Query 024412
Match_columns 268
No_of_seqs 47 out of 49
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 07:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 94.0 0.0096 3.3E-07 52.8 0.0 6 54-59 435-440 (449)
2 4erh_A Outer membrane protein 70.5 1.6 5.6E-05 34.1 1.6 38 56-93 24-71 (148)
3 1zxu_A AT5G01750 protein; PFAM 60.1 41 0.0014 27.8 8.2 30 58-91 57-86 (217)
4 1nxk_A MAP kinase-activated pr 33.2 26 0.00089 30.7 2.9 11 75-85 73-83 (400)
5 3pz8_A Segment polarity protei 30.1 29 0.001 27.8 2.5 50 214-263 4-54 (106)
6 3nb3_A Outer membrane protein 26.8 13 0.00046 31.6 0.0 42 53-94 218-269 (346)
7 2jv4_A Peptidyl-prolyl CIS/tra 23.7 48 0.0016 23.0 2.4 28 235-262 3-30 (54)
8 1wsp_A Axin 1 protein; signali 21.8 54 0.0019 25.1 2.5 46 214-263 3-49 (84)
9 1pk8_A RAT synapsin I; ATP bin 20.8 21 0.00071 34.0 0.0 20 137-157 147-166 (422)
10 2kha_A Beta-1,3-glucan-binding 19.0 2.5E+02 0.0085 22.7 6.0 67 167-257 17-87 (130)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=94.01 E-value=0.0096 Score=52.78 Aligned_cols=6 Identities=17% Similarity=-0.075 Sum_probs=0.0
Q ss_pred eeeeec
Q 024412 54 VTSEFD 59 (268)
Q Consensus 54 vtsEfD 59 (268)
+|+...
T Consensus 435 ~~~~~~ 440 (449)
T 3iot_A 435 ITAGKL 440 (449)
T ss_dssp ------
T ss_pred cCCCcc
Confidence 444333
No 2
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=70.52 E-value=1.6 Score=34.06 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=25.8
Q ss_pred eeecCCCceeeec-------ccccccc---ccceeEEeeecCCCCCCC
Q 024412 56 SEFDSDSSIFLHK-------ISCKLFD---SLAKLKVSFQNDNKGQIF 93 (268)
Q Consensus 56 sEfDSe~sIF~Nk-------VSA~~l~---GlAKLrLsfq~D~sG~~~ 93 (268)
--||.+++.+... +...+.. ...+|.+.||+|..|...
T Consensus 24 v~F~~~s~~l~~~~~~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~ 71 (148)
T 4erh_A 24 VLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDA 71 (148)
T ss_dssp HHBCTTCCSBCHHHHHHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTC
T ss_pred eEecCCccccCHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHH
Confidence 4688888777632 2222322 357899999999999754
No 3
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=60.08 E-value=41 Score=27.78 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=15.7
Q ss_pred ecCCCceeeeccccccccccceeEEeeecCCCCC
Q 024412 58 FDSDSSIFLHKISCKLFDSLAKLKVSFQNDNKGQ 91 (268)
Q Consensus 58 fDSe~sIF~NkVSA~~l~GlAKLrLsfq~D~sG~ 91 (268)
||+++.+... |..+.+..-.++.+ .|.+|.
T Consensus 57 ~D~~G~~vf~-V~~~~~~~~~~~~l---~D~~G~ 86 (217)
T 1zxu_A 57 TDVNGNLLFK-VKEPVFGLHDKRVL---LDGSGT 86 (217)
T ss_dssp EETTSCEEEE-EECSSTTCCSEEEE---ECTTSC
T ss_pred EeCCCCEEEE-EEccccCCCCEEEE---ECCCCC
Confidence 6666665444 33344433444555 566664
No 4
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=33.18 E-value=26 Score=30.67 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=5.1
Q ss_pred cccceeEEeee
Q 024412 75 DSLAKLKVSFQ 85 (268)
Q Consensus 75 ~GlAKLrLsfq 85 (268)
.+..+|.++.+
T Consensus 73 G~~g~V~~~~~ 83 (400)
T 1nxk_A 73 GINGKVLQIFN 83 (400)
T ss_dssp ETTEEEEEEEE
T ss_pred ccCeEEEEEEE
Confidence 34444555444
No 5
>3pz8_A Segment polarity protein dishevelled homolog DVL-; DIX domain, oligomerization, signaling protein; 2.87A {Mus musculus}
Probab=30.08 E-value=29 Score=27.84 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=38.0
Q ss_pred ccceeeeeeecCceeeeeeccCCCccccc-ccccccCCCCcceeeeecccc
Q 024412 214 EDLKLRYCYKDEALSFIPTISLPSNALSF-ALKRQFSPSDKLRLELSLFPF 263 (268)
Q Consensus 214 ~~~~LrY~YKDeels~iPsiSlPSnalS~-aFKR~F~psdKLSY~~~f~~~ 263 (268)
++-++-|-.-||+.-..=.|..|...+.| .||+.|+-.-|-.|+|-|-+.
T Consensus 4 ~~TkV~Y~~ddE~tPY~~~Ip~~~~~iTL~dFK~~l~kr~~~nYryfFK~~ 54 (106)
T 3pz8_A 4 MDTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSM 54 (106)
T ss_dssp -CEEEEEECTTCSSCEEEEESSCSSSCBHHHHHHTCTTSCGGGBCCEEEEE
T ss_pred CceEEEEECCCCCCceEEEccCCcccccHHHHHHHHhcCCCccceEEEeec
Confidence 45678898999998888888888777886 599999654444688877654
No 6
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=26.82 E-value=13 Score=31.63 Aligned_cols=42 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred eeeeeecCCCceeee-------cccccccc---ccceeEEeeecCCCCCCCC
Q 024412 53 RVTSEFDSDSSIFLH-------KISCKLFD---SLAKLKVSFQNDNKGQIFE 94 (268)
Q Consensus 53 rvtsEfDSe~sIF~N-------kVSA~~l~---GlAKLrLsfq~D~sG~~~~ 94 (268)
..+--||..++.+.. ++...+.. ...+|++.||+|..|+..+
T Consensus 218 ~~~~~F~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~i~i~Ghtd~~g~~~~ 269 (346)
T 3nb3_A 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAY 269 (346)
T ss_dssp ----------------------------------------------------
T ss_pred ccceEecCCccccCHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCCCCHHH
Confidence 334457776666543 23233322 2468999999999886543
No 7
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=23.67 E-value=48 Score=22.97 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=21.8
Q ss_pred CCCcccccccccccCCCCcceeeeeccc
Q 024412 235 LPSNALSFALKRQFSPSDKLRLELSLFP 262 (268)
Q Consensus 235 lPSnalS~aFKR~F~psdKLSY~~~f~~ 262 (268)
++...|--+.+.|++++++-.|.||-.|
T Consensus 3 m~~~~LP~GW~~~~~~~~Gr~YY~N~~T 30 (54)
T 2jv4_A 3 MVNTGLPAGWEVRHSNSKNLPYYFNPAT 30 (54)
T ss_dssp CCCCCCCSSCCEEECSSSSCEEEEETTT
T ss_pred CCCCCCCCCcEEEEECCCCCEEEEECCC
Confidence 3344455578999999999999999776
No 8
>1wsp_A Axin 1 protein; signaling protein; 2.90A {Rattus norvegicus} SCOP: d.15.1.8 PDB: 2d5g_A
Probab=21.76 E-value=54 Score=25.05 Aligned_cols=46 Identities=11% Similarity=0.269 Sum_probs=31.0
Q ss_pred ccceeeeeeecCceeeeeeccCCCcccccc-cccccCCCCcceeeeecccc
Q 024412 214 EDLKLRYCYKDEALSFIPTISLPSNALSFA-LKRQFSPSDKLRLELSLFPF 263 (268)
Q Consensus 214 ~~~~LrY~YKDeels~iPsiSlPSnalS~a-FKR~F~psdKLSY~~~f~~~ 263 (268)
++.++-|..-||+.-.+=. +|...+.|+ ||+.|+ -|=.|+|-|-+.
T Consensus 3 ~~T~V~Y~~~~e~~Py~~~--ip~~~iTL~dFK~~l~--k~g~yrffFK~~ 49 (84)
T 1wsp_A 3 DSIVVAYYFCGEPIPYRTL--VRGRAVTLGQFKELLT--KKGSYRYYFKKV 49 (84)
T ss_dssp CCEEEEEEETTCSSCEEEE--ETTSCCBHHHHHHHCC--SCSCEEEEEEEE
T ss_pred CceEEEEEeCCCCcceEEe--cCCCcccHHHHHHhcC--CCCceEEEEeec
Confidence 3566777776766655433 566778875 999993 334788888654
No 9
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=20.84 E-value=21 Score=34.01 Aligned_cols=20 Identities=20% Similarity=0.614 Sum_probs=8.7
Q ss_pred cccceeEEEEecCCCCceeee
Q 024412 137 AQQGEVGVVANLGDPGYALEL 157 (268)
Q Consensus 137 AqQGEV~~~A~l~dp~yk~EL 157 (268)
|+-.|++++.. .|..|.+.+
T Consensus 147 a~~~~i~l~~~-~~~~~~v~~ 166 (422)
T 1pk8_A 147 AEFSDLNLVAH-ANGGFSVDM 166 (422)
T ss_dssp ECGGGEEEEEE-TTSCEEEEE
T ss_pred HhhcCceEEEE-cCCceeEEe
Confidence 33445555542 344444433
No 10
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=19.03 E-value=2.5e+02 Score=22.69 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=0.0
Q ss_pred CcEEEEeeCC-ceeeeeeehhhccceeEEeceecccccC---ceEEeEeecccceeeeeeecCceeeeeeccCCCccccc
Q 024412 167 PKATFKFPLG-EVSLVEREEEEVKKTLSISGIAKGQILN---GICTAQYEEEDLKLRYCYKDEALSFIPTISLPSNALSF 242 (268)
Q Consensus 167 PRat~~FP~G-evsleE~~~ee~~r~LSv~Gi~k~~~ln---Gv~tA~Y~d~~~~LrY~YKDeels~iPsiSlPSnalS~ 242 (268)
++++..-|.| +||+. |++-+..++.|-+...+-+ |...+...+-. +=|+.|.|.++.+
T Consensus 17 ~~ve~l~PkGf~VSIp----epGi~lFaFh~~iN~~~~~~~~G~~~~dit~~~-~GrW~~~d~~~~L------------- 78 (130)
T 2kha_A 17 AKLEAIYPRGLRVSIP----DDGFSLFAFHGKLNEEMDGLEAGHWARDITKPK-EGRWTFRDRNAKL------------- 78 (130)
T ss_dssp CEEEEETTTEEEEEEE----CCSCSEEEEEEEESCCCSSCCCCSEEEEECSCS-SSEEEEEETTCCC-------------
T ss_pred cEEEEeCCCCEEEEEe----CCCcEEEEEEEEccCCCcccccceeeeeeeeec-CCEEEEECCceee-------------
Q ss_pred ccccccCCCCcceee
Q 024412 243 ALKRQFSPSDKLRLE 257 (268)
Q Consensus 243 aFKR~F~psdKLSY~ 257 (268)
-+-|+|.||
T Consensus 79 ------k~GD~IyYw 87 (130)
T 2kha_A 79 ------KLGDKIYFW 87 (130)
T ss_dssp ------CTTCEEEEE
T ss_pred ------CCCCEEEEE
Done!