BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024411
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 446 bits (1147), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/267 (79%), Positives = 241/267 (90%), Gaps = 1/267 (0%)
Query: 2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPH-LFKIQHTDVPLSYYTGIL 60
PI+GYGVAKVL+S +P+F KGDLVWGMTGWEEYS+IT LFKI DVPLSYYTGIL
Sbjct: 75 SPITGYGVAKVLESGDPKFQKGDLVWGMTGWEEYSIITPTQTLFKIHDKDVPLSYYTGIL 134
Query: 61 GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
GMPGMTAY GF+EVCSPK GE VF+SAASGAVGQLVGQFAK+LGCYVVGSAGSK+KVDLL
Sbjct: 135 GMPGMTAYAGFHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLL 194
Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
K+KFGFDEAFNYKEE DL+AALKRYFP+GIDIYFENVGGK+LDAVL NMK+ GRIA CGM
Sbjct: 195 KSKFGFDEAFNYKEEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGM 254
Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
ISQYNL++ EGVHNL L++KR+RMEGF+V D+YHLYPK+LEM+IP IK GK+VYVED+A
Sbjct: 255 ISQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVA 314
Query: 241 EGLESAPAALIGLFSGQNVGKQVVAVA 267
GLESAP AL+GLFSG+N+GKQVV V+
Sbjct: 315 HGLESAPTALVGLFSGRNIGKQVVMVS 341
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/268 (72%), Positives = 229/268 (85%), Gaps = 2/268 (0%)
Query: 2 QPISGYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITA-PHL-FKIQHTDVPLSYYTGI 59
QPI GYGV+++++S +P++ KGDL+WG+ WEEYS+IT H FKIQHTDVPLSYYTG+
Sbjct: 76 QPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGL 135
Query: 60 LGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
LGMPGMTAY GFYEVCSPK GE V++SAASGAVGQLVGQ AK++GCYVVGSAGSK+KVDL
Sbjct: 136 LGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDL 195
Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
LK KFGFD+AFNYKEE+DL AALKR FP GIDIYFENVGGK+LDAVL NM + GRIA CG
Sbjct: 196 LKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCG 255
Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDM 239
MISQYNL+ EGVHNL ++ KR R++GF+V D Y Y KFLE ++PHI+EGK+ YVED+
Sbjct: 256 MISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDV 315
Query: 240 AEGLESAPAALIGLFSGQNVGKQVVAVA 267
A+GLE AP AL+GLF G+NVGKQVV VA
Sbjct: 316 ADGLEKAPEALVGLFHGKNVGKQVVVVA 343
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/260 (46%), Positives = 160/260 (61%), Gaps = 2/260 (0%)
Query: 8 GVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTA 67
GV KVL S++P F GD V G G ++Y + +K+ + PL Y LGM GMTA
Sbjct: 78 GVGKVLVSKHPGFQAGDYVNGALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTA 137
Query: 68 YVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFD 127
Y +V PK+GE V IS A+GAVG + GQ A+L GC VVG AG +K L + GFD
Sbjct: 138 YFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFD 197
Query: 128 EAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLD 187
A +YK E DL A LKR P+GID++F+NVGG++LD VL + + RI CG ISQYN
Sbjct: 198 GAIDYKNE-DLAAGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNK 256
Query: 188 KP-EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESA 246
+ G N + L+ R RMEG +V+D+ +P+ L+ + + EGKL ED+ EGLE+
Sbjct: 257 EAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIVEGLETF 316
Query: 247 PAALIGLFSGQNVGKQVVAV 266
P L+ LFSG+N GK V+ V
Sbjct: 317 PETLLKLFSGENFGKLVLKV 336
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 203 bits (516), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 162/265 (61%), Gaps = 6/265 (2%)
Query: 6 GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHT---DVPLSYYTGILGM 62
G VA+V++S+N F G +V +GW + + L K+ +PLS G +GM
Sbjct: 69 GQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGM 128
Query: 63 PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
PG+TAY G EVC K GE V +SAA+GAVG +VGQ AKL GC VVG+AGS +K+ LK
Sbjct: 129 PGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK- 187
Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
+ GFD AFNYK L ALK+ P+G D YF+NVGG+ L+ VL MK G+IA CG IS
Sbjct: 188 QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAIS 247
Query: 183 QYN-LDKPEGVHNLMYLVSKRLRMEGFIVLD-HYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
YN +D+ + ++ K+LR+EGFIV + K L ++ + EGK+ Y E +
Sbjct: 248 VYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVT 307
Query: 241 EGLESAPAALIGLFSGQNVGKQVVA 265
+G E+ PAA I + +G N+GK VV
Sbjct: 308 KGFENMPAAFIEMLNGANLGKAVVT 332
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/264 (43%), Positives = 153/264 (57%), Gaps = 6/264 (2%)
Query: 6 GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHT---DVPLSYYTGILGM 62
G VAKV++S+N KG +V GW +S+ L K+ +PLS G +GM
Sbjct: 64 GQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGM 123
Query: 63 PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
PG+TAY G E+C K GE V ++AA+GAVG +VGQ AKL GC VVG+ GS +KV L+
Sbjct: 124 PGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ- 182
Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
K GFD FNYK L LK+ P+G D YF+NVGG+ + V+ MK GRIA CG IS
Sbjct: 183 KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAIS 242
Query: 183 QYNLDKPEGVHNLMYLV-SKRLRMEGFIVLD-HYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
YN P +V + LRME F+V K L+ ++ + EGK+ Y E +
Sbjct: 243 TYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYII 302
Query: 241 EGLESAPAALIGLFSGQNVGKQVV 264
EG E+ PAA +G+ G N+GK +V
Sbjct: 303 EGFENMPAAFMGMLKGDNLGKTIV 326
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/264 (43%), Positives = 153/264 (57%), Gaps = 6/264 (2%)
Query: 6 GYGVAKVLDSENPEFNKGDLVWGMTGWEEYSLITAPHLFKIQHT---DVPLSYYTGILGM 62
G VAKV++S+N KG +V GW +S+ L K+ +PLS G +GM
Sbjct: 85 GQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGM 144
Query: 63 PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKN 122
PG+TAY G E+C K GE V ++AA+GAVG +VGQ AKL GC VVG+ GS +KV L+
Sbjct: 145 PGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ- 203
Query: 123 KFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
K GFD FNYK L LK+ P+G D YF+NVGG+ + V+ MK GRIA CG IS
Sbjct: 204 KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAIS 263
Query: 183 QYNLDKPEGVHNLMYLV-SKRLRMEGFIVLD-HYHLYPKFLEMIIPHIKEGKLVYVEDMA 240
YN P +V + LRME F+V K L+ ++ + EGK+ Y E +
Sbjct: 264 TYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYII 323
Query: 241 EGLESAPAALIGLFSGQNVGKQVV 264
EG E+ PAA +G+ G N+GK +V
Sbjct: 324 EGFENMPAAFMGMLKGDNLGKTIV 347
>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
18beta-Glycyrrhetinic Acid
pdb|2VNA|A Chain A, Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (
Zadh1)
pdb|2W98|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
pdb|2W98|B Chain B, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
Length = 357
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 21/281 (7%)
Query: 2 QPISGYGVAKVLDSENPEFNKGDLVWGMTG-WEEYSLITAPHLFKI--QHTDVPLSYYTG 58
Q + G G+ + +S++ KGD V W+ ++ L K+ Q D LSY+ G
Sbjct: 73 QVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLG 132
Query: 59 ILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKD 115
+GMPG+T+ +G E + + + +S A+GA G + GQ LGC VVG G+ +
Sbjct: 133 AIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE 192
Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
K LL ++ GFD A NYK++ ++ L+ P G+D+YF+NVGG + D V+ M I
Sbjct: 193 KCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHI 251
Query: 176 AACGMISQYNLDKP---------EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIP 226
CG ISQYN D P E + + + E F+VL++ + + +
Sbjct: 252 ILCGQISQYNKDVPYPPPLSPAIEAIQK-----ERNITRERFLVLNYKDKFEPGILQLSQ 306
Query: 227 HIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA 267
KEGKL E + GLE+ AA + +G N+GKQ+V ++
Sbjct: 307 WFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCIS 347
>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And 15-Keto-Pge2
pdb|2ZB7|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph And Nicotinamide
pdb|2ZB8|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And Indomethacin
Length = 357
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 21/281 (7%)
Query: 2 QPISGYGVAKVLDSENPEFNKGDLVWGM-TGWEEYSLITAPHLFKI--QHTDVPLSYYTG 58
Q + G G+ + +S++ KGD V W+ ++ L K+ Q D LSY+ G
Sbjct: 78 QVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLG 137
Query: 59 ILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKD 115
+GMPG+T+ +G E + + + +S A+GA G + GQ LGC VVG G+ +
Sbjct: 138 AIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE 197
Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
K LL ++ GFD A NYK++ ++ L+ P G+D+YF+NVGG + D V+ M I
Sbjct: 198 KCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHI 256
Query: 176 AACGMISQYNLDKP---------EGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIP 226
CG ISQYN D P E + + + E F+VL++ + + +
Sbjct: 257 ILCGQISQYNKDVPYPPPLSPAIEAIQK-----ERNITRERFLVLNYKDKFEPGILQLSQ 311
Query: 227 HIKEGKLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA 267
KEGKL E + GLE+ AA + +G N+GKQ+V ++
Sbjct: 312 WFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCIS 352
>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph
Length = 353
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 146/276 (52%), Gaps = 11/276 (3%)
Query: 2 QPISGYGVAKVLDSENPEFNKGDLVWGMTG-WEEYSLITAPHLFKI--QHTDVPLSYYTG 58
Q G G+ V +S++ + KGD V W+ +++ L K+ Q D LSY+ G
Sbjct: 74 QVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLG 133
Query: 59 ILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKD 115
+GMPG+T+ +G E S + + +S A+GA G L GQ LLGC VVG G+++
Sbjct: 134 AIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQE 193
Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
K L ++ GFD A NYK ++ L+ P G+D+YF+NVGG + +AV+ M I
Sbjct: 194 KCLFLTSELGFDAAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNAVISQMNENSHI 252
Query: 176 AACGMISQYNLDKPEGVHNLMYLVSKR----LRMEGFIVLDHYHLYPKFLEMIIPHIKEG 231
CG ISQY+ D P + + R + E F VL++ + + + KEG
Sbjct: 253 ILCGQISQYSNDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEG 312
Query: 232 KLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA 267
KL E MA+GLE+ A + +G NVGKQ+V ++
Sbjct: 313 KLKVKETMAKGLENMGVAFQSMMTGGNVGKQIVCIS 348
>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent
Oxidoreductase From Mus Musculus At 2.10 A Resolution
Length = 363
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 141/276 (51%), Gaps = 11/276 (3%)
Query: 2 QPISGYGVAKVLDSENPEFNKGDLVWGMTG-WEEYSLITAPHLFKI--QHTDVPLSYYTG 58
Q G G+ V +S++ + KGD V W+ +++ L K+ Q D LSY+ G
Sbjct: 84 QVADGGGIGIVEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLG 143
Query: 59 ILGMPGMTAYVGFYEV--CSPKHGECVFISAASGAVGQLVGQFAKLLGC-YVVGSAGSKD 115
+G PG+T+ +G E S + +S A+GA G L GQ LLGC VVG G+++
Sbjct: 144 AIGXPGLTSLIGVQEKGHISAGSNQTXVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQE 203
Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
K L ++ GFD A NYK ++ L+ P G+D+YF+NVGG + + V+ I
Sbjct: 204 KCLFLTSELGFDAAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNTVISQXNENSHI 262
Query: 176 AACGMISQYNLDKPEGVHNLMYLVSKR----LRMEGFIVLDHYHLYPKFLEMIIPHIKEG 231
CG ISQYN D P + + R + E F VL++ + + + KEG
Sbjct: 263 ILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEG 322
Query: 232 KLVYVEDMAEGLESAPAALIGLFSGQNVGKQVVAVA 267
KL E +A+GLE+ A +G NVGKQ+V ++
Sbjct: 323 KLKVKETVAKGLENXGVAFQSXXTGGNVGKQIVCIS 358
>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
pdb|2WEK|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
Length = 341
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 30/249 (12%)
Query: 40 APHLFKIQHTDVPLSYYTGI---------LGMPGMTAYVGFYEVCSPKHGECVFISAASG 90
AP F ++T VP S T + L + G TAY+ E+ G+ V ++AA+G
Sbjct: 95 APGSFA-EYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAG 153
Query: 91 AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGI 150
GQ Q +K C+V+G+ S +K LK+ G D NYK E + LK+ +PEG+
Sbjct: 154 GTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCDRPINYKTEP-VGTVLKQEYPEGV 211
Query: 151 DIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL------MYLVSKRLR 204
D+ +E+VGG + D + + +GR+ G IS Y P G+ + L+ K
Sbjct: 212 DVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ--TPTGLSPVKAGTLPAKLLKKSAS 269
Query: 205 MEGFIVLDHY-HLYPKFLEMIIPHIKEGKLVYVEDMAE--------GLESAPAALIGLFS 255
++GF L+HY Y + ++ G LV D+ + GLES A+ ++
Sbjct: 270 VQGFF-LNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYM 328
Query: 256 GQNVGKQVV 264
G+N GK VV
Sbjct: 329 GKNTGKIVV 337
>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
pdb|2X7H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
Length = 370
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 30/249 (12%)
Query: 40 APHLFKIQHTDVPLSYYTGI---------LGMPGMTAYVGFYEVCSPKHGECVFISAASG 90
AP F ++T VP S T + L + G TAY+ E+ G+ V ++AA+G
Sbjct: 124 APGSFA-EYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAG 182
Query: 91 AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGI 150
GQ Q +K C+V+G+ S +K LK+ G D NYK E + LK+ +PEG+
Sbjct: 183 GTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCDRPINYKTEP-VGTVLKQEYPEGV 240
Query: 151 DIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL------MYLVSKRLR 204
D+ +E+VGG + D + + +GR+ G IS Y P G+ + L+ K
Sbjct: 241 DVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ--TPTGLSPVKAGTLPAKLLKKSAS 298
Query: 205 MEGFIVLDHY-HLYPKFLEMIIPHIKEGKLVYVEDMAE--------GLESAPAALIGLFS 255
++GF L+HY Y + ++ G LV D+ + GLES A+ ++
Sbjct: 299 VQGFF-LNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYM 357
Query: 256 GQNVGKQVV 264
G+N GK VV
Sbjct: 358 GKNTGKIVV 366
>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product
pdb|2C0C|B Chain B, Structure Of The Mgc45594 Gene Product
pdb|2X1H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
pdb|2X1H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
Length = 362
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 30/249 (12%)
Query: 40 APHLFKIQHTDVPLSYYTGI---------LGMPGMTAYVGFYEVCSPKHGECVFISAASG 90
AP F ++T VP S T + L + G TAY+ E+ G+ V ++AA+G
Sbjct: 116 APGSFA-EYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAG 174
Query: 91 AVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGI 150
GQ Q +K C+V+G+ S +K LK+ G D NYK E + LK+ +PEG+
Sbjct: 175 GTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCDRPINYKTEP-VGTVLKQEYPEGV 232
Query: 151 DIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNL------MYLVSKRLR 204
D+ +E+VGG + D + + +GR+ G IS Y P G+ + L+ K
Sbjct: 233 DVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ--TPTGLSPVKAGTLPAKLLKKSAS 290
Query: 205 MEGFIVLDHY-HLYPKFLEMIIPHIKEGKLVYVEDMAE--------GLESAPAALIGLFS 255
++GF L+HY Y + ++ G LV D+ + GLES A+ ++
Sbjct: 291 VQGFF-LNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYM 349
Query: 256 GQNVGKQVV 264
G+N GK VV
Sbjct: 350 GKNTGKIVV 358
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 8 GVAKVLDSENPEFNKGDLVWGMT----GWEEYSLITAPHLFKIQHTDVPLSYYTGI-LGM 62
GV + + F KGD V+ + G+ EY+L ++K+ L + G +G+
Sbjct: 97 GVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEK---LDFKQGAAIGI 153
Query: 63 PGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL-LK 121
P TAY K GE V + ASG VG Q A+ G ++G+AG+++ + L+
Sbjct: 154 PYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ 213
Query: 122 NKFGFDEAFNYKEEADLNAALKRYFPE-GIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
N G E FN++E ++ +K+Y E GIDI E + L L + GR+ G
Sbjct: 214 N--GAHEVFNHREVNYID-KIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVG 269
>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase
Length = 333
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 10/187 (5%)
Query: 4 ISGYGVAKVLDSENP---EFNKGDLVWG----MTGWEEYSLITAPHLFKI-QHTDVPLSY 55
+ G+ A V++ P +F G+ V + + + L A L K+ + D+ +
Sbjct: 63 VVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVH 122
Query: 56 YTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKD 115
G++ + GMTA ++ K G+ V I AA+G +G ++ +A+ LG V+G+ +++
Sbjct: 123 LAGLM-LKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEE 181
Query: 116 KVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRI 175
K + + K G NY + + +G+D+ ++++G L L ++ RG
Sbjct: 182 KAETAR-KLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMC 240
Query: 176 AACGMIS 182
AA G S
Sbjct: 241 AAYGHAS 247
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 13/183 (7%)
Query: 65 MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
+TA+ + + G+ V + AA V Q AKL G V+ +AGS+DK+ K
Sbjct: 152 LTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL 210
Query: 125 GFDEAFNYKEEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQ 183
G DE NY D ++R +G D ++ G + V+ GRIA G S
Sbjct: 211 GADETVNYT-HPDWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSG 269
Query: 184 YNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGL 243
Y EG ++ ++L + G + L+P I+ ++EGKL V L
Sbjct: 270 Y-----EGTLPFAHVFYRQLSILGSTMASKSRLFP-----ILRFVEEGKLKPVVGQVLPL 319
Query: 244 ESA 246
E+A
Sbjct: 320 EAA 322
>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh
pdb|1O8C|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|B Chain B, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|C Chain C, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|D Chain D, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
Length = 345
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 24/208 (11%)
Query: 12 VLDSENPEFNKGDLVWGMTGW----------EEYSLITAPHLFKI-QHTDVPLSYYTGIL 60
V SE+P F+ G V +TGW E + + L + Q D + G
Sbjct: 90 VRTSEDPRFHAGQEVL-LTGWGVGENHWGGLAEQARVKGDWLVAMPQGLDARKAMIIGTA 148
Query: 61 GMPGMTAYVGFYEV-CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDL 119
G M + + P+ GE V ++ ASG VG LG VV +G + +
Sbjct: 149 GFTAMLCVMALEDAGVRPQDGEIV-VTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEY 207
Query: 120 LKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
LK+ G E A+ K+ + ID VG K+L VL M G +AACG
Sbjct: 208 LKS-LGASRVLPRDEFAESRPLEKQVWAGAID----TVGDKVLAKVLAQMNYGGCVAACG 262
Query: 180 MISQYNLDKPEGVHNLMYLVSKRLRMEG 207
+ + L +M + + +R++G
Sbjct: 263 LAGGFTLPT-----TVMPFILRNVRLQG 285
>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (
Tp53i3,Pig3)
Length = 354
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 65 MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
+TA+ + V + + G+ V I A VG Q ++ G + +AGS+ K+ + + K
Sbjct: 148 LTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KL 206
Query: 125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQY 184
G FNYK+E A LK G+++ + +GG + + + + GR G++
Sbjct: 207 GAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGG 266
Query: 185 NLDKPEGVHNLMYLVSKRLRMEGFIVLD---------HYHLYPKFLEMIIPH 227
+++ P L SK L G ++ L F E I+PH
Sbjct: 267 DINGP--------LFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPH 310
>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|B Chain B, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|C Chain C, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|D Chain D, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|E Chain E, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
Length = 338
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 65 MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
+TA+ + V + + G+ V I A VG Q ++ G + +AGS+ K+ + + K
Sbjct: 132 LTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KL 190
Query: 125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQY 184
G FNYK+E A LK G+++ + +GG + + + + GR G++
Sbjct: 191 GAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGG 250
Query: 185 NLDKPEGVHNLMYLVSKRLRMEGFIVLD---------HYHLYPKFLEMIIPH 227
+++ P L SK L G ++ L F E I+PH
Sbjct: 251 DINGP--------LFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPH 294
>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From
Rhizobium Etli Cfn 42
pdb|4DUP|B Chain B, Crystal Structure Of A Quinone Oxidoreductase From
Rhizobium Etli Cfn 42
Length = 353
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 98/259 (37%), Gaps = 30/259 (11%)
Query: 23 GDLVWGMT---GWEEYSLITAPHLF-------KIQHTDVPLSYYTGILGMPGMTAYVGFY 72
GD V G+ + EY L+ A + ++ +P +++T + +
Sbjct: 110 GDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFT---------VWANLF 160
Query: 73 EVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNY 132
+ GE V I + +G Q A+ G V +AGS K + + + G NY
Sbjct: 161 QXAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RLGAKRGINY 219
Query: 133 KEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGV 192
+ E D A +K +G+DI + +G + + ++ G ++ + +K
Sbjct: 220 RSE-DFAAVIKAETGQGVDIILDXIGAAYFERNIASLAKDGCLSIIAFLGGAVAEK---- 274
Query: 193 HNLMYLVSKRLRMEGFIVL-----DHYHLYPKFLEMIIPHIKEGKLVYVEDMAEGLESAP 247
NL + KRL + G + + L + P ++ G + V E
Sbjct: 275 VNLSPIXVKRLTVTGSTXRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVA 334
Query: 248 AALIGLFSGQNVGKQVVAV 266
A L G +VGK + V
Sbjct: 335 DAHRLLEEGSHVGKVXLTV 353
>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWB|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
Length = 334
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 55 YYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK 114
Y G+L + +TA E K G+ V + AA+G VG ++ Q K+ G + + A +
Sbjct: 126 YAAGLLQV--LTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD 183
Query: 115 DKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGR 174
+K+ + K ++G + N +E L LK +G+D F++VG + L +K +G
Sbjct: 184 EKLKIAK-EYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKGV 242
Query: 175 IAACGMIS 182
+ G S
Sbjct: 243 FVSFGNAS 250
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 13/190 (6%)
Query: 6 GYGVAKVLDSENPEFNKGDLVWGMTG----WEEYSLITAPHLFKIQHTDVPLSY-YTGIL 60
G GV + + E F GD V TG + E ++ +L K+ + +S+ L
Sbjct: 65 GAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADS---VSFEQAAAL 121
Query: 61 GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
+ G+T + K GE + AA+G VG L Q+AK LG ++G+ S +K
Sbjct: 122 MLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHA 181
Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKL----LDAVLPNMKIRGRIA 176
K G E +Y E L+ + + ++ VG LD+V P +
Sbjct: 182 K-ALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGN 240
Query: 177 ACGMISQYNL 186
A G +S NL
Sbjct: 241 ASGPVSGVNL 250
>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
pdb|3FBG|B Chain B, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
Length = 346
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 22/158 (13%)
Query: 8 GVAKVLDSENPEFNKGDLVW-----GMTGWE-EYSLIT------AP-HLFKIQHTDVPLS 54
GV + + +E FN+GD+V+ G EY LI AP ++ Q +PL
Sbjct: 69 GVVESVGNEVTMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPL- 127
Query: 55 YYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK 114
TGI + G + G+ + I +G VG + Q AK G V+ +A
Sbjct: 128 --TGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN 185
Query: 115 DKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDI 152
+ ++ K K G D N+KE + L ++ +GI++
Sbjct: 186 ETIEWTK-KMGADIVLNHKE-----SLLNQFKTQGIEL 217
>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
pdb|4A27|B Chain B, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
Length = 349
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 13/157 (8%)
Query: 8 GVAKVLDSENPEFNKGDLVWGM---TGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPG 64
G+ + L + GD V W E ++KI D+ S M
Sbjct: 70 GIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPD-DMSFSEAAA-FPMNF 127
Query: 65 MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
+TAYV +EV + + G V + +A G VGQ V Q + V S K + +K+
Sbjct: 128 VTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSV 187
Query: 125 G--FDEAFNYKEEADLNAALKRYFPEGIDIYFENVGG 159
FD +Y +E +KR EG+DI + + G
Sbjct: 188 THLFDRNADYVQE------VKRISAEGVDIVLDCLCG 218
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 23/211 (10%)
Query: 65 MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDK---VDLLK 121
+TAY ++ + GE + + +A+G VG Q A+ LG V +A S+DK V+L +
Sbjct: 331 LTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATA-SEDKWQAVELSR 389
Query: 122 NKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMI 181
+++++ L A R G+D+ ++ G+ DA L + GR G
Sbjct: 390 EHLASSRTCDFEQQF-LGATGGR----GVDVVLNSLAGEFADASLRMLPRGGRFLELG-- 442
Query: 182 SQYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYHLYPKFL-EMI--IPHIKEGKLVY-VE 237
+ ++ P V + VS + D P+ + EM+ + + EG+++ +
Sbjct: 443 -KTDVRDPVEVADAHPGVS-------YQAFDTVEAGPQRIGEMLHELVELFEGRVLEPLP 494
Query: 238 DMAEGLESAPAALIGLFSGQNVGKQVVAVAP 268
A + AP AL L ++VGK V+ + P
Sbjct: 495 VTAWDVRQAPEALRHLSQARHVGKLVLTMPP 525
>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
pdb|1QOR|B Chain B, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
Length = 327
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 62 MPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLK 121
+ G+T Y + K E AA+G VG + Q+AK LG ++G+ G+ K
Sbjct: 123 LKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL 182
Query: 122 NKFGFDEAFNYKEEADLNAALKRYF-PEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
K G + NY+EE DL LK + + + +++VG + L ++ RG + + G
Sbjct: 183 -KAGAWQVINYREE-DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGN 240
Query: 181 IS 182
S
Sbjct: 241 SS 242
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 61 GMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLL 120
G+ +TA+ EV GE V I +A+G VG AK++G + +AGS K ++L
Sbjct: 20 GVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML 79
Query: 121 KNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGM 180
++ G + + + + L+ G+D+ ++ G+ + + + GR G
Sbjct: 80 -SRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGK 138
Query: 181 ISQYNLDKPEGVHNLMYLVSKRLRMEGFIVLD-------HYHLYPKFLEMIIPHIKEGKL 233
Y D G+ L + F V+D Y + L+ I+ H+ +GKL
Sbjct: 139 KDVYA-DASLGLAALA-------KSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKL 190
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 22/234 (9%)
Query: 28 GMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISA 87
G+ W ++ + L ++ +D+PL LG+ TAY + + G+ V +A
Sbjct: 105 GLGTWRTEAVFSEEALIQV-PSDIPLQS-AATLGVNPCTAYRMLMDFEQLQPGDSVIQNA 162
Query: 88 ASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAA-LKRYF 146
++ VGQ V Q A LG + + + L ++ A + E +L +K +F
Sbjct: 163 SNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFF 222
Query: 147 PE--GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR 204
+ + VGGK +L + G M++ + K V ++ L+ K L+
Sbjct: 223 KDMPQPRLALNCVGGKSSTELLRQLARGGT-----MVTYGGMAKQPVVASVSLLIFKDLK 277
Query: 205 MEGFIV--LDHYHLYPKFLEMIIP---HIKEGKL-------VYVEDMAEGLESA 246
+ GF + H +F E+I+ I+ G+L V ++D LE++
Sbjct: 278 LRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEAS 331
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 22/234 (9%)
Query: 28 GMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISA 87
G+ W ++ + L ++ +D+PL LG+ TAY + + G+ V +A
Sbjct: 118 GLGTWRTEAVFSEEALIQV-PSDIPLQS-AATLGVNPCTAYRMLMDFEQLQPGDSVIQNA 175
Query: 88 ASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAA-LKRYF 146
++ VGQ V Q A LG + + + L ++ A + E +L +K +F
Sbjct: 176 SNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFF 235
Query: 147 PE--GIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQYNLDKPEGVHNLMYLVSKRLR 204
+ + VGGK +L + G M++ + K V ++ L+ K L+
Sbjct: 236 KDMPQPRLALNCVGGKSSTELLRQLARGGT-----MVTYGGMAKQPVVASVSLLIFKDLK 290
Query: 205 MEGFIV--LDHYHLYPKFLEMIIP---HIKEGKL-------VYVEDMAEGLESA 246
+ GF + H +F E+I+ I+ G+L V ++D LE++
Sbjct: 291 LRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEAS 344
>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3UOG|B Chain B, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 363
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 64 GMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNK 123
G+TA+ E + G+ V + +G V Q AK G V+ ++ S++K+D
Sbjct: 174 GLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDR-AFA 231
Query: 124 FGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQ 183
G D N EE + G D E GG L L + GRI+ G++
Sbjct: 232 LGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEG 291
Query: 184 YNLDKPEG 191
+ + P G
Sbjct: 292 FEVSGPVG 299
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 75/189 (39%), Gaps = 29/189 (15%)
Query: 15 SENPEFNKGDLVWGMTGW----------EEYSLITAPHLFKIQHTDVPL---SYYTGILG 61
SE+P F+ G V +TGW E + + L + P S I+G
Sbjct: 72 SEDPRFHAGQEVL-LTGWGVGENHWGGLAERARVKGDWLVAL-----PAGLSSRNAXIIG 125
Query: 62 MPGMTAYVGFYEV----CSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV 117
G TA + + P+ GE V ++ ASG VG LG V +G +
Sbjct: 126 TAGFTAXLCVXALEDAGIRPQDGEVV-VTGASGGVGSTAVALLHKLGYQVAAVSGRESTH 184
Query: 118 DLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAA 177
LK+ G + + E A+ K+ + ID VG K+L VL G +AA
Sbjct: 185 GYLKS-LGANRILSRDEFAESRPLEKQLWAGAID----TVGDKVLAKVLAQXNYGGCVAA 239
Query: 178 CGMISQYNL 186
CG+ + L
Sbjct: 240 CGLAGGFAL 248
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 14/209 (6%)
Query: 66 TAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF- 124
TAY + GE V I + SG VGQ A GC V + GS +K L+ +F
Sbjct: 1654 TAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFP 1713
Query: 125 GFDEA--FNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMIS 182
DE N ++ + L+ +G+D+ ++ + L A + + GR G
Sbjct: 1714 QLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIG--- 1770
Query: 183 QYNLDKPEGVHNLMYLVSKRLRMEGFIVLDHYH-----LYPKFLEMIIPHIKEGKLVYVE 237
+++L + ++L K + G I+LD + + E++ I+EG + ++
Sbjct: 1771 KFDLSNNHALGMAVFL--KNVTFHG-ILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLK 1827
Query: 238 DMAEGLESAPAALIGLFSGQNVGKQVVAV 266
AA + G+++GK V+ V
Sbjct: 1828 CTVFPRTKVEAAFRYMAQGKHIGKVVIQV 1856
>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
pdb|3GAZ|B Chain B, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
Length = 343
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 31/193 (16%)
Query: 4 ISGYGVAKVLDSENPE---FNKGDLVWGMTGW--------------EEYSLITAPHLFKI 46
I G +A + + PE F GD V+G+TG + L + P
Sbjct: 66 ILGXDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTX 125
Query: 47 QHTDV-PLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGC 105
+ V PL + +TA+ G + + G+ V I G VG + Q A G
Sbjct: 126 RQASVLPLVF---------ITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA 176
Query: 106 YVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAV 165
V +A D ++ +++ G +E D A + +G D+ ++ +GG +LDA
Sbjct: 177 RVFATARGSD-LEYVRD-LGATPIDASREPEDYAA--EHTAGQGFDLVYDTLGGPVLDAS 232
Query: 166 LPNMKIRGRIAAC 178
+K G + +C
Sbjct: 233 FSAVKRFGHVVSC 245
>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|B Chain B, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|C Chain C, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|D Chain D, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
Length = 467
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 52/143 (36%), Gaps = 21/143 (14%)
Query: 63 PGMTAYVGFYEVCSP-----KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV 117
PG+ + ++ S K G+ V I ASG +G QFA G + S K
Sbjct: 225 PGLVNSTAYRQLVSRNGAAMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKA 284
Query: 118 DLLKN--------------KFGFDEAFNYKEEADLNAALKRYFP--EGIDIYFENVGGKL 161
++ ++ KF DE +E R E IDI FE+ G +
Sbjct: 285 EICRSMGAEAIIDRNAEGYKFWKDEHTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRET 344
Query: 162 LDAVLPNMKIRGRIAACGMISQY 184
A + + G I C S Y
Sbjct: 345 FGASVYVTRKGGTITTCASTSGY 367
>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|B Chain B, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|C Chain C, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|D Chain D, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
Length = 347
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEADLN 139
G V IS A+G +G L Q+AK +G V+G G + K +L ++ G + ++ +E D+
Sbjct: 170 GHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS-IGGEVFIDFTKEKDIV 228
Query: 140 AAL 142
A+
Sbjct: 229 GAV 231
>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
Length = 456
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 25/145 (17%)
Query: 63 PGMTAYVGFYEVCSP-----KHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKV 117
PG+ + ++ S K G+ V I ASG +G QFA G + S K
Sbjct: 207 PGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKA 266
Query: 118 DLLKN--------------KFGFDEAFNYKEEADLNAALKRYFP----EGIDIYFENVGG 159
++ + +F DE N ++ + KR E IDI FE+ G
Sbjct: 267 EICRAMGAEAIIDRNAEGYRFWKDE--NTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR 324
Query: 160 KLLDAVLPNMKIRGRIAACGMISQY 184
+ A + + G I C S Y
Sbjct: 325 ETFGASVFVTRKGGTITTCASTSGY 349
>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase From
Bacillus Thuringiensis
Length = 340
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 28 GMTGWEEYSLITAPHLFKIQHTDVPLSYYTGILGMPGMTAYVGFYEVCSPKHGECVFISA 87
G W+EY +A F + D + + + +TA+V E + + + + ++A
Sbjct: 95 GEGTWQEYVKTSAD--FVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNA 152
Query: 88 ASGAVGQLVGQFAKLLGCYVVG-SAGSKDKVDLLK 121
A+G L Q +++L ++ + +K +LL+
Sbjct: 153 CGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR 187
>pdb|1VDY|A Chain A, Nmr Structure Of The Hypothetical Enth-Vhs Domain
At3g16270 From Arabidopsis Thaliana
pdb|2DCP|A Chain A, Fully Automated Nmr Structure Determination Of The
Enth-Vhs Domain At3g16270 From Arabidopsis Thaliana
Length = 140
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 95 LVGQFAKLLGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEAD------LNAALKRYFPE 148
+V Q A L Y VG +GS+ + ++ +N F+YK D LN A++ E
Sbjct: 64 IVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHE 123
Query: 149 GIDIYFENVGG 159
I F G
Sbjct: 124 TISAIFSEENG 134
>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|M Chain M, Architecture Of Mammalian Fatty Acid Synthase
Length = 295
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 65 MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
+TAY+ + + GE V + AA+GA+G Q A+ +G V+ +A +K+ L
Sbjct: 112 LTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPLAL 169
Query: 125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACGMISQY 184
G +EA Y E + A G+D+ E V GK ++ L + GR+ I
Sbjct: 170 GAEEAATYAEVPERAKAWG-----GLDLVLE-VRGKEVEESLGLLAHGGRLVYIAPIPPL 223
Query: 185 NLDK 188
L +
Sbjct: 224 RLMR 227
>pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
pdb|4A7P|B Chain B, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
Length = 446
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 218 PKFLEMIIPHIKEGKLVYVEDMAEGLESAPAALIGL 253
P ++ ++K G+L + D+AEG++ A A I +
Sbjct: 57 PGLDALVASNVKAGRLSFTTDLAEGVKDADAVFIAV 92
>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 65 MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
+TAY+ + + GE V + AA+GA+G Q A+ +G V+ +A +K+ L
Sbjct: 112 LTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPLAL 169
Query: 125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVGGKLLDAVLPNMKIRGRIAACG 179
G +EA Y E + A G+D+ E V GK ++ L + GR+ G
Sbjct: 170 GAEEAATYAEVPERAKAWG-----GLDLVLE-VRGKEVEESLGLLAHGGRLVYIG 218
>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|C Chain C, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|D Chain D, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
Length = 266
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 80 GECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSK-DKV-----DLLKNKFGFDEAFNYK 133
G ++ A+G +G+ + + G +VG G++ DK+ DL K+ F F + +
Sbjct: 27 GRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSDR 85
Query: 134 EEADLNAALKRYFPEGIDIYFENVG 158
+ A + EGIDI N G
Sbjct: 86 KSIKQLAEVAEREMEGIDILVNNAG 110
>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 65 MTAYVGFYEVCSPKHGECVFISAASGAVGQLVGQFAKLLGCYVVGSAGSKDKVDLLKNKF 124
+TAY+ + + GE V + AA+GA+G Q A+ G V+ +A +K+ L
Sbjct: 112 LTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAXGLRVLAAASRPEKLA-LPLAL 169
Query: 125 GFDEAFNYKEEADLNAALKRYFPEGIDIYFENVG 158
G +EA Y E + A G+D+ E G
Sbjct: 170 GAEEAATYAEVPERAKAWG-----GLDLVLEVRG 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,621,396
Number of Sequences: 62578
Number of extensions: 384962
Number of successful extensions: 1062
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 51
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)