Query 024412
Match_columns 268
No_of_seqs 47 out of 49
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 07:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024412.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024412hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wspa1 d.15.1.8 (A:750-832) A 43.3 6.4 0.00047 28.4 2.4 46 214-263 2-48 (83)
2 d1wfma_ b.7.1.2 (A:) Synaptota 30.8 20 0.0015 25.3 3.5 17 46-62 9-25 (138)
3 d1vjka_ d.15.3.1 (A:) Molybdop 26.8 12 0.00089 25.0 1.5 12 223-234 77-88 (88)
4 d2c4ka1 c.61.1.2 (A:7-166) PRP 20.8 22 0.0016 27.3 2.1 28 169-196 32-59 (160)
5 d1vcaa2 b.1.1.4 (A:1-90) Vascu 20.3 93 0.0067 19.6 5.1 58 155-212 19-76 (90)
6 d2fmma1 b.34.13.2 (A:108-175) 19.9 37 0.0027 23.1 2.9 38 195-232 4-42 (68)
7 d1dkua1 c.61.1.2 (A:8-166) Pho 19.8 18 0.0013 27.8 1.5 28 169-196 29-56 (159)
8 d1vr8a1 d.312.1.1 (A:25-154) H 18.0 43 0.0032 25.9 3.3 32 194-226 27-58 (130)
9 d1jyoa_ d.198.1.1 (A:) Virulen 17.9 59 0.0043 22.8 3.9 27 203-230 23-49 (130)
10 d2aqaa1 g.41.16.1 (A:2-58) H/a 16.3 20 0.0015 24.5 0.8 13 243-255 29-41 (57)
No 1
>d1wspa1 d.15.1.8 (A:750-832) Axin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=43.31 E-value=6.4 Score=28.35 Aligned_cols=46 Identities=11% Similarity=0.250 Sum_probs=35.4
Q ss_pred ccceeeeeeecCceeeeeeccCCCcccccc-cccccCCCCcceeeeecccc
Q 024412 214 EDLKLRYCYKDEALSFIPTISLPSNALSFA-LKRQFSPSDKLRLELSLFPF 263 (268)
Q Consensus 214 ~~~~LrY~YKDeels~iPsiSlPSnalS~a-FKR~F~psdKLSY~~~f~~~ 263 (268)
|++.+-|.+-||+.-+. +++|...+.|+ ||+.|.= |=.|+|-|-+.
T Consensus 2 ~~~~v~Y~~~~e~~Py~--~~ip~~~iTL~dFK~~~~~--~G~y~f~FK~~ 48 (83)
T d1wspa1 2 DSIVVAYYFCGEPIPYR--TLVRGRAVTLGQFKELLTK--KGSYRYYFKKV 48 (83)
T ss_dssp CCEEEEEEETTCSSCEE--EEETTSCCBHHHHHHHCCS--CSCEEEEEEEE
T ss_pred CceEEEEEeCCCCCceE--EeccCCcccHHHHHHhcCC--CCcEEEEEEec
Confidence 46777888888888874 78899999885 9999942 34788888654
No 2
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.82 E-value=20 Score=25.35 Aligned_cols=17 Identities=18% Similarity=0.471 Sum_probs=8.1
Q ss_pred CCCCCceeeeeeecCCC
Q 024412 46 FPSRPALRVTSEFDSDS 62 (268)
Q Consensus 46 ~rrrp~lrvtsEfDSe~ 62 (268)
+-.-|.|+++-+||.+.
T Consensus 9 ~~~~~~l~~sl~y~~~~ 25 (138)
T d1wfma_ 9 WNQAPKLHYCLDYDCQK 25 (138)
T ss_dssp CSSCCEEEEEEEEETTT
T ss_pred CCcCCEEEEEEEECCCC
Confidence 33444455555555443
No 3
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}
Probab=26.84 E-value=12 Score=24.96 Aligned_cols=12 Identities=17% Similarity=0.548 Sum_probs=9.3
Q ss_pred ecCceeeeeecc
Q 024412 223 KDEALSFIPTIS 234 (268)
Q Consensus 223 KDeels~iPsiS 234 (268)
.+||+.|+|-||
T Consensus 77 ~gDevai~PPVs 88 (88)
T d1vjka_ 77 DGDVVGVFPPVS 88 (88)
T ss_dssp TTCEEEEESCC-
T ss_pred CCCEEEEeCCCC
Confidence 457999999886
No 4
>d2c4ka1 c.61.1.2 (A:7-166) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.77 E-value=22 Score=27.34 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=18.4
Q ss_pred EEEEeeCCceeeeeeehhhccceeEEec
Q 024412 169 ATFKFPLGEVSLVEREEEEVKKTLSISG 196 (268)
Q Consensus 169 at~~FP~GevsleE~~~ee~~r~LSv~G 196 (268)
-.-+||+||+.++-.++-.++.+.-|..
T Consensus 32 ~~~~F~DGE~~v~i~e~vrg~~V~ivqs 59 (160)
T d2c4ka1 32 VVYQETNGETRVEIKESVRGQDIFIIQT 59 (160)
T ss_dssp EEEECTTSCEEEEECSCCTTCCEEEECC
T ss_pred EEEECCCCCeeeccCccccCCceEEEec
Confidence 3458999999998555434455554443
No 5
>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.31 E-value=93 Score=19.62 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=38.2
Q ss_pred eeecCCCCCCCCCcEEEEeeCCceeeeeeehhhccceeEEeceecccccCceEEeEee
Q 024412 155 LELSSPVPYVGYPKATFKFPLGEVSLVEREEEEVKKTLSISGIAKGQILNGICTAQYE 212 (268)
Q Consensus 155 ~ELSS~vP~~glPRat~~FP~GevsleE~~~ee~~r~LSv~Gi~k~~~lnGv~tA~Y~ 212 (268)
+.|.+.+-..-.|.++.....+.+.-..........+|.|..+-..+-.+=.|+|.-.
T Consensus 19 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~ 76 (90)
T d1vcaa2 19 VSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCE 76 (90)
T ss_dssp EEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred EEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeC
Confidence 5555555444456666666766665444444445678999998888877777888643
No 6
>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Probab=19.95 E-value=37 Score=23.09 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=31.9
Q ss_pred eceecccccCceEEeEeecccceeeeeeec-Cceeeeee
Q 024412 195 SGIAKGQILNGICTAQYEEEDLKLRYCYKD-EALSFIPT 232 (268)
Q Consensus 195 ~Gi~k~~~lnGv~tA~Y~d~~~~LrY~YKD-eels~iPs 232 (268)
+|+-+|--+.-|+-|--.++++.+==++|| +++-+||+
T Consensus 4 ~Gf~RGl~~ekIig~t~~~gel~flvkwk~~d~~dlVp~ 42 (68)
T d2fmma1 4 RGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPA 42 (68)
T ss_dssp CGGGGCCCEEEEEEEEEETTEEEEEEEETTCSCCEEEEH
T ss_pred cccccCCCccEEEEeEccCCeEEEEEEECCCChhhheeH
Confidence 677788888888888778888888889999 89999986
No 7
>d1dkua1 c.61.1.2 (A:8-166) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=19.77 E-value=18 Score=27.78 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=18.7
Q ss_pred EEEEeeCCceeeeeeehhhccceeEEec
Q 024412 169 ATFKFPLGEVSLVEREEEEVKKTLSISG 196 (268)
Q Consensus 169 at~~FP~GevsleE~~~ee~~r~LSv~G 196 (268)
-.=+||+||+.++-.+.-.++.+.-|..
T Consensus 29 ~~~~FpDGE~~v~i~~~vrg~dv~ivqs 56 (159)
T d1dkua1 29 SVTRFSDGEVQINIEESIRGCDCYIIQS 56 (159)
T ss_dssp EEEECTTSCEEEEECSCCTTCEEEEECC
T ss_pred EEEEcCCCCEEEEeecCCCCCceEEEec
Confidence 3447999999998655544555555543
No 8
>d1vr8a1 d.312.1.1 (A:25-154) Hypothetical protein TM1622 {Thermotoga maritima [TaxId: 2336]}
Probab=18.00 E-value=43 Score=25.92 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=24.4
Q ss_pred EeceecccccCceEEeEeecccceeeeeeecCc
Q 024412 194 ISGIAKGQILNGICTAQYEEEDLKLRYCYKDEA 226 (268)
Q Consensus 194 v~Gi~k~~~lnGv~tA~Y~d~~~~LrY~YKDee 226 (268)
|+| .+.--|+|+|-.-=+++-+=+-|.|+||+
T Consensus 27 id~-yg~v~~kG~~avF~~~~G~f~vfkY~dE~ 58 (130)
T d1vr8a1 27 IDS-YGDVEMKGKVAVFETEYGPVFLYVYKGEE 58 (130)
T ss_dssp EEE-ETTEEEEEEEEEEEETTEEEEEEEEESTT
T ss_pred ecc-cCceEeeeEEEEEEcCCCcEEEEEEcCcc
Confidence 455 34444599987777788888999999998
No 9
>d1jyoa_ d.198.1.1 (A:) Virulence effector SptP secretion chaperone SicP {Salmonella typhimurium [TaxId: 90371]}
Probab=17.94 E-value=59 Score=22.78 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=21.8
Q ss_pred cCceEEeEeecccceeeeeeecCceeee
Q 024412 203 LNGICTAQYEEEDLKLRYCYKDEALSFI 230 (268)
Q Consensus 203 lnGv~tA~Y~d~~~~LrY~YKDeels~i 230 (268)
-||+|+-.+ |+++.+...+.++++.+.
T Consensus 23 e~g~c~L~~-D~~~~v~l~~~~~~l~l~ 49 (130)
T d1jyoa_ 23 DNNQCLLLL-DSDIFTSIEAKDDIWLLN 49 (130)
T ss_dssp TTSEEEEEE-TTTEEEEEEEETTEEEEE
T ss_pred CCCEEEEEE-CCeEEEEEEEcCCEEEEE
Confidence 479999999 557888888989887764
No 10
>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.26 E-value=20 Score=24.48 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=10.6
Q ss_pred ccccccCCCCcce
Q 024412 243 ALKRQFSPSDKLR 255 (268)
Q Consensus 243 aFKR~F~psdKLS 255 (268)
|-=-||+|.||.|
T Consensus 29 ahPaRFSPdDkys 41 (57)
T d2aqaa1 29 AHPARFSPDDKYS 41 (57)
T ss_dssp SCCCCCCSSSTTS
T ss_pred cCCCcCCcccccH
Confidence 4556999999987
Done!