BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024412
         (268 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4LDF9|OEP37_PEA Outer envelope pore protein 37, chloroplastic OS=Pisum sativum
           GN=OEP37 PE=1 SV=1
          Length = 329

 Score =  309 bits (792), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/245 (62%), Positives = 192/245 (78%), Gaps = 11/245 (4%)

Query: 14  PNHMVPPPLDPQPQPSPSPPQPQQQRTSSLFSFPSRPALRVTSEFDSDSSIFLHKISCKL 73
           PN+   P +DPQP PS +P       +  +FSFP RPALR+T+EFDS+S++F HKISCK 
Sbjct: 8   PNY--SPEVDPQPLPSTNPIH-----SRPIFSFPKRPALRITTEFDSESTVFFHKISCKF 60

Query: 74  FDSLAKLKVSFQNDNKGQIFEPQLAFTSKHLSLHYDLEEQNAFVKSSFDVGPKLHFRAAH 133
            DSLAKLK +F N++KG+I EPQ++F SK+LSLHYDLE+ +A VKSS DVGPKL     H
Sbjct: 61  LDSLAKLKFAFHNNSKGEIAEPQISFVSKYLSLHYDLEDHSALVKSSVDVGPKLKLIGTH 120

Query: 134 DVKAQQGEVGVVANLGDPGYALELSSPVPYVGYPKATFKFPLGEVSLVE----REEEEVK 189
           DVKAQQGEV +VANL DPGYAL+LS+P+P +  PKATFKFP GE+SL E     E+E+VK
Sbjct: 121 DVKAQQGEVTMVANLDDPGYALQLSTPLPSIALPKATFKFPQGEISLQEINDHDEDEQVK 180

Query: 190 KTLSISGIAKGQILNGICTAQYEEEDLKLRYCYKDEALSFIPTISLPSNALSFALKRQFS 249
            +LS+SG  KGQ+L G+CTAQY++++ KLRY YKD+ +SF+P +SLPSNALSFA KR+F 
Sbjct: 181 NSLSVSGTLKGQLLKGLCTAQYKDQEFKLRYRYKDDEMSFLPILSLPSNALSFAFKRRFG 240

Query: 250 PSDKL 254
           PSDKL
Sbjct: 241 PSDKL 245


>sp|O80565|OEP37_ARATH Outer envelope pore protein 37, chloroplastic OS=Arabidopsis
           thaliana GN=OEP37 PE=1 SV=2
          Length = 343

 Score =  291 bits (744), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 155/260 (59%), Positives = 199/260 (76%), Gaps = 7/260 (2%)

Query: 1   MVEPSPPSPSLQIPNHMVPPPLDPQPQPSPSPPQPQQQRTSSLFSF---PSRPALRVTSE 57
           M +PS  +P+L  P     P    Q Q   S   P  +   S  SF    +RP LRVTSE
Sbjct: 1   MADPSSQNPNLATPPPPSSPSPTHQIQSGTSELSPPSRPPCSTLSFLKTANRPKLRVTSE 60

Query: 58  FDSDSSIFLHKISCKLFDSLAKLKVSFQNDNKGQIFEPQLAFTSKHLSLHYDLEEQNAFV 117
           FDSDS +FL+K+SCKLFD+LAKLK+SFQN+++ +I +PQ++FTSKH+S+ YD+EE+N F+
Sbjct: 61  FDSDSLLFLNKVSCKLFDNLAKLKLSFQNNSQREISQPQVSFTSKHVSVLYDVEEKNTFI 120

Query: 118 KSSFDVGPKLHFRAAHDVKAQQGEVGVVANLGDPGYALELSSPVPYVGYPKATFKFPLGE 177
           KS+ DV P+L  RA H+VKAQQGEV + ANL +PGY+LELSSPVP +GYP+AT KFPLGE
Sbjct: 121 KSTLDVHPRLQLRALHNVKAQQGEVAMEANLTEPGYSLELSSPVP-IGYPRATLKFPLGE 179

Query: 178 VSL---VEREEEEVKKTLSISGIAKGQILNGICTAQYEEEDLKLRYCYKDEALSFIPTIS 234
           +SL    E EEE+ K+TLS++GI K Q++NG+CTA Y +E+L+LRY YKD+ALSFIP+IS
Sbjct: 180 ISLQEKDEEEEEKQKRTLSVNGILKRQVMNGVCTALYTDEELRLRYAYKDDALSFIPSIS 239

Query: 235 LPSNALSFALKRQFSPSDKL 254
           LPSNA SFA KR+FSPSDKL
Sbjct: 240 LPSNAASFAFKRRFSPSDKL 259


>sp|Q6A037|N4BP1_MOUSE NEDD4-binding protein 1 OS=Mus musculus GN=N4bp1 PE=1 SV=2
          Length = 893

 Score = 32.3 bits (72), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 3   EPSPPSPSLQIPNHMVPPPLDPQPQPSPSPPQPQQQRTSSLFSFPSR------PALRVTS 56
           +P   SPS Q+ N+   PP  P+ Q S SP  PQQ   ++L + PS       PA R ++
Sbjct: 792 DPGFRSPSTQVANNSHQPP--PRIQTSSSPWLPQQSHFTALATLPSMQQNPPLPAQRSSA 849

Query: 57  EFDSDSSIFLHKISCKLF-DSLAKLKV 82
           E        L +   K+F DS  KLK+
Sbjct: 850 ETSE-----LREALLKIFPDSEQKLKI 871


>sp|Q02297|NRG1_HUMAN Pro-neuregulin-1, membrane-bound isoform OS=Homo sapiens GN=NRG1
           PE=1 SV=3
          Length = 640

 Score = 31.2 bits (69), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 14/176 (7%)

Query: 47  PSRPALRVTSEFDSDSSIFLHKISCKLFDSLAKLKVSFQNDNK---GQIFEPQLAFTSKH 103
           P +  LR+     +DS  ++ K+  KL +  A   ++    N+   G     + A+ S  
Sbjct: 92  PGKSELRINKASLADSGEYMCKVISKLGNDSASANITIVESNEIITGMPASTEGAYVSSE 151

Query: 104 LSLHYDLEEQNAFVKSSFDVGPKLHFRAAHDVKAQQGEVGVVANLGDPGYALELSSPVPY 163
             +   +  + A   ++           +H VK  + E     N G+     +LS+P  Y
Sbjct: 152 SPIRISVSTEGA---NTSSSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRY 208

Query: 164 V-----GYPKA--TFKFPLGEVSLVEREEEEVKKTLSISGIAKGQILNGI-CTAQY 211
           +     G+  A  T   P+   +  + EE   K+ L+I+GI    ++ GI C   Y
Sbjct: 209 LCKCQPGFTGARCTENVPMKVQNQEKAEELYQKRVLTITGICIALLVVGIMCVVAY 264


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.135    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,392,736
Number of Sequences: 539616
Number of extensions: 4684605
Number of successful extensions: 47094
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 354
Number of HSP's that attempted gapping in prelim test: 35986
Number of HSP's gapped (non-prelim): 8103
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)