BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024413
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 6/192 (3%)
Query: 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV 129
+I++ VG AGSGKTT + + YV NLD V LP+ +ID+R+ + +E+
Sbjct: 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVEEI 73
Query: 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189
M++ GPNG I+ S + KF+E ++ I R DYVL+DTPGQ+E F + G +
Sbjct: 74 MRE-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 132
Query: 190 TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD-VAQHEF 248
E +P VV Y+ D P + +A I + + A NK D +++ E
Sbjct: 133 MENLP--YPLVV-YISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEK 189
Query: 249 ALEVQFFSMLDY 260
++F +DY
Sbjct: 190 ERHRKYFEDIDY 201
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN 97
I K KP I+++VG+ GSGKTT + +L + Q R
Sbjct: 94 IEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRG 128
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106
+K +I++VG+ GSGKTT +L + Q R ++ ++ D
Sbjct: 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY- 126
K +++ + G+ GSGKTT RL Q R V++ D A T+ A + +R+
Sbjct: 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHL 71
Query: 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIER 161
K + L G++ + F + + + +++ R
Sbjct: 72 KRIAWIARLLARNGVIVICS-FVSPYKQARNMVRR 105
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106
+K +I++VG+ GSGKTT +L + Q R ++ ++ D
Sbjct: 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 67 RKPVIIIVVGMAGSGKTTFMHRL 89
RKP +I++VG+ G GKTT + +L
Sbjct: 155 RKPAVIMIVGVNGGGKTTSLGKL 177
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 67 RKPVIIIVVGMAGSGKTTFMHRL 89
RKP +I++VG+ G GKTT + +L
Sbjct: 98 RKPAVIMIVGVNGGGKTTSLGKL 120
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA 115
+N + P II++VG+ GSGKTT +L + RGY + L A + P A
Sbjct: 91 VNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKK---RGYKVGLVAADVYRPAA 140
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA 115
+N + P II++VG+ GSGKTT +L + RGY + L A + P A
Sbjct: 98 VNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKK---RGYKVGLVAADVYRPAA 147
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 33/153 (21%)
Query: 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV 129
+I IV G G+GKTT L R + ++ D + L +D D + +
Sbjct: 4 IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVL 63
Query: 130 MKQFNLGPNGGILTSLNLFTTKFDEVISL--------------------IERRADHLDYV 169
+ N+ ++ T+FD V L I+ D D++
Sbjct: 64 AGEANV--------EDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFI 115
Query: 170 LVDTPGQIEIFTWSA--SGAIITEAFASTFPTV 200
L+D P +++ SA SG EA T P +
Sbjct: 116 LIDCPAGLQLDAMSAMLSG---EEALLVTNPEI 145
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102
+ +VG AGSGKTT L+ T ++ RG V
Sbjct: 12 VALVGHAGSGKTTLTEALLYKTGAKERRGRV 42
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + + YV L V L F N
Sbjct: 18 LVLVGDGGTGKTTFVKR---HLTGESEKKYVATLGVEVHPLVFHTN 60
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102
K+ + +I++G +G GKT+ MHR V S+ + +
Sbjct: 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI 41
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIR 99
+P ++++VG+ G GKTT + +L + ++
Sbjct: 115 RPAVLMIVGVNGGGKTTTLGKLANRFKKEGVK 146
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLP-FAANIDIRDTIRYKEVM 130
I+++G+ G+GKTT ++RL + V T+P N+ +T+ YK +
Sbjct: 5 ILILGLDGAGKTTILYRL--------------QVGEVVTTIPTIGFNV---ETVTYKNLK 47
Query: 131 KQ-FNLGPNGGILTSLNLFTTKFDEVISLIE 160
Q ++LG I + + D VI +++
Sbjct: 48 FQVWDLGGQTSIRPYWRCYYSNTDAVIYVVD 78
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 68 KPVIIIVVGMAGSGKTTFMHRL 89
K + I+++G+ G+GKTT ++RL
Sbjct: 17 KELRILILGLDGAGKTTILYRL 38
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 13 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 55
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 65 FKRKPVIIIVVGMAGSGKTTFMHRL 89
F K + I++VG+ G+GKTT +++L
Sbjct: 13 FGNKEMRILMVGLDGAGKTTVLYKL 37
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 13 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 55
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN-----IDIRDT 123
+++VG G+GKTTF+ R H + Y+ + V L F N D+ DT
Sbjct: 7 LVLVGDGGTGKTTFVKR---HLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 13 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 55
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 13 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 55
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 13 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 55
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN-----IDIRDT 123
+++VG G+GKTTF+ R H + Y+ + V L F N D+ DT
Sbjct: 8 LVLVGDGGTGKTTFVKR---HLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 61
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 13 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 55
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 65 FKRKPVIIIVVGMAGSGKTTFMHRL 89
F K + I++VG+ G+GKTT +++L
Sbjct: 13 FGNKEMRILMVGLDGAGKTTVLYKL 37
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 65 FKRKPVIIIVVGMAGSGKTTFMHRL 89
F K + I++VG+ G+GKTT +++L
Sbjct: 13 FGNKEMRILMVGLDGAGKTTVLYKL 37
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 6 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 48
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 13 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 55
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 9 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 51
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 65 FKRKPVIIIVVGMAGSGKTTFMHRL 89
F++K V I++VG+ +GKTT ++++
Sbjct: 13 FQKKDVRILMVGLDAAGKTTILYKV 37
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 18 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 60
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN-----IDIRDT 123
+++VG G+GKTTF+ R H + Y+ + V L F N D+ DT
Sbjct: 15 LVLVGDGGTGKTTFVKR---HLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 68
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 15 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 57
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIR 99
K K +I+ VG+ GSGKTT +L + Q + +
Sbjct: 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWK 131
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 13 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVPTLGVEVHPLVFHTN 55
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 68 KPVIIIVVGMAGSGKTTFMHRL 89
KP +I+ VG GSGKTT + +L
Sbjct: 128 KPYVIMFVGFNGSGKTTTIAKL 149
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
+++VG G+GKTTF+ R H + YV L V L F N
Sbjct: 13 LVLVGDGGTGKTTFVKR---HLTGEFEKKYVPTLGVEVHPLVFHTN 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,140,658
Number of Sequences: 62578
Number of extensions: 260913
Number of successful extensions: 907
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 52
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)