Query 024412
Match_columns 268
No_of_seqs 47 out of 49
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 04:24:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA01732 proline-rich protein 95.2 0.025 5.5E-07 46.0 3.8 20 74-93 61-80 (94)
2 KOG1924 RhoA GTPase effector D 91.0 0.35 7.5E-06 51.9 5.2 19 123-141 658-676 (1102)
3 PF01690 PLRV_ORF5: Potato lea 88.9 0.31 6.8E-06 48.8 2.8 8 50-57 40-47 (465)
4 KOG1924 RhoA GTPase effector D 84.0 1.1 2.4E-05 48.3 3.8 11 77-87 659-669 (1102)
5 PRK09752 adhesin; Provisional 79.8 1.7 3.7E-05 48.2 3.5 18 245-262 1172-1189(1250)
6 KOG1830 Wiskott Aldrich syndro 75.6 3.1 6.8E-05 42.2 3.8 10 17-26 385-394 (518)
7 PRK09752 adhesin; Provisional 70.6 4.6 0.0001 44.9 3.9 6 174-179 1129-1134(1250)
8 PF01690 PLRV_ORF5: Potato lea 67.7 3.8 8.3E-05 41.3 2.4 9 66-74 41-49 (465)
9 cd08677 C2A_Synaptotagmin-13 C 64.6 7.7 0.00017 32.0 3.2 71 103-173 4-82 (118)
10 KOG2675 Adenylate cyclase-asso 64.3 4 8.7E-05 41.3 1.8 54 93-147 323-377 (480)
11 PRK15240 resistance to complem 60.7 10 0.00022 33.1 3.4 40 190-235 27-67 (185)
12 PHA03211 serine/threonine kina 60.4 10 0.00022 36.6 3.7 15 7-21 25-42 (461)
13 KOG1923 Rac1 GTPase effector F 59.6 13 0.00028 40.0 4.5 12 227-238 501-512 (830)
14 COG5178 PRP8 U5 snRNP spliceos 55.2 9.1 0.0002 43.6 2.6 25 48-72 40-64 (2365)
15 PF06316 Ail_Lom: Enterobacter 51.2 10 0.00022 34.6 1.9 25 214-238 49-74 (199)
16 PF13502 AsmA_2: AsmA-like C-t 49.4 1.4E+02 0.0031 24.2 8.2 69 193-262 91-181 (220)
17 smart00021 DAX Domain present 45.3 22 0.00048 28.5 2.8 46 215-263 3-49 (83)
18 PF02711 Pap_E4: E4 protein; 44.5 27 0.00059 28.4 3.2 12 53-64 41-52 (95)
19 PF14173 ComGG: ComG operon pr 44.2 31 0.00067 26.8 3.4 38 162-199 35-72 (95)
20 KOG1945 Protein phosphatase 1 44.2 24 0.00052 35.0 3.4 20 102-121 119-138 (377)
21 PHA03417 E4 protein; Provision 43.5 22 0.00048 30.1 2.7 10 54-63 61-70 (118)
22 PF00778 DIX: DIX domain; Int 41.1 27 0.00059 27.6 2.7 47 215-264 3-51 (84)
23 PRK15319 AIDA autotransporter- 39.4 17 0.00036 42.5 1.8 68 19-91 1688-1755(2039)
24 PHA03247 large tegument protei 39.0 52 0.0011 40.2 5.5 22 94-115 3001-3022(3151)
25 PHA03211 serine/threonine kina 38.4 28 0.0006 33.7 2.9 9 141-149 210-218 (461)
26 KOG4462 WASP-interacting prote 36.0 55 0.0012 33.0 4.5 37 54-90 385-421 (437)
27 PHA03247 large tegument protei 33.2 76 0.0016 38.9 5.6 13 74-86 2964-2976(3151)
28 cd07694 Ig2_CD4 Second immunog 33.0 1.1E+02 0.0025 24.6 5.1 64 154-220 16-81 (88)
29 PF13793 Pribosyltran_N: N-ter 31.5 19 0.00042 29.2 0.5 43 156-198 15-57 (116)
30 PF07661 MORN_2: MORN repeat v 29.8 82 0.0018 17.6 2.8 22 203-224 1-22 (22)
31 KOG1922 Rho GTPase effector BN 28.1 1.1E+02 0.0023 31.9 5.2 9 53-61 381-389 (833)
32 PF01698 FLO_LFY: Floricaula / 27.8 20 0.00043 35.7 0.0 16 95-110 69-84 (386)
33 KOG1785 Tyrosine kinase negati 27.6 63 0.0014 33.3 3.4 14 41-54 544-557 (563)
34 PF07354 Sp38: Zona-pellucida- 24.5 1.3E+02 0.0027 29.0 4.6 56 167-224 13-77 (271)
35 cd00034 ChSh Chromo Shadow Dom 23.5 1.2E+02 0.0026 21.8 3.4 20 214-233 14-33 (54)
36 PF08142 AARP2CN: AARP2CN (NUC 22.6 68 0.0015 25.0 2.1 16 189-204 45-60 (85)
37 smart00785 AARP2CN AARP2CN (NU 22.5 57 0.0012 25.4 1.6 18 187-204 41-58 (83)
38 PLN03132 NADH dehydrogenase (u 22.0 44 0.00095 33.8 1.1 10 24-33 16-25 (461)
39 PF02928 zf-C5HC2: C5HC2 zinc 21.8 31 0.00066 24.6 0.0 16 213-228 36-51 (54)
40 PRK09408 ompX outer membrane p 21.6 67 0.0014 28.0 2.0 45 190-239 26-72 (171)
41 COG2885 OmpA Outer membrane pr 21.2 62 0.0013 27.3 1.7 39 56-94 85-131 (190)
42 PRK14751 tetracycline resistan 20.9 55 0.0012 21.8 1.1 18 247-264 9-26 (28)
43 COG0505 CarA Carbamoylphosphat 20.9 73 0.0016 31.7 2.4 51 136-199 23-81 (368)
44 PF15152 Kisspeptin: Kisspepti 20.2 38 0.00083 27.2 0.2 33 167-221 46-78 (78)
No 1
>PHA01732 proline-rich protein
Probab=95.16 E-value=0.025 Score=46.03 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=15.7
Q ss_pred ccccceeEEeeecCCCCCCC
Q 024412 74 FDSLAKLKVSFQNDNKGQIF 93 (268)
Q Consensus 74 l~GlAKLrLsfq~D~sG~~~ 93 (268)
..|.|.||+--|+..+|+++
T Consensus 61 a~gTasLrIpkqtg~~g~~s 80 (94)
T PHA01732 61 AGGTASLRIPKQSGTQGSIS 80 (94)
T ss_pred ccCcceeEeecccccccccc
Confidence 46888899988888888754
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.01 E-value=0.35 Score=51.90 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=7.9
Q ss_pred cCcceeeeeecccccccce
Q 024412 123 VGPKLHFRAAHDVKAQQGE 141 (268)
Q Consensus 123 lg~~l~lk~~hDvKAqQGE 141 (268)
+--+|.++.+...|++.++
T Consensus 658 lfakL~~~Fatq~k~~k~~ 676 (1102)
T KOG1924|consen 658 LFAKLALKFATQPKVKKEQ 676 (1102)
T ss_pred HHHHHHHHhhccccccccc
Confidence 3334444444444444433
No 3
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=88.90 E-value=0.31 Score=48.81 Aligned_cols=8 Identities=13% Similarity=0.638 Sum_probs=3.7
Q ss_pred Cceeeeee
Q 024412 50 PALRVTSE 57 (268)
Q Consensus 50 p~lrvtsE 57 (268)
|-.+|.+.
T Consensus 40 p~~~I~tr 47 (465)
T PF01690_consen 40 PQTKISTR 47 (465)
T ss_pred cceeeecc
Confidence 44445444
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=83.99 E-value=1.1 Score=48.30 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=5.4
Q ss_pred cceeEEeeecC
Q 024412 77 LAKLKVSFQND 87 (268)
Q Consensus 77 lAKLrLsfq~D 87 (268)
+|||++-|.+-
T Consensus 659 fakL~~~Fatq 669 (1102)
T KOG1924|consen 659 FAKLALKFATQ 669 (1102)
T ss_pred HHHHHHHhhcc
Confidence 45555555443
No 5
>PRK09752 adhesin; Provisional
Probab=79.84 E-value=1.7 Score=48.16 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=12.2
Q ss_pred ccccCCCCcceeeeeccc
Q 024412 245 KRQFSPSDKLRLELSLFP 262 (268)
Q Consensus 245 KR~F~psdKLSY~~~f~~ 262 (268)
+|+|-|-=++.|||+|..
T Consensus 1172 ~~~~QPYleaNW~Hn~~~ 1189 (1250)
T PRK09752 1172 AVHVIPTLDLNYYHDPHS 1189 (1250)
T ss_pred CceEeEEEEEEEEEcCCC
Confidence 466777777777777643
No 6
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=75.64 E-value=3.1 Score=42.16 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=6.7
Q ss_pred cCCCCCCCCC
Q 024412 17 MVPPPLDPQP 26 (268)
Q Consensus 17 ~~~pp~~p~p 26 (268)
++|||++.+-
T Consensus 385 ~~~pphp~p~ 394 (518)
T KOG1830|consen 385 FLCPPHPLPQ 394 (518)
T ss_pred cCCCCCCCCc
Confidence 7887776543
No 7
>PRK09752 adhesin; Provisional
Probab=70.65 E-value=4.6 Score=44.94 Aligned_cols=6 Identities=33% Similarity=0.545 Sum_probs=2.3
Q ss_pred eCCcee
Q 024412 174 PLGEVS 179 (268)
Q Consensus 174 P~Gevs 179 (268)
|+.||.
T Consensus 1129 PQAQLi 1134 (1250)
T PRK09752 1129 PQAQVI 1134 (1250)
T ss_pred eeEEEE
Confidence 333433
No 8
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=67.71 E-value=3.8 Score=41.33 Aligned_cols=9 Identities=33% Similarity=0.143 Sum_probs=4.2
Q ss_pred eeccccccc
Q 024412 66 LHKISCKLF 74 (268)
Q Consensus 66 ~NkVSA~~l 74 (268)
.++|+++-+
T Consensus 41 ~~~I~tr~n 49 (465)
T PF01690_consen 41 QTKISTREN 49 (465)
T ss_pred ceeeecccc
Confidence 344555443
No 9
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=64.57 E-value=7.7 Score=32.00 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=51.0
Q ss_pred ceeeeeehhcccce--------eeeecccCcceeeeeecccccccceeEEEEecCCCCceeeecCCCCCCCCCcEEEEe
Q 024412 103 HLSLHYDLEEQNAF--------VKSSFDVGPKLHFRAAHDVKAQQGEVGVVANLGDPGYALELSSPVPYVGYPKATFKF 173 (268)
Q Consensus 103 ~~Sv~yD~e~rnAl--------v~~~~dlg~~l~lk~~hDvKAqQGEV~~~A~l~dp~yk~ELSS~vP~~glPRat~~F 173 (268)
+||+.||.....=. ++...--.+.+++....|-|.+.-+=++..++-||-|--.+.-.||...+++.|+.|
T Consensus 4 ~fsL~Y~~~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~ 82 (118)
T cd08677 4 HYSLSYDKQKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTL 82 (118)
T ss_pred EEEEEEcCcCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEE
Confidence 57888888652111 111111367888888776555555778888999999999999999999999998876
No 10
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=64.26 E-value=4 Score=41.34 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=36.3
Q ss_pred CCCeeeeeecceeeeeehhcccceeeeecccCcceeeeeecc-cccccceeEEEEe
Q 024412 93 FEPQLAFTSKHLSLHYDLEEQNAFVKSSFDVGPKLHFRAAHD-VKAQQGEVGVVAN 147 (268)
Q Consensus 93 ~~P~~~~vsK~~Sv~yD~e~rnAlv~~~~dlg~~l~lk~~hD-vKAqQGEV~~~A~ 147 (268)
..|.+-|..|..-|-|-..++| +|--.+|+..++.+---.| +-.-+|-|+-|+=
T Consensus 323 ~pp~~ELeGkkW~VEnq~~~~~-~Vi~~~e~kqsvyIykC~~s~iqIkGKvNsItl 377 (480)
T KOG2675|consen 323 KPPVKELEGKKWRVENQENNKN-LVIDDAELKQSVYIYKCSNSTIQIKGKVNSITL 377 (480)
T ss_pred CCCceeeccceEEEeeecCCcc-eeeeeccccceEEEEeccceEEEEeceeeeEEe
Confidence 4578889999999988775555 5556788877776544333 3344677776654
No 11
>PRK15240 resistance to complement killing; Provisional
Probab=60.67 E-value=10 Score=33.14 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=28.1
Q ss_pred ceeEEeceecccccCceEEeEeecccceeeeeee-cCceeeeeeccC
Q 024412 190 KTLSISGIAKGQILNGICTAQYEEEDLKLRYCYK-DEALSFIPTISL 235 (268)
Q Consensus 190 r~LSv~Gi~k~~~lnGv~tA~Y~d~~~~LrY~YK-Deels~iPsiSl 235 (268)
.++|+ |...+++- | .-+-+.+||||+|. |+.+.+|.|++.
T Consensus 27 ~t~s~-GYaq~~~~-~----~~~~~G~nlkYrYe~~~~~gvi~S~ty 67 (185)
T PRK15240 27 HSVSV-GYAQSRIE-H----FKDIRGVNLKYRYEAQTPLGLMASFSW 67 (185)
T ss_pred CEEEE-EEEEeecc-C----CCCCCceEEEEeecCCCceEEEEEEEE
Confidence 45554 56666652 2 22235589999999 899999999985
No 12
>PHA03211 serine/threonine kinase US3; Provisional
Probab=60.44 E-value=10 Score=36.64 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=7.2
Q ss_pred CCCcccccc---ccCCCC
Q 024412 7 PSPSLQIPN---HMVPPP 21 (268)
Q Consensus 7 ~~~~l~~p~---~~~~pp 21 (268)
|.-.-+|+| +|-.|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~ 42 (461)
T PHA03211 25 PETTTRCVFPPETFYNPP 42 (461)
T ss_pred CCCCCCCCCCCCCCCCCc
Confidence 333445665 444444
No 13
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=59.59 E-value=13 Score=39.99 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=5.9
Q ss_pred eeeeeeccCCCc
Q 024412 227 LSFIPTISLPSN 238 (268)
Q Consensus 227 ls~iPsiSlPSn 238 (268)
.+=++.+|.|++
T Consensus 501 ~~pme~Ls~edk 512 (830)
T KOG1923|consen 501 RSPMENLSEEDK 512 (830)
T ss_pred cCchhhcccchh
Confidence 344445555554
No 14
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=55.15 E-value=9.1 Score=43.59 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=17.4
Q ss_pred CCCceeeeeeecCCCceeeeccccc
Q 024412 48 SRPALRVTSEFDSDSSIFLHKISCK 72 (268)
Q Consensus 48 rrp~lrvtsEfDSe~sIF~NkVSA~ 72 (268)
+.+++-=.-+=||...+|.-++|-+
T Consensus 40 k~~~~~g~~~~~~g~~~~~~r~S~k 64 (2365)
T COG5178 40 KQLSIVGDILGHSGNPIYSLRVSDK 64 (2365)
T ss_pred ccHHHhhhhhhhcCCcceeeecccc
Confidence 3444444557788888888888876
No 15
>PF06316 Ail_Lom: Enterobacterial Ail/Lom protein; InterPro: IPR000758 Virulence-related outer membrane proteins are expressed in Gram-negative bacteria and are essential to bacterial survival within macrophages and for eukaryotic cell invasion. Members of this group include: PagC, required by Salmonella typhimurium for survival in macrophages and for virulence in mice [] Rck outer membrane protein of the S. typhimurium virulence plasmid [] Ail, a product of the Yersinia enterocolitica chromosome capable of mediating bacterial adherence to and invasion of epithelial cell lines [] OmpX from Escherichia coli that promotes adhesion to and entry into mammalian cells. It also has a role in the resistance against attack by the human complement system [] a Bacteriophage lambda outer membrane protein, Lom [] The crystal structure of OmpX from E. coli reveals that OmpX consists of an eight-stranded antiparallel all-next-neighbour beta barrel []. The structure shows two girdles of aromatic amino acid residues and a ribbon of nonpolar residues that attach to the membrane interior. The core of the barrel consists of an extended hydrogen-bonding network of highly conserved residues. OmpX thus resembles an inverse micelle. The OmpX structure shows that the membrane-spanning part of the protein is much better conserved than the extracellular loops. Moreover, these loops form a protruding beta sheet, the edge of which presumably binds to external proteins. It is suggested that this type of binding promotes cell adhesion and invasion and helps defend against the complement system. Although OmpX has the same beta-sheet topology as the structurally related outer membrane protein A (OmpA) IPR000498 from INTERPRO, their barrels differ with respect to the shear numbers and internal hydrogen-bonding networks.; GO: 0009279 cell outer membrane
Probab=51.22 E-value=10 Score=34.60 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=21.2
Q ss_pred ccceeeeeee-cCceeeeeeccCCCc
Q 024412 214 EDLKLRYCYK-DEALSFIPTISLPSN 238 (268)
Q Consensus 214 ~~~~LrY~YK-Deels~iPsiSlPSn 238 (268)
+-+||||+|. ||.+.+|=|+|+=+.
T Consensus 49 ~GvNvKYRYE~~d~lGvItSfSY~~~ 74 (199)
T PF06316_consen 49 RGVNVKYRYEFDDPLGVITSFSYASG 74 (199)
T ss_pred CccEEEEEEecccceeeeEEEEEeec
Confidence 4579999998 789999999998543
No 16
>PF13502 AsmA_2: AsmA-like C-terminal region
Probab=49.40 E-value=1.4e+02 Score=24.23 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=48.9
Q ss_pred EEeceecccccCceEEe---------------------EeecccceeeeeeecCceeeeeeccCCCcccccccccccCCC
Q 024412 193 SISGIAKGQILNGICTA---------------------QYEEEDLKLRYCYKDEALSFIPTISLPSNALSFALKRQFSPS 251 (268)
Q Consensus 193 Sv~Gi~k~~~lnGv~tA---------------------~Y~d~~~~LrY~YKDeels~iPsiSlPSnalS~aFKR~F~ps 251 (268)
+++|-+.-.+.+|.+.. ...=++++.+..++|+.+++ ..+.+-+..+.+..+=+++=.
T Consensus 91 ~l~G~~~~~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~-~~~~l~~~~~~i~~~G~~~l~ 169 (220)
T PF13502_consen 91 SLNGKGSFSVRNGKLNGIPILRDLDAAVTLNFSALKGGDLKFDDLSGDFSIKDGRLRI-DDLTLSTDRLRITGSGTVDLD 169 (220)
T ss_pred ceeeEEEEeccceEEeCCccccchhhhhcccccccccCCccccEEEEEEEEECCEEEE-eeeEEEccCEEEEEEEEEecC
Confidence 45666666666665544 13447789999999999998 668888888887777777655
Q ss_pred -Ccceeeeeccc
Q 024412 252 -DKLRLELSLFP 262 (268)
Q Consensus 252 -dKLSY~~~f~~ 262 (268)
++|.|..+...
T Consensus 170 ~~~ld~~~~~~~ 181 (220)
T PF13502_consen 170 TQTLDLNGNVRP 181 (220)
T ss_pred cccEEEEEEEEe
Confidence 67777666543
No 17
>smart00021 DAX Domain present in Dishevelled and axin. Domain of unknown function.
Probab=45.26 E-value=22 Score=28.48 Aligned_cols=46 Identities=13% Similarity=0.379 Sum_probs=37.3
Q ss_pred cceeeeeeecCceeeeeeccCCCcccccc-cccccCCCCcceeeeecccc
Q 024412 215 DLKLRYCYKDEALSFIPTISLPSNALSFA-LKRQFSPSDKLRLELSLFPF 263 (268)
Q Consensus 215 ~~~LrY~YKDeels~iPsiSlPSnalS~a-FKR~F~psdKLSY~~~f~~~ 263 (268)
+.++-|..-||++-..-.|--|...+.|+ ||+.|+=. .|+|-|-..
T Consensus 3 ~TkV~Y~~d~e~~PY~~~i~~~~~~iTLgdFK~~l~k~---~yry~FK~~ 49 (83)
T smart00021 3 ETKVIYHLDDEETPYLVKVPVPAERVTLGDFKEVLTKK---NYKYYFKSM 49 (83)
T ss_pred ceEEEEEeCCCCCceeEecCCCcCceEHHHHHHhhccC---CcEEEEEec
Confidence 45678889899999998999999888885 99999876 488877543
No 18
>PF02711 Pap_E4: E4 protein; InterPro: IPR003861 This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice variant, E1--E4, exists but the function of neither E4 nor E1--E4 is known [].
Probab=44.54 E-value=27 Score=28.39 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=7.1
Q ss_pred eeeeeecCCCce
Q 024412 53 RVTSEFDSDSSI 64 (268)
Q Consensus 53 rvtsEfDSe~sI 64 (268)
|.-++-||+.+-
T Consensus 41 R~~sd~ds~~~~ 52 (95)
T PF02711_consen 41 RLPSDSDSSTSQ 52 (95)
T ss_pred CCCCccccCCcc
Confidence 445667766553
No 19
>PF14173 ComGG: ComG operon protein 7
Probab=44.23 E-value=31 Score=26.78 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=23.7
Q ss_pred CCCCCCcEEEEeeCCceeeeeeehhhccceeEEeceec
Q 024412 162 PYVGYPKATFKFPLGEVSLVEREEEEVKKTLSISGIAK 199 (268)
Q Consensus 162 P~~glPRat~~FP~GevsleE~~~ee~~r~LSv~Gi~k 199 (268)
+.....-.+|.||.|+||.+-..+++..-.+++.=..+
T Consensus 35 ~~~~~~~~~~~y~~G~Vsy~~~~~~~~~~~v~l~~~t~ 72 (95)
T PF14173_consen 35 EDEKSQTGSFQYPDGTVSYQITKEDEDVITVTLQCETK 72 (95)
T ss_pred hhcCCCceEEEecCCEEEEEEEeccceEEEEEEEEEec
Confidence 44556678999999999995333332344455544443
No 20
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=44.20 E-value=24 Score=35.05 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=12.5
Q ss_pred cceeeeeehhcccceeeeec
Q 024412 102 KHLSLHYDLEEQNAFVKSSF 121 (268)
Q Consensus 102 K~~Sv~yD~e~rnAlv~~~~ 121 (268)
..-+.-.|++++.+++...-
T Consensus 119 ~~~gkk~~~~e~~~~~~sa~ 138 (377)
T KOG1945|consen 119 MGVGKKSGLEELGIFVKSAT 138 (377)
T ss_pred cccchhccchhhcceeeccc
Confidence 55555667777777665443
No 21
>PHA03417 E4 protein; Provisional
Probab=43.52 E-value=22 Score=30.13 Aligned_cols=10 Identities=0% Similarity=0.139 Sum_probs=6.4
Q ss_pred eeeeecCCCc
Q 024412 54 VTSEFDSDSS 63 (268)
Q Consensus 54 vtsEfDSe~s 63 (268)
.-|+.||...
T Consensus 61 l~sd~ds~~~ 70 (118)
T PHA03417 61 LGNDHEDLHN 70 (118)
T ss_pred ccCccccccc
Confidence 4678887533
No 22
>PF00778 DIX: DIX domain; InterPro: IPR001158 Dishevelled (Dsh) protein is an important component of the Wnt signal-transduction pathway. It has three relatively conserved domains: DIX, PDZ and DEP. The DIX domain of Dvl-1 (a mammalian Dishevelled homologue) shares 37% identity with the C-terminal region of Axin. Dsh can interact with the Axin/APC/GSK3/beta-catenin complex, and may thus modulate its activity []. The Wnt signalling pathway is conserved in various species from Caenorhabditis elegans to mammals, and plays important roles in development, cellular proliferation, and differentiation. The molecular mechanisms by which the Wnt signal regulates cellular functions are becoming increasingly well understood. Wnt stabilises cytoplasmic beta-catenin, which stimulates the expression of genes including c-myc, c-jun, fra-1, and cyclin D1. Axin and its homologue Axil are components of the Wnt signalling pathway that negatively regulate this pathway. Other components of the Wnt signalling pathway, including Dvl, glycogen synthase kinase-3beta (GSK-3beta), beta-catenin, and adenomatous polyposis coli (APC), interact with Axin, and the phosphorylation and stability of beta-catenin are regulated in the Axin complex. Axil has similar functions to Axin. Thus, Axin and Axil act as scaffold proteins in the Wnt signalling pathway, thereby modulating the Wnt-dependent cellular functions [].; GO: 0004871 signal transducer activity, 0007275 multicellular organismal development, 0005622 intracellular; PDB: 1WSP_B 2D5G_A 3PZ7_A 3PZ8_H.
Probab=41.13 E-value=27 Score=27.62 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=32.1
Q ss_pred cceeeeeeecCceeeeeeccCCCcccccc-cccccCCCCcc-eeeeeccccc
Q 024412 215 DLKLRYCYKDEALSFIPTISLPSNALSFA-LKRQFSPSDKL-RLELSLFPFF 264 (268)
Q Consensus 215 ~~~LrY~YKDeels~iPsiSlPSnalS~a-FKR~F~psdKL-SY~~~f~~~~ 264 (268)
..++-|-.-||+.-.+=.|..|.+.+.|+ ||+-| +|- .|+|-|-+.-
T Consensus 3 ~T~V~Y~~~~e~~Py~~~ip~~~~~iTL~dFK~~l---~r~G~yrffFK~~~ 51 (84)
T PF00778_consen 3 ETKVIYYIDDEETPYVVKIPKPPGEITLGDFKEVL---PRPGNYRFFFKSLD 51 (84)
T ss_dssp EEEEEEEETT-SS-EEEEESSSSTT-BHHHHHHTC---TS-SGEEEEEEEEE
T ss_pred ceEEEEEeCCCCCceEEEccCCCCccCHHHHHHhh---cCCCCceEEEEEeC
Confidence 34566777777777777788888888885 99999 344 8999887653
No 23
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=39.44 E-value=17 Score=42.54 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCCCceeeeeeecCCCceeeeccccccccccceeEEeeecCCCCC
Q 024412 19 PPPLDPQPQPSPSPPQPQQQRTSSLFSFPSRPALRVTSEFDSDSSIFLHKISCKLFDSLAKLKVSFQNDNKGQ 91 (268)
Q Consensus 19 ~pp~~p~p~p~p~pp~p~~~~~~~~~~~rrrp~lrvtsEfDSe~sIF~NkVSA~~l~GlAKLrLsfq~D~sG~ 91 (268)
+||.||+||++++|+.||+++.....+.+..++--+.-.|-.|-..... +-++..-+...+| +|+.|+
T Consensus 1688 ~~~~PP~~p~~~~~v~Pp~p~~~~~~~tPP~~~g~~~P~YRPEVgsY~a--n~~aA~~lfl~TL---HDR~Ge 1755 (2039)
T PRK15319 1688 GNVTPPDDGGDGGNVTPPDDGGDGGDVTPPDHGGDVAPQYRADIGAYMG--NQWMARNLQMQTL---YDREGS 1755 (2039)
T ss_pred cCCCCCccccccccCCCCCccccccCCCCCCcCCCCcccccCchhhhHH--HHHHHHhhhcccH---HHcCCc
No 24
>PHA03247 large tegument protein UL36; Provisional
Probab=39.02 E-value=52 Score=40.18 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=13.1
Q ss_pred CCeeeeeecceeeeeehhcccc
Q 024412 94 EPQLAFTSKHLSLHYDLEEQNA 115 (268)
Q Consensus 94 ~P~~~~vsK~~Sv~yD~e~rnA 115 (268)
.+-+..-+.-+.+|.|.+.++.
T Consensus 3001 ~~~~~~w~~~~~~~~~~~~~~~ 3022 (3151)
T PHA03247 3001 LSRVSSWASSLALHEETDPPPV 3022 (3151)
T ss_pred CCCcchhhhhccccccCCCCCC
Confidence 3445556666677777666443
No 25
>PHA03211 serine/threonine kinase US3; Provisional
Probab=38.35 E-value=28 Score=33.73 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=3.9
Q ss_pred eeEEEEecC
Q 024412 141 EVGVVANLG 149 (268)
Q Consensus 141 EV~~~A~l~ 149 (268)
|+.++++|.
T Consensus 210 E~~iL~~L~ 218 (461)
T PHA03211 210 EARLLRRLS 218 (461)
T ss_pred HHHHHHHCC
Confidence 444444443
No 26
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=36.02 E-value=55 Score=33.01 Aligned_cols=37 Identities=19% Similarity=0.024 Sum_probs=23.4
Q ss_pred eeeeecCCCceeeeccccccccccceeEEeeecCCCC
Q 024412 54 VTSEFDSDSSIFLHKISCKLFDSLAKLKVSFQNDNKG 90 (268)
Q Consensus 54 vtsEfDSe~sIF~NkVSA~~l~GlAKLrLsfq~D~sG 90 (268)
.|+|=|-|+.+-+|-+|-+...+--...-..|..++|
T Consensus 385 ~t~~dd~esr~~fhp~s~~p~Pep~~~~~~iy~~rs~ 421 (437)
T KOG4462|consen 385 RTSADDDESRFSFHPDSDLPIPEPFLFLPKIYPSRSG 421 (437)
T ss_pred ccccccccccccccchhccCCCcccccchhhcccccc
Confidence 3578888888889999988876533322223344444
No 27
>PHA03247 large tegument protein UL36; Provisional
Probab=33.16 E-value=76 Score=38.93 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=5.6
Q ss_pred ccccceeEEeeec
Q 024412 74 FDSLAKLKVSFQN 86 (268)
Q Consensus 74 l~GlAKLrLsfq~ 86 (268)
++.++.=++..++
T Consensus 2964 ~~~~~~~~~~~pR 2976 (3151)
T PHA03247 2964 LGALVPGRVAVPR 2976 (3151)
T ss_pred ccccCcccccCcc
Confidence 4444444444433
No 28
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=32.96 E-value=1.1e+02 Score=24.58 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=42.6
Q ss_pred eeeecCCCCCCCCC--cEEEEeeCCceeeeeeehhhccceeEEeceecccccCceEEeEeecccceeee
Q 024412 154 ALELSSPVPYVGYP--KATFKFPLGEVSLVEREEEEVKKTLSISGIAKGQILNGICTAQYEEEDLKLRY 220 (268)
Q Consensus 154 k~ELSS~vP~~glP--Rat~~FP~GevsleE~~~ee~~r~LSv~Gi~k~~~lnGv~tA~Y~d~~~~LrY 220 (268)
.++|...-|+...| .++.+=|.|+.. +|+.. ++++|++.-+-.-+=.-=.|+-.|+..+.+++-
T Consensus 16 sLtLtl~~~s~s~p~~~i~w~~P~n~~~-~~~~~--~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 16 NLTLTLHGSSNSLPAFKVEWRGPGNKSK-QILNQ--DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred cEEEEEecCCCCCCCccEEEeCCCCccc-eeccC--CccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 46666666666677 889999999944 43333 389999987665553333577777766665543
No 29
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=31.45 E-value=19 Score=29.21 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=20.0
Q ss_pred eecCCCCCCCCCcEEEEeeCCceeeeeeehhhccceeEEecee
Q 024412 156 ELSSPVPYVGYPKATFKFPLGEVSLVEREEEEVKKTLSISGIA 198 (268)
Q Consensus 156 ELSS~vP~~glPRat~~FP~GevsleE~~~ee~~r~LSv~Gi~ 198 (268)
+|+..+-..--+--+.+||+||+.++-.++-.++++.-|.-+.
T Consensus 15 ~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~ 57 (116)
T PF13793_consen 15 RIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTS 57 (116)
T ss_dssp HHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---S
T ss_pred HHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecC
Confidence 3444443323334577899999999865544445555444443
No 30
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=29.77 E-value=82 Score=17.59 Aligned_cols=22 Identities=36% Similarity=0.464 Sum_probs=15.7
Q ss_pred cCceEEeEeecccceeeeeeec
Q 024412 203 LNGICTAQYEEEDLKLRYCYKD 224 (268)
Q Consensus 203 lnGv~tA~Y~d~~~~LrY~YKD 224 (268)
++|.++--|.+..+.-.-.|||
T Consensus 1 ~~G~~~~yy~nG~l~~~~~y~n 22 (22)
T PF07661_consen 1 LDGEWKFYYENGKLKSEGHYKN 22 (22)
T ss_pred CcceEEEEeCCCCEEEEEEEEC
Confidence 4677777777777777777765
No 31
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=28.09 E-value=1.1e+02 Score=31.90 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=3.5
Q ss_pred eeeeeecCC
Q 024412 53 RVTSEFDSD 61 (268)
Q Consensus 53 rvtsEfDSe 61 (268)
...++.+.+
T Consensus 381 ~~~~~~~~~ 389 (833)
T KOG1922|consen 381 GLSSAPGPQ 389 (833)
T ss_pred ccccccCCC
Confidence 333333433
No 32
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=27.84 E-value=20 Score=35.69 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=0.0
Q ss_pred Ceeeeeecceeeeeeh
Q 024412 95 PQLAFTSKHLSLHYDL 110 (268)
Q Consensus 95 P~~~~vsK~~Sv~yD~ 110 (268)
-++||++.-|=-|=|-
T Consensus 69 aElGFTvsTLl~M~de 84 (386)
T PF01698_consen 69 AELGFTVSTLLNMTDE 84 (386)
T ss_dssp ----------------
T ss_pred HHhcccHHHHhcccHH
Confidence 4678877666666553
No 33
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=27.56 E-value=63 Score=33.26 Aligned_cols=14 Identities=14% Similarity=-0.121 Sum_probs=5.7
Q ss_pred CccccCCCCCceee
Q 024412 41 SSLFSFPSRPALRV 54 (268)
Q Consensus 41 ~~~~~~rrrp~lrv 54 (268)
++...+..|-..-+
T Consensus 544 ~~a~~r~~rhp~~~ 557 (563)
T KOG1785|consen 544 LSASERQPRHPYTN 557 (563)
T ss_pred CCccccCCCCCcCC
Confidence 44444444433333
No 34
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=24.45 E-value=1.3e+02 Score=28.99 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=40.1
Q ss_pred CcEEEEeeCCceeeee---eehhhccceeEEeceecccccCceEEeEeec------ccceeeeeeec
Q 024412 167 PKATFKFPLGEVSLVE---REEEEVKKTLSISGIAKGQILNGICTAQYEE------EDLKLRYCYKD 224 (268)
Q Consensus 167 PRat~~FP~GevsleE---~~~ee~~r~LSv~Gi~k~~~lnGv~tA~Y~d------~~~~LrY~YKD 224 (268)
|....+.|+|.+--+. ..-++|+ |-+.+|..+.=.+=-||-.|+. |+...++.||.
T Consensus 13 P~y~W~GP~g~~l~gn~~~nIT~TG~--L~~~~F~esmSG~YTCtLsYk~i~~~~~ee~~v~~~y~f 77 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGNSYVNITETGK--LMFKNFQESMSGSYTCTLSYKPIKAETQEEVEVSNTYKF 77 (271)
T ss_pred CceEEECCCCcccCCCCeEEEccCce--EEeeccccccCCceEEEEEEEeccccchhheeeeeEEEE
Confidence 5567888988765444 2335555 8899999987777789999998 66666666654
No 35
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=23.55 E-value=1.2e+02 Score=21.81 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=16.7
Q ss_pred ccceeeeeeecCceeeeeec
Q 024412 214 EDLKLRYCYKDEALSFIPTI 233 (268)
Q Consensus 214 ~~~~LrY~YKDeels~iPsi 233 (268)
.++..-..+||++..++|+-
T Consensus 14 g~l~fl~kwk~~~~~lVp~~ 33 (54)
T cd00034 14 GELTFLAKWKDGQASLVPNK 33 (54)
T ss_pred CeEEEEEEEeCCeEEEEEHH
Confidence 66777788999999999973
No 36
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=22.63 E-value=68 Score=24.97 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.9
Q ss_pred cceeEEeceecccccC
Q 024412 189 KKTLSISGIAKGQILN 204 (268)
Q Consensus 189 ~r~LSv~Gi~k~~~ln 204 (268)
+++|+|+|.++|.-|+
T Consensus 45 ~~~l~v~GyvRG~~l~ 60 (85)
T PF08142_consen 45 DGTLKVYGYVRGSPLS 60 (85)
T ss_pred ceEEEEEEEEcccccc
Confidence 4699999999998875
No 37
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=22.47 E-value=57 Score=25.41 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=15.1
Q ss_pred hccceeEEeceecccccC
Q 024412 187 EVKKTLSISGIAKGQILN 204 (268)
Q Consensus 187 e~~r~LSv~Gi~k~~~ln 204 (268)
+.++.|.|+|.|+|.-|+
T Consensus 41 ~~~~~l~v~GyvRG~~l~ 58 (83)
T smart00785 41 KVDRTLVVYGYVRGTGLN 58 (83)
T ss_pred ccCcEEEEEEEEcCCCCC
Confidence 346789999999998875
No 38
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=21.96 E-value=44 Score=33.75 Aligned_cols=10 Identities=70% Similarity=1.627 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 024412 24 PQPQPSPSPP 33 (268)
Q Consensus 24 p~p~p~p~pp 33 (268)
|+||||||||
T Consensus 16 ~~~~~~~~~~ 25 (461)
T PLN03132 16 PQPPPPPPPP 25 (461)
T ss_pred CCCcccCCCC
No 39
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=21.76 E-value=31 Score=24.64 Aligned_cols=16 Identities=44% Similarity=0.681 Sum_probs=13.3
Q ss_pred cccceeeeeeecCcee
Q 024412 213 EEDLKLRYCYKDEALS 228 (268)
Q Consensus 213 d~~~~LrY~YKDeels 228 (268)
..+..|+|+|.||||.
T Consensus 36 ~~~~~L~yR~~~~eL~ 51 (54)
T PF02928_consen 36 CSNHTLRYRYDDEELE 51 (54)
T ss_pred CCCeEEEEeCCHHHHH
Confidence 4558899999999984
No 40
>PRK09408 ompX outer membrane protein X; Provisional
Probab=21.60 E-value=67 Score=28.02 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=30.5
Q ss_pred ceeEEeceecccccCceEEeEeecccceeeeeee--cCceeeeeeccCCCcc
Q 024412 190 KTLSISGIAKGQILNGICTAQYEEEDLKLRYCYK--DEALSFIPTISLPSNA 239 (268)
Q Consensus 190 r~LSv~Gi~k~~~lnGv~tA~Y~d~~~~LrY~YK--Deels~iPsiSlPSna 239 (268)
.++|+ |-+.+++- |+ .=+=+-+||||+|. |+.+.+|=|+++=.+.
T Consensus 26 ~t~s~-GYaq~~~~-~~---~~~~~G~nlkYrye~~~~~~Gvi~sfty~~~~ 72 (171)
T PRK09408 26 STVTG-GYAQSDAQ-GV---ANKMGGFNLKYRYEQDNSPLGVIGSFTYTEKS 72 (171)
T ss_pred ceEEE-EEEEeecc-cc---CCCCCceEEEeeeecCCCcEEEEEEEEEecCc
Confidence 56665 66666662 22 00234579999999 4699999999986543
No 41
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=21.19 E-value=62 Score=27.28 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=27.6
Q ss_pred eeecCCCceeeeccc-------cccc-cccceeEEeeecCCCCCCCC
Q 024412 56 SEFDSDSSIFLHKIS-------CKLF-DSLAKLKVSFQNDNKGQIFE 94 (268)
Q Consensus 56 sEfDSe~sIF~NkVS-------A~~l-~GlAKLrLsfq~D~sG~~~~ 94 (268)
--||.+++.+..+.- .++. +..+++.+.||+|..|+-.+
T Consensus 85 v~F~~ds~~l~p~~~~~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~y 131 (190)
T COG2885 85 VLFDFDSSVLKPKAQATLDELAKYLKKNPITRILVEGHTDSTGSDEY 131 (190)
T ss_pred eEecCCccccCHhHHHHHHHHHHHHHhCCCcEEEEEecCCCCCCHHH
Confidence 468888888876322 2222 44788999999999997443
No 42
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=20.93 E-value=55 Score=21.81 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.9
Q ss_pred ccCCCCcceeeeeccccc
Q 024412 247 QFSPSDKLRLELSLFPFF 264 (268)
Q Consensus 247 ~F~psdKLSY~~~f~~~~ 264 (268)
...||||--|+++|...|
T Consensus 9 h~~psdksi~hwdf~~l~ 26 (28)
T PRK14751 9 HKNPSDKSIYHWDFYALL 26 (28)
T ss_pred ecCCCcCceeeeeehhhh
Confidence 346999999999998665
No 43
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=20.88 E-value=73 Score=31.69 Aligned_cols=51 Identities=25% Similarity=0.492 Sum_probs=32.9
Q ss_pred ccccceeEEEE-------ecCCCCceeeecCCCCCCCCCcEEEEee-CCceeeeeeehhhccceeEEeceec
Q 024412 136 KAQQGEVGVVA-------NLGDPGYALELSSPVPYVGYPKATFKFP-LGEVSLVEREEEEVKKTLSISGIAK 199 (268)
Q Consensus 136 KAqQGEV~~~A-------~l~dp~yk~ELSS~vP~~glPRat~~FP-~GevsleE~~~ee~~r~LSv~Gi~k 199 (268)
+...|||---+ .|.||+|+-+| +||+|| +|-.-+.++..| ..-.-+.|++-
T Consensus 23 g~~~GEvVFnTsMTGYqE~LTDPSY~gQI-----------v~fTyP~IGNyGvn~~d~E--s~~i~~~G~vv 81 (368)
T COG0505 23 GTAVGEVVFNTSMTGYQEILTDPSYKGQI-----------VTFTYPLIGNYGVNDEDFE--SDRIHAAGLVV 81 (368)
T ss_pred CcEEEEEEEeCCCCcccccccCCccCceE-----------EEEeccccccccCCchhcc--ccCceEEEEEE
Confidence 34567775544 46799999887 899999 487777744443 23344555543
No 44
>PF15152 Kisspeptin: Kisspeptin
Probab=20.18 E-value=38 Score=27.16 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=24.5
Q ss_pred CcEEEEeeCCceeeeeeehhhccceeEEeceecccccCceEEeEeecccceeeee
Q 024412 167 PKATFKFPLGEVSLVEREEEEVKKTLSISGIAKGQILNGICTAQYEEEDLKLRYC 221 (268)
Q Consensus 167 PRat~~FP~GevsleE~~~ee~~r~LSv~Gi~k~~~lnGv~tA~Y~d~~~~LrY~ 221 (268)
+..-+.=|.|+|-|| +|+| ..-||=|.+-|||.
T Consensus 46 ~sr~ipap~g~~lVq-Rekd---------------------ls~YNwNSFGLRYG 78 (78)
T PF15152_consen 46 RSRLIPAPRGAVLVQ-REKD---------------------LSAYNWNSFGLRYG 78 (78)
T ss_pred cceeccCCccchhhh-eecc---------------------cccccccccccccC
Confidence 345566789999888 6665 35689999999983
Done!