Query 024410
Match_columns 268
No_of_seqs 132 out of 1378
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 07:46:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 4.5E-45 1.5E-49 311.5 15.9 229 4-242 52-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.2E-43 4.1E-48 301.9 17.6 226 4-240 55-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 4.5E-40 1.5E-44 279.9 20.6 218 45-267 4-226 (297)
4 2lck_A Mitochondrial uncouplin 100.0 4.4E-40 1.5E-44 280.6 18.0 210 50-267 3-219 (303)
5 3f2e_A SIRV coat protein; four 22.0 68 0.0023 20.3 2.6 32 88-119 6-41 (100)
6 2acm_A Mucin-1; auto-catalytic 19.8 19 0.00064 21.7 -0.3 20 91-110 40-59 (66)
7 1y9i_A Low temperature require 18.7 1.1E+02 0.0037 23.0 3.5 41 224-264 111-156 (178)
8 3fbl_A Putative uncharacterize 17.0 84 0.0029 19.0 2.1 29 194-222 3-35 (82)
9 2lor_A Transmembrane protein 1 20.3 32 0.0011 23.2 0.0 28 16-43 29-56 (108)
10 3tgu_G UQCRQ, mitochondrial ub 13.6 2.1E+02 0.0073 18.3 3.5 33 212-244 38-70 (81)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.5e-45 Score=311.54 Aligned_cols=229 Identities=26% Similarity=0.364 Sum_probs=197.8
Q ss_pred chhhhhheecchhhhcccCCccceeeech--------HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhccchHHHHHH
Q 024410 4 EARVGVVVEGGQRGLSSGNGSVSVDKITL--------QQQQKQMLQNQSQIGTISQLLAGGVAGALSKTCTAPLARLTIL 75 (268)
Q Consensus 4 ~~~~~i~~~~G~~gly~G~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~e~ik~~ 75 (268)
++.+.++++||++|||||+.+++++.+++ +..++.+.+.....+....+++|++||+++.++++|+|+||+|
T Consensus 52 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktr 131 (303)
T 2lck_A 52 GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVR 131 (303)
T ss_dssp HHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 46788999999999999999999887643 3444444333224677889999999999999999999999999
Q ss_pred HHhcCCcCCccccccchHHHHHHHHHHhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhcCccccccCCCCchhH
Q 024410 76 FQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDL 155 (268)
Q Consensus 76 ~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (268)
+|++... ....+|++.++++++|+++||++|||||+.+++++.++..+++|.+||.+|+.+.+.. ....+.
T Consensus 132 lq~~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-------~~~~~~ 202 (303)
T 2lck_A 132 FQAQARA--GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-------LMTDDL 202 (303)
T ss_dssp HHHSCSC--CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-------SCCSCH
T ss_pred Hhccccc--CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCCch
Confidence 9998653 1234688999999999999999999999999999999999999999999999875421 112345
Q ss_pred HHHHHhhhHHHHHHHHhhccHHHHHHHHhhccCccccccHHHHHHHHHHhhcccccccchhhhhhhhhhhHHHHHHHHHH
Q 024410 156 FVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYET 235 (268)
Q Consensus 156 ~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~~~~~~~ye~ 235 (268)
...+++|++|+++++++++|+|+||+|+|.+.. ..|.++++++++++++||+++||||+.|+++|.+|.++++|.+||.
T Consensus 203 ~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~ 281 (303)
T 2lck_A 203 PCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQ 281 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHH
Confidence 677999999999999999999999999999864 3689999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 024410 236 LRSFWQS 242 (268)
Q Consensus 236 ~~~~~~~ 242 (268)
+++++.+
T Consensus 282 ~k~~l~~ 288 (303)
T 2lck_A 282 LKRALMA 288 (303)
T ss_dssp HHSCCCC
T ss_pred HHHHHHH
Confidence 9987754
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.2e-43 Score=301.91 Aligned_cols=226 Identities=22% Similarity=0.313 Sum_probs=186.5
Q ss_pred chhhhhheecchhhhcccCCccceeeechH--------HHHHHHhhc-CCC----chhHHHHHHHHHHHHHHHhhccchH
Q 024410 4 EARVGVVVEGGQRGLSSGNGSVSVDKITLQ--------QQQKQMLQN-QSQ----IGTISQLLAGGVAGALSKTCTAPLA 70 (268)
Q Consensus 4 ~~~~~i~~~~G~~gly~G~~~~~~~~~~~~--------~~~~~~~~~-~~~----~~~~~~~~~g~~a~~~~~~i~~P~e 70 (268)
++.+.++++||++|||||+.+++++.+++. ..++..... +.. .+....+++|++||+++.++++|+|
T Consensus 55 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld 134 (297)
T 1okc_A 55 DCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLD 134 (297)
T ss_dssp HHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 567889999999999999999999877543 333322221 111 2346788999999999999999999
Q ss_pred HHHHHHHhcCCcCCccccccchHHHHHHHHHHhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhcCccccccCCC
Q 024410 71 RLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGEN 150 (268)
Q Consensus 71 ~ik~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (268)
+||+|+|++.... ....+|++.++++++++++||++|||||+.+++++.++..+++|.+||.+|+.+.+.
T Consensus 135 ~vktrlq~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--------- 204 (297)
T 1okc_A 135 FARTRLAADVGKG-AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--------- 204 (297)
T ss_dssp HHHHHHHHCCCSS-TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---------
T ss_pred HHHHHHhccccCC-CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---------
Confidence 9999999986432 123468999999999999999999999999999999999999999999999865321
Q ss_pred CchhHHHHHHhhhHHHHHHHHhhccHHHHHHHHhhccC----ccccccHHHHHHHHHHhhcccccccchhhhhhhhhhhH
Q 024410 151 MSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN----VIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSI 226 (268)
Q Consensus 151 ~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~ 226 (268)
...+....+++|++++++++++++|+|+||+|+|.+.. ...|.++++++++++++||+++||||+.|+++|. +.+
T Consensus 205 ~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~ 283 (297)
T 1okc_A 205 KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGG 283 (297)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHH
T ss_pred CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccc
Confidence 11345677899999999999999999999999998743 2468999999999999999999999999999996 578
Q ss_pred HHHHHHHHHHHHHH
Q 024410 227 AISFSVYETLRSFW 240 (268)
Q Consensus 227 ~~~~~~ye~~~~~~ 240 (268)
++.|.+||.+++++
T Consensus 284 ~~~f~~ye~~k~~l 297 (297)
T 1okc_A 284 AFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHTC----
T ss_pred eeeehHHHHHHhhC
Confidence 89999999988753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.5e-40 Score=279.90 Aligned_cols=218 Identities=30% Similarity=0.501 Sum_probs=184.8
Q ss_pred CchhHHHHHHHHHHHHHHHhhccchHHHHHHHHhcCCcCC-ccccccchHHHHHHHHHHhhhhhhhhcchhhhhhhhhhh
Q 024410 45 QIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD-TATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPY 123 (268)
Q Consensus 45 ~~~~~~~~~~g~~a~~~~~~i~~P~e~ik~~~q~~~~~~~-~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~ 123 (268)
..+....+++|++||+++.++++|+|+||+|+|++..... ....+|++.++++++++++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 3567789999999999999999999999999999864321 223478999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCccccccCCCCchhHHHHHHhhhHHHHHHHHhhccHHHHHHHHhhccC----ccccccHHHHH
Q 024410 124 SSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN----VIYYRGICHAL 199 (268)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~----~~~~~~~~~~~ 199 (268)
.+++|.+||.+++.+..... .++.........+++|++++++++++++|+|+||+|+|++.. ...|.++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999996533211 011111345678999999999999999999999999999843 34689999999
Q ss_pred HHHHHhhcccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhhccC
Q 024410 200 QTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTG 267 (268)
Q Consensus 200 ~~i~~~~G~~~lyrG~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~ 267 (268)
++++++||+++||||+.+++++.+|.++++|.+||.+++.+.+.. +.+....+++|.+||++++++
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--~~~~~~~~~~g~~ag~~a~~~ 226 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLV 226 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--CSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999875532 345677888999998887753
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.4e-40 Score=280.64 Aligned_cols=210 Identities=20% Similarity=0.345 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHhcCCcCC----ccccccchHHHHHHHHHHhhhhhhhhcchhhhhhhhhhhhH
Q 024410 50 SQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD----TATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSS 125 (268)
Q Consensus 50 ~~~~~g~~a~~~~~~i~~P~e~ik~~~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 125 (268)
..+++|++||+++.++++|+|+||+|+|++..... ....+|++.++++++++++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999865321 11346899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccccCCCCchhHHHHHHhhhHHHHHHHHhhccHHHHHHHHhhccC---ccccccHHHHHHHH
Q 024410 126 VNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN---VIYYRGICHALQTI 202 (268)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~---~~~~~~~~~~~~~i 202 (268)
++|.+||.+|+.+.+.. + ..+....+++|++++++++++++|+|+||+|+|.+.. ...|.+++++++++
T Consensus 83 i~f~~ye~~k~~~~~~~------~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i 154 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS------E--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTI 154 (303)
T ss_dssp HTTTHHHHHHHHHSCCC------S--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC------c--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHH
Confidence 99999999999885421 1 2456778999999999999999999999999999863 34789999999999
Q ss_pred HHhhcccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhhccC
Q 024410 203 CRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTG 267 (268)
Q Consensus 203 ~~~~G~~~lyrG~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~ 267 (268)
+++||+++||||+.+++++.+|.++++|.+||.+++.+.+....+.+....+++|++||++++++
T Consensus 155 ~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~ 219 (303)
T 2lck_A 155 AREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVI 219 (303)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876555667788899999999988763
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=22.03 E-value=68 Score=20.34 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=22.4
Q ss_pred cccchHHHHHHHHHHhhhh----hhhhcchhhhhhh
Q 024410 88 LRKASIWREASRIISEEGF----RAFWKGNLVTIAH 119 (268)
Q Consensus 88 ~~~~~~~~~~~~i~~~~G~----~glyrG~~~~~~~ 119 (268)
+|+.+.-+-+..++.+-|+ |.+|+|+.....|
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvar 41 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVAR 41 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHH
Confidence 4788888888888888886 4577777665543
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=19.80 E-value=19 Score=21.66 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHhhhhhhhh
Q 024410 91 ASIWREASRIISEEGFRAFW 110 (268)
Q Consensus 91 ~~~~~~~~~i~~~~G~~gly 110 (268)
+++.+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 57888888999999988875
No 7
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=18.69 E-value=1.1e+02 Score=23.01 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCC-----CChHHHHHHHHHHHHhhh
Q 024410 224 PSIAISFSVYETLRSFWQSRRQN-----DSPVLVSLACGSLSGIAS 264 (268)
Q Consensus 224 ~~~~~~~~~ye~~~~~~~~~~~~-----~~~~~~~~~~g~~ag~~a 264 (268)
....+.|-.||..|...-+..+. --....++++|..|+++.
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~ 156 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAAS 156 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHH
Confidence 45567888888888654433222 235788999999998865
No 8
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=16.96 E-value=84 Score=18.95 Aligned_cols=29 Identities=34% Similarity=0.700 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHhhccc----ccccchhhhhhhh
Q 024410 194 GICHALQTICRDEGIW----GLYKGLGATLLGV 222 (268)
Q Consensus 194 ~~~~~~~~i~~~~G~~----~lyrG~~~~l~~~ 222 (268)
.++-.++++.+.+|+- |.|-.+.-.++++
T Consensus 3 klrlaikeicktdgipnikwgmyiafgekllks 35 (82)
T 3fbl_A 3 KLRLAIKEICKTDGIPNIKWGMYIAFGEKLLKS 35 (82)
T ss_dssp HHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCCCCcchhHHHHHHHHHHHHH
Confidence 3456788999999974 3444444444443
No 9
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=20.27 E-value=32 Score=23.20 Aligned_cols=28 Identities=7% Similarity=-0.121 Sum_probs=17.5
Q ss_pred hhhcccCCccceeeechHHHHHHHhhcC
Q 024410 16 RGLSSGNGSVSVDKITLQQQQKQMLQNQ 43 (268)
Q Consensus 16 ~gly~G~~~~~~~~~~~~~~~~~~~~~~ 43 (268)
++|++|+.+-+++........+....+-
T Consensus 29 ~Af~~Gl~tF~lG~~~~f~~Q~~vqrkl 56 (108)
T 2lor_A 29 HAFMKGVFTFVTGTGMAFGLQMFIQRKF 56 (108)
Confidence 6788899887777665444444444333
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=13.57 E-value=2.1e+02 Score=18.28 Aligned_cols=33 Identities=9% Similarity=0.273 Sum_probs=24.4
Q ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHhhcC
Q 024410 212 YKGLGATLLGVGPSIAISFSVYETLRSFWQSRR 244 (268)
Q Consensus 212 yrG~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~ 244 (268)
+|-+..+++..+|..++.+.+|+-.++..+...
T Consensus 38 ~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 38 WRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 333556778888888999999998888766543
Done!