identities=10% Similarity=0.021 Sum_probs=132.9
Q ss_pred CCcEEEeecCCCcEEEEEe-------cCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecC
Q 024407 15 DQTAKLWNVETGAQLFTFN-------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 87 (268)
Q Consensus 15 D~tv~~wd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (268)
+++|.++|.++++....+. ....+..+.+. ++++.++... ...+.+.+. .+++.+..+..
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~-----~~~v~viD~------~t~~~~~~i~~- 82 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNN-----SHVIFAIDI------NTFKEVGRITG- 82 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGG-----GTEEEEEET------TTCCEEEEEEC-
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcC-----CCEEEEEEC------cccEEEEEcCC-
Confidence 8999999999987654331 11123344442 4444444331 122333222 34556666643
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccccc--CcccceEEEEEcCCCCEEEEee--CCCcEEEEECC
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSHFLTGS--LDKSAKLWDAR 163 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~~~~~l~s~~--~d~~i~iwd~~ 163 (268)
......+.++|+++.+++...++.|.+||+.+++....+.... ++......+++ . +..+..+. .+++|.++|++
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETT
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECC
Confidence 3567889999998554555489999999999988765543211 11123445666 3 44454444 48999999999
Q ss_pred CcceeeeeecCCceeEEEEccCCCeEEEeecCC--------CceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 164 TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD--------ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
+++.+..+........+.++|++...+.+.+.. ...+...|...+.+...+ . +. .......
T Consensus 161 t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~-~---------~~-~g~~p~~ 229 (328)
T 3dsm_A 161 TDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF-K---------FK-LGDWPSE 229 (328)
T ss_dssp TTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE-E---------CC-TTCCCEE
T ss_pred CCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE-e---------cC-CCCCcee
Confidence 998888776666667888888765444433320 245667776665543221 1 00 0124688
Q ss_pred EEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 236 LAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 236 ~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
++|+|+++.+..+.. .|.+++....
T Consensus 230 la~~~d~~~lyv~~~--~v~~~d~~t~ 254 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN--DIWRMPVEAD 254 (328)
T ss_dssp EEECTTSCEEEEESS--SEEEEETTCS
T ss_pred EEEecCCCEEEEEcc--EEEEEECCCC
Confidence 999999988776554 6766666543
No 192
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.24 E-value=8.7e-08 Score=76.46 Aligned_cols=229 Identities=9% Similarity=0.056 Sum_probs=141.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEec---CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
++++++++++...++.|.+||.. ++. ..+.. ...+..+.+.+.+.+.++.... ..+. .+.. ...
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~--~~~~----~g~ 88 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDGEVWFTENAA-----NKIG--RITK----KGI 88 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEE--EECT----TSC
T ss_pred ECCCCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCCCEEEeCCCC-----CeEE--EECC----CCc
Confidence 57889888877778999999988 543 33332 3446677777666665554321 1111 1110 111
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEE
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 158 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 158 (268)
.....+......+..+.++|+++.+++...++.|..||. +++...... ......+..+++++++...++...++.|.
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL--PNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC--CCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 111122234557889999999988888778899999998 554432211 12345678999999998887777788999
Q ss_pred EEECCCcceeee-ee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 159 LWDARTLELIKT-YV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 159 iwd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
.||. +++.... .. ....+..+.+.+.+. ++++... ...+..++. .+.+.. +. ...+...+.++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~-~~~i~~~~~-~g~~~~--~~---------~~~~~~~~~~i 230 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEII-GNKIGRITT-SGEITE--FK---------IPTPNARPHAI 230 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETT-TTEEEEECT-TCCEEE--EE---------CSSTTCCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccC-CceEEEECC-CCcEEE--EE---------CCCCCCCceeE
Confidence 9998 5554332 11 123466788888754 4444322 234555565 443321 11 11233568899
Q ss_pred EECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 237 AFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+++++|+.+++...++.|.+|+.++
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~~g 255 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTSNN 255 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEETTT
T ss_pred EECCCCCEEEeccCCceEEEECCCC
Confidence 9999999887766778888887643
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.22 E-value=1.2e-07 Score=78.98 Aligned_cols=117 Identities=10% Similarity=-0.063 Sum_probs=76.1
Q ss_pred CCCCCCCEEEEeec--CC---cEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcc-----cccceEeeeee
Q 024407 1 MFQANSMTLITGSA--DQ---TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME-----LNSAIHVKRIA 70 (268)
Q Consensus 1 ~fs~d~~~l~s~s~--D~---tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 70 (268)
+..|+++.++.+.. .. +|.++|+.+++.+..+...... .+.++|+++.+.+++..... ....+.+.+..
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 35678888888764 33 8999999999988777755445 89999988877776521100 11222232221
Q ss_pred eCCCCCCCceEEEEecC-------CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeee
Q 024407 71 RDPADQGGESVLILKGP-------QGRINRAVWGPLNRTIISAGE--DAIVRIWDTETGKLLKE 125 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~ 125 (268)
+.+.+..+.-. ......+.|+|||++|+.+.. ++.|.++| .+++.+..
T Consensus 106 ------t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 106 ------TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred ------CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 22333333211 123457899999999988764 58899999 99887766
No 194
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.21 E-value=6.6e-08 Score=81.55 Aligned_cols=245 Identities=9% Similarity=-0.016 Sum_probs=142.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+++++++++...++.|++||++++............. +.+.+....+.++.... ...++.+.... +...
T Consensus 138 ~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~-----~~~I~~~d~~~----~~~~ 207 (409)
T 3hrp_A 138 AVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEG-----THTVYVYMKAS----GWAP 207 (409)
T ss_dssp ECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSST-----TCEEEEEEGGG----TTCE
T ss_pred EeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCC-----CceEEEEEcCC----Ccee
Confidence 67899988888888999999998876655544433344 77888766555443211 00222222111 1111
Q ss_pred EEE---ec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecc-cccCcccce--EEEEEcCC-CCEEEEeeC
Q 024407 82 LIL---KG-PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTI--TSLAKAAD-GSHFLTGSL 153 (268)
Q Consensus 82 ~~~---~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v--~~v~~s~~-~~~l~s~~~ 153 (268)
..+ .. ....+.+++++|++..|+.+..++.|+.||..++....... ...++.... ..++++|+ +..+++-..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 122 12 34567889999966666667778999999998765322100 011122222 38999995 666667778
Q ss_pred CCcEEEEECCCcceeeeee-c---------------CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeeh
Q 024407 154 DKSAKLWDARTLELIKTYV-T---------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 217 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 217 (268)
+++|..||.... . ..+. . -.....++++|++. ++++-......|..++...+.+....-..
T Consensus 288 ~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~ 364 (409)
T 3hrp_A 288 LSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQV 364 (409)
T ss_dssp TTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCC
Confidence 889999997643 1 2211 1 12367889999865 44443314455666665555443221110
Q ss_pred hh-hhhh-ccccccccceEEEEECCCCCeEEeeeCCCeEEEEee
Q 024407 218 IL-QEEI-GGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 218 ~~-~~~~-~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~ 259 (268)
.. ...- ............++++|+|..+++-..++.|+.+.+
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 00 0000 000111245788999999988888888889987765
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.19 E-value=7.6e-09 Score=82.58 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=108.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC--CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
++|+|++|+ +.++.|+.||. +++.++.+... ..+..+.+.+++.++++.+... ..+..+. ..++
T Consensus 44 ~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~------~~v~~vd-----~~Gk 109 (276)
T 3no2_A 44 ATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHP------STILEVN-----MKGE 109 (276)
T ss_dssp ECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTT------EEEEEEC-----TTSC
T ss_pred ECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCC------CEEEEEe-----CCCC
Confidence 578999988 45789999999 89999988864 3456677777777766644310 1111111 1334
Q ss_pred eEEEEe------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC
Q 024407 80 SVLILK------GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 153 (268)
Q Consensus 80 ~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~ 153 (268)
.+..+. ++......+.+.++|+++++...++.|..||.. ++.+..+.. .....++...++++.+++++.
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~----~~~~~~~~~~~~g~~~v~~~~ 184 (276)
T 3no2_A 110 VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL----SGTPFSSAFLDNGDCLVACGD 184 (276)
T ss_dssp EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC----SSCCCEEEECTTSCEEEECBT
T ss_pred EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC----CCCccceeEcCCCCEEEEeCC
Confidence 444433 122244556788999999999999999999998 888776653 134456777899999999999
Q ss_pred CCcEEEEECCCcceeeeee
Q 024407 154 DKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~ 172 (268)
+++|..+|+.+++.+.++.
T Consensus 185 ~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 185 AHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp TSEEEEECTTTCCEEEEEE
T ss_pred CCeEEEEeCcCCcEEEEec
Confidence 9999999999998877764
No 196
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.18 E-value=9.2e-09 Score=84.10 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=114.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCceeeecccccCcccceEEEEEcC
Q 024407 88 QGRINRAVWGPLNRTIISAGED------------------------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 143 (268)
-+.+..++++|+|+.+++...+ +.|.+||..+++...... .++-.....+++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG--KNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC--TTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC--CCccCCceEEEECC
Confidence 3568999999999999888777 479999999888765432 23445788999999
Q ss_pred CCCEEEEeeCCCcEEEEECCCcc-eeeeeec----------CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeee
Q 024407 144 DGSHFLTGSLDKSAKLWDARTLE-LIKTYVT----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 212 (268)
Q Consensus 144 ~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 212 (268)
+++++++...++.|+.||+.... .+..+.. -..+..++++|....++++.+.....+..++ ..+.+..
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 99988888899999999986542 3343321 1247789999944555555432334566666 3344332
Q ss_pred EeeehhhhhhhccccccccceEEEEECCC-CCeEEeeeCCCeEEEEeeC
Q 024407 213 KFFDKILQEEIGGVKGHFGPINALAFNPD-GKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~lasgs~Dg~i~i~~~~ 260 (268)
.+-.. ...-....++......++++|+ ++.+++...++.|++|+.+
T Consensus 180 ~~~~~--g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 180 QWGEE--SSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EECEE--CCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EeccC--CCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 22110 0000000123345789999998 7888888899999999987
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.17 E-value=1e-08 Score=82.30 Aligned_cols=161 Identities=14% Similarity=0.040 Sum_probs=109.4
Q ss_pred EEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
+..+..+.....++.|+|+++ .++++..++.|..||..++ ...+. .+...+.++++++++.++++...++.|.+
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~---~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM---HPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE---SSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE---CCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 344555666778999999998 6778888999999999876 33332 24567889999999998888777899999
Q ss_pred EECCCcceeeeeec-----CCceeEEEEccCCCeEEEee--cC-------------CCceEEEeccCCCeeeeEeeehhh
Q 024407 160 WDARTLELIKTYVT-----ERPVNAVTMSPLLDHVVLGG--GQ-------------DASAVTTTDHRAGKFEAKFFDKIL 219 (268)
Q Consensus 160 wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~i~~~d~~~~~~~~~~~~~~~ 219 (268)
||+++++....... ...+..+.++|.+...++.. +. ....++.++.. +...
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-------- 165 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-------- 165 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE--------
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE--------
Confidence 99987765332211 12345688888765333211 11 11234444433 2221
Q ss_pred hhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 220 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 220 ~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.+..+....+.++|+|+++.+++.+.++.|++|+++
T Consensus 166 -----~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 166 -----APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN 201 (296)
T ss_dssp -----EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred -----EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence 112234456889999999988888888999999986
No 198
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.11 E-value=2.2e-08 Score=90.20 Aligned_cols=237 Identities=16% Similarity=0.106 Sum_probs=128.1
Q ss_pred CCCCCCEEE-----EeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCe-EEEEEcCCC--c-----ccccceEeee
Q 024407 2 FQANSMTLI-----TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK-LAVITTDPF--M-----ELNSAIHVKR 68 (268)
Q Consensus 2 fs~d~~~l~-----s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~-----~~~~~~~~~~ 68 (268)
|||||++|| +|+.+.+|++||+++++.+.......+...+.|+ +++ ++....+.. . .....+..++
T Consensus 136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~ 214 (693)
T 3iuj_A 136 FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHR 214 (693)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEE
T ss_pred ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEE
Confidence 899999888 4555578999999999865432111223566788 554 444433321 0 0011122222
Q ss_pred eeeCCCCCCCceEEEEe--c-CCCCeEEEEEcCCCCEEEEE-e---CCCcEEEEECCCCc-eeeecccccCcccceEEEE
Q 024407 69 IARDPADQGGESVLILK--G-PQGRINRAVWGPLNRTIISA-G---EDAIVRIWDTETGK-LLKESDKETGHKKTITSLA 140 (268)
Q Consensus 69 ~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~s~-~---~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~ 140 (268)
+.. ...+...... + |...+..+.|+|||++|+.. + .++.|+++|+.++. ....+. .+.......
T Consensus 215 lgt----~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~---~~~~~~~~~- 286 (693)
T 3iuj_A 215 LGT----AQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ---GDLDADVSL- 286 (693)
T ss_dssp TTS----CGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE---CSSSSCEEE-
T ss_pred CCC----CcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe---CCCCceEEE-
Confidence 211 1112233333 3 44457889999999987533 2 23589999998763 122222 233333333
Q ss_pred EcCCCCEEEEee-CC---CcEEEEECCCcce--eeeee-cCCceeEEEEccCCCeEEEeecCCCc-eEEEeccCCCeeee
Q 024407 141 KAADGSHFLTGS-LD---KSAKLWDARTLEL--IKTYV-TERPVNAVTMSPLLDHVVLGGGQDAS-AVTTTDHRAGKFEA 212 (268)
Q Consensus 141 ~s~~~~~l~s~~-~d---~~i~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~ 212 (268)
+++++..|+..+ .+ +.|..+|+.+++. ...+. +..... .+++.++.+++....++. .+..++...+....
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~ 364 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVRE 364 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEE
Confidence 556666665443 33 5799999987643 12222 222222 788887777766544432 34555544222111
Q ss_pred EeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCC----CeEEEEeeCC
Q 024407 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED----GYVRLHHFDP 261 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~D----g~i~i~~~~~ 261 (268)
.. + .....+..+.++|+++.++....+ +++..+++..
T Consensus 365 l~-----------~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 365 VA-----------L-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EC-----------C-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred ee-----------c-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 00 0 122356677888888766544433 6676666644
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.10 E-value=2e-08 Score=91.17 Aligned_cols=237 Identities=9% Similarity=0.045 Sum_probs=135.2
Q ss_pred CCCCCCEEEEeecCCc---EEEeecC-----CCcEEEEEecC-------CCceeeeeecCCeEEEEEcCCCcccccceEe
Q 024407 2 FQANSMTLITGSADQT---AKLWNVE-----TGAQLFTFNFD-------SPARSVDFAVGDKLAVITTDPFMELNSAIHV 66 (268)
Q Consensus 2 fs~d~~~l~s~s~D~t---v~~wd~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (268)
++|||+.++-...++. -.+|-.. .+.....+..+ ..+..+.|+|+++.++.+.+....-...+.+
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 4588998887776654 5667543 33332222211 1456788998776655543211111123333
Q ss_pred eeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCceee-ecccccC
Q 024407 67 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI--------------VRIWDTETGKLLK-ESDKETG 131 (268)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~--------------i~iwd~~~~~~~~-~~~~~~~ 131 (268)
+++ .+++.+.. ..+...+..+.|+|| +.|+.++.|+. |++|++.+++... .+.....
T Consensus 194 ~dl------~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~ 265 (741)
T 1yr2_A 194 VGV------ADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE 265 (741)
T ss_dssp EET------TTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEC------CCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence 333 23333321 111112356889999 99988877654 8899998765211 1111223
Q ss_pred cccceEEEEEcCCCCEEEEeeCCC-----cEEEEECCCc--ceeeeeec-CCceeEEEEccCCCeEEEeecCC--CceEE
Q 024407 132 HKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTL--ELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQD--ASAVT 201 (268)
Q Consensus 132 h~~~v~~v~~s~~~~~l~s~~~d~-----~i~iwd~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 201 (268)
++..+..+.++|||.+|+..+.++ .|.+||+.++ ++...+.. ....... +.|+++.+++....+ ...+.
T Consensus 266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~ 344 (741)
T 1yr2_A 266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIV 344 (741)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence 444688999999999988776543 8999999876 31333332 2222222 347777777665433 23456
Q ss_pred EeccCCC--eeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 202 TTDHRAG--KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 202 ~~d~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.+|...+ .+. .+ +..+...+..++++ ++..+++...|+..+||.++
T Consensus 345 ~~d~~~~~~~~~-~l-----------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 345 RVDLSGSTPRFD-TV-----------VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEECSSSSCEEE-EE-----------ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred EEeCCCCccccE-EE-----------ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 6665442 111 11 11233446677877 56778899999999888775
No 200
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.10 E-value=4.4e-09 Score=87.52 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=113.4
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCc-----------EEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeee
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGA-----------QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA 70 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (268)
+++...+|++|+.| .+++|++++.+ ......... +..+.| .+..+++ +.+ +.+.++++.
T Consensus 45 is~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~~L~v-~~~------~~l~v~dv~ 114 (388)
T 1xip_A 45 ISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGDQVLV-STR------NALYSLDLE 114 (388)
T ss_dssp EETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETTEEEE-EES------SEEEEEESS
T ss_pred EcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCCEEEE-EcC------CcEEEEEch
Confidence 46788899999998 45579975433 223345556 888888 4444443 322 355555543
Q ss_pred eCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEE
Q 024407 71 RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT 150 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s 150 (268)
.. ........|..++.++.+.+. .++++..||.|.+||+.+++... +...|++++|+|+| ++.
T Consensus 115 sl------~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 115 EL------SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp ST------TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEE
T ss_pred hh------hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEE
Confidence 32 122345567778888776654 38889999999999999876532 45689999999999 788
Q ss_pred eeCCCcEEEEECCCcce--eeee------e----cCCceeEEEEccCCCeEEE
Q 024407 151 GSLDKSAKLWDARTLEL--IKTY------V----TERPVNAVTMSPLLDHVVL 191 (268)
Q Consensus 151 ~~~d~~i~iwd~~~~~~--~~~~------~----~~~~~~~~~~~~~~~~~~~ 191 (268)
+..||++++|++...++ ..++ . ++..+.++.|.+.+..+++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999999887764 3344 1 3567899999987665554
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.09 E-value=4.7e-09 Score=87.35 Aligned_cols=144 Identities=9% Similarity=0.030 Sum_probs=96.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCc
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~ 165 (268)
.+.+ |+.+.| ++++|+++ .++.|++||+++-....... .|+..+.++.+.+. .+++++.||.|.+||++++
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~---~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT---SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE---ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc---eeecceeeEEecCC--CEEEEECCCCEEEEEccCC
Confidence 3556 999999 88999888 88999999998754333222 35667877766543 3889999999999999977
Q ss_pred ceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeee-eEeeehhhhhhhccccccccceEEEEECCCCCe
Q 024407 166 ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE-AKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244 (268)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 244 (268)
.... ....+.+++|+|.+ .+++..++.. ..++...+... ...... +..+..-.+|...|.++.|.+++++
T Consensus 157 ~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i--~~~~~~~~~~~~k~~I~~--Pp~~~~~~~~~~~V~sI~wl~~~~f 227 (388)
T 1xip_A 157 STKQ---LAQNVTSFDVTNSQ--LAVLLKDRSF--QSFAWRNGEMEKQFEFSL--PSELEELPVEEYSPLSVTILSPQDF 227 (388)
T ss_dssp CEEE---EEESEEEEEECSSE--EEEEETTSCE--EEEEEETTEEEEEEEECC--CHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred cccc---ccCCceEEEEcCCc--eEEEEcCCcE--EEEcCCCccccccceecC--CcccccccCCCeeEEEEEEecCCeE
Confidence 6643 23468999999987 4555544433 33343333321 111211 1111111136678999999999998
Q ss_pred EEe
Q 024407 245 FSS 247 (268)
Q Consensus 245 las 247 (268)
+++
T Consensus 228 lv~ 230 (388)
T 1xip_A 228 LAV 230 (388)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.06 E-value=2.2e-06 Score=68.26 Aligned_cols=224 Identities=9% Similarity=0.073 Sum_probs=133.9
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEec---CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
+++++.++++...++.|..||.+ ++ ...+.. ...+..+.+.+.+.+.++.... ..+...+ . .+
T Consensus 64 ~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d------~-~g 129 (299)
T 2z2n_A 64 ISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNG-----NRIGRIT------D-DG 129 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEEC------T-TC
T ss_pred ECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCC-----ceEEEEC------C-CC
Confidence 56888888887778999999986 33 233332 2345667676666655543221 1111111 0 11
Q ss_pred ceE-EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 79 ESV-LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 79 ~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
+.. ..+..+...+..+.++|+|+..++...++.|..||. +++.... . .......+..+++++++...++...++.|
T Consensus 130 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 206 (299)
T 2z2n_A 130 KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF-K-IPTPASGPVGITKGNDDALWFVEIIGNKI 206 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-E-CSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-e-CCCCCCcceeEEECCCCCEEEEccCCceE
Confidence 111 122334456889999999988887777889999998 6654332 1 11234567889999999877777778899
Q ss_pred EEEECCCcceeeeeec---CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 158 KLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
..||. +++.. .+.. ...+..+.+.+.+. ++++.... ..+..+|. .+.+. .+. ...+...+.
T Consensus 207 ~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~-~~i~~~d~-~g~~~--~~~---------~~~~~~~~~ 270 (299)
T 2z2n_A 207 GRITT-SGEIT-EFKIPTPNARPHAITAGAGID-LWFTEWGA-NKIGRLTS-NNIIE--EYP---------IQIKSAEPH 270 (299)
T ss_dssp EEECT-TCCEE-EEECSSTTCCEEEEEECSTTC-EEEEETTT-TEEEEEET-TTEEE--EEE---------CSSSSCCEE
T ss_pred EEECC-CCcEE-EEECCCCCCCceeEEECCCCC-EEEeccCC-ceEEEECC-CCceE--EEe---------CCCCCCccc
Confidence 99999 65532 2322 24567888888754 55543222 33445554 23321 111 112335688
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
++++ ++++.+++.+.+ .+..++.+
T Consensus 271 ~i~~-~~g~l~v~~~~~-~l~~~~~~ 294 (299)
T 2z2n_A 271 GICF-DGETIWFAMECD-KIGKLTLI 294 (299)
T ss_dssp EEEE-CSSCEEEEETTT-EEEEEEEC
T ss_pred eEEe-cCCCEEEEecCC-cEEEEEcC
Confidence 9999 999888876644 44444444
No 203
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.06 E-value=5.4e-08 Score=77.57 Aligned_cols=162 Identities=14% Similarity=0.214 Sum_probs=109.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccc---ccCcccceEEEEE-cCCCCEEEEeeC-CCcEEEE
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK---ETGHKKTITSLAK-AADGSHFLTGSL-DKSAKLW 160 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~h~~~v~~v~~-s~~~~~l~s~~~-d~~i~iw 160 (268)
++-..+.+++++|+++.+++.+.++.|++||.. ++....+.. ..++...+..+++ .+++..+++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 445678899999999988888899999999987 554443321 1234567889999 467766666543 8999999
Q ss_pred ECCCcceeeeeecC--CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 161 DARTLELIKTYVTE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 161 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
| .+++.+..+... ..+..++++|.+. ++++... ...+..+|.. +.....+ .. .++...+..+++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~-~~~i~~~~~~-g~~~~~~-~~---------~~~~~~p~~i~~ 171 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECK-VMRVIIFDQN-GNVLHKF-GC---------SKHLEFPNGVVV 171 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETT-TTEEEEECTT-SCEEEEE-EC---------TTTCSSEEEEEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECC-CCEEEEEcCC-CCEEEEe-CC---------CCccCCcEEEEE
Confidence 9 556665555322 3577889998765 4444332 2345556643 2221111 10 123345789999
Q ss_pred CCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 239 NPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 239 sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
+|+|+.+++...++.|++|+.+++
T Consensus 172 ~~~g~l~v~~~~~~~i~~~~~~g~ 195 (286)
T 1q7f_A 172 NDKQEIFISDNRAHCVKVFNYEGQ 195 (286)
T ss_dssp CSSSEEEEEEGGGTEEEEEETTCC
T ss_pred CCCCCEEEEECCCCEEEEEcCCCC
Confidence 999998888888999999987665
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.01 E-value=6.4e-07 Score=74.34 Aligned_cols=235 Identities=14% Similarity=0.098 Sum_probs=139.2
Q ss_pred CCCCCCEEEEee----------cCCcEEEeecCCCcEEEEEecCC--------CceeeeeecCCeEEEEEcCCCcccccc
Q 024407 2 FQANSMTLITGS----------ADQTAKLWNVETGAQLFTFNFDS--------PARSVDFAVGDKLAVITTDPFMELNSA 63 (268)
Q Consensus 2 fs~d~~~l~s~s----------~D~tv~~wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (268)
||||++.|+.++ .+++|.+||..+++.+..+.... ....+.++|+++.+.+++.. ....
T Consensus 85 ~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~---~~~~ 161 (386)
T 3sjl_D 85 VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---PAPA 161 (386)
T ss_dssp ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---SSCE
T ss_pred ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC---CCCe
Confidence 799999998886 36889999999999988886532 46788899988776665421 0122
Q ss_pred eEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cceeeec-ccccCcccceE-EEE
Q 024407 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKES-DKETGHKKTIT-SLA 140 (268)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~-~~~~~h~~~v~-~v~ 140 (268)
+.+.+. .+.+.+..+.-.. +...+....+.+++.+.||.+.+.++.+ ++..... .....-..++. ...
T Consensus 162 VsVID~------~t~~vv~tI~v~g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~ 232 (386)
T 3sjl_D 162 VGVVDL------EGKAFKRMLDVPD---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 232 (386)
T ss_dssp EEEEET------TTTEEEEEEECCS---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE
T ss_pred EEEEEC------CCCcEEEEEECCC---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccce
Confidence 333322 2233344443211 1222323346777888999999999976 5542111 00000112221 234
Q ss_pred Ec-CCCCEEEEeeCCCcEEEEECCCcc--eeeeee-----------cCCceeEEEEccCCCeEEEeecC--------CCc
Q 024407 141 KA-ADGSHFLTGSLDKSAKLWDARTLE--LIKTYV-----------TERPVNAVTMSPLLDHVVLGGGQ--------DAS 198 (268)
Q Consensus 141 ~s-~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 198 (268)
|. ++|..++ .+.+++|.+.|+.+.. .+..+. .+.....+.+++.+..+++.-.. .+.
T Consensus 233 ~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~ 311 (386)
T 3sjl_D 233 YSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 311 (386)
T ss_dssp EETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred eEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCC
Confidence 43 6775444 5558999999997653 333332 01123346667777766665321 234
Q ss_pred eEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC-eEEe-eeCCCeEEEEeeCCC
Q 024407 199 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSS-GGEDGYVRLHHFDPD 262 (268)
Q Consensus 199 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~las-gs~Dg~i~i~~~~~~ 262 (268)
.++..|..++....++- .+ ..+..++++||++ .|.+ ...++.|.+++....
T Consensus 312 ~V~viD~~t~kv~~~i~-----------vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 312 FVVVLDAKTGERLAKFE-----------MG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp EEEEEETTTCCEEEEEE-----------EE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEECCCCeEEEEEE-----------CC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 56677777666544321 11 2577999999996 5555 456899999987643
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.00 E-value=4.3e-06 Score=66.56 Aligned_cols=227 Identities=8% Similarity=0.014 Sum_probs=138.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC---CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
+++++++.++...++.|.+||.+ ++... +... ..+..+.+.+.+.+.++.... .. +..+. .. +
T Consensus 27 ~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~--v~~~d----~~-g 92 (300)
T 2qc5_A 27 SSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGA-----NK--IGKLS----KK-G 92 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTT-----TE--EEEEC----TT-S
T ss_pred ECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCC-----Ce--EEEEC----CC-C
Confidence 46788888887788999999988 55433 3322 345666666656555543211 11 11111 01 1
Q ss_pred ce-EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 79 ES-VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 79 ~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
+. ...+......+..+.++++|+.+++...++.|..||.. ++... .. .......+..+++.+++...++...++.|
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YD-LPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-cc-CCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 11 11222334668899999999988887778899999987 55432 11 11233567889999999977777778899
Q ss_pred EEEECCCcceeeeeec---CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceE
Q 024407 158 KLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 158 ~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
..+|. +++... +.. ...+..+.+.+.+ .+.++... ...+..++. .+...... ...+...+.
T Consensus 170 ~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g-~l~v~~~~-~~~i~~~~~-~g~~~~~~-----------~~~~~~~~~ 233 (300)
T 2qc5_A 170 GRITN-TGKLEE-YPLPTNAAAPVGITSGNDG-ALWFVEIM-GNKIGRITT-TGEISEYD-----------IPTPNARPH 233 (300)
T ss_dssp EEECT-TCCEEE-EECSSTTCCEEEEEECTTS-SEEEEETT-TTEEEEECT-TCCEEEEE-----------CSSTTCCEE
T ss_pred EEECC-CCcEEE-eeCCCCCCCcceEEECCCC-CEEEEccC-CCEEEEEcC-CCcEEEEE-----------CCCCCCCce
Confidence 99998 444332 221 2346778888765 44444322 233555554 23222110 112234578
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
+++++++|+.+++...++.|..++.++
T Consensus 234 ~i~~d~~g~l~v~~~~~~~i~~~~~~g 260 (300)
T 2qc5_A 234 AITAGKNSEIWFTEWGANQIGRITNDN 260 (300)
T ss_dssp EEEECSTTCEEEEETTTTEEEEECTTS
T ss_pred EEEECCCCCEEEeccCCCeEEEECCCC
Confidence 999999999888776678888776643
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.93 E-value=2e-06 Score=71.56 Aligned_cols=200 Identities=10% Similarity=-0.022 Sum_probs=113.3
Q ss_pred CCCCCCCEEEEee----------cCCcEEEeecCCCcEEEEEecC--------CCceeeeeecCCeEEEEEcCCCccccc
Q 024407 1 MFQANSMTLITGS----------ADQTAKLWNVETGAQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNS 62 (268)
Q Consensus 1 ~fs~d~~~l~s~s----------~D~tv~~wd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (268)
.||||++.|+.+. .+++|.+||+.+.+.+..+... .....+.++|+++.+.+++... ..
T Consensus 72 ~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~---~~ 148 (373)
T 2mad_H 72 VAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA---GP 148 (373)
T ss_pred EECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC---CC
Confidence 3799999999986 3789999999998887777543 2356788899887777664210 11
Q ss_pred ceEeeeeeeCCCCCCCceEEE-EecC---------------------------CCCeE-----------------EEEEc
Q 024407 63 AIHVKRIARDPADQGGESVLI-LKGP---------------------------QGRIN-----------------RAVWG 97 (268)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~-~~~~---------------------------~~~v~-----------------~~~~~ 97 (268)
.+.+.+ . +++.+.. +.-. .+.+. ...+.
T Consensus 149 ~v~viD-~------t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~ 221 (373)
T 2mad_H 149 AVGLVV-Q------GGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQA 221 (373)
T ss_pred eEEEEE-C------CCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeE
Confidence 122211 1 1111111 1100 11111 01122
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCce--eeeccccc-------CcccceEEEEEcCCCCEEEEeeC----------CCcEE
Q 024407 98 PLNRTIISAGEDAIVRIWDTETGKL--LKESDKET-------GHKKTITSLAKAADGSHFLTGSL----------DKSAK 158 (268)
Q Consensus 98 ~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~-------~h~~~v~~v~~s~~~~~l~s~~~----------d~~i~ 158 (268)
+++..++..+.++.+.+.|+.++.. ...+.... -.+.....+++++++..+..+.. ++.|.
T Consensus 222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~ 301 (373)
T 2mad_H 222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence 2232222223445555555543211 11110000 01122334678899888777653 35799
Q ss_pred EEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCee
Q 024407 159 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 210 (268)
Q Consensus 159 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 210 (268)
++|+.+++.+.++........+.++|+++..+..+......+...|..++..
T Consensus 302 VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 302 SVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 9999999999998777778999999998844544443345667777665554
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.93 E-value=1.7e-06 Score=70.46 Aligned_cols=214 Identities=12% Similarity=0.044 Sum_probs=121.6
Q ss_pred CCCC-CCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQAN-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d-~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|+ +.++++...++.|.+||.++++. ..+.....+..+.+.+++.++++... .+...+. .+++.
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~-------gl~~~d~------~~g~~ 121 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDD-------GLFLRDT------ATGVL 121 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETT-------EEEEEET------TTCCE
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECC-------CEEEEEC------CCCcE
Confidence 6786 55677777889999999987754 34555667888888888877665422 1111111 12222
Q ss_pred EEEEec----C-CCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEE
Q 024407 81 VLILKG----P-QGRINRAVWGPLNRTIISAGE------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL 149 (268)
Q Consensus 81 ~~~~~~----~-~~~v~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~ 149 (268)
. .+.. . ...++++.++|+|+.+++... .+.|..+| +++... +. ........++++++++.++
T Consensus 122 ~-~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~---~~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 122 T-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF---ADISIPNSICFSPDGTTGY 194 (326)
T ss_dssp E-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE---EEESSEEEEEECTTSCEEE
T ss_pred E-EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee---CCCcccCCeEEcCCCCEEE
Confidence 1 1211 1 235789999999997665532 24555555 444322 21 1223467899999998765
Q ss_pred E-eeCCCcEEEEECC--Cc-ce-----eeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhh
Q 024407 150 T-GSLDKSAKLWDAR--TL-EL-----IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 219 (268)
Q Consensus 150 s-~~~d~~i~iwd~~--~~-~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 219 (268)
. .+.++.|.+||+. ++ +. +..+. .......+.+.+.+. ++++.... ..+..++.. +....
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~-~~v~~~d~~-g~~~~------- 264 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGE-GAVDRYDTD-GNHIA------- 264 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETT-TEEEEECTT-CCEEE-------
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCC-CEEEEECCC-CCEEE-------
Confidence 4 4567899999986 44 32 11111 123455677777654 44443222 234455542 22211
Q ss_pred hhhhccccccccceEEEEEC-CCCCeEE-eeeCC
Q 024407 220 QEEIGGVKGHFGPINALAFN-PDGKSFS-SGGED 251 (268)
Q Consensus 220 ~~~~~~~~~h~~~v~~~~~s-p~~~~la-sgs~D 251 (268)
.+..+...+++++|+ |+++.|. +...+
T Consensus 265 -----~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 265 -----RYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp -----EEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred -----EEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 112233468999998 8887654 44444
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.92 E-value=1e-06 Score=71.09 Aligned_cols=218 Identities=11% Similarity=0.083 Sum_probs=125.0
Q ss_pred CCCCCC-EEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQANSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~d~~-~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+|+++ ++++...++.|..|+. +++..........+..+.+.+++.+.+...... .+. .+. .. ++
T Consensus 52 ~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~-----~v~--~~~----~~-g~- 117 (305)
T 3dr2_A 52 WWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRR-----AIT--RSD----AD-GQ- 117 (305)
T ss_dssp EEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTT-----EEE--EEC----TT-SC-
T ss_pred EeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCC-----EEE--EEC----CC-CC-
Confidence 788988 6788888899999998 454332223345567788887777655443210 111 111 01 11
Q ss_pred EEEEe----cC-CCCeEEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCceeeecccccCcccceEE
Q 024407 81 VLILK----GP-QGRINRAVWGPLNRTIIS----AGE-------------DAIVRIWDTETGKLLKESDKETGHKKTITS 138 (268)
Q Consensus 81 ~~~~~----~~-~~~v~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 138 (268)
...+. +. ...++++.++|+|+..++ |.. .+.|..||..+++..... .......
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-----~~~~p~g 192 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-----DLDHPNG 192 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-----EESSEEE
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-----cCCCCcc
Confidence 11111 11 234678999999998876 332 256778887666543221 2234578
Q ss_pred EEEcCCCCEEEEeeCC------CcEEEEECCCccee--eeee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCC
Q 024407 139 LAKAADGSHFLTGSLD------KSAKLWDARTLELI--KTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG 208 (268)
Q Consensus 139 v~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 208 (268)
++++||+..|+.+... +.|..||+...... ..+. .......+.+.+.+. +.++.. + -+..++.. +
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~--gv~~~~~~-g 267 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-T--GVCVFDSD-G 267 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCS-S--EEEEECTT-S
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecC-C--cEEEECCC-C
Confidence 9999999987776654 78999998654310 1111 112234566777654 454432 2 25555543 2
Q ss_pred eeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEE
Q 024407 209 KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 256 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i 256 (268)
..... +..+ ..+.+++|+|+++.|..++.++..++
T Consensus 268 ~~~~~------------~~~~-~~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 QLLGH------------IPTP-GTASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CEEEE------------EECS-SCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CEEEE------------EECC-CceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 21111 1111 24788999999988777777654444
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.92 E-value=2e-06 Score=69.07 Aligned_cols=161 Identities=8% Similarity=0.007 Sum_probs=93.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccC-cccceEEEEEcCCCCEEEEeeCC---------CcEE
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG-HKKTITSLAKAADGSHFLTGSLD---------KSAK 158 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~~~~~l~s~~~d---------~~i~ 158 (268)
..+.++.++|+|+++++ . ++.|.+||..+++.......... ....+..++++++|..+++...+ ..-.
T Consensus 54 ~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 54 APVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp SCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred CceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcE
Confidence 35677889999995554 3 56799999988764322111111 22457889999999976654321 2234
Q ss_pred EEECCC-cceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEecc--CCCeee-eEeeehhhhhhhccccccccceE
Q 024407 159 LWDART-LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH--RAGKFE-AKFFDKILQEEIGGVKGHFGPIN 234 (268)
Q Consensus 159 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~--~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~ 234 (268)
+|.+.. ++...........+.++++|++..++++.... ..+..++. ..+... .+.+ ..+..+.....
T Consensus 132 l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~-~~i~~~~~d~~~G~~~~~~~~--------~~~~~~~~~p~ 202 (297)
T 3g4e_A 132 LYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLS-YSVDAFDYDLQTGQISNRRSV--------YKLEKEEQIPD 202 (297)
T ss_dssp EEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGG-TEEEEEEECTTTCCEEEEEEE--------EECCGGGCEEE
T ss_pred EEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCC-CcEEEEeccCCCCcccCcEEE--------EECCCCCCCCC
Confidence 444432 23222222223467899999887665554332 33444442 344321 1111 11112223567
Q ss_pred EEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 235 ALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 235 ~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
.+++.++|++.++...++.|.+|+.+
T Consensus 203 g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 203 GMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp EEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred eeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 89999999988888778888777665
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.90 E-value=1.3e-06 Score=70.10 Aligned_cols=185 Identities=9% Similarity=-0.013 Sum_probs=111.6
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC-----CCceeeeeecCCeEEEEEcCCCcc----cccceEeeeeeeC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFD-----SPARSVDFAVGDKLAVITTDPFME----LNSAIHVKRIARD 72 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 72 (268)
|+++++++++ . +..|.+||.++++........ ..+..+.+.+.+.+.+........ ....-.++.+..
T Consensus 61 ~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~- 137 (297)
T 3g4e_A 61 LRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP- 137 (297)
T ss_dssp EBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT-
T ss_pred ECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC-
Confidence 6789985554 3 568999999887654333321 124456677766655433211000 001112222221
Q ss_pred CCCCCCceEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEC--CCCcee--eecccccCcccceEEEEEcCCCCE
Q 024407 73 PADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDT--ETGKLL--KESDKETGHKKTITSLAKAADGSH 147 (268)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~--~~~~~~--~~~~~~~~h~~~v~~v~~s~~~~~ 147 (268)
.++.. .+..+-...+.++|+|+++.+ ++.+.++.|..||+ .++... ..+.....+......++++++|++
T Consensus 138 ----~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 138 ----DHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp ----TSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred ----CCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE
Confidence 12222 222333445789999999876 45567889999987 455431 111111123345678999999988
Q ss_pred EEEeeCCCcEEEEECCCcceeeeeecC-CceeEEEEc-cCCCeEEEeec
Q 024407 148 FLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMS-PLLDHVVLGGG 194 (268)
Q Consensus 148 l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 194 (268)
.++...++.|..||+.+++.+..+..+ ..+.+++|. |+++.++++..
T Consensus 213 wva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 213 WVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 888778889999999988887777654 467788887 77666666543
No 211
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.88 E-value=1.1e-06 Score=78.81 Aligned_cols=161 Identities=11% Similarity=0.033 Sum_probs=95.1
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecC-C-----CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFD-S-----PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
++..|+.++.|+.|..+|.++|+.++.+... . .+.......++.+.+............+...+ ..++
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D------~~tG 200 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYD------AETG 200 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEE------TTTC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEE------CCCC
Confidence 4567888999999999999999999988754 2 11111111233333322211000011111111 1233
Q ss_pred ceEEEEecCC--------------------------------CCeEEEEEcCCCCEEEEEeCCC----------------
Q 024407 79 ESVLILKGPQ--------------------------------GRINRAVWGPLNRTIISAGEDA---------------- 110 (268)
Q Consensus 79 ~~~~~~~~~~--------------------------------~~v~~~~~~~~~~~l~s~~~dg---------------- 110 (268)
+.+..+.... .....+.++|+++.++.+..++
T Consensus 201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence 4443332211 1113467888888888877664
Q ss_pred ---cEEEEECCCCceeeecccccCc-------ccceEEEEEcCCC---CEEEEeeCCCcEEEEECCCcceeeeee
Q 024407 111 ---IVRIWDTETGKLLKESDKETGH-------KKTITSLAKAADG---SHFLTGSLDKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 111 ---~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~v~~s~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~ 172 (268)
.|..+|.++++.+...... .| .....-+....+| ..++.++.+|.+.++|.++++.+..+.
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQET-PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred eeEEEEEEECCCCCEEEEEecC-CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 5999999999887654421 12 1222223334467 678999999999999999998876543
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.86 E-value=6.3e-07 Score=74.38 Aligned_cols=120 Identities=11% Similarity=-0.012 Sum_probs=85.3
Q ss_pred CCCCCCCEEEEeec-----CCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 1 MFQANSMTLITGSA-----DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 1 ~fs~d~~~l~s~s~-----D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
+..||++.++.+.. +++|.+.|..+++.+..+..
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v----------------------------------------- 77 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG----------------------------------------- 77 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-----------------------------------------
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-----------------------------------------
Confidence 35688888877766 57888888877766554431
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeeecccccCc----ccceEEEEE
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLNRTIISAG----------EDAIVRIWDTETGKLLKESDKETGH----KKTITSLAK 141 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~h----~~~v~~v~~ 141 (268)
...+ . +.++|||++++.+. .++.|.+||..+.+.+..+....+. ......+++
T Consensus 78 -----------G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 78 -----------GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp -----------CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred -----------CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence 1222 2 67888888776654 3678999999999887765421111 113446889
Q ss_pred cCCCCEEEEeeC--CCcEEEEECCCcceeeeeecC
Q 024407 142 AADGSHFLTGSL--DKSAKLWDARTLELIKTYVTE 174 (268)
Q Consensus 142 s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~ 174 (268)
+|||.+++++.. ++.|.++|+.+++.+.++..+
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~ 179 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 179 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC
Confidence 999999888764 689999999999998887543
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.86 E-value=1.5e-05 Score=63.26 Aligned_cols=224 Identities=10% Similarity=0.107 Sum_probs=131.3
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEec---CCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
+++++++.++...++.|..+|.+ ++. ..+.. ...+..+.+.+.+.+.++.... .. +..+. .. +
T Consensus 69 ~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~--i~~~~----~~-g 134 (300)
T 2qc5_A 69 VSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNG-----DR--IGKLT----AD-G 134 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTT-----TE--EEEEC----TT-S
T ss_pred ECCCCCEEEEecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCC-----Ce--EEEEC----CC-C
Confidence 46788888877778899999988 554 33332 2345666666666655543311 01 11111 01 1
Q ss_pred ceE-EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 79 ESV-LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 79 ~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
+.. ..+......+..+.++|+++..++...++.|..||. +++... +. ...+...+..+++++++...++....+.|
T Consensus 135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 211 (300)
T 2qc5_A 135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YP-LPTNAAAPVGITSGNDGALWFVEIMGNKI 211 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-ee-CCCCCCCcceEEECCCCCEEEEccCCCEE
Confidence 211 122334456889999999997777667889999998 555432 21 11234567889999999877777777889
Q ss_pred EEEECCCcceeee-ee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEE
Q 024407 158 KLWDARTLELIKT-YV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 235 (268)
Q Consensus 158 ~iwd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 235 (268)
..||. +++.... .. ....+..+.+.+.+. ++++... ...+..++. .+.+.. +. +......+.+
T Consensus 212 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~-~~~i~~~~~-~g~~~~--~~---------~~~~~~~~~~ 276 (300)
T 2qc5_A 212 GRITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEWG-ANQIGRITN-DNTIQE--YQ---------LQTENAEPHG 276 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETT-TTEEEEECT-TSCEEE--EE---------CCSTTCCCCC
T ss_pred EEEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEeccC-CCeEEEECC-CCcEEE--EE---------CCccCCccce
Confidence 99998 4443222 11 123467788888754 5544322 233445554 232221 11 1112245788
Q ss_pred EEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 236 LAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 236 ~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
++++++|+.+++.. . +|+++++
T Consensus 277 i~~~~~g~l~v~~~-~---~i~~~~p 298 (300)
T 2qc5_A 277 ITFGKDGSVWFALK-C---KIGKLNL 298 (300)
T ss_dssp EEECTTSCEEEECS-S---EEEEEEE
T ss_pred eEeCCCCCEEEEcc-C---ceEEeCC
Confidence 99999999777655 3 4444443
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.85 E-value=4e-06 Score=70.65 Aligned_cols=233 Identities=10% Similarity=-0.003 Sum_probs=140.0
Q ss_pred CCCCCCEEEEee----------cCCcEEEeecCCCcEEEEEecC--------CCceeeeeecCCeEEEEEcCCCcccccc
Q 024407 2 FQANSMTLITGS----------ADQTAKLWNVETGAQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSA 63 (268)
Q Consensus 2 fs~d~~~l~s~s----------~D~tv~~wd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (268)
||||++.|+.+. .+++|.++|+.+++.+..+... .....+.++++++.+.+++... .+.
T Consensus 125 ~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~---~~~ 201 (426)
T 3c75_H 125 AAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP---APA 201 (426)
T ss_dssp ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS---SCE
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC---CCe
Confidence 799999999887 4789999999999998888653 3467888999887776654210 112
Q ss_pred eEeeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeee----cccccCcccceEE
Q 024407 64 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKE----SDKETGHKKTITS 138 (268)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~h~~~v~~ 138 (268)
+.+.+. .+.+.+..+.-.. +....|++ +.+++.+.||.+.+.+..+++.... +.. +.......
T Consensus 202 VsVID~------~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v--~~~p~~~~ 269 (426)
T 3c75_H 202 VGVVDL------EGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT--EDELLINH 269 (426)
T ss_dssp EEEEET------TTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC--TTSCBCSC
T ss_pred EEEEEC------CCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc--CCCceeeE
Confidence 222222 1223333333211 12233443 5566777888888888865554321 110 11111123
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEECCCcce--eeeeec-----------CCceeEEEEccCCCeEEEeecC--------CC
Q 024407 139 LAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYVT-----------ERPVNAVTMSPLLDHVVLGGGQ--------DA 197 (268)
Q Consensus 139 v~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~--------~~ 197 (268)
+.+.+++..++..+..+.+.+.|+..... +..+.. +.....+.++|++..+++.... ..
T Consensus 270 ~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s 349 (426)
T 3c75_H 270 PAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAAS 349 (426)
T ss_dssp CEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCE
T ss_pred eeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCC
Confidence 46788888887778889999999865432 111110 1112236778877766654321 12
Q ss_pred ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC-eEEeee-CCCeEEEEeeCCC
Q 024407 198 SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSGG-EDGYVRLHHFDPD 262 (268)
Q Consensus 198 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~lasgs-~Dg~i~i~~~~~~ 262 (268)
..+...|..+.....++ ... .....++|+||++ .+++.. .++.|.|++....
T Consensus 350 ~~VsVID~~T~kvv~~I------------~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 350 RFVVVLNAETGERINKI------------ELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEEEEETTTCCEEEEE------------EEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CEEEEEECCCCeEEEEE------------ECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 34666666665544332 111 1367899999998 777777 5899999988743
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.84 E-value=4e-07 Score=75.43 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=64.3
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCE-EEEee-CCCcEEEEEC
Q 024407 94 AVWGPLNRTIISAGE---------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGS-LDKSAKLWDA 162 (268)
Q Consensus 94 ~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~~-~d~~i~iwd~ 162 (268)
+.++|++++++.+.. ++.+.++|+.+++.+..+.. ......+++++|+.. +++.. .+++|.++|+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 578999988876532 23566999999988876652 225788999999985 55666 5999999999
Q ss_pred CCcceeeeeecCCceeEEEEc
Q 024407 163 RTLELIKTYVTERPVNAVTMS 183 (268)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~ 183 (268)
++.+.+.++........+++.
T Consensus 345 ~t~kvv~~I~vg~~P~~i~~~ 365 (368)
T 1mda_H 345 ASDQDQSSVELDKGPESLSVQ 365 (368)
T ss_dssp SSCEEEEECCCCSCCCEEECC
T ss_pred CCCcEEEEEECCCCCCEEEee
Confidence 999999888665555555544
No 216
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.84 E-value=2.2e-09 Score=89.41 Aligned_cols=182 Identities=14% Similarity=0.062 Sum_probs=88.6
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
++..+++++.|+.|+.||.++|+.++.++. .++..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s-------------------------------------------- 42 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQ-------------------------------------------- 42 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCC--------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCcee--------------------------------------------
Confidence 577899999999999999999999887753 21110
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCC
Q 024407 85 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 85 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~ 164 (268)
..+.++++.+++++.|+.|+.||.++++.+...... ....+.+..+..++..+++++.|+.|..||.++
T Consensus 43 ---------~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~--~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~t 111 (369)
T 2hz6_A 43 ---------VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT--IPELVQASPCRSSDGILYMGKKQDIWYVIDLLT 111 (369)
T ss_dssp ---------CC-----CCEEECTTTCCEEEC-----CCSEECSCC--HHHHHTTCSCC-----CCCCEEEEEEEEECCC-
T ss_pred ---------cceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc--CccccccCceEecCCEEEEEeCCCEEEEEECCC
Confidence 001123456677789999999999988765433211 011110000001345677888899999999999
Q ss_pred cceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC--
Q 024407 165 LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-- 242 (268)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-- 242 (268)
++.+..+.... ....+|.+..+++++. ...+..+|.+.+.....+- .+ .....+++++.
T Consensus 112 G~~~w~~~~~~---~~~~~p~~~~v~~~~~--dg~v~a~d~~tG~~~W~~~------------~~--~~~~~~~~~~~~~ 172 (369)
T 2hz6_A 112 GEKQQTLSSAF---ADSLSPSTSLLYLGRT--EYTITMYDTKTRELRWNAT------------YF--DYAASLPEDDVDY 172 (369)
T ss_dssp ------------------------EEEEEE--EEEEECCCSSSSSCCCEEE------------EE--EECCBCCCCCTTC
T ss_pred CcEEEEecCCC---cccccccCCEEEEEec--CCEEEEEECCCCCEEEeEe------------cc--cccCccccCCccc
Confidence 98766554322 1234554455554432 2356677776665422210 00 01122333432
Q ss_pred -CeEEeeeCCCeEEEEeeCC
Q 024407 243 -KSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 243 -~~lasgs~Dg~i~i~~~~~ 261 (268)
..++.++.||.++.|+.+.
T Consensus 173 ~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 173 KMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp CCCEEEEETSCEEEEECTTT
T ss_pred cceEEEECCCCEEEEEECCC
Confidence 4566678899988887653
No 217
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.81 E-value=1e-06 Score=69.32 Aligned_cols=174 Identities=10% Similarity=0.032 Sum_probs=106.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC--CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|+++++++++.. ++.|.+||.+..... .+... ..+..+.+.+.+.+.++... ...+.. +.. .+..
T Consensus 74 ~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~--~~~----~~~~ 140 (270)
T 1rwi_B 74 VDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRG-----NNRVVK--LAA----GSKT 140 (270)
T ss_dssp ECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGG-----GTEEEE--ECT----TCCS
T ss_pred ECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECC-----CCEEEE--EEC----CCce
Confidence 578888666665 889999998765432 22211 34567777776665444321 111111 110 1111
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
...........+..+.++|+|+.+++...++.|.+||........... .+...+..+++++++..+++...++.|..
T Consensus 141 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 141 QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQVVK 217 (270)
T ss_dssp CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc---cCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence 111112233457789999999977777778999999988765432211 12256788999999977777778899999
Q ss_pred EECCCcceeeeeecC-CceeEEEEccCCCeEEEe
Q 024407 160 WDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 160 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 192 (268)
||............. ..+..+++++++. ++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~ 250 (270)
T 1rwi_B 218 LLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVA 250 (270)
T ss_dssp ECTTCSCCEECCCCSCSCEEEEEECTTCC-EEEE
T ss_pred EcCCCCcceeeccCCCCCceeEEECCCCC-EEEE
Confidence 998765432221111 3467788888764 4443
No 218
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.81 E-value=3.4e-06 Score=75.84 Aligned_cols=159 Identities=10% Similarity=0.088 Sum_probs=92.3
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecC-CCc--eeeeeec---CCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPA--RSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~-~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
++..++.++.|+.|..+|.++|+.++.+... ... ..+...| ++.+++............+...+ ..++
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D------~~tG 193 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYD------AETG 193 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEE------TTTC
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEE------CCCC
Confidence 4567889999999999999999999988753 211 1111111 33333322110000011111111 1233
Q ss_pred ceEEEEec-------------------------------CCCCeEEEEEcCCCCEEEEEeCCCc----------------
Q 024407 79 ESVLILKG-------------------------------PQGRINRAVWGPLNRTIISAGEDAI---------------- 111 (268)
Q Consensus 79 ~~~~~~~~-------------------------------~~~~v~~~~~~~~~~~l~s~~~dg~---------------- 111 (268)
+.+..+.. +...-..+.++|+.+.++.+..++.
T Consensus 194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y 273 (689)
T 1yiq_A 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLF 273 (689)
T ss_dssp CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTT
T ss_pred cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 33333321 0011124678888888988887763
Q ss_pred ---EEEEECCCCceeeecccccCc-------ccceEEEEEcCCCC---EEEEeeCCCcEEEEECCCcceeee
Q 024407 112 ---VRIWDTETGKLLKESDKETGH-------KKTITSLAKAADGS---HFLTGSLDKSAKLWDARTLELIKT 170 (268)
Q Consensus 112 ---i~iwd~~~~~~~~~~~~~~~h-------~~~v~~v~~s~~~~---~l~s~~~d~~i~iwd~~~~~~~~~ 170 (268)
|.-+|.++++.+...... .| ..+..-.....+|. .++.++.+|.+.++|.++++.+..
T Consensus 274 ~~~v~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 274 LSSIVAVNADTGEYVWHYQTT-PGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp TTEEEEEETTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred eeeEEEEEccCCceeEeeecC-CcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 999999999887655421 12 12222223333565 788999999999999999988643
No 219
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.79 E-value=2.8e-06 Score=66.88 Aligned_cols=180 Identities=11% Similarity=0.069 Sum_probs=113.4
Q ss_pred CCCCCCEEEEeec--CCcEEEeecCCCcEEEEEecCCCcee--eeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 2 FQANSMTLITGSA--DQTAKLWNVETGAQLFTFNFDSPARS--VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 2 fs~d~~~l~s~s~--D~tv~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
|++|+.+.++.+. +.+|++.|+++++.+..+......+. +.+. ++.+.++... .+.+.+.+ ..+
T Consensus 28 ~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~-----~~~v~viD------~~t 95 (266)
T 2iwa_A 28 YAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWL-----KNIGFIYD------RRT 95 (266)
T ss_dssp ECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETT-----CSEEEEEE------TTT
T ss_pred EeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEec-----CCEEEEEE------CCC
Confidence 6788755555443 68999999999999888875443333 3333 3343333211 11122211 123
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccccc-Ccc-cceEEEEEcCCCCEEEEeeCCC
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET-GHK-KTITSLAKAADGSHFLTGSLDK 155 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~-~~v~~v~~s~~~~~l~s~~~d~ 155 (268)
.+.+..++-....- ..++++|++++.+..++.|.++|..+.+....+.... +.+ ...+.+.+. ++...+....++
T Consensus 96 ~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~ 172 (266)
T 2iwa_A 96 LSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD 172 (266)
T ss_dssp TEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred CcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence 44555554221111 2355688877777778999999999988776654321 111 235677777 676555665688
Q ss_pred cEEEEECCCcceeeeeecC--------------CceeEEEEccCCCeEEEeecCC
Q 024407 156 SAKLWDARTLELIKTYVTE--------------RPVNAVTMSPLLDHVVLGGGQD 196 (268)
Q Consensus 156 ~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 196 (268)
.|.+.|+++++++..+... ...+.++++|.++.+++++...
T Consensus 173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 9999999999998887542 2458999999888887776544
No 220
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.74 E-value=2e-06 Score=67.18 Aligned_cols=176 Identities=13% Similarity=0.101 Sum_probs=110.7
Q ss_pred CCCCCCEEEEeecCC--cEEEeecCCCcEEEEEecCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~--tv~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+ ++.+..+++.+| +|+..|+++++.+..+..+......-+.+ ++.+.++... .+.+.+.+ ..+.
T Consensus 50 ~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~-----~~~v~v~D------~~t~ 117 (262)
T 3nol_A 50 YR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK-----NGLGFVWN------IRNL 117 (262)
T ss_dssp EE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEE------TTTC
T ss_pred EE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee-----CCEEEEEE------CccC
Confidence 45 667777777776 99999999999999888766554432222 3344333211 11111111 1344
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccccc-Ccc-cceEEEEEcCCCCEEEEeeCCCc
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET-GHK-KTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~-~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
+.+..++-.. ....++++++.|+.+..++.|.++|..+.+....+.... +.+ ..++.+.+. +|...+..-.++.
T Consensus 118 ~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 118 RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCe
Confidence 4555554321 112333567777766668889999999988776654321 222 234456665 7766666667889
Q ss_pred EEEEECCCcceeeeeecC-------------CceeEEEEccCCCeEEEee
Q 024407 157 AKLWDARTLELIKTYVTE-------------RPVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 193 (268)
|.+.|+++++++..+... ...+.++++|..+.+++++
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 999999999988876532 2458899999877777654
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.72 E-value=7.5e-06 Score=67.15 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCEE-EEEe---CCCcEEEEECCCCceeeecccc------------cC--------------cccceEEEE
Q 024407 91 INRAVWGPLNRTI-ISAG---EDAIVRIWDTETGKLLKESDKE------------TG--------------HKKTITSLA 140 (268)
Q Consensus 91 v~~~~~~~~~~~l-~s~~---~dg~i~iwd~~~~~~~~~~~~~------------~~--------------h~~~v~~v~ 140 (268)
+..++++|++..+ ++-. .++.|.+||+.+++..+.+... .+ ....+..++
T Consensus 122 ~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia 201 (343)
T 2qe8_A 122 VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV 201 (343)
T ss_dssp CCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE
T ss_pred cceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE
Confidence 4567777765444 4444 5788999998877655433110 00 012367899
Q ss_pred EcCCCCEEEEeeCCC-cEEEEECC---Cc-----ce---eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCC
Q 024407 141 KAADGSHFLTGSLDK-SAKLWDAR---TL-----EL---IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG 208 (268)
Q Consensus 141 ~s~~~~~l~s~~~d~-~i~iwd~~---~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 208 (268)
++|++..|..+..++ .+..++.. .+ +. +...........+++++.+. ++++. .....|..||...+
T Consensus 202 ~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~-~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 202 LDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGD-LAHSAIGVITSADR 279 (343)
T ss_dssp ECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEE-GGGTEEEEEETTTT
T ss_pred eccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEc-cCCCeEEEEECCCC
Confidence 999999888777665 44444421 11 00 11111122345677888653 44432 22345666776344
Q ss_pred eeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeE
Q 024407 209 KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV 254 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i 254 (268)
.+...... .+.....+++|.++++.+++.+..+.+
T Consensus 280 ~~~~~~~~-----------~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 280 AYKLLVTD-----------EKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEEEEEEC-----------GGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred CEEEEEEC-----------CceecCCeeEECCCCcEEEEeCccccc
Confidence 43221110 122457899999999888877755444
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.70 E-value=2.7e-06 Score=69.84 Aligned_cols=170 Identities=9% Similarity=-0.020 Sum_probs=101.7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeeecccc---cCcccceEEEEEcCCC-CEEEEee---C
Q 024407 86 GPQGRINRAVWGPLNRTIISAGE-----DAIVRIWDTETGKLLKESDKE---TGHKKTITSLAKAADG-SHFLTGS---L 153 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~s~~~-~~l~s~~---~ 153 (268)
++-..+..+.++|+++.+++-.. ++.|.+||+.+++.+..+... ..+......+++++++ ..+++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 34567888999999876665433 688999999998865544321 1233456889999764 4445555 6
Q ss_pred CCcEEEEECCCcceeeeeec------------------------------CCceeEEEEccCCCeEEEeecCCCceEEEe
Q 024407 154 DKSAKLWDARTLELIKTYVT------------------------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTT 203 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 203 (268)
++.|.+||+.+++....+.. ....+.++++|++..+.++.... ..++..
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~-~~l~~~ 222 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS-TSMYRI 222 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC-SEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC-CeEEEE
Confidence 78999999987665443211 01246677777765555543322 122222
Q ss_pred ccC---CCeeeeEeeehhhhhhhcc--ccccccceEEEEECCCCCeEEeeeCCCeEEEEee-CCCc
Q 024407 204 DHR---AGKFEAKFFDKILQEEIGG--VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF-DPDY 263 (268)
Q Consensus 204 d~~---~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~-~~~~ 263 (268)
+.. .+.. . ..+.... ..++......++++++|+.+++...++.|.+|+. +++.
T Consensus 223 ~~~~~~~~~~-----~--~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 223 KSADLSNLQL-----T--DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp EHHHHTCTTC-----C--HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred EHHHhcCCCC-----C--hhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence 110 0000 0 0000011 1133334567999999999999999999999987 5443
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.63 E-value=3.2e-06 Score=76.08 Aligned_cols=204 Identities=10% Similarity=0.031 Sum_probs=112.2
Q ss_pred ceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCc-----
Q 024407 38 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGPLNRTIISAGEDAI----- 111 (268)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~----- 111 (268)
+..+.++|+++.++.+.+....-+..+.++++ .+++.+.. +.+. ....+.|+ |++.|+.++.+..
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl------~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDV------ESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEET------TTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC----
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEEC------CCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccc
Confidence 55667888777665544322222233444443 23333221 2211 12457899 9999988887744
Q ss_pred --------EEEEECCCCceee-ecccccC-cccceEEEEEcCCCCEEEEee----CCCcEEEEECCCcc-eeeeeecCCc
Q 024407 112 --------VRIWDTETGKLLK-ESDKETG-HKKTITSLAKAADGSHFLTGS----LDKSAKLWDARTLE-LIKTYVTERP 176 (268)
Q Consensus 112 --------i~iwd~~~~~~~~-~~~~~~~-h~~~v~~v~~s~~~~~l~s~~----~d~~i~iwd~~~~~-~~~~~~~~~~ 176 (268)
|++|++.++.... .+..... |...+..+.++||+.+|+... .+..|.++|+.+++ ....+.....
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 9999998764311 1212223 455678899999999886433 23589999997753 2233322222
Q ss_pred eeEEEEccCCCeEEEeecCCC--ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeC-CC-
Q 024407 177 VNAVTMSPLLDHVVLGGGQDA--SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DG- 252 (268)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~-Dg- 252 (268)
.....+++.++.+++.+..+. ..+..++...+.. ..+..+..|...+. .|+|++++|+.... |+
T Consensus 282 ~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~----------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 282 ADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP----------AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG----------GGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc----------cccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence 222225566676666554432 3444444433211 11222334444554 88999988776554 55
Q ss_pred -eEEEEeeCCC
Q 024407 253 -YVRLHHFDPD 262 (268)
Q Consensus 253 -~i~i~~~~~~ 262 (268)
.|++|++++.
T Consensus 350 ~~l~~~d~~g~ 360 (693)
T 3iuj_A 350 ARVEQFDYEGK 360 (693)
T ss_dssp EEEEEECTTSC
T ss_pred eEEEEEECCCC
Confidence 4666666544
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.63 E-value=3e-05 Score=63.07 Aligned_cols=182 Identities=15% Similarity=0.086 Sum_probs=106.0
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC-----CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFD-----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
|+|+++++++. .+ .|.+||+++++........ ..+..+.+.+.+.+.+...... .......++.+.
T Consensus 97 ~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-~~~~~~~l~~~~------ 167 (326)
T 2ghs_A 97 KISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-AETGAGSIYHVA------ 167 (326)
T ss_dssp EEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-CCTTCEEEEEEE------
T ss_pred EeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-CCCCceEEEEEe------
Confidence 57888877754 44 5999999888754333221 1245666777666554332100 000112233332
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECC--CC-cee--eecccccCcccceEEEEEcCCCCEEEE
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE--TG-KLL--KESDKETGHKKTITSLAKAADGSHFLT 150 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~--~~-~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s 150 (268)
.++ ...+..+....+.++|+|+++.++ +.+.++.|.+||+. ++ +.. ..+............++++++|.+.++
T Consensus 168 ~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva 246 (326)
T 2ghs_A 168 KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA 246 (326)
T ss_dssp TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE
Confidence 112 222222334567899999998764 44567899999986 55 321 111111122345678889999987777
Q ss_pred eeCCCcEEEEECCCcceeeeeecC-CceeEEEEc-cCCCeEEEeec
Q 024407 151 GSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMS-PLLDHVVLGGG 194 (268)
Q Consensus 151 ~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 194 (268)
...++.|..||+ +++.+..+..+ ..+.++++. +++..++++..
T Consensus 247 ~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 247 RWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 767789999998 45665555433 357778887 66666655443
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.62 E-value=1.5e-05 Score=67.00 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=98.2
Q ss_pred EEcCCCCEEEEEeCC------CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee----------------
Q 024407 95 VWGPLNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---------------- 152 (268)
Q Consensus 95 ~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~---------------- 152 (268)
..+|+| .++++..+ |.|.++|.++.+.+........-...-..+-++|+++.++++.
T Consensus 144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 445666 55555444 7899999999988776653211112233567799999999885
Q ss_pred ---CCCcEEEEECCCcceeeeeecC---CceeEEEE--ccCCCeEEEeec-----CCCce-EEEeccCCCeeeeEeeehh
Q 024407 153 ---LDKSAKLWDARTLELIKTYVTE---RPVNAVTM--SPLLDHVVLGGG-----QDASA-VTTTDHRAGKFEAKFFDKI 218 (268)
Q Consensus 153 ---~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~-----~~~~~-i~~~d~~~~~~~~~~~~~~ 218 (268)
.+.+|.+||+.+++.++++... .....+.+ +|++.+..++.. .++.. +..+| .+.+.....-..
T Consensus 223 ~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d--~g~~~~~~vIdi 300 (462)
T 2ece_A 223 KDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE--DGKWNAEKVIEI 300 (462)
T ss_dssp HHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE--TTEEEEEEEEEE
T ss_pred hhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec--CCceeEEEEEeC
Confidence 3789999999998887777653 12334444 898887776654 33222 22333 244332211000
Q ss_pred hhh----hhcccc----ccccceEEEEECCCCCeEEeee-CCCeEEEEeeC
Q 024407 219 LQE----EIGGVK----GHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFD 260 (268)
Q Consensus 219 ~~~----~~~~~~----~h~~~v~~~~~sp~~~~lasgs-~Dg~i~i~~~~ 260 (268)
... .+..+. +-......+.+||||++|..+. ..+.|.+|++.
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 000 000000 0013467899999999876555 47899999985
No 226
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.59 E-value=5.1e-06 Score=66.70 Aligned_cols=155 Identities=8% Similarity=0.067 Sum_probs=94.3
Q ss_pred CCCCCCEEEEeecC---------------CcEEEeecCCCcEEEEEecCCCceeeeee----cCCeEEEEEcCCCccccc
Q 024407 2 FQANSMTLITGSAD---------------QTAKLWNVETGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNS 62 (268)
Q Consensus 2 fs~d~~~l~s~s~D---------------~tv~~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 62 (268)
|+++++++++.+.+ +.|..||.+ ++..........+..+.+. +.+..+.++... ..
T Consensus 124 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~----~~ 198 (314)
T 1pjx_A 124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP----TK 198 (314)
T ss_dssp ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT----TT
T ss_pred ECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECC----CC
Confidence 57889888887766 567777766 5544333333345677777 766433333211 11
Q ss_pred ceEeeeeeeCCCCCCCceEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEE
Q 024407 63 AIHVKRIARDPADQGGESVLILKGPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 141 (268)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~ 141 (268)
.+..++...............+.++. ..+..++++++|+.+++...++.|..||.++++....+. .+...+.++++
T Consensus 199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~i~~ 275 (314)
T 1pjx_A 199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHF 275 (314)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEE
T ss_pred eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---CCCCCceeEEE
Confidence 22222221100000001122233443 567889999999988888788999999998776554432 23467889999
Q ss_pred cCCCCEE-EEeeCCCcEEEEECCC
Q 024407 142 AADGSHF-LTGSLDKSAKLWDART 164 (268)
Q Consensus 142 s~~~~~l-~s~~~d~~i~iwd~~~ 164 (268)
++++..| ++...++.|..|++..
T Consensus 276 ~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 276 KPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999955 4555678899998764
No 227
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.55 E-value=1.1e-05 Score=63.09 Aligned_cols=172 Identities=10% Similarity=0.059 Sum_probs=108.5
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 83 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (268)
++.+.++.+.++.|+..|+++++.+..+ .+...+..-..+ ++.+.++... .+.+.+.+ ..+.+.+..
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~-----~~~v~V~D------~~Tl~~~~t 131 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT-----EGLLFTWS------GMPPQRERT 131 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS-----SCEEEEEE------TTTTEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc-----CCEEEEEE------CCcCcEEEE
Confidence 4567788888899999999999988877 655544422222 2333332211 11111111 134455555
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcc---cceEEEEEcCCCCEEEEeeCCCcEEEE
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK---KTITSLAKAADGSHFLTGSLDKSAKLW 160 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~~~l~s~~~d~~i~iw 160 (268)
++-.. .-..+ +++++.|+.+..++.|.++|..+.+....+.... +. ..++.+.+. +|...+..-.++.|.+.
T Consensus 132 i~~~~-eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 132 TRYSG-EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EECSS-CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EeCCC-ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 54321 11222 3567888777779999999999988776654321 21 234566665 77666666578899999
Q ss_pred ECCCcceeeeeecC--------------CceeEEEEccCCCeEEEee
Q 024407 161 DARTLELIKTYVTE--------------RPVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 161 d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 193 (268)
|+++++++..+... ...+.++++|..+.+++++
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999988876421 2468899999877777654
No 228
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.54 E-value=1.1e-05 Score=70.22 Aligned_cols=231 Identities=8% Similarity=-0.010 Sum_probs=127.4
Q ss_pred CCCCEEEEeec-CCcEEEeecCCCcEEEEEec--CCCceeeee-e-cCCeEEEEEc--------CCCc-----ccccceE
Q 024407 4 ANSMTLITGSA-DQTAKLWNVETGAQLFTFNF--DSPARSVDF-A-VGDKLAVITT--------DPFM-----ELNSAIH 65 (268)
Q Consensus 4 ~d~~~l~s~s~-D~tv~~wd~~~~~~~~~~~~--~~~~~~~~~-~-~~~~~~~~~~--------~~~~-----~~~~~~~ 65 (268)
+||++|+.+.. +..|.+-|+.+.+....+.. ...++.+.+ . |....+.+++ ++.. ...+.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 37777666665 45699999999998775553 345777776 3 5555555442 1110 1111222
Q ss_pred eeeeeeCCCCCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-----------------------------------
Q 024407 66 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA----------------------------------- 110 (268)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----------------------------------- 110 (268)
+.+. .+.+.+..+.-.. ....+.++|+|+++++.+.+.
T Consensus 179 vID~------~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 179 AVDA------DKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEET------TTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred EEEC------CCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 2221 2333444333111 234567899999988777553
Q ss_pred ---cEEEEECCC--Cce-eeecccccCcccceEEEEEcCCCCEEEEee-CCCcEEEEECCCcc------------eeeee
Q 024407 111 ---IVRIWDTET--GKL-LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE------------LIKTY 171 (268)
Q Consensus 111 ---~i~iwd~~~--~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~iwd~~~~~------------~~~~~ 171 (268)
.|.+.|.++ ++. +..+.. .....++.++|||.++++++ .+.+|.++|+++.+ .+...
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ipv----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred EECcEEEEeCcccCCceeEEEEec----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc
Confidence 366667666 333 222221 12345788999999877654 78899999999653 33444
Q ss_pred ecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCe--e----eeEeeehhhhhhhccccccccceEEEEECCCCCeE
Q 024407 172 VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK--F----EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF 245 (268)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~----~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 245 (268)
.......-++|+|++ ...++..-++ .+..||..... + .....++ ..++.-.+|...-..+.++|||++|
T Consensus 328 ~vG~gP~h~aF~~dG-~aY~t~~lds-qV~kwdi~~a~~~~~g~~~~~vi~k---idV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRG-NAYTSLFLDS-QVVKWNIEDAIRAYAGEKVDPIKDK---LDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp BCCSCEEEEEECTTS-EEEEEETTTT-EEEEEEHHHHHHHHHTCSCCCEEEE---EECSSCEEEEEETTTTSTTCCSSEE
T ss_pred CCCCCcceEEECCCC-eEEEEEecCC-cEEEEEhhHhhhhhcccccceeEEE---eecccccccceeccceEeCCCCCEE
Confidence 445567788999987 6555444333 34445533200 0 0000000 0011111443222334678999998
Q ss_pred EeeeC
Q 024407 246 SSGGE 250 (268)
Q Consensus 246 asgs~ 250 (268)
++...
T Consensus 403 ~~~Nk 407 (595)
T 1fwx_A 403 VCLSK 407 (595)
T ss_dssp EEEES
T ss_pred EEcCC
Confidence 87653
No 229
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.53 E-value=3.1e-05 Score=62.22 Aligned_cols=159 Identities=14% Similarity=0.079 Sum_probs=99.4
Q ss_pred EEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 024407 81 VLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 159 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~i 159 (268)
+..+..+........|+|+++ .+++...++.|..|+. +++. ..+. .+...+..++++++|..+++...++.|..
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~---~~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLL---DATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEE---ESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEe---CCCCccceeeECCCCCEEEEECCCCEEEE
Confidence 344555566778899999998 5567778899999998 4442 2221 13456788999999987666666688999
Q ss_pred EECCCcceeeeee---c---CCceeEEEEccCCCeEEEe----ecC------------CCceEEEeccCCCeeeeEeeeh
Q 024407 160 WDARTLELIKTYV---T---ERPVNAVTMSPLLDHVVLG----GGQ------------DASAVTTTDHRAGKFEAKFFDK 217 (268)
Q Consensus 160 wd~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~----~~~------------~~~~i~~~d~~~~~~~~~~~~~ 217 (268)
||.. ++. ..+. . ...++.+.+.+++. ++++ +.. ....+..+|...+.+...
T Consensus 112 ~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~---- 184 (305)
T 3dr2_A 112 SDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM---- 184 (305)
T ss_dssp ECTT-SCE-EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE----
T ss_pred ECCC-CCE-EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE----
Confidence 9986 442 2221 1 12356688888765 4442 110 123345555443332211
Q ss_pred hhhhhhccccccccceEEEEECCCCCeEEeeeCC------CeEEEEeeCC
Q 024407 218 ILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED------GYVRLHHFDP 261 (268)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~D------g~i~i~~~~~ 261 (268)
. .....+.++|+||++.|..+... +.|++|.++.
T Consensus 185 ---------~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 185 ---------A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp ---------E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred ---------e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 1 12345789999999977666554 6788887764
No 230
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.49 E-value=4.7e-05 Score=64.19 Aligned_cols=192 Identities=8% Similarity=-0.033 Sum_probs=115.0
Q ss_pred CCCCCCEEEEeec--CCcEEEeecCCCcEEEEEecCCC--------ceeeeeecCCeEEEEEcCCCcccccceEeeeeee
Q 024407 2 FQANSMTLITGSA--DQTAKLWNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR 71 (268)
Q Consensus 2 fs~d~~~l~s~s~--D~tv~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (268)
||||++.|+.+.. +++|.+.|+.+++.+..+..... -..+.+.+++.++.+... ...... ...
T Consensus 184 ~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~~------~~~ 256 (426)
T 3c75_H 184 LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFA-DGETKV------TNT 256 (426)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECC-TTCCEE------EEC
T ss_pred EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECC-CCcEEE------Eee
Confidence 7999999999875 57999999999998887764321 111222233333222221 000000 000
Q ss_pred CCCCCCCceEEEEecCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--eecccc--c----C-cccceEEEEE
Q 024407 72 DPADQGGESVLILKGPQGRI-NRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDKE--T----G-HKKTITSLAK 141 (268)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~--~----~-h~~~v~~v~~ 141 (268)
..+.-...++ ..+.+.++++.++.....+.+.+.|+..+... ...... . + .+.....+++
T Consensus 257 ----------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~ 326 (426)
T 3c75_H 257 ----------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAY 326 (426)
T ss_dssp ----------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEE
T ss_pred ----------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEE
Confidence 0011111111 12467888888777778899999998764321 111000 0 0 1122223688
Q ss_pred cCCCCEEEEeeC----------CCcEEEEECCCcceeeeeecCCceeEEEEccCCC-eEEEeecCCCceEEEeccCCCee
Q 024407 142 AADGSHFLTGSL----------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAGKF 210 (268)
Q Consensus 142 s~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~ 210 (268)
++++..+.++.. +++|.++|+++.+.+.++........+.++|++. .++++. .....+...|..++..
T Consensus 327 s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n-~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 327 HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALS-AGTQTLHIYDAATGEE 405 (426)
T ss_dssp EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE-TTTTEEEEEETTTCCE
T ss_pred cCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEc-CCCCeEEEEECCCCCE
Confidence 999887776542 4579999999999999987777788999999988 454443 3345567777766654
Q ss_pred e
Q 024407 211 E 211 (268)
Q Consensus 211 ~ 211 (268)
.
T Consensus 406 v 406 (426)
T 3c75_H 406 L 406 (426)
T ss_dssp E
T ss_pred E
Confidence 3
No 231
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=6.4e-05 Score=58.11 Aligned_cols=176 Identities=13% Similarity=0.102 Sum_probs=107.6
Q ss_pred CCCCCCEEEEeecCC--cEEEeecCCCcEEEEEecCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~s~s~D~--tv~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|++ +.+..|.+.+| +|+..|+++++.+..+..+......-..+ ++++..+... .+...+.+ ..+.
T Consensus 28 ~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~-----~~~v~v~D------~~tl 95 (243)
T 3mbr_X 28 YLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR-----NHEGFVYD------LATL 95 (243)
T ss_dssp EET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEE------TTTT
T ss_pred EEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee-----CCEEEEEE------CCcC
Confidence 343 45566666654 99999999999999888766654433222 3443333210 11111111 1344
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccccc-Ccc-cceEEEEEcCCCCEEEEeeCCCc
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET-GHK-KTITSLAKAADGSHFLTGSLDKS 156 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~-~~v~~v~~s~~~~~l~s~~~d~~ 156 (268)
+.+..++-.. .-..+ .++++.|+.+..++.|.++|..+.+....+.... +.+ ..++.+.+. +|...+..-.+..
T Consensus 96 ~~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 96 TPRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred cEEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe
Confidence 5555555322 11233 3567777666678999999999988776654321 111 234555554 6666655556889
Q ss_pred EEEEECCCcceeeeeecC--------------CceeEEEEccCCCeEEEee
Q 024407 157 AKLWDARTLELIKTYVTE--------------RPVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 193 (268)
|.+.|+++++++..+... ...+.++++|..+.+++++
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 999999999988876421 2458899999877777654
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.47 E-value=0.00024 Score=58.62 Aligned_cols=152 Identities=7% Similarity=0.038 Sum_probs=85.7
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCC----------CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDS----------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
++..++.++.++.|..+|.++++.++...... .+.......++.+.+...++. +...+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~------l~a~d------ 119 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQ------VYALN------ 119 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSE------EEEEE------
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCE------EEEEE------
Confidence 45678889999999999999999988877532 121111122344444332211 11111
Q ss_pred CCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcc--cceEEEEEcCCCCEEEEee
Q 024407 75 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGS 152 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~l~s~~ 152 (268)
..+++.+............... .+..++.++.++.|..+|.++++.+.......... ........ .+..++.++
T Consensus 120 ~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~ 195 (376)
T 3q7m_A 120 TSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGG 195 (376)
T ss_dssp TTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECC
T ss_pred CCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEc
Confidence 1233444333322111111111 14577888899999999999998776543211000 00011111 145677888
Q ss_pred CCCcEEEEECCCcceeeeee
Q 024407 153 LDKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 153 ~d~~i~iwd~~~~~~~~~~~ 172 (268)
.++.|..+|+++++.+-...
T Consensus 196 ~~g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 196 DNGRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp TTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEe
Confidence 89999999999988766554
No 233
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.47 E-value=1.9e-05 Score=66.40 Aligned_cols=159 Identities=11% Similarity=0.036 Sum_probs=101.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC--cEEEEECCCcc
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDARTLE 166 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~--~i~iwd~~~~~ 166 (268)
.....++|+|+++.+++...++.|+.||+.+++....... . .... +++++++..|+++..++ .|.++|.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---F-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---C-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---C-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 3567899999999778878889999999988765433321 1 2223 88999999988888766 78889887654
Q ss_pred eeeee----e-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccccc--ceEEEEEC
Q 024407 167 LIKTY----V-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG--PINALAFN 239 (268)
Q Consensus 167 ~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s 239 (268)
....+ . ....+..++++|....++++.. ...+..+|...+.... +... ...++.. +...++|+
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~--~~~I~~~d~~~~~~~~--~~~~------~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDS--NKNFGRFNVKTQEVTL--IKQL------ELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEEECT--TCEEEEEETTTCCEEE--EEEC------CCCSCCCCSSCCEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC--CCcEEEEECCCCCEEE--Eecc------cccCCCCCCccccEEEe
Confidence 33333 1 2345677888886566666432 3456666655443211 1000 0011111 12389999
Q ss_pred CC-CCeEEeeeCCCeEEEEeeCCC
Q 024407 240 PD-GKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 240 p~-~~~lasgs~Dg~i~i~~~~~~ 262 (268)
|+ +..+++-..++.|+.|..+++
T Consensus 276 p~~g~lyv~d~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 276 FVDSNFYMSDQNLSSVYKITPDGE 299 (409)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC
T ss_pred CCCCEEEEEeCCCCEEEEEecCCC
Confidence 95 666777777888888877654
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.44 E-value=0.00011 Score=61.80 Aligned_cols=195 Identities=14% Similarity=0.081 Sum_probs=107.5
Q ss_pred CCCCCEEEEeecC------CcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCC
Q 024407 3 QANSMTLITGSAD------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 76 (268)
Q Consensus 3 s~d~~~l~s~s~D------~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (268)
+||+ +++|+..+ +.|-+.|.++++.+..+......
T Consensus 146 ~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~-------------------------------------- 186 (462)
T 2ece_A 146 GPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGD-------------------------------------- 186 (462)
T ss_dssp CSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTT--------------------------------------
T ss_pred CCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCC--------------------------------------
Confidence 5788 77777777 67888888887776655422110
Q ss_pred CCceEEEEecCCCCeEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCceeeecccccCcccceE
Q 024407 77 GGESVLILKGPQGRINRAVWGPLNRTIISAG-------------------EDAIVRIWDTETGKLLKESDKETGHKKTIT 137 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 137 (268)
..--+++.|+|+++.+++.. ...+|.+||+.+++.+..+..... .....
T Consensus 187 -----------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~-g~~P~ 254 (462)
T 2ece_A 187 -----------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE-NRMAL 254 (462)
T ss_dssp -----------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT-EEEEE
T ss_pred -----------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC-CCccc
Confidence 01112356677777776663 478999999999877666543211 12334
Q ss_pred EEEE--cCCCCEEEEee------CCCcEEEEECCCcce--eeee--ec-----------------CCceeEEEEccCCCe
Q 024407 138 SLAK--AADGSHFLTGS------LDKSAKLWDARTLEL--IKTY--VT-----------------ERPVNAVTMSPLLDH 188 (268)
Q Consensus 138 ~v~~--s~~~~~l~s~~------~d~~i~iwd~~~~~~--~~~~--~~-----------------~~~~~~~~~~~~~~~ 188 (268)
.+.| +|++.++..++ .+++|.+|....++. ++.+ .. ......+.++++++.
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrf 334 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKF 334 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCE
T ss_pred eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCE
Confidence 4545 99999876655 566887655433211 1110 00 133567889999887
Q ss_pred EEEeecCCCceEEEeccC---CCeeeeEeeehhhhhhhcccccc--ccceEEEEECCCCCeEEeee
Q 024407 189 VVLGGGQDASAVTTTDHR---AGKFEAKFFDKILQEEIGGVKGH--FGPINALAFNPDGKSFSSGG 249 (268)
Q Consensus 189 ~~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~lasgs 249 (268)
+.++.-.. ..+...|.. ...........-........++. ...-..++++|||++|..+.
T Consensus 335 LYVSnrg~-d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 335 LYLSLWGI-GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEETTT-TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEeCCC-CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 77654333 345555542 11211111100000000000000 01135689999999988777
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.40 E-value=9.7e-05 Score=61.11 Aligned_cols=232 Identities=10% Similarity=-0.051 Sum_probs=126.6
Q ss_pred CEEEEeecCC----cEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCC-----cccccceEeeeeeeCCCCCC
Q 024407 7 MTLITGSADQ----TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF-----MELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 7 ~~l~s~s~D~----tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 77 (268)
..+++...+. +|.+.|..+++.+..+...... .+.++|+.+.+.+++... ......+.+++. .+
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~------~T 105 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP------VT 105 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT------TT
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEEC------CC
Confidence 3455555555 8889999999999988865555 799999877666654210 011223333332 34
Q ss_pred CceEEEEecC-------CCCeEEEEEcCCCCEEEEEeC--CCcEEE--EECCCCceeeecccccC-c-------------
Q 024407 78 GESVLILKGP-------QGRINRAVWGPLNRTIISAGE--DAIVRI--WDTETGKLLKESDKETG-H------------- 132 (268)
Q Consensus 78 ~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~-h------------- 132 (268)
.+.+..++-+ ......+.++|||++++.+.. ++.+.+ +|+.+ +..+....+ |
T Consensus 106 ~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~ 182 (368)
T 1mda_H 106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGS 182 (368)
T ss_dssp CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCC
T ss_pred CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEc
Confidence 5556665432 123567899999999888764 467888 88865 121110000 0
Q ss_pred -ccceEEEEE--------------------------cCCCCEEEEeeCCCcEEEEECCCcc--eeeeeec----------
Q 024407 133 -KKTITSLAK--------------------------AADGSHFLTGSLDKSAKLWDARTLE--LIKTYVT---------- 173 (268)
Q Consensus 133 -~~~v~~v~~--------------------------s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~---------- 173 (268)
...+..+.. .+++..++..+. +.+.+.|+.+.. .+..+..
T Consensus 183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~ 261 (368)
T 1mda_H 183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF 261 (368)
T ss_dssp CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred CCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc
Confidence 000000110 223333343334 667777775421 2222211
Q ss_pred -CCceeEEEEccCCCeEEEeec-C-C-----CceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCe-
Q 024407 174 -ERPVNAVTMSPLLDHVVLGGG-Q-D-----ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS- 244 (268)
Q Consensus 174 -~~~~~~~~~~~~~~~~~~~~~-~-~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~- 244 (268)
+.....+.++|+++.++++.. . . ...+...|..+.....+ +... .....++|+|||+.
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~------------i~vg-~~p~gi~~s~Dg~~l 328 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP------------ISNG-HDSDAIIAAQDGASD 328 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC------------CEEE-EEECEEEECCSSSCE
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE------------EECC-CCcceEEECCCCCEE
Confidence 011122678888777776533 1 1 11223555554443221 2111 14678999999974
Q ss_pred EEeee-CCCeEEEEeeCCC
Q 024407 245 FSSGG-EDGYVRLHHFDPD 262 (268)
Q Consensus 245 lasgs-~Dg~i~i~~~~~~ 262 (268)
+++.. .++.|.+++....
T Consensus 329 ~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 329 NYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EEEEETTTTEEEEEESSSC
T ss_pred EEEccCCCCeEEEEECCCC
Confidence 56666 5999999988753
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.40 E-value=0.00028 Score=63.26 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=75.3
Q ss_pred EcCCC---CEEEEEeCCCcEEEEECCCCceeeeccccc--------Ccccce------------------------EEEE
Q 024407 96 WGPLN---RTIISAGEDAIVRIWDTETGKLLKESDKET--------GHKKTI------------------------TSLA 140 (268)
Q Consensus 96 ~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~h~~~v------------------------~~v~ 140 (268)
...+| +.++.++.+|.++++|.++++.+....... ....++ ..++
T Consensus 320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a 399 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMS 399 (677)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCE
T ss_pred cccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCce
Confidence 33467 578899999999999999998875443110 000000 1467
Q ss_pred EcCCCCEEEEeeC-------------------------------------------CCcEEEEECCCcceeeeeecCCce
Q 024407 141 KAADGSHFLTGSL-------------------------------------------DKSAKLWDARTLELIKTYVTERPV 177 (268)
Q Consensus 141 ~s~~~~~l~s~~~-------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~ 177 (268)
++|+...+++... .+.|..||+++++.+-++....+.
T Consensus 400 ~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~ 479 (677)
T 1kb0_A 400 FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW 479 (677)
T ss_dssp EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred EcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCC
Confidence 8888777776533 278999999999887776655444
Q ss_pred eEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEe
Q 024407 178 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF 214 (268)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 214 (268)
....+...+..++++ .....+..+|.+++.....+
T Consensus 480 ~~g~~~~~g~~v~~g--~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 480 NGGTLTTAGNVVFQG--TADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp CCCEEEETTTEEEEE--CTTSEEEEEETTTCCEEEEE
T ss_pred cCcceEeCCCEEEEE--CCCCcEEEEECCCCceeeee
Confidence 443444445555554 33456778888887765443
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.36 E-value=0.00043 Score=61.98 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=91.5
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCc--eeeeee---cCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA--RSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
++..++.++.|+.|..+|.++|+.++.+....+. ..+... .++.+++............+...+ ..+++
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D------~~tG~ 189 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYD------ADTGK 189 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEE------TTTCC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEE------CCCCc
Confidence 3557888999999999999999999988753211 111111 133333221110000011111111 12333
Q ss_pred eEEEEec-------------------------------CCCCeEEEEEcCCCCEEEEEeCCC------------------
Q 024407 80 SVLILKG-------------------------------PQGRINRAVWGPLNRTIISAGEDA------------------ 110 (268)
Q Consensus 80 ~~~~~~~-------------------------------~~~~v~~~~~~~~~~~l~s~~~dg------------------ 110 (268)
.+..+.. +......+.++|..+.++.++.++
T Consensus 190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~ 269 (668)
T 1kv9_A 190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYL 269 (668)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence 3333321 011112467888888888887766
Q ss_pred -cEEEEECCCCceeeecccccCcc-------cceEEEEEcCCCC---EEEEeeCCCcEEEEECCCcceeee
Q 024407 111 -IVRIWDTETGKLLKESDKETGHK-------KTITSLAKAADGS---HFLTGSLDKSAKLWDARTLELIKT 170 (268)
Q Consensus 111 -~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~v~~s~~~~---~l~s~~~d~~i~iwd~~~~~~~~~ 170 (268)
.|.-+|.++++.+...... .|. .+..-..+..++. .++.++.+|.+.++|.++++.+..
T Consensus 270 ~~v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 270 SSILAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp TEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred eeEEEEcCCCCceeeEeecC-CCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence 3999999999987655421 122 2333333334665 688999999999999999987743
No 238
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.30 E-value=0.00099 Score=54.93 Aligned_cols=225 Identities=10% Similarity=0.082 Sum_probs=117.2
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
++..++.++.|+.|..+|.++++..+.......+.......++.+.+...++. +...+ ..+++.+...
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~------l~~~d------~~tG~~~W~~ 169 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQ------LQALN------EADGAVKWTV 169 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSE------EEEEE------TTTCCEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCe------EEEEE------CCCCcEEEEE
Confidence 34568889999999999999999998887654443222223444443332221 11111 1223333333
Q ss_pred ecCCCCe-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcc-c---ceEEEEEcC--CCCEEEEeeC
Q 024407 85 KGPQGRI-----NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-K---TITSLAKAA--DGSHFLTGSL 153 (268)
Q Consensus 85 ~~~~~~v-----~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~---~v~~v~~s~--~~~~l~s~~~ 153 (268)
....... ..... .+..++.++.++.+..+|..+++............ . .+..+...| .+..++.++.
T Consensus 170 ~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~ 247 (376)
T 3q7m_A 170 NLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY 247 (376)
T ss_dssp ECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT
T ss_pred eCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec
Confidence 2211100 11111 14577788889999999999998765443211000 0 000000011 2456777888
Q ss_pred CCcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccce
Q 024407 154 DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 233 (268)
Q Consensus 154 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 233 (268)
++.+..+|+++++.+-...... ....... ++.++++... ..+...|..++...... ... . ...+
T Consensus 248 ~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~--~~~l~~~~~~--g~l~~~d~~tG~~~w~~---~~~------~--~~~~ 311 (376)
T 3q7m_A 248 NGNLTALDLRSGQIMWKRELGS-VNDFIVD--GNRIYLVDQN--DRVMALTIDGGVTLWTQ---SDL------L--HRLL 311 (376)
T ss_dssp TSCEEEEETTTCCEEEEECCCC-EEEEEEE--TTEEEEEETT--CCEEEEETTTCCEEEEE---CTT------T--TSCC
T ss_pred CcEEEEEECCCCcEEeeccCCC-CCCceEE--CCEEEEEcCC--CeEEEEECCCCcEEEee---ccc------C--CCcc
Confidence 9999999999988765543322 2222222 4455555432 24566677666543221 100 0 0111
Q ss_pred EEEEECCCCCeEEeeeCCCeEEEEeeCC
Q 024407 234 NALAFNPDGKSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 234 ~~~~~sp~~~~lasgs~Dg~i~i~~~~~ 261 (268)
..... .+..|..++.+|.+.+++...
T Consensus 312 ~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 312 TSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp CCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred cCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 11222 245667778888887776554
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.29 E-value=0.00016 Score=58.28 Aligned_cols=218 Identities=14% Similarity=0.087 Sum_probs=118.1
Q ss_pred CCEEEEeecCCcEEEeecCCCcEEEEEecCCC-ceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 6 SMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 6 ~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
+..|..++.++.+..+|.+ ++.......... +..+...+++.+.+...+.. +...+ .. ++....+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~------l~~~d------~~-g~~~~~~ 172 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNY------LYAIN------PD-GTEKWRF 172 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSE------EEEEC------TT-SCEEEEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCE------EEEEC------CC-CCEeEEE
Confidence 3457778889999999988 777776664333 33344443444444332111 11110 11 3344444
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCC
Q 024407 85 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 85 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~ 164 (268)
......+.++...+++...+ ++ +.|..+| .+++....... ....+.++...+++. +..++.++.|..+|. +
T Consensus 173 ~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~---~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~ 243 (330)
T 3hxj_A 173 KTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA---GYWTVTRPAISEDGT-IYVTSLDGHLYAINP-D 243 (330)
T ss_dssp ECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC---SSCCCSCCEECTTSC-EEEEETTTEEEEECT-T
T ss_pred ecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc---CCcceeceEECCCCe-EEEEcCCCeEEEECC-C
Confidence 44445566677777777554 44 8899999 66665544331 234566677777764 556667788888885 4
Q ss_pred cceeeeeecCCc-eeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC
Q 024407 165 LELIKTYVTERP-VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 243 (268)
Q Consensus 165 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 243 (268)
++.+..+..... ...+...+. ..+.++...+ -+...|. .+.....+ . .....+.++...++|+
T Consensus 244 g~~~~~~~~~~~~~~~~~~~~~-g~l~v~t~~g--gl~~~d~-~g~~~~~~-~-----------~~~~~~~~~~~d~~g~ 307 (330)
T 3hxj_A 244 GTEKWRFKTGKRIESSPVIGNT-DTIYFGSYDG--HLYAINP-DGTEKWNF-E-----------TGSWIIATPVIDENGT 307 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTT-SCEEEECTTC--EEEEECT-TSCEEEEE-E-----------CSSCCCSCCEECTTCC
T ss_pred CCEeEEeeCCCCccccceEcCC-CeEEEecCCC--CEEEECC-CCcEEEEE-E-----------cCCccccceEEcCCCE
Confidence 444444433221 222333332 3455543322 2444454 33322111 0 1123466777778887
Q ss_pred eEEeeeCCCeEEEEeeCCCc
Q 024407 244 SFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 244 ~lasgs~Dg~i~i~~~~~~~ 263 (268)
.++ |+.+|.+++...+.+.
T Consensus 308 l~~-gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 308 IYF-GTRNGKFYALFNLEHH 326 (330)
T ss_dssp EEE-ECTTSCEEEEEC----
T ss_pred EEE-EcCCCeEEEEeccccc
Confidence 655 7889999998776554
No 240
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.27 E-value=2.2e-07 Score=77.23 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=70.9
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCC--cee-eeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFNFDSP--ARS-VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
.+++..+++++.|++|+.||.++++.++.+....+ +.. ..+..++.+.+.. .+..+..++ ..+++
T Consensus 46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~------~dg~v~a~D------~~tG~ 113 (369)
T 2hz6_A 46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGK------KQDIWYVID------LLTGE 113 (369)
T ss_dssp ----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCE------EEEEEEEEC------CC---
T ss_pred EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEe------CCCEEEEEE------CCCCc
Confidence 45777888889999999999999987766643211 000 0000111111100 011111111 22344
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCC---CEEEEeeCCCc
Q 024407 80 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG---SHFLTGSLDKS 156 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~---~~l~s~~~d~~ 156 (268)
.+..+..+. ...++|+++.+++++.|+.|+.||.++++.+...... .. ...++..+. ..+++++.|+.
T Consensus 114 ~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~~----~~~~~~~~~~~~~~v~~~~~dg~ 184 (369)
T 2hz6_A 114 KQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF-DY----AASLPEDDVDYKMSHFVSNGDGL 184 (369)
T ss_dssp -----------------------EEEEEEEEEEECCCSSSSSCCCEEEEE-EE----CCBCCCCCTTCCCCEEEEETSCE
T ss_pred EEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-cc----cCccccCCccccceEEEECCCCE
Confidence 444443332 1345678889999999999999999999876544311 11 112223322 46777889999
Q ss_pred EEEEECCCcceeeeeecCCce
Q 024407 157 AKLWDARTLELIKTYVTERPV 177 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~~~~ 177 (268)
|..||.++++.+-++....++
T Consensus 185 v~a~d~~tG~~~W~~~~~~pv 205 (369)
T 2hz6_A 185 VVTVDSESGDVLWIQNYASPV 205 (369)
T ss_dssp EEEECTTTCCEEEEEECSSCE
T ss_pred EEEEECCCCcEEEEecCCCce
Confidence 999999999877665444333
No 241
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.24 E-value=0.00095 Score=58.61 Aligned_cols=78 Identities=12% Similarity=0.050 Sum_probs=50.0
Q ss_pred EEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeeeccccc-------CcccceEEEEEcCCCC---E
Q 024407 94 AVWGPLNRTIISAGED----------------AIVRIWDTETGKLLKESDKET-------GHKKTITSLAKAADGS---H 147 (268)
Q Consensus 94 ~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~-------~h~~~v~~v~~s~~~~---~ 147 (268)
+.+.+....++.+..+ +.|.-+|.++++.+....... ....++. +....+|. .
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL 318 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence 4556666666655432 359999999998876543210 1123332 23334674 5
Q ss_pred EEEeeCCCcEEEEECCCcceeeeee
Q 024407 148 FLTGSLDKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 148 l~s~~~d~~i~iwd~~~~~~~~~~~ 172 (268)
++.++.+|.+..+|.++++.+....
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEeCCCcEEEEEECCCCCEEeeec
Confidence 6778899999999999998766543
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.15 E-value=0.0011 Score=52.05 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEE-EeeCCCcEEEEECCCcce
Q 024407 91 INRAVWGPLNRTIISAGE--DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 91 v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~iwd~~~~~~ 167 (268)
...+.|+|++..+++.+. ++.|+++|+.+++....+... .+ .....+++. +..|. +.-.++.+.++|..+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-DS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-TT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-CC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 567899998755555553 689999999999988765431 12 122344444 44554 555688999999999998
Q ss_pred eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEe
Q 024407 168 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 247 (268)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~las 247 (268)
+.++..+ ......++++++.++++.+ ...+...|..+.......- +..........+.+.|. +++.++.
T Consensus 99 ~~~i~~g-~~~g~glt~Dg~~l~vs~g--s~~l~viD~~t~~v~~~I~-------Vg~~~~p~~~~nele~~-dg~lyvn 167 (266)
T 2iwa_A 99 IKNFTHQ-MKDGWGLATDGKILYGSDG--TSILYEIDPHTFKLIKKHN-------VKYNGHRVIRLNELEYI-NGEVWAN 167 (266)
T ss_dssp EEEEECC-SSSCCEEEECSSSEEEECS--SSEEEEECTTTCCEEEEEE-------CEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EEEEECC-CCCeEEEEECCCEEEEECC--CCeEEEEECCCCcEEEEEE-------ECCCCcccccceeEEEE-CCEEEEe
Confidence 8887554 1223445566677776543 4466777766544433221 00000111236678887 6766666
Q ss_pred eeCCCeEEEEeeC
Q 024407 248 GGEDGYVRLHHFD 260 (268)
Q Consensus 248 gs~Dg~i~i~~~~ 260 (268)
...++.|.+-+..
T Consensus 168 ~~~~~~V~vID~~ 180 (266)
T 2iwa_A 168 IWQTDCIARISAK 180 (266)
T ss_dssp ETTSSEEEEEETT
T ss_pred cCCCCeEEEEECC
Confidence 6566777665554
No 243
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.10 E-value=0.00025 Score=63.69 Aligned_cols=76 Identities=17% Similarity=0.096 Sum_probs=52.7
Q ss_pred CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCc--eeEEEEccCC
Q 024407 109 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--VNAVTMSPLL 186 (268)
Q Consensus 109 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~ 186 (268)
+|.|+.||+.+++.+.+... ..++..-.+...+..++.++.|+.++.||.++++.+-++..... ..-+.+..++
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G 529 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG 529 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred ceeEEEEECCCCCeEeEccC----CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECC
Confidence 47899999999988766542 22233334455778888999999999999999999877754422 2234455555
Q ss_pred Ce
Q 024407 187 DH 188 (268)
Q Consensus 187 ~~ 188 (268)
..
T Consensus 530 ~q 531 (689)
T 1yiq_A 530 EQ 531 (689)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.09 E-value=0.00013 Score=63.47 Aligned_cols=186 Identities=12% Similarity=0.013 Sum_probs=114.2
Q ss_pred CCCCEEEEee------------------cCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcc------
Q 024407 4 ANSMTLITGS------------------ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME------ 59 (268)
Q Consensus 4 ~d~~~l~s~s------------------~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 59 (268)
|++++++.++ .++++.+.|.++.+....+........++++++++.+.+.+.....
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~ 224 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPE 224 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHH
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhh
Confidence 8888888884 4578999999999988888876667788888887777766532200
Q ss_pred ----cccceEeeeeeeC--------CC---------CCC--Cce-EEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEE
Q 024407 60 ----LNSAIHVKRIARD--------PA---------DQG--GES-VLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRI 114 (268)
Q Consensus 60 ----~~~~~~~~~~~~~--------~~---------~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~i 114 (268)
....+.+.+..+. .. ..+ ++. +..++.. ....++.++|||++++++ ..+++|.+
T Consensus 225 ~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsV 303 (595)
T 1fwx_A 225 MTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTV 303 (595)
T ss_dssp HTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEE
T ss_pred ccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEE
Confidence 0000111110000 00 000 111 2222211 234568899999987655 58899999
Q ss_pred EECCCCc------------eeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCC----------cceeeeee
Q 024407 115 WDTETGK------------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART----------LELIKTYV 172 (268)
Q Consensus 115 wd~~~~~------------~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~ 172 (268)
+|+.+.+ ....+. -......++|+++|...++...|++|..||+.. .+.+.++.
T Consensus 304 id~~~~~~~~~~~l~~~~~v~~~v~----vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid 379 (595)
T 1fwx_A 304 LDVTRFDAVFYENADPRSAVVAEPE----LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD 379 (595)
T ss_dssp EEGGGHHHHHHSCCCGGGGEEECCB----CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE
T ss_pred EECcccccccccccCcccceEEEcC----CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee
Confidence 9998643 122221 124567889999995556778899999999876 45666665
Q ss_pred cCCcee------EEEEccCCCeEEEeec
Q 024407 173 TERPVN------AVTMSPLLDHVVLGGG 194 (268)
Q Consensus 173 ~~~~~~------~~~~~~~~~~~~~~~~ 194 (268)
...... .+..+|+++++++...
T Consensus 380 V~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 380 VHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp CSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred cccccccceeccceEeCCCCCEEEEcCC
Confidence 444331 1234677777666543
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.08 E-value=0.0025 Score=51.34 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=124.2
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecC---------------------CCceeeeeec-CCeEEEEEcCCCcc
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFD---------------------SPARSVDFAV-GDKLAVITTDPFME 59 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~---------------------~~~~~~~~~~-~~~~~~~~~~~~~~ 59 (268)
|++++++++++..++.|..||..+++.. .+... ..+..+.+.+ ++.+.++.....
T Consensus 26 ~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~-- 102 (322)
T 2fp8_A 26 FDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYH-- 102 (322)
T ss_dssp CCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTE--
T ss_pred EcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCC--
Confidence 6788888899999999999998765443 23211 2355677775 556555433211
Q ss_pred cccceEeeeeeeCCCCCCCceEEEEe----c-CCCCeEEEEEcC-CCCEEEEEeC-----------------CCcEEEEE
Q 024407 60 LNSAIHVKRIARDPADQGGESVLILK----G-PQGRINRAVWGP-LNRTIISAGE-----------------DAIVRIWD 116 (268)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~v~~~~~~~-~~~~l~s~~~-----------------dg~i~iwd 116 (268)
+..+.. .++ .+..+. + .....+.+.+.| +|+..++-.. ++.|..||
T Consensus 103 ------i~~~d~----~~g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 103 ------LSVVGS----EGG-HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp ------EEEECT----TCE-ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred ------EEEEeC----CCC-EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 111110 111 111111 1 113467899999 8887666432 36788899
Q ss_pred CCCCceeeecccccCcccceEEEEEcCCCCEEEEe-eCCCcEEEEECCCcc--eeeeee-cCCceeEEEEccCCCeEEEe
Q 024407 117 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLE--LIKTYV-TERPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 117 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-~~d~~i~iwd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~ 192 (268)
..+++...... .-.....+++++++..|..+ ...+.|..|++.... ....+. .+. ...+...+.+. ++++
T Consensus 172 ~~~~~~~~~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va 245 (322)
T 2fp8_A 172 PSTKETTLLLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVS 245 (322)
T ss_dssp TTTTEEEEEEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEE
T ss_pred CCCCEEEEecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEE
Confidence 87665322111 11234578999999865544 667899999987421 111111 122 56677777764 4443
Q ss_pred ecC---------CCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 193 GGQ---------DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 193 ~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
... ....+...|.. +.....+ ....+. ....++++++ .+++.+++....+.|.+++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~-~~~~g~-------~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVI-PLPPPF-------AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEE-ECCTTT-------TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEE-ECCCCC-------ccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 322 12234444443 3322211 110000 0134556666 46777777777888988887754
No 246
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.01 E-value=0.0045 Score=54.55 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=51.2
Q ss_pred EEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeeecccccCc--------ccceEEEEEc-CCC---
Q 024407 94 AVWGPLNRTIISAGED----------------AIVRIWDTETGKLLKESDKETGH--------KKTITSLAKA-ADG--- 145 (268)
Q Consensus 94 ~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~h--------~~~v~~v~~s-~~~--- 145 (268)
..+.+....++.+..+ +.|.-+|.++++.+...+.. .| ..++. +... .+|
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~-~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT-PHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS-TTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC-CCccccccCCCccEE-EeccccCCcEE
Confidence 3555667777766654 47999999999887654321 22 12232 2222 466
Q ss_pred CEEEEeeCCCcEEEEECCCcceeeee
Q 024407 146 SHFLTGSLDKSAKLWDARTLELIKTY 171 (268)
Q Consensus 146 ~~l~s~~~d~~i~iwd~~~~~~~~~~ 171 (268)
..++.++.+|.+..+|.++++.+-..
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCcEEEEEECCCCCEeecc
Confidence 46777889999999999999876654
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.92 E-value=0.0044 Score=48.33 Aligned_cols=164 Identities=11% Similarity=0.178 Sum_probs=94.9
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC
Q 024407 76 QGGESVLILKGPQGRINRAVWGPLNRTIIS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
.+++.+..+.-.. ........++++.|.. ...++.+.+||..+.+.+.++... + ....+++|+..|+.+..+
T Consensus 73 ~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~-~-----eG~glt~dg~~L~~SdGs 145 (262)
T 3nol_A 73 ESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-G-----EGWGLTHNDQYLIMSDGT 145 (262)
T ss_dssp TTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS-S-----CCCCEEECSSCEEECCSS
T ss_pred CCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC-C-----CceEEecCCCEEEEECCC
Confidence 3455555544322 2222223344555544 456899999999999888776531 1 112334677777777778
Q ss_pred CcEEEEECCCcceeeeeecC------CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccc
Q 024407 155 KSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 228 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
++|.++|+.+.+.+.++... ..++.+.+. ++.++++.-. ...|..-|..++.+....--............
T Consensus 146 ~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~-~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~ 222 (262)
T 3nol_A 146 PVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQ-TNKIVRIDPETGKVTGIIDLNGILAEAGPLPS 222 (262)
T ss_dssp SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-SSEEEEECTTTCBEEEEEECTTGGGGSCSCCS
T ss_pred CeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEcc-CCeEEEEECCCCcEEEEEECCcCccccccccC
Confidence 89999999999888876532 223456665 3455554432 33567778888887554322111110000001
Q ss_pred cccceEEEEECCCCCeEEeee
Q 024407 229 HFGPINALAFNPDGKSFSSGG 249 (268)
Q Consensus 229 h~~~v~~~~~sp~~~~lasgs 249 (268)
-.+..+.|||+|+++.|...+
T Consensus 223 ~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 223 PIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp SCCCEEEEEEETTTTEEEEEE
T ss_pred cCCceEEEEEcCCCCEEEEEC
Confidence 123568899999876655444
No 248
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.91 E-value=0.0093 Score=52.45 Aligned_cols=61 Identities=10% Similarity=0.002 Sum_probs=41.8
Q ss_pred CcEEEEECCCCceeeecccccCc--------ccceEEEEEc-CCCC---EEEEeeCCCcEEEEECCCcceeeeee
Q 024407 110 AIVRIWDTETGKLLKESDKETGH--------KKTITSLAKA-ADGS---HFLTGSLDKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 110 g~i~iwd~~~~~~~~~~~~~~~h--------~~~v~~v~~s-~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~ 172 (268)
+.|.-+|.++++.+...+.. .| ..++. +... .+|+ .++.++.+|.+..+|.++++.+..+.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~-~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHT-PNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp SEEEEECTTTCCEEEEEESS-TTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCCEEEEEeCC-CCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 58999999999887654321 12 12332 2222 4664 67889999999999999998776543
No 249
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.89 E-value=0.0011 Score=60.14 Aligned_cols=73 Identities=22% Similarity=0.164 Sum_probs=46.3
Q ss_pred EEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC---CCcEEEEECCC
Q 024407 93 RAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDART 164 (268)
Q Consensus 93 ~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~---d~~i~iwd~~~ 164 (268)
.+.|+|||+.|+....| ..|..+++.+++....+.-..........+.+++|+.+|+..+. ...|.++|+.+
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 35789999887766654 35778888775421111000112234667899999998876552 34688889886
Q ss_pred c
Q 024407 165 L 165 (268)
Q Consensus 165 ~ 165 (268)
+
T Consensus 305 ~ 305 (751)
T 2xe4_A 305 G 305 (751)
T ss_dssp C
T ss_pred C
Confidence 5
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.70 E-value=0.00034 Score=56.30 Aligned_cols=134 Identities=15% Similarity=0.149 Sum_probs=75.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecC-Ccee
Q 024407 100 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVN 178 (268)
Q Consensus 100 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~ 178 (268)
+..+..++.++.|..+|.. ++....... ....+.++...+++. +..++.++.|..+|.. ++.+..+... ..+.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~---~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~ 180 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKT---KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITS 180 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEEC---SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcC---CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCcee
Confidence 5667778889999999988 665544331 223344555566665 6667778999999998 6665544332 2233
Q ss_pred EEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEe
Q 024407 179 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 258 (268)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~ 258 (268)
.+...+. ..++++. ..+..+| ..+...... ......+.++...++|..++ |+.++.+..++
T Consensus 181 ~~~~d~~-g~l~v~t----~~l~~~d-~~g~~~~~~------------~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~ 241 (330)
T 3hxj_A 181 AASIGKD-GTIYFGS----DKVYAIN-PDGTEKWNF------------YAGYWTVTRPAISEDGTIYV-TSLDGHLYAIN 241 (330)
T ss_dssp CCEECTT-CCEEEES----SSEEEEC-TTSCEEEEE------------CCSSCCCSCCEECTTSCEEE-EETTTEEEEEC
T ss_pred eeEEcCC-CEEEEEe----CEEEEEC-CCCcEEEEE------------ccCCcceeceEECCCCeEEE-EcCCCeEEEEC
Confidence 4444443 3444443 2344555 333322111 01123466677777766554 44555555543
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.55 E-value=0.018 Score=44.97 Aligned_cols=143 Identities=12% Similarity=0.139 Sum_probs=87.6
Q ss_pred CCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCC-
Q 024407 98 PLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER- 175 (268)
Q Consensus 98 ~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~- 175 (268)
++++.| +....++.+.+||..+.+.+.++.. .+ .-+.+ ++|+..|+.+..+++|.++|+.+.+.+.++....
T Consensus 103 ~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~-~~---eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~ 176 (268)
T 3nok_A 103 SDGERLYQLTWTEGLLFTWSGMPPQRERTTRY-SG---EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR 176 (268)
T ss_dssp ECSSCEEEEESSSCEEEEEETTTTEEEEEEEC-SS---CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred EeCCEEEEEEccCCEEEEEECCcCcEEEEEeC-CC---ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC
Confidence 344444 4556889999999999988877753 11 12233 3567888777779999999999998888765321
Q ss_pred -----ceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcc-ccccccceEEEEECCCC-CeEEee
Q 024407 176 -----PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALAFNPDG-KSFSSG 248 (268)
Q Consensus 176 -----~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~-~~lasg 248 (268)
.++.+.+. ++.++++.-. ...|..-|..++.+...+--......... ...-.+..+.|||+|++ ++++||
T Consensus 177 g~~v~~lNeLe~~--dG~lyanvw~-s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 177 GQPVELINELECA--NGVIYANIWH-SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEECCCEEEEEEE--TTEEEEEETT-CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CcccccccccEEe--CCEEEEEECC-CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 34566666 3455554432 33567778888876554322111111100 01112356889999976 456655
Q ss_pred e
Q 024407 249 G 249 (268)
Q Consensus 249 s 249 (268)
-
T Consensus 254 K 254 (268)
T 3nok_A 254 K 254 (268)
T ss_dssp T
T ss_pred C
Confidence 4
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.53 E-value=0.039 Score=48.34 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=67.5
Q ss_pred CCCC---EEEEEeCCCcEEEEECCCCceeeecccccC----------cccce--------------------------EE
Q 024407 98 PLNR---TIISAGEDAIVRIWDTETGKLLKESDKETG----------HKKTI--------------------------TS 138 (268)
Q Consensus 98 ~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------h~~~v--------------------------~~ 138 (268)
++|+ .++.++.+|.+..+|.++++.+........ ...++ ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 4664 567788999999999999987754321110 00011 23
Q ss_pred EEEcCCCCEEEEee-------------------------------------CCCcEEEEECCCcceeeeeecCCceeEEE
Q 024407 139 LAKAADGSHFLTGS-------------------------------------LDKSAKLWDARTLELIKTYVTERPVNAVT 181 (268)
Q Consensus 139 v~~s~~~~~l~s~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 181 (268)
++++|+...+...+ .++.|..||+++++.+-++..........
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~ 470 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT 470 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCcccee
Confidence 46677666665543 35789999999998776665433322211
Q ss_pred EccCCCeEEEeecCCCceEEEeccCCCeeeeE
Q 024407 182 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK 213 (268)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 213 (268)
....+..++++ . ....+..+|.+++....+
T Consensus 471 ~~t~gg~v~~g-~-~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 471 LYTKGGLVWYA-T-LDGYLKALDNKDGKELWN 500 (571)
T ss_dssp EEETTTEEEEE-C-TTSEEEEEETTTCCEEEE
T ss_pred EEECCCEEEEE-c-CCCeEEEEECCCCCEEEE
Confidence 22223445543 2 335677888887776443
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.53 E-value=0.0016 Score=57.29 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=44.8
Q ss_pred CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCC
Q 024407 108 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 175 (268)
Q Consensus 108 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 175 (268)
.+|.|.-||+.+++.+.+.... .++..-.....+..++.++.|+.++.||.++++.+-++....
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 4688999999999887655421 122111112246677789999999999999999988776543
No 254
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.52 E-value=0.0019 Score=58.59 Aligned_cols=112 Identities=9% Similarity=0.028 Sum_probs=69.1
Q ss_pred CeEEEEEc-CCCCEEEEE-eCCC----cEEEEECCCC-ceeeecccccCcccceEEEEEcCCCCEEEEeeCC-----CcE
Q 024407 90 RINRAVWG-PLNRTIISA-GEDA----IVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSA 157 (268)
Q Consensus 90 ~v~~~~~~-~~~~~l~s~-~~dg----~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~i 157 (268)
.+....|| |||++|+-+ ..+| .|+++|+.++ +.+... -......++|+||++.|+....| ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-----~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-----VSGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-----EEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-----ccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 56788999 999987644 3333 4999999988 632211 11123467899999888776655 258
Q ss_pred EEEECCCccee--eeee--cCCceeEEEEccCCCeEEEeecC-CCceEEEeccC
Q 024407 158 KLWDARTLELI--KTYV--TERPVNAVTMSPLLDHVVLGGGQ-DASAVTTTDHR 206 (268)
Q Consensus 158 ~iwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~ 206 (268)
..+++.+++.. ..+. .........++|++..+++.... ....++..|..
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 88888775422 1111 12234567899998887765432 22334444433
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.51 E-value=0.025 Score=45.44 Aligned_cols=157 Identities=6% Similarity=-0.064 Sum_probs=88.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccc--------cC--------cccceEEEEEcC-CCCEEEEe
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE--------TG--------HKKTITSLAKAA-DGSHFLTG 151 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~--------h~~~v~~v~~s~-~~~~l~s~ 151 (268)
....+++++++++.++++..++.|..||..+++........ .+ .......+++.+ ++. |+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 34566889999887888889999999998765432111000 00 113467889987 554 5555
Q ss_pred eCCCcEEEEECCCcceeeeee---c---CCceeEEEEcc-CCCeEEEeecC----------------CCceEEEeccCCC
Q 024407 152 SLDKSAKLWDARTLELIKTYV---T---ERPVNAVTMSP-LLDHVVLGGGQ----------------DASAVTTTDHRAG 208 (268)
Q Consensus 152 ~~d~~i~iwd~~~~~~~~~~~---~---~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~i~~~d~~~~ 208 (268)
...+.|..+|+.+++. ..+. . ....+.+...+ .+. +.++... ....+..+|...+
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 4445688899876532 2221 1 12356777887 654 4443211 1123344443333
Q ss_pred eeeeEeeehhhhhhhccccccccceEEEEECCCCCeE-EeeeCCCeEEEEeeCC
Q 024407 209 KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF-SSGGEDGYVRLHHFDP 261 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-asgs~Dg~i~i~~~~~ 261 (268)
..... .......+.++++|+++.| ++-..++.|.++.+++
T Consensus 176 ~~~~~-------------~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 176 ETTLL-------------LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEEE-------------EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred EEEEe-------------ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 22110 0011234579999999854 4445668888888775
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.50 E-value=0.0029 Score=56.63 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=46.2
Q ss_pred CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecC
Q 024407 108 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 174 (268)
Q Consensus 108 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 174 (268)
.+|.|.-||+.+++.+.+... ..++....+...+.+++.++.|+.++.||.++++.+..+...
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPY----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccceEEEEeCCCCcEEEEccC----CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 348899999999988765542 122222233446778888999999999999999988777544
No 257
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.40 E-value=0.0042 Score=55.42 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=19.9
Q ss_pred CCCCCEEEEeec-CCcEEEeecCCCc
Q 024407 3 QANSMTLITGSA-DQTAKLWNVETGA 27 (268)
Q Consensus 3 s~d~~~l~s~s~-D~tv~~wd~~~~~ 27 (268)
.+++++++.|+. +.++.+||+.+.+
T Consensus 251 ~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 251 DGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCCCCEEEeCCCCCCceEEecCcCCc
Confidence 468899999984 4689999998763
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.37 E-value=0.031 Score=49.29 Aligned_cols=154 Identities=17% Similarity=0.161 Sum_probs=84.4
Q ss_pred EEEEEeCCCcEEEEECCCCceeeecccccCcc--cceEE-EEEcCCCCEEEEee------CCCcEEEEECCCcceeeeee
Q 024407 102 TIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITS-LAKAADGSHFLTGS------LDKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 102 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~-v~~s~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~ 172 (268)
+|+.++.|+.+.-+|.++|+.+...... .+. ..+.+ -.+ .++ .++.++ .++.|.-+|.++++.+-++.
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~-~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENS-DIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCC-CCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 4788889999999999999887654321 110 01111 011 134 444444 48999999999998876654
Q ss_pred cCCce---------------------------------------eEEEEccCCCeEEEeecCC--------------Cce
Q 024407 173 TERPV---------------------------------------NAVTMSPLLDHVVLGGGQD--------------ASA 199 (268)
Q Consensus 173 ~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~--------------~~~ 199 (268)
...+. ...++.+....++++.+.. ...
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s 279 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce
Confidence 32211 1233445555666655443 135
Q ss_pred EEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC-CCC---CeEEeeeCCCeEEEEeeCC
Q 024407 200 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN-PDG---KSFSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 200 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~---~~lasgs~Dg~i~i~~~~~ 261 (268)
+...|..+|.....+... ....-.+.....++. +... .+| +.++.++.+|.+.+.+.+.
T Consensus 280 v~Ald~~TG~~~W~~q~~--~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t 342 (599)
T 1w6s_A 280 IFGRDADTGEAKFGYQKT--PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTD 342 (599)
T ss_dssp EEEEETTTCCEEEEEESS--TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred EEEEeCCCCceeeEeecC--CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCC
Confidence 777888888765443211 000000111112222 2222 466 4677788889887766543
No 259
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.29 E-value=0.033 Score=46.98 Aligned_cols=156 Identities=12% Similarity=0.157 Sum_probs=87.1
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-CC----cEEEEECC
Q 024407 90 RINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK----SAKLWDAR 163 (268)
Q Consensus 90 ~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~----~i~iwd~~ 163 (268)
....++++| ++..|+.+...+.|+.+|+..++...... .......+++++++..|+.+.. ++ .+.+++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 456788998 45666666555889999998765433221 2345778999999996655543 22 3333443
Q ss_pred Cccee--eeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC
Q 024407 164 TLELI--KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241 (268)
Q Consensus 164 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 241 (268)
.+... ..+........++++|....++++-.. ...+...+...+.... +. .... ...-..++|+|+
T Consensus 213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~-~~~V~~~~~~~~~~~~-~~---------~~~~-~~~P~gia~~pd 280 (430)
T 3tc9_A 213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETTP-LF---------TIQD-SGWEFHIQFHPS 280 (430)
T ss_dssp GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETT-TTEEEEEETTTTEEEE-EE---------ECSS-SSCCEEEEECTT
T ss_pred CCceeeeeeeccCCCceEEEEeCCCCEEEEEECC-CCEEEEEECCCCcEEE-EE---------EcCC-CCcceeEEEcCC
Confidence 33221 122222345667777744455544322 2334444443332211 10 0111 123568999999
Q ss_pred CCe-EEeeeCCCeEEEEeeCCC
Q 024407 242 GKS-FSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 242 ~~~-lasgs~Dg~i~i~~~~~~ 262 (268)
|++ +++-...+.|..+.++++
T Consensus 281 G~~lyv~d~~~~~I~~~~~d~~ 302 (430)
T 3tc9_A 281 GNYAYIVVVNQHYILRSDYDWK 302 (430)
T ss_dssp SSEEEEEETTTTEEEEEEEETT
T ss_pred CCEEEEEECCCCEEEEEeCCcc
Confidence 994 555556788888877753
No 260
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.28 E-value=0.041 Score=42.85 Aligned_cols=172 Identities=14% Similarity=0.134 Sum_probs=102.3
Q ss_pred EEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 024407 83 ILKGPQGRINRAVWGPLNRTIIS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd 161 (268)
.+.|-.+.+..++++|+++.|++ ...++.|...|+. ++..+.+.. .+. ...-.+++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-DFV-KDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-SSC-SSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-CCC-CChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 35566678999999998876654 6678889999998 777665532 121 3466788888887777766778898888
Q ss_pred CCCcce---eeeee-------cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEee-ehhhhhhhccccccc
Q 024407 162 ARTLEL---IKTYV-------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF-DKILQEEIGGVKGHF 230 (268)
Q Consensus 162 ~~~~~~---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~h~ 230 (268)
+..... +.... .......++++|.+..++++...+...+..++........... +...... .+.
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~-----~~~ 172 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ-----FTL 172 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT-----CCS
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc-----ccc
Confidence 765332 12221 1223478999998877887766655455555521111011111 1111100 112
Q ss_pred cceEEEEECCCCCe-EEeeeCCCeEEEEeeCCC
Q 024407 231 GPINALAFNPDGKS-FSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 231 ~~v~~~~~sp~~~~-lasgs~Dg~i~i~~~~~~ 262 (268)
....+++++|.... ++.......+-+++.+++
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE 205 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence 34678899886544 444445555555554443
No 261
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.08 E-value=0.067 Score=41.53 Aligned_cols=157 Identities=10% Similarity=0.046 Sum_probs=91.0
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCE-EEEeeCCCcEEEEECCCcce
Q 024407 90 RINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~~~d~~i~iwd~~~~~~ 167 (268)
.+..++++|+++.|+ +-...+.|..+|+.......... ........+++++++.. +++-...+.|.++++.....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~---~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~ 113 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR---QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC---TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE---CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence 356789999776554 55567899999997654322221 11235678999986554 45556678999999875332
Q ss_pred eeeee-cC-CceeEEEEccCCCeEEEeecC-CCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCe
Q 024407 168 IKTYV-TE-RPVNAVTMSPLLDHVVLGGGQ-DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244 (268)
Q Consensus 168 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 244 (268)
..+. .. .....++++|.++.++++... ....+...+... .....+.. ......+.++++|+++.
T Consensus 114 -~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~-----------~~~~~P~gia~d~~~~~ 180 (267)
T 1npe_A 114 -RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQ-----------DNLGLPNGLTFDAFSSQ 180 (267)
T ss_dssp -EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEEC-----------TTCSCEEEEEEETTTTE
T ss_pred -EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEE-----------CCCCCCcEEEEcCCCCE
Confidence 2222 12 356788899876666655432 123333322211 11111100 11124578999998765
Q ss_pred E-EeeeCCCeEEEEeeCCC
Q 024407 245 F-SSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 245 l-asgs~Dg~i~i~~~~~~ 262 (268)
| ++-...+.|.+++.++.
T Consensus 181 lyv~d~~~~~I~~~~~~g~ 199 (267)
T 1npe_A 181 LCWVDAGTHRAECLNPAQP 199 (267)
T ss_dssp EEEEETTTTEEEEEETTEE
T ss_pred EEEEECCCCEEEEEecCCC
Confidence 4 45555678888877653
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.03 E-value=0.072 Score=41.03 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=85.6
Q ss_pred CCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecC---
Q 024407 99 LNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--- 174 (268)
Q Consensus 99 ~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--- 174 (268)
.++.| .....++.+.+||..+.+.+..+.. .+ .-..+ .+++..|+.+..+++|.++|+.+.+.+.++...
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-~~---~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g 146 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRY-PG---EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG 146 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEEC-SS---CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeC-CC---CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC
Confidence 34544 4556889999999999988877653 11 22333 456777777777899999999999888776532
Q ss_pred ---CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccc-cccccceEEEEECCCCCe-EEeee
Q 024407 175 ---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINALAFNPDGKS-FSSGG 249 (268)
Q Consensus 175 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~-lasgs 249 (268)
..++.+.+. ++.+++..-. ...+..-|.+++.+....--.......... ..-.+..+.|||+|+++. ++||-
T Consensus 147 ~~~~~lNeLe~~--~G~lyanvw~-s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 147 RPLDNLNELEWV--NGELLANVWL-TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECCCEEEEEEE--TTEEEEEETT-TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred cccccceeeEEe--CCEEEEEECC-CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 234556655 3455554422 235667788888765443211110000000 011235688999997755 55554
No 263
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.02 E-value=0.12 Score=43.53 Aligned_cols=154 Identities=13% Similarity=0.020 Sum_probs=86.2
Q ss_pred CCC-CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCce
Q 024407 2 FQA-NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 80 (268)
Q Consensus 2 fs~-d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
|+| ++..|+.+...+.|+.+|++.+...........+..+++.+.+..+.++.......... +..+...... ..
T Consensus 144 vdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~--v~~~~~~g~~---~~ 218 (430)
T 3tc9_A 144 FDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPN--NYILTRESGF---KV 218 (430)
T ss_dssp EETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEE--EEEEEGGGTS---CS
T ss_pred ECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccce--EEEEeCCCce---ee
Confidence 455 34556666665889999988765444444344567888888766444433211111111 1111111100 10
Q ss_pred EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCE-EEEeeCCCcEE
Q 024407 81 VLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAK 158 (268)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~~~d~~i~ 158 (268)
...+.. ......++++| ++..+++-...+.|..+|...+....... .. -......++++|++++ +++-...++|.
T Consensus 219 ~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~-~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 219 ITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT-IQ-DSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp EEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE-CS-SSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE-cC-CCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 111221 22346678999 66666666678899999998764321111 11 1234568999999995 45556778899
Q ss_pred EEECC
Q 024407 159 LWDAR 163 (268)
Q Consensus 159 iwd~~ 163 (268)
.++..
T Consensus 296 ~~~~d 300 (430)
T 3tc9_A 296 RSDYD 300 (430)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 88765
No 264
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.96 E-value=0.11 Score=42.21 Aligned_cols=187 Identities=12% Similarity=0.183 Sum_probs=108.5
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCe-------EEEEEcCCCccc--ccceEeeeeeeCCCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK-------LAVITTDPFMEL--NSAIHVKRIARDPAD 75 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 75 (268)
...+++.....+.+.+||+ +|+.+..+.. ..+..+++.++-. +++++. . - ...+.+..+...
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~-R---~~~~n~l~vf~iDp~--- 109 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASN-R---SEGKNTIEIYAIDGK--- 109 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEE-C---STTCCEEEEEEECTT---
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeC-C---CCCCCeEEEEEECCC---
Confidence 4455777778889999999 8888887753 6678888877321 233322 1 1 223344433211
Q ss_pred CCCceEEEEec------C-CCCeEEEEE--cCCC-C-EEEEEeCCCcEEEEECC-------CCceeeecccccCcccceE
Q 024407 76 QGGESVLILKG------P-QGRINRAVW--GPLN-R-TIISAGEDAIVRIWDTE-------TGKLLKESDKETGHKKTIT 137 (268)
Q Consensus 76 ~~~~~~~~~~~------~-~~~v~~~~~--~~~~-~-~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~h~~~v~ 137 (268)
..++..+.. . ...+..+++ +|.+ + +++....+|.+..|++. +++.++.+.. .+++-
T Consensus 110 --~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----gsq~E 183 (355)
T 3amr_A 110 --NGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM----NSQTE 183 (355)
T ss_dssp --TCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----SSCEE
T ss_pred --CCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----CCCcc
Confidence 111222211 1 145566676 7754 4 67788899999999883 2344455542 35677
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEECC-----CcceeeeeecC---CceeEEEE--ccCCCeEEEeecCCCceEEEeccC
Q 024407 138 SLAKAADGSHFLTGSLDKSAKLWDAR-----TLELIKTYVTE---RPVNAVTM--SPLLDHVVLGGGQDASAVTTTDHR 206 (268)
Q Consensus 138 ~v~~s~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~d~~ 206 (268)
.+...+....|..+-.+.-|-.+|.+ +.+.+..+... ..+..+++ .+.+...++.+..+......+|..
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 88888888899999988777777744 23444443222 24566666 444443333333333344555554
No 265
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.89 E-value=0.18 Score=43.27 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=87.5
Q ss_pred CeEEEEEcCC-CCEEEEE-eCCCcEEEEECCCCceeeecccccCcccceEEEEE-------cCCCCEEEEeeCCC-----
Q 024407 90 RINRAVWGPL-NRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK-------AADGSHFLTGSLDK----- 155 (268)
Q Consensus 90 ~v~~~~~~~~-~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~-------s~~~~~l~s~~~d~----- 155 (268)
....++|+|. ...|+.+ ...+.|++.|+.+++...........-.....++| ++++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3567899983 5545444 44577999999887654332211112235788999 99999666665543
Q ss_pred --cEEEEECCC-ccee-----eeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccC-------CCeeeeEeeehhhh
Q 024407 156 --SAKLWDART-LELI-----KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR-------AGKFEAKFFDKILQ 220 (268)
Q Consensus 156 --~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-------~~~~~~~~~~~~~~ 220 (268)
.|.+++... ++.. ..+..-..+..++.+|....++++.... ..+...|.. .+.. |....+
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~-g~V~r~d~~~~~~~~~tg~~----~tp~~~ 294 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEK-GQVFRLDLVDYFKTIKNGGS----WDPIVK 294 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTT-TEEEEECHHHHHHHHHTTCC----CCCBGG
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCC-CEEEEEecccccccccCcee----eccccc
Confidence 266666433 1221 1222122345667777655555544332 233333332 1111 000000
Q ss_pred h------hhccccccccceEEEEECCCCCe-EEeeeCCCeEEEEeeCCC
Q 024407 221 E------EIGGVKGHFGPINALAFNPDGKS-FSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 221 ~------~~~~~~~h~~~v~~~~~sp~~~~-lasgs~Dg~i~i~~~~~~ 262 (268)
. .+... +....-..++|+|+|++ +++=.....|+.+.+++.
T Consensus 295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~ 342 (496)
T 3kya_A 295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342 (496)
T ss_dssp GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence 0 00001 11123578999999994 444456677877767654
No 266
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.85 E-value=0.14 Score=41.39 Aligned_cols=168 Identities=8% Similarity=0.064 Sum_probs=96.4
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeee-ccccc--Cc-ccceEEEEE---cCCCCEEEEee----
Q 024407 85 KGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKE-SDKET--GH-KKTITSLAK---AADGSHFLTGS---- 152 (268)
Q Consensus 85 ~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~~~--~h-~~~v~~v~~---s~~~~~l~s~~---- 152 (268)
+..+.--.++.|++...+|..++ ..++|..||...+..... +.... +- ...+..+.+ .+++.+++++.
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 33344445688988776666665 899999999976543222 11100 11 124578999 68876666433
Q ss_pred ---------CCCcEEEEECC---Ccceeeeeec-------------C-CceeEEEEccCCCeEEEeecCCCceEEEeccC
Q 024407 153 ---------LDKSAKLWDAR---TLELIKTYVT-------------E-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 206 (268)
Q Consensus 153 ---------~d~~i~iwd~~---~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 206 (268)
.+..|..||+. +++.+..... . ..++.++..+.+...+..+.. ...|...+..
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~-~~~I~rV~pd 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG-MPAIARVSAD 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES-SCEEEEECTT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC-CCeEEEEeCC
Confidence 26789999999 6665543321 1 137788888876655544332 1234444433
Q ss_pred CCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeC
Q 024407 207 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 260 (268)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~ 260 (268)
......-.... + . .......+-|+++|+|+.|+....+|.+..+.+.
T Consensus 168 G~~~~~~~~~~--~-~----~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 168 GKTVSTFAWES--G-N----GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp SCCEEEEEECC--C-C----SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCEEeeeeecC--C-C----cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 22221111111 0 0 0111236689999999877766558888777655
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.77 E-value=0.2 Score=42.23 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=84.8
Q ss_pred CCCC--CCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCc
Q 024407 2 FQAN--SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 79 (268)
Q Consensus 2 fs~d--~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (268)
|+|+ ...|+.+...+.|+.+|+++++..........+..+++.+.+.+.++...... . ...+..+........
T Consensus 146 vd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~-~--~~gv~~~~~~~~~~~-- 220 (433)
T 4hw6_A 146 FDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSD-T--NTGIYLFTRASGFTE-- 220 (433)
T ss_dssp ECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCT-T--SEEEEEECGGGTTCC--
T ss_pred EccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCc-c--cceEEEEECCCCeec--
Confidence 4553 34455555548999999987765544333344678888887775444322100 0 001111111111110
Q ss_pred eEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEE-EEeeCCCcE
Q 024407 80 SVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSA 157 (268)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i 157 (268)
...+. .-.....++++| ++...++-..++.|+.+|..++.....+... +....-..++++|+++.| ++-...++|
T Consensus 221 -~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 221 -RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp -EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred -ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 01111 123345678899 5666666667788999999877652222111 111223469999999854 555667889
Q ss_pred EEEECC
Q 024407 158 KLWDAR 163 (268)
Q Consensus 158 ~iwd~~ 163 (268)
..+++.
T Consensus 298 ~~~~~d 303 (433)
T 4hw6_A 298 YRVDYN 303 (433)
T ss_dssp EEEEBC
T ss_pred EEEeCC
Confidence 998865
No 268
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.75 E-value=0.13 Score=39.83 Aligned_cols=191 Identities=10% Similarity=0.030 Sum_probs=97.4
Q ss_pred CCCCCC-EEEEeecCCcEEEeecCCCcEEEEEecC-CCceeeeeecC-CeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSM-TLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~-~l~s~s~D~tv~~wd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+++++ ++++-...+.|..+++........+... ..+..+.+.+. +.+.++.... ..+..... .+.
T Consensus 43 ~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~-----~~I~~~~~------~g~ 111 (267)
T 1npe_A 43 FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQL-----DRIEVAKM------DGT 111 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTT-----TEEEEEET------TSC
T ss_pred EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCC-----CEEEEEEc------CCC
Confidence 456544 4445556789999998765433333222 34667777764 4444332211 11111111 111
Q ss_pred ceEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEE-EEeeCC
Q 024407 79 ESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLD 154 (268)
Q Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d 154 (268)
.....+.........++++|+++.|+.+.. .+.|..+++.... ...+.. ..-.....+++++++..| ++-...
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEEC--TTCSCEEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEE--CCCCCCcEEEEcCCCCEEEEEECCC
Confidence 111112222245688999997766654443 3688888876432 222211 112356788999987655 555667
Q ss_pred CcEEEEECCCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCe
Q 024407 155 KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 209 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 209 (268)
+.|..+|+.................++.. ++.++++... ...+...|...+.
T Consensus 189 ~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~-~~~v~~~d~~~g~ 240 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWK-TNSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETT-TTEEEEEETTTTE
T ss_pred CEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECC-CCeEEEEeCCCCC
Confidence 89999999864432222211223344432 3444444322 2334445544444
No 269
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.63 E-value=0.2 Score=40.42 Aligned_cols=95 Identities=17% Similarity=0.221 Sum_probs=60.7
Q ss_pred CCcEEEEECC---CCceeeeccccc---------C-cccceEEEEEcCCCCEEEEeeCC-CcEEEEECCCcceeeeeec-
Q 024407 109 DAIVRIWDTE---TGKLLKESDKET---------G-HKKTITSLAKAADGSHFLTGSLD-KSAKLWDARTLELIKTYVT- 173 (268)
Q Consensus 109 dg~i~iwd~~---~~~~~~~~~~~~---------~-h~~~v~~v~~s~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~- 173 (268)
+..|..||+. +++......... + -......++..++|+..++.+.- +.|...+..... +..+..
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-VSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-EEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-Eeeeeec
Confidence 6778999998 776654332110 1 11247899999999999998888 888888876432 222221
Q ss_pred C------CceeEEEEccCCCeEEEeecCCCceEEEeccC
Q 024407 174 E------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 206 (268)
Q Consensus 174 ~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 206 (268)
. .-.+.++++|++..+++..+ ...+...|..
T Consensus 178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~--~g~L~~fD~~ 214 (334)
T 2p9w_A 178 SGNGGQRPGYSGITFDPHSNKLIAFGG--PRALTAFDVS 214 (334)
T ss_dssp CCCSSSCCSCSEEEEETTTTEEEEESS--SSSEEEEECS
T ss_pred CCCcccccCcceEEEeCCCCEEEEEcC--CCeEEEEcCC
Confidence 1 12568999998766655544 4455555544
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.42 E-value=0.25 Score=39.16 Aligned_cols=224 Identities=8% Similarity=0.005 Sum_probs=111.1
Q ss_pred CCCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 2 FQANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 2 fs~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
|+++++++++-..++.|..||.+. +....+.....+..+.+.+.+.+.++..... ...+..+.. .+++..
T Consensus 39 ~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~-----~~~v~~~d~----~~g~~~ 108 (306)
T 2p4o_A 39 SAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNAD-----SIPVVSLVK----SDGTVE 108 (306)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTT-----SCEEEEEEC----TTSCEE
T ss_pred ECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCC-----cceEEEEcC----CCCeEE
Confidence 678888777777889999999765 4444455555677788877766554432110 011111111 112211
Q ss_pred EEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeee---cc--cccCcccceEEEEEcCCCCEE-EEee
Q 024407 82 LILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKE---SD--KETGHKKTITSLAKAADGSHF-LTGS 152 (268)
Q Consensus 82 ~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~---~~--~~~~h~~~v~~v~~s~~~~~l-~s~~ 152 (268)
.... ........++..+.+..+++-..++.|..+|..+++ .... +. .....-.....+ ++++..| ++-.
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 1111 111222344444544445555568899999987642 2110 00 000111233445 6777655 4556
Q ss_pred CCCcEEEEECCC-cce--eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhcccccc
Q 024407 153 LDKSAKLWDART-LEL--IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 229 (268)
Q Consensus 153 ~d~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h 229 (268)
..++|..||+.. ++. ...+........+++.+++. ++++... ...+...+.. +.... .. .+...
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~-l~va~~~-~~~V~~~~~~-G~~~~-~~---------~~~~~ 253 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHI-YNSVVRIAPD-RSTTI-IA---------QAEQG 253 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBT-TCCEEEECTT-CCEEE-EE---------CGGGT
T ss_pred CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCC-EEEEeCC-CCeEEEECCC-CCEEE-Ee---------ecccc
Confidence 678999999874 221 11111112345566777654 3333222 2234444433 32211 00 01111
Q ss_pred ccceEEEEEC---CCCCeEEeeeC
Q 024407 230 FGPINALAFN---PDGKSFSSGGE 250 (268)
Q Consensus 230 ~~~v~~~~~s---p~~~~lasgs~ 250 (268)
....++++|. |+++.|..++.
T Consensus 254 ~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 254 VIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred cCCceEEEEecccCCCCEEEEECC
Confidence 2357899998 88776554443
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.17 E-value=0.48 Score=39.84 Aligned_cols=157 Identities=10% Similarity=0.101 Sum_probs=84.8
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC---Cc-EEEEECC
Q 024407 90 RINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KS-AKLWDAR 163 (268)
Q Consensus 90 ~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~-i~iwd~~ 163 (268)
....++++|+ ...|+.+...+.|+.+|+.+++...... .......+++++++.++++-... .. +...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~----~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT----NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC----CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec----CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence 4568899995 4555555444899999998776543322 23457789999999944444321 11 3333322
Q ss_pred Ccce-eeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 164 TLEL-IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 164 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
.... ...+..-.....++++|....++++.. ....+...+...+.....++.. +....-..++|+|++
T Consensus 216 ~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~-~~~~V~~~d~~~g~~~~~~~~~----------~~~~~~~~ia~dpdG 284 (433)
T 4hw6_A 216 SGFTERLSLCNARGAKTCAVHPQNGKIYYTRY-HHAMISSYDPATGTLTEEEVMM----------DTKGSNFHIVWHPTG 284 (433)
T ss_dssp GTTCCEEEEEECSSBCCCEECTTTCCEEECBT-TCSEEEEECTTTCCEEEEEEEC----------SCCSSCEEEEECTTS
T ss_pred CCeeccccccccCCCCEEEEeCCCCeEEEEEC-CCCEEEEEECCCCeEEEEEecc----------CCCCCcccEEEeCCC
Confidence 1110 011112233456677774445554432 2334555555444431111110 011123469999999
Q ss_pred Ce-EEeeeCCCeEEEEeeCC
Q 024407 243 KS-FSSGGEDGYVRLHHFDP 261 (268)
Q Consensus 243 ~~-lasgs~Dg~i~i~~~~~ 261 (268)
++ +++-...+.|+.+.++.
T Consensus 285 ~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 285 DWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp SEEEEEETTTTEEEEEEBCT
T ss_pred CEEEEEeCCCCEEEEEeCCC
Confidence 84 45555667888877764
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.42 E-value=0.92 Score=37.40 Aligned_cols=161 Identities=7% Similarity=-0.017 Sum_probs=89.7
Q ss_pred CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC-CCEEEEeeCCCcEEEEECCCc
Q 024407 88 QGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~iwd~~~~ 165 (268)
......++|++.++.| ++-...+.|..+++........+.. .......+++.+. +.++++-...+.|.+.++...
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~---~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST---GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS---SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC---CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence 4457889999866655 4556778899999876543222211 1123456778864 445566667788999888754
Q ss_pred ceeeeeecC-CceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCe
Q 024407 166 ELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244 (268)
Q Consensus 166 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 244 (268)
.....+... .....++..|.+..++.+-......|...+..... ...+. ......-+.|+++|+++.
T Consensus 192 ~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~-----------~~~~~~PnGlavd~~~~~ 259 (386)
T 3v65_B 192 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIA-----------DTHLFWPNGLTIDYAGRR 259 (386)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEE-----------CSSCSCEEEEEEEGGGTE
T ss_pred ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEE-----------ECCCCCeeeEEEeCCCCE
Confidence 322212111 35678888887666665433221333333322111 00110 011223578999976654
Q ss_pred -EEeeeCCCeEEEEeeCCCc
Q 024407 245 -FSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 245 -lasgs~Dg~i~i~~~~~~~ 263 (268)
.++=+..+.|..+++++..
T Consensus 260 lY~aD~~~~~I~~~d~dG~~ 279 (386)
T 3v65_B 260 MYWVDAKHHVIERANLDGSH 279 (386)
T ss_dssp EEEEETTTTEEEEECTTSCS
T ss_pred EEEEECCCCEEEEEeCCCCe
Confidence 4444456778777777653
No 273
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.42 E-value=1.5 Score=39.84 Aligned_cols=151 Identities=7% Similarity=0.113 Sum_probs=86.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccc-cCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcc
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 166 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~ 166 (268)
...|.++...++++.|..|+.++-|..||..+++...-.... ......|.++...+++...+. +. +-|..||.++++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRS 482 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCe
Confidence 356888888888885666777777999999887643221100 113456888888887775544 44 458889988764
Q ss_pred eeeeeec--------CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEE
Q 024407 167 LIKTYVT--------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 238 (268)
Q Consensus 167 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 238 (268)
... +.. ...+.++...+.+ .+.++.. .+ +..++...+.+ .+...... ..-+...|.++..
T Consensus 483 ~~~-~~~~~~~~~~~~~~i~~i~~d~~g-~lWigt~-~G--l~~~~~~~~~~--~~~~~~~~-----~~l~~~~i~~i~~ 550 (795)
T 4a2l_A 483 FTT-IEKEKDGTPVVSKQITTLFRDSHK-RLWIGGE-EG--LSVFKQEGLDI--QKASILPV-----SNVTKLFTNCIYE 550 (795)
T ss_dssp EEE-CCBCTTCCBCCCCCEEEEEECTTC-CEEEEES-SC--EEEEEEETTEE--EECCCSCS-----CGGGGSCEEEEEE
T ss_pred EEE-ccccccccccCCceEEEEEECCCC-CEEEEeC-Cc--eEEEeCCCCeE--EEecCCCC-----CCCCCCeeEEEEE
Confidence 422 211 1345666666543 4555554 22 33444433333 11100000 0112356999999
Q ss_pred CCCCCeEEeeeCCCe
Q 024407 239 NPDGKSFSSGGEDGY 253 (268)
Q Consensus 239 sp~~~~lasgs~Dg~ 253 (268)
.++|+..++.. .|.
T Consensus 551 d~~g~lWigT~-~Gl 564 (795)
T 4a2l_A 551 ASNGIIWVGTR-EGF 564 (795)
T ss_dssp CTTSCEEEEES-SCE
T ss_pred CCCCCEEEEeC-CCc
Confidence 99998776544 343
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.38 E-value=0.88 Score=36.93 Aligned_cols=161 Identities=7% Similarity=-0.012 Sum_probs=91.1
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCC-CCEEEEeeCCCcEEEEECCCc
Q 024407 88 QGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~iwd~~~~ 165 (268)
......++|++..+.|+ +-...+.|..+++........+.. .......+++.+. +..+++-...+.|.+.++...
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~---~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST---GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC---CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 34578899998766554 555778899999876543222111 1123457888864 455566677789999998754
Q ss_pred ceeeeeec-CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCe
Q 024407 166 ELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244 (268)
Q Consensus 166 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 244 (268)
........ -.....+++.|.+..++.+-......|...+..... ...+ .......-+.++++|+++.
T Consensus 149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~-----------~~~~~~~PnGla~d~~~~~ 216 (349)
T 3v64_C 149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRII-----------ADTHLFWPNGLTIDYAGRR 216 (349)
T ss_dssp SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEES-----------CCSSCSCEEEEEEETTTTE
T ss_pred ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEE-----------EECCCCCcceEEEeCCCCE
Confidence 32221111 235678888887666655433221233333221110 0000 0011234578999986654
Q ss_pred -EEeeeCCCeEEEEeeCCCc
Q 024407 245 -FSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 245 -lasgs~Dg~i~i~~~~~~~ 263 (268)
.++-...+.|..+++++..
T Consensus 217 lY~aD~~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDGSH 236 (349)
T ss_dssp EEEEETTTTEEEEEETTSCS
T ss_pred EEEEECCCCEEEEEeCCCCc
Confidence 4444556788888887654
No 275
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.37 E-value=0.29 Score=43.58 Aligned_cols=119 Identities=16% Similarity=0.210 Sum_probs=68.1
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-CCcEEE
Q 024407 93 RAVWGP-LNRTIISAGEDA-----------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKL 159 (268)
Q Consensus 93 ~~~~~~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~i 159 (268)
.+++.| +++.++.||.++ .+.+||+.+++..........+.....++++..++..++.++. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456667 778888887653 5889999887543211110112223335667789999999884 457999
Q ss_pred EECCCcceeee--eecCCceeEEEEccCCCeEEEeecCCC----ceEEEeccCCCeee
Q 024407 160 WDARTLELIKT--YVTERPVNAVTMSPLLDHVVLGGGQDA----SAVTTTDHRAGKFE 211 (268)
Q Consensus 160 wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~ 211 (268)
||+.+.+.... +...+.-..+...+++..+++++..+. ..+..+|.....+.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 99987654322 112222234445555555555542221 34566676655543
No 276
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.24 E-value=0.32 Score=43.74 Aligned_cols=160 Identities=6% Similarity=-0.041 Sum_probs=83.9
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEEEEC
Q 024407 89 GRINRAVWGPLNRTIISA-GEDAIVRIWDTET----GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~----~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iwd~ 162 (268)
..+..++|++.++.|+.+ ...+.|+.+++.. ......+. ..-.....+++.+ .+.++++-...+.|.++++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~---~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC---SCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe---CCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence 345678888877666544 4668899999875 11111111 0112344677775 4455566567788999998
Q ss_pred CCcceeeeeec-CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC
Q 024407 163 RTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241 (268)
Q Consensus 163 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 241 (268)
........+.. ......+++.|.+..++.+-......|...+... .....+. ......-+.|+|+|+
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~-----------~~~l~~PnGlavd~~ 550 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV-----------TENIQWPNGITLDLL 550 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEES-----------CSSCSSCCCEEECTT
T ss_pred CCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEE-----------eCCCCCccEEEEecc
Confidence 76433222211 1345677777765555544321112232222111 0000000 011123457999987
Q ss_pred CC-eEEeeeCCCeEEEEeeCCCc
Q 024407 242 GK-SFSSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 242 ~~-~lasgs~Dg~i~i~~~~~~~ 263 (268)
++ ++++-+..+.|.++.+++..
T Consensus 551 ~~~LY~aD~~~~~I~~~d~dG~~ 573 (699)
T 1n7d_A 551 SGRLYWVDSKLHSISSIDVNGGN 573 (699)
T ss_dssp TCCEEEEETTTTEEEEECSSSSC
T ss_pred CCEEEEEecCCCeEEEEccCCCc
Confidence 54 44455566788888877643
No 277
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.19 E-value=1.2 Score=37.33 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=54.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee--------------eccccc-CcccceEEEEEcCC---CCEEEE
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK--------------ESDKET-GHKKTITSLAKAAD---GSHFLT 150 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------~~~~~~-~h~~~v~~v~~s~~---~~~l~s 150 (268)
..|..+..+|+|++|+.. .+..|.|-.+..+.... .+.... ..+.+|..+.|+|- +..|++
T Consensus 66 ~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp CTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred CceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 367889999999998766 55689999887432111 111111 12578999999985 457999
Q ss_pred eeCCCcEEEEECCC
Q 024407 151 GSLDKSAKLWDART 164 (268)
Q Consensus 151 ~~~d~~i~iwd~~~ 164 (268)
-..|++|++||+..
T Consensus 145 LtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 145 LKEDDTITMFDILN 158 (452)
T ss_dssp EETTSCEEEEETTC
T ss_pred EecCCEEEEEEccc
Confidence 99999999999986
No 278
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.94 E-value=2.1 Score=38.81 Aligned_cols=153 Identities=12% Similarity=0.124 Sum_probs=83.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccC-cccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcc
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG-HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 166 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~ 166 (268)
...|.++...++|+..+ |+..+-+..||..+++... +....+ ....|.++...+++.+.++ +.+|-+..||.++.+
T Consensus 494 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFD 570 (781)
T ss_dssp CSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCC
T ss_pred cceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCc
Confidence 35688888888887655 4443447778887654322 211111 2346888888888875544 446654888887654
Q ss_pred eeeeeec-----CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC
Q 024407 167 LIKTYVT-----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241 (268)
Q Consensus 167 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 241 (268)
. ..+.. ...+.++...+.+ .+.+++..+ +...+...+.+. .+....+ +....-...++...++
T Consensus 571 ~-~~~~~~~gl~~~~i~~i~~d~~g-~lW~~t~~G---l~~~~~~~~~~~--~~~~~dG-----l~~~~f~~~~~~~~~~ 638 (781)
T 3v9f_A 571 Y-QVFQRKEGLPNTHIRAISEDKNG-NIWASTNTG---ISCYITSKKCFY--TYDHSNN-----IPQGSFISGCVTKDHN 638 (781)
T ss_dssp C-EEECGGGTCSCCCCCEEEECSSS-CEEEECSSC---EEEEETTTTEEE--EECGGGT-----CCSSCEEEEEEEECTT
T ss_pred E-EEccccCCCCCceEEEEEECCCC-CEEEEcCCc---eEEEECCCCceE--EecccCC-----ccccccccCceEECCC
Confidence 3 22211 1235566666643 456654322 444555544432 2222111 1111112356777888
Q ss_pred CCeEEeeeCCCeEEE
Q 024407 242 GKSFSSGGEDGYVRL 256 (268)
Q Consensus 242 ~~~lasgs~Dg~i~i 256 (268)
|+.++ |+.+|.+++
T Consensus 639 G~l~~-g~~~Gl~~f 652 (781)
T 3v9f_A 639 GLIYF-GSINGLCFF 652 (781)
T ss_dssp SCEEE-EETTEEEEE
T ss_pred CEEEE-ECCCceEEE
Confidence 88776 566776544
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=94.85 E-value=1.2 Score=35.55 Aligned_cols=161 Identities=7% Similarity=-0.030 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCC---ceeeecccccCcccceEEEEEcCC-CCEEEEeeCCCcEEEEECC
Q 024407 89 GRINRAVWGPLNRTI-ISAGEDAIVRIWDTETG---KLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~---~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~iwd~~ 163 (268)
.....+.|++.++.| ++-...+.|..+++... .....+.. ..-.....+++++. +..+++-...+.|.+.|+.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence 456778999876555 45566789999998751 11111111 11123467888864 4455666778899999987
Q ss_pred Ccceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 164 TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
......... .......++..|.+..++.+.......|...+.. +.....+.. ......+.++++|++
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~-----------~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT-----------ENIQWPNGITLDLLS 175 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC-----------SSCSCEEEEEEETTT
T ss_pred CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEE-----------CCCCCceEEEEeccC
Confidence 543222121 2235678888887666665532221233333221 111111100 112346789999876
Q ss_pred CeE-EeeeCCCeEEEEeeCCCc
Q 024407 243 KSF-SSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 243 ~~l-asgs~Dg~i~i~~~~~~~ 263 (268)
+.| ++-+..+.|..+++++..
T Consensus 176 ~~lY~~D~~~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 176 GRLYWVDSKLHSISSIDVNGGN 197 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSCS
T ss_pred CEEEEEECCCCeEEEEecCCCc
Confidence 554 444456788888887653
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.82 E-value=1.1 Score=35.28 Aligned_cols=162 Identities=12% Similarity=0.006 Sum_probs=84.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCC--cEEEEECCCcc
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDARTLE 166 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~--~i~iwd~~~~~ 166 (268)
.....+.|+|+++.+++-...+.|..||.... ...... -......+++++++..+++....+ .|..+|..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~----~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT----VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE----CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe----CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 45678999999997777778899999998753 222221 123577899999998666554432 47777877765
Q ss_pred eeeeeec--CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCe
Q 024407 167 LIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244 (268)
Q Consensus 167 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 244 (268)
....... ......++..+ +..++++. .....++..|...+............ ...........+.+ +|+++.
T Consensus 107 ~~~~~~~~~~~~~~g~~~~~-~~~~~v~d-~~~g~i~~~d~~~~~~~v~~~~~~~~--~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 107 VETLLTLPDAIFLNGITPLS-DTQYLTAD-SYRGAIWLIDVVQPSGSIWLEHPMLA--RSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp EEEEEECTTCSCEEEEEESS-SSEEEEEE-TTTTEEEEEETTTTEEEEEEECGGGS--CSSTTCCSCSEEEE--EEETTE
T ss_pred EEEEEeCCCccccCcccccC-CCcEEEEE-CCCCeEEEEeCCCCcEeEEEECCccc--cccccCCCCcCCCc--CcCCCE
Confidence 4322111 11223333333 23333332 22334555554433211111111000 00000111123444 788765
Q ss_pred E-EeeeCCCeEEEEeeCC
Q 024407 245 F-SSGGEDGYVRLHHFDP 261 (268)
Q Consensus 245 l-asgs~Dg~i~i~~~~~ 261 (268)
| ++-...+.|.+++++.
T Consensus 181 lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 181 LYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp EEEEETTTTEEEEEEBCT
T ss_pred EEEEeCCCCEEEEEEeCC
Confidence 4 4555677888888764
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=94.45 E-value=1.3 Score=34.28 Aligned_cols=180 Identities=12% Similarity=0.116 Sum_probs=100.2
Q ss_pred CCCCCCEEE-EeecCCcEEEeecCCCcEEEEEecC--CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCC
Q 024407 2 FQANSMTLI-TGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 78 (268)
Q Consensus 2 fs~d~~~l~-s~s~D~tv~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (268)
|+|+++.|+ +...++.|...|++ ++.+..+... .....+.+..++.++++. ... ..+.+..+.... ..
T Consensus 34 ~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~-E~~----~~l~~~~v~~~~---~i 104 (255)
T 3qqz_A 34 WSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISD-ERD----YAIYVISLTPNS---EV 104 (255)
T ss_dssp EETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEE-TTT----TEEEEEEECTTC---CE
T ss_pred EeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEE-CCC----CcEEEEEcCCCC---ee
Confidence 567666555 57778889889988 8887777643 356677777666655442 211 111111111100 00
Q ss_pred ceEEEEe------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceeeeccc----ccCcccceEEEEEcCCC
Q 024407 79 ESVLILK------GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE---TGKLLKESDK----ETGHKKTITSLAKAADG 145 (268)
Q Consensus 79 ~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~----~~~h~~~v~~v~~s~~~ 145 (268)
..+.... ..+.....++|+|.+++|+++.......+|... ..+....... ...+.....++++.|..
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 0111111 234567899999999888777766555555543 1111111100 01123346788899876
Q ss_pred CEEE-EeeCCCcEEEEECCCcceeeeeecC----------CceeEEEEccCCCeEEEe
Q 024407 146 SHFL-TGSLDKSAKLWDARTLELIKTYVTE----------RPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 146 ~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 192 (268)
.++. ....++.|..+|... +.+..+... .+...+++.+.+. +.++
T Consensus 185 g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv 240 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV 240 (255)
T ss_dssp TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE
T ss_pred CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE
Confidence 6555 445566788899764 455544322 2568899999764 4444
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.23 E-value=1.7 Score=34.76 Aligned_cols=158 Identities=8% Similarity=0.018 Sum_probs=87.1
Q ss_pred eEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEEEECCCccee
Q 024407 91 INRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELI 168 (268)
Q Consensus 91 v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~ 168 (268)
...++|++.++.| .+-...+.|..+++..+.....+.. . .-.....+++.+ .+..+++-...+.|.++++.....
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-~-~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~- 113 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-S-GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR- 113 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE-E-CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc-C-CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-
Confidence 4567888865544 5556778899999876532111110 0 112345788886 455556666778999999875432
Q ss_pred eeee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeE-
Q 024407 169 KTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF- 245 (268)
Q Consensus 169 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l- 245 (268)
..+. .-.....++..|.+..++.+-......|...+.. |.....+.. .....-+.++++|+++.|
T Consensus 114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~-----------~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIIN-----------SEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEEC-----------SSCSCEEEEEEETTTTEEE
T ss_pred EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEE-----------CCCCCccEEEEeccCCEEE
Confidence 2221 2235678888886665555432222233333221 111111100 111235789999866544
Q ss_pred EeeeCCCeEEEEeeCCCc
Q 024407 246 SSGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 246 asgs~Dg~i~i~~~~~~~ 263 (268)
.+=+..+.|..+++++..
T Consensus 182 ~aD~~~~~I~~~d~dG~~ 199 (318)
T 3sov_A 182 WADAKLNFIHKSNLDGTN 199 (318)
T ss_dssp EEETTTTEEEEEETTSCS
T ss_pred EEECCCCEEEEEcCCCCc
Confidence 444556788888887654
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.69 E-value=4.1 Score=37.18 Aligned_cols=162 Identities=8% Similarity=-0.036 Sum_probs=87.3
Q ss_pred CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCce---eeecccccCcccceEEEEEcCCC-CEEEEeeCCCcEEEEE
Q 024407 87 PQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWD 161 (268)
Q Consensus 87 ~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~iwd 161 (268)
....+..++|++..+.| ++-...+.|+.+++..... ...+. ...-.....|++.+.+ +++++-...+.|.+.+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi--~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE--ecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence 34567788998865554 4556678888888865211 11111 1112345578888766 4556667788999999
Q ss_pred CCCcceeeeee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 162 ARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 162 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
+..... ..+. .-.....+++.|..+.++.+-......|...+.. |.....+.. ......+.|++.
T Consensus 500 ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~-----------~~l~~P~GLavD 566 (791)
T 3m0c_C 500 TKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT-----------ENIQWPNGITLD 566 (791)
T ss_dssp TTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC-----------SSCSCEEEEEEE
T ss_pred CCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEe-----------CCCCCceEEEEe
Confidence 875433 2322 1234778888887666665432221233333222 111111111 112345678888
Q ss_pred CCCCeEEee-eCCCeEEEEeeCCCc
Q 024407 240 PDGKSFSSG-GEDGYVRLHHFDPDY 263 (268)
Q Consensus 240 p~~~~lasg-s~Dg~i~i~~~~~~~ 263 (268)
+.++.|..+ .....|....+++..
T Consensus 567 ~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 567 LLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cCCCeEEEEeCCCCcEEEEecCCCc
Confidence 765544433 445677777776654
No 284
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=93.67 E-value=5.1 Score=38.27 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=70.6
Q ss_pred CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeee-eecCCceeEEEEccCC
Q 024407 108 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YVTERPVNAVTMSPLL 186 (268)
Q Consensus 108 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~ 186 (268)
..|.|++|++..++. ..+.. ...+.+|++++-- +| +|++|- ..+|++|++...+.+.. ...-..+..+.....+
T Consensus 862 ~~Gri~vf~v~~~kL-~lv~~-~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~ 936 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGKL-QTVAE-KEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKG 936 (1158)
T ss_dssp CCEEEEEEEEETTEE-EEEEE-EEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEET
T ss_pred CceEEEEEEEECCEE-EEEEE-EEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccC
Confidence 357789998864432 22211 1245678887632 45 444443 47899999986543331 0000111122222223
Q ss_pred CeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 187 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 187 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..++++--..+..+..++.....+... .. .-++.+++++.|=.+ ..++.+..+|.+.+.+++++
T Consensus 937 ~~I~vgD~~~Sv~~~~y~~~~~~L~~~----------a~-D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 937 DFILVGDLMRSVLLLAYKPMEGNFEEI----------AR-DFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp TEEEEEESSBCEEEEEEETTTTEEEEE----------EE-CCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTT
T ss_pred CEEEEEEhhheEEEEEEEcCCCeEEEE----------Ee-ecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCC
Confidence 444444333333333333222221110 00 113456888887544 46777899999999999885
No 285
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=93.60 E-value=4.1 Score=36.90 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=88.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 167 (268)
...|.++...++++..+ |+.++-+..+|..+++... +.........|.++...+++. |..++. +-|..+|.++++.
T Consensus 406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKV 481 (781)
T ss_dssp CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSC
T ss_pred CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeE
Confidence 45688888887776544 6676778899987765432 211011235688888777775 444555 5588999887654
Q ss_pred eeeeec------CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCC
Q 024407 168 IKTYVT------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 241 (268)
Q Consensus 168 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 241 (268)
...... ...+.++...+.+ .+.++....+ +..++...+.+.. +.. .. .+ ....|.++...++
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigt~~~G--l~~~~~~~~~~~~--~~~--~~---~l--~~~~i~~i~~d~~ 549 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEG-RFWIGTFGGG--VGIYTPDMQLVRK--FNQ--YE---GF--CSNTINQIYRSSK 549 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTC-CEEEEESSSC--EEEECTTCCEEEE--ECT--TT---TC--SCSCEEEEEECTT
T ss_pred EecccCcccccccceeEEEEEcCCC-CEEEEEcCCC--EEEEeCCCCeEEE--ccC--CC---CC--CCCeeEEEEECCC
Confidence 322111 2345666666643 4555543222 3445554443322 111 00 11 1346899999999
Q ss_pred CCeEEeeeCCCeEEEEee
Q 024407 242 GKSFSSGGEDGYVRLHHF 259 (268)
Q Consensus 242 ~~~lasgs~Dg~i~i~~~ 259 (268)
|+..++.. +|.+..|+.
T Consensus 550 g~lWi~T~-~Glv~~~d~ 566 (781)
T 3v9f_A 550 GQMWLATG-EGLVCFPSA 566 (781)
T ss_dssp SCEEEEET-TEEEEESCT
T ss_pred CCEEEEEC-CCceEEECC
Confidence 98777544 665344433
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=93.55 E-value=2.7 Score=34.75 Aligned_cols=163 Identities=6% Similarity=-0.034 Sum_probs=89.8
Q ss_pred CCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCc---eeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEEEE
Q 024407 87 PQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGK---LLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWD 161 (268)
Q Consensus 87 ~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~---~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iwd 161 (268)
....+..++|++..+.|+ +-...+.|+.+++.... ....+. .........+++.+ .+.++++-...+.|.+.+
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~--~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~ 187 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 187 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE--eCCCCCcccEEEEecCCceEEEECCCCeEEEEe
Confidence 345678899998766554 44567889888886522 111111 11223466788887 455566667788999999
Q ss_pred CCCcceeeeee-cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC
Q 024407 162 ARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240 (268)
Q Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 240 (268)
+........+. .-.....++..|.+..++.+-......|...+..... ...+. .......+.|+++|
T Consensus 188 ~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~-----------~~~l~~P~glavd~ 255 (400)
T 3p5b_L 188 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV-----------TENIQWPNGITLDL 255 (400)
T ss_dssp TTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEE-----------CSSCSCEEEEEEET
T ss_pred CCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEE-----------ECCCCceEEEEEEe
Confidence 87644322222 1234678888887666655432221223332221110 01110 01113457899998
Q ss_pred CCCeEEee-eCCCeEEEEeeCCCc
Q 024407 241 DGKSFSSG-GEDGYVRLHHFDPDY 263 (268)
Q Consensus 241 ~~~~lasg-s~Dg~i~i~~~~~~~ 263 (268)
+++.|.-+ .....|..+++++..
T Consensus 256 ~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 256 LSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCC
T ss_pred CCCEEEEEECCCCEEEEEeCCCCc
Confidence 76654443 456778888877654
No 287
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=93.17 E-value=4.8 Score=36.50 Aligned_cols=147 Identities=10% Similarity=0.132 Sum_probs=84.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccc---ccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCC
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK---ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~ 164 (268)
...|.++...++|+..+.. . +-+..||..+++....... ..-....|.++...+++...+.. . +-|..||.++
T Consensus 451 ~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~ 526 (795)
T 4a2l_A 451 NENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEG 526 (795)
T ss_dssp CSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEET
T ss_pred CCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCC
Confidence 4568888888888765543 4 4588899887654321110 01123568888888888755544 4 4588899876
Q ss_pred cceeeeee--------cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEE
Q 024407 165 LELIKTYV--------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 236 (268)
Q Consensus 165 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 236 (268)
.+. .+. ....+.++...+.+ .+.+++.. + +..+|...+.+.. +... . .+. ...|.++
T Consensus 527 ~~~--~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigT~~-G--l~~~d~~~~~~~~--~~~~--~---gl~--~~~i~~i 591 (795)
T 4a2l_A 527 LDI--QKASILPVSNVTKLFTNCIYEASNG-IIWVGTRE-G--FYCFNEKDKQIKR--YNTT--N---GLP--NNVVYGI 591 (795)
T ss_dssp TEE--EECCCSCSCGGGGSCEEEEEECTTS-CEEEEESS-C--EEEEETTTTEEEE--ECGG--G---TCS--CSCEEEE
T ss_pred CeE--EEecCCCCCCCCCCeeEEEEECCCC-CEEEEeCC-C--ceeECCCCCcEEE--eCCC--C---CCc--hhheEEE
Confidence 554 221 12245666666644 45555433 2 4455555544332 2211 0 111 2358899
Q ss_pred EECCCCCeEEeeeCCCeE
Q 024407 237 AFNPDGKSFSSGGEDGYV 254 (268)
Q Consensus 237 ~~sp~~~~lasgs~Dg~i 254 (268)
...++|+..+++ ..|..
T Consensus 592 ~~d~~g~lWi~t-~~Gl~ 608 (795)
T 4a2l_A 592 LEDSFGRLWLST-NRGIS 608 (795)
T ss_dssp EECTTSCEEEEE-TTEEE
T ss_pred EECCCCCEEEEc-CCceE
Confidence 999999887765 34443
No 288
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.56 E-value=3.6 Score=33.51 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=82.2
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEe------------CCCcEEEEECCCC--ceeeecccccC----cccceEEEEEcC--
Q 024407 84 LKGPQGRINRAVWGPLNRTIISAG------------EDAIVRIWDTETG--KLLKESDKETG----HKKTITSLAKAA-- 143 (268)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~--~~~~~~~~~~~----h~~~v~~v~~s~-- 143 (268)
+++-...-.++...|+|..+++++ .+|.|.++|+.+. +. ..+..... ..-....+.+.+
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECC
Confidence 344233446677788776555542 7899999999742 32 22221111 122455565544
Q ss_pred CCC-EEEEeeC---CCcEEEEECCCcc----eeeeeecC--CceeEEEEccCCCeEEEeec---C-------------CC
Q 024407 144 DGS-HFLTGSL---DKSAKLWDARTLE----LIKTYVTE--RPVNAVTMSPLLDHVVLGGG---Q-------------DA 197 (268)
Q Consensus 144 ~~~-~l~s~~~---d~~i~iwd~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~-------------~~ 197 (268)
++. +|+.+.. +.+|.+|++.... .+.++... ...+.+...+.+. +.++.. . ..
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCc
Confidence 454 4544432 4567777765421 12222221 2467777777654 333221 0 11
Q ss_pred ceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEe-eeCCCeEEEEeeCCC
Q 024407 198 SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS-GGEDGYVRLHHFDPD 262 (268)
Q Consensus 198 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~las-gs~Dg~i~i~~~~~~ 262 (268)
+.+...+.. .+..+......-+.++||||++.+.. -+..+.|+.|+++.+
T Consensus 203 g~vyr~d~~---------------~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~ 253 (355)
T 3sre_A 203 SFVTYYSPN---------------DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 253 (355)
T ss_dssp EEEEEECTT---------------CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred cEEEEEECC---------------eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence 122222211 11111112234578999999977554 445788988888754
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=92.54 E-value=1.7 Score=39.08 Aligned_cols=82 Identities=15% Similarity=0.014 Sum_probs=49.5
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce
Q 024407 89 GRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 167 (268)
...+.++|+|++++| ++-+..+.|..+|+..... ..+......-.....+++..+ .++++....+.|..+|..+++.
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 345679999986655 5556778899999864322 222111111122234444443 5566777778999999888776
Q ss_pred eeeee
Q 024407 168 IKTYV 172 (268)
Q Consensus 168 ~~~~~ 172 (268)
+..+.
T Consensus 618 ~~~i~ 622 (699)
T 1n7d_A 618 VNLLA 622 (699)
T ss_dssp EECCC
T ss_pred eEEee
Confidence 66553
No 290
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=92.52 E-value=3.8 Score=33.65 Aligned_cols=176 Identities=7% Similarity=-0.060 Sum_probs=91.7
Q ss_pred cCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEE
Q 024407 14 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 93 (268)
Q Consensus 14 ~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 93 (268)
....|+..++..............+..++|.+....+.++... .. .+.++.. .++.....+.........
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~----~~--~I~r~~~----~g~~~~~~~~~~~~~p~g 163 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT----LD--RILRANL----NGSNVEEVVSTGLESPGG 163 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETT----TT--EEEEEET----TSCCEEEEECSSCSCCCC
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCC----CC--cEEEEec----CCCCcEEEEeCCCCCccE
Confidence 3457888888766544444434446677777543333322111 01 1111111 112222223322334566
Q ss_pred EEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEE-EeeCC-CcEEEEECCCcceeee
Q 024407 94 AVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLD-KSAKLWDARTLELIKT 170 (268)
Q Consensus 94 ~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d-~~i~iwd~~~~~~~~~ 170 (268)
+++++.++.| ++-...+.|.+.++..... ..+.. ..-.....++++|.+..|. +-... +.|..+++..... ..
T Consensus 164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~--~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~ 239 (386)
T 3v65_B 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLW--QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RI 239 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEEC--SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EE
T ss_pred EEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeec--CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EE
Confidence 7888766554 5556678888888764332 22211 1223467888998655554 44444 7888888875332 22
Q ss_pred eec--CCceeEEEEccCCCeEEEeecCCCceEEEec
Q 024407 171 YVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 204 (268)
Q Consensus 171 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 204 (268)
+.. -...+.++++|.++.+..+-.. ...|...+
T Consensus 240 ~~~~~~~~PnGlavd~~~~~lY~aD~~-~~~I~~~d 274 (386)
T 3v65_B 240 IADTHLFWPNGLTIDYAGRRMYWVDAK-HHVIERAN 274 (386)
T ss_dssp EECSSCSCEEEEEEEGGGTEEEEEETT-TTEEEEEC
T ss_pred EEECCCCCeeeEEEeCCCCEEEEEECC-CCEEEEEe
Confidence 221 2246788998876666655332 23444444
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.30 E-value=3.3 Score=33.54 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee----cCCceeEEEEccC---CCeEEEee
Q 024407 135 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPL---LDHVVLGG 193 (268)
Q Consensus 135 ~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~ 193 (268)
....+++.|++.++++ ..++.|.+++-...+.+..+. .......++++|+ +..+.++.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 3568899999985555 556999999822112222111 1345788999986 45555543
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.14 E-value=4 Score=33.04 Aligned_cols=103 Identities=10% Similarity=0.051 Sum_probs=58.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eeecccccCcccceEEEEEcCC---CCEE-EEeeCC-----Cc
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAAD---GSHF-LTGSLD-----KS 156 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~v~~s~~---~~~l-~s~~~d-----~~ 156 (268)
-.....++|.|+|+.+++ ..+|.|++++ +++. +..+.....-......++++|+ +..| ++-... +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345678999999985554 5669999998 3432 1112111112346788999998 4444 444332 67
Q ss_pred EEEEECCCcc-----ee-eeeec----CCceeEEEEccCCCeEEEeec
Q 024407 157 AKLWDARTLE-----LI-KTYVT----ERPVNAVTMSPLLDHVVLGGG 194 (268)
Q Consensus 157 i~iwd~~~~~-----~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~ 194 (268)
|..++..... .+ ..+.. .+....+.+.|++ .+.++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEEC
Confidence 8888876431 11 11210 1234678888876 4555433
No 293
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=91.63 E-value=1.4 Score=35.70 Aligned_cols=118 Identities=12% Similarity=0.118 Sum_probs=69.7
Q ss_pred CEEEEeecCCcEEEeecCCCcEEEEEecC--CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEE
Q 024407 7 MTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 84 (268)
Q Consensus 7 ~~l~s~s~D~tv~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (268)
.+++.++.||.|.-.|.++|+..+.++.. .++.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-------------------------------------------~ 47 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-------------------------------------------I 47 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-------------------------------------------C
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-------------------------------------------e
Confidence 47899999999999999999999988643 11100 0
Q ss_pred ecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeecccc-cCcccceEEE---EE-----cCCCCEEEEeeCC
Q 024407 85 KGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKE-TGHKKTITSL---AK-----AADGSHFLTGSLD 154 (268)
Q Consensus 85 ~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v---~~-----s~~~~~l~s~~~d 154 (268)
.+.... .++..++.. +.||.|..+|..+|.....+... ....+++..- .+ ...+..+++++.+
T Consensus 48 ~~~~~~-------~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~ 120 (339)
T 2be1_A 48 QEPSRL-------ETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMR 120 (339)
T ss_dssp CCSCTT-------TSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEE
T ss_pred cCCccc-------cCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecC
Confidence 000000 012222332 57888888888777433211100 0011222210 00 0145678899999
Q ss_pred CcEEEEECCCcceeeeeecC
Q 024407 155 KSAKLWDARTLELIKTYVTE 174 (268)
Q Consensus 155 ~~i~iwd~~~~~~~~~~~~~ 174 (268)
+++.-.|+++++.+..+...
T Consensus 121 g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 121 TIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEEEEEETTTCCEEEEESTT
T ss_pred CEEEEEECCCCcEEEEEecC
Confidence 99999999999988877543
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=91.29 E-value=6.4 Score=33.68 Aligned_cols=156 Identities=16% Similarity=0.099 Sum_probs=81.9
Q ss_pred CCC-CCCEEEEeec-CCcEEEeecCCCcEEEEEecCC----Cceeeee-------ecCCeEEEEEcCCCcccccceEeee
Q 024407 2 FQA-NSMTLITGSA-DQTAKLWNVETGAQLFTFNFDS----PARSVDF-------AVGDKLAVITTDPFMELNSAIHVKR 68 (268)
Q Consensus 2 fs~-d~~~l~s~s~-D~tv~~wd~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (268)
|+| +...|+.+.. .+.|++.|++++.......... .+..+++ .+....++++............+..
T Consensus 146 ~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~ 225 (496)
T 3kya_A 146 FDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYI 225 (496)
T ss_dssp EETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEE
T ss_pred EccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEE
Confidence 566 3444554544 4678888988776554443321 3677778 7766544444322101001111222
Q ss_pred eeeCC--CCCC-C--ceEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC-------CCce-----------ee
Q 024407 69 IARDP--ADQG-G--ESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTE-------TGKL-----------LK 124 (268)
Q Consensus 69 ~~~~~--~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~-------~~~~-----------~~ 124 (268)
+.+.. .... . ..+..++ ....++++|+++ .+++-..++.|..+|+. ++.. ..
T Consensus 226 i~r~~~G~~~~~~~~~~v~~~~----~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~ 301 (496)
T 3kya_A 226 IKRNADGTFDDRSDIQLIAAYK----QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFK 301 (496)
T ss_dssp EECCTTSCCSTTSCEEEEEEES----CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEE
T ss_pred EecCCCCceeecccceeeccCC----CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccc
Confidence 22211 1110 1 1222221 234678899554 55666788889999987 5543 11
Q ss_pred ecccccCcccceEEEEEcCCCCE-EEEeeCCCcEEEEEC
Q 024407 125 ESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDA 162 (268)
Q Consensus 125 ~~~~~~~h~~~v~~v~~s~~~~~-l~s~~~d~~i~iwd~ 162 (268)
.+... +.......++++|+++. +++=+..+.|+.+|.
T Consensus 302 ~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 302 QLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp EEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 11111 11234578999999995 455567788988654
No 295
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.18 E-value=4 Score=33.16 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEECCCcc-eeeeee----cCCceeEEEEccC---CCeEEEe
Q 024407 135 TITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTYV----TERPVNAVTMSPL---LDHVVLG 192 (268)
Q Consensus 135 ~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~----~~~~~~~~~~~~~---~~~~~~~ 192 (268)
....+++.|++.+++ +..++.|.++|. .++ .+..+. .+.....++++|. +..+.++
T Consensus 30 ~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp CEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 356788999997554 455699998874 333 222211 1235778899986 4555554
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=91.05 E-value=5 Score=32.00 Aligned_cols=70 Identities=4% Similarity=-0.007 Sum_probs=44.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEEC
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 162 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~ 162 (268)
.+.++.+.|++..+++ +.++.| ++..+.++....+......+..+..+.+..+ ..+++++.+|.|.-++-
T Consensus 251 ~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~-~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 251 GFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP-DQGFILGQKGILLRYVT 320 (327)
T ss_dssp CEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET-TEEEEECSTTEEEEECC
T ss_pred ceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC-CceEEEcCCceEEEEcC
Confidence 5788888887766555 457776 4555656655444322223456777888644 45777788898776653
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=90.97 E-value=5.5 Score=32.37 Aligned_cols=170 Identities=11% Similarity=0.185 Sum_probs=94.4
Q ss_pred CCceEEEEecCCCCeEEEEEcC----CCCE--E-E-EEeC--CCcEEEEEC--CCCceeeecccc--c-Ccc-cceEEEE
Q 024407 77 GGESVLILKGPQGRINRAVWGP----LNRT--I-I-SAGE--DAIVRIWDT--ETGKLLKESDKE--T-GHK-KTITSLA 140 (268)
Q Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~----~~~~--l-~-s~~~--dg~i~iwd~--~~~~~~~~~~~~--~-~h~-~~v~~v~ 140 (268)
.++.++.+.+ +.++.+..-| .|+. + + +.-. +++|++|++ .+++ +..+... . +.. ..+..++
T Consensus 58 ~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlc 134 (355)
T 3amr_A 58 DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFT 134 (355)
T ss_dssp TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEE
T ss_pred CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEE
Confidence 4556666643 4555555444 2332 2 3 3334 689999966 3433 3333110 0 011 3455566
Q ss_pred E--cCC-CC-EEEEeeCCCcEEEEEC-------CCcceeeeeecCCceeEEEEccCCCeEEEeecCCCceEEEeccC--C
Q 024407 141 K--AAD-GS-HFLTGSLDKSAKLWDA-------RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR--A 207 (268)
Q Consensus 141 ~--s~~-~~-~l~s~~~d~~i~iwd~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~ 207 (268)
+ ++. +. ++++...++.+..|++ .+.+.++++....++..+...+....++++--. .-|+..+.. .
T Consensus 135 ly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd--~GIw~~da~p~~ 212 (355)
T 3amr_A 135 LYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED--EAIWKFSAEPDG 212 (355)
T ss_dssp EEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT--TEEEEEECSTTS
T ss_pred EEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc--ceEEEEeCCcCC
Confidence 6 664 43 6778888899999988 234667777777788888888876666665333 236655532 1
Q ss_pred ---CeeeeEeeehhhhhhhccccccc-cceEEEEE--CCCCC-eEEeee-CCCeEEEEeeCCC
Q 024407 208 ---GKFEAKFFDKILQEEIGGVKGHF-GPINALAF--NPDGK-SFSSGG-EDGYVRLHHFDPD 262 (268)
Q Consensus 208 ---~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~--sp~~~-~lasgs-~Dg~i~i~~~~~~ 262 (268)
+..... +. .++. ..+..|++ .++++ ||+..+ .+.+..||+.+..
T Consensus 213 ~~~~~~v~~-~~----------~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 213 GSNGTVIDR-AD----------GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp CSCCEEEEE-BS----------SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CCCceEEEE-ec----------CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence 111111 00 0111 24566666 66666 555444 6778999988743
No 298
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.33 E-value=6.3 Score=31.98 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce--eeee-----ecCCceeEEEEccC
Q 024407 135 TITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTY-----VTERPVNAVTMSPL 185 (268)
Q Consensus 135 ~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~-----~~~~~~~~~~~~~~ 185 (268)
..+.+++.|++.++++--..|.|++++..+++. +..+ ..+.....++++|+
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 456899999998777776689999998765543 2111 11345678899884
No 299
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=90.31 E-value=5.9 Score=31.58 Aligned_cols=156 Identities=12% Similarity=0.155 Sum_probs=80.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCC
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRI-WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~ 164 (268)
+....+..+.+.|+++.++.+ .+|.+.. .|- .++....+. ......+..+++.+++..+ .++.+|.+.+.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~-gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEP-GQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDN 234 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEE-TTSSEEEEECT-TCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTE
T ss_pred CCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCC-CCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCC
Confidence 445578889999988877655 4455443 332 123322222 1244577888888887654 555678877764332
Q ss_pred cceeeeee-----cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEEC
Q 024407 165 LELIKTYV-----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 239 (268)
Q Consensus 165 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 239 (268)
++.-..+. ....+..+.+.+.+ .+++++. ++......|... .|.... ....+...+.++.|.
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g~-~g~i~~S~DgG~------tW~~~~-----~~~~~~~~~~~v~~~ 301 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPN-EVWLAGG-AGALLCSQDGGQ------TWQQDV-----DVKKVPSNFYKILFF 301 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSS-CEEEEES-TTCEEEESSTTS------SCEECG-----GGTTSSSCCCEEEEE
T ss_pred CCeeEeccCCcccCCcceEEEEecCCC-EEEEEeC-CCeEEEeCCCCc------ccEEcC-----ccCCCCCCeEEEEEE
Confidence 33222221 11235677777653 3444433 232333333211 111110 000123457788887
Q ss_pred CCCCeEEeeeCCCeEEEEeeCCC
Q 024407 240 PDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 240 p~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
++++.+ .++.+|.| ++++++
T Consensus 302 ~~~~~~-~~G~~G~i--~~~~~~ 321 (327)
T 2xbg_A 302 SPDQGF-ILGQKGIL--LRYVTD 321 (327)
T ss_dssp ETTEEE-EECSTTEE--EEECCC
T ss_pred CCCceE-EEcCCceE--EEEcCc
Confidence 666544 45668865 455543
No 300
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=90.20 E-value=7.5 Score=32.61 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=76.3
Q ss_pred CcEEEeecCCCcEEEEEecC----C-CceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCC------CceEEEE
Q 024407 16 QTAKLWNVETGAQLFTFNFD----S-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG------GESVLIL 84 (268)
Q Consensus 16 ~tv~~wd~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 84 (268)
+.||.=++.+...-+.+... . .+..+..+|.+.++++.++. .+.+-.++....... ......+
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~------~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN------EIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS------EEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC------eEEEEEecCccccCcccccccccceeEE
Confidence 55655566644332333332 2 46677788877666555432 223333331110010 0112222
Q ss_pred ec------CCCCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceee-eccc------ccCcccceEEEEEcCCCCEE
Q 024407 85 KG------PQGRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLK-ESDK------ETGHKKTITSLAKAADGSHF 148 (268)
Q Consensus 85 ~~------~~~~v~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~-~~~~------~~~h~~~v~~v~~s~~~~~l 148 (268)
.- ...+|..+.|+|.+ ..|++-..|+.||+||+....... .+.. .......|.+++|..++-.|
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTL 194 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTL 194 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCE
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEE
Confidence 21 35789999999975 478999999999999998632111 1211 11223567888898877766
Q ss_pred EEee--CCCcEEE
Q 024407 149 LTGS--LDKSAKL 159 (268)
Q Consensus 149 ~s~~--~d~~i~i 159 (268)
...+ ..|-|.-
T Consensus 195 Yvl~~t~~GDIYA 207 (452)
T 3pbp_A 195 YCLNTTEGGDIFA 207 (452)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEecCCCCCEEE
Confidence 6644 6666643
No 301
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.47 E-value=7.4 Score=31.55 Aligned_cols=82 Identities=12% Similarity=0.010 Sum_probs=50.1
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--eecc-cccCcccceEEEEEcCC----CCEEEEe--eC
Q 024407 83 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESD-KETGHKKTITSLAKAAD----GSHFLTG--SL 153 (268)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~-~~~~h~~~v~~v~~s~~----~~~l~s~--~~ 153 (268)
.+...-.....++|.|+|+.+++--..|.|++++..+++.. ..+. ....-......++++|+ +...++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 34444456688999999998777655899999987655432 1111 11122456789999985 4444432 24
Q ss_pred CCcEEEEECCC
Q 024407 154 DKSAKLWDART 164 (268)
Q Consensus 154 d~~i~iwd~~~ 164 (268)
++.|.-|.+..
T Consensus 106 ~~~v~R~~~~~ 116 (347)
T 3das_A 106 DNRIVRMLYDE 116 (347)
T ss_dssp SEEEEEEEBCT
T ss_pred CCEEEEEEeCC
Confidence 55666665543
No 302
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=89.25 E-value=8.3 Score=31.80 Aligned_cols=186 Identities=9% Similarity=-0.015 Sum_probs=97.2
Q ss_pred EEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecC
Q 024407 8 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 87 (268)
Q Consensus 8 ~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (268)
+|+.+ ....|+.-++...........-..+..++|.+....+.++... ...+....+.. ..........+...
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~----~~~I~~~~~~g--~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS----QRMICSTQLDR--AHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETT----TTEEEEEEC--------CCCEEEECSS
T ss_pred eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecC----CCeEEEEEccc--CCCCCcceEEEeCC
Confidence 34433 3468888888776554444444556777887644333332111 01111111110 00001122333334
Q ss_pred CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee-C-CCcEEEEECCC
Q 024407 88 QGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-L-DKSAKLWDART 164 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~-d~~i~iwd~~~ 164 (268)
......+++.+.++.| ++-...+.|.+.|++.......+. ..-.....+++.|.+..|..+. . .+.|...++..
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 4567788888855544 555677889999987543322221 1123467889998655554443 2 47888888875
Q ss_pred cceeeeeecC-CceeEEEEccCCCeEEEeecCCCceEEEec
Q 024407 165 LELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTD 204 (268)
Q Consensus 165 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 204 (268)
.......... ...+.+++++..+.+..+-.. ...|...|
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~-~~~I~~~d 274 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSID 274 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEE
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEECC-CCEEEEEe
Confidence 4322211111 357889999877766665332 23344444
No 303
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=88.94 E-value=8 Score=31.19 Aligned_cols=165 Identities=7% Similarity=-0.070 Sum_probs=87.2
Q ss_pred CCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEE
Q 024407 15 DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 94 (268)
Q Consensus 15 D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 94 (268)
...|+..++..............+..++|.+....+.++... .. .+.++.. .++.....+.........+
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~----~~--~I~r~~~----~g~~~~~~~~~~~~~p~gl 121 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT----LD--RILRANL----NGSNVEEVVSTGLESPGGL 121 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETT----TT--EEEEEET----TSCSCEEEECSSCSCCCEE
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEecc----CC--ceEEEec----CCCCceEEEeCCCCCccEE
Confidence 346777777665444333333445677777543333322111 01 1111111 1112222233233445678
Q ss_pred EEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCE-EEEeeCC-CcEEEEECCCcceeeee
Q 024407 95 VWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLD-KSAKLWDARTLELIKTY 171 (268)
Q Consensus 95 ~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~~~d-~~i~iwd~~~~~~~~~~ 171 (268)
++.+.++.| ++-...+.|.+.++..... ..+.. ..-.....++++|.+.. +++-... +.|..+++..... ..+
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~--~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~ 197 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLW--QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RII 197 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC--TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EES
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEe--CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEE
Confidence 888866554 5556778899999875432 22211 12234578899985554 4455455 7888888875332 222
Q ss_pred ec--CCceeEEEEccCCCeEEEee
Q 024407 172 VT--ERPVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 172 ~~--~~~~~~~~~~~~~~~~~~~~ 193 (268)
.. -...+.++++|.++.+..+-
T Consensus 198 ~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 198 ADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp CCSSCSCEEEEEEETTTTEEEEEE
T ss_pred EECCCCCcceEEEeCCCCEEEEEE
Confidence 11 22467899998767666553
No 304
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=88.53 E-value=14 Score=33.62 Aligned_cols=169 Identities=10% Similarity=-0.014 Sum_probs=88.0
Q ss_pred cCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEE
Q 024407 14 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 93 (268)
Q Consensus 14 ~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 93 (268)
....|+..++..............+..+++.+....+.++.... ..+....+.. ....+.....+.........
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~----~~I~~~~l~g--~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ----RMICSTQLDR--AHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTT----TEEEEEEC----------CEEEECSSCSCCCE
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccc----eeEEEEeccC--CCCCcceeEEEecCCCCcce
Confidence 33567777776554433333334455666665333322221110 1111111110 00001223334434456678
Q ss_pred EEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee-CC-CcEEEEECCCcceeee
Q 024407 94 AVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LD-KSAKLWDARTLELIKT 170 (268)
Q Consensus 94 ~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d-~~i~iwd~~~~~~~~~ 170 (268)
+++.+.++.| ++-...+.|.+.++..... ..+.. ..-.....|++.|....|..+. .. +.|...++..... ..
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~--~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~ 551 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS 551 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EE
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEe--CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EE
Confidence 8998887655 4556788999999875432 22211 1223467899998755554443 33 6888888875433 22
Q ss_pred eec-C-CceeEEEEccCCCeEEEe
Q 024407 171 YVT-E-RPVNAVTMSPLLDHVVLG 192 (268)
Q Consensus 171 ~~~-~-~~~~~~~~~~~~~~~~~~ 192 (268)
+.. . .....+++.+..+.+..+
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwa 575 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWV 575 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEeCCCCCceEEEEecCCCeEEEE
Confidence 222 1 357788888776666655
No 305
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=87.96 E-value=9.4 Score=30.84 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=56.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---eeccc-ccCcccceEEEEEcCC----CCEEEEeeC-------C
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL---KESDK-ETGHKKTITSLAKAAD----GSHFLTGSL-------D 154 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~-~~~h~~~v~~v~~s~~----~~~l~s~~~-------d 154 (268)
....++|.|+|++|+.+...|.|++++.. ++.. ..+.. ..........++++|+ +...++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45789999999834445678999999853 3221 11110 0112345688999995 444444332 2
Q ss_pred CcEEEEECCCc----ceeeee----e----cCCceeEEEEccCCCeEEEeecC
Q 024407 155 KSAKLWDARTL----ELIKTY----V----TERPVNAVTMSPLLDHVVLGGGQ 195 (268)
Q Consensus 155 ~~i~iwd~~~~----~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~ 195 (268)
..|.-|++... ...+.+ . ..+....+.+.|++ .+.++.++
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd 149 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGE 149 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECC
Confidence 35666665432 111111 1 01224578888876 55555443
No 306
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=87.60 E-value=12 Score=31.58 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=36.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEECCCcce--eeeee-------cCCceeEEEEccC---CCeEEEe
Q 024407 135 TITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYV-------TERPVNAVTMSPL---LDHVVLG 192 (268)
Q Consensus 135 ~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-------~~~~~~~~~~~~~---~~~~~~~ 192 (268)
..+.+++.|+|.++++--..+.|++++..+++. +..+. .+.....++++|+ ...+.++
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 346899999998777655545788888654432 22221 1234568999985 4555544
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=84.94 E-value=14 Score=29.87 Aligned_cols=104 Identities=11% Similarity=-0.011 Sum_probs=58.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeecccccCcccceEEEEEcCC----CCEEEEeeC---C----C
Q 024407 88 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD----GSHFLTGSL---D----K 155 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~~----~~~l~s~~~---d----~ 155 (268)
-.....++|.|+|+.++ +..+|.|+++|. +++ .+..+.....-......++++|+ +...++-+. + +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34567899999998555 456699999973 444 22221111112345789999997 444444332 3 5
Q ss_pred cEEEEECCCc-------cee-eeeec--CCceeEEEEccCCCeEEEeec
Q 024407 156 SAKLWDARTL-------ELI-KTYVT--ERPVNAVTMSPLLDHVVLGGG 194 (268)
Q Consensus 156 ~i~iwd~~~~-------~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~ 194 (268)
.|..|++... +.+ ..+.. .+....+.+.|++. +.++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEEC
Confidence 6777776543 111 11111 12346688888764 444433
No 308
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=84.74 E-value=20 Score=31.39 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=49.1
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEECCCC------ce-------eeecccccCcccceEEEEEcCCCCEEEEeeCCCcE
Q 024407 92 NRAVWGPLNRTIISAG-EDAIVRIWDTETG------KL-------LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 157 (268)
Q Consensus 92 ~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~------~~-------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 157 (268)
..+..+|||++++.++ .+.++-++|.+.- +. ..+.. -.......+|.++|+-..|-..|..|
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e----~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE----LGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB----CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc----CCCcccEEEECCCCceEeeeeecceE
Confidence 4678899999886554 7899999998741 11 11111 12335567899999666777899999
Q ss_pred EEEECCC
Q 024407 158 KLWDART 164 (268)
Q Consensus 158 ~iwd~~~ 164 (268)
.-|++..
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999864
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=84.71 E-value=15 Score=29.92 Aligned_cols=141 Identities=7% Similarity=0.086 Sum_probs=74.1
Q ss_pred cCCcEEEeecCCC-cEEEEEecC--------CCceeeeeec--CCe-EEEEEcCCCcccccceEeeeeeeCCCCCCCceE
Q 024407 14 ADQTAKLWNVETG-AQLFTFNFD--------SPARSVDFAV--GDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESV 81 (268)
Q Consensus 14 ~D~tv~~wd~~~~-~~~~~~~~~--------~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (268)
.+|.|-++|+++. .....+... -.++.+.+.+ ++. .+.+.+... -...+.+.++.... .....+
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~--~~s~ielf~~d~~~--~~~~~~ 156 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG--SSSTVEVFKFQEEE--KSLLHL 156 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST--TCCEEEEEEEETTT--TEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC--CCCeEEEEEEECCC--CEEEEE
Confidence 7899999999742 112233321 2456666655 222 233332211 12233344333210 111223
Q ss_pred EEEecC-CCCeEEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCceeeecccccCcccceEEEEEcC
Q 024407 82 LILKGP-QGRINRAVWGPLNRTIISAG-----------------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 143 (268)
Q Consensus 82 ~~~~~~-~~~v~~~~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 143 (268)
..+.+. -...+++.+.++|+..++.. ..|.|.-+|. ++. ..+. ..-..-+.++++|
T Consensus 157 ~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~---~~l~~pNGia~sp 230 (355)
T 3sre_A 157 KTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVA---EGFDFANGINISP 230 (355)
T ss_dssp EEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEE---EEESSEEEEEECT
T ss_pred eccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEee---cCCcccCcceECC
Confidence 334433 24578999999998777654 1244555554 221 1111 1124567899999
Q ss_pred CCCEEEEe-eCCCcEEEEECCC
Q 024407 144 DGSHFLTG-SLDKSAKLWDART 164 (268)
Q Consensus 144 ~~~~l~s~-~~d~~i~iwd~~~ 164 (268)
|++.|..+ +..++|..||+..
T Consensus 231 Dg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 231 DGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TSSEEEEEEGGGTEEEEEEECT
T ss_pred CCCEEEEEeCCCCeEEEEEECC
Confidence 99876654 5678899999863
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=83.87 E-value=16 Score=29.62 Aligned_cols=229 Identities=11% Similarity=0.124 Sum_probs=128.5
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
+|..+.+|-=. -.+++++|+++...+..+..++++....|.....++++... .+.-|.+.. ...|..
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~t-------aVyHWs~~~-----~s~P~k 141 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDN-------AVYHWSMEG-----ESQPVK 141 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESS-------EEEEEESST-----TCCCEE
T ss_pred CCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCC-------cEEEEcccC-----CCCCce
Confidence 57777777665 57999999999999999999999999999887777766532 333343321 345666
Q ss_pred EEecCC----CCeEEEEEcCCCCEEEEEe---CC----CcEEEEECCCCceeeecccccCcccceEEEEEcCC---CCEE
Q 024407 83 ILKGPQ----GRINRAVWGPLNRTIISAG---ED----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD---GSHF 148 (268)
Q Consensus 83 ~~~~~~----~~v~~~~~~~~~~~l~s~~---~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~---~~~l 148 (268)
.+.-|. ..|....-+++.++++..| .+ |.+.+|..+.+.. +. .+||-+.-..+.+..+ ...+
T Consensus 142 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q~--ieGhaa~F~~~~~~g~~~~~~lf 217 (365)
T 2xzh_A 142 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QP--IEGHAASFAQFKMEGNAEESTLF 217 (365)
T ss_dssp EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE--EE--ECCSEEEEEEECCTTCSSCEEEE
T ss_pred eeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc--ce--eeeeeeeeEEEecCCCCCCceEE
Confidence 665552 3466667788888764333 23 5677888776432 11 2356443333322211 1123
Q ss_pred EEeeC---CCcEEEEECCCc---c-ee-----eeeec----CCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeee
Q 024407 149 LTGSL---DKSAKLWDARTL---E-LI-----KTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 212 (268)
Q Consensus 149 ~s~~~---d~~i~iwd~~~~---~-~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 212 (268)
+-+.. .+.+.+-++... . .. .-+.. ..-..++..++-.+.+.+-.. .+.+..+|..++....
T Consensus 218 ~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK--~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 218 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--YGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET--TSEEEEEETTTCCEEE
T ss_pred EEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC--CcEEEEEEcccCcEEE
Confidence 32222 257888887432 1 11 10111 223455666665555554433 3456666766655421
Q ss_pred EeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+. -.++|..-+.++...-++.....|.|.--.++.+
T Consensus 296 --~nrI----------S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 296 --MNRI----------SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp --EEEC----------CSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred --Eecc----------CCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 1111 1234555555555455665667787765556544
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=83.72 E-value=13 Score=28.71 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=35.9
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC-----CcEEEEECCCcce
Q 024407 99 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLEL 167 (268)
Q Consensus 99 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~ 167 (268)
+++.++.||.+ ..+.+||+.+.+-.. +.........-..+. .++..++.++.+ ..+..||+.+.+-
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM-LGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEE-EEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEE-CCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 45666667644 368899988765322 111111111111222 256677777654 4588899887643
No 312
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=83.17 E-value=24 Score=31.11 Aligned_cols=160 Identities=9% Similarity=0.019 Sum_probs=84.3
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EEEEeeCCCcEEEEECCCc
Q 024407 88 QGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTL 165 (268)
Q Consensus 88 ~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~iwd~~~~ 165 (268)
-+....++|++.++.|+ +=...+.|..+++........+.. .--.....+++.+.+. .+++-...+.|.+.++...
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~--~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe--CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 34567889998776665 445567888888865421111111 1113567899988554 5556667889999998764
Q ss_pred ceeeeee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCC
Q 024407 166 ELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 243 (268)
Q Consensus 166 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 243 (268)
.. ..+. .-.....+++.|..+.++.+--.....+...+.. |.....+. .......+.|+++++++
T Consensus 117 ~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~-----------~~~~~~P~Glald~~~~ 183 (619)
T 3s94_A 117 LR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII-----------NSEIYWPNGLTLDYEEQ 183 (619)
T ss_dssp SC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEE-----------CSSCSSEEEEEEETTTT
T ss_pred CE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEE-----------eCCCCCCcEEEEEccCC
Confidence 32 2222 2234667888887666555431111222222111 11000010 01123457899998655
Q ss_pred eE-EeeeCCCeEEEEeeCCC
Q 024407 244 SF-SSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 244 ~l-asgs~Dg~i~i~~~~~~ 262 (268)
.| .+=...+.|....+++.
T Consensus 184 ~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 184 KLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp EEEEEETTTCCEEEESSSCC
T ss_pred EEEEEeCCCCeEEEecCCCC
Confidence 44 44445566777666654
No 313
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=81.97 E-value=17 Score=28.65 Aligned_cols=167 Identities=10% Similarity=0.002 Sum_probs=89.1
Q ss_pred CcEEEeecCCCcEEEEEecCCCceeeeeecCC-eEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCeEEE
Q 024407 16 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 94 (268)
Q Consensus 16 ~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 94 (268)
..|+..|+........+..-..+..+++.+.. .+..+... ...+....... ..........+...-.....+
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g--~~~~~~~~~~~~~~~~~p~gl 82 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDR--AHGVSSYDTVISRDIQAPDGL 82 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC----------CEEEECSSCSCCCEE
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECC-----CCcEEEEECCC--CCCCcccEEEEeCCCCCcCEE
Confidence 47899999887655544444456777787643 43333221 11111111110 000011122233333455788
Q ss_pred EEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC-C-CcEEEEECCCcceeeee
Q 024407 95 VWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-D-KSAKLWDARTLELIKTY 171 (268)
Q Consensus 95 ~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d-~~i~iwd~~~~~~~~~~ 171 (268)
++++.++.| ++-...+.|.++|+..... ..+.. ..-.....++++|.+..|..+.. . +.|...++.... ...+
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~--~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~ 158 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL 158 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEE
T ss_pred EEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEE--CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEE
Confidence 888766555 5556788999999875432 22211 11234578899986555544433 3 688888876432 2222
Q ss_pred e--cCCceeEEEEccCCCeEEEee
Q 024407 172 V--TERPVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 172 ~--~~~~~~~~~~~~~~~~~~~~~ 193 (268)
. .-...+.+++++.++.+..+-
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EECCCCCceEEEEeccCCEEEEEE
Confidence 2 123567889998777666554
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=81.05 E-value=29 Score=30.64 Aligned_cols=158 Identities=7% Similarity=-0.005 Sum_probs=87.9
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCC-EEEEeeCCCcEEEEECCCcc
Q 024407 89 GRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLE 166 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~iwd~~~~~ 166 (268)
.....++|++.++.|+ +-..++.|..+++........+.. + ......+++.+.+. .+++-...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~--g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF--G-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--S-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC--C-CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence 4567889998776654 556788999998875432222211 1 12355788886544 45566667889999987543
Q ss_pred eeeeee--cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCe
Q 024407 167 LIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 244 (268)
Q Consensus 167 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 244 (268)
. ..+. .-.....++..|..+.++.+--.....|...+...... ..+. ......+.|+++++++.
T Consensus 114 ~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~------------~~~~~P~GlalD~~~~~ 179 (628)
T 4a0p_A 114 R-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLV------------PNVGRANGLTIDYAKRR 179 (628)
T ss_dssp C-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE------------CSCSSEEEEEEETTTTE
T ss_pred E-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEE------------CCCCCcceEEEccccCE
Confidence 2 2222 12346788888866665554311122233222111110 0111 11234567899887655
Q ss_pred EE-eeeCCCeEEEEeeCCCc
Q 024407 245 FS-SGGEDGYVRLHHFDPDY 263 (268)
Q Consensus 245 la-sgs~Dg~i~i~~~~~~~ 263 (268)
|. +=...+.|...++++..
T Consensus 180 LY~aD~~~~~I~~~d~dG~~ 199 (628)
T 4a0p_A 180 LYWTDLDTNLIESSNMLGLN 199 (628)
T ss_dssp EEEEETTTTEEEEEETTSCS
T ss_pred EEEEECCCCEEEEEcCCCCc
Confidence 44 33456677777777653
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.83 E-value=8.3 Score=36.00 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeec
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 126 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 126 (268)
.+.++...++..++++.+.|+++|||++.+++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4566777788889999999999999999999877643
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.58 E-value=3 Score=38.92 Aligned_cols=37 Identities=27% Similarity=0.196 Sum_probs=32.1
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeee
Q 024407 135 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 171 (268)
Q Consensus 135 ~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 171 (268)
.+.+++..++..++++.+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4667777788889999999999999999999888765
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=79.23 E-value=20 Score=27.86 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=35.7
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC-----CcEEEEECCCcce
Q 024407 99 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLEL 167 (268)
Q Consensus 99 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~ 167 (268)
+++.++.||.+ ..+.+||+.+.+-.. +.........-..+.+ ++..++.++.+ ..+..||+.+.+-
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHL-VAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeE-CCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 45666666643 468899998764322 2111111111122222 56666776654 4588899887643
No 318
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=78.62 E-value=15 Score=29.69 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=42.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEE---cCCCCEEEEe-eCCCcEEEEECCCccee
Q 024407 101 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK---AADGSHFLTG-SLDKSAKLWDARTLELI 168 (268)
Q Consensus 101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~---s~~~~~l~s~-~~d~~i~iwd~~~~~~~ 168 (268)
..++.++.||.|.-.|..+|+....+... ...++....- ..++..++.. +.||.|..+|..++...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 36788999999999999999887766532 1122222110 0123334443 68999999998887543
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=76.24 E-value=5.2 Score=30.31 Aligned_cols=69 Identities=7% Similarity=-0.086 Sum_probs=43.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccc-----ccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECC
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
.++++.|+|+|...+. .+|.+.-.+..+......+.. ..+... -.++.|.++|.+.++ .||.|.-++.-
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 5678999998885554 777776666654322111110 001111 367889999988777 66988877763
No 320
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=74.72 E-value=69 Score=31.64 Aligned_cols=105 Identities=10% Similarity=0.154 Sum_probs=67.2
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
+|..+.+|-=+ -.+++++|+++...+.++.++++|..+.|.....++++... .+.-|.+.. ...|+.
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~-------aVyHW~~~~-----~s~P~k 140 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDN-------AVYHWSMEG-----ESQPVK 140 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCC-------eEEEeccCC-----CCccHH
Confidence 56777776665 57999999999888888888889888888877766665432 233333321 223333
Q ss_pred EEecC----CCCeEEEEEcCCCCEEEEEe-------CCCcEEEEECCCC
Q 024407 83 ILKGP----QGRINRAVWGPLNRTIISAG-------EDAIVRIWDTETG 120 (268)
Q Consensus 83 ~~~~~----~~~v~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~ 120 (268)
.+.-| ...|..-.-+++.++++..| -.|.+.+|..+.+
T Consensus 141 ~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred HHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence 33333 23466666677777665332 3367778887654
No 321
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=74.04 E-value=64 Score=30.91 Aligned_cols=73 Identities=14% Similarity=0.008 Sum_probs=46.7
Q ss_pred CCCeEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCceeeecccccCcccceEEEEEc--CCCCEEEEeeCCCcEE
Q 024407 88 QGRINRAVWGPL------NRTIISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKA--ADGSHFLTGSLDKSAK 158 (268)
Q Consensus 88 ~~~v~~~~~~~~------~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~~~l~s~~~d~~i~ 158 (268)
..+|.|+++.|. ++.++.|.+ |++++|+++.+-+.+...... -.....++.+. ....+|..+-.||.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~--~~~~p~si~l~~~~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG--GEIIPRSILMTTFESSHYLLCALGDGALF 630 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC--SSCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC--CCCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence 567999998864 358888887 999999999875554432211 11222233222 2345788888999876
Q ss_pred EEEC
Q 024407 159 LWDA 162 (268)
Q Consensus 159 iwd~ 162 (268)
-+.+
T Consensus 631 ~~~~ 634 (1158)
T 3ei3_A 631 YFGL 634 (1158)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=73.18 E-value=30 Score=26.84 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=34.5
Q ss_pred CCCEEEEEeC----C-----CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC-----CcEEEEECCC
Q 024407 99 LNRTIISAGE----D-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDART 164 (268)
Q Consensus 99 ~~~~l~s~~~----d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~i~iwd~~~ 164 (268)
+++.++.||. + +.+.+||+.+.+-.. +.........-..+. .++..++.++.+ ..+..||+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP-CAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE-CCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE-CCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCC
Confidence 3445555654 2 468899998764322 211111111112222 256666666543 3578899887
Q ss_pred cce
Q 024407 165 LEL 167 (268)
Q Consensus 165 ~~~ 167 (268)
.+.
T Consensus 147 ~~W 149 (308)
T 1zgk_A 147 DEW 149 (308)
T ss_dssp TEE
T ss_pred CeE
Confidence 643
No 323
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.63 E-value=3 Score=39.73 Aligned_cols=38 Identities=26% Similarity=0.174 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeee
Q 024407 135 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 172 (268)
Q Consensus 135 ~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 172 (268)
.+.+++..++..++++-+.|+++|+|++++++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34455566788899999999999999999999887753
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=70.02 E-value=29 Score=27.54 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=21.0
Q ss_pred CcEEEEECCCCceeeeccccc-CcccceEEEEEcCCCCEEEEeeCC
Q 024407 110 AIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGSHFLTGSLD 154 (268)
Q Consensus 110 g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~~~l~s~~~d 154 (268)
+.+.+||+.+.+-.. +.... .-...- +++. .++..++.++.+
T Consensus 86 ~~v~~yd~~~~~W~~-~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVK-LMSHAPMGMAGH-VTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp CCEEEEETTTTEEEE-CSCCCSSCCSSE-EEEE-ETTEEEEEECCC
T ss_pred ccEEEEeCCCCcEEE-CCCCCCcccccc-eEEE-ECCEEEEEeCcC
Confidence 568899998865322 21111 111111 1222 466777777754
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=69.82 E-value=37 Score=26.44 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC------CCcEEEEECCCc
Q 024407 99 LNRTIISAGED-------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTL 165 (268)
Q Consensus 99 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~------d~~i~iwd~~~~ 165 (268)
+++.++.||.+ ..+.+||+.+.+-.. +.........- +++. .++..++.++. -..+..||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 45666677754 357888988764322 21111111111 1111 45666666654 235889999876
Q ss_pred ce
Q 024407 166 EL 167 (268)
Q Consensus 166 ~~ 167 (268)
+-
T Consensus 186 ~W 187 (318)
T 2woz_A 186 DW 187 (318)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 326
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=69.51 E-value=8 Score=34.67 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=26.4
Q ss_pred CCCCEEEEeeCCCcEEEEECCCcceeeeeec
Q 024407 143 ADGSHFLTGSLDKSAKLWDARTLELIKTYVT 173 (268)
Q Consensus 143 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 173 (268)
.+..++++-+.|.++|+|++++++++.....
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3467999999999999999999988776543
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=68.27 E-value=40 Score=26.21 Aligned_cols=66 Identities=21% Similarity=0.171 Sum_probs=35.3
Q ss_pred CCCEEEEEeCC--------CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC------CCcEEEEECCC
Q 024407 99 LNRTIISAGED--------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDART 164 (268)
Q Consensus 99 ~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~------d~~i~iwd~~~ 164 (268)
+++.++.||.+ ..+.+||+.+.+-. .+.........-..+ ..++..++.++. -..+..||+.+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG-ESDPLPYVVYGHTVL--SHMDLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEE--EETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe-ECCCCCCcccceeEE--EECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence 45556666632 45889999886432 222111111111112 235666677765 24688999887
Q ss_pred cce
Q 024407 165 LEL 167 (268)
Q Consensus 165 ~~~ 167 (268)
.+-
T Consensus 175 ~~W 177 (315)
T 4asc_A 175 FEW 177 (315)
T ss_dssp TEE
T ss_pred CeE
Confidence 643
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=67.48 E-value=57 Score=27.64 Aligned_cols=229 Identities=11% Similarity=0.111 Sum_probs=132.0
Q ss_pred CCCCCEEEEeecCCcEEEeecCCCcEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEE
Q 024407 3 QANSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 82 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (268)
+|..+.+|-=. -.+++++|+++...+.++.+++++-.+.|.....++++.. ..+.-|.+.. ...|+.
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~-------taVyHWsi~~-----~s~P~k 140 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD-------NAVYHWSMEG-----ESQPVK 140 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECS-------SEEEEEESSS-----SCCCEE
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcC-------CeeEEecccC-----CCCchh
Confidence 56677777665 5799999999999999999999999999988777766543 2333344321 345666
Q ss_pred EEecCC----CCeEEEEEcCCCCEEEEEe---C----CCcEEEEECCCCceeeecccccCcccceEEEEEcCC---CCEE
Q 024407 83 ILKGPQ----GRINRAVWGPLNRTIISAG---E----DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD---GSHF 148 (268)
Q Consensus 83 ~~~~~~----~~v~~~~~~~~~~~l~s~~---~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~---~~~l 148 (268)
.+.-|. ..|....-+++.++++..| . .|.+.+|..+.+... . .+||-+.-..+....+ ...+
T Consensus 141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--~--ieGhaa~F~~~~~~g~~~~~~lf 216 (494)
T 1bpo_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--P--IEGHAASFAQFKMEGNAEESTLF 216 (494)
T ss_dssp EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE--E--ECCSEEEEEEEECTTCSSEEEEE
T ss_pred heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc--h--heeeeeeeEEEecCCCCCCceEE
Confidence 666552 3466667788888765332 2 366778888765321 1 2366554433333211 1133
Q ss_pred EEeeC---CCcEEEEECCCc----ceeee-----ee----cCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeee
Q 024407 149 LTGSL---DKSAKLWDARTL----ELIKT-----YV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 212 (268)
Q Consensus 149 ~s~~~---d~~i~iwd~~~~----~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 212 (268)
+.+.. .+.+.+-++... ....+ +. ...-..++..++..+.+.+-.. .+.+..+|..++....
T Consensus 217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK--~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--YGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET--TSEEEEEETTTCCEEE
T ss_pred EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec--CceEEEEecccceeee
Confidence 33332 268888887532 11111 11 1223456666776665555433 3456666766655421
Q ss_pred EeeehhhhhhhccccccccceEEEEECCCCCeEEeeeCCCeEEEEeeCCC
Q 024407 213 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~Dg~i~i~~~~~~ 262 (268)
..+. -.++|..-+.++...-++.....|.|.--.++.+
T Consensus 295 --~nrI----------s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 295 --MNRI----------SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp --EEEC----------CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred --eecc----------cCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 1111 1235655555555556666678888765556544
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=67.21 E-value=55 Score=27.43 Aligned_cols=105 Identities=10% Similarity=0.197 Sum_probs=57.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--eeccccc---CcccceEEEEEcCC----CCEEEEeeC------
Q 024407 89 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDKET---GHKKTITSLAKAAD----GSHFLTGSL------ 153 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~---~h~~~v~~v~~s~~----~~~l~s~~~------ 153 (268)
.....++|.|+|+.+++--..+.|++++..+++.. ..+.... .-......++++|+ +...++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45578999999997776544457888876655432 1221110 12356779999995 444444432
Q ss_pred ------CCcEEEEECCCc-------ceeee-ee--cCCceeEEEEccCCCeEEEeec
Q 024407 154 ------DKSAKLWDARTL-------ELIKT-YV--TERPVNAVTMSPLLDHVVLGGG 194 (268)
Q Consensus 154 ------d~~i~iwd~~~~-------~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ 194 (268)
...|.-+++... +.+.. +. ..+....+.+.|++. +.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 234555554321 11111 11 123467889999765 444433
No 330
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=66.97 E-value=9 Score=34.35 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecc
Q 024407 91 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 127 (268)
Q Consensus 91 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 127 (268)
|.++.+ +..++++.+.|.++|+||+++++.+....
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 444444 46799999999999999999998775443
No 331
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=64.68 E-value=51 Score=26.07 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=76.4
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEE-------EEE--ecCCCceeee-eecCCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQL-------FTF--NFDSPARSVD-FAVGDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~-------~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
++...+++.+.+|.||.-.+...+.. ..+ +.+..+..+. ....+.++++...+.........+-...+
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r-- 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR-- 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc--
Confidence 57788999999999999987655321 111 1122222222 23344555555544322222111100000
Q ss_pred CCCCCce---EEEEecCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCce-----eeecccccCcccceEEEEEc
Q 024407 74 ADQGGES---VLILKGPQGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGKL-----LKESDKETGHKKTITSLAKA 142 (268)
Q Consensus 74 ~~~~~~~---~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~v~~s 142 (268)
...|.+ ...++. ...|..+..-+ +..+++..+..|.++...+..-.. ..-+. ... ...+..+...
T Consensus 84 -~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~-L~~-~d~lv~~~~~ 159 (312)
T 1suu_A 84 -ASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIK-LND-KDFVTSAEIV 159 (312)
T ss_dssp -----CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBC-CCT-TCCEEEEEEE
T ss_pred -cCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEe-cCC-CCEEEEEEEe
Confidence 001111 001111 12344333222 356788889999999887743211 11111 112 3455555554
Q ss_pred CCCCEEEEeeCCCcEEEEECCC
Q 024407 143 ADGSHFLTGSLDKSAKLWDART 164 (268)
Q Consensus 143 ~~~~~l~s~~~d~~i~iwd~~~ 164 (268)
.+...++.++.+|.+..+....
T Consensus 160 ~~~~~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 160 FKDEKVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp CTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEeCCCcEEEEEHHH
Confidence 5556788899999998887653
No 332
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.65 E-value=5.3 Score=38.07 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeec
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 126 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 126 (268)
.+.++...++..++++.+.|+++|||++.+++++...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3445566677889999999999999999999877543
No 333
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=64.23 E-value=47 Score=25.58 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=36.0
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeC---------CCcEEEEECC
Q 024407 99 LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---------DKSAKLWDAR 163 (268)
Q Consensus 99 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~---------d~~i~iwd~~ 163 (268)
+++.++.||.+ ..+.+||+.+.+-.. +.........-..+. .++..++.++. -..+..||+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHT-KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe-CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 45666777765 568899998865322 211111111111122 25666666653 3458899998
Q ss_pred Ccce
Q 024407 164 TLEL 167 (268)
Q Consensus 164 ~~~~ 167 (268)
+.+-
T Consensus 178 ~~~W 181 (306)
T 3ii7_A 178 TETW 181 (306)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7643
No 334
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=62.84 E-value=60 Score=26.31 Aligned_cols=137 Identities=18% Similarity=0.116 Sum_probs=81.4
Q ss_pred CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCC
Q 024407 108 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 187 (268)
Q Consensus 108 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (268)
.+..|.|.|+.++..+.... . .-.+.+ -+|..+.++--+ ..++.+||+.+.+.++.+....++.--.|-...
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrp-i-~AdsAI----MnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~- 118 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRP-I-SADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN- 118 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEE-C-CCSEEE----ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSS-
T ss_pred CCCEEEEEECCCCCCccccc-c-ccceee----eCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCC-
Confidence 44468889998865432111 0 112222 256666666554 578999999999888888777777777776543
Q ss_pred eEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeC---C----CeEEEEeeC
Q 024407 188 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE---D----GYVRLHHFD 260 (268)
Q Consensus 188 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~---D----g~i~i~~~~ 260 (268)
.+.+.+. ..+.-|+.....-..+.|++.. .+.+ ..|..-..+++.++++-.|- + |.+.+|..+
T Consensus 119 ~L~lVT~---taVyHWs~~~~s~P~kvFdR~~-----~L~~--~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 119 TVALVTD---NAVYHWSMEGESQPVKMFDRHS-----SLAG--CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp EEEEEES---SEEEEEESSTTCCCEEEEECCG-----GGTT--CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred eEEEEcC---CcEEEEcccCCCCCceeeecch-----hccc--ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec
Confidence 3333332 2466676543333445555422 1221 35667777899998664442 3 556777766
Q ss_pred CC
Q 024407 261 PD 262 (268)
Q Consensus 261 ~~ 262 (268)
.+
T Consensus 189 r~ 190 (365)
T 2xzh_A 189 RK 190 (365)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 335
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=62.72 E-value=50 Score=25.37 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=35.2
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC-------CcEEEEECCCcc
Q 024407 99 LNRTIISAGEDA-----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-------KSAKLWDARTLE 166 (268)
Q Consensus 99 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-------~~i~iwd~~~~~ 166 (268)
+++.++.||.++ .+.+||+.+.+-.. +.........-..+. .++..++.++.+ ..+..||+.+.+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH-VAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEE-ECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEee-cCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 456667777553 57789988765322 211111111111122 256666666542 358889988764
Q ss_pred e
Q 024407 167 L 167 (268)
Q Consensus 167 ~ 167 (268)
-
T Consensus 185 W 185 (302)
T 2xn4_A 185 W 185 (302)
T ss_dssp E
T ss_pred E
Confidence 3
No 336
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=60.60 E-value=57 Score=25.27 Aligned_cols=151 Identities=11% Similarity=-0.007 Sum_probs=74.6
Q ss_pred CCCEEEEeecCCcEEEeecCCCc----EEE--EEecCCCceeeeee-cCCeEEEEEcCCCcccccceEeeeeeeCCCCCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGA----QLF--TFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQG 77 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~----~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (268)
++..++.++.+|.+|.-.+++.. -+. .++.+..+..+... ..+.++++...+.........+..+. ....
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~g---R~a~ 155 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPST---PGAR 155 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCC---TTCC
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcC---CCCC
Confidence 45789999999999999887653 111 11122223222222 23345555544432222111111110 0112
Q ss_pred CceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------eeeecccccCcccceEEEEEcCCCCEEEE
Q 024407 78 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-------LLKESDKETGHKKTITSLAKAADGSHFLT 150 (268)
Q Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~v~~s~~~~~l~s 150 (268)
|.....++. ...|..+...+++..++..+..|.++...+..-+ -+..+ . ....+..+....+...++.
T Consensus 156 Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~--~~~~lv~~~~~~~~~~i~~ 230 (276)
T 3no0_A 156 GVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--G--TKDTLVDLIPIKEEVELLI 230 (276)
T ss_dssp CEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--C--SSSCEEEEEEESSEEEEEE
T ss_pred CEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--c--CCCcEEEEEEeCCCCEEEE
Confidence 333333333 2456665555556788889999999988764321 11111 1 1233444433233345666
Q ss_pred eeCCCcEEE--EECC
Q 024407 151 GSLDKSAKL--WDAR 163 (268)
Q Consensus 151 ~~~d~~i~i--wd~~ 163 (268)
.+.+|.+.. ++..
T Consensus 231 ~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 231 TTKNGKAFYDKINQK 245 (276)
T ss_dssp EETTSCEEEEEEEGG
T ss_pred EcCCCeEEEeeeCHH
Confidence 666676666 6543
No 337
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=59.85 E-value=56 Score=25.02 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=36.9
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC-----CcEEEEECCCcce
Q 024407 99 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLEL 167 (268)
Q Consensus 99 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~ 167 (268)
+++.++.||.+ ..+.+||+.+.+-.. +.........-..+. .++..++.++.+ ..+.+||+.+.+.
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN-VTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEe-CCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 55666777654 468899998864322 211111111111222 256667777654 4688999987654
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=58.91 E-value=56 Score=24.71 Aligned_cols=140 Identities=8% Similarity=-0.045 Sum_probs=70.8
Q ss_pred CCCCEEEEeecCCcEEEeecCCCc------EEEEEecC--CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCC
Q 024407 4 ANSMTLITGSADQTAKLWNVETGA------QLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 75 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
|.+.+|++...| +++.=....+. ....+... ..+..+.++|+..+..+ ..+. ++.+......
T Consensus 2 ~~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~--------Ly~~~~~t~~ 71 (236)
T 1tl2_A 2 GGESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDK--------IYKGTPPTHD 71 (236)
T ss_dssp CCCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTE--------EEEESCCCST
T ss_pred CcceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCe--------EEEECCCCCC
Confidence 455678888888 66544433332 12233221 35678899997766555 2221 1111100000
Q ss_pred CC---CceEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeccc-ccCcc---cceEEEEEcCCCCE
Q 024407 76 QG---GESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-ETGHK---KTITSLAKAADGSH 147 (268)
Q Consensus 76 ~~---~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~---~~v~~v~~s~~~~~ 147 (268)
.. +. ...+- +.-..-..+-|.|+|.+.++ .||.|+-++..+......+.. ..-.+ ..+..|.+.|+|.+
T Consensus 72 ~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L 148 (236)
T 1tl2_A 72 NDNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL 148 (236)
T ss_dssp TCCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE
T ss_pred ccccccc-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE
Confidence 00 00 01110 01111367889999987776 669998887644221111110 00001 35688999999987
Q ss_pred EEEeeCCCcEE
Q 024407 148 FLTGSLDKSAK 158 (268)
Q Consensus 148 l~s~~~d~~i~ 158 (268)
.+.. |+.+.
T Consensus 149 yav~--dg~ly 157 (236)
T 1tl2_A 149 YAVH--GQQFY 157 (236)
T ss_dssp EEEE--TTEEE
T ss_pred EEEe--CCcEE
Confidence 7666 77643
No 339
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=55.01 E-value=1.1e+02 Score=26.85 Aligned_cols=157 Identities=11% Similarity=0.056 Sum_probs=83.5
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcC-CCCEEEEeeCCCcEEEEECCCcc
Q 024407 89 GRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLE 166 (268)
Q Consensus 89 ~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~iwd~~~~~ 166 (268)
..+..++|++.++.|+ +-...+.|+.+++........+. ..-.....+++.. .++.+++-+..+.|.+.++....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~---~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT---AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE---CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 3456788888655554 44567788888876532211111 1113455788886 45556666778899999987543
Q ss_pred eeeeeec--CCceeEEEEccCCCeEEEeecCCCceEEEe--ccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCC
Q 024407 167 LIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTT--DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 242 (268)
Q Consensus 167 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 242 (268)
. ..+.. -.....++..|..+.+..+--.....|... |..... .+. .......+.|++++++
T Consensus 426 ~-~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~---~l~-----------~~~l~~P~GlalD~~~ 490 (619)
T 3s94_A 426 R-KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV---VLV-----------NTSLGWPNGLALDYDE 490 (619)
T ss_dssp C-EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEE-----------CSSCSCEEEEEEETTT
T ss_pred E-EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE---EEE-----------eCCCCCCeeeEEcccC
Confidence 2 23322 235778888886555554421111222221 211111 010 0112345678888765
Q ss_pred CeEEee-eCCCeEEEEeeCCCc
Q 024407 243 KSFSSG-GEDGYVRLHHFDPDY 263 (268)
Q Consensus 243 ~~lasg-s~Dg~i~i~~~~~~~ 263 (268)
+.|.-+ +..+.|....+++..
T Consensus 491 ~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 491 GKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp TEEEEEETTTTEEEEEESSSCC
T ss_pred CEEEEEECCCCEEEEEecCCCc
Confidence 544433 344667776666553
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=53.77 E-value=78 Score=24.79 Aligned_cols=87 Identities=7% Similarity=-0.134 Sum_probs=42.4
Q ss_pred EEcCCCCEEEEEeC--------------CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee--C--CCc
Q 024407 95 VWGPLNRTIISAGE--------------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--L--DKS 156 (268)
Q Consensus 95 ~~~~~~~~l~s~~~--------------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~--~--d~~ 156 (268)
-+++++++|+-+.. ...|+..++...+. ..+. ... +..++++++.|+-+. . +..
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~-----~~~--~~~~s~~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLD-----PDP--CIYASLIGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEE-----CSC--EEEEEEETTEEEEEEESSSSCEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEee-----cCC--ccEEEEeCCEEEEEeecCCCCce
Confidence 45677877765543 24577777766542 1221 111 124566777777554 2 334
Q ss_pred EEEEECCCcceeeeeecCCceeEEEEccCCCeEEEee
Q 024407 157 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 157 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (268)
|..-++...+ ...+.... . ..+++.++.+..+.
T Consensus 131 Iy~~~~dGs~-~~~lt~~~-~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 131 LYRIRIDGEE-KKKIKNHY-L--FTCNTSDRYFYYNN 163 (302)
T ss_dssp EEEEETTSCC-CEEEESSC-C--CCSEEETTEEEEEC
T ss_pred EEEEECCCCC-eEEEeCCC-c--eEeeEECCEEEEEe
Confidence 5555554332 22222221 1 23455566655543
No 341
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=53.47 E-value=85 Score=25.10 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=41.6
Q ss_pred CCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee-CCCcE
Q 024407 89 GRINRAVWGP-------LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSA 157 (268)
Q Consensus 89 ~~v~~~~~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i 157 (268)
.....+.|.. +|.++++.-..+.|...++..++..............+..+++.|||.++++.. .++.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 4566777753 456667666778888888776543322111112234688999999998666533 34433
No 342
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.94 E-value=70 Score=28.03 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=37.3
Q ss_pred EEEEEcCCCCEEEEEeCC------------CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEe
Q 024407 92 NRAVWGPLNRTIISAGED------------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 151 (268)
Q Consensus 92 ~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 151 (268)
-.++|+|.|+++++--.+ +.+.+.+..+++..+.+.. .-.+.++.+.|+||+..|...
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~--P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC--CTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC--CCCccCcCeeECCCCCEEEEE
Confidence 457899999977654322 2355666666665443321 235789999999998776554
No 343
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=50.60 E-value=82 Score=24.10 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=35.8
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC-----CcEEEEECCCcc
Q 024407 99 LNRTIISAGED-------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE 166 (268)
Q Consensus 99 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~i~iwd~~~~~ 166 (268)
+++.++.||.+ ..+.+||+.+.+-.. +.........-..+. .++..++.++.+ ..+.+||+.+.+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY-IAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE-CCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 45556666543 458899998764322 111111111111222 256677777654 368899998764
Q ss_pred e
Q 024407 167 L 167 (268)
Q Consensus 167 ~ 167 (268)
-
T Consensus 232 W 232 (302)
T 2xn4_A 232 W 232 (302)
T ss_dssp E
T ss_pred E
Confidence 3
No 344
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=50.33 E-value=91 Score=24.52 Aligned_cols=76 Identities=4% Similarity=-0.151 Sum_probs=48.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEE-EEeeCCCcEEEEEC
Q 024407 86 GPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDA 162 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~iwd~ 162 (268)
........++++|.++.|+.+. ..+.|...++.... ...+.. ..-.....+++++++..| ++=+..+.|..+|+
T Consensus 119 ~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~--~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 119 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEE--CCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 3445668899999777665554 35788888876422 222211 112345789999866555 45566788999998
Q ss_pred CC
Q 024407 163 RT 164 (268)
Q Consensus 163 ~~ 164 (268)
..
T Consensus 196 dG 197 (318)
T 3sov_A 196 DG 197 (318)
T ss_dssp TS
T ss_pred CC
Confidence 74
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=50.33 E-value=1.3e+02 Score=26.39 Aligned_cols=99 Identities=7% Similarity=-0.025 Sum_probs=57.5
Q ss_pred cEEEeecCC----C-cEEEEEecCCCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeC-----CCC-CCCceEEEEe
Q 024407 17 TAKLWNVET----G-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD-----PAD-QGGESVLILK 85 (268)
Q Consensus 17 tv~~wd~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~ 85 (268)
.|++-|... + ...+.+.....++.+.++|+++.++++.. +...+.+.++... ... .....+..-.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK----LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~ 374 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK----LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP 374 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT----TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC----CCCeEEEEEeehhhhhhhccccCcccceEeec
Confidence 467777655 2 34556667778899999998887777653 2222333222210 000 0001111111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 024407 86 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 119 (268)
Q Consensus 86 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 119 (268)
.-........|.++|....|.--|..|.-|++..
T Consensus 375 e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 375 ELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cCCCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 1223456789999995556667999999999865
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=47.83 E-value=1.5e+02 Score=26.35 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=71.8
Q ss_pred CCCCEEEEEeCC----CcEEEEECCCCceeeec-c----cccCcccceEEEEEcCCCCEEEEeeCCC------cEEEEEC
Q 024407 98 PLNRTIISAGED----AIVRIWDTETGKLLKES-D----KETGHKKTITSLAKAADGSHFLTGSLDK------SAKLWDA 162 (268)
Q Consensus 98 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~----~~~~h~~~v~~v~~s~~~~~l~s~~~d~------~i~iwd~ 162 (268)
.++..++.||.+ ..+.+||..+++..... . ....-...-..+.+..++..++.|+.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 345666777753 46889998886533211 1 0011111122222322677777776433 4778998
Q ss_pred CCcceee--eeecCCceeEEEEccCCCeEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECC
Q 024407 163 RTLELIK--TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 240 (268)
Q Consensus 163 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 240 (268)
.+.+... .+..++.-.+.+....+..+++++......+..+|.....+....-. ..+......-.++.+..
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~-------g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK-------DEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS-------SGGGGSCCBSCEEEEET
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC-------CCCCCcccceeEEEEeC
Confidence 8754322 11222222223332233344444322222456666665544321100 00111111223355555
Q ss_pred C-CCeEEeeeC--CC-----eEEEEeeCCC
Q 024407 241 D-GKSFSSGGE--DG-----YVRLHHFDPD 262 (268)
Q Consensus 241 ~-~~~lasgs~--Dg-----~i~i~~~~~~ 262 (268)
+ ++.++.||. ++ .+.+|+...+
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 5 677777775 32 3555555544
No 347
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=47.42 E-value=1.1e+02 Score=24.45 Aligned_cols=110 Identities=11% Similarity=0.060 Sum_probs=57.7
Q ss_pred CCCEEEEeecCCcEEEeecCCCcEE-----E--EEecCCCceeeeee-cCCeEEEEEcCCCcccccce--EeeeeeeCCC
Q 024407 5 NSMTLITGSADQTAKLWNVETGAQL-----F--TFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAI--HVKRIARDPA 74 (268)
Q Consensus 5 d~~~l~s~s~D~tv~~wd~~~~~~~-----~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 74 (268)
++..++.++.+|.+|.-.+...... . .++.+..+..+... ..+.++++.+.+........ .+..+.+
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr--- 184 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGR--- 184 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCT---
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCc---
Confidence 4678999999999999987654321 1 11222333333222 33455555554432222211 1111100
Q ss_pred CCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 024407 75 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 118 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 118 (268)
...|.....|. ....|..+...+.+..++.++..|.++.-.+.
T Consensus 185 ~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 185 ATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp TSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred CCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 01222222232 23456666665666788999999999988764
No 348
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=41.89 E-value=28 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.575 Sum_probs=15.8
Q ss_pred CCeEEeeeCCCeEEEEeeCCC
Q 024407 242 GKSFSSGGEDGYVRLHHFDPD 262 (268)
Q Consensus 242 ~~~lasgs~Dg~i~i~~~~~~ 262 (268)
...|+.-- ||+|+||+++++
T Consensus 29 ~nhFgv~e-~g~iKIykyde~ 48 (72)
T 3kvp_A 29 HNHFGVME-DGYIKIYEYNES 48 (72)
T ss_dssp TTEEEEEE-TTEEEEEEEETT
T ss_pred CCEEEEEe-CCEEEEEEeCCC
Confidence 45566655 899999999987
No 349
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=40.68 E-value=1.8e+02 Score=25.40 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=39.0
Q ss_pred CeEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEe
Q 024407 90 RINRAVWGPLNRTIISAGE------------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 151 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 151 (268)
....+.|+++|...++... .+.+..++..+++....+. ......++.++|+||++.|.++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~--~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV--GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE--CCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe--CCCCccccCCEECCCCCEEEEE
Confidence 3467899999987763321 1256667777776544332 1123578999999999887665
No 350
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=39.99 E-value=1.3e+02 Score=23.23 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=34.2
Q ss_pred CCCCEEEEEeC----C-------CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC--------CcEE
Q 024407 98 PLNRTIISAGE----D-------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD--------KSAK 158 (268)
Q Consensus 98 ~~~~~l~s~~~----d-------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d--------~~i~ 158 (268)
.+++.++.||. + ..+..||..+++-. .+.........-..+. -++..++.++.+ ..+.
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEE
Confidence 45666677763 1 12778898876532 2221111111111122 255666666632 4588
Q ss_pred EEECCCcc
Q 024407 159 LWDARTLE 166 (268)
Q Consensus 159 iwd~~~~~ 166 (268)
.||+.+.+
T Consensus 121 ~~d~~~~~ 128 (315)
T 4asc_A 121 CYDRLSFK 128 (315)
T ss_dssp EEETTTTE
T ss_pred EECCCCCc
Confidence 89998764
No 351
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=38.62 E-value=1.4e+02 Score=23.38 Aligned_cols=154 Identities=8% Similarity=-0.015 Sum_probs=75.3
Q ss_pred CCCCEEEEeecCCcEEEeecCCCcEEEE---------EecCCCc-eeeeeecCCeEEEEEcCCCcccccceEeeeeeeCC
Q 024407 4 ANSMTLITGSADQTAKLWNVETGAQLFT---------FNFDSPA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 73 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (268)
|+...+++.+.+|.||.=.+...+.... ++.+..+ ........+.++++.+.+......... ++...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~e---lp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ---LPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGG---SCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhH---CcCCC
Confidence 5678899999999999988866543221 1122222 222233345555555544322211111 11110
Q ss_pred CCCCCceEE---EEecCCCCeEEEEE-c--CCCCEEEEEeCCCcEEEEECCCCc-----eeeecccccCcccceEEEEEc
Q 024407 74 ADQGGESVL---ILKGPQGRINRAVW-G--PLNRTIISAGEDAIVRIWDTETGK-----LLKESDKETGHKKTITSLAKA 142 (268)
Q Consensus 74 ~~~~~~~~~---~~~~~~~~v~~~~~-~--~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~v~~s 142 (268)
....|.++. .+. ....|..+.. . +++.+++.++..|.++--.+..-. -+..+.. ... ..+..+...
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l-~~~-d~lv~~~~~ 154 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL-VDG-DELIGVDLT 154 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCC-CTT-CCEEEEEEE
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEE-CCC-CEEEEEEEe
Confidence 011222211 121 2234554432 2 345678889999999998764211 1111111 123 445555444
Q ss_pred CCCCEEEEeeCCCcEEEEECC
Q 024407 143 ADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 143 ~~~~~l~s~~~d~~i~iwd~~ 163 (268)
.+...++..+.+|.+..+...
T Consensus 155 ~~~~~i~l~T~~G~~irf~~~ 175 (307)
T 1zi0_A 155 SGEDEVMLFSAEGKVVRFKES 175 (307)
T ss_dssp CTTCEEEEEETTSEEEEEEGG
T ss_pred CCCCEEEEECCCCcEEEEEHH
Confidence 455578888888988777754
No 352
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=37.25 E-value=2.6e+02 Score=27.84 Aligned_cols=137 Identities=18% Similarity=0.115 Sum_probs=74.7
Q ss_pred CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCC
Q 024407 108 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 187 (268)
Q Consensus 108 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (268)
....|.|.|+.++..+.... . .-.+.| -+|..+.++--+ ..++.+||+.+.+.++.+..+.++.-..|-...
T Consensus 46 ~~~~vvIidl~~~~~~~rrp-i-~AdsAI----MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~- 117 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRP-I-SADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN- 117 (1630)
T ss_pred CCceEEEEECCCCCCccccc-c-cchhhc----cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCC-
Confidence 44468888988765432111 0 111222 245555554443 578999999988777777666667666775543
Q ss_pred eEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeee-------CCCeEEEEeeC
Q 024407 188 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG-------EDGYVRLHHFD 260 (268)
Q Consensus 188 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs-------~Dg~i~i~~~~ 260 (268)
.+.+.+. ..+.-|+.....-..+.|++ ...+.+ ..|..-..+++.++++-.| -.|.+.+|..+
T Consensus 118 ~l~lVT~---~aVyHW~~~~~s~P~k~fdR-----~~~L~~--~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 118 TVALVTD---NAVYHWSMEGESQPVKMFDR-----HSSLAG--CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred eeEEEcC---CeEEEeccCCCCccHHHHhc-----chhccc--CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 3333322 24556655321111222222 112222 3466677788999976433 24677887766
Q ss_pred CC
Q 024407 261 PD 262 (268)
Q Consensus 261 ~~ 262 (268)
..
T Consensus 188 r~ 189 (1630)
T 1xi4_A 188 RK 189 (1630)
T ss_pred cc
Confidence 44
No 353
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=36.35 E-value=1.4e+02 Score=22.75 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=35.2
Q ss_pred CCCEEEEEeC---------CCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC-----CcEEEEECCC
Q 024407 99 LNRTIISAGE---------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDART 164 (268)
Q Consensus 99 ~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~i~iwd~~~ 164 (268)
+++.++.||. -..+.+||+.+.+-.. +.........-..+. .++..++.++.+ ..+.+||+.+
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTT
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 4555566653 3558899998864322 211111111111222 256666676643 3588999987
Q ss_pred cce
Q 024407 165 LEL 167 (268)
Q Consensus 165 ~~~ 167 (268)
.+-
T Consensus 226 ~~W 228 (306)
T 3ii7_A 226 NEW 228 (306)
T ss_dssp TEE
T ss_pred CcE
Confidence 643
No 354
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=35.56 E-value=2e+02 Score=24.35 Aligned_cols=137 Identities=17% Similarity=0.103 Sum_probs=80.0
Q ss_pred CCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcceeeeeecCCceeEEEEccCCC
Q 024407 108 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 187 (268)
Q Consensus 108 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (268)
....|.|.|+.++..+.... . .-.+ ..-+|..+.++--+ ..++.+||+.+.+.++.+....++.-..|-.. .
T Consensus 46 ~~~~vvIiDl~~~~~~~rrp-i-~Ads----AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~ 117 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRP-I-SADS----AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-N 117 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEE-C-CCSE----EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-T
T ss_pred CCCeEEEEECCCCCcceecc-c-ccce----eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-C
Confidence 44478888998865432111 0 1122 22356666665544 58899999999888888776666666666543 2
Q ss_pred eEEEeecCCCceEEEeccCCCeeeeEeeehhhhhhhccccccccceEEEEECCCCCeEEeeeC-------CCeEEEEeeC
Q 024407 188 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-------DGYVRLHHFD 260 (268)
Q Consensus 188 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~lasgs~-------Dg~i~i~~~~ 260 (268)
.+.+.+. ..+.-|+........+.|++.. .+.+ ..|..-..+++.++++-.|- .|.+.+|..+
T Consensus 118 ~l~lVT~---taVyHWsi~~~s~P~kvFdR~~-----~L~~--~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 118 TVALVTD---NAVYHWSMEGESQPVKMFDRHS-----SLAG--CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp EEEEECS---SEEEEEESSSSCCCEEEEECCG-----GGTT--CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred eEEEEcC---CeeEEecccCCCCchhheecch-----hccc--ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 3433332 2466676644333445555422 1221 35777777899999764332 3556777766
Q ss_pred CC
Q 024407 261 PD 262 (268)
Q Consensus 261 ~~ 262 (268)
..
T Consensus 188 r~ 189 (494)
T 1bpo_A 188 RK 189 (494)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=35.42 E-value=2e+02 Score=24.16 Aligned_cols=106 Identities=11% Similarity=0.099 Sum_probs=57.6
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc---eeeecccc--c----CcccceEEEEEcCC----CCEEEEeeC--
Q 024407 90 RINRAVWGPLNR-TIISAGEDAIVRIWDTETGK---LLKESDKE--T----GHKKTITSLAKAAD----GSHFLTGSL-- 153 (268)
Q Consensus 90 ~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~---~~~~~~~~--~----~h~~~v~~v~~s~~----~~~l~s~~~-- 153 (268)
.-..++|.|+|. +|+.+-..|.|++++..... .+..+... . .-+.....|+++|+ +...++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 346789999995 56666789999999754221 12222111 1 11356788999986 444444332
Q ss_pred C----------CcEEEEECCCc----------ceeeeee---cCCceeEEEEccCCCeEEEeecCC
Q 024407 154 D----------KSAKLWDARTL----------ELIKTYV---TERPVNAVTMSPLLDHVVLGGGQD 196 (268)
Q Consensus 154 d----------~~i~iwd~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 196 (268)
+ ..|.-|.+... +.+..+. ..+....+.|.|++ .+.++.|+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCCC
Confidence 1 13444554321 1222221 12446788999976 455554443
No 356
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=30.41 E-value=1.9e+02 Score=22.28 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=34.8
Q ss_pred cCCCCEEEEEeC----CC-------cEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCC-------CcEE
Q 024407 97 GPLNRTIISAGE----DA-------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-------KSAK 158 (268)
Q Consensus 97 ~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-------~~i~ 158 (268)
..+++.++.||. ++ .+..||..+.+-.. +.........-..+. .++..++.++.+ ..+.
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCLFGLGE--VDDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCSCEEEE--ETTEEEEEEEEBTTTCCEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCccccccceEE--ECCEEEEEcCccCCCCcccceEE
Confidence 345666777773 12 27788988764322 211111111111122 256666777654 2477
Q ss_pred EEECCCcce
Q 024407 159 LWDARTLEL 167 (268)
Q Consensus 159 iwd~~~~~~ 167 (268)
+||+.+.+-
T Consensus 131 ~yd~~~~~W 139 (318)
T 2woz_A 131 CYDPVAAKW 139 (318)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCCE
Confidence 889887653
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=29.08 E-value=3.1e+02 Score=24.37 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=39.0
Q ss_pred CCCCEEEEEeCCC--cEEEEECCCCceeeeccc---ccCcccceEEEEEcCC-CCEEEEeeC--C-----CcEEEEECCC
Q 024407 98 PLNRTIISAGEDA--IVRIWDTETGKLLKESDK---ETGHKKTITSLAKAAD-GSHFLTGSL--D-----KSAKLWDART 164 (268)
Q Consensus 98 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~---~~~h~~~v~~v~~s~~-~~~l~s~~~--d-----~~i~iwd~~~ 164 (268)
.+++.++.||.++ .+.+||..+.+-.. +.. .......-.++.+..+ +..++.++. + +.+..||+.+
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~-~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKD-VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEE-CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEE-ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 3677778887655 79999998865322 211 0001111122344444 566677765 2 3588899987
Q ss_pred cc
Q 024407 165 LE 166 (268)
Q Consensus 165 ~~ 166 (268)
.+
T Consensus 578 ~~ 579 (695)
T 2zwa_A 578 EN 579 (695)
T ss_dssp TC
T ss_pred Cc
Confidence 66
No 358
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=25.67 E-value=3.5e+02 Score=23.99 Aligned_cols=75 Identities=13% Similarity=0.036 Sum_probs=44.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEeeCCCcEEEEECCCcc
Q 024407 90 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 166 (268)
Q Consensus 90 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~iwd~~~~~ 166 (268)
.|.++...++|+.-+.++..+-+..+|..+++...-..........+.++....+|.+-+ ++..| |..+|+++.+
T Consensus 473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~ 547 (758)
T 3ott_A 473 FINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHGG-VMRINPKDES 547 (758)
T ss_dssp CEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETTE-EEEECC--CC
T ss_pred eeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecCc-eEEEecCCCc
Confidence 478888888888665444445578889887654322111011134577777777776554 44444 8889887654
No 359
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=25.62 E-value=2.7e+02 Score=22.58 Aligned_cols=155 Identities=12% Similarity=0.055 Sum_probs=78.7
Q ss_pred CCCCCEEEEeecCCcEEEeecCC---------CcEEEEEecCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeC
Q 024407 3 QANSMTLITGSADQTAKLWNVET---------GAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARD 72 (268)
Q Consensus 3 s~d~~~l~s~s~D~tv~~wd~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (268)
-|+...+++.+.+|.||.=.+.. +.....++.+..+..+.... .+.++++.+.+....... +.++..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~---~eip~~ 80 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPV---HQLPEA 80 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEG---GGSCBC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEH---HHCcCC
Confidence 47788999999999999876532 22222233333333333333 344555554443222111 111111
Q ss_pred CCCCCCceEE---EEecCCCCeEEEE-EcC--CCCEEEEEeCCCcEEEEECCCCce-----eeecccccCcccceEEEEE
Q 024407 73 PADQGGESVL---ILKGPQGRINRAV-WGP--LNRTIISAGEDAIVRIWDTETGKL-----LKESDKETGHKKTITSLAK 141 (268)
Q Consensus 73 ~~~~~~~~~~---~~~~~~~~v~~~~-~~~--~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~v~~ 141 (268)
.....|.++. .+. ....|..+. ... +..+|+.++..|.++-..+..-.. +..+.. .. ...+..+..
T Consensus 81 ~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L-~~-~d~lv~v~~ 157 (370)
T 3l6v_A 81 GSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINL-DE-GDALVGVAL 157 (370)
T ss_dssp CTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCC-CT-TCCEEEEEE
T ss_pred CcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEe-CC-CCEEEEEEE
Confidence 1111222221 122 233455443 322 356899999999999887643111 111111 11 234555544
Q ss_pred cCCCCEEEEeeCCCcEEEEECC
Q 024407 142 AADGSHFLTGSLDKSAKLWDAR 163 (268)
Q Consensus 142 s~~~~~l~s~~~d~~i~iwd~~ 163 (268)
..+...++..+..|.+.-+...
T Consensus 158 ~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 158 TDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp ECSCCEEEEEETTSEEEEEEGG
T ss_pred eCCCceEEEEeCCCeEEEEEcc
Confidence 4455678888888888777754
No 360
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=23.14 E-value=89 Score=22.62 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=22.2
Q ss_pred ccceEEEEEcCCCCE-EEEeeCCCcEEEEECCCcce
Q 024407 133 KKTITSLAKAADGSH-FLTGSLDKSAKLWDARTLEL 167 (268)
Q Consensus 133 ~~~v~~v~~s~~~~~-l~s~~~d~~i~iwd~~~~~~ 167 (268)
...+.++.|...+.+ +++.+.++++.+||++-|+-
T Consensus 118 ~~hllsl~f~~g~aHaia~S~~g~~~tlFDPN~GEF 153 (188)
T 1ukf_A 118 RKHLLSLRFANVQGHAIACSCEGSQFKLFDPNLGEF 153 (188)
T ss_dssp CEEEEEEEETTTEEEEEEEEEETTEEEEEETTTEEE
T ss_pred CceEEEEEecCCCceeEEeccCCCeEEEeCCCCcee
Confidence 344555556554433 44455678999999987753
No 361
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=21.91 E-value=2.8e+02 Score=21.51 Aligned_cols=88 Identities=7% Similarity=-0.045 Sum_probs=45.8
Q ss_pred EEcCCCCEEEEEe--CC--CcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee-CCCcEEEEECCCcceee
Q 024407 95 VWGPLNRTIISAG--ED--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIK 169 (268)
Q Consensus 95 ~~~~~~~~l~s~~--~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~ 169 (268)
.|+|++++|+-.. .+ ..|...++.... ...+.. +.. .++++++..|.-.+ ...+|..-++..+...
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~---~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~- 180 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKN---HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA- 180 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEES---SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE-
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeC---CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE-
Confidence 6788888887554 33 445555554322 222211 111 34567777776444 4677888887665432
Q ss_pred eeecCCceeEEEEccCCCeEEEee
Q 024407 170 TYVTERPVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~ 193 (268)
.+. +.... ..+.|.++.++.+.
T Consensus 181 ~l~-~~~~~-~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 181 LFY-DCNCY-KPVVLDDTNVYYMD 202 (302)
T ss_dssp EEE-CSCEE-EEEEEETTEEEEEE
T ss_pred EEe-CCCcc-ceeeecCCEEEEEE
Confidence 222 22222 23457777766553
No 362
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=20.39 E-value=3.2e+02 Score=21.55 Aligned_cols=156 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCCCEEEEeecCCcEEEeec--------CCCcEEEEEecCCCceeeeeec-CCeEEEEEcCCCcccccceEeeeeeeCCC
Q 024407 4 ANSMTLITGSADQTAKLWNV--------ETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPA 74 (268)
Q Consensus 4 ~d~~~l~s~s~D~tv~~wd~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
.++..|+.++..|.+|.-.+ ..+.....+...+.+..+.... .+.++++...+.........+..+.+.
T Consensus 104 ~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~-- 181 (323)
T 1wp5_A 104 ELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVR-- 181 (323)
T ss_dssp TSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSS--
T ss_pred CCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCC--
Q ss_pred CCCCceEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceeeecccccCcccceEEEEEcCCCCE
Q 024407 75 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET-------GKLLKESDKETGHKKTITSLAKAADGSH 147 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 147 (268)
..|.....++....-+....+.++...++..+..|..+..++.. ++-+..+.........+..+....+...
T Consensus 182 -a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~ 260 (323)
T 1wp5_A 182 -AAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDT 260 (323)
T ss_dssp -CCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCE
T ss_pred -CcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCe
Q ss_pred EEEeeCCCcEEEEEC
Q 024407 148 FLTGSLDKSAKLWDA 162 (268)
Q Consensus 148 l~s~~~d~~i~iwd~ 162 (268)
++..+..|.+.-..+
T Consensus 261 i~~it~~g~~ir~~~ 275 (323)
T 1wp5_A 261 IYLQTEKSFIETIKV 275 (323)
T ss_dssp EEEEETTSCEEEEEG
T ss_pred EEEEeCCCeEEEEEh
No 363
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=20.02 E-value=4.4e+02 Score=23.03 Aligned_cols=167 Identities=10% Similarity=-0.020 Sum_probs=88.3
Q ss_pred cCCcEEEeecCCCcEEEEEecC--CCceeeeeecCCeEEEEEcCCCcccccceEeeeeeeCCCCCCCceEEEEecCCCCe
Q 024407 14 ADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 91 (268)
Q Consensus 14 ~D~tv~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 91 (268)
.-..|+.-|++.......+... ..+..+++.+....+.++... .. .+.++.. .++.....+.......
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~----~~--~I~r~~~----~g~~~~~v~~~g~~~P 82 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS----LK--TISRAFM----NGSALEHVVEFGLDYP 82 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT----TT--EEEEEET----TSCSCEEEECSSCSCC
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC----CC--eEEEEEC----CCCCcEEEEeCCCCCc
Confidence 5568999999876543333222 245677777754443333211 11 1111111 1111222233223456
Q ss_pred EEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeecccccCcccceEEEEEcCCCCEEEEee--CCCcEEEEECCCccee
Q 024407 92 NRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELI 168 (268)
Q Consensus 92 ~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~ 168 (268)
..+++.+.++.| ++-...+.|.+.++..... ..+.. ..-.....+++.|....|..+. ..+.|...++......
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~--~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVW--KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEEC--SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEe--CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 678888776655 5556678899999865432 22211 1123457899998544444433 2567888887654332
Q ss_pred eeeecCCceeEEEEccCCCeEEEee
Q 024407 169 KTYVTERPVNAVTMSPLLDHVVLGG 193 (268)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (268)
.....-...+.+++++....+..+-
T Consensus 160 ~l~~~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 160 TLVPNVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEE
T ss_pred EEECCCCCcceEEEccccCEEEEEE
Confidence 2222223577888888766665553
Done!